HHsearch alignment for GI: 254781115 and conserved domain: PRK01759
>PRK01759 glnD PII uridylyl-transferase; Provisional.
Probab=99.13 E-value=1.4e-09 Score=83.73 Aligned_cols=192 Identities=15% Similarity=0.115 Sum_probs=135.9
Q ss_pred CHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCC-C-CHHHHHHHHHHHHCCCCH-HHHHHHHHHCCCCCCC
Q ss_conf 100104210033201220136433111100012333321022-2-057768878864211018-9999987530023346
Q gi|254781115|r 158 HRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI-L-SSERIWSEINKLLEAKNP-LNAIVHMYNGGIFKEI 234 (416)
Q Consensus 158 ~rf~EDpLRiLRa~RFasrlg~f~id~~t~~ai~~~~~~L~~-i-S~ERI~~El~KiL~~~~~-~~~l~~L~~~gll~~i 234 (416)
T Consensus 345 ~~f~~~P~~il~lF~~~a~~~~~~i~~~tlr~lr~~~~~i~~~~~~~p~~r~~F~~il~~p~~~~~~l~~M~~~GvL~~y 424 (862)
T PRK01759 345 DCFTETPASILDLFFYLTQYPHAEIHSDTLRQLYIALHQLGQPLSELPAARERFLRLFNQPNAIKRALVPMHQYGVLTAY 424 (862)
T ss_pred CHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHH
T ss_conf 05652989999999999857799869779999999998567421008588999999982988579999999982878988
Q ss_pred CCCCCCCC------------HH--------HHHHHHHHHH---------H-CCCCCCHHHHHHHHCCCCCH---------
Q ss_conf 88701058------------57--------8987786776---------3-17880167666520477685---------
Q gi|254781115|r 235 FLDVQEIS------------LD--------QLSQVIEAEQ---------V-FEWKIDSLLRFIVLISWQDK--------- 275 (416)
Q Consensus 235 fpel~~~~------------~~--------~l~~~~~~~~---------~-~~~~~~~~lrla~Ll~~~~~--------- 275 (416)
T Consensus 425 iPef~~I~g~mQfDlfH~YTVDeHtl~~v~~l~~~~~~~~~~~~P~~~~i~~~l~~~~lL~LAaLfHDIgKGrggDHSel 504 (862)
T PRK01759 425 LPQWKHIEGLMQFDLFHIYTVDEHTLRVMLKLESFLDEETAEQHPICHQIFSQLSDRTLLYIAALFHDIAKGRGGDHAEL 504 (862)
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 47888774364754355784768999999999998613200104359999872465889999999999716788865899
Q ss_pred --HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf --78998875303425677778888754114333-------672466789987080245516989998640777601389
Q gi|254781115|r 276 --KSILSMAKKFSLPREIRYFLISFFNCNFNQKT-------LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346 (416)
Q Consensus 276 --~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (416)
T Consensus 505 GA~~a~~f~~r~gl~~~d~elv~wLV~~HLlMS~~AqrrDi~Dp~vI~~FA~~V~~~erL~~LylLTvADi~AT~p~~WN 584 (862)
T PRK01759 505 GAVDMAQFAQQHGFDPREIETMAWLVQEHLLMSITAQRRDIHDPEVVMNFAEEVQNQVRLDYLTCLTVADICATNETLWN 584 (862)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999998599999999999999989999999986289987999999997599999999999998787403811456
Q ss_pred HHH
Q ss_conf 999
Q gi|254781115|r 347 FIL 349 (416)
Q Consensus 347 ~~~ 349 (416)
T Consensus 585 ~WK 587 (862)
T PRK01759 585 SWK 587 (862)
T ss_pred HHH
T ss_conf 889