HHSEARCH alignment of GI: 254781115 and SCOP domain: d1ou5a1

Alignment
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=99.96  E-value=8e-30  Score=216.08  Aligned_cols=149  Identities=28%  Similarity=0.448  Sum_probs=126.3

Q ss_pred             HHHHCCCCCCHHHCCCCCEEEEEEEEECCC--CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             776427643100104210033201220136--433111100012333321022205776887886421101899999875
Q gi|254781115|r  149 TIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY  226 (416)
Q Consensus       149 ~ir~v~~~~~rf~EDpLRiLRa~RFasrlg--~f~id~~t~~ai~~~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~  226 (416)
                      .||+||||.+||.|||||||||+||+++||  .|.+|++|+.+|+++++.|..||+||||.|+.|||.+++|..++..|.
T Consensus         1 kvr~VGdp~~Rf~ED~LRILR~~RF~~~~~~~~f~id~~t~~ai~~~~~~L~~lS~ERI~~El~Kil~~~~~~~~l~~m~   80 (204)
T d1ou5a1           1 KVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIY   80 (204)
T ss_dssp             CCCBSSTTTTTSSSCTTHHHHHHHHHHHSCSSSSCCCHHHHHHHHHSCTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHH
T ss_pred             CEEEECCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             95476789985040289999999999997778898388999889987887156818778999999985137999999998


Q ss_pred             HCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             3002334688701058578987786776317880167666520477685789988753034256777788887541
Q gi|254781115|r  227 NGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN  302 (416)
Q Consensus       227 ~~gll~~ifpel~~~~~~~l~~~~~~~~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~~  302 (416)
                      ++|++++|+|... .+...+....+..  ....+++++++++|++..+  .+..++.++++||++++.+..+.+..
T Consensus        81 ~~gil~~i~~~~~-~~l~~~~~~~~~~--~~~~~~~~~~La~L~~~~~--~~~~~~~rlklSn~e~~~~~fl~~~r  151 (204)
T d1ou5a1          81 DLDVAPYIGLPAN-ASLEEFDKVSKNV--DGFSPKPVTLLASLFKVQD--DVTKLDLRLKIAKEEKNLGLFIVKNR  151 (204)
T ss_dssp             HTTCGGGGTCCCC-SCCHHHHHHHHHH--TTSCCCHHHHHGGGCCSTT--TTHHHHHHHCCCTTHHHHHHHHTTTT
T ss_pred             HCCHHHHHCCHHH-HHHHHHHHHHHHH--HCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             8885988585667-4299999999987--3489778999999859806--79999999689999999999999829


SCOP domain information

class: All alpha proteins
fold: Poly A polymerase C-terminal region-like
superfamily: Poly A polymerase C-terminal region-like
family: Poly A polymerase C-terminal region-like
domain: tRNA CCA-adding enzyme, C-terminal domains
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]