HHSEARCH alignment of GI: 254781115 and SCOP domain: d1vfga1

Alignment

Probab=99.94  E-value=7.6e-28  Score=202.86  Aligned_cols=150  Identities=21%  Similarity=0.123  Sum_probs=121.7

Q ss_pred             HHHHCCCCCCHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHH--HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             77642764310010421003320122013643311110001233--3321022205776887886421101899999875
Q gi|254781115|r  149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK--AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY  226 (416)
Q Consensus       149 ~ir~v~~~~~rf~EDpLRiLRa~RFasrlg~f~id~~t~~ai~~--~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~  226 (416)
                      +||++|+  +||.|||||||||+||+|+|| |.||++|..+|++  +++.+.++|+||||+|+.||+.+++|..++..|.
T Consensus         1 vlR~l~~--~sF~EDPlRiLRa~RF~ar~g-f~i~~~T~~~i~~~~~~~~l~~ls~eRI~~E~~kil~~~~~~~~l~~l~   77 (215)
T d1vfga1           1 VIRVLHP--VSFIEDPVRILRALRFAGRLN-FKLSRSTEKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYR   77 (215)
T ss_dssp             EECBSST--THHHHCTTHHHHHHHHHHHHT-CEECHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred             CEEECCC--CCCCCCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             9313898--875561999999999999968-9988999999999887656578978899999999982506899999999


Q ss_pred             HCCCCCCCCCCCCCCCHH-----HHHHHHHH---HHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             300233468870105857-----89877867---7631788016766652047768578998875303425677778888
Q gi|254781115|r  227 NGGIFKEIFLDVQEISLD-----QLSQVIEA---EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF  298 (416)
Q Consensus       227 ~~gll~~ifpel~~~~~~-----~l~~~~~~---~~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~  298 (416)
                      ++|+++.+||++......     ........   .........+++++++++|+.+++....+++++++|++..+.+...
T Consensus        78 ~~~ll~~l~p~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~  157 (215)
T d1vfga1          78 KYRVLEEIIEGFQWNEKVLQKLYALRKVVDWHALEFSEERIDYGWLYLLILISNLDYERGKHFLEEMSAPSWVRETYKFM  157 (215)
T ss_dssp             HTTCHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHCSCCSSTTHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             82819997832010265788899999998899986043221239999999986058299998988459899999999999


Q ss_pred             HHH
Q ss_conf             754
Q gi|254781115|r  299 FNC  301 (416)
Q Consensus       299 ~~~  301 (416)
                      ...
T Consensus       158 ~~~  160 (215)
T d1vfga1         158 KFK  160 (215)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999

SCOP domain information

class: All alpha proteins
fold: Poly A polymerase C-terminal region-like
superfamily: Poly A polymerase C-terminal region-like
family: Poly A polymerase C-terminal region-like
domain: Poly A polymerase PcnB
species: Aquifex aeolicus [TaxId: 63363]