HHsearch alignment for GI: 254781115 and conserved domain: TIGR02692
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase; InterPro: IPR014065 The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3 -end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family IPR002646 from INTERPRO (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase..
Probab=100.00 E-value=0 Score=579.57 Aligned_cols=399 Identities=22% Similarity=0.323 Sum_probs=335.7
Q ss_pred CHHCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCC-CEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEEC
Q ss_conf 522199889999999997898599970699888778898-6089998089899999998769956213431446999989
Q gi|254781115|r 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 (416)
Q Consensus 7 ~~~~~~~~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~-~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 85 (416)
T Consensus 8 ~~~~~~~~~~~L~~~F~~~Gh~L~LVGGsVRDAlLgrl~~~DLDFTTdArP~~~~~il~~~a~~vWd~G~~fGTv~a~~~ 87 (472)
T TIGR02692 8 ALLELAPVLAELAAAFAAAGHELYLVGGSVRDALLGRLGSHDLDFTTDARPEEVLAILRPWADAVWDTGIAFGTVGAEKD 87 (472)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 88766688999999998649858861661454313656776676578998689999997766677552102121223443
Q ss_pred CEEEEEECCCCCCCC-CCCCCCCCCCHHHHHHCCCCCCCCCCEEECCC--C--HHHHHCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 988864213446676-88743223320133210447800300200032--1--013200006888787776427643100
Q gi|254781115|r 86 KKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQ--G--KVIDYVGGLNDLRNRTIKFIGDAHHRI 160 (416)
Q Consensus 86 ~~~~di~~~R~e~~~-~~~~~~~~~~~~~~eDl~RRDFTINAla~~~~--~--~l~Dp~gG~~DL~~~~ir~v~~~~~rf 160 (416)
T Consensus 88 ~~~~EiTTyRsD~Yd~~sR~P~V~FGd~Le~DL~RRDFtvNAmA~~~~~~G~~~f~Dp~gGl~~l~~~~L~TP~~Pe~SF 167 (472)
T TIGR02692 88 GQQVEITTYRSDSYDGTSRKPEVEFGDTLEGDLIRRDFTVNAMAVRIAADGSLEFVDPLGGLDDLLAKVLDTPATPEQSF 167 (472)
T ss_pred CCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCEECCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 70789886003146777887414448754456231302462566421057955886426779999998405788743567
Q ss_pred HCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 10421003320122013643311110001233332102220577688788642110189999987530023346887010
Q gi|254781115|r 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 (416)
Q Consensus 161 ~EDpLRiLRa~RFasrlg~f~id~~t~~ai~~~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifpel~~ 240 (416)
T Consensus 168 ~DDPLRMLRAARf~sQLg-F~v~~~v~~Am~~mA~~i~~isAERv~~EL~Kll~~~~P~~Gi~llV~TGla~~vlPE~~a 246 (472)
T TIGR02692 168 SDDPLRMLRAARFVSQLG-FEVAPRVRAAMTEMADRIEIISAERVRDELDKLLLGDHPREGIDLLVETGLADRVLPEIPA 246 (472)
T ss_pred CCCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHCCCCCCH
T ss_conf 888168999999877607-6124789999999887743324788888874201477836678998740401110467620
Q ss_pred CCH----------------HHHHHHHHHHHH--CCCCCCHHHHHHHHCCCCCHHH----------------------HHH
Q ss_conf 585----------------789877867763--1788016766652047768578----------------------998
Q gi|254781115|r 241 ISL----------------DQLSQVIEAEQV--FEWKIDSLLRFIVLISWQDKKS----------------------ILS 280 (416)
Q Consensus 241 ~~~----------------~~l~~~~~~~~~--~~~~~~~~lrla~Ll~~~~~~~----------------------~~~ 280 (416)
T Consensus 247 lrl~~DEHh~HKDVY~HSL~VL~QAi~~e~~r~~~~~PDLvLRlAALLHDiGKP~TR~~~~~G~VSFhhHevVGAKm~rk 326 (472)
T TIGR02692 247 LRLEIDEHHQHKDVYEHSLTVLRQAIDLEKERFEDDGPDLVLRLAALLHDIGKPATRRFEPDGRVSFHHHEVVGAKMVRK 326 (472)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHH
T ss_conf 24132233567547889999999999998861557888257888998503778523451879967656522056789999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 87530342567777888875411433-----3672466789987080245516989998640777601389999999877
Q gi|254781115|r 281 MAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 (416)
Q Consensus 281 ~~~rlkl~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (416)
T Consensus 327 R~~aLky~k~~~~~Vs~Lv~LHLRFhGYg~g~WTDSAVRRYV~DAG~~L~--RLH~L~RaDcTTRNkrkA~rL~~~YD~L 404 (472)
T TIGR02692 327 RLRALKYSKQVVEDVSRLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLE--RLHKLVRADCTTRNKRKAERLQAAYDDL 404 (472)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH--HCCEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99851487578999999999751010068994022445641651001001--3010011576600368999987523379
Q ss_pred ----------HHCCCCCCCCCHHHHHH-CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf ----------51288888988789996-589877799999999999996388888989999999
Q gi|254781115|r 356 ----------IHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 (416)
Q Consensus 356 ----------~~~~~p~~pI~G~dL~~-~Gi~pGp~iG~iL~~l~~~~i~~~~~n~~e~l~~~l 408 (416)
T Consensus 405 E~RIA~l~~~E~L~~vRPDLDG~~iM~iL~i~pG~~VG~A~~yL~eLRL~~GPl~~~~A~~~L~ 468 (472)
T TIGR02692 405 EERIAELAAKEDLDAVRPDLDGNEIMEILGIKPGPEVGKAWKYLKELRLERGPLEREEAIAELL 468 (472)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 9999988853316631887784799997089998757899999987212578988789999998