HHsearch alignment for GI: 254781115 and conserved domain: PRK00227
>PRK00227 glnD PII uridylyl-transferase; Provisional.
Probab=98.95 E-value=2.1e-09 Score=82.47 Aligned_cols=176 Identities=15% Similarity=0.068 Sum_probs=123.0
Q ss_pred HHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 010421003320122013643311110001233332102220577688788642110-1899999875300233468870
Q gi|254781115|r 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK-NPLNAIVHMYNGGIFKEIFLDV 238 (416)
Q Consensus 160 f~EDpLRiLRa~RFasrlg~f~id~~t~~ai~~~~~~L~~iS~ERI~~El~KiL~~~-~~~~~l~~L~~~gll~~ifpel 238 (416)
T Consensus 289 ~~~dP~llLrlf~~aa~~~-l~i~~~t~r~l~~~~~l~~~~-~~~a~~~Fl~IL~sp~~~~~~Lr~M~~~GVLgryIPEF 366 (692)
T PRK00227 289 DLTDPALPLRVAAAAAKTG-LPVSESTWKRLNECPPLPEPW-PAAAAGDFFRILSSPVNSRRVVKQMDRHGLWSRYVPEW 366 (692)
T ss_pred CCCCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHCCCCCCCC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHCCHH
T ss_conf 5448078999999876539-976989999998381036777-79999999999849986689999987735679867007
Q ss_pred CCCCH------------HH-HHHHHH--HHHHCCCCCCHHHHHHHHCCCCCH-----------HHHHHHHHHCCCHHHHH
Q ss_conf 10585------------78-987786--776317880167666520477685-----------78998875303425677
Q gi|254781115|r 239 QEISL------------DQ-LSQVIE--AEQVFEWKIDSLLRFIVLISWQDK-----------KSILSMAKKFSLPREIR 292 (416)
Q Consensus 239 ~~~~~------------~~-l~~~~~--~~~~~~~~~~~~lrla~Ll~~~~~-----------~~~~~~~~rlkl~~~~~ 292 (416)
T Consensus 367 g~IvgqMQfDlfH~YTVDeHtL~~v~~~a~~~~~v~rpeLLylAaLlHDIGKGrggDHS~~GA~~A~~~c~RlGl~~~dt 446 (692)
T PRK00227 367 DRIRGLMPREPSHISTIDEHSLNTVAGCALETVTVARPDLLVLGALYHDIGKGTDRPHEQVGAEMVARAASRMGLNLRDR 446 (692)
T ss_pred HHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 86517757665501640178999999998753367882799999998940478999867887999999999859999999
Q ss_pred HHHHHHHHHHCCCCC-------CCHHHHHHHHHHCC-CHHHHHHHHHHHHHHC
Q ss_conf 778888754114333-------67246678998708-0245516989998640
Q gi|254781115|r 293 YFLISFFNCNFNQKT-------LSIPEIKKLFYLYG-DKVMIAKLKIFLALHY 337 (416)
Q Consensus 293 ~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 337 (416)
T Consensus 447 elV~wLVr~HLlMS~tAqRRDisDP~tI~~fa~~V~~~~~rL~lL~~LTvADi 499 (692)
T PRK00227 447 ASVQTLVAEHTTIAKIAARLDPSSEEAVDKLLDAVRYDLVTLNLLEVLTEADA 499 (692)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999886210877325899889999999986798899999999999874