HHsearch alignment of GI: 254781115 and MMDB domain: 1vfg_A_1-126
>1vfg_A (A:1-126) A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus}
Probab=100.00 E-value=1.2e-36 Score=264.40 Aligned_cols=124 Identities=24% Similarity=0.259 Sum_probs=118.3
Q ss_pred HHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCEEEEEECCCCC
Q ss_conf 99999978985999706998887788986089998089899999998769956213431446999989988864213446
Q gi|254781115|r 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD 97 (416)
Q Consensus 18 i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~di~~~R~e 97 (416)
|++.+++.|+++|+|||||||+|||++|+|+||+|++.|+++.+.|.+.....++.+.+|||+++..++..+|||++|+|
T Consensus 2 i~~~l~~~g~~~ylVGG~VRD~LLg~~~~DiDi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~iei~~~R~e 81 (126)
T 1vfg_A 2 VGQIAKEMGLRAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKLEFATARRE 81 (126)
T ss_dssp HHHHHHHTTCCEEEETHHHHHHHTTCCCSEEEEEESSCHHHHHHHHHHHHTCCCEEETTTTEEEEEETTEEEEEEECCSC
T ss_pred HHHHHHHCCCEEEEECCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCEECCCCCEEEEEECCEEEEEEEECCC
T ss_conf 47899976996999764999987699799967997098699999998767986004686647999989889999730232
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHH
Q ss_conf 67688743223320133210447800300200032101320000688
Q gi|254781115|r 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 (416)
Q Consensus 98 ~~~~~~~~~~~~~~~~~eDl~RRDFTINAla~~~~~~l~Dp~gG~~D 144 (416)
.|+.+++.++++.++|++||.|||||||||||++++ |||||++|
T Consensus 82 ~~~~~~~~~~~~~~~l~~Dl~rRDFTINAla~~~~~---Dp~~G~~D 125 (126)
T 1vfg_A 82 TYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNL---EDYGTLID 125 (126)
T ss_dssp C---------CCCCCHHHHHHTSSBGGGSCEEECCG---GGTTCEEC
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHCCHHHHCCCCCC---CCCCEEEC
T ss_conf 356787312211443365042013022000002565---56775555