BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein
[Candidatus Liberibacter asiaticus str. psy62]
(416 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040792|gb|ACT57588.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 416
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 416/416 (100%), Positives = 416/416 (100%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM
Sbjct: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR
Sbjct: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK
Sbjct: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE
Sbjct: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN
Sbjct: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK
Sbjct: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ
Sbjct: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
>gi|315122580|ref|YP_004063069.1| poly(A) polymerase protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495982|gb|ADR52581.1| poly(A) polymerase protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 421
Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 305/413 (73%), Positives = 362/413 (87%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
MVSI QHKWF D DLI+ILSLLN+G+DKSCIVGGAVR+SLMNLSVQDIDIATTILP+ +M
Sbjct: 1 MVSIAQHKWFCDPDLIHILSLLNQGKDKSCIVGGAVRNSLMNLSVQDIDIATTILPEVIM 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+IFS+T YKVIPT ISYGT+ II KK FDITTLRSDLITDGR+AKVVFT DWKADSLRR
Sbjct: 61 KIFSQTSYKVIPTGISYGTVTIIKNKKSFDITTLRSDLITDGRHAKVVFTHDWKADSLRR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
DFTINALYADQ G+VIDYVGGLNDL+NRTIKFIG+AHHRILEDYLRILRFFRFFAHYG+
Sbjct: 121 DFTINALYADQAGRVIDYVGGLNDLKNRTIKFIGNAHHRILEDYLRILRFFRFFAHYGQH 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+ID DGL ASI+AK GLKILSSERIW EI K+LEAKNPL+AI++M+NGGIFKEIFL+VQ+
Sbjct: 181 DIDPDGLAASIQAKAGLKILSSERIWLEIKKILEAKNPLHAIMYMHNGGIFKEIFLNVQD 240
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
S+DQLSQVIE E+VF W+ID LLRFIVLI ++K+SI+S+AKK SLPREI+YFL++
Sbjct: 241 SSIDQLSQVIEGEKVFGWEIDPLLRFIVLIPLREKQSIISIAKKLSLPREIKYFLLACIG 300
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
N ++ +SI E+K+ FYLYG ++++ KLKIFL+L+Y NL ++ C I Q++ DI HW K
Sbjct: 301 FNIEREKISIQEMKRFFYLYGREIVVIKLKIFLSLNYKNLDREEICHIRQIILDIEHWIK 360
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
PLFPL GDDV+KYGIPPGKK+GNIL +C++EWI SSF+LS EDL HLL+K+I
Sbjct: 361 PLFPLRGDDVLKYGIPPGKKIGNILSYCEKEWIKSSFKLSYEDLLHLLQKVIK 413
>gi|222086618|ref|YP_002545152.1| poly(A) polymerase protein [Agrobacterium radiobacter K84]
gi|221724066|gb|ACM27222.1| poly(A) polymerase protein [Agrobacterium radiobacter K84]
Length = 418
Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats.
Identities = 172/419 (41%), Positives = 247/419 (58%), Gaps = 6/419 (1%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M S+ WF D L +LSLLN D+ +VGGAVR+SL+ L V DIDIATT+LP+ V+
Sbjct: 1 MTSVAGQTWFKDEALQRVLSLLNAEGDEGRVVGGAVRNSLLGLPVADIDIATTLLPEAVI 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ K +PT I++GT+ ++ K F+ITTLR D+ TDGR A+V F+ DW+AD+ RR
Sbjct: 61 ERATTAGIKAVPTGIAHGTVTLVIDGKPFEITTLRRDVETDGRRAQVAFSNDWQADAERR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
D TINALYA G+VID VGGL DL R I+FIGDA RI ED+LRILRFFRFFA+YG
Sbjct: 121 DLTINALYASDNGEVIDMVGGLADLERRNIRFIGDAATRIAEDHLRILRFFRFFAYYGSG 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
D+DGL A A+ + LS+ER+WSE+ KLL AK+P A++ M GI E+ + ++
Sbjct: 181 RPDADGLRACAAARSKIASLSAERVWSEMKKLLAAKDPGRALLWMRQVGILTEVLPETEK 240
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+D + +I EQ W D LLR ++ D + +A++ L + +L + N
Sbjct: 241 WGIDAIPALIATEQALGWTSDPLLRLAAIVP-PDAARLAKLAERLRLSKAEAAYLQGWAN 299
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355
+ +S +L Y Y + A+LK+ LA+ T + ++L
Sbjct: 300 APGIKDDMSEVVFDRLLYRYDTPGVAARLKLALAVARGKAEGDFEEMARTARLGKLLERT 359
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
WKKP FP++G D + G+ G +VG IL +Q+W++ +F + + L L++LI S
Sbjct: 360 AGWKKPAFPVSGADALAAGVSAGPRVGEILGKLEQQWLDGNFAMDRAALLARLKELIES 418
>gi|121601737|ref|YP_989284.1| tRNA-nucleotidyltransferase [Bartonella bacilliformis KC583]
gi|120613914|gb|ABM44515.1| tRNA-nucleotidyltransferase [Bartonella bacilliformis KC583]
Length = 417
Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats.
Identities = 158/414 (38%), Positives = 239/414 (57%), Gaps = 9/414 (2%)
Query: 1 MVSIV---QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M +I Q W ++ +L +L+ G++++ +VGGAVR+ L+ + DIDIATT LP
Sbjct: 1 MNTIPNFKQADWLQHKNIQTLLRILSLGDEEARVVGGAVRNQLLGQPISDIDIATTCLPQ 60
Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
+V++ + +K +PT I +GT+ ++ +++TTLRSD+ TDGRYAKV F RDWK D+
Sbjct: 61 QVIKRVEEAGFKAVPTGIDFGTVTVVSESCSYEVTTLRSDVETDGRYAKVAFGRDWKKDA 120
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTINALY D G++ D VGGL+D+ +RTI+FIG A RI EDYLRILRFFRFFA Y
Sbjct: 121 ERRDFTINALYCDATGQLYDLVGGLSDIASRTIRFIGVAEQRICEDYLRILRFFRFFAWY 180
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G D+ GL A + K GL LSSER+W EI KLL A +P A++ M GI IF +
Sbjct: 181 GAGRPDAQGLKACVALKHGLHKLSSERVWEEIKKLLAASDPTRALLWMRQSGILTLIFPE 240
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
++ +D + +++ E V WK D LLR L+ D + + +A++ + + L
Sbjct: 241 TEKWGIDAIHSLVKTEHVLGWKEDPLLRLQSLLP-PDSERLQDIARRLRFSNKEKTRLRE 299
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN-----NLTHQDTCFILQVL 352
+ + S ++KL Y +G + ++ L + LA N Q +++
Sbjct: 300 WAELESISQNCSETCLQKLIYFHGRQPILDHLSLSLAAVCAGPVEGNENSQKIEHYMRLY 359
Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
W+ P+FP++G D+++ G GK VG L + W+ S F + + +L
Sbjct: 360 QLAQRWEIPVFPVSGKDLIERGFAKGKIVGQKLKELETIWVESGFLIDRNELLE 413
>gi|110634525|ref|YP_674733.1| polynucleotide adenylyltransferase region [Mesorhizobium sp. BNC1]
gi|110285509|gb|ABG63568.1| Polynucleotide adenylyltransferase region [Chelativorans sp. BNC1]
Length = 409
Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats.
Identities = 165/410 (40%), Positives = 244/410 (59%), Gaps = 6/410 (1%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M +I W L +L +LN+G +++ I GGAVR++L+ +V DIDIATT LPD +
Sbjct: 1 MTTIAGAPWLDQQGLQPLLEILNEGGEEARIAGGAVRNALLGEAVTDIDIATTNLPDETI 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
R +KV+PT +GTI +I + +++TTLR+D+ T GR+A+VVF RDWKAD+ RR
Sbjct: 61 RRAKAAGFKVVPTGYEHGTITVIAKGTPYEVTTLRADVETFGRHARVVFGRDWKADAERR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
DFTINALYA+ G+V+D VGGL DL++RT++FIG+ RI EDYLRILRFFRFFA YG
Sbjct: 121 DFTINALYAEPGGRVVDLVGGLADLQSRTLRFIGEPEKRIREDYLRILRFFRFFAWYGSG 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
D++GL A + K L LS ERIW E+ KLL A +P A++ M G+ ++ + ++
Sbjct: 181 RPDAEGLKACARLKDRLSGLSVERIWMELKKLLAAPDPSRALLWMRQTGVLTQVLPETEK 240
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+D + ++E E+ W ++ LLR + I D + I +A + L + L+S+
Sbjct: 241 WGIDAIHSLVETERALGWPVEPLLR-LASIVPPDPERIEKLAARLRLSKAEGAALVSWAE 299
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDI 355
+ +L E KL Y M +L++ LA D I ++L
Sbjct: 300 SSQPDPSLKEGEFLKLLYRSEAGGMAWRLRLGLASARARAVESDKALIEAAGYQRLLDIT 359
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
W+KP+FP+ G D+++ G PGK++G L +++WI S F LS+EDL
Sbjct: 360 ARWEKPVFPVRGRDLLERGFKPGKELGAKLAELEEKWIASGFSLSREDLL 409
>gi|222149362|ref|YP_002550319.1| poly(A) polymerase [Agrobacterium vitis S4]
gi|221736346|gb|ACM37309.1| poly(A) polymerase [Agrobacterium vitis S4]
Length = 420
Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats.
Identities = 156/420 (37%), Positives = 240/420 (57%), Gaps = 6/420 (1%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M ++ WF D+ L + +LLN + +VGGAVR+SL+ V DID+ATT++P V
Sbjct: 1 MTTVADQPWFQDAALAKVFALLNADGGEVRVVGGAVRNSLLGEPVGDIDLATTLVPSEVT 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
K +PT I +GT+ ++ K F++TTLR D+ T+GR+A+V F DW+ D+ RR
Sbjct: 61 ARAEAAGIKAVPTGIEHGTVTLVIGGKPFEVTTLRRDVETNGRHAEVAFGTDWQVDAERR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
DFTINALYA G+VID VGGL DL T++FIGDA RI EDYLR+LRFFRFFA YG
Sbjct: 121 DFTINALYATASGEVIDPVGGLADLETGTLRFIGDARLRIAEDYLRVLRFFRFFAWYGRG 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
D+DGL A A+ L LS+ER+WSE KLL AK+P A++ M G+ I + ++
Sbjct: 181 RPDADGLRACAAARDELHRLSAERVWSETKKLLSAKDPGRALLWMRQSGVLTAILPETEK 240
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+D + +I E W+ + LLR + ++ D + + +A++ L R FL F
Sbjct: 241 WGIDAIPGLIATETALNWQREPLLRLVAMVPN-DPERMKGLAERLKLSRAEAEFLQRFAT 299
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN-----LTHQDTCFILQVLSDI 355
+ ++ + +L Y + ++A+LK+ LA + + ++L
Sbjct: 300 APKIKDDMADLALDRLLYRHDKPGIVAQLKLSLASARAKAEGDTASMAASARWFRLLQRA 359
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
++KP+FP+TG D + G+ PG ++G +L + W+ ++F S+E L L++ + S
Sbjct: 360 QAFEKPVFPITGSDAIAAGLAPGPEIGRVLSTLEDSWVQANFTFSREKLLSRLKEAVTPS 419
>gi|227822872|ref|YP_002826844.1| polyA polymerase family protein [Sinorhizobium fredii NGR234]
gi|227341873|gb|ACP26091.1| polyA polymerase family protein [Sinorhizobium fredii NGR234]
Length = 419
Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats.
Identities = 162/414 (39%), Positives = 242/414 (58%), Gaps = 6/414 (1%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M SI WF L + LLN + +VGGAVR+SL+ L D+D+ATT P+ V+
Sbjct: 1 MTSIAAEPWFQAPSLGRVFELLNADGGEVRVVGGAVRNSLLGLPAGDVDLATTWRPEDVV 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
KV+PT I +GT+ ++ +++TTLR D+ TDGR A+V F DWKAD+ RR
Sbjct: 61 ERAKSAGIKVVPTGIDHGTVTLVIGGIPYEVTTLRRDVATDGRRAEVAFGTDWKADAGRR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
DFTINALYAD G++ DYVGGL D+ +RT++FIG A R+ EDYLRILR+FRFFAHYG
Sbjct: 121 DFTINALYADANGEIFDYVGGLPDIESRTLRFIGSAAERVAEDYLRILRYFRFFAHYGSG 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
D++GL A +A+ L LS+ER+W E+ KLL A++P A++ M G+ E+ + ++
Sbjct: 181 RPDAEGLRACAQARAKLATLSAERVWGEMKKLLAAEDPGRALLWMRQAGVLGEVLPETEK 240
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+D + +I AE++F W + LLR ++ D + + MA + L + FL+ F
Sbjct: 241 WGIDAIPGLIAAEKIFFWVPEPLLRLAAIVP-PDAERLERMAARLRLSKAEAAFLVRFAE 299
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355
TL+ + + Y G + ++A+LK+ LA +T ++LS
Sbjct: 300 APAIAATLADAALDRELYRKGAEGIVARLKLSLASARRKSETDPAYLAETAAFQRLLSRA 359
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
W++P+FPL+G DV+K G+P G KVG +L + WI+ +F + + L L
Sbjct: 360 ERWQRPVFPLSGADVLKAGVPAGPKVGELLTELENFWIDRNFSIDRATLVARLE 413
>gi|116253238|ref|YP_769076.1| poly(A) polymerase [Rhizobium leguminosarum bv. viciae 3841]
gi|115257886|emb|CAK08984.1| putative poly(A) polymerase [Rhizobium leguminosarum bv. viciae
3841]
Length = 417
Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats.
Identities = 163/415 (39%), Positives = 235/415 (56%), Gaps = 6/415 (1%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M I WF D L IL+LL+ + +VGGAVR+SLM L V DIDIATT+ P+ VM
Sbjct: 1 MTGIADQAWFRDPALGRILALLSADGGEGRVVGGAVRNSLMGLPVNDIDIATTLRPETVM 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
K +PT + +GT+ ++ K F++TTLR+D+ TDGR AKV F+ DWKAD+ RR
Sbjct: 61 ERAEAAGIKAVPTGLDHGTVTLVIDGKPFEVTTLRTDVETDGRRAKVAFSTDWKADAERR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
D TINALYAD G+V+D VGGL D+ R I+FIGDA RI ED+LRILRFFRFFA+YG
Sbjct: 121 DLTINALYADAGGEVVDLVGGLADIERRNIRFIGDAAMRIAEDHLRILRFFRFFAYYGSG 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
D++GL A A+ L LS+ER+WSE+ KLL A +P A++ M + EI + +
Sbjct: 181 RPDAEGLKACSAARSKLTSLSAERVWSELRKLLGAADPGRALLWMRQVAVLTEILPETER 240
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+D + +I E+ W D LLR ++ D + ++A + L L ++
Sbjct: 241 WGIDAIPSLITTEKALGWSPDPLLRLAAIVP-PDVARLEALAARLKLSNAEAATLKAWAM 299
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355
+S ++L Y G + +LK+ LA+ + ++++L
Sbjct: 300 AAPVNDDMSSAAFERLLYRNGAGGITTRLKLALAVARGKAESDFDEMARSARLIKLLDRA 359
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+HWKKP FPL G DV+ GI G +VG +L + +W+ +F + L L++
Sbjct: 360 MHWKKPQFPLNGGDVISAGIASGPRVGELLAGLENQWVEENFVSDRAALLARLQE 414
>gi|15966115|ref|NP_386468.1| hypothetical protein SMc02700 [Sinorhizobium meliloti 1021]
gi|307305670|ref|ZP_07585417.1| Polynucleotide adenylyltransferase region [Sinorhizobium meliloti
BL225C]
gi|307317673|ref|ZP_07597112.1| Polynucleotide adenylyltransferase region [Sinorhizobium meliloti
AK83]
gi|15075385|emb|CAC46941.1| tRNA-nucleotidyltransferase/poly(A) polymerase [Sinorhizobium
meliloti 1021]
gi|306896831|gb|EFN27578.1| Polynucleotide adenylyltransferase region [Sinorhizobium meliloti
AK83]
gi|306902373|gb|EFN32969.1| Polynucleotide adenylyltransferase region [Sinorhizobium meliloti
BL225C]
Length = 419
Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats.
Identities = 163/419 (38%), Positives = 241/419 (57%), Gaps = 6/419 (1%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M SIV +WF L I LLN + +VGGA+R+SLM L D+D+ATT P+ V
Sbjct: 1 MTSIVAERWFQAPHLRRIFDLLNADGGEVRVVGGAIRNSLMGLPAGDVDLATTWRPEEVT 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
K +PT I +GT+ ++ ++ITTLR D+ TDGR A+V F DWKAD+ RR
Sbjct: 61 ERAGGAGIKAVPTGIDHGTVTLVIEGVPYEITTLRRDVATDGRRAEVAFGTDWKADAERR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
DFTINALYA G++ID+VGGL D+ RT++FIG A R+ EDYLRILRFFRFFAHYG
Sbjct: 121 DFTINALYAGVDGEIIDHVGGLGDIETRTVRFIGSAAERVAEDYLRILRFFRFFAHYGSG 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
D++GL A +A+ L LS+ER+W+E KLL A +P A++ M G+ EI + ++
Sbjct: 181 RPDAEGLRACAQARAKLATLSAERVWTETKKLLSADDPGRALLWMRQAGVLSEILPETEK 240
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+D + +I AE+ F W+ D LLR ++ D + +M K+ L + +L F
Sbjct: 241 WGIDAIPALIAAEKSFSWRADPLLRLAAIVP-PDAARLEAMTKRLRLSKAESAYLDRFAE 299
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355
TL+ +++ Y +G + ++ +L++ LA D+ ++L+
Sbjct: 300 APEIAATLADAALERQLYRHGTEGIVVRLRLALASARRKAETDPAFLADSASFHRLLARA 359
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
W++P+FPL G DV+K GIP G KVG +L + W+ +F + + L L ++ S
Sbjct: 360 EKWQRPVFPLNGADVLKLGIPAGPKVGEVLAELEAFWVERNFSVERATLVARLESMVRS 418
>gi|241205753|ref|YP_002976849.1| Polynucleotide adenylyltransferase region [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240859643|gb|ACS57310.1| Polynucleotide adenylyltransferase region [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 417
Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats.
Identities = 160/415 (38%), Positives = 233/415 (56%), Gaps = 6/415 (1%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M I WF D L IL+LLN + +VGGAVR+SLM L V D+DIATT+ P+ VM
Sbjct: 1 MTGIADQAWFRDPALGRILALLNADGGEGRVVGGAVRNSLMGLPVNDVDIATTLRPEPVM 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ K +PT + +GT+ ++ K F++TTLR+D+ TDGR+AKV F+ DWK D+ RR
Sbjct: 61 ERAAAAGIKAVPTGLEHGTVTLVIDGKPFEVTTLRTDVETDGRHAKVAFSTDWKGDAERR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
D TINALYAD +G+V+D VGGL D+ I+FIGDA RI ED+LRILRFFRFFA+YG
Sbjct: 121 DLTINALYADAKGEVVDLVGGLADIETHNIRFIGDAARRIAEDHLRILRFFRFFAYYGSG 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
D++GL A A+ L LS+ER+WSE+ KLL A +P A++ M + EI + +
Sbjct: 181 RPDAEGLKACSLARSKLTTLSAERVWSELRKLLGADDPGRALLWMRQVAVLTEILPESER 240
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+D + +I E+ W D LLR ++ D + ++A + L L ++
Sbjct: 241 WGIDAIPSLIATEKALGWTPDPLLRLAAIVP-PDAARMEALAARLKLSNAEAATLKAWAM 299
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355
+S ++L Y + +LK+ LA+ + + ++L
Sbjct: 300 AAPVNDDMSSAAFERLLYRNSTDGITTRLKLALAVARGKAESDFDEMARSARLNKLLDKA 359
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
HWKKP FPL G DV+ GI G +VG +L + +W+ +F + L L++
Sbjct: 360 THWKKPQFPLNGGDVISAGIASGPRVGELLAGLENQWVEENFVTDRAALLARLQE 414
>gi|159185123|ref|NP_355207.2| poly(A) polymerase [Agrobacterium tumefaciens str. C58]
gi|159140394|gb|AAK87992.2| poly(A) polymerase [Agrobacterium tumefaciens str. C58]
Length = 418
Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats.
Identities = 156/418 (37%), Positives = 246/418 (58%), Gaps = 6/418 (1%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M S+ WF L I +LLN + IVGGAVR++LM+L V D+D+ATT+ P+ V+
Sbjct: 1 MNSLAGQDWFEKPALKRIFALLNADGGEVRIVGGAVRNALMDLPVVDVDMATTVTPNVVV 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
K +PT I +GT+ ++ + F++TTLR D+ T+GR+A+V F DW+ D+ RR
Sbjct: 61 ERAKAAGIKSVPTGIEHGTVTLVIDGEGFEVTTLRRDVETNGRHAQVAFGTDWQTDAERR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
D TINALYA+++G++ID V GL D+ RT++FIGDA RI EDYLRILRFFRFFAHYG
Sbjct: 121 DLTINALYANEKGEIIDLVDGLADVETRTVRFIGDAAMRISEDYLRILRFFRFFAHYGSG 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
D+DGL AS +AK L LS+ER+WSE KL+ A++P A++ M G+ EI + ++
Sbjct: 181 RPDADGLRASARAKDKLGTLSAERVWSETKKLISARDPSRALLWMRQSGVLSEILPETEK 240
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+D + ++ EQ W D +LR ++ D++ + ++A + L + +L + +
Sbjct: 241 WGIDAIHGLVATEQALGWAADPMLRLAAIVP-PDRERLAALAARLRLSKAEAAYLTHWAS 299
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355
+ + +L Y G + + +LK+ LA +L+ + +L+
Sbjct: 300 APAVDPEMKETALDRLLYRQGVEAVKTRLKLALASARADLSAGDTAMHKVARLSTLLTRA 359
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
++KP FPL+G DV+ G+ G KVG +L +++WI+ +F L + L L+ ++
Sbjct: 360 EKFRKPGFPLSGADVMAAGVEAGPKVGEVLKSLEEKWIDVNFSLDRAALTARLKDMLE 417
>gi|325293611|ref|YP_004279475.1| tRNA nucleotidyltransferase [Agrobacterium sp. H13-3]
gi|325061464|gb|ADY65155.1| tRNA nucleotidyltransferase [Agrobacterium sp. H13-3]
Length = 418
Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats.
Identities = 157/418 (37%), Positives = 244/418 (58%), Gaps = 6/418 (1%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M S+ WF L I +LLN + IVGGAVR++LM V D+D+ATT+ PD V+
Sbjct: 1 MSSLAGRDWFEKPALKRIFALLNADGGEVRIVGGAVRNALMEQPVVDVDMATTLTPDVVV 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
K +PT I +GT+ ++ + F++TTLR D+ T+GR+A+V F DW+ D+ RR
Sbjct: 61 ERAKAAGIKAVPTGIEHGTVTLVIDGEGFEVTTLRRDVETNGRHAQVAFGTDWQIDAERR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
D TINALYAD++G++ID + GL D+ T++FIGDA RI EDYLRILRFFRFFAHYG
Sbjct: 121 DLTINALYADEKGEIIDLIDGLPDIETGTVRFIGDAAMRISEDYLRILRFFRFFAHYGSG 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
D+DGL AS +AK L LS+ER+WSE+ KLL A++P A++ M G+ EI + ++
Sbjct: 181 RPDADGLRASARAKDRLGTLSAERVWSELKKLLSARDPSRALLWMRQSGVLAEILPETEK 240
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+D + ++ EQ W +D +LR ++ D++ + ++A + L + +L + +
Sbjct: 241 WGIDAIHGLVATEQALGWTVDPMLRLAAIVP-PDRERLTALAGRLRLSKAEAAYLAHWAS 299
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355
+ + +L Y G + +LK+ LA +L+ Q + +L+
Sbjct: 300 APVIDPEMKETALDRLLYRQGVDGVKTRLKLALASARADLSGGEAAMQKVARLSTLLTRA 359
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ KP FPL+G DV+ G+ G KVG +L +++WI+ +F L + L L+ ++
Sbjct: 360 NKFHKPGFPLSGADVMAAGVESGPKVGEVLKSLEEKWIDVNFSLDRAALTARLKDMLE 417
>gi|163761621|ref|ZP_02168692.1| poly(A) polymerase [Hoeflea phototrophica DFL-43]
gi|162281217|gb|EDQ31517.1| poly(A) polymerase [Hoeflea phototrophica DFL-43]
Length = 426
Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats.
