HHSEARCH alignment of GI: 254781115 and SCOP domain: d1miwa2

Alignment
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00  E-value=3.6e-38  Score=271.94  Aligned_cols=131  Identities=38%  Similarity=0.624  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCEEEEEEC
Q ss_conf             89999999997898599970699888778898608999808989999999876995621343144699998998886421
Q gi|254781115|r   14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITT   93 (416)
Q Consensus        14 ~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~di~~   93 (416)
                      ++..|++.++++|+++|+|||||||+|||++++|+||+|++.|+++++.+.    +...++..|||+++..++..+++++
T Consensus         7 ~~l~i~~~l~~~g~~~ylVGG~VRD~LLg~~~~DiDi~v~~~~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~   82 (139)
T d1miwa2           7 EALGIIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFP----KTIDVGSKHGTVVVVHKGKAYEVTT   82 (139)
T ss_dssp             HHHHHHHHHHHTTCCEEEESHHHHHHHHTCCCCCCEEEESSCHHHHHHHCS----SEEEEEGGGTEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCCEEEECCCHHHHHHHCC----CCCCCCCEEEEEEEEEECCEEEEEE
T ss_conf             999999999988997999838999998399999842872377588765412----1112674025899887052015789


Q ss_pred             CCCCC-CCCCCCC-CCCCCHHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHHHHH
Q ss_conf             34466-7688743-2233201332104478003002000321013200006888787
Q gi|254781115|r   94 LRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR  148 (416)
Q Consensus        94 ~R~e~-~~~~~~~-~~~~~~~~~eDl~RRDFTINAla~~~~~~l~Dp~gG~~DL~~~  148 (416)
                      +|+|. |.++++| .+.+..+|++||.|||||||||||+.+|+|+|||||++||++|
T Consensus        83 ~r~~~~~~~~~~~~~~~~~~~i~eDl~RRDFTINAma~~~~g~liDp~~G~~DL~~k  139 (139)
T d1miwa2          83 FKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAIAMDEYGTIIDPFGGREAIRRR  139 (139)
T ss_dssp             CEECC---------CCEECSCHHHHHHTSSBSGGGCEECTTCCEECTTCHHHHHHHT
T ss_pred             EEECCCCCCCCCCCEEEECCCHHHHHHCCCCCEEEEEECCCCCEEECCCCHHHHHCC
T ss_conf             860364211120222554575454664578516567897999888589999999649


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: tRNA CCA-adding enzyme, head domain
species: Bacillus stearothermophilus [TaxId: 1422]