Query gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 416
No_of_seqs 186 out of 2831
Neff 9.2
Searched_HMMs 33803
Date Wed Jun 1 21:56:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781115.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1ou5_A TRNA CCA-adding enzyme 100.0 1.4E-45 0 324.4 6.7 150 8-157 52-202 (202)
2 >3h38_A TRNA nucleotidyl trans 100.0 1.2E-38 3.5E-43 277.8 12.5 132 16-147 24-160 (160)
3 >1miw_A TRNA CCA-adding enzyme 100.0 1E-37 3E-42 271.6 11.5 131 13-147 6-138 (138)
4 >1vfg_A A-adding enzyme, poly 100.0 1.2E-36 3.5E-41 264.4 10.9 124 18-144 2-125 (126)
5 >1vfg_A A-adding enzyme, poly 99.9 4.6E-24 1.3E-28 180.2 0.4 94 139-235 1-96 (96)
6 >1miw_A TRNA CCA-adding enzyme 99.8 1.9E-21 5.5E-26 162.7 0.6 92 148-241 1-92 (104)
7 >3h38_A TRNA nucleotidyl trans 99.8 3.5E-20 1E-24 154.2 -0.6 85 148-235 1-87 (87)
8 >1ou5_A TRNA CCA-adding enzyme 99.7 1E-18 3E-23 144.4 2.0 76 158-234 1-79 (80)
9 >1ou5_A TRNA CCA-adding enzyme 99.7 1.1E-17 3.2E-22 137.5 6.7 164 235-410 1-165 (166)
10 >1miw_A TRNA CCA-adding enzyme 98.9 4.2E-09 1.2E-13 80.1 7.2 53 362-414 2-55 (60)
11 >2fcl_A Hypothetical protein T 94.7 0.22 6.5E-06 28.4 7.8 86 7-93 10-106 (141)
12 >1r89_A TRNA nucleotidyltransf 89.7 1.4 4.1E-05 23.1 8.1 83 14-97 13-104 (127)
13 >1miw_A TRNA CCA-adding enzyme 84.9 1.3 3.8E-05 23.3 4.1 71 263-337 7-80 (102)
14 >2hek_A Hypothetical protein; 53.9 13 0.0004 16.5 3.7 66 208-277 18-90 (221)
15 >2w9m_A Polymerase X; SAXS, DN 47.3 17 0.0005 15.8 4.1 36 27-66 62-98 (123)
16 >1kny_A Kntase, kanamycin nucl 38.9 23 0.00067 14.9 4.1 32 22-55 27-58 (126)
17 >2q14_A Phosphohydrolase; BT42 37.7 9.4 0.00028 17.5 0.4 69 209-281 24-106 (190)
18 >2ihm_A POL MU, DNA polymerase 37.1 24 0.00071 14.8 6.9 47 18-68 37-94 (161)
19 >3epr_A Hydrolase, haloacid de 33.6 17 0.00051 15.7 1.2 105 12-128 23-141 (154)
20 >1yll_A PA5104, conserved hypo 32.8 13 0.0004 16.5 0.5 15 164-178 5-20 (95)
21 >2fmp_A DNA polymerase beta; n 31.8 29 0.00086 14.2 7.5 48 17-68 42-104 (143)
22 >3irh_A HD domain protein; pho 28.2 33 0.00099 13.8 2.7 70 209-282 55-145 (247)
23 >1q5x_A Regulator of RNAse E a 27.8 14 0.00043 16.3 -0.0 15 34-48 46-60 (161)
24 >2pcn_A S-adenosylmethionine:2 27.6 15 0.00044 16.2 0.0 22 18-39 76-97 (161)
25 >1jms_A Terminal deoxynucleoti 27.0 35 0.001 13.7 7.2 27 25-55 41-68 (157)
26 >1nln_A Adenain; thiol hydrola 25.5 31 0.0009 14.1 1.3 21 126-146 57-81 (204)
27 >1vi4_A Regulator of ribonucle 24.8 18 0.00052 15.7 -0.0 21 19-39 82-102 (174)
28 >3fpn_A Geobacillus stearother 22.5 42 0.0013 13.1 1.9 39 15-53 36-79 (119)
29 >1ev7_A Type IIE restriction e 22.1 28 0.00082 14.4 0.5 40 1-40 1-40 (170)
30 >3h38_A TRNA nucleotidyl trans 22.0 43 0.0013 13.0 7.7 105 254-368 25-134 (134)
31 >1k0i_A P-hydroxybenzoate hydr 21.0 45 0.0013 13.0 1.4 21 196-216 112-132 (149)
No 1
>>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} (A:1-202)
Probab=100.00 E-value=1.4e-45 Score=324.44 Aligned_cols=150 Identities=38% Similarity=0.627 Sum_probs=141.0
Q ss_pred HHCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCC-EECCCCCCCEEEEEECC
Q ss_conf 22199889999999997898599970699888778898608999808989999999876995-62134314469999899
Q gi|254781115|r 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK-VIPTSISYGTIKIICRK 86 (416)
Q Consensus 8 ~~~~~~~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gt~~~~~~~ 86 (416)
.+.....+..|.+.+.+.|+++|+|||||||+|||++++||||+|+++|+++++.|.+.+.. ++..++.|||+++..++
T Consensus 52 ~~~~~~~l~~i~~~~~~~g~~~ylVGG~VRD~LLg~~~~DiDi~~~~~~~~~~~~l~~~~~~~~~~~~~~f~t~~~~~~~ 131 (202)
T 1ou5_A 52 QSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHE 131 (202)
T ss_dssp HHHSCTTHHHHHHHHHHTTCCEEEESTTTHHHHHTSCCSSCEEEESSCHHHHHHHHTTTTCCBCCCCCTTCCCEEECTTT
T ss_pred HHHCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECC
T ss_conf 53368899999999998799899972699998779889998999948899999999974981147678412289999899
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 88864213446676887432233201332104478003002000321013200006888787776427643
Q gi|254781115|r 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAH 157 (416)
Q Consensus 87 ~~~di~~~R~e~~~~~~~~~~~~~~~~~eDl~RRDFTINAla~~~~~~l~Dp~gG~~DL~~~~ir~v~~~~ 157 (416)
..+||+++|+|+|+++++.|+++.++|++||+|||||||||||+++|+|+|||||++||++|+||+|++|+
T Consensus 132 ~~idi~~~R~e~y~~~~~~p~v~~~~l~eDl~RRDFTINAla~~l~~~liD~~gG~~DL~~~~iR~v~~p~ 202 (202)
T 1ou5_A 132 ENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAK 202 (202)
T ss_dssp TCEEEEECCS------------SSCCSSCCGGGSSBGGGSCEECSSCBEECSSSHHHHTTTTCCCBSSTTT
T ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCEECCCCCHHHHHCCCEEECCCCH
T ss_conf 78999999876215898886235676455577558862115762599570788877678468245547947
No 2
>>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* (A:1-160)
Probab=100.00 E-value=1.2e-38 Score=277.81 Aligned_cols=132 Identities=26% Similarity=0.263 Sum_probs=121.8
Q ss_pred HHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEE-EECCEEEEEECC
Q ss_conf 9999999978985999706998887788986089998089899999998769956213431446999-989988864213
Q gi|254781115|r 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI-ICRKKYFDITTL 94 (416)
Q Consensus 16 ~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~-~~~~~~~di~~~ 94 (416)
..+.+.+.++|+++|+|||||||+|||++++||||+|++.|+++++.|.+...+...++.+|||+.+ ..++..+||+++