Identities = 137/408 (33%), Positives = 239/408 (58%), Gaps = 6/408 (1%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
S+ WF + L I ++ N+ ++ +VGGAVR++LM L V D+D+ATT P++V+
Sbjct: 16 SVAGEDWFANPALGRIFAVFNQDGEEIRVVGGAVRNALMGLPVSDVDLATTWAPEQVVAR 75
Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
+ +PT I +GT+ ++ + F+ITTLR D TDGR AKV F +DW+ D+ RRDF
Sbjct: 76 AEAEGIRAVPTGIDHGTVTLVIDGQGFEITTLRHDAETDGRRAKVNFGQDWQVDAERRDF 135
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
TINALYA+Q+G++ID +GGL D+ +RT++FIG A R+ EDYLR+LR+FRF+A YG
Sbjct: 136 TINALYANQKGEIIDLIGGLEDIESRTVRFIGAADARVAEDYLRVLRYFRFYAGYGSGRP 195
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D+ L A +A+ L LS+ERIW E+ L A++P A++ M G+ + + ++
Sbjct: 196 DAAALKACTRARDRLSSLSAERIWKELKLLFAARDPGRALLWMRQTGVLTAVLPETEKWG 255
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+D ++ +I E +W +D +LR + ++ D + + ++A + + R L ++
Sbjct: 256 IDSVAGLIATETALDWDVDPMLRLMAIVP-PDGERMKALAAQLKMSRAEAERLSAWAAAP 314
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIH 357
+ T +I + +L Y +G + + ++++ + + + + L+
Sbjct: 315 VVKPTAAITVLDRLLYRHGVEPLCDRIRLSIVSARTRVETDTAAMTEAAGFTRHLAHASG 374
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
W +P+FP++G D++ G+ PG ++G L + W++S+F LS++ L
Sbjct: 375 WTRPVFPVSGADLIAMGVEPGPEMGARLNALEDRWVDSNFALSKDALL 422
>gi|319408915|emb|CBI82572.1| poly(A) polymerase [Bartonella schoenbuchensis R1]
Length = 418
Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats.
Identities = 160/418 (38%), Positives = 242/418 (57%), Gaps = 10/418 (2%)
Query: 2 VSIVQH----KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57
+SI Q+ W S + +L +L+ +++ IVGGAVR+ L+N + DIDIATT LP
Sbjct: 1 MSIPQNFRKVDWLQHSHIQTLLRILSLDGEEARIVGGAVRNQLLNQPISDIDIATTCLPQ 60
Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
+V++ K +K IPT + +GT+ ++ +++TTLRSD+ TDGRYAKV F RDWK D+
Sbjct: 61 QVIKRVEKEGFKAIPTGVDFGTVTVVIESCCYEVTTLRSDIETDGRYAKVAFCRDWKKDA 120
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTINALY D G++ D VGGLND+ ++TI+FIG A RI EDYLRILRFFRFFA Y
Sbjct: 121 QRRDFTINALYCDASGQLYDEVGGLNDIESKTIRFIGVAKDRICEDYLRILRFFRFFAWY 180
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G D+ GL A I K+GL LS ER+W E+ KLL A +P ++ M GI I +
Sbjct: 181 GGGRPDAQGLKACISLKQGLHKLSPERVWGEMKKLLTASDPTRTLLWMRQSGILTLILPE 240
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
++ +D + +++ E++ WK D LLR L+ D + MA + L E + L
Sbjct: 241 TEKWGIDAIHPLVKIERILGWKADPLLRLESLLP-PDPVRLHDMAHRLRLSNEEKKRLKE 299
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT-----CFILQVL 352
+ + S +K+L Y +G + ++ +L + LA + +D + LQ+
Sbjct: 300 WAKLGIINPSCSDVCVKELIYFHGRQPVLDQLSLSLASICTGILDEDEILEKTEYYLQLY 359
Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
W+ P FP++G D++K G+ G +G L ++ W+ S F + + +L + +
Sbjct: 360 HLAQQWQIPTFPISGRDLMKKGLTQGALLGQKLKELEKIWVKSGFLMDRNELLEKIEQ 417
>gi|254719586|ref|ZP_05181397.1| CCA-adding enzyme [Brucella sp. 83/13]
gi|265984594|ref|ZP_06097329.1| polynucleotide adenylyltransferase protein [Brucella sp. 83/13]
gi|306837925|ref|ZP_07470785.1| polyA polymerase family protein [Brucella sp. NF 2653]
gi|264663186|gb|EEZ33447.1| polynucleotide adenylyltransferase protein [Brucella sp. 83/13]
gi|306407013|gb|EFM63232.1| polyA polymerase family protein [Brucella sp. NF 2653]
Length = 423
Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats.
Identities = 150/410 (36%), Positives = 233/410 (56%), Gaps = 6/410 (1%)
Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65
+ W + L + + LN+ ++ +VGGAVR++L+ V D+D+ TT LP+ +R+ S+
Sbjct: 10 KADWLNAKPLQALFTALNRDGGEARVVGGAVRNTLLGTGVSDVDLVTTHLPEETVRLASE 69
Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+K +PT + YGTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN
Sbjct: 70 AGFKPVPTGMEYGTITVVVQGHPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTIN 129
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
ALY G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++
Sbjct: 130 ALYVTADGTVIDQVGGLADIEMRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 189
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
GL AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D
Sbjct: 190 GLRASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDA 249
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ ++ ++ W+ D LLR + D + + K+ + R L ++ + +
Sbjct: 250 IHGLVRTQRDLGWQADPLLRLES-LVPPDAVRMEELGKRMKMSNAERARLEAWARADAVK 308
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360
LS +KK Y + ++ ++++ A D I ++L H+
Sbjct: 309 PGLSEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGFARLLDAAEHYDA 368
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
P+FP+TG D++ GI G +G L + WI+S F L +E L L +
Sbjct: 369 PVFPVTGGDLLARGIEKGPGLGETLRSLETLWIDSGFSLDREALLRKLDR 418
>gi|306844552|ref|ZP_07477141.1| polyA polymerase family protein [Brucella sp. BO1]
gi|306275163|gb|EFM56919.1| polyA polymerase family protein [Brucella sp. BO1]
Length = 423
Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats.
Identities = 149/410 (36%), Positives = 231/410 (56%), Gaps = 6/410 (1%)
Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65
+ W + L + LN+ ++ +VGGAVR++L+ V D+D+ATT LP+ +R+ S+
Sbjct: 10 KADWLNAKPLQALFKALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASE 69
Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN
Sbjct: 70 AGFKPVPTGMEHGTITVVVQGHPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTIN 129
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
ALY G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++
Sbjct: 130 ALYVTADGTVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 189
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
GL AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D
Sbjct: 190 GLRASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDA 249
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ ++ + W+ D LLR + D + + K+ + R L ++ + +
Sbjct: 250 IHGLVRTQSDLGWQADPLLRLES-LVPPDAVRMEELGKRMKMSNAERARLEAWARADAVK 308
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360
LS +KK Y + ++ ++++ A D I ++L H+
Sbjct: 309 PGLSEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGFARLLDAAEHYDA 368
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
P+FP+TG D++ GI G +G L + WI+S F L + L L +
Sbjct: 369 PVFPVTGGDLLARGIEKGPGLGETLRSLETLWIDSGFSLDRSALLDKLDR 418
>gi|306843101|ref|ZP_07475723.1| polyA polymerase family protein [Brucella sp. BO2]
gi|306286706|gb|EFM58259.1| polyA polymerase family protein [Brucella sp. BO2]
Length = 423
Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats.
Identities = 149/410 (36%), Positives = 231/410 (56%), Gaps = 6/410 (1%)
Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65
+ W + L + LN+ ++ +VGGAVR++L+ V D+D+ATT LP+ +R+ S+
Sbjct: 10 KADWLNAKPLQALFKALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASE 69
Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN
Sbjct: 70 AGFKPVPTGMEHGTITVVVQGHPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTIN 129
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
ALY G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++
Sbjct: 130 ALYVTADGTVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 189
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
GL AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D
Sbjct: 190 GLRASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDA 249
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ ++ + W+ D LLR + D + + K+ + R L ++ + +
Sbjct: 250 IHGLVRTQSDLGWQADPLLRLES-LVPPDAVRMEELGKRMKMSNAERARLEAWARADAVK 308
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360
LS +KK Y + ++ ++++ A D I ++L H+
Sbjct: 309 PGLSEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGFARLLDAAEHYDA 368
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
P+FP+TG D++ GI G +G L + WI+S F L + L L +
Sbjct: 369 PVFPVTGGDLLARGIEKGPGLGETLRSLETLWIDSGFSLDRSALLDKLDR 418
>gi|239832436|ref|ZP_04680765.1| CCA-adding enzyme [Ochrobactrum intermedium LMG 3301]
gi|239824703|gb|EEQ96271.1| CCA-adding enzyme [Ochrobactrum intermedium LMG 3301]
Length = 417
Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats.
Identities = 152/410 (37%), Positives = 232/410 (56%), Gaps = 6/410 (1%)
Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65
+ W L + LN+ + +VGGAVR++L+ V D+D+ATT +PD +R+ ++
Sbjct: 8 KADWLKAKPLQALFKALNRDGGEVRVVGGAVRNTLLGTGVSDVDLATTHVPDETVRLATE 67
Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+K +PT I +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN
Sbjct: 68 AGFKPVPTGIEHGTITVVVQGHPFEVTTLRQDIETNGRHAKVAFGTDWKADAERRDFTIN 127
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
ALYA G +ID VGGL D+ +RT++FIGDA RI EDYLRILRFFRFFA YG +++
Sbjct: 128 ALYATADGTIIDDVGGLADIESRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 187
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
GL AS + K GL LS+ER+WSE+ KLL A +P A++ M GG+ I + ++ +D
Sbjct: 188 GLRASARLKDGLSQLSAERVWSELKKLLSAPDPSRALLWMRQGGVLNLILPESEKWGIDA 247
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ ++ E W+ D LLR +I D + M K+ + R L ++ + +
Sbjct: 248 IHGLVRTEADLGWQADPLLRLESIIP-PDSVRMEEMGKRLKMSNAERARLEAWARADAVK 306
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360
LS +KK Y + ++ ++++ A D + ++L +
Sbjct: 307 PELSEQALKKTIYRGSKQAVLDRIRLAYAAARAEAAGSDEAMVRAGGFARLLDTAERYDA 366
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
P+FP+TG D++ GI G +G L + WI+S F L + L L +
Sbjct: 367 PVFPVTGGDLLALGIQKGPGLGEALRSLETFWIDSGFSLDRTALLDKLDR 416
>gi|150397472|ref|YP_001327939.1| polynucleotide adenylyltransferase region [Sinorhizobium medicae
WSM419]
gi|150028987|gb|ABR61104.1| Polynucleotide adenylyltransferase region [Sinorhizobium medicae
WSM419]
Length = 419
Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats.
Identities = 160/417 (38%), Positives = 240/417 (57%), Gaps = 6/417 (1%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M SI WF L I LLN + IVGGA+R+SLM L D+D+ATT P+ V+
Sbjct: 1 MTSIAAEPWFQAPQLRRIFDLLNADGGEVRIVGGAIRNSLMGLPAGDVDLATTWHPEDVI 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ K +PT I +GT+ ++ +++TTLR D+ TDGR A+V F DWKAD+ RR
Sbjct: 61 QRARGAGIKSVPTGIDHGTVTLVIEGMPYEVTTLRRDVATDGRRAEVAFGADWKADAQRR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
DFTINALY + +G+V+D+VGGL+D+ RT++FIG A R+ EDYLRILRFFRFFAHYG
Sbjct: 121 DFTINALYGNAEGEVLDHVGGLDDIATRTVRFIGSAAERVAEDYLRILRFFRFFAHYGSG 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
D++GL A +A+ L LS+ER+W+E KLL A +P A++ M G+ E+ + ++
Sbjct: 181 RPDAEGLKACAQARTKLATLSAERVWTETKKLLSAVDPGRALLWMRQAGVLGEVLPETEK 240
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+D + +I AE+ F W D LLR ++ D + +MAK+ L + +L F
Sbjct: 241 WGIDAIPALISAEKSFSWHPDHLLRLAAMVP-PDVDRLEAMAKRLRLSKAESAYLDRFAK 299
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355
L+ + + Y +G + +I +LK+ LA ++ ++L+
Sbjct: 300 APAIAPALADAALDRQLYRHGSEGIIVRLKLALAAARRKAETDPAMLAESASFQRLLARA 359
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
W++P+FPL+G DV++ GIP G +VG +L + WI +F + + L L L
Sbjct: 360 DKWQRPVFPLSGADVLEAGIPAGPRVGEVLAELENLWIERNFSVERAKLVARLETLA 416
>gi|17986746|ref|NP_539380.1| poly(A) polymerase / tRNA nucleotidyltransferase [Brucella
melitensis bv. 1 str. 16M]
gi|23502417|ref|NP_698544.1| polyA polymerase family protein [Brucella suis 1330]
gi|161619496|ref|YP_001593383.1| Poly-A polymerase/tRNA nucleotidyltransferase [Brucella canis ATCC
23365]
gi|163843806|ref|YP_001628210.1| CCA-adding enzyme [Brucella suis ATCC 23445]
gi|225627993|ref|ZP_03786029.1| CCA-adding enzyme [Brucella ceti str. Cudo]
gi|225853031|ref|YP_002733264.1| CCA-adding protein [Brucella melitensis ATCC 23457]
gi|254702274|ref|ZP_05164102.1| CCA-adding enzyme [Brucella suis bv. 5 str. 513]
gi|254704806|ref|ZP_05166634.1| CCA-adding enzyme [Brucella suis bv. 3 str. 686]
gi|254708220|ref|ZP_05170048.1| CCA-adding enzyme [Brucella pinnipedialis M163/99/10]
gi|254710590|ref|ZP_05172401.1| CCA-adding enzyme [Brucella pinnipedialis B2/94]
gi|254714773|ref|ZP_05176584.1| CCA-adding enzyme [Brucella ceti M644/93/1]
gi|254717834|ref|ZP_05179645.1| CCA-adding enzyme [Brucella ceti M13/05/1]
gi|256032084|ref|ZP_05445698.1| CCA-adding enzyme [Brucella pinnipedialis M292/94/1]
gi|256045176|ref|ZP_05448075.1| CCA-adding enzyme [Brucella melitensis bv. 1 str. Rev.1]
gi|256061606|ref|ZP_05451747.1| CCA-adding enzyme [Brucella neotomae 5K33]
gi|256114127|ref|ZP_05454881.1| CCA-adding enzyme [Brucella melitensis bv. 3 str. Ether]
gi|256160280|ref|ZP_05457974.1| CCA-adding enzyme [Brucella ceti M490/95/1]
gi|256255485|ref|ZP_05461021.1| CCA-adding enzyme [Brucella ceti B1/94]
gi|256263487|ref|ZP_05466019.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 2 str.
63/9]
gi|260169219|ref|ZP_05756030.1| CCA-adding enzyme [Brucella sp. F5/99]
gi|260565226|ref|ZP_05835710.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 1 str.
16M]
gi|260565952|ref|ZP_05836422.1| polynucleotide adenylyltransferase [Brucella suis bv. 4 str. 40]
gi|261219679|ref|ZP_05933960.1| polynucleotide adenylyltransferase protein [Brucella ceti M13/05/1]
gi|261222691|ref|ZP_05936972.1| polynucleotide adenylyltransferase [Brucella ceti B1/94]
gi|261315723|ref|ZP_05954920.1| polynucleotide adenylyltransferase protein [Brucella pinnipedialis
M163/99/10]
gi|261318161|ref|ZP_05957358.1| polynucleotide adenylyltransferase protein [Brucella pinnipedialis
B2/94]
gi|261322568|ref|ZP_05961765.1| polynucleotide adenylyltransferase protein [Brucella ceti
M644/93/1]
gi|261325612|ref|ZP_05964809.1| polynucleotide adenylyltransferase [Brucella neotomae 5K33]
gi|261752841|ref|ZP_05996550.1| polynucleotide adenylyltransferase protein [Brucella suis bv. 5
str. 513]
gi|261755499|ref|ZP_05999208.1| polynucleotide adenylyltransferase protein [Brucella suis bv. 3
str. 686]
gi|261758730|ref|ZP_06002439.1| polynucleotide adenylyltransferase [Brucella sp. F5/99]
gi|265989192|ref|ZP_06101749.1| polynucleotide adenylyltransferase [Brucella pinnipedialis
M292/94/1]
gi|265991606|ref|ZP_06104163.1| polynucleotide adenylyltransferase protein [Brucella melitensis bv.
1 str. Rev.1]
gi|265995444|ref|ZP_06108001.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 3 str.
Ether]
gi|265998655|ref|ZP_06111212.1| polynucleotide adenylyltransferase protein [Brucella ceti
M490/95/1]
gi|294852871|ref|ZP_06793544.1| poly(A) polymerase [Brucella sp. NVSL 07-0026]
gi|17982373|gb|AAL51644.1| poly(a) polymerase / tRNA nucleotidyltransferase [Brucella
melitensis bv. 1 str. 16M]
gi|23348404|gb|AAN30459.1| polyA polymerase family protein [Brucella suis 1330]
gi|161336307|gb|ABX62612.1| Poly-A polymerase/tRNA nucleotidyltransferase [Brucella canis ATCC
23365]
gi|163674529|gb|ABY38640.1| CCA-adding enzyme [Brucella suis ATCC 23445]
gi|225617156|gb|EEH14202.1| CCA-adding enzyme [Brucella ceti str. Cudo]
gi|225641396|gb|ACO01310.1| CCA-adding enzyme [Brucella melitensis ATCC 23457]
gi|260151294|gb|EEW86388.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 1 str.
16M]
gi|260155470|gb|EEW90550.1| polynucleotide adenylyltransferase [Brucella suis bv. 4 str. 40]
gi|260921275|gb|EEX87928.1| polynucleotide adenylyltransferase [Brucella ceti B1/94]
gi|260924768|gb|EEX91336.1| polynucleotide adenylyltransferase protein [Brucella ceti M13/05/1]
gi|261295258|gb|EEX98754.1| polynucleotide adenylyltransferase protein [Brucella ceti
M644/93/1]
gi|261297384|gb|EEY00881.1| polynucleotide adenylyltransferase protein [Brucella pinnipedialis
B2/94]
gi|261301592|gb|EEY05089.1| polynucleotide adenylyltransferase [Brucella neotomae 5K33]
gi|261304749|gb|EEY08246.1| polynucleotide adenylyltransferase protein [Brucella pinnipedialis
M163/99/10]
gi|261738714|gb|EEY26710.1| polynucleotide adenylyltransferase [Brucella sp. F5/99]
gi|261742594|gb|EEY30520.1| polynucleotide adenylyltransferase protein [Brucella suis bv. 5
str. 513]
gi|261745252|gb|EEY33178.1| polynucleotide adenylyltransferase protein [Brucella suis bv. 3
str. 686]
gi|262553279|gb|EEZ09113.1| polynucleotide adenylyltransferase protein [Brucella ceti
M490/95/1]
gi|262766557|gb|EEZ12346.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 3 str.
Ether]
gi|263002390|gb|EEZ14965.1| polynucleotide adenylyltransferase protein [Brucella melitensis bv.
1 str. Rev.1]
gi|263093511|gb|EEZ17545.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 2 str.
63/9]
gi|264661389|gb|EEZ31650.1| polynucleotide adenylyltransferase [Brucella pinnipedialis
M292/94/1]
gi|294821460|gb|EFG38459.1| poly(A) polymerase [Brucella sp. NVSL 07-0026]
gi|326409573|gb|ADZ66638.1| CCA-adding protein [Brucella melitensis M28]
gi|326539277|gb|ADZ87492.1| CCA-adding enzyme [Brucella melitensis M5-90]
Length = 423
Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats.
Identities = 150/410 (36%), Positives = 233/410 (56%), Gaps = 6/410 (1%)
Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65
+ W + L + + LN+ ++ +VGGAVR++L+ V D+D+ATT LP+ +R+ S+
Sbjct: 10 KADWLNAKPLQALFTALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASE 69
Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN
Sbjct: 70 AGFKPVPTGMEHGTITVVVQGYPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTIN 129
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
ALY G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++
Sbjct: 130 ALYVTADGTVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 189
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
GL AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D
Sbjct: 190 GLRASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDA 249
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ ++ + W+ D LLR + D + + K+ + R L ++ + +
Sbjct: 250 IHGLVRTQSDLGWQADPLLRLES-LVPPDAVRMEELGKRMKMSNAERARLEAWARADAVK 308
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360
LS +KK Y + ++ ++++ A D I ++L H+
Sbjct: 309 PGLSEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGVARLLDAAEHYDA 368
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
P+FP+TG D++ GI G +G L + WI+S F L +E L L +
Sbjct: 369 PVFPITGGDLLARGIEKGPGLGETLRSLETLWIDSCFSLDREALLRKLDR 418
>gi|153008942|ref|YP_001370157.1| polynucleotide adenylyltransferase region [Ochrobactrum anthropi
ATCC 49188]
gi|151560830|gb|ABS14328.1| Polynucleotide adenylyltransferase region [Ochrobactrum anthropi
ATCC 49188]
Length = 415
Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats.
