HHsearch alignment for GI: 254781115 and conserved domain: COG2844

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones].
Probab=98.36  E-value=2.4e-06  Score=62.02  Aligned_cols=190  Identities=14%  Similarity=0.056  Sum_probs=123.7

Q ss_pred             HHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCC-CC-HHHHHHHHHHHHC-CCCHHHHHHHHHHCCCCCCCCC
Q ss_conf             0104210033201220136433111100012333321022-20-5776887886421-1018999998753002334688
Q gi|254781115|r  160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI-LS-SERIWSEINKLLE-AKNPLNAIVHMYNGGIFKEIFL  236 (416)
Q Consensus       160 f~EDpLRiLRa~RFasrlg~f~id~~t~~ai~~~~~~L~~-iS-~ERI~~El~KiL~-~~~~~~~l~~L~~~gll~~ifp  236 (416)
T Consensus       349 f~~dP~~ilrlf~~~~~~~~~~~~~~Tlr~L~~a~~~l~~~l~~~peA~~~Fl~il~~~~~~~r~l~~Mn~~GVLgrylP  428 (867)
T COG2844         349 FERDPEAILRLFAIMAQTGLITGHPDTLRQLRRALRLLNQPLREDPEARRLFLSILRSPNAIRRTLRPMNRYGVLGRYLP  428 (867)
T ss_pred             HHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             22086999999999864388555748999999750125861113988999999998389857899997777434887553


Q ss_pred             CCCCCC------------HHH-HHHHHH-HHH------H----------CCCCCCHHHHHHHHCCCCCH-----------
Q ss_conf             701058------------578-987786-776------3----------17880167666520477685-----------
Q gi|254781115|r  237 DVQEIS------------LDQ-LSQVIE-AEQ------V----------FEWKIDSLLRFIVLISWQDK-----------  275 (416)
Q Consensus       237 el~~~~------------~~~-l~~~~~-~~~------~----------~~~~~~~~lrla~Ll~~~~~-----------  275 (416)
T Consensus       429 ew~~Ivg~MQfdlfH~YTVDeH~lr~v~~l~~~a~~~~~~~hPl~~~l~~~~~~~elLylAaLfHDIaKGRggDHs~lGA  508 (867)
T COG2844         429 EWGKIVGLMQFDLFHIYTVDEHTLRVVLKLARFARGEARHEHPLASQLMPRLEKRELLYLAALFHDIAKGRGGDHSILGA  508 (867)
T ss_pred             CHHHHHCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             37765402466743012242999999998887501212334752676503788731999999988862378986677619


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             78998875303425677778888754114333-------67246678998708024551698999864077760138999
Q gi|254781115|r  276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKT-------LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI  348 (416)
Q Consensus       276 ~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  348 (416)
T Consensus       509 ~~a~~fc~~hGL~~~e~~lvaWLVe~HLlMS~tAQrrDl~Dp~vI~~Fa~~Vq~~~rL~~L~~LTVaDI~AtgP~vWN~W  588 (867)
T COG2844         509 EDARRFCERHGLNSRETELVAWLVENHLLMSVTAQRRDLNDPKVIDAFAEAVQDEERLRYLLVLTVADIRATGPGVWNSW  588 (867)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             99999999829987776899999998777678887617898699999999856889988999988776506686503788


Q ss_pred             H
Q ss_conf             9
Q gi|254781115|r  349 L  349 (416)
Q Consensus       349 ~  349 (416)
T Consensus       589 K  589 (867)
T COG2844         589 K  589 (867)
T ss_pred             H
T ss_conf             9