T Consensus 24 ~~l~~~~~~~g~~~ylVGG~VRD~Llg~~~~DiDi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~idi~~~ 103 (160)
T 3h38_A 24 RLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFLPGKLVKHDKFMTASLFLKGGLRIDIATA 103 (160)
T ss_dssp HHHHHHHHHTTCCEEEETHHHHHHHHTCCCCCEEEEESSCHHHHHHHHHTTSCEEEECCSSTTEEEEEETTSCEEEEEEC
T ss_pred HHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEECCEEEEEEEEEECCEEEEEECC
T ss_conf 99999999749969996369999877988999899967988999999998679859965707999999979879997544
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCC----CHHHHHCCCHHHHHH
Q ss_conf 44667688743223320133210447800300200032----101320000688878
Q gi|254781115|r 95 RSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGGLNDLRN 147 (416)
Q Consensus 95 R~e~~~~~~~~~~~~~~~~~eDl~RRDFTINAla~~~~----~~l~Dp~gG~~DL~~ 147 (416)
|+|.|+.+++.++++..++++||.|||||||||||++. |+|+|||||++||++
T Consensus 104 R~e~~~~~~~~~~~~~~~l~eDl~rRDFTINAla~~l~~~~~g~liDp~~G~~DL~~ 160 (160)
T 3h38_A 104 RLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPKDFGLLIDFFGGYRDLKE 160 (160)
T ss_dssp CEECCSSSSSCCEESCCCHHHHHHTSSBGGGSCEEECSGGGTTEEECSSSHHHHHHT
T ss_pred CCCCCCCCCCCCEEEECCHHHHHHCCCHHHHHHHHCCCCCCCCEEECCCCCHHHHHH
T ss_conf 122355789898334256266442010666665403456776424246773576766
No 3
>>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} (A:1-138)
Probab=100.00 E-value=1e-37 Score=271.60 Aligned_cols=131 Identities=36% Similarity=0.593 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCEEEEEE
Q ss_conf 88999999999789859997069988877889860899980898999999987699562134314469999899888642
Q gi|254781115|r 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDIT 92 (416)
Q Consensus 13 ~~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~di~ 92 (416)
+.+++|++.++++|+++|+|||||||+|||++|+|+||+|+++++++.+.|. +.++.+..|||+.+..++..+|++
T Consensus 6 ~~~~~i~~~l~~~g~~~ylVGG~VRD~LLg~~~~D~Di~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T 1miw_A 6 QEALGIIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVXAIFP----KTIDVGSKHGTVVVVHKGKAYEVT 81 (138)
T ss_dssp HHHHHHHHHHHHTTCCEEEESHHHHHHHHTCCCCCCEEEESSCHHHHHHHCS----SEEEEEGGGTEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCEEEEECCCHHHHHHHHH----HHHCCCCCCCEEEEEECCEEEEEE
T ss_conf 9999999999978996999888999998599999989985798999999866----532236446669998889899999
Q ss_pred CCCCCCCCCC-CCCC-CCCCHHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHHHH
Q ss_conf 1344667688-7432-23320133210447800300200032101320000688878
Q gi|254781115|r 93 TLRSDLITDG-RYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 (416)
Q Consensus 93 ~~R~e~~~~~-~~~~-~~~~~~~~eDl~RRDFTINAla~~~~~~l~Dp~gG~~DL~~ 147 (416)
++|+|.|..+ +.|. +.++++|++||.|||||||||||+++|+|+|||||++||++
T Consensus 82 ~~R~e~~~~~~~~~~~~~~~~~l~~Dl~rRDFTINAla~~~~~~liDp~gG~~DLkr 138 (138)
T 1miw_A 82 TFKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTXNAIAXDEYGTIIDPFGGREAIRR 138 (138)
T ss_dssp ECEECC---------CCEECSCHHHHHHTSSBSGGGCEECTTCCEECTTCHHHHHHH
T ss_pred EEEECCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCEEECCCCCEEECCCCCHHHHC
T ss_conf 998204556775012204565567777633663201035799987706999557870
No 4
>>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} (A:1-126)
Probab=100.00 E-value=1.2e-36 Score=264.40 Aligned_cols=124 Identities=24% Similarity=0.259 Sum_probs=118.3
Q ss_pred HHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCEEEEEECCCCC
Q ss_conf 99999978985999706998887788986089998089899999998769956213431446999989988864213446
Q gi|254781115|r 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD 97 (416)
Q Consensus 18 i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~di~~~R~e 97 (416)
|++.+++.|+++|+|||||||+|||++|+|+||+|++.|+++.+.|.+.....++.+.+|||+++..++..+|||++|+|
T Consensus 2 i~~~l~~~g~~~ylVGG~VRD~LLg~~~~DiDi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~iei~~~R~e 81 (126)
T 1vfg_A 2 VGQIAKEMGLRAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKLEFATARRE 81 (126)
T ss_dssp HHHHHHHTTCCEEEETHHHHHHHTTCCCSEEEEEESSCHHHHHHHHHHHHTCCCEEETTTTEEEEEETTEEEEEEECCSC
T ss_pred HHHHHHHCCCEEEEECCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCEECCCCCEEEEEECCEEEEEEEECCC
T ss_conf 47899976996999764999987699799967997098699999998767986004686647999989889999730232
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHH
Q ss_conf 67688743223320133210447800300200032101320000688
Q gi|254781115|r 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 (416)
Q Consensus 98 ~~~~~~~~~~~~~~~~~eDl~RRDFTINAla~~~~~~l~Dp~gG~~D 144 (416)
.|+.+++.++++.++|++||.|||||||||||++++ |||||++|
T Consensus 82 ~~~~~~~~~~~~~~~l~~Dl~rRDFTINAla~~~~~---Dp~~G~~D 125 (126)
T 1vfg_A 82 TYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNL---EDYGTLID 125 (126)
T ss_dssp C---------CCCCCHHHHHHTSSBGGGSCEEECCG---GGTTCEEC
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHCCHHHHCCCCCC---CCCCEEEC
T ss_conf 356787312211443365042013022000002565---56775555
No 5
>>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} (A:127-222)
Probab=99.87 E-value=4.6e-24 Score=180.20 Aligned_cols=94 Identities=26% Similarity=0.343 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHH--HCCCCCHHHHHHHHHHHHCCC
Q ss_conf 000688878777642764310010421003320122013643311110001233332--102220577688788642110
Q gi|254781115|r 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAK 216 (416)
Q Consensus 139 ~gG~~DL~~~~ir~v~~~~~rf~EDpLRiLRa~RFasrlg~f~id~~t~~ai~~~~~--~L~~iS~ERI~~El~KiL~~~ 216 (416)