Identities = 154/415 (37%), Positives = 233/415 (56%), Gaps = 6/415 (1%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M + W L + LN+ ++ +VGGAVR++L+ V D+D+ATT LP +
Sbjct: 1 MNISGKADWLKAKPLQALFKALNRDGGEARVVGGAVRNTLLGTKVSDVDLATTHLPQDTV 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
R+ ++ +K +PT I +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RR
Sbjct: 61 RLANEAGFKPVPTGIEHGTITVVVQGHPFEVTTLRQDIETNGRHAKVAFGTDWKADAERR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
DFTINALY G VID VGGL D+ +RT++FIGDA RI EDYLRILRFFRFFA YG
Sbjct: 121 DFTINALYVTADGGVIDDVGGLGDIESRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSG 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+++GL AS + K GL LS+ER+WSE+ KLL A +P A++ M G+ I + ++
Sbjct: 181 RPEAEGLRASARLKDGLTQLSAERVWSELKKLLSAPDPSRALLWMRQAGVLNLILPESEK 240
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+D + ++ E W+ D LLR +I D + M K+ + R L ++
Sbjct: 241 WGIDAIHGLVRTEADLGWQPDPLLRLESIIP-PDSVRMEEMGKRLKMSNAERARLEAWAR 299
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDI 355
+ + LS +KK Y + ++ ++++ A + D I ++L
Sbjct: 300 ADTVKPELSEQALKKTIYRGSKQAVLDRIRLAYAAARADAAGSDDAMIRAGGFARLLDAA 359
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
H+ P+FP+TG D++ GI G +G L + WI+S F L + L L +
Sbjct: 360 EHYDAPVFPVTGSDLLALGIEKGPGLGETLRSLETFWIDSGFSLDRATLLDKLDR 414
>gi|256369969|ref|YP_003107480.1| polyA polymerase family protein [Brucella microti CCM 4915]
gi|256000132|gb|ACU48531.1| polyA polymerase family protein [Brucella microti CCM 4915]
Length = 423
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 150/410 (36%), Positives = 234/410 (57%), Gaps = 6/410 (1%)
Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65
+ W + L + + LN+ ++ +VGGAVR++L+ V D+D+ATT LP+ +R+ S+
Sbjct: 10 KADWLNAKPLQALFTALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASE 69
Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN
Sbjct: 70 AGFKPVPTGMEHGTITVVVQGYPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTIN 129
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
ALY G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++
Sbjct: 130 ALYVTADGTVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 189
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
GL AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D
Sbjct: 190 GLRASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDA 249
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ ++ + W+ D LLR + D + + K+ + R L ++ + +
Sbjct: 250 IHGLVRTQSDLGWQADPLLRLES-LVPPDAVRMEELGKRMKMSNAERARLEAWARADAVK 308
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360
LS +KK Y + ++ ++++ A + D I ++L H+
Sbjct: 309 PGLSEQALKKAIYRGSKQALLDRIRLAYAAARHEAVGSDEAMIRAGGVARLLDAAEHYDA 368
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
P+FP+TG D++ GI G +G L + WI+S F L +E L L +
Sbjct: 369 PVFPITGGDLLARGIEKGPGLGETLRSLETLWIDSCFSLDREALLRKLDR 418
>gi|240850137|ref|YP_002971530.1| tRNA nucleotidyltransferase [Bartonella grahamii as4aup]
gi|240267260|gb|ACS50848.1| tRNA nucleotidyltransferase [Bartonella grahamii as4aup]
Length = 418
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 152/407 (37%), Positives = 229/407 (56%), Gaps = 6/407 (1%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
W D+ +L +L+ +++ IVGGAVR+ L+ + DIDIATT LP +V+ +
Sbjct: 11 AWLQQKDIQTLLRVLSLEGEEARIVGGAVRNQLLGQPISDIDIATTCLPQQVIARVEEAG 70
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+K IPT I++GTI ++ +++TTLR D+ TDGR+AKV F RDWK D+ RRDFTINAL
Sbjct: 71 FKAIPTGIAFGTITVVAHSCSYEVTTLRCDIETDGRHAKVAFGRDWKKDAERRDFTINAL 130
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
Y D G + D VGGL+D+ +RT++FIG A RI EDYLRILRFFRFFA YG D GL
Sbjct: 131 YCDAAGNLYDDVGGLSDIASRTVRFIGIAEDRICEDYLRILRFFRFFAWYGAGRPDVQGL 190
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
A + K GLK LSSERIW+E+ KLL A +P A++ M I IF + + +D +
Sbjct: 191 KACVSLKHGLKKLSSERIWAEMKKLLAAFDPTRALLWMRQSRILALIFPETERWGIDAIH 250
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+++ EQ WK+D LLR L+ D + MA++ + L + +
Sbjct: 251 ALVKTEQALGWKVDPLLRLESLLP-PDPIRLHEMAQRLHFSHKETTRLKEWAELEIINQN 309
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPL 362
S ++KL Y +G + ++ +L + +A + + + +++ W+ P
Sbjct: 310 CSDHFVQKLIYFHGRQPVLDQLSLSVAASHLDNLEKSDALQKAEDYVKLYQLAKKWQIPT 369
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
FP+ G+D++K G G +G L + W+ S F + + L +
Sbjct: 370 FPINGNDLIKKGFAKGVLLGKKLKELEMIWVESGFLMDRHALLEKIE 416
>gi|209550368|ref|YP_002282285.1| polynucleotide adenylyltransferase region [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209536124|gb|ACI56059.1| Polynucleotide adenylyltransferase region [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 422
Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats.
Identities = 161/420 (38%), Positives = 238/420 (56%), Gaps = 11/420 (2%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGED-----KSCIVGGAVRDSLMNLSVQDIDIATTIL 55
M + WF D L IL LLN ++ +VGGAVR+SLM+L V DIDIATT+
Sbjct: 1 MTGLADQAWFRDPALGRILELLNADGGADGGGEARVVGGAVRNSLMDLPVSDIDIATTLR 60
Query: 56 PDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115
P+ VM + K +PT + +GT+ ++ K F++TTLR+D+ TDGR+AKV F+ DWKA
Sbjct: 61 PEAVMEKAAAAGIKAVPTGLQHGTVTLVVDGKPFEVTTLRTDVETDGRHAKVAFSTDWKA 120
Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
D+ RRD T+NALYAD G+V+D VGGL D+ R I+FIGDA RI ED+LRILRFFRFFA
Sbjct: 121 DAERRDLTMNALYADANGEVVDLVGGLADIERRNIRFIGDAAKRIAEDHLRILRFFRFFA 180
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+YG D++GL A A+ LK LS+ER+WSE+ KLL A +P A++ M + EI
Sbjct: 181 YYGSGRPDAEGLKACSAARSKLKTLSAERVWSELRKLLSAADPGRALLWMRQVAVLTEIL 240
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+ + +D + ++ E+ W D LLR ++ D + ++A + L FL
Sbjct: 241 PESERWGIDAIPSLVATEKALGWAPDPLLRLAAIVP-PDAARLEALAARLKLANAEAAFL 299
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQ 350
++ +S ++L Y G + +LK+ L + + + +
Sbjct: 300 KAWAMAAPVNDDMSSAAFERLLYRNGADGITTRLKLALGVARGKAEGDFDEMARSARLTK 359
Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+L +W+KP FPL G DV+ GIP G +VG +L + +W+ +F + L L++
Sbjct: 360 LLDQAANWEKPQFPLNGGDVMSMGIPSGPRVGELLAGLENQWVEENFVSDRAALLARLQE 419
>gi|254694228|ref|ZP_05156056.1| Polynucleotide adenylyltransferase [Brucella abortus bv. 3 str.
Tulya]
gi|261214534|ref|ZP_05928815.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 3
str. Tulya]
gi|260916141|gb|EEX83002.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 3
str. Tulya]
Length = 423
Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats.
Identities = 149/410 (36%), Positives = 232/410 (56%), Gaps = 6/410 (1%)
Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65
+ W + L + + LN+ ++ VGGAVR++L+ V D+D+ATT LP+ +R+ S+
Sbjct: 10 KADWLNAKPLQALFTALNRDGGEARAVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASE 69
Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN
Sbjct: 70 AGFKPVPTGMEHGTITVVVQGYPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTIN 129
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
ALY G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++
Sbjct: 130 ALYVTADGMVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 189
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
GL AS + K G+ +S+ERIWSE+ KLL A +P A++ M G+ + + ++ +D
Sbjct: 190 GLRASARLKDGIAQISAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDA 249
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ ++ + W+ D LLR + D + + K+ + R L ++ + +
Sbjct: 250 IHGLVRTQSDLGWQADPLLRLES-LVPPDAVRMEELGKRMKMSNAERARLEAWARADAVK 308
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360
LS +KK Y + ++ ++++ A D I ++L H+
Sbjct: 309 PGLSEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGVARLLDAAEHYDA 368
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
P+FP+TG D++ GI G +G L + WI+S F L +E L L +
Sbjct: 369 PVFPITGGDLLARGIEKGPGLGETLRSLETLWIDSCFSLDREALLRKLDR 418
>gi|62290437|ref|YP_222230.1| polyA polymerase family protein [Brucella abortus bv. 1 str. 9-941]
gi|82700360|ref|YP_414934.1| polynucleotide adenylyltransferase [Brucella melitensis biovar
Abortus 2308]
gi|189024667|ref|YP_001935435.1| polynucleotide adenylyltransferase [Brucella abortus S19]
gi|237815945|ref|ZP_04594942.1| CCA-adding enzyme [Brucella abortus str. 2308 A]
gi|254689739|ref|ZP_05152993.1| Polynucleotide adenylyltransferase [Brucella abortus bv. 6 str.
870]
gi|254697883|ref|ZP_05159711.1| Polynucleotide adenylyltransferase [Brucella abortus bv. 2 str.
86/8/59]
gi|254730774|ref|ZP_05189352.1| Polynucleotide adenylyltransferase [Brucella abortus bv. 4 str.
292]
gi|256257992|ref|ZP_05463528.1| Polynucleotide adenylyltransferase [Brucella abortus bv. 9 str.
C68]
gi|260546972|ref|ZP_05822711.1| polynucleotide adenylyltransferase [Brucella abortus NCTC 8038]
gi|260755270|ref|ZP_05867618.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 6
str. 870]
gi|260758491|ref|ZP_05870839.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 4
str. 292]
gi|260762316|ref|ZP_05874659.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260884285|ref|ZP_05895899.1| polynucleotide adenylyltransferase [Brucella abortus bv. 9 str.
C68]
gi|297248822|ref|ZP_06932540.1| poly(A) polymerase [Brucella abortus bv. 5 str. B3196]
gi|62196569|gb|AAX74869.1| polyA polymerase family protein [Brucella abortus bv. 1 str. 9-941]
gi|82616461|emb|CAJ11526.1| Polynucleotide adenylyltransferase [Brucella melitensis biovar
Abortus 2308]
gi|189020239|gb|ACD72961.1| Polynucleotide adenylyltransferase [Brucella abortus S19]
gi|237789243|gb|EEP63454.1| CCA-adding enzyme [Brucella abortus str. 2308 A]
gi|260096022|gb|EEW79899.1| polynucleotide adenylyltransferase [Brucella abortus NCTC 8038]
gi|260668809|gb|EEX55749.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 4
str. 292]
gi|260672748|gb|EEX59569.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260675378|gb|EEX62199.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 6
str. 870]
gi|260873813|gb|EEX80882.1| polynucleotide adenylyltransferase [Brucella abortus bv. 9 str.
C68]
gi|297175991|gb|EFH35338.1| poly(A) polymerase [Brucella abortus bv. 5 str. B3196]
Length = 423
Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats.
Identities = 150/410 (36%), Positives = 232/410 (56%), Gaps = 6/410 (1%)
Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65
+ W + L + + LN+ ++ VGGAVR++L+ V D+D+ATT LP+ +R+ S+
Sbjct: 10 KADWLNAKPLQALFTALNRDGGEARAVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASE 69
Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN
Sbjct: 70 AGFKPVPTGMEHGTITVVVQGYPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTIN 129
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
ALY G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++
Sbjct: 130 ALYVTADGMVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 189
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
GL AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D
Sbjct: 190 GLRASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDA 249
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ ++ + W+ D LLR + D + + K+ + R L ++ + +
Sbjct: 250 IHGLVRTQSDLGWQADPLLRLES-LVPPDAVRMEELGKRMKMSNAERARLEAWARADAVK 308
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360
LS +KK Y + ++ ++++ A D I ++L H+
Sbjct: 309 PGLSEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGVARLLDAAEHYDA 368
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
P+FP+TG D++ GI G +G L + WI+S F L +E L L +
Sbjct: 369 PVFPITGGDLLARGIEKGPGLGETLRSLETLWIDSCFSLDREALLRKLDR 418
>gi|163867932|ref|YP_001609136.1| poly(A) polymerase [Bartonella tribocorum CIP 105476]
gi|161017583|emb|CAK01141.1| poly(A) polymerase [Bartonella tribocorum CIP 105476]
Length = 417
Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats.
Identities = 153/407 (37%), Positives = 236/407 (57%), Gaps = 6/407 (1%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
W SD+ +L +L+ +++ IVGGAVR+ L+ + DIDIATT LP +++ +
Sbjct: 11 AWLQKSDIQTLLRVLSLEGEEARIVGGAVRNQLLGQPISDIDIATTCLPQQIITRVEEAG 70
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+K IPT I++GTI ++ +++TTLRSD+ TDGR+AKV F RDWK D+ RRDFTINAL
Sbjct: 71 FKAIPTGIAFGTITVVAHSCAYEVTTLRSDIETDGRHAKVAFGRDWKKDAERRDFTINAL 130
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
Y D G + D VGGL+D+ ++T++FIG A +RI EDYLRILRFFRFFA YG D +GL
Sbjct: 131 YCDAAGNLYDDVGGLSDIESQTVRFIGVAENRISEDYLRILRFFRFFAWYGVGRPDGEGL 190
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
A ++ K GL+ LSSERIW+E+ KLL A +P A++ M I IF + ++ +D +
Sbjct: 191 KACVRLKDGLQKLSSERIWAEMKKLLLASDPTRALLWMRQSRILSLIFPETEKWGIDAIH 250
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
++E EQ WK+D LR L+ D + MA++ + L + +
Sbjct: 251 ALVETEQTLGWKVDPFLRLESLLP-PDPIRLHKMAQRLRFSHKETTRLKEWAELEIISQN 309
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPL 362
S ++KL Y +G + ++ +L + +A + + + T L++ + W+ P
Sbjct: 310 CSDHFVQKLIYFHGRQPVLDQLSLSIAASHVDTLEKGDALQKTEDYLKLYQLVQKWQIPT 369
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
FP+ G+D++K G G +G L + W+ S F + + L +
Sbjct: 370 FPINGNDLIKKGFSKGILLGKKLKELEMIWVESGFLMDRHALLEKID 416
>gi|319405251|emb|CBI78856.1| poly(A) polymerase [Bartonella sp. AR 15-3]
Length = 417
Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats.
Identities = 155/408 (37%), Positives = 237/408 (58%), Gaps = 6/408 (1%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
W S++ +L +L+ +++ IVGGAVR+ L+ + DIDIATT LP ++++ +
Sbjct: 11 AWLQSSNIQTLLRVLSLDGEEARIVGGAVRNQLLQQPISDIDIATTCLPQQIIKRVEEVG 70
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+K IPT I++GT+ ++ +++TTLRSD+ TDGR+AKV+F+RDWK D+ RRDFTINAL
Sbjct: 71 FKAIPTGINFGTVTVVGESCSYEVTTLRSDIETDGRHAKVIFSRDWKKDAERRDFTINAL 130
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
Y + G+V D VGGLND+ RT++FIG A RI EDYLRILRFFRFFA YG D++GL
Sbjct: 131 YCNAAGEVYDEVGGLNDIATRTVRFIGVAEQRICEDYLRILRFFRFFAWYGIGRPDAEGL 190
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
A + K GL+ LS ER+W E+ KLL A +P A++ M GI I + + +D +
Sbjct: 191 KACTRLKHGLQKLSPERVWGEMKKLLTALDPTRALLWMRQSGILTLILPETERWGIDAIH 250
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+I+ EQ F WKID LR LI D + MA++ L + + L +
Sbjct: 251 SLIKTEQAFGWKIDPFLRLESLIP-PDVMRLHDMARRLCLSNKEKIRLKEWAELELINHD 309
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDIIHWKKPL 362
S +++L Y YG + ++ +L + LA ++ Q +++ W+ P
Sbjct: 310 CSDIFMQRLIYFYGRQPVLDQLALSLAAARDHTLKDSKVVQKEECYIRLYQLAREWQIPT 369
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
FP++G D+++ G+ G +G L + WI S F + + L + +
Sbjct: 370 FPISGKDLLERGLVKGMFLGKKLKELETLWIESGFLIDRNKLLEKIEQ 417
>gi|319898483|ref|YP_004158576.1| poly(A) polymerase [Bartonella clarridgeiae 73]
gi|319402447|emb|CBI75988.1| poly(A) polymerase [Bartonella clarridgeiae 73]
Length = 417
Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats.
Identities = 154/407 (37%), Positives = 235/407 (57%), Gaps = 6/407 (1%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
W S++ +L +L++ +++ +VGGAVR+ L+ + DIDIATT LP +V++ + +
Sbjct: 12 WLQCSNIQTLLRVLSQDGEEARVVGGAVRNQLLQQPISDIDIATTCLPQQVIKRVEEVGF 71
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
K IPT I++GT+ ++ +++TTLRSD+ TDGR+AKV+F+RDWK D+ RRDFTINALY
Sbjct: 72 KAIPTGINFGTVTVVGESCSYEVTTLRSDIETDGRHAKVIFSRDWKKDAERRDFTINALY 131
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ GK+ D VGG+ND+ RTI+FIG + RI EDYLRILRFFRFFA YG+ D++GL
Sbjct: 132 CNAAGKIYDEVGGMNDIATRTIRFIGVSEQRICEDYLRILRFFRFFAWYGKGRPDAEGLK 191
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A ++ K GL+ LS ERIW E+ KLL A +P A++ M GI I + + +D +
Sbjct: 192 ACVRLKHGLQKLSPERIWEEMKKLLAASDPTRALLWMRQSGILTLILPETERWGIDAIHS 251
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+I+ EQ F WK+D LR LI MA + L + + L +
Sbjct: 252 LIKTEQAFGWKVDPFLRLESLIP-PHIVRFHDMAGRLRLSNKEKIRLKQWSELELINHNC 310
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDIIHWKKPLF 363
S ++KL Y YG ++ +L + LA + Q +++ W+ P F
Sbjct: 311 SDTFVQKLIYFYGRPPVLDQLALSLAAARDQALKDSKAAQKEECYIRLYQLAQKWQIPTF 370
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
P++G D+++ G+ G +G L + WI S F + + L + +
Sbjct: 371 PISGKDLLERGLVKGMFLGKKLKELETMWIESGFLIDRNKLLEKIEQ 417
>gi|49475914|ref|YP_033955.1| Poly(a) polymerase [Bartonella henselae str. Houston-1]
gi|49238722|emb|CAF27976.1| Poly(a) polymerase [Bartonella henselae str. Houston-1]
Length = 417
Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats.
Identities = 154/406 (37%), Positives = 234/406 (57%), Gaps = 6/406 (1%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
W S + +L +L+ +++ IVGGAVR+ L+ + D+DIATT LP +++ +
Sbjct: 11 DWLQHSHIQKLLHVLSLDGEEARIVGGAVRNQLLEQPISDVDIATTCLPQQIIVRVEEAG 70
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+K IPT I++GT+ ++ + +++TTLRSD+ TDGR+AKV F RDW+ D+ RRDFT+NAL
Sbjct: 71 FKAIPTGIAFGTVTVVSQSCSYEVTTLRSDIETDGRHAKVAFGRDWQKDAERRDFTMNAL 130
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
Y D G + D VGGL+D+ +RT++FIG A RI EDYLRILRFFRFFA YG D GL
Sbjct: 131 YCDAAGNLYDAVGGLDDIASRTVRFIGIAEKRIREDYLRILRFFRFFAWYGAGRPDVQGL 190
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
A + K GL+ LSSERIW E+ KLL A NP+ A++ M GI IF + ++ +D +
Sbjct: 191 KACVCLKHGLQKLSSERIWGEMKKLLTAPNPIRALLWMRQSGILTLIFPETEKWGIDAIH 250
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+++ EQ WK+D LLR L+ D + MA + L + + L + +
Sbjct: 251 SLVKTEQDLGWKVDPLLRLESLLP-PDPVRLYEMAHRLPLSHKEKTRLKEWAELEIICQN 309
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHY-----NNLTHQDTCFILQVLSDIIHWKKPL 362
S ++KL Y +G + ++ +L + LA + N Q +++ W+ P
Sbjct: 310 CSDHFLQKLIYFHGRQPVLDQLSLSLAAAHVDVLKGNEALQKVEDYMRLYQFAQKWQIPT 369
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
FP++G D++K G G +G L + WI S F + + L +
Sbjct: 370 FPISGKDLMKKGFSKGVLLGQKLKELETLWIESGFLIDRNSLLEKI 415
>gi|90418300|ref|ZP_01226212.1| polynucleotide adenylyltransferase [Aurantimonas manganoxydans
SI85-9A1]
gi|90337972|gb|EAS51623.1| polynucleotide adenylyltransferase [Aurantimonas manganoxydans
SI85-9A1]
Length = 413
Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats.
Identities = 145/414 (35%), Positives = 227/414 (54%), Gaps = 7/414 (1%)
Query: 1 MV-SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59
M + ++ W L +L+ L+ +++ IVGGAVR+S++ V DIDIATT LPD
Sbjct: 1 MTATTIEADWLTTPGLQTLLATLSADGEEARIVGGAVRNSVLGHPVSDIDIATTTLPDET 60
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+R ++ +PT I +GT+ ++ + +++TTLR D+ TDGR+A V F RDWKAD+ R
Sbjct: 61 VRRVEAAGFRAVPTGIEHGTVTVVTPEHAYEVTTLRRDIETDGRHAAVHFGRDWKADAER 120
Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
RDFTINALYA G ++D VGG+ DL ++ ++FIGD+ RI EDYLRILRFFRFFA YG+
Sbjct: 121 RDFTINALYARADGSIVDLVGGIEDLGSQALRFIGDSETRIREDYLRILRFFRFFAWYGK 180
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
D+ G+ A+ + K GL LS ER+W+E+ KLL A +P A++ M G+ I + +
Sbjct: 181 GRPDAAGIRAATRLKDGLDGLSVERVWTELKKLLAAPDPSRALLWMRQTGVLTRILPESE 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+D + ++E+E F W D +LR ++ D + MA++ L R ++ F
Sbjct: 241 RWGIDAIHSLVESEGAFGWAPDPMLRLAAIVP-PDPARLTQMAERLKLSNADRDRIVGFA 299
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT-----CFILQVLSD 354
+ S + Y + L++ +A + L
Sbjct: 300 IAEPAKPEESDSAFRTRLYFGDGVAIADGLRLAVASARGKAESSRETLDAIARLTGQLEI 359
Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ + P FP++G+D+ GI PG ++G L ++ W +S F L +E L +
Sbjct: 360 VATFAPPAFPVSGEDLKSAGIAPGPEMGKTLDRLRKLWASSGFVLGRESLLKRV 413
>gi|114707044|ref|ZP_01439943.1| probable poly(A) polymerase [Fulvimarina pelagi HTCC2506]
gi|114537594|gb|EAU40719.1| probable poly(A) polymerase [Fulvimarina pelagi HTCC2506]
Length = 415
Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats.
