HHsearch alignment for GI: 254781115 and conserved domain: PRK13297

>PRK13297 tRNA CCA-pyrophosphorylase; Provisional.
Probab=100.00  E-value=0  Score=482.18  Aligned_cols=344  Identities=19%  Similarity=0.263  Sum_probs=253.9

Q ss_pred             HHCCCEEEEEHHHHHHHHCCCCCCEEEE-EEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCEEEEEECCCCCCCCC
Q ss_conf             9789859997069988877889860899-980898999999987699562134314469999899888642134466768
Q gi|254781115|r   23 NKGEDKSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD  101 (416)
Q Consensus        23 ~~~g~~~~~VGG~VRD~ll~~~~~DiD~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~di~~~R~e~~~~  101 (416)
T Consensus         8 ~~aGm~~YLVGGaVRD~LLgr~~kD~D~VvtgAtPee~~~----~--g~~~VG~~F~v~--l~~~~~eE~alaRtE~k~g   79 (364)
T PRK13297          8 GVAGLQVYIVGGAVRDALLGLPAGDRDWVVVGATPEDMAR----R--GFIPVGGDFPVF--LHPRTKEEYALARTERKSG   79 (364)
T ss_pred             CCCCCEEEEECCHHHHHHCCCCCCCEEEEECCCCHHHHHH----C--CCEEECCCEEEE--EECCCCEEEEEEEEEECCC
T ss_conf             1049869996609889974989988788647998999985----1--878528826999--9787554999998886378


Q ss_pred             CCCCCCCC-C---HHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEEEEECC
Q ss_conf             87432233-2---0133210447800300200032101320000688878777642764310010421003320122013
Q gi|254781115|r  102 GRYAKVVF-T---RDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY  177 (416)
Q Consensus       102 ~~~~~~~~-~---~~~~eDl~RRDFTINAla~~~~~~l~Dp~gG~~DL~~~~ir~v~~~~~rf~EDpLRiLRa~RFasrl  177 (416)
T Consensus        80 ~g~~gf~~~~~~~vtLEeDL~RRDFTINAmA~d~~G~LIDpfgG~~DL~~riLR~v~~---aF~EDPLRiLRaaRFAArl  156 (364)
T PRK13297         80 RGYKGFTFYTGADVTLEQDLQRRDLTVNAIARTPQGELVDPLDGVADVRARVLRHVGE---AFAEDPVRILRLGRFAARF  156 (364)
T ss_pred             CCCCCCEEECCCCCCHHHHHHHCCCCHHEEEECCCCCEECCCCCHHHHHCCCEECCCC---CCCCCHHHHHHHHHHHHHC
T ss_conf             7889964206999888999874256100469999998851898899995867416888---7565869999999999981


Q ss_pred             CCCCCCCCCHHHHHHH--HHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             6433111100012333--32102220577688788642110189999987530023346887010585789877867763
Q gi|254781115|r  178 GEKNIDSDGLVASIKA--KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV  255 (416)
Q Consensus       178 g~f~id~~t~~ai~~~--~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifpel~~~~~~~l~~~~~~~~~  255 (416)
T Consensus       157 ~~F~I~~eT~~lm~~mv~~gel~~L~~ERvw~E~~k~L~~~~P~~~f~~L~~~gal~~~~Pe~~~~~~~~--~--~~d~~  232 (364)
T PRK13297        157 GDFSIAPETMQLCRRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHDDAAVR--A--EIDRA  232 (364)
T ss_pred             CCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCC--H--HHHHH
T ss_conf             6875888899999998827767664456899999999768885999999998587788591628622246--6--69999


Q ss_pred             CCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHCC---CHHHHHHHHH
Q ss_conf             1788016766652047768578998875303425677778888754114333-67246678998708---0245516989
Q gi|254781115|r  256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT-LSIPEIKKLFYLYG---DKVMIAKLKI  331 (416)
Q Consensus       256 ~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~l~~  331 (416)
T Consensus       233 ~~~~~~l~~r~a~l~~~~~~--~~~l~~rl~vP~~~~~la~~~~~~~~~~~~~~~~~~~~~l~~~~d~~r~per~~~~l~  310 (364)
T PRK13297        233 AAAGLPLAGRYALLCRHTPE--RDALGRRLRAPVECMDQARLLPLAVDALAASATPAAQLDLIERCDALRKPERFDALLQ  310 (364)
T ss_pred             HHCCCCHHHHHHHHHCCCCH--HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             75279818899988167834--8999998289899999999999999864234898999999997440059289999999


Q ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             998640777601389999999877512888889887899965898777999999999999963
Q gi|254781115|r  332 FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN  394 (416)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~pI~G~dL~~~Gi~pGp~iG~iL~~l~~~~i~  394 (416)
T Consensus       311 a~~~---~-~~~~~~~~~~~~~a~~-------~v~a~~i~~~~~~~~a~i~~a~~~aR~~aia  362 (364)
T PRK13297        311 AAAI---V-APVDLSAWRARVQAVR-------AIDAGAIARQCAGDPARIKPALRQARLQALG  362 (364)
T ss_pred             HHHH---H-CCCCHHHHHHHHHHHH-------CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9864---1-4425699999999997-------5799999987279857899999999999974