|||++||++|+||++|++ +|.|||+|||||+||+++|| |.++++|..+|++.++ .+.++|+|||++|+.||+.++
T Consensus 1 f~G~~DL~~~~lr~~~~~--~f~eDPlRilR~~Rfaa~~g-f~i~~~t~~~i~~~~~~~~l~~is~eRi~~El~kil~~~ 77 (96)
T 1vfg_A 1 FGGLRDLKDKVIRVLHPV--SFIEDPVRILRALRFAGRLN-FKLSRSTEKLLKQAVNLGLLKEAPRGRLINEIKLALRED 77 (96)
T ss_dssp SCHHHHHHTTEECBSSTT--HHHHCTTHHHHHHHHHHHHT-CEECHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHH--HHHHCHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 240999977766655788--98757888899999988720-145530247899986410125688888732355543356
Q ss_pred CHHHHHHHHHHCCCCCCCC
Q ss_conf 1899999875300233468
Q gi|254781115|r 217 NPLNAIVHMYNGGIFKEIF 235 (416)
Q Consensus 217 ~~~~~l~~L~~~gll~~if 235 (416)
+|..+++.|.++|+++.+|
T Consensus 78 ~~~~~l~~l~~~gll~~lf 96 (96)
T 1vfg_A 78 RFLEILELYRKYRVLEEII 96 (96)
T ss_dssp SHHHHHHHHHHTTCHHHHS
T ss_pred CHHHHHHHHHHHCHHHHHC
T ss_conf 7899999999817399966
No 6
>>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} (A:139-242)
Probab=99.81 E-value=1.9e-21 Score=162.73 Aligned_cols=92 Identities=27% Similarity=0.318 Sum_probs=85.9
Q ss_pred HHHHHCCCCCCHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 77764276431001042100332012201364331111000123333210222057768878864211018999998753
Q gi|254781115|r 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 (416)
Q Consensus 148 ~~ir~v~~~~~rf~EDpLRiLRa~RFasrlg~f~id~~t~~ai~~~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~ 227 (416)
|+||++|+|.++|.|||+|||||+||+++|| |.++++|..+|+++++.+..+|+|||+.|+.||+.++++..++..|.+
T Consensus 1 r~iR~~~~~~~~f~eDPlRiLR~~Rfaa~~~-f~i~~~t~~~i~~~~~~i~~v~~eRi~~El~kll~~~~~~~~l~~l~~ 79 (104)
T 1miw_A 1 RIIRTVGEAEKRFREDALRXXRAVRFVSELG-FALAPDTEQAIVQNAPLLAHISVERXTXEXEKLLGGPFAARALPLLAE 79 (104)
T ss_dssp TEECBSSCHHHHHHHCTHHHHHHHHHHHHHC-CEECHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 6024457756663032899999999986169-864621556542122211578888999999999765579999999998
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 00233468870105
Q gi|254781115|r 228 GGIFKEIFLDVQEI 241 (416)
Q Consensus 228 ~gll~~ifpel~~~ 241 (416)
+|+++.++ ++...
T Consensus 80 ~g~l~~lp-e~~~~ 92 (104)
T 1miw_A 80 TGLNAYLP-GLAGK 92 (104)
T ss_dssp STTTTSST-TCSSC
T ss_pred CCCHHHCC-CCCCH
T ss_conf 49686382-73210
No 7
>>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* (A:161-247)
Probab=99.76 E-value=3.5e-20 Score=154.23 Aligned_cols=85 Identities=28% Similarity=0.398 Sum_probs=79.0
Q ss_pred HHHHHCCCCCCHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHH--HCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 777642764310010421003320122013643311110001233332--102220577688788642110189999987
Q gi|254781115|r 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHM 225 (416)
Q Consensus 148 ~~ir~v~~~~~rf~EDpLRiLRa~RFasrlg~f~id~~t~~ai~~~~~--~L~~iS~ERI~~El~KiL~~~~~~~~l~~L 225 (416)
|+||++|++ +|.|||+|||||+||+++|| |.++++|..+|++.++ .++.+|+|||+.|+.||+.+++|..++..|
T Consensus 1 G~lr~~~~~--~f~eDPlRilRa~Rfaarlg-f~i~~~t~~~i~~~~~~~~l~~is~eRi~~El~kll~~~~~~~~l~~l 77 (87)
T 3h38_A 1 GVIRVLHTL--SFVDDPTRILRAIRFEQRFD-FRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRM 77 (87)
T ss_dssp TEECBSSTT--HHHHCTTHHHHHHHHHHHTT-CEECHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHH--HHHHCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 665422467--77625078899999976214-565504667888863012111355088999999876313378999999
Q ss_pred HHCCCCCCCC
Q ss_conf 5300233468
Q gi|254781115|r 226 YNGGIFKEIF 235 (416)
Q Consensus 226 ~~~gll~~if 235 (416)
.++|++..+|
T Consensus 78 ~~~gll~~~f 87 (87)
T 3h38_A 78 AQFDVIKHLF 87 (87)
T ss_dssp HHTTHHHHHS
T ss_pred HHHHCCCCCC
T ss_conf 9874111027
No 8
>>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} (A:203-282)
Probab=99.72 E-value=1e-18 Score=144.42 Aligned_cols=76 Identities=37% Similarity=0.572 Sum_probs=69.4
Q ss_pred CHHHCCCCCEEEEEEEEECCCCCCCCCCCH---HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 100104210033201220136433111100---01233332102220577688788642110189999987530023346
Q gi|254781115|r 158 HRILEDYLRILRFFRFFAHYGEKNIDSDGL---VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 (416)
Q Consensus 158 ~rf~EDpLRiLRa~RFasrlg~f~id~~t~---~ai~~~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~i 234 (416)
+||.|||||||||+||+++|| |.++++|. .++.++++.+.++|+|||++|+.||+.+++|..++..|.++|++++|
T Consensus 1 ~sf~eDPlRilRa~RFaarl~-f~i~~~~~~~~~~~~~~~~~l~~is~eRi~~El~kll~~~~~~~~l~~l~~~gll~~i 79 (80)
T 1ou5_A 1 QRIQEDYLRILRYFRFYGRIV-DKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYI 79 (80)
T ss_dssp TTSSSCTTHHHHHHHHHHHSC-SSSSCCCHHHHHHHHHSCTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHHHTTCGGGG
T ss_pred HHHHHCCHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
T ss_conf 876436218999999987400-0001120899999998763304478899999999997689889999999986867663
No 9
>>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} (A:283-448)
Probab=99.72 E-value=1.1e-17 Score=137.51 Aligned_cols=164 Identities=16% Similarity=0.286 Sum_probs=122.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCH-HHH
Q ss_conf 8870105857898778677631788016766652047768578998875303425677778888754114333672-466
Q gi|254781115|r 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI-PEI 313 (416)
Q Consensus 235 fpel~~~~~~~l~~~~~~~~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~~~~-~~~ 313 (416)
||+..+ .+.+.+..+. ......+++++|++|+|+.+ .+..++++|++|++.++.+..+...+........ ...
