HHsearch alignment for GI: 254781115 and conserved domain: PRK13299
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional.
Probab=100.00 E-value=0 Score=677.02 Aligned_cols=384 Identities=25% Similarity=0.369 Sum_probs=323.9
Q ss_pred HHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCEEEEEEC
Q ss_conf 89999999997898599970699888778898608999808989999999876995621343144699998998886421
Q gi|254781115|r 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITT 93 (416)
Q Consensus 14 ~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~di~~ 93 (416)
T Consensus 8 ~a~~i~~~l~~~G~~ay~VGG~VRD~LLg~~~~DiDi~t~a~p~~~~~~f~~----~~~~g~~~Gtv~v~~~~~~~evtt 83 (394)
T PRK13299 8 KALPILEKIKEAGFEAYFVGGSVRDYLLGRPIHDVDIATSAYPEEVKAIFPR----TVDVGIEHGTVLVLENGEEYEVTT 83 (394)
T ss_pred HHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHH----HHHHHHCCCEEEEEECCEEEEEEE
T ss_conf 9999999999689839998879999985989999877269989999999886----504424268799988998898888
Q ss_pred CCCC-CCCCCCCC-CCCCCHHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEEE
Q ss_conf 3446-67688743-223320133210447800300200032101320000688878777642764310010421003320
Q gi|254781115|r 94 LRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 (416)
Q Consensus 94 ~R~e-~~~~~~~~-~~~~~~~~~eDl~RRDFTINAla~~~~~~l~Dp~gG~~DL~~~~ir~v~~~~~rf~EDpLRiLRa~ 171 (416)
T Consensus 84 ~R~e~~y~d~r~p~~v~f~~~i~eDl~RRDFTINAmA~~~~g~liDpf~G~~DL~~~~IR~vg~~~~rf~EDpLRiLRa~ 163 (394)
T PRK13299 84 FRTESEYVDYRRPSSVTFVRSLEEDLKRRDFTINAIAMDENGEIIDLFDGLEDLENRLIRAVGKAEERFQEDALRMMRAL 163 (394)
T ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHCCCCCEECCCCCHHHHHHCHHHHCCCHHHHHHHCHHHHHHHH
T ss_conf 73366655668864241136799998825987103431169987689899999981723522657664233579999999
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 12201364331111000123333210222057768878864211018999998753002334688701058578987786
Q gi|254781115|r 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 (416)
Q Consensus 172 RFasrlg~f~id~~t~~ai~~~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifpel~~~~~~~l~~~~~ 251 (416)
T Consensus 164 RFaa~l~-F~ie~~T~~ai~~~~~~l~~vS~ERI~~El~kiL~~~~~~~~l~~l~~~gl~~~-lp~l~~~-~~~l~~~~~ 240 (394)
T PRK13299 164 RFASQLG-FDLETETFEAMKTQAPLLEKISVERIFVEFEKLLLGPHWRKGLKALIETKAYNY-LPGLKGK-EENLLKLTQ 240 (394)
T ss_pred HHHHHCC-CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHH-CCCCCCC-HHHHHHHHH
T ss_conf 9998737-788838999999988764317899999999999839988999999998788652-9210234-799999998
Q ss_pred HHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 77631788016766652047768578998875303425677778888754114333672466789987080245516989
Q gi|254781115|r 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 (416)
Q Consensus 252 ~~~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 331 (416)
T Consensus 241 ~~~--~~~~~~~~~~~~ll~~~~~~~~~~~l~~lk~s~~~~~~v~~l~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~l 316 (394)
T PRK13299 241 LLW--FSFETSEQAWAALLIALGIEDISSFLKAWKLSNKFIKDVVALVQAYRLRSERSWE--KLDLYQYGKEIALLAEDI 316 (394)
T ss_pred HHH--CCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHCHHHHHHHHHH
T ss_conf 875--1689748999999997783889999998099999999999999998742248840--999998477989859999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH-CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99864077760138999999987751288888988789996-58987779999999999999638888898999999999
Q gi|254781115|r 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 (416)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~pI~G~dL~~-~Gi~pGp~iG~iL~~l~~~~i~~~~~n~~e~l~~~lk~ 410 (416)
T Consensus 317 ~~~~----~~~~~~~~l~~~~~~l~i~~~~~l~I~G~DLm~~lG~~pGp~iG~iL~~l~~~~l~g~~~n~~eaLl~~l~~ 392 (394)
T PRK13299 317 RQAR----GLSVNLEEIQELYQALPIHSKKELAINGGDLLKHFGKKPGPWLGETLRKIEEAIVTGELENEKEAILEWLDE 392 (394)
T ss_pred HHHC----CCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9862----364479999999974601458789847899999709992389999999999998169999969999999997
Q ss_pred HH
Q ss_conf 98
Q gi|254781115|r 411 LI 412 (416)
Q Consensus 411 l~ 412 (416)
T Consensus 393 ~l 394 (394)
T PRK13299 393 HL 394 (394)
T ss_pred HC
T ss_conf 49