Identities = 160/409 (39%), Positives = 235/409 (57%), Gaps = 2/409 (0%)
Query: 1 MV-SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59
M + ++ W D L ++L++LN+GE+++ IVGG VR++L+ V DIDIATT LPD
Sbjct: 1 MTATRIEEDWLRDPLLQSVLAVLNEGEEEARIVGGPVRNTLLGQPVSDIDIATTCLPDEA 60
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
R + +KV+PT I +GTI +I + F++TTLR DL TDGR+A+V F RDW+AD+ R
Sbjct: 61 SRRIESSGFKVVPTGIEHGTITVIANGRPFEVTTLREDLSTDGRHAEVKFGRDWEADAWR 120
Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
RDFTINALYA G+++D VGGL D+ R ++FIGDA RI EDYLRILRF+RFFA YG
Sbjct: 121 RDFTINALYAKADGEIVDPVGGLADIEGRVLRFIGDAEARIKEDYLRILRFYRFFAWYGR 180
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
D+ G+ AS K K GL LS+ERIW E+ KLL A +P A++ M G+ + + +
Sbjct: 181 GRPDAAGIRASAKLKAGLAHLSAERIWMELKKLLGAPDPSRALLWMRQAGVLTAVLPESE 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+D + +I+ E F W D LLR + +I D I +A + L ++ R L+++
Sbjct: 241 RWGIDNIHPLIDTETQFGWSADPLLRLLAIIP-PDAARIGELAGRLKLSKKERDRLLAYA 299
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ S ++ Y + +LK+ L L Q + + L+ +
Sbjct: 300 DAENPSAEESDGALRARLYFGDPTAIADRLKLALTLARQKEDLQVSSRLTAQLAVASGFA 359
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
P FPL G+D++ G PG +G + K+ W F +S+E L
Sbjct: 360 PPDFPLNGEDMLAAGYSPGPDLGKAMQRMKRLWAEGGFVMSREVLLDKA 408
>gi|260462573|ref|ZP_05810780.1| Polynucleotide adenylyltransferase region [Mesorhizobium
opportunistum WSM2075]
gi|259031769|gb|EEW33038.1| Polynucleotide adenylyltransferase region [Mesorhizobium
opportunistum WSM2075]
Length = 420
Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 153/413 (37%), Positives = 230/413 (55%), Gaps = 6/413 (1%)
Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65
+ W D L +L+ L +G +++ I GGAVR++LM V D DIATT LP+ +R
Sbjct: 8 RADWLADKHLQRLLAALTEGGEEARIAGGAVRNTLMGQPVADTDIATTCLPEETIRRAQA 67
Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+K +PT I +GTI ++ K ++ITTLR+D+ TDGR AKV F RDWK D+ RRDFTIN
Sbjct: 68 QGFKPVPTGIEHGTITVVAGGKPYEITTLRADIETDGRRAKVSFGRDWKLDAERRDFTIN 127
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
ALYA+ GKV+D VGG+ D+ R ++FIGD RI EDYLRILRFFRFFA YGE D++
Sbjct: 128 ALYAEADGKVVDLVGGIADIEARRLRFIGDPEARIREDYLRILRFFRFFAWYGEGRPDAE 187
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
GL A + K GL LS+ER+WSE+ +LL A +P A++ M G+ + + +D
Sbjct: 188 GLKACARLKDGLAQLSAERVWSELKRLLSAPDPSRALLWMRQAGVLTAALPESERWGIDA 247
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ + +AE+ W D++LR ++ D + +A++ L L + +
Sbjct: 248 IHGLAKAEKDLGWPADAMLRLEAIVP-PDAARMKILAERLKLSTAEADRLRHWGLTAAVE 306
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360
+ E+ K Y + + +L++ LA + + ++L+ + W+K
Sbjct: 307 PKTTEGELAKRLYRGDRQGFVDRLRLSLASARVRAVDDNDALLEAGGFSRLLAFALKWEK 366
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
P FPL G D+ G PG K+G IL + + EW+ + F + L K +
Sbjct: 367 PSFPLKGADLTALGAKPGPKLGEILKNLEAEWVEAGFAPDRGALLERAAKALE 419
>gi|13472434|ref|NP_104001.1| poly(A) polymerase [Mesorhizobium loti MAFF303099]
gi|14023180|dbj|BAB49787.1| probable poly(A) polymerase [Mesorhizobium loti MAFF303099]
Length = 420
Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats.
Identities = 153/413 (37%), Positives = 236/413 (57%), Gaps = 6/413 (1%)
Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65
+ W D L +L+ L +G +++ I GGAVR++LM V D+DIATT LP ++R
Sbjct: 8 RANWLADKHLQRLLAALAEGSEEARIAGGAVRNTLMGQPVADVDIATTCLPQEIIRRAEA 67
Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+K +PT I +GT+ ++ K ++ITTLR+D+ TDGR AKV F RDWK D+ RRDFTIN
Sbjct: 68 EGFKPVPTGIEHGTVTVVAGGKPYEITTLRADVETDGRRAKVSFGRDWKLDAERRDFTIN 127
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
ALYA+ G+V+D VGG+ D+ R ++FIGDA RI EDYLRILRFFRFFA YGE D++
Sbjct: 128 ALYAEADGRVVDLVGGIADIEARRLRFIGDAEARIREDYLRILRFFRFFAWYGEGRPDAE 187
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
GL A + K+GL LS+ERIW+E+ KLL A +P A++ M G+ + ++ +D
Sbjct: 188 GLKACARLKEGLAQLSAERIWAELKKLLSASDPSRALLWMRQAGVLSAALPESEKWGIDA 247
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ + +AE+ W D +LR ++ D + ++A++ L + +
Sbjct: 248 IHGLTKAEKDLGWAADPMLRLEAIVP-PDAARMKTLAERLRFSTAESDRLRHWALATAVE 306
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360
++ E+ K Y + ++ +L++ LA + + ++L+ + W+K
Sbjct: 307 PKVTEAELAKRLYRGDRQGLVDRLRLSLAGARVRAVEDNNALLEAGGFSRLLAFALKWEK 366
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
P+FPL G D+ G PG K+G IL + + EWI + F + L K +
Sbjct: 367 PVFPLKGADLTALGATPGPKLGEILNNLETEWIEAGFAPDRGALLERAAKALE 419
>gi|319781858|ref|YP_004141334.1| polynucleotide adenylyltransferase region [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317167746|gb|ADV11284.1| Polynucleotide adenylyltransferase region [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 421
Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 157/414 (37%), Positives = 234/414 (56%), Gaps = 6/414 (1%)
Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65
+ W D L +L L +G +++ + GGAVR++LM+ V DIDIATT LP+ +R
Sbjct: 8 RADWLTDKHLQRLLFALAEGGEEARVAGGAVRNTLMDQPVADIDIATTCLPEETLRRAEA 67
Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
R+K +PT I +GTI ++ K ++ITTLR+D+ TDGR AKV F RDWK D+ RRDFTIN
Sbjct: 68 ERFKAVPTGIEHGTITVVAGGKPYEITTLRADIETDGRRAKVSFGRDWKLDAERRDFTIN 127
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
ALYA+ GKV+D VGG+ D+ R ++FIGD RI EDYLRILRFFRFFA YG+ D++
Sbjct: 128 ALYAEADGKVVDLVGGIADIEARRLRFIGDPEARIREDYLRILRFFRFFAWYGDGRPDAE 187
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
GL A + K+GL LSSERIWSE+ KLL A +P A++ M G+ + ++ +D
Sbjct: 188 GLKACARLKEGLAQLSSERIWSELKKLLSAPDPSRALLWMRQAGVLTAALPESEKWGIDA 247
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ + +A + W D LLR ++ D + S+A++ L L + +
Sbjct: 248 IHGLAKAGKDLGWAPDPLLRLEAIVP-PDAARMKSLAERLKLSTAEADRLRHWALATAVE 306
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360
+ E+ K Y + + +L++ LA + + ++L W+K
Sbjct: 307 PKTTEGELAKRLYRGDRQGFVDRLRLSLAAARMRAVEDNEALLEAGGFSRLLGFATKWEK 366
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
PLFPL G D+ G PG K+G IL + + EW+ + F ++ L + + +
Sbjct: 367 PLFPLKGADLTVLGATPGPKLGEILRNLEAEWVEAGFAPDRDALLKRAAEALQA 420
>gi|148560186|ref|YP_001259427.1| polyA polymerase family protein [Brucella ovis ATCC 25840]
gi|148371443|gb|ABQ61422.1| polyA polymerase family protein [Brucella ovis ATCC 25840]
Length = 405
Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats.
Identities = 148/400 (37%), Positives = 229/400 (57%), Gaps = 6/400 (1%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
+ + LN+ ++ +VGGAVR++L+ V D+D+ATT LP+ +R+ S+ +K +PT +
Sbjct: 2 QALFTALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASEAGFKPVPTGM 61
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
+GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTINALY G V
Sbjct: 62 EHGTITVVVQGYPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTINALYVTADGTV 121
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
ID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++GL AS + K
Sbjct: 122 IDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAEGLRASARLKD 181
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D + ++ +
Sbjct: 182 GIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDAIHGLVRTQSD 241
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
W+ D LLR + D + + K+ + R L ++ + + LS +KK
Sbjct: 242 LGWQADPLLRLES-LVPPDAVRMEELGKRMKMSNAERARLEAWARADVVKPGLSEQALKK 300
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKKPLFPLTGDDV 370
Y + ++ ++++ A D I ++L H+ P+FP+TG D+
Sbjct: 301 AIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGVARLLDAAEHYDAPVFPITGGDL 360
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ GI G +G L + WI+S F L +E L L +
Sbjct: 361 LARGIEKGPGLGETLRSLETLWIDSCFSLDREALLRKLDR 400
>gi|49474494|ref|YP_032536.1| Poly(A) polymerase [Bartonella quintana str. Toulouse]
gi|49239998|emb|CAF26412.1| Poly(A) polymerase [Bartonella quintana str. Toulouse]
Length = 417
Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats.
Identities = 152/393 (38%), Positives = 227/393 (57%), Gaps = 6/393 (1%)
Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
+L+ +++ IVGGAVR+ L+ + DID+ATT P +V+ + +K IPT I++GT+
Sbjct: 24 VLSLDGEEARIVGGAVRNQLLEQPISDIDVATTCFPQQVIARVEEAGFKAIPTGIAFGTV 83
Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140
++ + +++TTLRSD+ TDGR+AKV F RDW+ D+ RRDFT+NALY D G + D VG
Sbjct: 84 TVVAQSCSYEVTTLRSDIETDGRHAKVAFDRDWQKDAERRDFTMNALYCDAAGNLYDAVG 143
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200
GLND+ +RTI+FIG +RI EDYLRILRFFRFFA YG D GL A + K GL+ L
Sbjct: 144 GLNDVASRTIRFIGIPENRIREDYLRILRFFRFFAWYGAGRPDVQGLKACVYLKHGLQKL 203
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
SSERIW E+ KLL A NP A++ M GI IF + ++ +D + +++ EQ WK+
Sbjct: 204 SSERIWGEMKKLLAAPNPTRALLWMRQSGILTLIFPETEKWGIDAIHSLVKTEQALGWKV 263
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
D LLR L+ D + MA + L + L + + S ++KL Y Y
Sbjct: 264 DPLLRLESLLP-PDPIRLHEMAHRLHLSYKETKRLKEWAELEIISQNCSENFVQKLIYFY 322
Query: 321 GDKVMIAKLKIFLALHY-----NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375
G + ++ +L + L + N Q +++ W+ P FP++G D++K G+
Sbjct: 323 GRQPVLDQLSLSLVAAHVDALKGNEALQKAENYMRLYQFAQKWQIPTFPVSGKDLMKKGL 382
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G +G L ++ WI S F + + L +
Sbjct: 383 AKGVLLGQKLKELERIWIESGFSIDRNSLLEKI 415
>gi|27377580|ref|NP_769109.1| poly(A) polymerase [Bradyrhizobium japonicum USDA 110]
gi|27350724|dbj|BAC47734.1| poly(A) polymerase [Bradyrhizobium japonicum USDA 110]
Length = 418
Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats.
Identities = 129/410 (31%), Positives = 201/410 (49%), Gaps = 6/410 (1%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ W +L LL +++ +VGGAVR++L+ L DIDIATT P+ V+R
Sbjct: 7 LADAPWLISGGTARVLQLLGADGEEARVVGGAVRNALLGLVPGDIDIATTARPEEVVRRA 66
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
K +PT I +GT+ ++ +++TTLR D T GR AKV F RDW D+ RRDFT
Sbjct: 67 KAAGIKSVPTGIDHGTVTLVIDGHPYEVTTLREDTETFGRKAKVAFGRDWVKDAERRDFT 126
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+N L D G V D+VGG+ D R R ++FIGD RI EDYLRILRFFR A +G D
Sbjct: 127 MNGLSVDATGVVYDHVGGIADARARRVRFIGDPDQRIAEDYLRILRFFRIHAAFGAGEPD 186
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
DG +A I+ + GL LS+ER+ E+ KLL A A++ M GG+ + + V
Sbjct: 187 RDGYLACIRGRAGLASLSAERVRMEMLKLLVAGGASAAVLAMAEGGLLQALIGGVAYTG- 245
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
L+ ++ E+ S+ R + ++ + +A + L L S + +
Sbjct: 246 -PLASMVAIERELGL-PASVTRRLAALTVAVTEDAKRVATRLRLSNAEAKALDSMGHRWW 303
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
T ++L Y G + ++ + A ++ + ++ W P F
Sbjct: 304 RFATKDEANARRLLYRLGAERYHDRVLLGWARAAGDV---HSSRWRELAELPQRWTAPKF 360
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
PL D + G+ G +G++L + W+ + F L + L + + A
Sbjct: 361 PLRAADFIARGMAEGPALGHVLTLAEDAWLAADFPLEEAALASIADQAAA 410
>gi|288958320|ref|YP_003448661.1| poly(A) polymerase [Azospirillum sp. B510]
gi|288910628|dbj|BAI72117.1| poly(A) polymerase [Azospirillum sp. B510]
Length = 430
Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats.
Identities = 125/414 (30%), Positives = 190/414 (45%), Gaps = 11/414 (2%)
Query: 1 MV---SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M + W + + L G + VGG VRD+ + V+DIDIAT P+
Sbjct: 12 MTVAARLSPQPWMTAPESRALFDALASGGADARFVGGCVRDAWLGRPVKDIDIATHAPPE 71
Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
RVM + +VIPT +++GT+ +C K ++ITTLR D+ + GR+A+V FT DW D+
Sbjct: 72 RVMELLEAEGIRVIPTGLAHGTVTALCGGKPYEITTLRRDVESFGRHARVEFTDDWIEDA 131
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRD T+NA+ G + D GGL DL ++F+G+A RI ED LR+LRFFRF AHY
Sbjct: 132 ARRDLTMNAMSCTPDGDLFDPFGGLADLAAGRVRFVGEARRRIAEDVLRLLRFFRFHAHY 191
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G + D++ L A L LS ER+ E+ +LL A M GI + +
Sbjct: 192 GRGDPDAEALAACRDLAPRLPTLSGERVRGELLRLLTAPCAAAVWRLMMGQGIMVHLLPE 251
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+ D+L ++I E+ D + R + D+ A+ L R L++
Sbjct: 252 AMDT--DRLERLITVERDLGETPDPI-RRLATTLDGDRPGAQKAAEALRLSNHERDRLLA 308
Query: 298 FFNCNFNQKTLSIPEIKKL-FYLYGDKVMI-AKLKIFLALHYNNLTHQDTCFILQVLSDI 355
+ + Y GD + L I A H L L V D+
Sbjct: 309 LVEPPVALAPCEERKSLRQALYRVGDAGLYGDLLLIAAARHDGPLELMALRGALAVAGDL 368
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ P+ G D+++ +P G VG L + WI F+ +++ + R
Sbjct: 369 PGLR---LPIAGRDLLELDLPRGPAVGAALKRVEAWWIAEDFRPTRDACLEMAR 419
>gi|327188338|gb|EGE55555.1| poly(A) polymerase protein [Rhizobium etli CNPAF512]
Length = 425
Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats.
Identities = 161/423 (38%), Positives = 238/423 (56%), Gaps = 14/423 (3%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKS--------CIVGGAVRDSLMNLSVQDIDIAT 52
M + WF D L IL+LLN G +VGGAVR+SLM L V DIDIAT
Sbjct: 1 MTGLADQAWFRDPALGRILALLNAGGGAGGGSDGGEGRVVGGAVRNSLMGLPVSDIDIAT 60
Query: 53 TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD 112
T+ P+ V+ + K +PT + +GT+ ++ K F++TTLR+D+ TDGR+AKVVF+ D
Sbjct: 61 TLTPEIVIERAAAAGIKAVPTGLQHGTVTLVIDGKPFEVTTLRTDVETDGRHAKVVFSTD 120
Query: 113 WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
WKAD+ RRD TINALYAD +G+V+D VGGL D+ R I+FIGDA RI ED+LRILRFFR
Sbjct: 121 WKADAERRDLTINALYADARGEVVDLVGGLADIEARNIRFIGDAATRIAEDHLRILRFFR 180
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
FFA+YG D++GL A A+ LK LS+ER+WSE+ KLL A +P A++ M +
Sbjct: 181 FFAYYGSGRPDAEGLKACAAARSKLKTLSAERVWSELRKLLGAADPGRALLWMRQVAVLT 240
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
EI + + +D + ++ E+ W D LLR ++ D + ++A + L
Sbjct: 241 EILPETERWGIDAIPALVATEKALGWAPDPLLRLAAIVP-PDAARLEALAARLKLSNAEA 299
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCF 347
L ++ ++ ++L Y G + +LK+ L + +
Sbjct: 300 AALKAWAMAAPIDDEITSAAFERLLYRNGADGITTRLKLALGVARAKAEGDLSEMARSAR 359
Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+ ++L + WKKP FP+ G DV+ GIP G +VG +L + +W+ +F + L
Sbjct: 360 LGKLLDRAMTWKKPQFPVNGADVIAAGIPSGPRVGELLGSLENQWVEENFASDRAVLLAR 419
Query: 408 LRK 410
L++
Sbjct: 420 LQE 422
>gi|39934263|ref|NP_946539.1| polynucleotide adenylyltransferase region [Rhodopseudomonas
palustris CGA009]
gi|39648111|emb|CAE26631.1| possible poly(A) polymerase [Rhodopseudomonas palustris CGA009]
Length = 418
Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats.
Identities = 136/416 (32%), Positives = 206/416 (49%), Gaps = 9/416 (2%)
Query: 1 MVSIV---QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M + W H +L+LLN +++ +VGGAVR++L+ + D+DIATT LPD
Sbjct: 1 MTDMPVRSDAPWLHTGPAARVLALLNGDGEEARVVGGAVRNALLGEPIGDVDIATTALPD 60
Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
V+R K +PT I +GT+ ++ F+ITTLR D+ T GR AKV F RDW+ D+
Sbjct: 61 EVIRRAKAGGIKAVPTGIEHGTVTLVVEGHGFEITTLREDVETFGRKAKVAFGRDWERDA 120
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTINAL G V DYVGGL D+ R ++FIGD RI EDYLRILRFFR A Y
Sbjct: 121 QRRDFTINALSMSADGTVHDYVGGLVDIAARRVRFIGDPDQRIAEDYLRILRFFRIHAAY 180
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G D D +A I+ + GL LS+ER E+ KL+ A ++V M +GG+ +
Sbjct: 181 GAGEPDRDAYLACIRGRGGLAALSAERQRMEMLKLMIADGAEASVVAMADGGLLLAVLGG 240
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
V + + +I AE+ + D + R ++ + +A++ L L S
Sbjct: 241 VAYLG--AFAAMIGAERALGLEADPVRRLGA-LAVAVTEDAKRLAQRLRLSNVEAKRLDS 297
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
+ + + ++ Y G+ ++ + A D Q+++
Sbjct: 298 MGHRWWRLAGMDEATARRRLYRLGESRFHDRMMLAWARAGRGA---DPAPWRQLIALPER 354
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
W+ P FPL D + G G +G++L + W+ + F L L + + A
Sbjct: 355 WQAPTFPLKAADFLARGFAAGPALGHVLTLAEDAWLAADFPLDPAALRTIADQTAA 410
>gi|192289790|ref|YP_001990395.1| polynucleotide adenylyltransferase region [Rhodopseudomonas
palustris TIE-1]
gi|192283539|gb|ACE99919.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas
palustris TIE-1]
Length = 418
Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 136/416 (32%), Positives = 205/416 (49%), Gaps = 9/416 (2%)
Query: 1 MVSIV---QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M + W H +L+LLN +++ +VGGAVR++L+ + D+DIATT LPD
Sbjct: 1 MTDMPVRSDAPWLHTGPAARVLALLNGDGEEARVVGGAVRNALLGEPIGDVDIATTALPD 60
Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
V+R K +PT I +GT+ ++ F+ITTLR D+ T GR AKV F RDW+ D+
Sbjct: 61 EVIRRAKAGGIKAVPTGIEHGTVTLVVEGHGFEITTLREDVETFGRKAKVAFGRDWERDA 120
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTINAL G V DYVGGL D+ R ++FIGD RI EDYLRILRFFR A Y
Sbjct: 121 QRRDFTINALSMSADGTVHDYVGGLVDIAARRVRFIGDPDQRIAEDYLRILRFFRIHAAY 180
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G D D +A I+ + GL LS+ER E+ KL+ A ++V M +GG+ +
Sbjct: 181 GAGEPDRDAYLACIRGRGGLAALSAERQRMEMLKLMIAGGAEASVVAMADGGLLLAVLGG 240
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
V + + +I AE+ + D + R ++ + +A + L L S
Sbjct: 241 VAYLG--AFAAMIGAERALGLEADPVRRLGA-LAVAVTEDAKRLALRLRLSNVEAKRLDS 297
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
+ + + ++ Y G+ ++ + A D Q+++
Sbjct: 298 MGHRWWRLAGMDEATARRRLYRLGEARFHDRMMLAWARAGRGA---DPAPWRQLIALPQR 354
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
W+ P FPL D + G G +G++L + W+ + F L L + + A
Sbjct: 355 WQAPTFPLKAADFLARGFAAGPALGHVLTLAEDAWLAADFPLDPAALRTIADQTAA 410
>gi|118591958|ref|ZP_01549353.1| poly(A) polymerase [Stappia aggregata IAM 12614]
gi|118435601|gb|EAV42247.1| poly(A) polymerase [Stappia aggregata IAM 12614]
Length = 414
Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats.
Identities = 129/410 (31%), Positives = 219/410 (53%), Gaps = 5/410 (1%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ Q W + + + + + D++ +VGGAVR++L+ V D+DIATT P+ VM+
Sbjct: 9 LQQADWLKSPGIQAVFAAIEQDGDEARVVGGAVRNTLLGHPVPDVDIATTASPEMVMKRA 68
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
K I T I +GTI ++ +++TTLR D+ T GR A+VVF R+W D+ RRDFT
Sbjct: 69 RAAGLKPIGTGIDHGTITVVSSGYPYEVTTLREDVETFGRQARVVFGRNWTRDAERRDFT 128
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+NALY D+ G++ D +GGL+D NR ++FIGD RI EDYLRILRFFR +A YG ++D
Sbjct: 129 LNALYVDRHGRLHDPLGGLDDCLNRHVRFIGDPDTRIREDYLRILRFFRIYAAYGAGDMD 188
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
+DGL A ++ + GL+ LS+ERI E+ +LL A A+ + + G+++ + +
Sbjct: 189 ADGLGACLRQRDGLRHLSAERIGHEMRRLLRAPLAATALKLLNDCGLWEIATGGLAR--I 246
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS-FFNCN 302
+ + E D L +V+++ ++ + + + L R + + +
Sbjct: 247 EDYLALRSLEGSASEVTDPEL-GLVVLTGFVREDVERVCDRLRLSNAERDRMRTAWAAMR 305
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
++ +PE + + Y +G + I L A F +L + P
Sbjct: 306 CLRQADKLPEAEDMVYQFGRQGAIDGLLGRWAGLRAQGKDPGDAFAG-LLDRLREVPVPQ 364
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
FP+ G D++ G PG+ +G+ L + +W +S F L++++L ++I
Sbjct: 365 FPIKGADLIAAGHAPGRALGDSLKALEADWRDSGFSLTRDELLVRAEQVI 414
>gi|254503107|ref|ZP_05115258.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Labrenzia alexandrii DFL-11]
gi|222439178|gb|EEE45857.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Labrenzia alexandrii DFL-11]
Length = 415
Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats.
Identities = 139/407 (34%), Positives = 219/407 (53%), Gaps = 4/407 (0%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ W + + S LN+ D + +VGGA+R++L+ V DIDIATT P VM+
Sbjct: 9 LAAANWLRSPGIQAVFSALNRDNDSARVVGGAIRNTLLGHPVPDIDIATTATPQDVMQRA 68
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
+ K I T I +GTI +I +++TTLR D+ T GR AKVVF RDWK D+LRRDFT
Sbjct: 69 ADAGLKPIGTGIDHGTITVISDGFPYEVTTLREDVETYGRQAKVVFGRDWKKDALRRDFT 128
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+NALY D GK+ D +GGL D R ++FIGD R+ EDYLRILRFFR +A YG+ ++D
Sbjct: 129 MNALYVDSLGKLYDPLGGLEDCLARRVRFIGDPDMRLREDYLRILRFFRIYAAYGDGDMD 188
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
++GL A ++ + GL+ LS+ERI E+ +L+ A A+ MY+ G+++ + +
Sbjct: 189 AEGLGACLRQRDGLRHLSAERIGHEMRRLVSAPKAAVAVRMMYDCGLWEIATGGL--AKI 246
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR-YFLISFFNCN 302
+ + + + D + V +S ++ + +A + L R I +
Sbjct: 247 EDFECLRHLDALAPETQDPEVGLTV-LSGFVREDVDRVADRLRLSNAERKRMQICWEAYK 305
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+++ +P++K L Y +G + I L + A D + + + P+
Sbjct: 306 TFRQSDQMPDLKTLLYTHGRQGAIDGLLAYWAAFEAQKRLGDQPDFEDAVLKLKSVEVPV 365
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
FPL G D++ G PG +VG +L ++ W + F LS++DL L
Sbjct: 366 FPLKGADMIALGHRPGPQVGKVLKTLEKIWCENGFALSKQDLLARLE 412
>gi|148253774|ref|YP_001238359.1| putative poly(A) polymerase [Bradyrhizobium sp. BTAi1]
gi|146405947|gb|ABQ34453.1| putative poly(A) polymerase [Bradyrhizobium sp. BTAi1]
Length = 417
Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats.