T Consensus 1 lP~~~~--~~~~~~~l~~--~~~~~~~~~~~laaL~~~~~--~~~~~l~~Lkls~~~~~~i~~l~~~~~~~~~~~~~~~~ 74 (166)
T 1ou5_A 1 LPANAS--LEEFDKVSKN--VDGFSPKPVTLLASLFKVQD--DVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDP 74 (166)
T ss_dssp CCCCSC--CHHHHHHHHH--HTTSCCCHHHHHGGGCCSTT--TTHHHHHHHCCCTTHHHHHHHHTTTTTTTSCCCSSSST
T ss_pred CHHHHH--HHHHHHHHHH--HHHCCCHHHHHHHHHHCCHH--HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 076666--8899999999--85257036678999861224--57789987521499999999999999999872020547
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 78998708024551698999864077760138999999987751288888988789996589877799999999999996
Q gi|254781115|r 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393 (416)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~pI~G~dL~~~Gi~pGp~iG~iL~~l~~~~i 393 (416)
.+.++.++.+.......+..+.. .....+...+++...+..|.++|||+|||++|++|||++|++|++++++|+
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~G~DLi~lG~~~Gp~ig~iL~~l~~~~l 148 (166)
T 1ou5_A 75 LKPYQDFIIDSREPDATTRVCEL------LKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWK 148 (166)
T ss_dssp THHHHHHHHHCCSTTHHHHHHHH------HHHHTCHHHHHHHTTCCC---------------------------------
T ss_pred HHHHHHHHHHCCCCHHHHHHHHH------HHCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999851362679999998------754478999999971788999919999987879703899999999999999
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 38888898999999999
Q gi|254781115|r 394 NSSFQLSQEDLHHLLRK 410 (416)
Q Consensus 394 ~~~~~n~~e~l~~~lk~ 410 (416)
+|+++|+++++..++++
T Consensus 149 ~~~~~n~ke~ll~~~k~ 165 (166)
T 1ou5_A 149 KSGYQMEKDELLSYIKK 165 (166)
T ss_dssp -----------------
T ss_pred HCCCCCCHHHHHHHHCC
T ss_conf 78499999999998454
No 10
>>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} (A:345-404)
Probab=98.90 E-value=4.2e-09 Score=80.07 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=48.3
Q ss_pred CCCCCHHHHHH-CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 88988789996-589877799999999999996388888989999999999874
Q gi|254781115|r 362 LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 (416)
Q Consensus 362 ~~pI~G~dL~~-~Gi~pGp~iG~iL~~l~~~~i~~~~~n~~e~l~~~lk~l~~~ 414 (416)
.+.|||+|||+ +|++|||+||++|+++++++++|++.|++|++..++++...+
T Consensus 2 eLaI~G~dLm~~lg~~pGp~ig~il~~l~~~vl~g~i~N~~e~l~~~v~~~~~~ 55 (60)
T 1miw_A 2 ELAVNGKDVIEWVGKPAGPWVKEALDAIWRAVVNGEVENEKERIYAWLXERNRT 55 (60)
T ss_dssp GCSSCHHHHHHHHTCCSSHHHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHHHTH
T ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 998389999997499905899999999999996499999799999999972364
No 11
>>2fcl_A Hypothetical protein TM1012; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} (A:1-141)
Probab=94.66 E-value=0.22 Score=28.43 Aligned_cols=86 Identities=22% Similarity=0.202 Sum_probs=53.4
Q ss_pred CHHCCCHH----HHHHHHHHHHCCCEEEEEHHHHHHHHCC--CCCCEEEEEEEC-CHHHHHHHHHHCCCCEECC-CCCCC
Q ss_conf 52219988----9999999997898599970699888778--898608999808-9899999998769956213-43144
Q gi|254781115|r 7 HKWFHDSD----LINILSLLNKGEDKSCIVGGAVRDSLMN--LSVQDIDIATTI-LPDRVMRIFSKTRYKVIPT-SISYG 78 (416)
Q Consensus 7 ~~~~~~~~----~~~i~~~l~~~g~~~~~VGG~VRD~ll~--~~~~DiD~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~g 78 (416)
++.+..++ +..+.+.|++.|.+-.+|||+-. .+-| |.++||||.|.. +.+.+.+.|...++..... ....-
T Consensus 10 ~~~m~~~~~~~~l~~i~~~L~~~~i~y~ivGg~Al-~~~G~~R~t~DIDi~v~~~d~~~~~~~L~~~g~~~~~~~~~~~~ 88 (141)
T 2fcl_A 10 HHHMIRPEYLRVLRXIYDRLXNEXVNWVVTGSLSF-ALQGVPVEVHDIDIQTDEEGAYEIERIFSEFVSXXVRFSSTEXI 88 (141)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTSSCCEEEEHHHHH-HHTTCCCCCCSEEEEECHHHHHHHHHHTGGGEEEEEEEEECSSE
T ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHH-HHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 65218999999999999999865999897599999-98190989986589974760999999999852357777764335
Q ss_pred E---EEEEECCEEEEEEC
Q ss_conf 6---99998998886421
Q gi|254781115|r 79 T---IKIICRKKYFDITT 93 (416)
Q Consensus 79 t---~~~~~~~~~~di~~ 93 (416)
+ .....++..+|+-+
T Consensus 89 ~~~~~~~~~~g~~iDl~~ 106 (141)
T 2fcl_A 89 CSHFGELIIDGIXVEIMG 106 (141)
T ss_dssp EEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEECCEEEEEEC
T ss_conf 770799987998667514
No 12
