HHsearch alignment for GI: 254781115 and conserved domain: PRK00275
>PRK00275 glnD PII uridylyl-transferase; Provisional.
Probab=99.08 E-value=8.7e-10 Score=85.05 Aligned_cols=191 Identities=14% Similarity=0.092 Sum_probs=131.0
Q ss_pred CHHHCCCCCEEEEEEEEECCCCC-CCCCCCHHHHHHHHHHCCCC-C-HHHHHHHHHHHHCCCC-HHHHHHHHHHCCCCCC
Q ss_conf 10010421003320122013643-31111000123333210222-0-5776887886421101-8999998753002334
Q gi|254781115|r 158 HRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKIL-S-SERIWSEINKLLEAKN-PLNAIVHMYNGGIFKE 233 (416)
Q Consensus 158 ~rf~EDpLRiLRa~RFasrlg~f-~id~~t~~ai~~~~~~L~~i-S-~ERI~~El~KiL~~~~-~~~~l~~L~~~gll~~ 233 (416)
T Consensus 360 ~~f~~~P~~ll~lF~~~a~~~~i~gi~~~t~r~ir~~~~~id~~~r~~~~~~~~Fl~iL~~~~~~~~~Lr~M~~~GvLg~ 439 (894)
T PRK00275 360 NVFKRTPFALLEIFVLMAQHPEIKGVRADTIRLLREHRHLIDDAFRNDIRNTSLFIELFKCPHGIHRNLRRMNRYGILGR 439 (894)
T ss_pred HHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHH
T ss_conf 44430948899999999858675676846899999877527955300988789999997088877999999987597331
Q ss_pred CCCCCCCCCH------------H--------HHHHHHH---------HHHHC-CCCCCHHHHHHHHCCCCCH--------
Q ss_conf 6887010585------------7--------8987786---------77631-7880167666520477685--------
Q gi|254781115|r 234 IFLDVQEISL------------D--------QLSQVIE---------AEQVF-EWKIDSLLRFIVLISWQDK-------- 275 (416)
Q Consensus 234 ifpel~~~~~------------~--------~l~~~~~---------~~~~~-~~~~~~~lrla~Ll~~~~~-------- 275 (416)
T Consensus 440 ~iPef~~I~g~mQfD~yH~YTVDeHtl~~v~~L~~~~~~~~~~~~p~~~~l~~~l~~~~lLylA~L~HDIGKGrggDHS~ 519 (894)
T PRK00275 440 YLPEFGHIVGQMQHDLFHIYTVDAHTLNLIKHLRKLRYPEVSEKFPLASKLMGRLPKPELLYIAGLYHDIGKGRGGDHSE 519 (894)
T ss_pred CCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 09967765255244410026121779999999999857010102467799885267677999999864640488898056
Q ss_pred ---HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf ---78998875303425677778888754114333-------67246678998708024551698999864077760138
Q gi|254781115|r 276 ---KSILSMAKKFSLPREIRYFLISFFNCNFNQKT-------LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345 (416)
Q Consensus 276 ---~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 345 (416)
T Consensus 520 ~GA~~A~~~~~r~gl~~~d~elv~wLV~~HLlMS~tAqRrDi~DP~vI~~FA~~Vgs~erL~~LylLTvADi~Atgp~~W 599 (894)
T PRK00275 520 LGAVDAEAFCQRHQLPAWDTRLVVWLVENHLVMSTTAQRKDLSDPQVIHDFALAVGDETHLDYLYVLTVADINATNPTLW 599 (894)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 67999999999869987898999999998998888986148998799999999809788999987666754416782223
Q ss_pred HHH
Q ss_conf 999
Q gi|254781115|r 346 CFI 348 (416)
Q Consensus 346 ~~~ 348 (416)
T Consensus 600 N~W 602 (894)
T PRK00275 600 NSW 602 (894)
T ss_pred HHH
T ss_conf 478