Identities = 131/415 (31%), Positives = 203/415 (48%), Gaps = 8/415 (1%)
Query: 1 MV--SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58
M ++ W +L+LLN +++ +VGGAVR++L+ + + DIDIATT LP
Sbjct: 1 MTEVRVLSAPWLSSGPAARVLALLNSDGEEARVVGGAVRNALLGIDIGDIDIATTALPAE 60
Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
V+R K +PT I +GT+ ++ F++TTLR D T GR AKV F RDW D+
Sbjct: 61 VIRRAKAASIKSVPTGIDHGTVTLVLEGHPFEVTTLREDTETFGRKAKVEFGRDWIGDAH 120
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDFTINAL G V D+VGGL D+ R ++FIGD RI EDYLRILRFFR + +G
Sbjct: 121 RRDFTINALSVGPDGVVHDHVGGLADIAARRVRFIGDPAQRIAEDYLRILRFFRIHSAFG 180
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
D DG +A I + GL LS+ER+ E+ KLL + + A+ M +GG+ I V
Sbjct: 181 HGVPDRDGYLACIAGRAGLATLSAERVRMEMLKLLVTEGAVGAVTAMTDGGLLTAILGGV 240
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ + +IE E+ ++ R + ++ + + + L L
Sbjct: 241 AYLG--PFAAMIEIERTLALPPSAV-RRLAALAVAVTEDARRLGARLKLSNAETKALDGM 297
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + T ++L Y G+ V +L + A + D ++ +
Sbjct: 298 GHRWWRLATADEARARRLLYRLGETVYRDRLMLGWARAGRD---HDAQRWRELALLPQRF 354
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
P PL D + G+ G +G++L + W+ + F L + L + + A
Sbjct: 355 TPPKLPLKAADFIARGVAEGPLLGHVLTLAEDAWLAADFPLDEASLSAIADQAAA 409
>gi|85714277|ref|ZP_01045265.1| polynucleotide adenylyltransferase region protein [Nitrobacter sp.
Nb-311A]
gi|85698724|gb|EAQ36593.1| polynucleotide adenylyltransferase region protein [Nitrobacter sp.
Nb-311A]
Length = 418
Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 142/411 (34%), Positives = 212/411 (51%), Gaps = 6/411 (1%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
+ W + +L+LLN +++ +VGGAVR++LM L V +ID+ATT P+ VMR
Sbjct: 6 PLCDAGWLKSGPAVRVLALLNGNGEEARVVGGAVRNALMGLPVGEIDVATTAPPEEVMRR 65
Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
+ R K IPT I +GT+ ++ + F+ITTLR D+ T GR AKV F RDW D+ RRDF
Sbjct: 66 AASARIKSIPTGIEHGTVTLVVEGRPFEITTLREDVETFGRRAKVAFGRDWARDAERRDF 125
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
TIN L D G V D+VGGL+D+ + ++FIGD RI EDYLRILRFFR A YG
Sbjct: 126 TINGLSVDSDGTVHDHVGGLDDIAAKRVRFIGDPDRRIAEDYLRILRFFRIHAAYGAGEP 185
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D +G +A I+ + GL LS+ER+ +E+ KLL A+ + A+V M +GG+ + V
Sbjct: 186 DRNGHLACIRGRAGLVTLSAERVRAEMLKLLVAEGAVEAVVAMEDGGLLLALLGGVSYRG 245
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
L+ ++ AE+ E D + R + ++ + +A++ L L S +
Sbjct: 246 --PLAAMMAAERALELAPDPI-RRLAALAVSVTEDARRIAQRLRLSNAEAKELDSMGHRW 302
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + ++ Y G +L + D L V S W+ P
Sbjct: 303 WRLGGMDEATARRRLYRLGATRFRDRLMQAWSRAGLGA---DPAPWLNVASLPQRWQPPA 359
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
FPL D V GI G +G++L + W+ F L L + + +A
Sbjct: 360 FPLKAGDFVARGIAEGPALGHVLTIAEDAWLAEDFPLDSARLSAIADQTVA 410
>gi|91975779|ref|YP_568438.1| polynucleotide adenylyltransferase region [Rhodopseudomonas
palustris BisB5]
gi|91682235|gb|ABE38537.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas
palustris BisB5]
Length = 417
Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats.
Identities = 130/415 (31%), Positives = 205/415 (49%), Gaps = 8/415 (1%)
Query: 1 MVS--IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58
M + W H +L+LL+ +++ +VGGAVR++L+ L + D+DIATT LP+
Sbjct: 1 MTAAVRADAPWLHVGPAAQVLALLDGHGEEARVVGGAVRNALLKLPIGDVDIATTALPEE 60
Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
V+R K +PT I +GT+ ++ F+ITTLR D+ T GR AKV F RDW D+
Sbjct: 61 VVRRARAAGIKAVPTGIEHGTVTLVLDGHGFEITTLREDVETFGRKAKVAFGRDWVRDAQ 120
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDFTIN L G V D+VGGL D+ R ++FIGD RI EDYLRILRFFR A YG
Sbjct: 121 RRDFTINGLSVSADGVVHDHVGGLADIAARRVRFIGDPDQRIAEDYLRILRFFRIHAAYG 180
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ DG +A I+ + GL LS+ER+ E+ KL+ A ++V M +GG+ + V
Sbjct: 181 VGAPERDGYLACIRGRGGLSTLSAERMRMEMLKLMVAGGAAESVVAMADGGLLLGVLGGV 240
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ ++EAE+ D + R ++ + + ++ L L S
Sbjct: 241 IYPG--AFAAMVEAERALGLDADPVRRLGA-LAVAVTEDAKRLTQRLRLSNAESKRLDSM 297
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + + ++ Y G+ ++ + A D +++ W
Sbjct: 298 GHRWWRLARMDEATARRRLYRLGEPRFHDRMMLAWARAGR---EADPAPWRDLIALPQRW 354
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ P FPL D + G G +G++L + W+ + F + + L + + A
Sbjct: 355 RAPAFPLKAADFIARGFAEGPALGHVLTLAEDAWLAADFPVDDQRLQAIADQTAA 409
>gi|86748321|ref|YP_484817.1| polynucleotide adenylyltransferase region [Rhodopseudomonas
palustris HaA2]
gi|86571349|gb|ABD05906.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas
palustris HaA2]
Length = 418
Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats.
Identities = 130/409 (31%), Positives = 202/409 (49%), Gaps = 6/409 (1%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
W H +L+LLN +++ +VGGAVR++L+ L + D+DIATT LPD V+R
Sbjct: 8 ADAPWLHAGPAAQVLALLNHDGEEARVVGGAVRNALLKLPIGDVDIATTALPDEVVRRAR 67
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
K +PT + +GT+ ++ F++TTLR D+ T GR AKV F RDW D+ RRDFTI
Sbjct: 68 AAGIKAVPTGVEHGTVTLVLDGHGFEVTTLREDVETFGRKAKVAFGRDWLRDAQRRDFTI 127
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
N L G V DYVGGL+D+ R ++FIGD RI EDYLRILRFFR A YG
Sbjct: 128 NGLSVSPDGVVHDYVGGLDDIAARRVRFIGDPDQRIAEDYLRILRFFRIHAAYGVGPPQR 187
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
G +A I+ + GL LS+ER+ E+ KL+ A L ++ M +GG+ + V
Sbjct: 188 AGTLACIRGRAGLATLSAERMRMEMLKLMVADGALASVEAMADGGLLLAVLGGVTYPG-- 245
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ +I AEQ D + R ++ + ++++ L L S + +
Sbjct: 246 PFAAMIGAEQALGLDPDPVRRLGA-LAVAVTEDAKRLSQRLRLSNAEAKRLDSMGHRWWR 304
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
+ ++ Y G+ ++ + A D +++ W+ P FP
Sbjct: 305 LAGMDEATARRRLYRLGEPRFHDRMMLAWARAGR---QADPAPWRNLVALPQRWRPPGFP 361
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
L D + G G +G++L + W+ + F + + L + + A
Sbjct: 362 LKAADFIARGFAAGPALGHVLTLAEDAWLAADFPVEEGRLQAIADQTAA 410
>gi|92118713|ref|YP_578442.1| polynucleotide adenylyltransferase region [Nitrobacter hamburgensis
X14]
gi|91801607|gb|ABE63982.1| Polynucleotide adenylyltransferase region [Nitrobacter hamburgensis
X14]
Length = 418
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 144/416 (34%), Positives = 215/416 (51%), Gaps = 9/416 (2%)
Query: 1 MV---SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M S+ + W + +L+LL +++ +VGGAVR++LM L V +IDIATT LP+
Sbjct: 1 MTTACSLSEAGWLKSGPAVRVLALLGGNGEEARVVGGAVRNALMGLPVGEIDIATTALPE 60
Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
V+R + R K IPT I +GT+ ++ + F+ITTLR D+ T GR A+V F RDW D+
Sbjct: 61 EVIRRAAAARIKSIPTGIEHGTVTLVVDGRPFEITTLREDVETFGRKARVAFGRDWARDA 120
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTIN L G V D+VGGL+D+ R ++FIGD RI EDYLRILRFFR A Y
Sbjct: 121 ERRDFTINGLSVGSDGTVHDHVGGLDDIAARRVRFIGDPDRRIAEDYLRILRFFRIHAAY 180
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G D G +A I+ + GL LS+ER+ +E+ KLL A+ + A+V M +GG+ I
Sbjct: 181 GAGEPDRAGYLACIRGRAGLATLSAERLRAEMLKLLVAEGAVEALVAMEDGGLLLAILGG 240
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
V L+ +I AE+ D + R + ++ + +A++ L L S
Sbjct: 241 VAYRG--PLAAMIAAERALGLAPDPI-RRLAALAVSVTEDARRVAQRLRLSNAEAKQLDS 297
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
+ + ++ ++ Y G +L A D L V +
Sbjct: 298 MGHRWWRLGSMDEATARRRLYRLGAPRFRDRLMQAWARAGLGA---DPGLWLNVATLPQR 354
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
W+ P FPL +D V GI G +G++L + W+ + F L L + + +A
Sbjct: 355 WQPPAFPLKAEDFVGRGIAAGPALGHVLTIAEDAWLAADFPLDSAQLSAIADQTVA 410
>gi|304570787|ref|YP_002515788.2| poly(A) polymerase/tRNA-nucleotidyltransferase [Caulobacter
crescentus NA1000]
Length = 417
Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats.
Identities = 142/422 (33%), Positives = 206/422 (48%), Gaps = 15/422 (3%)
Query: 1 MVS--IVQHKWFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILP 56
M S I W + +++ L + VGG VR++LM V DIDIATT+ P
Sbjct: 1 MSSEMIGNAPWIALPETKAVIAALEARGYAGCARFVGGCVRNTLMGKPVDDIDIATTLTP 60
Query: 57 DRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD 116
D V+ + + IPT + +GTI + + ++ITTLR D+ TDGR A V FT+DW D
Sbjct: 61 DLVIDALEQAGLRAIPTGVDHGTITAVSGGRPYEITTLRKDVSTDGRRAVVAFTQDWNQD 120
Query: 117 SLRRDFTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDF NALYAD G+V D G+ D + F+GD RI EDYLRILRFFRF A
Sbjct: 121 AERRDFRFNALYADTDGRVYDPTGEGIRDAHEGRVVFVGDPMTRIREDYLRILRFFRFQA 180
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
YG D GL A K + ++ER E+ K+L A +P A M + I
Sbjct: 181 WYGRGEPDQKGLAACKALKGMVSGRAAERTQKELMKMLAADDPRPAFRLMAATSVLSSIL 240
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
V+ ++ + IE EQ+FE D L + D K +A++ LP +R L
Sbjct: 241 PSVKSLARFEALVGIETEQLFENDPDLRL---AALIPDDPKVAEQLAERLRLPNNVRDRL 297
Query: 296 ISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ N +S E ++ Y G + ++K+ A + T +L+
Sbjct: 298 VEAVGKNPRVVSWMSPREARRAVYGLGTRTFCDRIKLAWAGSGRDST---APQWRALLAL 354
Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
W P FPL+G++V+K G+P G VG ++ + WI+ F ED + +L A
Sbjct: 355 AETWNPPAFPLSGEEVMKAGVPKGPMVGEVMREIELWWIDQDFI---EDKFSAIERLKAV 411
Query: 415 SQ 416
+Q
Sbjct: 412 AQ 413
>gi|114569280|ref|YP_755960.1| polynucleotide adenylyltransferase region [Maricaulis maris MCS10]
gi|114339742|gb|ABI65022.1| Polynucleotide adenylyltransferase region [Maricaulis maris MCS10]
Length = 419
Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats.
Identities = 140/407 (34%), Positives = 202/407 (49%), Gaps = 4/407 (0%)
Query: 5 VQHKWFHDSDLINILSLLNKGE-DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+H W D + +++ L +S VGG VR++L+ V DIDIAT + PD+V+
Sbjct: 15 ARHGWLTDPATVRVMAALAAAGQGESRFVGGCVRNALLGEPVADIDIATQLDPDQVIAAA 74
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
K +PT ++GTI ++C + F++T+LR D+ TDGR A V FTRDW D+ RRDF
Sbjct: 75 KAAGLKPVPTGKAHGTITVVCDGQPFEVTSLRRDVATDGRRAVVSFTRDWAEDAKRRDFR 134
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+NALYAD G V D GGL D+ NR F+GD RI EDYLRILR FRF A YG D
Sbjct: 135 LNALYADADGTVFDPTGGLKDVENRRFVFVGDPEMRIREDYLRILRLFRFEAWYGRGAPD 194
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
+ A +K ++GL LS ER+W+E+ KLL A++PL A+ M G+ I SL
Sbjct: 195 EAAMAAVLKHREGLHKLSVERVWAELKKLLAAQDPLAAVTAMRESGLLDMILG--VNGSL 252
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
LS +I + + DS+LR ++ + I +MA K + + L N
Sbjct: 253 RVLSGIIAQDVEYGLAPDSMLR-FAALADGGPERIRTMAAKMKMSKAEAGRLEGAVNPVA 311
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
+ + + + L + WK+P F
Sbjct: 312 REDVRKAWSDSAAAERAIMALGARAFEDQVRLEAAGEVAPPPRDWTLLAQFAREWKEPEF 371
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
P+ G D++ G PG +G+ L K WI F+ ++E+L L K
Sbjct: 372 PVKGGDLILLGYEPGPMLGDALDELKALWIADRFEPTKEELIARLTK 418
>gi|16124663|ref|NP_419227.1| poly A polymerase family protein [Caulobacter crescentus CB15]
gi|13421569|gb|AAK22395.1| poly A polymerase family protein [Caulobacter crescentus CB15]
gi|220962524|gb|ACL93880.1| poly(A) polymerase/tRNA-nucleotidyltransferase [Caulobacter
crescentus NA1000]
Length = 413
Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats.
Identities = 140/417 (33%), Positives = 204/417 (48%), Gaps = 13/417 (3%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
I W + +++ L + VGG VR++LM V DIDIATT+ PD V+
Sbjct: 2 IGNAPWIALPETKAVIAALEARGYAGCARFVGGCVRNTLMGKPVDDIDIATTLTPDLVID 61
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ + IPT + +GTI + + ++ITTLR D+ TDGR A V FT+DW D+ RRD
Sbjct: 62 ALEQAGLRAIPTGVDHGTITAVSGGRPYEITTLRKDVSTDGRRAVVAFTQDWNQDAERRD 121
Query: 122 FTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
F NALYAD G+V D G+ D + F+GD RI EDYLRILRFFRF A YG
Sbjct: 122 FRFNALYADTDGRVYDPTGEGIRDAHEGRVVFVGDPMTRIREDYLRILRFFRFQAWYGRG 181
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
D GL A K + ++ER E+ K+L A +P A M + I V+
Sbjct: 182 EPDQKGLAACKALKGMVSGRAAERTQKELMKMLAADDPRPAFRLMAATSVLSSILPSVKS 241
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
++ + IE EQ+FE D L + D K +A++ LP +R L+
Sbjct: 242 LARFEALVGIETEQLFENDPDLRL---AALIPDDPKVAEQLAERLRLPNNVRDRLVEAVG 298
Query: 301 CNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
N +S E ++ Y G + ++K+ A + T +L+ W
Sbjct: 299 KNPRVVSWMSPREARRAVYGLGTRTFCDRIKLAWAGSGRDST---APQWRALLALAETWN 355
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
P FPL+G++V+K G+P G VG ++ + WI+ F ED + +L A +Q
Sbjct: 356 PPAFPLSGEEVMKAGVPKGPMVGEVMREIELWWIDQDFI---EDKFSAIERLKAVAQ 409
>gi|316932733|ref|YP_004107715.1| polynucleotide adenylyltransferase region [Rhodopseudomonas
palustris DX-1]
gi|315600447|gb|ADU42982.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas
palustris DX-1]
Length = 418
Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats.
Identities = 136/416 (32%), Positives = 206/416 (49%), Gaps = 9/416 (2%)
Query: 1 MVSIV---QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M + W H +L+LLN +++ +VGGAVR++L L + D+DIATT LPD
Sbjct: 1 MTDVPVRSDAPWLHTGPAARVLALLNGDGEEARVVGGAVRNALFGLPIGDVDIATTALPD 60
Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
V+R K +PT I +GT+ ++ F+ITTLR D+ T GR AKV F RDW D+
Sbjct: 61 EVVRRAKAAGIKAVPTGIEHGTVTLVLEGHGFEITTLREDVETFGRKAKVAFGRDWARDA 120
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTINAL G V DYVGGL D+ R ++FIGD RI EDYLRILRFFR A Y
Sbjct: 121 QRRDFTINALSMSADGTVHDYVGGLADIAARRVRFIGDPDQRIAEDYLRILRFFRIHAAY 180
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G + D D +A I+ + GL LS+ER+ E+ KL+ A ++V M +GG+ +
Sbjct: 181 GAGSPDRDAYLACIRGRDGLSTLSAERLRMEMLKLMVAGGAEASVVAMADGGLLLAVLGG 240
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
V + + +I AE+ + D + R ++ + +A++ L L S
Sbjct: 241 VAYLG--AFAAMIGAERALGLEADPVRRLGA-LAVAVTEDAKRLAQRLRLSNAEAKRLDS 297
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
+ + + ++ Y G+ ++ + A D +++
Sbjct: 298 MGHRWWRLAGMDEATARRRLYRLGEARFHDRMMLAWARAGRGA---DPAPWHALIALPER 354
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
W+ P FPL D + G G +G++L + W+ + F L L + + A
Sbjct: 355 WQAPAFPLKAADFLARGFAAGPALGHVLTLAEDAWLAADFPLEPAALRTIADQTAA 410
>gi|299134641|ref|ZP_07027833.1| Polynucleotide adenylyltransferase region [Afipia sp. 1NLS2]
gi|298590451|gb|EFI50654.1| Polynucleotide adenylyltransferase region [Afipia sp. 1NLS2]
Length = 422
Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats.
Identities = 129/412 (31%), Positives = 209/412 (50%), Gaps = 6/412 (1%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
+ + W LSLLN +++ IVGGAVR++L+NL V +ID+ATT LP+ V+R
Sbjct: 9 TATIMAAWLTSGPAARALSLLNANGEEARIVGGAVRNALLNLPVGEIDVATTALPEEVVR 68
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
R K +PT + +GT+ ++ ++TTLR D+ T GR AKV F RDW D+ RRD
Sbjct: 69 RARAARIKCVPTGLEHGTVTLVIEGTPIEVTTLREDIETFGRKAKVAFGRDWVRDAERRD 128
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FTIN L G V D+VGGL D+ R ++FIGD RI ED+LRILRFFR A YG+
Sbjct: 129 FTINGLSLSADGIVHDHVGGLADIEARRVRFIGDPARRISEDFLRILRFFRIHAAYGQGE 188
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
D + A I A+ GL LS+ER+ E+ KL+ AK +A++ M +GG+ I V
Sbjct: 189 PDRAAMEACIAARDGLASLSAERLRMEMLKLVVAKGAADALIEMEDGGLLGRITAGVSYH 248
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+ ++EAE++ + D++ R ++ + ++ + L L S +
Sbjct: 249 G--PFANMVEAERMLGFTADAIRRLGA-LTVATPEDAKRLSVRLRLSNAETKRLDSMGHR 305
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + + ++ Y G ++ + A + ++ + W P
Sbjct: 306 WWRMREMDEEIARRRVYRLGPDRYTERVMLAWARAGQDFA---APRWRELATLTRRWSAP 362
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+FPL D + G+ G +G++L + W+ ++F L + + + +
Sbjct: 363 VFPLKAADFIARGLKEGPALGHVLTLAEDAWLAANFPLDAASVAAIAEQTLE 414
>gi|154252684|ref|YP_001413508.1| polynucleotide adenylyltransferase region [Parvibaculum
lavamentivorans DS-1]
gi|154156634|gb|ABS63851.1| Polynucleotide adenylyltransferase region [Parvibaculum
lavamentivorans DS-1]
Length = 417
Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats.
Identities = 148/419 (35%), Positives = 224/419 (53%), Gaps = 8/419 (1%)
Query: 1 MV---SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M S+ + W ++ D ++ L + VGGAVR+ LM V DIDIATT PD
Sbjct: 1 MTAENSLARAAWLNEPDTRAVMEALAAKGGTARFVGGAVRNQLMGEPVSDIDIATTETPD 60
Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
+ KV+PT I +GTI + ++F+ITTLR D+ TDGR A V FT DW AD+
Sbjct: 61 AAKALLEAKGIKVVPTGIDHGTITAVTPTRHFEITTLRVDVKTDGRRADVAFTEDWTADA 120
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NALY D G + D +GGL DL+ R ++FIGDAH RI EDYLRILRFFRF A Y
Sbjct: 121 GRRDFTMNALYGDADGTIHDPLGGLADLKARRVRFIGDAHERIREDYLRILRFFRFHAWY 180
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G+ D GL A+ + ++GL+ LS ER+ E+ K + A N A M GI + + +
Sbjct: 181 GKGEPDEAGLRAAAEEREGLRQLSGERVRDELFKTITADNAAAAFRQMAAAGILQIVLPE 240
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+ + IEA+Q+F K D +LR ++ DK + ++A + L R LI+
Sbjct: 241 ASRLDRFEKLVEIEAQQLFVQKPDPVLRLGAML-DLDKAGVEALAARLKLSNRDRDRLIA 299
Query: 298 FFNCNFNQKTL-SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
S+ E+++ Y G ++ ++ + A + +L+
Sbjct: 300 MLTDTTKIVCYLSMREVRRALYQMGLQLFKDRVSLGWAEDRRG---HNAFQWRAMLAMAD 356
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
W+KP+ PLTG+ + G+P G ++G I ++ WI+S F + + L+ ++ ++
Sbjct: 357 SWEKPVLPLTGEMIKAAGVPEGPQIGRIRDEVEEWWIDSDFIDDEFSIIERLKAIVQAT 415
>gi|319406819|emb|CBI80452.1| poly(A) polymerase [Bartonella sp. 1-1C]
Length = 417
Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats.