>>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransferase superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} (A:15-141)
Probab=89.72 E-value=1.4 Score=23.08 Aligned_cols=83 Identities=8% Similarity=0.008 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEEC----CHHHHHHH----HHHCCCCEECCCCCCCEEEEEEC
Q ss_conf 89999999997898599970699888778898608999808----98999999----98769956213431446999989
Q gi|254781115|r 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI----LPDRVMRI----FSKTRYKVIPTSISYGTIKIICR 85 (416)
Q Consensus 14 ~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~gt~~~~~~ 85 (416)
....|...|.+...+++++|-+=|+-.+. +..|+|+.+-. .++..... +............++-+|++.++
T Consensus 13 ~~~~l~~~l~~~~~~~~~~GSyargT~i~-~~sDiDi~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~v~~~ 91 (127)
T 1r89_A 13 AEEELRRRLDELGVEYVFVGSYARNTWLK-GSLEIDVFLLFPEEFSKEELRERGLEIGKAVLDSYEIRYAEHPYVHGVVK 91 (127)
T ss_dssp HHHHHHHHHHHHTCCEEEEHHHHHTCCCT-TCCEEEEEEEECTTSCHHHHHHHHHHHHHHHSSSEEEEESSSEEEEEEET
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999986098299989686899899-97438999983899989999999999998545656632315658999983
Q ss_pred CEEEEEECC-CCC
Q ss_conf 988864213-446
Q gi|254781115|r 86 KKYFDITTL-RSD 97 (416)
Q Consensus 86 ~~~~di~~~-R~e 97 (416)
+..+||..+ +.+
T Consensus 92 ~~~vDiVPa~~~~ 104 (127)
T 1r89_A 92 GVEVDVVPCYKLK 104 (127)
T ss_dssp TEEEEEEEEECCS
T ss_pred CEEEEEEEEEEEC
T ss_conf 4688876566402
No 13
>>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} (A:243-344)
Probab=84.86 E-value=1.3 Score=23.27 Aligned_cols=71 Identities=8% Similarity=0.079 Sum_probs=50.3
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH--HCCC-CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 766652047768578998875303425677778888754--1143-33672466789987080245516989998640
Q gi|254781115|r 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC--NFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337 (416)
Q Consensus 263 ~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 337 (416)
.-.|++|++..+.+.+..+++.+|+||+.++.+...+.. +.+. ..++. ..+|..|.+.......+..+...
T Consensus 7 ~~aWa~l~~~l~~~~~~~FLk~WK~SN~~ik~V~~~~~~l~~~r~~~~~~~----~~LY~~G~~~~~~ae~v~~~~g~ 80 (102)
T 1miw_A 7 EERWALLCHALGVQESRPFLRAWKLPNKVVDEAGAILTALADIPRPEAWTN----EQLFSAGLERALSVETVRAAFTG 80 (102)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHTTCCHHHHHHHHHHHHHHHHCCSGGGCCH----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 789999986345245788998853689999999999999998764226679----99998788877659999999873
No 14
>>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site and active site being FAR from EACH other, structural genomics; HET: GDP; 2.00A {Aquifex aeolicus} (A:1-221)
Probab=53.88 E-value=13 Score=16.46 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=42.4
Q ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH-------HHCCCCCCHHHHHHHHCCCCCHHH
Q ss_conf 7886421101899999875300233468870105857898778677-------631788016766652047768578
Q gi|254781115|r 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE-------QVFEWKIDSLLRFIVLISWQDKKS 277 (416)
Q Consensus 208 El~KiL~~~~~~~~l~~L~~~gll~~ifpel~~~~~~~l~~~~~~~-------~~~~~~~~~~lrla~Ll~~~~~~~ 277 (416)
...+|+.++...+ |+...+.|....+||... ..++.+.+... ..........++.|+|+||.|-..
T Consensus 18 ~~~~ii~t~~fqR-Lr~i~Qlg~~~~v~p~a~---htRfeHSLGV~~la~~~~~~l~~~~~~~i~~AaLLHDiGH~P 90 (221)
T 2hek_A 18 AGLRLIDSFPFQR-LRYVKQLGLAYLVFPSAQ---HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPP 90 (221)
T ss_dssp HHHHHHTSHHHHG-GGGSBTTTTGGGTSTTCC---CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCS
T ss_pred HHHHHHCCHHHHC-CCCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
T ss_conf 9999819976715-456624785634279983---661109999999999999998543488999999986125411
No 15
>>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} (A:119-241)
Probab=47.29 E-value=17 Score=15.79 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=26.9
Q ss_pred CEEEEEHHHHHHHHCCCC-CCEEEEEEECCHHHHHHHHHHC
Q ss_conf 859997069988877889-8608999808989999999876
Q gi|254781115|r 27 DKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKT 66 (416)
Q Consensus 27 ~~~~~VGG~VRD~ll~~~-~~DiD~~~~~~~~~~~~~~~~~ 66 (416)
..+=++|++=| |++ +.|+||.+..++..+.+.|.+.
