HHsearch alignment of GI: 254781115 and MMDB domain: 1vfg_A_127-222
>1vfg_A (A:127-222) A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus}
Probab=99.87 E-value=4.6e-24 Score=180.20 Aligned_cols=94 Identities=26% Similarity=0.343 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHH--HCCCCCHHHHHHHHHHHHCCC
Q ss_conf 000688878777642764310010421003320122013643311110001233332--102220577688788642110
Q gi|254781115|r 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAK 216 (416)
Q Consensus 139 ~gG~~DL~~~~ir~v~~~~~rf~EDpLRiLRa~RFasrlg~f~id~~t~~ai~~~~~--~L~~iS~ERI~~El~KiL~~~ 216 (416)
|||++||++|+||++|++ +|.|||+|||||+||+++|| |.++++|..+|++.++ .+.++|+|||++|+.||+.++
T Consensus 1 f~G~~DL~~~~lr~~~~~--~f~eDPlRilR~~Rfaa~~g-f~i~~~t~~~i~~~~~~~~l~~is~eRi~~El~kil~~~ 77 (96)
T 1vfg_A 1 FGGLRDLKDKVIRVLHPV--SFIEDPVRILRALRFAGRLN-FKLSRSTEKLLKQAVNLGLLKEAPRGRLINEIKLALRED 77 (96)
T ss_dssp SCHHHHHHTTEECBSSTT--HHHHCTTHHHHHHHHHHHHT-CEECHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHH--HHHHCHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 240999977766655788--98757888899999988720-145530247899986410125688888732355543356
Q ss_pred CHHHHHHHHHHCCCCCCCC
Q ss_conf 1899999875300233468
Q gi|254781115|r 217 NPLNAIVHMYNGGIFKEIF 235 (416)
Q Consensus 217 ~~~~~l~~L~~~gll~~if 235 (416)
+|..+++.|.++|+++.+|
T Consensus 78 ~~~~~l~~l~~~gll~~lf 96 (96)
T 1vfg_A 78 RFLEILELYRKYRVLEEII 96 (96)
T ss_dssp SHHHHHHHHHHTTCHHHHS
T ss_pred CHHHHHHHHHHHCHHHHHC
T ss_conf 7899999999817399966