Identities = 152/410 (37%), Positives = 237/410 (57%), Gaps = 6/410 (1%)
Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65
Q W S++ +L +L+ +++ +VGGAVR+ L+ + DIDIATT LP ++++ +
Sbjct: 9 QAAWLQSSNIQTLLRVLSLDGEEARVVGGAVRNQLLKQPISDIDIATTCLPQQIIKRVEE 68
Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+K IPT I++GT+ ++ +++TTLRSD+ TDGR+A+VVF+RDWK D+ RRDFTIN
Sbjct: 69 IGFKAIPTGINFGTVTVVGESCSYEVTTLRSDIQTDGRHAEVVFSRDWKKDAERRDFTIN 128
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
ALY + G++ D VGGLND+ RT++FIG A RI EDYLRILRFFRFFA YG D++
Sbjct: 129 ALYCNAAGEIYDEVGGLNDIATRTVRFIGVAEQRICEDYLRILRFFRFFAWYGIGRPDAE 188
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
GL A K GL LS ERIW E+ KLL A +P A++ M GI I + + +D
Sbjct: 189 GLKACTHLKHGLHKLSPERIWGEMKKLLTALDPTRALLWMRQSGILTFILPETERWGIDA 248
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ +I+ EQ F+W++D LR LI D + MA++ L + + L +
Sbjct: 249 IHSLIKTEQAFDWEVDPFLRLESLIP-PDVMRLHDMARRLHLSNKEKIRLKEWAELELIN 307
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDIIHWKK 360
+++L Y YG + ++ +L + LA ++ Q +++ W+
Sbjct: 308 YDCPDILMQRLIYFYGRQPVLDQLALSLAAARDHTLKDSKAVQKEECYIRLYQLARKWQI 367
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
P FP++G D+++ G+ GK +G L + W+ S F + + L + +
Sbjct: 368 PTFPISGKDLLERGLVKGKFLGKKLKELESLWVESGFLIDRNKLLEKIEQ 417
>gi|146339019|ref|YP_001204067.1| putative poly(A) polymerase [Bradyrhizobium sp. ORS278]
gi|146191825|emb|CAL75830.1| putative poly(A) polymerase [Bradyrhizobium sp. ORS278]
Length = 417
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 129/415 (31%), Positives = 203/415 (48%), Gaps = 8/415 (1%)
Query: 1 MVS--IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58
M ++ W +L+LLN +++ +VGGAVR++L+ +++ DIDIATT LP
Sbjct: 1 MTGARVLSAPWLSSGPAARVLALLNCDGEEARVVGGAVRNALLGVAIGDIDIATTALPPE 60
Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
V+R K +PT I +GTI ++ F++TTLR D T GR AKV F RDW D+
Sbjct: 61 VIRRAKAASIKSVPTGIDHGTITLVLDGHPFEVTTLREDTETFGRKAKVAFGRDWVGDAH 120
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDFTINAL G V D+VGGL D+ R ++FIGD RI EDYLRILRFFR + +G
Sbjct: 121 RRDFTINALSVGADGVVHDHVGGLADIEARRVRFIGDPSQRIAEDYLRILRFFRIHSAFG 180
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
D +G +A I + GL LS+ER+ E+ KLL + + A+ M +GG+ I V
Sbjct: 181 HGEPDREGYLACIAGRGGLATLSAERVRMEMLKLLVTEGAVGAVTAMADGGLLTSILGGV 240
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ + +I+ E+ + R + ++ + + + L L
Sbjct: 241 AYVG--PFAAMIDIERELSLPPSPV-RRLAALAVAVTEDARRLGARLKLSNAETKALDGM 297
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + + ++L Y G+ V +L + A +D ++ +
Sbjct: 298 GHRWWRFASADEARGRRLLYRLGETVYRDRLMLGWARSGC---RRDAQHWRELALLPQRF 354
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
P PL D + G+ G +G++L + W+ + F L + L + + A
Sbjct: 355 TPPKLPLKAADFIARGVAEGPLLGHVLTLAEDAWLAADFPLDEASLTAIADQAAA 409
>gi|319403812|emb|CBI77396.1| poly(A) polymerase [Bartonella rochalimae ATCC BAA-1498]
Length = 417
Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats.
Identities = 151/408 (37%), Positives = 237/408 (58%), Gaps = 6/408 (1%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
W S++ +L +L+ +++ +VGGAVR+ L+ + DIDIATT LP ++++ +
Sbjct: 11 AWLQSSNIQTLLRVLSMDGEEARVVGGAVRNQLLQQPISDIDIATTCLPQQIIKRVEEVG 70
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+K IPT I++GT+ ++ +++TTLRSD+ TDGR+A+VVF+RDWK D+ RRDFTINAL
Sbjct: 71 FKAIPTGINFGTVTVVGESCSYEVTTLRSDIQTDGRHAEVVFSRDWKKDAERRDFTINAL 130
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
Y + G++ D VGGLND+ RT++FIG A RI EDYLRILRFFRFFA YG D++GL
Sbjct: 131 YCNAAGEIYDEVGGLNDIATRTVRFIGVAEQRICEDYLRILRFFRFFAWYGIGRPDAEGL 190
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
A + K GL LS ERIW E+ KLL A +P A++ M GI I + + +D +
Sbjct: 191 KACTRLKHGLHKLSPERIWGEMKKLLTALDPTRALLWMRQSGILTFILPETERWGIDAIH 250
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+I+ EQ F+W++D LR LI D + MA++ L + + L +
Sbjct: 251 SLIKTEQAFDWEVDPFLRLESLIP-PDVMRLHDMARRLHLSNKEKIRLKEWAELELINYD 309
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDIIHWKKPL 362
+++L Y YG + ++ +L + LA ++ Q +++ W+ P
Sbjct: 310 CPDILMQRLIYFYGRQPVLDQLALSLAAARDHTLKDSKAVQKEECYIRLYQLARKWQIPT 369
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
FP++G D+++ G+ GK +G L + W+ S F + + L + +
Sbjct: 370 FPISGKDLLERGLVKGKFLGKKLKELESLWVESGFLIDRNKLLEKIEQ 417
>gi|209886120|ref|YP_002289977.1| polynucleotide adenylyltransferase region [Oligotropha
carboxidovorans OM5]
gi|209874316|gb|ACI94112.1| polynucleotide adenylyltransferase region [Oligotropha
carboxidovorans OM5]
Length = 422
Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats.
Identities = 130/410 (31%), Positives = 209/410 (50%), Gaps = 6/410 (1%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
+++ W +L+LLN +++ +VGGAVR++L+NL V +IDIATT LP+ V+R
Sbjct: 10 AVIAGAWLTSGPAARVLALLNTEGEEARVVGGAVRNALLNLPVGEIDIATTALPEEVVRR 69
Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
R K +PT + +GT+ ++ ++TTLR D+ T GR AKV F RDW D+ RRDF
Sbjct: 70 ARVARIKCVPTGLEHGTVTLVIEGTPVEVTTLREDIETFGRKAKVAFGRDWARDAERRDF 129
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
TIN L G V DYVGGL D+ R ++FIGD RI ED+LRILRFFR A YGE
Sbjct: 130 TINGLSLSTDGTVHDYVGGLPDIAARRVRFIGDPARRIGEDFLRILRFFRIHAAYGEGEP 189
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D A I A+ GL +LS+ER+ E+ KL+ A+ +A+V M + G+ I V
Sbjct: 190 DQAARDACIAARDGLDLLSAERLRMEMLKLVVARGAADALVAMDDAGLLGRITAGVSYHG 249
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ ++EAE++ + D + R ++ + ++ + L L S +
Sbjct: 250 --PFAGMVEAERMLGFVADPIRRLGA-LTVATPEDAKRLSTRLRLSNAETKRLDSMGHRW 306
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + + ++ Y G ++ + A + + + + W P+
Sbjct: 307 WRMRGMDEEVARRRVYRLGADRYTERVMLAWARSGQDFS---APRWRDLATLTRRWTAPV 363
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
FPL D + G+ G +G++L + W+ ++F L L + + +
Sbjct: 364 FPLKAADFIARGLKEGPALGHVLTLAEDAWLAANFPLDAASLATIADQTL 413
>gi|304393674|ref|ZP_07375602.1| tRNA-nucleotidyltransferase 1 [Ahrensia sp. R2A130]
gi|303294681|gb|EFL89053.1| tRNA-nucleotidyltransferase 1 [Ahrensia sp. R2A130]
Length = 403
Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats.
Identities = 144/406 (35%), Positives = 234/406 (57%), Gaps = 7/406 (1%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M + W H L +L+LLN GE ++ I GGAVR+SL++ + D+D+ATT++P V+
Sbjct: 1 MAEHIDQPWLHRPQLQALLALLNDGEGEAKIAGGAVRNSLLDQPIADVDVATTLVPSEVV 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+K +PT I +GT+ I +++TTLR+D+ TDGR+A VVF DW+AD+ RR
Sbjct: 61 ERLKSAGHKSVPTGIDHGTVTAIIDGDAYEVTTLRADVETDGRHATVVFGTDWEADARRR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
D T+NALY D G V D +GG+ D+ + FI DA RI EDYLRILRFFRFFA YG+
Sbjct: 121 DLTMNALYLDADGTVFDPLGGMQDVLAARVVFIDDATQRIREDYLRILRFFRFFAWYGKF 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
D+DGL A + K GL+ LS+ER+W E++K+L A +P+ A++ M G+ +I + +
Sbjct: 181 RPDADGLRACAREKDGLEGLSAERVWQELSKMLAAPDPVRAVLWMRQTGVLSKILPESEN 240
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+D + +IE E+ +W+ D++LR + ++ + + + S ++ LP +R L+++
Sbjct: 241 WGIDGIHPLIETEKERKWEPDAVLRLMAILPPME-ERVASATERLKLPNSVRDRLLAWAQ 299
Query: 301 CNFNQKTLSIPEIKKLFYL-YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ Y D+ + +L++ +A + D + L + W+
Sbjct: 300 LELPAAKTKQEAFARFLYRTNNDQAVTDRLRLAIA-----TSDADAKKRRRQLKWLKRWQ 354
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+P+ P+ G D++ G+ PG + L ++ WI+S F LS E+L
Sbjct: 355 RPILPVRGADLIAAGMEPGPAISERLSKMEERWIDSDFALSSEELL 400
>gi|295687827|ref|YP_003591520.1| Polynucleotide adenylyltransferase region [Caulobacter segnis ATCC
21756]
gi|295429730|gb|ADG08902.1| Polynucleotide adenylyltransferase region [Caulobacter segnis ATCC
21756]
Length = 416
Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats.
Identities = 138/418 (33%), Positives = 200/418 (47%), Gaps = 12/418 (2%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59
VSI W S +++ L + VGG VR++LM V DIDIATT+ PD+
Sbjct: 4 VSIGAPPWMAASQTRAVIAALEAKGGVGCARFVGGCVRNTLMGKPVDDIDIATTLTPDQT 63
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + + +PT + +GT+ + + F++TTLR D+ TDGR A V FT DW D+ R
Sbjct: 64 IEAIEQAGLRAVPTGVEHGTVTALSGGRPFEVTTLRRDVATDGRRAVVAFTHDWGEDAQR 123
Query: 120 RDFTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDF NALYAD +G V D V G+ D R + F+GD RI EDYLRILRFFRF A YG
Sbjct: 124 RDFRFNALYADAEGTVYDPVGQGVEDARAGRVVFVGDPMTRIREDYLRILRFFRFQAWYG 183
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
D++ L A K L ++ERI E+ K L A +P A M G+ I V
Sbjct: 184 RLEPDAEALAACAALKDMLLGGTAERIQKELMKTLAADDPRPAFRLMAATGVLAAILPTV 243
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ SL + ++ E ++ D +LR L + L+ + S R
Sbjct: 244 E--SLARFDALVAIETEQLFETDPVLRLAALTPDDNGAKALAERLRLSNADRDRIVEAK- 300
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+S E ++ Y G ++K+ A T +L+ W
Sbjct: 301 TPGPTIVSWMSPREARRAIYALGSSAFRDQVKLAWAGAERAST---ASQWRALLALAETW 357
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
P PLTG++++K G+P G VG +L + WI+ F ED ++ +L A +Q
Sbjct: 358 TPPTLPLTGEEIMKAGVPKGPMVGKVLREVELWWIDQDFI---EDKFSVIERLKAVAQ 412
>gi|167644663|ref|YP_001682326.1| polynucleotide adenylyltransferase region [Caulobacter sp. K31]
gi|167347093|gb|ABZ69828.1| Polynucleotide adenylyltransferase region [Caulobacter sp. K31]
Length = 417
Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats.
Identities = 137/418 (32%), Positives = 208/418 (49%), Gaps = 13/418 (3%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
+I W +++ L + VGG VR++LM + DIDIATT+ PD+V+
Sbjct: 5 TIGVAPWMALPATQAVIAALEARGFPGCARFVGGCVRNTLMGKPIDDIDIATTLTPDQVI 64
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ + IPT + +GT+ + + ++ITTLR D+ TDGR A V FT+DW D+ RR
Sbjct: 65 EALGEAGLRAIPTGVDHGTVTALSGGRPYEITTLRRDVETDGRRAVVSFTQDWDQDAERR 124
Query: 121 DFTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DF NALY D QG++ D G+ND R + F+GD RI EDYLRILRFFRF A YG+
Sbjct: 125 DFRFNALYVDLQGRLYDPTGEGVNDAREGRVVFVGDPMTRIREDYLRILRFFRFHAWYGK 184
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
D L A K ++ ++ER E+ KLL A++P ++ M + I V+
Sbjct: 185 GEADQKALAACKALKGMVEGRAAERTQKELLKLLAAEDPRPSLRLMAATSVLSSILPFVK 244
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
++ + IE EQ+FE + L + D K MA++ L ++ L+
Sbjct: 245 SLARFEGLMAIETEQLFENDPELRL---AALIPDDPKIAEQMAERLRLSNALKERLVEAV 301
Query: 300 NCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ +S E ++ Y G K ++K+ A T +L + W
Sbjct: 302 GKSPRIVSWMSPRECRRAVYALGLKTFSDRVKLAWAGAGRTATTPQWRGLLAL---GESW 358
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
P FPLTG+D++K G+P G VG ++ + WI+ F ED + +L A +Q
Sbjct: 359 SPPAFPLTGEDILKAGVPKGPMVGEVMREVEIWWIDQDFI---EDKFSAIERLKAVAQ 413
>gi|328542784|ref|YP_004302893.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[polymorphum gilvum SL003B-26A1]
gi|326412530|gb|ADZ69593.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Polymorphum gilvum SL003B-26A1]
Length = 410
Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats.
Identities = 126/411 (30%), Positives = 205/411 (49%), Gaps = 9/411 (2%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M S+ W + + L + D++ VGGAVR++L+ + V D+DIATT P VM
Sbjct: 1 MRSLSDAPWLTAQSIQQVFEALEQDGDEARAVGGAVRNTLLGVPVADVDIATTAEPATVM 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ K +PT I +GT+ ++ +++TTLR D+ T GR+A V F RDW D+ RR
Sbjct: 61 KRALAHGLKPVPTGIDHGTVTVVSSGIAYEVTTLREDVETFGRHAVVRFGRDWSHDARRR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
DFT+NALY D+ G++ D +GG D R ++FIGDA RI EDYLRILRFFR A YG
Sbjct: 121 DFTMNALYVDRHGRIDDPIGGYEDCLARRVRFIGDAAERIREDYLRILRFFRIHAAYGVG 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
D DGL A+I+A+ GL+ LS+ER+ E+ +L+ I M + GI + + V
Sbjct: 181 QPDPDGLHAAIRARDGLRRLSAERVGMEVKRLVTTAGAPGVIRLMESCGILEIVTGGVGR 240
Query: 241 I-SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ + L ++ + L+ +S ++ + + +F L R ++
Sbjct: 241 LVDFEALRRLDRVAPEAQEAPVCLVA----LSGFVEEDLDRLVSRFRLSNAERERMMRAH 296
Query: 300 NCNFNQKTLSIPEIKK-LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + + + G + I + A +L +W
Sbjct: 297 RAAAQLAHGADERGIRGVLFTDGRQPAIDGALLAWARSGG---EAYDETWKSLLGLARNW 353
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
P+FP+ G D++K G+ G +G +L + +++S + +++EDL L
Sbjct: 354 PIPMFPVGGRDLLKQGVAAGPALGAVLARLRAAFMDSDYTMTREDLLRLAE 404
>gi|23016115|ref|ZP_00055875.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase
[Magnetospirillum magnetotacticum MS-1]
Length = 435
Score = 230 bits (585), Expect = 4e-58, Method: Composition-based stats.
Identities = 107/417 (25%), Positives = 192/417 (46%), Gaps = 6/417 (1%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ W ++ +L+ L + VGG VRD+L+ ++DIDIAT P+RV+ +
Sbjct: 17 LGPQDWMDAAETRAVLAALQADGAQVRFVGGCVRDALLKRPIKDIDIATPDPPERVLALL 76
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
IPT I +GT+ + K +++ITTLR D+ + GR+A++ +T DW+ D+ RRDFT
Sbjct: 77 DDAGIHAIPTGIDHGTVTAVIGKAHYEITTLRVDVESFGRHARIQYTDDWRVDASRRDFT 136
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+NAL AD +G V D G+ D+ ++F+G+ RI ED LR+LR+FRF AHYG
Sbjct: 137 MNALSADPEGNVYDPFDGIADMAAGRVRFVGEPEKRIEEDALRLLRYFRFHAHYGRGTAM 196
Query: 184 SDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ + + G K LS ER+ E+ +LL A +P +++ M++ GI + + +E
Sbjct: 197 EARALHACRRMAGRLKNLSGERVAGELVRLLLADDPTPSLLVMHSRGILAHVLPEAKEFG 256
Query: 243 LDQLSQVIEA--EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+ +E E + D++ R LI+ ++ + + +
Sbjct: 257 RLRTLAWLERRGLARAEIRPDAMRRLAALIATDRNGAMALGERLKLSGVQAKRVAAMAAP 316
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY---NNLTHQDTCFILQVLSDIIH 357
T+ ++ G + A ++ + +L
Sbjct: 317 RVTVDFTMDAQAARRALRKVGSDEFRDLTLVAWAGRRSLEARPDAAESERWIALLDAARD 376
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
W P+ G D+++ G+P G ++G +L + W ++ + L+ +
Sbjct: 377 WVPVELPVKGRDLMERGVPHGPRIGGLLAALEDWWEERDYRPDRNQCLEKLKDFVND 433
>gi|90422439|ref|YP_530809.1| polynucleotide adenylyltransferase region [Rhodopseudomonas
palustris BisB18]
gi|90104453|gb|ABD86490.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas
palustris BisB18]
Length = 417
Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats.
Identities = 138/411 (33%), Positives = 209/411 (50%), Gaps = 7/411 (1%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
+ W + +L+LLN ++ +VGGAVR+ L+ L DIDIATT LPD VMR
Sbjct: 6 RLEDAPW-NSGAAARVLALLNGDGAEARVVGGAVRNLLIGLPTGDIDIATTALPDEVMRR 64
Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
+ K +PT I +GT+ ++ + F+ITTLR D+ T GR AKV F DW D+ RRDF
Sbjct: 65 AQQAGIKSVPTGIEHGTVTLVVDGEPFEITTLREDVETFGRKAKVAFGEDWAVDAQRRDF 124
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
T+NAL G + DYVGGL+D+ R ++FIGD RI EDYLRILRFFR A YGE
Sbjct: 125 TMNALSVSLDGTLHDYVGGLDDVEARRVRFIGDPDQRIAEDYLRILRFFRIHAAYGEGAP 184
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D DG +A I+ + GL LS+ER+ E+ KL+ A A+ M GG+ +F V
Sbjct: 185 DRDGSLACIRGRDGLASLSAERMRMEMLKLMVAPGACAAVAAMGEGGLLLRVFGGVAFHG 244
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ +I AE+ + D++ R + + + ++ L L S +
Sbjct: 245 --PFAAMIAAERRLDLAPDAIRRLGA-LGVAVTEDARRLTQRLRLSNVECKRLDSMGHRW 301
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + + K+ Y G ++ + A + D L +++ W+ P
Sbjct: 302 WRLRGMDQATAKRRLYRLGQARYHDRMMLAWARAGQDA---DPTPWLDLVTLPQRWQAPA 358
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
FPL D + G+ G +G+I+ + W+ S F L + L+ + + +A
Sbjct: 359 FPLKAADFIARGVAQGPALGHIIALAEDAWLASDFALDEAALNGIADQTVA 409
>gi|83859591|ref|ZP_00953111.1| probable poly(A) polymerase [Oceanicaulis alexandrii HTCC2633]
gi|83851950|gb|EAP89804.1| probable poly(A) polymerase [Oceanicaulis alexandrii HTCC2633]
Length = 408
Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats.
Identities = 129/413 (31%), Positives = 207/413 (50%), Gaps = 18/413 (4%)
Query: 6 QHKWFHDSDLINILSLLNKGE-DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+H + D +L ++ GE D++ IVGGAVR++L V+D+DIAT + P +
Sbjct: 7 EHAFLSAPDTRAVLDAISPGETDRARIVGGAVRNALQGAPVEDVDIATQLTPQETLDALK 66
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
K IPT + +GTI + + K F+ITTLR D+ TDGR A V FT DW D+ RRDF +
Sbjct: 67 AAGIKAIPTGLDHGTITAVIKGKPFEITTLRKDVSTDGRRAVVAFTTDWAIDASRRDFRL 126
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
NA+YA + G + D G+ D + FIG+A R+ ED LRILRF+RF A YG +D
Sbjct: 127 NAIYARRDGSLFDPYDGVADALAHRVVFIGEADERLAEDVLRILRFYRFNAWYG-SALDP 185
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+G A ++A GLK L+ ER+W E+ LL A +P + M G +F+ ++ + +++L
Sbjct: 186 EGHAACVRAAPGLKALARERVWKELKTLLAAPDPGPVVKAMQEGHVFEPVWPERLDLNL- 244
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
L +I A++ D+L+R + D ++ S+ + LI+ +
Sbjct: 245 -LLSIINADRGKGRAPDTLIR-AAALCGGDVTTVRSLGHQMKASNAETDRLIAMCAPAAD 302
Query: 305 -----QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ ++ Y G + ++++ A HW+
Sbjct: 303 GADSVRPGAEARARRRALYTLGAQTFSDRMRLAEARGEGEADADLDAA--------AHWR 354
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
KP P+TG D++ G PG ++G ++ + WI+S F L +E L +
Sbjct: 355 KPDLPVTGRDLIALGFEPGPQLGAVMKQLEARWIDSDFNLDRETLLARAAEAK 407
>gi|197106337|ref|YP_002131714.1| tRNA nucleotidyltransferase/poly(A) polymerase [Phenylobacterium
zucineum HLK1]
gi|196479757|gb|ACG79285.1| tRNA nucleotidyltransferase/poly(A) polymerase [Phenylobacterium
zucineum HLK1]
Length = 416
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 131/421 (31%), Positives = 209/421 (49%), Gaps = 14/421 (3%)
Query: 1 MVSIVQHK-WFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M + W + + ++ L + VGG VR++L+ V D+DIAT + PD
Sbjct: 1 MSDTLGQPAWMTAPEAVAVMDALEAAGGADCARFVGGCVRNTLIGAPVDDVDIATRLTPD 60
Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
V + + +PT I +GT+ + + ++ITTLR D+ TDGR A V FT DW D+
Sbjct: 61 EVTAALQAAKIRPVPTGIDHGTVTAVANHRPYEITTLRRDVSTDGRRATVAFTDDWMEDA 120
Query: 118 LRRDFTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFT+N+LYA + G + D G+ D + I F+G+ R+ EDYLRILRFFRF+A
Sbjct: 121 DRRDFTLNSLYARRDGTIFDPTGHGVADAKAGRIVFMGEPAQRLAEDYLRILRFFRFYAW 180
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
YG+ D+ + A AK ++ L++ERI E+ KLL A +P A+ M G+ I
Sbjct: 181 YGKGEPDAAAVAACAAAKDNIQSLAAERISKELLKLLAADDPRAAVRLMDGAGVLPLILG 240
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ L++ ++ E ++ +++LR L+ D+ + +A++ L R ++
Sbjct: 241 TAPD--LERFEGLVAIESEQLFETEAVLRLAALLPA-DQLAAAKLAERLRLSNADRDRIV 297
Query: 297 SFFNCNFNQKTL-SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
+ + K+ S EI++ Y G + K+ A + ++ +
Sbjct: 298 AALATSPALKSWMSPREIRRAVYREGQAAFRDRAKLAWARAPESAAASQWRGMIAL---A 354
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
W P FPLTGDDV+K G P G VG +L + WI+ F + + KL A
Sbjct: 355 EGWSPPAFPLTGDDVMKAGAPKGPMVGQVLREVEDWWIDHDFLDDK---LSAIEKLKAVV 411
Query: 416 Q 416
Q
Sbjct: 412 Q 412
>gi|307295583|ref|ZP_07575419.1| Polynucleotide adenylyltransferase region [Sphingobium
chlorophenolicum L-1]
gi|306878622|gb|EFN09842.1| Polynucleotide adenylyltransferase region [Sphingobium
chlorophenolicum L-1]
Length = 402
Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats.