T Consensus 62 ~~~~~~GS~RR----g~e~vgDiDilit~~~~~v~~~l~~~ 98 (123)
T 2w9m_A 62 LSPAPAGDVRR----GLETVRAAELTVTGTPDDVLARLPEL 98 (123)
T ss_dssp GCCEECHHHHH----TCSEESSEEEEEESCHHHHHHHCTTC
T ss_pred CEEEECCCCCC----CCCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 66997574225----66332663368835779999999862
No 16
>>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} (A:1-126)
Probab=38.88 E-value=23 Score=14.94 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=21.8
Q ss_pred HHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 9978985999706998887788986089998089
Q gi|254781115|r 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTIL 55 (416)
Q Consensus 22 l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~ 55 (416)
+++.-..+|+.|.+.|.-. .+-.|||+++-.+
T Consensus 27 ~~~~i~~i~LfGS~aRG~~--~~~SDiDl~vi~~ 58 (126)
T 1kny_A 27 YGDDVKAIGVYGSLGRQTD--GPYSDIEMMCVMS 58 (126)
T ss_dssp HGGGEEEEEEEHHHHHTCC--CTTCCEEEEEEES
T ss_pred HCCCEEEEEEECCCCCCCC--CCCCCEEEEEEEC
T ss_conf 2735579999877658999--9999867999975
No 17
>>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} (A:1-190)
Probab=37.71 E-value=9.4 Score=17.50 Aligned_cols=69 Identities=6% Similarity=0.049 Sum_probs=39.5
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH--------------CCCCCCHHHHHHHHCCCCC
Q ss_conf 88642110189999987530023346887010585789877867763--------------1788016766652047768
Q gi|254781115|r 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV--------------FEWKIDSLLRFIVLISWQD 274 (416)
Q Consensus 209 l~KiL~~~~~~~~l~~L~~~gll~~ifpel~~~~~~~l~~~~~~~~~--------------~~~~~~~~lrla~Ll~~~~ 274 (416)
..+|+.++.... |+...+.|....++|...- .++.+.+..... .......+++.|+|+||.|
T Consensus 24 ~~~Ii~tp~fqR-Lr~i~Qlg~~~~v~p~a~h---tRfeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~v~~AaLLHDiG 99 (190)
T 2q14_A 24 LYDIVRHPLLQR-LTRIKQVGLSSVVYPGAQH---TRFQHSLGAFYLXSEAITQLTSKGNFIFDSEAEAVQAAILLHDIG 99 (190)
T ss_dssp HHHHHHSHHHHG-GGGSBTTTTTTTTCTTCCC---BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTTT
T ss_pred HHHHCCCHHHHC-CCCCCCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 998729976720-0686647877665899844---700099999999999999998618888878999999999987158
Q ss_pred HHHHHHH
Q ss_conf 5789988
Q gi|254781115|r 275 KKSILSM 281 (416)
Q Consensus 275 ~~~~~~~ 281 (416)
-..+-..
T Consensus 100 H~PFsH~ 106 (190)
T 2q14_A 100 HGPFSHV 106 (190)
T ss_dssp CCTTHHH
T ss_pred CCHHHHH
T ss_conf 6410122
No 18
>>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} (A:130-290)
Probab=37.13 E-value=24 Score=14.76 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=30.7
Q ss_pred HHHHHHH--CCCEEEEEHHHHHHHHCCCC-CCEEEEEEEC-CH-------HHHHHHHHHCCC
Q ss_conf 9999997--89859997069988877889-8608999808-98-------999999987699
Q gi|254781115|r 18 ILSLLNK--GEDKSCIVGGAVRDSLMNLS-VQDIDIATTI-LP-------DRVMRIFSKTRY 68 (416)
Q Consensus 18 i~~~l~~--~g~~~~~VGG~VRD~ll~~~-~~DiD~~~~~-~~-------~~~~~~~~~~~~ 68 (416)
|.+.+.. .+.++.++||+=| |++ ++|+||.+.. ++ ..+...|.+.++
T Consensus 37 i~~~l~~~~~~~~v~i~GSyRR----gke~~gDiDiLit~~d~~~~~~ll~~v~~~l~~~g~ 94 (161)
T 2ihm_A 37 IEAAVRQTLPGATVTLTGGFRR----GKLQGHDVDFLITHPEEGQEVGLLPKVMSCLQSQGL 94 (161)
T ss_dssp HHHHHHTTCTTCEEEECHHHHT----TCSEESEEEEEEECSSTTTTTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCCEEEEECCCCC----CCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9999982599747985135320----454323334303168740278899999987776052
No 19
>>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydrolase., PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A (A:1-73,A:184-264)
Probab=33.63 E-value=17 Score=15.74 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHCCCEEEEEHH----H---HHHHHC--CCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEE
Q ss_conf 98899999999978985999706----9---988877--88986089998089899999998769956213431446999
Q gi|254781115|r 12 DSDLINILSLLNKGEDKSCIVGG----A---VRDSLM--NLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82 (416)
Q Consensus 12 ~~~~~~i~~~l~~~g~~~~~VGG----~---VRD~ll--~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 82 (416)
-+++...++.|++.|.++++|-+ . |...|- |.+ ...|-++...|.-+..++.+.+... ..+.+
T Consensus 23 ~~~~~e~l~~l~~~G~~~~i~Tn~s~~~~~~~~~~l~~lgi~-~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~ 94 (154)
T 3epr_A 23 IPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVE-TPLETIYTANAIIMNKALEILNIPR-------NQAVM 94 (154)
T ss_dssp CHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCC-CCGGGEEEHSHHHHHHHHHHHTSCG-------GGEEE
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCC-CCHHHCCCHCHHHHHHHHHHHCCCC-------CCEEE
T ss_conf 825999999999879988999389999999999987531655-4312102352056665556532686-------60899
Q ss_pred EECCEEEEEECCCCCC-C----CCCCCCCCCCCHHHHHHCCCCCCCCCCEE
Q ss_conf 9899888642134466-7----68874322332013321044780030020
Q gi|254781115|r 83 ICRKKYFDITTLRSDL-I----TDGRYAKVVFTRDWKADSLRRDFTINALY 128 (416)
Q Consensus 83 ~~~~~~~di~~~R~e~-~----~~~~~~~~~~~~~~~eDl~RRDFTINAla 128 (416)
+.+....|+..++.-- . ..+... .....+-..+-||.+++|.
T Consensus 95 VgD~~~~Di~~A~~aG~~~v~v~~~~~~----~~~~~~~~~~pd~~i~~l~ 141 (154)
T 3epr_A 95 VGDNYLTDIMAGINNDIDTLLVTTGFTT----VEEVPDLPIQPSYVLASLD 141 (154)
T ss_dssp EESCTTTHHHHHHHHTCEEEEETTSSSC----GGGGGGCSSCCSEEESCGG
T ss_pred EECCCHHHHHHHHHCCCCEEEECCCCCC----HHHHHHCCCCCCEEECCHH
T ss_conf 9799579999999879989998999999----8899737999979988989
No 20
>>1yll_A PA5104, conserved hypothetical protein; structural genomics, beta- barrels, PSI, protein structure initiative; 1.64A {Pseudomonas aeruginosa PAO1} (A:1-12,A:118-200)
Probab=32.76 E-value=13 Score=16.46 Aligned_cols=15 Identities=47% Similarity=0.443 Sum_probs=9.4
Q ss_pred CCCEEEEE-EEEECCC
Q ss_conf 21003320-1220136
Q gi|254781115|r 164 YLRILRFF-RFFAHYG 178 (416)
Q Consensus 164 pLRiLRa~-RFasrlg 178 (416)
-||||||+ ||.|||.
