HHsearch alignment for GI: 254781115 and conserved domain: PRK13297
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional.
Probab=100.00 E-value=0 Score=482.18 Aligned_cols=344 Identities=19% Similarity=0.263 Sum_probs=253.9
Q ss_pred HHCCCEEEEEHHHHHHHHCCCCCCEEEE-EEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCEEEEEECCCCCCCCC
Q ss_conf 9789859997069988877889860899-980898999999987699562134314469999899888642134466768
Q gi|254781115|r 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD 101 (416)
Q Consensus 23 ~~~g~~~~~VGG~VRD~ll~~~~~DiD~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~di~~~R~e~~~~ 101 (416)
T Consensus 8 ~~aGm~~YLVGGaVRD~LLgr~~kD~D~VvtgAtPee~~~----~--g~~~VG~~F~v~--l~~~~~eE~alaRtE~k~g 79 (364)
T PRK13297 8 GVAGLQVYIVGGAVRDALLGLPAGDRDWVVVGATPEDMAR----R--GFIPVGGDFPVF--LHPRTKEEYALARTERKSG 79 (364)
T ss_pred CCCCCEEEEECCHHHHHHCCCCCCCEEEEECCCCHHHHHH----C--CCEEECCCEEEE--EECCCCEEEEEEEEEECCC
T ss_conf 1049869996609889974989988788647998999985----1--878528826999--9787554999998886378
Q ss_pred CCCCCCCC-C---HHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEEEEECC
Q ss_conf 87432233-2---0133210447800300200032101320000688878777642764310010421003320122013
Q gi|254781115|r 102 GRYAKVVF-T---RDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 (416)
Q Consensus 102 ~~~~~~~~-~---~~~~eDl~RRDFTINAla~~~~~~l~Dp~gG~~DL~~~~ir~v~~~~~rf~EDpLRiLRa~RFasrl 177 (416)
T Consensus 80 ~g~~gf~~~~~~~vtLEeDL~RRDFTINAmA~d~~G~LIDpfgG~~DL~~riLR~v~~---aF~EDPLRiLRaaRFAArl 156 (364)
T PRK13297 80 RGYKGFTFYTGADVTLEQDLQRRDLTVNAIARTPQGELVDPLDGVADVRARVLRHVGE---AFAEDPVRILRLGRFAARF 156 (364)
T ss_pred CCCCCCEEECCCCCCHHHHHHHCCCCHHEEEECCCCCEECCCCCHHHHHCCCEECCCC---CCCCCHHHHHHHHHHHHHC
T ss_conf 7889964206999888999874256100469999998851898899995867416888---7565869999999999981
Q ss_pred CCCCCCCCCHHHHHHH--HHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6433111100012333--32102220577688788642110189999987530023346887010585789877867763
Q gi|254781115|r 178 GEKNIDSDGLVASIKA--KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 (416)
Q Consensus 178 g~f~id~~t~~ai~~~--~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifpel~~~~~~~l~~~~~~~~~ 255 (416)
T Consensus 157 ~~F~I~~eT~~lm~~mv~~gel~~L~~ERvw~E~~k~L~~~~P~~~f~~L~~~gal~~~~Pe~~~~~~~~--~--~~d~~ 232 (364)
T PRK13297 157 GDFSIAPETMQLCRRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHDDAAVR--A--EIDRA 232 (364)
T ss_pred CCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCC--H--HHHHH
T ss_conf 6875888899999998827767664456899999999768885999999998587788591628622246--6--69999
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHCC---CHHHHHHHHH
Q ss_conf 1788016766652047768578998875303425677778888754114333-67246678998708---0245516989
Q gi|254781115|r 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT-LSIPEIKKLFYLYG---DKVMIAKLKI 331 (416)
Q Consensus 256 ~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~l~~ 331 (416)
T Consensus 233 ~~~~~~l~~r~a~l~~~~~~--~~~l~~rl~vP~~~~~la~~~~~~~~~~~~~~~~~~~~~l~~~~d~~r~per~~~~l~ 310 (364)
T PRK13297 233 AAAGLPLAGRYALLCRHTPE--RDALGRRLRAPVECMDQARLLPLAVDALAASATPAAQLDLIERCDALRKPERFDALLQ 310 (364)
T ss_pred HHCCCCHHHHHHHHHCCCCH--HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 75279818899988167834--8999998289899999999999999864234898999999997440059289999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 998640777601389999999877512888889887899965898777999999999999963
Q gi|254781115|r 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 (416)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~pI~G~dL~~~Gi~pGp~iG~iL~~l~~~~i~ 394 (416)
T Consensus 311 a~~~---~-~~~~~~~~~~~~~a~~-------~v~a~~i~~~~~~~~a~i~~a~~~aR~~aia 362 (364)
T PRK13297 311 AAAI---V-APVDLSAWRARVQAVR-------AIDAGAIARQCAGDPARIKPALRQARLQALG 362 (364)
T ss_pred HHHH---H-CCCCHHHHHHHHHHHH-------CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9864---1-4425699999999997-------5799999987279857899999999999974