Identities = 130/417 (31%), Positives = 196/417 (47%), Gaps = 20/417 (4%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M S+ W H L +L L + VGGAVRD L+ L V D+DIAT P VM
Sbjct: 1 MTSLPDADWRHRPGLDALLKALGAEQGLVRFVGGAVRDGLLGLPVNDLDIATVTEPQGVM 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
K +PT I +GTI + +ITTLR D+ TDGR A + +T DW+ D+ RR
Sbjct: 61 DRLKAAGIKAVPTGIDHGTITAVIHGWPVEITTLRRDVSTDGRRATIAYTDDWREDAARR 120
Query: 121 DFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALYA +V D+ GG+ DL ++FIGDA RI ED+LRILR+FRF A +G
Sbjct: 121 DFTINALYADPITHEVTDFFGGVADLNAHRVRFIGDADARIAEDHLRILRYFRFLARFGH 180
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
D A A L LS ERI E+ KLL PL ++ M GGI + + ++
Sbjct: 181 DEPDPQAYAACRAAANSLMALSRERIADELLKLLALPRPLASLRLMVEGGILRPVIPEID 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
L +LS +I+ E + ++ R L+ D ++ + + L + R +++
Sbjct: 241 GNGLARLSTLIDREAASNTALSAVRRLSALLP-PDPRTADQVGARLKLSNKARKRMMTAL 299
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ Q + G + I ++ I D L ++ + W
Sbjct: 300 EGSGTQAPPRTLA-----FRIGVEGAIDRILI------------DPSAPLDGVAMLTDWT 342
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
P P++G ++ G+ PG V L ++ W+ F + + + + ++ Q
Sbjct: 343 PPRLPISGGALIARGLQPGPDVARALAQVQEIWVAEGFP-DEARVAEIADQTVSKFQ 398
>gi|224066641|ref|XP_002186976.1| PREDICTED: similar to tRNA nucleotidyl transferase, CCA-adding, 1
[Taeniopygia guttata]
Length = 517
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 125/405 (30%), Positives = 209/405 (51%), Gaps = 14/405 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L ++ QDID ATT P + +F+ +
Sbjct: 124 LFTPGLRSVAELFEKKNYELRIAGGAVRDLLSGVTPQDIDFATTATPAEMKEMFTAAGVR 183
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D++TDGR+A+V FT DW D+ RRD T+N+++
Sbjct: 184 LINNKGEKHGTITARLHEQNFEITTLRIDVVTDGRHAEVEFTTDWHKDAERRDLTVNSMF 243
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDG 186
G + D+ G DL N+ I+F+G A RI EDYLRILR+FRF+ EK + + +
Sbjct: 244 LGLDGTLYDFFNGYEDLINKKIRFVGKAAERIQEDYLRILRYFRFYGRIAEKPGDHEPNT 303
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + + I MY I + I L + + +L++
Sbjct: 304 LQAIKENAKGLAGISGERIWVELKKILLGNHVNHLIQLMYELDIAQYIGLPL-DGNLEEF 362
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++V + Q K ++L + + ++ + + +E + + ++
Sbjct: 363 ARVSKNIQNLSPKPMTVLTSLFKGKDD----VTNLDLRLKISKEEKNLGLFLIKH---RQ 415
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L+ + Y D +M ++ + + L +Q Q+L ++ W P FP++
Sbjct: 416 ELTKGPGPEPLRPYQDFLMDSREANTNSKIFELLKYQGEE---QLLKEMQEWTVPSFPVS 472
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
G D+ K G+ GK++G L + EW S + + +E+L L+KL
Sbjct: 473 GHDLRKMGMSSGKEIGTALQQLRDEWKKSGYHMDKEELLSCLKKL 517
>gi|115522969|ref|YP_779880.1| polynucleotide adenylyltransferase region [Rhodopseudomonas
palustris BisA53]
gi|115516916|gb|ABJ04900.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas
palustris BisA53]
Length = 418
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 132/410 (32%), Positives = 206/410 (50%), Gaps = 6/410 (1%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ W L+LLN +++ ++GGAVR++L+ ++ D+DIATT PD V R
Sbjct: 7 LRDAPWLRAGPAARALALLNGDGEEARVIGGAVRNALLGIATGDVDIATTARPDEVTRRA 66
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
R K +PT I +GT+ ++ F+ITTLR D+ T GR AKV F RDW D+ RRDFT
Sbjct: 67 QVARIKCVPTGIEHGTVTLVIEGTPFEITTLREDVETFGRKAKVEFGRDWVRDAQRRDFT 126
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
IN L G V D+VGGL D+ R ++FIGD RI EDYLRILRFFR A YG+ +D
Sbjct: 127 INGLSVSADGTVHDHVGGLEDIAARRVRFIGDPDRRIAEDYLRILRFFRIHAAYGQGAVD 186
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
+ +A I+ + GL LS+ERI E+ KL+ + L A + M + G+ + V
Sbjct: 187 REAYLACIRGRDGLATLSAERIRMEMLKLMVTREALGAAMAMADAGLLLRVLGGVSYHG- 245
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
L+ +I AE+ + D++ R + + ++++ L L S + +
Sbjct: 246 -PLAAMIAAERALGLEPDAVRRLGA-LGVAVTEDARRLSQRLRLSNAETKRLDSMGHRWW 303
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
+ K+ Y G ++ + +A + T Q+++ W+ P F
Sbjct: 304 RLPGMDEATAKRRLYRLGAPRYHDRMMLAIARAGGDAT---AVPWRQLIALPQRWQAPAF 360
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
PL D + G+ G +G+I+ + W+ S F L L + + +A
Sbjct: 361 PLKAADFIARGVAQGPALGHIIALAEDAWLASDFALDPPTLSAIADQTVA 410
>gi|298292458|ref|YP_003694397.1| polynucleotide adenylyltransferase region [Starkeya novella DSM
506]
gi|296928969|gb|ADH89778.1| Polynucleotide adenylyltransferase region [Starkeya novella DSM
506]
Length = 408
Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats.
Identities = 131/413 (31%), Positives = 204/413 (49%), Gaps = 12/413 (2%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRV 59
M ++ L +L+ L+ +++ IVGGAVRD L+ V+ DIDIATT P+ V
Sbjct: 6 MNPLLDG----RPGLARVLAALDGEGEEARIVGGAVRDWLIGRGVRFDIDIATTATPEEV 61
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
R K +PT + +GT+ +I + +++TTLR D+ TDGR A+VVF R+W D+ R
Sbjct: 62 TRRALAAGLKAVPTGVEHGTVTVIAEGEPYEVTTLREDVETDGRRARVVFGRNWAHDAQR 121
Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
RDFT+NALY + G++ID VGG D R ++FIGDA RI EDYLRILR FRF A YG+
Sbjct: 122 RDFTMNALYLTRAGELIDLVGGEADARAGRVRFIGDADVRIREDYLRILRLFRFHAAYGK 181
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+D D L A+++ ++GL LS ER+ +E+ KLL A + M G+ + +
Sbjct: 182 GALDEDALAAAVRNREGLDRLSRERVRAEMMKLLVAPRAAETLAQMEAAGLLEPVLGRAG 241
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ ++ E E D++ R ++ + ++ ++ + L L +
Sbjct: 242 DA--RTFVRLSEVEASLAMVPDAVRRLGA-LAVRSEEDAEALREGLRLSNAEATRLAALA 298
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
K Y G + + I A +L + + S W
Sbjct: 299 GPAPTPGMC-EKGQKAFLYRMGREAFQDRALIAFAHSGASL---EDEGWRALASLAAGWP 354
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
P+FPL D + GI PG +G L ++ WI + F + DL + + +
Sbjct: 355 IPVFPLKAADFIARGIQPGPALGAALKRAEEAWIEAGFPMGAGDLERIAGEAV 407
>gi|83313257|ref|YP_423521.1| tRNA nucleotidyltransferase/poly(A) polymerase [Magnetospirillum
magneticum AMB-1]
gi|82948098|dbj|BAE52962.1| tRNA nucleotidyltransferase/poly(A) polymerase [Magnetospirillum
magneticum AMB-1]
Length = 435
Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats.
Identities = 114/417 (27%), Positives = 205/417 (49%), Gaps = 6/417 (1%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ W ++ +++ L + VGG VRD+L+ ++D+DIAT P+RV+ +
Sbjct: 17 LGPQDWMDAAETRAVVAALQAEGARVRFVGGCVRDALLKRPIKDVDIATPDPPERVLALL 76
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
IPT I +GT+ + K +++ITTLR D+ + GR+A++ +T DW+AD+ RRDFT
Sbjct: 77 DDAGIHAIPTGIDHGTVTAVIGKAHYEITTLRVDVESFGRHARIEYTDDWRADASRRDFT 136
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNI 182
+NAL AD +G V D G+ D+ ++F+G+ RI ED LR+LRFFRF AHYG +
Sbjct: 137 MNALSADPEGNVYDPFDGIADMAAGRVRFVGEPEKRIEEDALRLLRFFRFHAHYGRGIAM 196
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
++ L A + LK LS ER+ E+ +LL A +P +++ M++ GI I + +E
Sbjct: 197 ETRALNACRRMADRLKGLSGERVAGELVRLLLADDPTPSLLVMHSHGILAHILPEAKEFG 256
Query: 243 LDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+ +E + +I +R + + D+ L + ++ L + +
Sbjct: 257 RLRTLAWLERRGLARPEIRPDSMRRLAALLATDRAGALDLGERLKLSGVQAKRVAAMAAP 316
Query: 302 NFNQKT-LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF---ILQVLSDIIH 357
+ + P ++ G + + A + D +L
Sbjct: 317 RVHVGFAMDGPATRRALRKVGGDEFRDLVMVAWAARRSTEARPDAAESRCWTALLDAARD 376
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
W+ P+ G D+++ G+P G ++G++L + W + ++ + LR L+A+
Sbjct: 377 WQPVELPVKGRDLLELGVPHGPRIGSLLAAVEAWWEDLDYRPDRSQCLDRLRGLMAA 433
>gi|75676806|ref|YP_319227.1| polynucleotide adenylyltransferase region [Nitrobacter winogradskyi
Nb-255]
gi|74421676|gb|ABA05875.1| polynucleotide adenylyltransferase region [Nitrobacter winogradskyi
Nb-255]
Length = 418
Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats.
Identities = 142/411 (34%), Positives = 211/411 (51%), Gaps = 6/411 (1%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
S+ W + +LSLL +++ +VGGAVR++LM L V +IDIATT P+ VMR
Sbjct: 6 SLCDAGWLKSGPAVRVLSLLGGNGEEARVVGGAVRNALMGLPVVEIDIATTAPPEEVMRR 65
Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
+ R + IPT + +GT+ ++ K ++TTLR D+ T GR A+V F RDW D+ RRDF
Sbjct: 66 AAAARIRSIPTGVEHGTVTLVVEGKPVEVTTLREDVETFGRKARVAFGRDWARDAQRRDF 125
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
TIN L D G V D+VGGL+D+ R ++FIGD RI EDYLRILRFFR A YG
Sbjct: 126 TINGLSVDSGGTVHDHVGGLDDIAARRVRFIGDPDRRIAEDYLRILRFFRIHAAYGAGEP 185
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D DG +A I+ + GL LS+ER+ +EI KLL A + A V M +GG+ +F V
Sbjct: 186 DRDGYLACIRGRAGLATLSAERLRAEILKLLLADGAVEAAVAMEDGGLLLAVFGGVAYRG 245
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
L+ ++ AE E D + R + ++ + +A++ L L S +
Sbjct: 246 --PLAAMMAAESALELAPDPI-RRLAALAVSVTEDARRLAQRLRLSNAEAKQLDSMGHRW 302
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ ++ ++ Y G +L + D L V + W+ P
Sbjct: 303 WRLGSMDEATARRRLYRLGATRFRDRLMQAWSKAGLGA---DPAPWLNVATLPRRWQPPA 359
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
FPL +D + GI G +G++L + W+ F L L + + +A
Sbjct: 360 FPLKAEDFIVRGIAEGPALGHVLTLAEDAWLAEDFPLDSARLSAIADQTVA 410
>gi|312116357|ref|YP_004013953.1| polynucleotide adenylyltransferase region [Rhodomicrobium vannielii
ATCC 17100]
gi|311221486|gb|ADP72854.1| Polynucleotide adenylyltransferase region [Rhodomicrobium vannielii
ATCC 17100]
Length = 420
Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats.
Identities = 135/407 (33%), Positives = 218/407 (53%), Gaps = 7/407 (1%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
V++ WF ++ + LN+ + VGGAVR++L+ V ++D ATT PD +R
Sbjct: 7 VTVADAAWFRAPEVRAVFDCLNREGFEVRAVGGAVRNALLEEPVLEVDFATTAKPDDTLR 66
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ + K +PT I +GTI ++ F++TTLR D+ TDGR A V F DW D+ RRD
Sbjct: 67 LAAAAGIKTVPTGIDHGTITLVVDGVPFEVTTLRRDVDTDGRRATVAFGDDWAEDARRRD 126
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FT+NALYAD G V D + GL DL R ++F+GDA RI EDYLRILRFFRF A Y + +
Sbjct: 127 FTLNALYADATGAVHDPLDGLPDLLARRVRFVGDADTRIREDYLRILRFFRFSADYAKGD 186
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
D+DGL A+I+ ++GLK LS+ER+ +E+ ++L +AI M G+ + +
Sbjct: 187 FDADGLAAAIRERRGLKRLSAERVRAEMLRILVTVRAPDAIRIMDESGLLLIVLGGIARR 246
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
S + ++ E + D + R + +S ++ +A K L + R L+ +
Sbjct: 247 S--RFDRIAAIEAQLKLMPDPMYR-LAALSIFVEEDAERLAGKLRLSNDERNDLMGLASV 303
Query: 302 -NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ + L+ +++ L Y G + + + I A + F ++ + W++
Sbjct: 304 APWFRAPLAKRDLETLLYRIGARTYLGSVLIGWAASGAPIDDAAWRFAAELPRE---WQR 360
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
P FP+ G D++ G PG +G L + ++ +I S F L ++ L L
Sbjct: 361 PKFPVNGADLLNEGWLPGPGLGAHLRYLEERFIASGFTLDRKTLLAL 407
>gi|94498681|ref|ZP_01305232.1| Polynucleotide adenylyltransferase region [Sphingomonas sp. SKA58]
gi|94421844|gb|EAT06894.1| Polynucleotide adenylyltransferase region [Sphingomonas sp. SKA58]
Length = 403
Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats.
Identities = 135/418 (32%), Positives = 204/418 (48%), Gaps = 21/418 (5%)
Query: 1 MV-SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59
M S+ W H L +LS L E + VGGAVRD L+ L V D+DIAT++ P V
Sbjct: 1 MTVSLPDAPWRHRGGLSALLSALGAAEGTARYVGGAVRDGLLGLPVNDLDIATSLPPVTV 60
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
M K +PT I +GT+ + +ITTLR D+ TDGR A + +T DW+ D+ R
Sbjct: 61 MERLQGAGIKTVPTGIEHGTVTAVLADGPVEITTLRRDVSTDGRRATIAYTDDWREDAAR 120
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINALYAD I DY GG+ DL R ++FIG+A RI ED+LRILR+FRF A YG
Sbjct: 121 RDFTINALYADPLTGAISDYFGGIADLEARRLRFIGEADARIAEDHLRILRYFRFLARYG 180
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ ++D+ A + A L LS ERI E+ KL+ P A+ M GGI + + +V
Sbjct: 181 DNDVDNSAYAACVAAANSLMALSRERIADELLKLMAVAAPGQALRLMIEGGILRPVLPEV 240
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+D++ +IE E + R + + D + + L + R L+
Sbjct: 241 AMDGVDRVEALIEREAQAALPPSPV-RRLAALLPPDAAVADQVGARLKLSNKARKRLVLA 299
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + L + G + I +L + D+ + +L +I W
Sbjct: 300 LG-----QDGVGERPRALAFRIGTEAAIDRLLL------------DSARPIDMLDQVIGW 342
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
P P++G ++ G+ PG V L +Q W++ F + + ++++ Q
Sbjct: 343 TPPKLPISGGTLISRGLTPGPDVAKALRQVEQIWVDEDFP-DDGRVDQIADQIVSKFQ 399
>gi|84500746|ref|ZP_00998995.1| polyA polymerase family protein [Oceanicola batsensis HTCC2597]
gi|84391699|gb|EAQ04031.1| polyA polymerase family protein [Oceanicola batsensis HTCC2597]
Length = 386
Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats.
Identities = 116/403 (28%), Positives = 188/403 (46%), Gaps = 28/403 (6%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ W + + ++L ++ VGG VRD+L+ V DIDIAT P +VM +
Sbjct: 3 IGGDWLDHPGTVAVCAMLTAAGYRALFVGGCVRDALLGRPVGDIDIATDARPMQVMDLAE 62
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
K +PT +GT+ ++ ++TT R D+ TDGR+A V ++ D D+ RRDFT+
Sbjct: 63 AAGIKAVPTGFDHGTVTLVSHGLEHEVTTFRRDVETDGRHALVHYSDDPAEDAARRDFTM 122
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
NALYA +G+++D +GGL DLR R ++F+G+ RI+EDYLRILRFFRFFA YG+ +
Sbjct: 123 NALYATPEGEIVDPLGGLPDLRARRLRFVGEPAARIIEDYLRILRFFRFFAWYGDPSQGM 182
Query: 185 DGLVASIK--AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D + GL LS ER+ E+ KLL A +P A+ M G + + +
Sbjct: 183 DPEALAAIAGHVDGLSRLSRERVGHEMRKLLMAPDPSFAVAAMRQAGALSAVLPGSDDRA 242
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
L L + EQ + D + R + ++ S +
Sbjct: 243 LGPL---VHHEQALDVPPDPIRRLAAVTGDDPGPALRLSR------------AESRRHAT 287
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+L Y +G+ + L + AL + + + + +
Sbjct: 288 LRDAVGGTEGAAELGYRFGEAAALDILLLRWALLEHPGDP-------RQVEQVRRGAAAV 340
Query: 363 FPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
FP+ +D++ G +G+ L ++ WI S F L+++ L
Sbjct: 341 FPVRAEDLMPDL---SGAALGDRLKQLERRWIRSGFALTRDQL 380
>gi|68171795|ref|ZP_00545137.1| Polynucleotide adenylyltransferase [Ehrlichia chaffeensis str.
Sapulpa]
gi|88657671|ref|YP_507900.1| polyA polymerase/tRNA nucleotidyltransferase family protein
[Ehrlichia chaffeensis str. Arkansas]
gi|67998786|gb|EAM85496.1| Polynucleotide adenylyltransferase [Ehrlichia chaffeensis str.
Sapulpa]
gi|88599128|gb|ABD44597.1| polyA polymerase/tRNA nucleotidyltransferase family protein
[Ehrlichia chaffeensis str. Arkansas]
Length = 401
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 134/410 (32%), Positives = 201/410 (49%), Gaps = 15/410 (3%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ ++ +++ I++ + K + +VGG VRDSL+ DID ATT+LP++ + +
Sbjct: 4 DFINNENILLIINAIKKFQGDIRLVGGCVRDSLLKRQTIDIDFATTLLPNQTINALTAAH 63
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
K IPT I +GTI + ++ITTLRSD+ DGR+A+V FT +W+ D+ RRDFT NAL
Sbjct: 64 IKAIPTGIKHGTITALVNNTAYEITTLRSDISCDGRHAEVKFTNNWQQDASRRDFTFNAL 123
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
Y D++G V DY G+ DL + + FIGD RI EDYLRILR FRF+A +N SD +
Sbjct: 124 YCDEKGIVYDYFSGIQDLEKKHLNFIGDPEIRIQEDYLRILRAFRFYASICSQNKLSDEI 183
Query: 188 VASI-KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
V S K + LS ERI E KLL N N + M + +I + +
Sbjct: 184 VHSCTKYSSYINNLSRERIRDEFFKLLLCPNLSNTLKIMQKCHVLDKIIP------FEVI 237
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ +E + D L + L+ + L K + N +
Sbjct: 238 PDIMSSETLSNT--DPLTKLAALLRTNNNNHSLDKIKASLCLSNYSQKTLVSLLNNNLEL 295
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
LS K G ++ L+I A + + ++Q + P FP++
Sbjct: 296 PLSTTAQHKHINKLGKEIYCNLLRIIHA-----ELNLNYHDLMQYIEYADQLIIPEFPIS 350
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR-KLIASS 415
G D++ G PGK +G L K W NSS+QL++ L R KL+ S
Sbjct: 351 GKDLLNIGYQPGKNLGITLEKIKDLWENSSYQLTKTQLLDYARGKLLKSK 400
>gi|254293106|ref|YP_003059129.1| polynucleotide adenylyltransferase region [Hirschia baltica ATCC
49814]
gi|254041637|gb|ACT58432.1| Polynucleotide adenylyltransferase region [Hirschia baltica ATCC
49814]
Length = 428
Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats.