T Consensus 5 ~~~~~~~~~RY~ARLQ 20 (95)
T 1yll_A 5 ELRILRAVRRHRARLQ 20 (95)
T ss_dssp EEEEECGGTTEEEEEE
T ss_pred EEEEECHHCCCEEEEE
T ss_conf 0599848996279999
No 21
>>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} (A:120-262)
Probab=31.82 E-value=29 Score=14.21 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=29.9
Q ss_pred HHHHHHHH--CCCEEEEEHHHHHHHHCCCC-CCEEEEEEEC-CH-----------HHHHHHHHHCCC
Q ss_conf 99999997--89859997069988877889-8608999808-98-----------999999987699
Q gi|254781115|r 17 NILSLLNK--GEDKSCIVGGAVRDSLMNLS-VQDIDIATTI-LP-----------DRVMRIFSKTRY 68 (416)
Q Consensus 17 ~i~~~l~~--~g~~~~~VGG~VRD~ll~~~-~~DiD~~~~~-~~-----------~~~~~~~~~~~~ 68 (416)
.|.+.+.. .+.++.++|++=| |++ +.|+||.+.. +| .++.+.|.+.++
T Consensus 42 ~i~~~l~~~~~~~~v~~~GS~RR----gket~gDiDili~~~~~~~~~~~~~~~l~~v~~~l~~~~~ 104 (143)
T 2fmp_A 42 IVLNEVKKVDSEYIATVCGSFRR----GAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHF 104 (143)
T ss_dssp HHHHHHHHHCTTCEEEECHHHHT----TCSEESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCCEEEEECCCCCC----CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999986498507970352222----4455677566885587542011026799999999864787
No 22
>>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, PSI-2, protein structure initiative; HET: DGT DTP; 2.40A {Enterococcus faecalis V583} PDB: 2o6i_A* (A:1-247)
Probab=28.20 E-value=33 Score=13.80 Aligned_cols=70 Identities=9% Similarity=0.015 Sum_probs=35.2
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH---------------------HCCCCCCHHHHHH
Q ss_conf 8864211018999998753002334688701058578987786776---------------------3178801676665
Q gi|254781115|r 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ---------------------VFEWKIDSLLRFI 267 (416)
Q Consensus 209 l~KiL~~~~~~~~l~~L~~~gll~~ifpel~~~~~~~l~~~~~~~~---------------------~~~~~~~~~lrla 267 (416)
..+|+.++.... |+-..+.|+...++|...- .++.+.+.... ........+++.|
T Consensus 55 ~~rIidt~~fqR-Lr~i~Qlg~~~lv~p~a~h---tRfeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~A 130 (247)
T 3irh_A 55 ILDLINSAEVQR-LRRIKQLGTSSFTFHGAEH---SRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCA 130 (247)
T ss_dssp HHHHHTSHHHHG-GGGSBSSTTGGGTSTTCCC---BHHHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHH
T ss_pred HHHHCCCHHHHH-HCCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 998629987732-2557547777664789814---722099999999999999998606521124456777899999999
Q ss_pred HHCCCCCHHHHHHHH
Q ss_conf 204776857899887
Q gi|254781115|r 268 VLISWQDKKSILSMA 282 (416)
Q Consensus 268 ~Ll~~~~~~~~~~~~ 282 (416)
+|+||.|-..+-...
T Consensus 131 aLlHDiGH~PFsH~~ 145 (247)
T 3irh_A 131 ALLHDVGHGPYSHTF 145 (247)
T ss_dssp HHHTTTTCCTTHHHH
T ss_pred HHHHCCCCCCCCCHH
T ss_conf 998524766024403
No 23
>>1q5x_A Regulator of RNAse E activity A; 3-layer sandwich, alpha-beta structure, parallel beta sheet, antiparallel beta sheet, hydrolase inhibitor; 2.00A {Escherichia coli} (A:)
Probab=27.77 E-value=14 Score=16.26 Aligned_cols=15 Identities=20% Similarity=0.178 Sum_probs=6.8
Q ss_pred HHHHHHHCCCCCCEE
Q ss_conf 699888778898608
Q gi|254781115|r 34 GAVRDSLMNLSVQDI 48 (416)
Q Consensus 34 G~VRD~ll~~~~~Di 48 (416)
..+++++-.-++.|+
T Consensus 46 ~~~~~~i~~~~~G~V 60 (161)
T 1q5x_A 46 GLLYDLLEQNGRGRV 60 (161)
T ss_dssp HHHHHHHTSCCTTEE
T ss_pred HHHHHHHHCCCCCEE
T ss_conf 999999972598819
No 24
>>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase; beta, beta alpha domain, 2-dimethylmenaquinone methyltransferase; 1.90A {Geobacillus kaustophilus HTA426} (A:)
Probab=27.63 E-value=15 Score=16.15 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=13.5
Q ss_pred HHHHHHHCCCEEEEEHHHHHHH
Q ss_conf 9999997898599970699888
Q gi|254781115|r 18 ILSLLNKGEDKSCIVGGAVRDS 39 (416)
Q Consensus 18 i~~~l~~~g~~~~~VGG~VRD~ 39 (416)
+....+..|....+|.|+|||.
T Consensus 76 ~~~~a~~~G~~GvVvdG~vRD~ 97 (161)
T 2pcn_A 76 LAQIACERGLAGVIIHGCIRDS 97 (161)
T ss_dssp HHHHHHHTTCCEEEEEEEESCH
T ss_pred HHHHHHHCCCCEEEECCCCCCH
T ss_conf 9999998597689644734899
No 25
>>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} (A:155-311)
Probab=27.03 E-value=35 Score=13.67 Aligned_cols=27 Identities=22% Similarity=0.227 Sum_probs=21.5
Q ss_pred CCCEEEEEHHHHHHHHCCCC-CCEEEEEEECC
Q ss_conf 89859997069988877889-86089998089
Q gi|254781115|r 25 GEDKSCIVGGAVRDSLMNLS-VQDIDIATTIL 55 (416)
Q Consensus 25 ~g~~~~~VGG~VRD~ll~~~-~~DiD~~~~~~ 55 (416)
.++++-++||+=| |++ +.||||.+..+
T Consensus 41 p~~~v~i~GsyRR----Gk~~~gDvDiLit~p 68 (157)
T 1jms_A 41 PDALVTMTGGFRR----GKMTGHDVDFLITSP 68 (157)
T ss_dssp TTCEEEECHHHHT----TCSCBSSEEEEEECT
T ss_pred CCCEEEEECCCCC----CCCCCCCEEEEEECC
T ss_conf 9748997143114----776567624898348
No 26
>>1nln_A Adenain; thiol hydrolase, viral proteinase, peptide cofactor; 1.60A {Human adenovirus 2} (A:)
Probab=25.48 E-value=31 Score=14.07 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=14.3
Q ss_pred CEEECCCCH---HHHHCC-CHHHHH
Q ss_conf 020003210---132000-068887
Q gi|254781115|r 126 ALYADQQGK---VIDYVG-GLNDLR 146 (416)
Q Consensus 126 Ala~~~~~~---l~Dp~g-G~~DL~ 146 (416)
|||+++... ++|||| --+.|+
T Consensus 57 A~Aw~P~s~t~YlFDPfGfsd~~L~ 81 (204)
T 1nln_A 57 AFAWNPRSKTCYLFEPFGFSDQRLK 81 (204)
T ss_dssp EEEEETTTTEEEEECTTCCCHHHHH
T ss_pred EEEECCCCCEEEEECCCCCCHHHHH
T ss_conf 7576587675888779888789999
No 27
>>1vi4_A Regulator of ribonuclease acivity A protein 1; structural genomics, unknown function; 1.87A {Vibrio cholerae} (A:)
Probab=24.81 E-value=18 Score=15.68 Aligned_cols=21 Identities=38% Similarity=0.376 Sum_probs=10.7
Q ss_pred HHHHHHCCCEEEEEHHHHHHH
Q ss_conf 999997898599970699888
Q gi|254781115|r 19 LSLLNKGEDKSCIVGGAVRDS 39 (416)
Q Consensus 19 ~~~l~~~g~~~~~VGG~VRD~ 39 (416)
...++..|....+|-|+|||.
T Consensus 82 ~~~a~~~G~~GvVvdG~vRD~ 102 (174)
T 1vi4_A 82 AILAIKNDWEGVIIYGAVRDV 102 (174)
T ss_dssp HHHHHHTTCCEEEEEEEECCH
T ss_pred HHHHHHCCCCEEECCCCCCCH
T ss_conf 999987170489545425899
No 28
>>3fpn_A Geobacillus stearothermophilus UVRA interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus} (A:)
Probab=22.54 E-value=42 Score=13.12 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCCEEEEEHHHHHHH--H--CC-CCCCEEEEEEE
Q ss_conf 9999999997898599970699888--7--78-89860899980
Q gi|254781115|r 15 LINILSLLNKGEDKSCIVGGAVRDS--L--MN-LSVQDIDIATT 53 (416)
Q Consensus 15 ~~~i~~~l~~~g~~~~~VGG~VRD~--l--l~-~~~~DiD~~~~ 53 (416)
...+++.+.+.||.=-.|.|-|.+. . |. .+.+|||++|+
T Consensus 36 ~~~~~~~l~~~Gf~rv~vdg~i~~l~~~~~l~~~~~h~I~vVVD 79 (119)
T 3fpn_A 36 HAKTLEDIRKQGYVRVRIDREMRELTGDIELEKNKKHSIDVVVD 79 (119)
T ss_dssp CHHHHHHHHHTTCCEEEETTEEEETTSCCCCCTTSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCEEEEEE
T ss_conf 99999998860622078999985415663201244641355554
No 29
>>1ev7_A Type IIE restriction endonuclease NAEI; APO-NAEI, topoisomerase, helix- turn-helix, CAP, hydrolase; 2.38A {Lechevalieria aerocolonigenes} (A:1-170)
Probab=22.10 E-value=28 Score=14.36 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=30.4
Q ss_pred CCCCCCCHHCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHH
Q ss_conf 9776575221998899999999978985999706998887
Q gi|254781115|r 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSL 40 (416)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~~l~~~g~~~~~VGG~VRD~l 40 (416)
|+.++.+--..++++..+.+.+...+--.-..||++||.+
T Consensus 1 ~~~~~l~~a~~D~eL~~va~~~~~adpdg~r~a~alR~si 40 (170)
T 1ev7_A 1 MTELPLQFAEPDDDLERVRATLYSLDPDGDRTAGVLRDTL 40 (170)
T ss_dssp ---------CTTHHHHHHHHHHHHHSSSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 9756645578885899999998608970779999999999
No 30
>>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* (A:248-381)
Probab=21.98 E-value=43 Score=13.04 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=54.4
Q ss_pred HHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 63178801676665204776857899887530342567777888875411433-----3672466789987080245516
Q gi|254781115|r 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYLYGDKVMIAK 328 (416)
Q Consensus 254 ~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 328 (416)
..++.....-.-+..++...+.+....+.+|+.+|++.+..+...-+...... ..--+.+.+.......+
T Consensus 25 ~~~~k~n~Fyavl~vfLEyydeeslk~i~~RYGlpK~fi~elk~~ek~~~~l~~mi~~~~~fS~iY~~~~~~s~E----- 99 (134)
T 3h38_A 25 ENFGEVDRFYAVLHVFLEFYDDESWKEVRDRYSLRRNLINEIRHVEKSAPALLEMLSERVPASFVYPLVKGVSNE----- 99 (134)
T ss_dssp HHHCCCCHHHHHHHHHTTTCCHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHTTCCGGGTHHHHTTCCHH-----
T ss_pred HHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHH-----
T ss_conf 302215689999876303576355788888863579999999999998899999976222389999998734789-----
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 9899986407776013899999998775128888898878
Q gi|254781115|r 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 (416)
Q Consensus 329 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~pI~G~ 368 (416)
.......+ ........+.++++.+...+.++ |||+
T Consensus 100 -~~~hi~ay--ld~e~~~~~~eyL~kv~~tKL~K--v~G~ 134 (134)
T 3h38_A 100 -TICHFLAY--LSGEKEGLFKSYLLKIKNTKLEK--INGE 134 (134)
T ss_dssp -HHHHHHTT--CCHHHHHHHHHHHHHHHSSCSCS--SCCH
T ss_pred -HHHHHHHH--CCCCHHHHHHHHHHHHHCCCCCC--CCHH
T ss_conf -99999986--47043899999998860689999--4999
No 31
>>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, mechanism, structure, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} (A:40-102,A:182-267)
Probab=20.98 E-value=45 Score=12.97 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=15.8
Q ss_pred HCCCCCHHHHHHHHHHHHCCC
Q ss_conf 102220577688788642110
Q gi|254781115|r 196 GLKILSSERIWSEINKLLEAK 216 (416)
Q Consensus 196 ~L~~iS~ERI~~El~KiL~~~ 216 (416)
....=|-||||+||..=|...
T Consensus 112 ~v~~WsDeriW~EL~~Rl~~~ 132 (149)
T 1k0i_A 112 KVEDWSDERFWTELKARLPSE 132 (149)
T ss_dssp CGGGCCHHHHHHHHHHTSCHH
T ss_pred CHHHCCHHHHHHHHHHHCCHH
T ss_conf 201035377899998751313
Done!