Identities = 142/415 (34%), Positives = 217/415 (52%), Gaps = 10/415 (2%)
Query: 3 SIVQHKWFHDSDLINILSLLNK-GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
+ W ++ LN D + VGG VR++L+ V DIDIAT PD V R
Sbjct: 8 RLPVQPWMQADGARRVMRALNAGAPDSARFVGGCVRNALLGQPVADIDIATKWEPDEVTR 67
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
K V PT I +GT+ + + ++ITTLR D+ TDGR+A V FT DW D+ RRD
Sbjct: 68 RLLKANVAVHPTGIEHGTVTAVANNQPYEITTLRRDVSTDGRHATVAFTTDWTEDAKRRD 127
Query: 122 FTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
F +NALY D G +ID G++DLR + I FIGDA R+ EDYLRILRFFRF A YG
Sbjct: 128 FHVNALYCDLMGDLIDPTGRGISDLREQKIAFIGDADTRLKEDYLRILRFFRFNAWYGSG 187
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D +GL A ++ + GL+ +S ERIWSE+ K+L A++P + M G+ + + +
Sbjct: 188 QLDVEGLSACLRHRAGLETISVERIWSELKKILAARDPRVVLEAMSQTGVLQFVLSE--A 245
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
I LD + ++ E D LR ++ + +D I + K+ + + L++ +
Sbjct: 246 IGLDLFNALVGLELEEHLAPDPYLR-LLSLYPKDIDVISADVKRLKMSNYEKKRLLATAS 304
Query: 301 CNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ K S ++ Y G V A+ ++ A+ H+ + Q ++
Sbjct: 305 DTTDFSKEFSAKAFRRAIYKTGKDVFKARARLAWAVRGREANHRYWRVLTQ---SAEKYE 361
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+P+FP++G+ ++ G+P GK VG +L +Q WI+ F S L +LIA
Sbjct: 362 RPVFPISGEHIIAVGVPEGKPVGEVLQRAEQWWIDEDFP-SDVALIARHMRLIAE 415
>gi|269958436|ref|YP_003328223.1| poly (A) polymerase [Anaplasma centrale str. Israel]
gi|269848265|gb|ACZ48909.1| poly (A) polymerase [Anaplasma centrale str. Israel]
Length = 425
Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats.
Identities = 114/393 (29%), Positives = 187/393 (47%), Gaps = 10/393 (2%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M + K D ++ I+ ++ +VGG VRDS++ + +DID+AT ++P+ VM
Sbjct: 1 MAQTMLSKLLDDPGVVRIVGVIEGARGSVRLVGGCVRDSVLGRNTKDIDLATDLVPESVM 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ K +PT + +GT+ + ++ITTLR D+ DGR+A V FT W D+ RR
Sbjct: 61 QALGGAGIKTVPTGVKHGTVTAVVEGIPYEITTLRRDVECDGRHAAVAFTNSWMEDASRR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
DFT NALY D+ GK+ DY G+ DL NRT+ FIG+A RI ED+LRILR FRF A
Sbjct: 121 DFTFNALYCDKHGKIYDYFSGIRDLGNRTVAFIGNAEARINEDFLRILRVFRFHASICNT 180
Query: 181 NIDSDGLVASI-KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ S+ +++ K + LS ER+ SE KLL + + + M G+ ++
Sbjct: 181 SPLSEEIISLCGKYAWSIAKLSKERVRSEFFKLLACTHCTSTLEIMERCGVLCQVVP--Y 238
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ + +LS V ++ K+ ++L+ D ++ + L++
Sbjct: 239 PVQIGRLSCVHLVDRTPITKLAAMLKGHAYT---DMAGVVEGLEGLLCLSRKEKKLLATL 295
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
L I + +K G V + + + L+ L +
Sbjct: 296 LTTDLPFPLPIAQQQKYLNDLGADVYRDLIIVSFL----SQDTLSENAFLEHLEYTKQFA 351
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
+ P++G D+ K G GK +G+ L K+ W
Sbjct: 352 PLVLPVSGKDLAKLGYKEGKLLGHTLKRLKEAW 384
>gi|254456611|ref|ZP_05070040.1| poly(A) Polymerase [Candidatus Pelagibacter sp. HTCC7211]
gi|207083613|gb|EDZ61039.1| poly(A) Polymerase [Candidatus Pelagibacter sp. HTCC7211]
Length = 424
Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats.
Identities = 110/402 (27%), Positives = 194/402 (48%), Gaps = 8/402 (1%)
Query: 11 HDSDLINILSLLNKG--EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
++ I +N + VGG VR + ++ DID+AT + P+ V K +
Sbjct: 27 TNTSANKIFDAINSYSENSEVRYVGGCVRKIIKKEAIDDIDLATNLKPNEVCEALKKNKI 86
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
T I +GTI + K+ ++IT+LR D++TDGR+AK+ F+ DWK D+ RRDF+IN++Y
Sbjct: 87 DYYETGIEHGTITALIDKQKYEITSLRKDILTDGRHAKIEFSSDWKEDAERRDFSINSIY 146
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+D+ G + D G DL I FIGD +RI EDYLRILR+ RFF +Y + +
Sbjct: 147 SDKNGNLFDPNNGKKDLEEGLINFIGDTENRIKEDYLRILRYVRFFINYSNHKHRPEIIK 206
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ G+ LSSER+ E K+ +KN L + + IF + + +
Sbjct: 207 IIKRNIDGISKLSSERLLDEFKKITNSKNFLKLFEDDLSLELLYLIFPQFKNLENFKKLN 266
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+F LL +V+ + + L + ++ + SF+N N K
Sbjct: 267 SYAKNNIFNIDFIFLLSLMVIDGTDNTEYFLYKFNISKIDQKRLKMINSFYNEGINIKKF 326
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ + K Y G++ +I + + +++ ++ +L P+ P+T
Sbjct: 327 TKKNLNKYLYYNGNEAVIDIINFKIF-----KSNKVEKKLINLLEYYKDKVIPIIPITAK 381
Query: 369 DVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
++ + IP GK +GN ++ W+N+ F++S + + +++
Sbjct: 382 TLMNDFNIPEGKTLGNKFKSIEEIWVNNGFKISDKQVQKVIK 423
>gi|300024044|ref|YP_003756655.1| polynucleotide adenylyltransferase region [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525865|gb|ADJ24334.1| Polynucleotide adenylyltransferase region [Hyphomicrobium
denitrificans ATCC 51888]
Length = 418
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 128/404 (31%), Positives = 197/404 (48%), Gaps = 8/404 (1%)
Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66
W L N+ + + + + +VGGA+R++L++ V D+D+AT +PD V+ + +
Sbjct: 13 AGWLDAKPLRNVFAAFDAAQAEVRVVGGAIRNTLIDRPVIDVDLATPAVPDAVIELARRA 72
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
PT I +GT+ ++ F++TTLR D+ TDGR+A V FT+ W D+ RRDFTINA
Sbjct: 73 GLGAHPTGIEHGTVTLVSDGVGFEVTTLRRDIETDGRHATVAFTQSWDEDAQRRDFTINA 132
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
LY G + D +GG+ DLR R ++FIGD RI EDYLRILRFFRF A YG+ ++D DG
Sbjct: 133 LYCAPDGAIYDPMGGIADLRRRRVRFIGDGEARIREDYLRILRFFRFSAEYGKGHLDVDG 192
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A+IK K+GL L++ERI +E KLL A + MY I + + ++L
Sbjct: 193 LAAAIKLKQGLSKLAAERIRAEFLKLLAAPYAAEVVRAMYESEILALVLPGT--LHPERL 250
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF-NQ 305
+++ E D ++ + ++ + +A++ L L S + +
Sbjct: 251 ARLQAIEAGLGQPPD-VICGLAALAVSGPGDVDELAQRLRLSNSEASALRSAASFDPGLD 309
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
Y G + + A T + + W P P
Sbjct: 310 PAQPEAAACAALYRLGSEAFRRAAVVAWARSNAAAT---DAAWRKRALLVDRWSPPKMPF 366
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLL 408
+G DV+ GIP G VG IL + WI ++F + L
Sbjct: 367 SGSDVLALGIPAGPSVGEILRAFETWWIAAAFPADRALQLEKFK 410
>gi|225677338|ref|ZP_03788313.1| poly A polymerase family protein [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225590624|gb|EEH11876.1| poly A polymerase family protein [Wolbachia endosymbiont of
Muscidifurax uniraptor]
Length = 390
Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats.
Identities = 141/395 (35%), Positives = 210/395 (53%), Gaps = 14/395 (3%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
I+ + + ++ +VGG VRDS++ V DID+AT +LP++ ++ K IPT + +
Sbjct: 10 IIDAIEEFGGEARLVGGCVRDSILQRDVHDIDLATNLLPNQTIKALKLRNIKTIPTGLKH 69
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
GTI + ++ F+ITTLR D+ DGR+AKV FT +W+AD+ RRDFT NALYAD+ G + D
Sbjct: 70 GTITAVLNQRSFEITTLRHDVKCDGRHAKVEFTNNWQADASRRDFTFNALYADKHGHIYD 129
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
Y GG+ DL+ R + FIG+A RI EDYLRILR FRF A ++ + L K +
Sbjct: 130 YFGGIEDLKARRLNFIGNAEDRIKEDYLRILRAFRFHAKICAGDLSDEILSVCKKHSHMI 189
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
+ LS ERI EI KLLE +P + M + ++I +E+ + LS +
Sbjct: 190 QNLSGERIRDEILKLLECNDPFPTLKSMQESDVLQKIIP--KEVKCEILSSSLLLGTDAL 247
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
K+ LLR D+ S+ KF + + F N + LS E KK
Sbjct: 248 VKLALLLRTT----KNDRLSLGEYVSKFLRLSNKQKKKLLFLLSNDIKTELSEKEQKKYI 303
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
L+G ++ +KI N I + +S + P FPL+GDD++ G P
Sbjct: 304 SLFGRELYCDLIKICGVESGEN--------IDKYISFANTFNIPKFPLSGDDLISIGHQP 355
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
GK +G L KQ W +SS+ L++E+L + L+
Sbjct: 356 GKSLGKNLELLKQHWEDSSYTLTKEELVLYAKSLL 390
>gi|307944158|ref|ZP_07659499.1| tRNA-nucleotidyltransferase 1 [Roseibium sp. TrichSKD4]
gi|307772504|gb|EFO31724.1| tRNA-nucleotidyltransferase 1 [Roseibium sp. TrichSKD4]
Length = 416
Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats.
Identities = 125/407 (30%), Positives = 210/407 (51%), Gaps = 5/407 (1%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ W H + L + L K ++ VGGAVR+SL+++ V D+DIATT P+ V+
Sbjct: 10 LSGQDWLHANGLQRLFDALEKAGAEARAVGGAVRNSLVSVPVVDVDIATTARPEDVIAAV 69
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
+ K IPT + +GT+ ++ + +++TTLR D+ T GR AKVVF DW D+ RRDFT
Sbjct: 70 NAAGLKPIPTGVDHGTVTVLSEGEAYEVTTLRRDVETFGRQAKVVFGSDWIEDAKRRDFT 129
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+NA+YAD+ G + D +GG+ D ++FIG+ RI EDYLRILRFFR A YG+ +D
Sbjct: 130 LNAIYADRAGTLFDPLGGVPDCLAGRVRFIGNPEGRIREDYLRILRFFRIHATYGKGKLD 189
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
+GL A + ++GL+ LSSERI +E+ +LL A + + M GI ++ +Q+
Sbjct: 190 PEGLAACARLQEGLQTLSSERIGAEMKRLLPASGGSSVVPEMAQKGILHQVL--LQDADT 247
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
D ++ ++V + + ++ +A++ L ++S
Sbjct: 248 DVYCRL-HGYAAIRNTPIPFTTYLVALIGLSESTLRKVAERLRLSNRELDHMLSVAKAAE 306
Query: 304 NQKTLSIPEIKK-LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV-LSDIIHWKKP 361
Q T + P + Y +G + + + H + + + LS + + + P
Sbjct: 307 TQSTSNPPIDPRLQLYHFGAVASLQAAFLSFSAHEHVSSADGLSDCQEAFLSALENEELP 366
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+FP+ G D++ G+ PG ++G L + WI + + +L L
Sbjct: 367 VFPIQGKDLISAGMAPGPEIGAALKKLENIWIAGGLKQGRSELLKLA 413
>gi|190892793|ref|YP_001979335.1| poly(A) polymerase [Rhizobium etli CIAT 652]
gi|190698072|gb|ACE92157.1| poly(A) polymerase protein [Rhizobium etli CIAT 652]
Length = 377
Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats.
Identities = 142/375 (37%), Positives = 215/375 (57%), Gaps = 6/375 (1%)
Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT 100
M L V DIDIATT+ P+ V+ + K +PT + +GT+ ++ K F++TTLR+D+ T
Sbjct: 1 MGLPVSDIDIATTLTPEIVIERAAAAGIKAVPTGLQHGTVTLVIDGKPFEVTTLRTDVET 60
Query: 101 DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
DGR+AKV F+ DWKAD+ RRD TINALYAD +G+V+D VGGL D+ R I+FIGDA RI
Sbjct: 61 DGRHAKVAFSTDWKADAERRDLTINALYADARGEVVDLVGGLADIEARNIRFIGDAATRI 120
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED+LRILRFFRFFA+YG D++GL A A+ LK LS+ER+WSE+ KLL A +P
Sbjct: 121 AEDHLRILRFFRFFAYYGSGRPDAEGLKACAAARSKLKTLSAERVWSELRKLLGAADPGR 180
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
A++ M + EI + + +D + ++ E+ W D LLR ++ D + +
Sbjct: 181 ALLWMRQVAVLTEILPETERWGIDAIPALVATEKALGWAPDPLLRLAAIVP-PDAARLEA 239
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+A + L L ++ +S ++L Y G + +LK+ L +
Sbjct: 240 LAARLKLSNAEAATLKAWAMAAPIDDEISSAAFERLLYRNGADGITTRLKLALGVARGKA 299
Query: 341 TH-----QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
+ + ++L + WKKP FP+ G DV+ GIP G +VG +L + +W+
Sbjct: 300 EGDLSEMARSARLGKLLDRAMTWKKPQFPVNGADVIAAGIPSGPRVGELLGSLENQWVEE 359
Query: 396 SFQLSQEDLHHLLRK 410
+F + +L L++
Sbjct: 360 NFASDRAELLARLQE 374
>gi|317418942|emb|CBN80980.1| 'tRNA-nucleotidyltransferase 1, mitochondrial' [Dicentrarchus
labrax]
Length = 427
Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats.
Identities = 110/403 (27%), Positives = 201/403 (49%), Gaps = 13/403 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ L + + K + + I GGAVRD L +D+D ATT P+ + R+F +
Sbjct: 34 LFNDGLNGLAEVFEKHQHELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKRMFQSAGIR 93
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI + F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 94 MINNKGEKHGTITARLHNENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMF 153
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDG 186
G + DY G +DL+NR ++F+G A RI EDYLRILR+FRF+ + + +
Sbjct: 154 LGLDGTLYDYFKGYDDLQNRKVRFVGSAEQRIQEDYLRILRYFRFYGRVALEPDDHEPET 213
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + +GL +S ERIW EI K++ + + + MY+ + + I + + +++++
Sbjct: 214 LAAIRENGRGLAAISGERIWVEIKKMVVGNHAAHLLELMYSLELAQYIGIP-PDGNVEEM 272
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+V + + K ++L + + + M + + RE + + ++
Sbjct: 273 KRVWQNAKDHSPKPMTILAALFHCP----EEVEKMDLRLKVSREEKNLALFLVKF--RRE 326
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + D ++ + + L +Q ++L ++ W P FP+
Sbjct: 327 LRKSQDDPDSLKPFTDFIIDNRELDSQSKVCELLKYQGEE---KLLKELCRWSTPRFPVN 383
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G D+ + GI GK++G L + W S +Q+ +++L ++
Sbjct: 384 GHDLRRMGITSGKEIGATLQKLRDIWKTSRYQMDKDELLSYVK 426
>gi|196005311|ref|XP_002112522.1| hypothetical protein TRIADDRAFT_25022 [Trichoplax adhaerens]
gi|190584563|gb|EDV24632.1| hypothetical protein TRIADDRAFT_25022 [Trichoplax adhaerens]
Length = 400
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 121/402 (30%), Positives = 208/402 (51%), Gaps = 19/402 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L ++ L + + +VGG VRD L++ +DID+AT PD+++ I K K
Sbjct: 13 IITDELKRVIQLFQENNYQIRLVGGVVRDVLLDKVAKDIDLATDATPDQMIEILKKNEIK 72
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ T + +GTI +I K F+ITTLR D ITDGR+A+V FT DW+ D+ RRD TINA+
Sbjct: 73 YVETGLQHGTITVIINKAIFEITTLRIDAITDGRHAQVQFTNDWRIDAERRDLTINAMSL 132
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY--GEKNIDSDGL 187
G + DY G DL NR I F+G+ RI EDYLRILR+FRF+ + D D L
Sbjct: 133 SIDGTLFDYFNGREDLINRRIIFVGNTRKRIQEDYLRILRYFRFYGRIAANADSHDPDIL 192
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
GL+ ++SERIW E++K+L + + MY+ G+ I L ++ ++++
Sbjct: 193 QEIRHTAAGLEKIASERIWMEMSKILVGNFAPDLLRLMYDLGVASHINLP-KDGNVEEFQ 251
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+ + + ++ + LL +V S ++A+ + L R+ + F Q
Sbjct: 252 AIWDRMRNYKPQPAVLLASLV----NSVSSAEALARTWKLSNVERF--LMKFITGKRQNH 305
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
+I + + + + + + + ++ Q++ DI +W P FP+ G
Sbjct: 306 YTILKQYQDLLFDKETMSRDHIIQLMYYNGHS----------QLVDDINNWVIPKFPIGG 355
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+D+ G PG + L K+ W++++++ ++E+L L++
Sbjct: 356 NDLKSLGHKPGPQFKRTLDMLKKHWMDTNYKTTKEELLMLIQ 397
>gi|42520318|ref|NP_966233.1| poly A polymerase family protein [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42410056|gb|AAS14167.1| poly A polymerase family protein [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 391
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 140/394 (35%), Positives = 209/394 (53%), Gaps = 13/394 (3%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
I+ + + ++ +VGG VRDS++ V DID+AT +LP++ ++ K IPT + +
Sbjct: 10 IIDAIEEFGGEARLVGGCVRDSILQRDVHDIDLATNLLPNQTIKALKLRNIKTIPTGLKH 69
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
GTI + ++ F+ITTLR D+ DGR+AKV FT +W+AD+ RRDFT NALYAD+ G + D
Sbjct: 70 GTITAVLNQRSFEITTLRHDVKCDGRHAKVEFTNNWQADASRRDFTFNALYADKHGHIYD 129
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
Y GG+ DL+ R + FIG+A RI EDYLRILR FRF A ++ + L K +
Sbjct: 130 YFGGIEDLKARRLNFIGNAEDRIKEDYLRILRAFRFHAKICVGDLSDEILSVCKKHSHMI 189
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
+ LS ERI EI KLLE +P + M + ++I +E+ + LS +
Sbjct: 190 QNLSGERIRDEILKLLECNDPFPTLKSMQESDVLQKIIP--KEVKCEILSSPLLLGTDAL 247
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
K+ LLR D+ S+ KF + + F N + LS E KK
Sbjct: 248 VKLALLLR---ATKKNDRLSLGEYVSKFLRLSNKQKKKLLFLLSNDIKTELSEKEQKKYI 304
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
L+G ++ +KI N+ + +S + P FPL+GDD++ G P
Sbjct: 305 SLFGRELYCDLVKICGVESGENVD--------EYISFANTFNIPKFPLSGDDLISIGHQP 356
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
GK +G L KQ W +SS+ L++E+L + L
Sbjct: 357 GKSLGRNLELLKQHWEDSSYTLTKEELVLYAKNL 390
>gi|47227381|emb|CAF96930.1| unnamed protein product [Tetraodon nigroviridis]
Length = 407
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 114/403 (28%), Positives = 200/403 (49%), Gaps = 13/403 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L + L K + I GGAVRD L +D+D ATT P+ + R+F +
Sbjct: 14 LFTDGLNGLAELFVKHHHELRIAGGAVRDLLSGRRPEDVDFATTATPEEMKRMFQSAGVR 73
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I T +GTI + F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 74 MINTKGEKHGTITARLHNENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMF 133
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDG 186
G + DY G DL+NR ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 134 LGLDGTLYDYFQGYEDLQNRKVRFVGSAVERIQEDYLRILRYFRFYGRVALEPDDHDPET 193
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + GL +S ERIW E+ K++ + + + +Y+ + + + L + ++++
Sbjct: 194 LKAIRENGCGLASISGERIWVELKKMVVGDHAAHLLELIYSLELAQYMGLP-PDGDIEEM 252
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+V + K ++L ++ + + M + + RE + + ++
Sbjct: 253 KRVWRNAKAHAPKPATMLASLLHSP----EEVEKMDLRLKVSREEKNLALFLVRY--RRE 306
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
P+ Y D ++ ++ + L +Q ++L+ + W P FP++
Sbjct: 307 LQKSPDEPDSLRPYTDFIIDSREADYQNKVCELLKYQGEP---KLLAQLSRWSIPRFPIS 363
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G D+ K GI GK++G L + W S +++ +E+L ++
Sbjct: 364 GHDLRKMGITSGKEIGVALQQLRDVWKKSRYRMEKEELLSYVK 406
>gi|148553037|ref|YP_001260619.1| polynucleotide adenylyltransferase region [Sphingomonas wittichii
RW1]
gi|148498227|gb|ABQ66481.1| Polynucleotide adenylyltransferase region [Sphingomonas wittichii
RW1]
Length = 401
Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats.
Identities = 131/416 (31%), Positives = 195/416 (46%), Gaps = 21/416 (5%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M + W H L +L L E VGGAVRD+L+ L V+DID AT +LP+
Sbjct: 1 MTLLPDAAWRHLPGLDRLLDALGAAEGDVRFVGGAVRDTLLGLPVKDIDCATRLLPEESS 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
R + +K IPT I++GT+ + ++TTLR D+ TDGR A V FT +W+ D+ RR
Sbjct: 61 RRIAAAGFKAIPTGIAHGTVTALLPSGPVEVTTLRRDVATDGRRAVVAFTDEWREDAARR 120
Query: 121 DFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINAL AD V DY GG DL ++FIGD RI ED+LRILR FRF A +G
Sbjct: 121 DFTINALSADPSTGAVHDYFGGRADLDAGLVRFIGDPLRRIAEDHLRILRLFRFHARFGR 180
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
D+ L A I L LS ER+ E+ KLL +P + M++ GIF+ I ++
Sbjct: 181 GTPDAAALDACIARANDLMALSRERVADELLKLLGVADPAPTVRLMHDSGIFRPIIPEID 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ +L ++I E + D+L R L+ + ++A++ L + L
Sbjct: 241 GDGVARLDRLIAREAIAGTAADALRRLGALLPPDPVIAA-AIAQRLKLSKAATRRLEQAA 299
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ + L Y +G +V L L + W+
Sbjct: 300 SGI-------DDAPRALAYRFGAEVAADLLLRGERPAEALG-----------LDTLDGWE 341
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+P P+ G +++ G+ G V L ++ WI F + L + +A +
Sbjct: 342 RPRLPIGGGELIAMGLKAGPVVAATLQAIERRWIAEGFP-GDARVAELAAEAMAQA 396
>gi|73667505|ref|YP_303521.1| polynucleotide adenylyl transferase [Ehrlichia canis str. Jake]
gi|72394646|gb|AAZ68923.1| Polynucleotide adenylyl transferase [Ehrlichia canis str. Jake]
Length = 396
Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats.
Identities = 129/403 (32%), Positives = 198/403 (49%), Gaps = 16/403 (3%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ D+++I++ + K + + +VGG VRD+++ DID ATT+LP++++ + K I
Sbjct: 8 NDDILSIINAIKKFQGEIRLVGGCVRDNMLKRQTTDIDFATTLLPNQIVESLTTANIKTI 67
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
PT I +GTI I ++ITTLRSD+ DGR+A+V FT +W+ D+ RRDFT NALY D+
Sbjct: 68 PTGIKHGTITAIVNNTAYEITTLRSDINCDGRHAEVKFTNNWRQDASRRDFTFNALYCDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLVAS 190
QG V DY G+ DL + + FIGD RI EDYLRILR FRF+ KN + +
Sbjct: 128 QGIVYDYFSGIEDLEKKQLNFIGDPEIRIKEDYLRILRAFRFYTSICSKNTLSDQIIYCC 187
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K + LS ERI E KLL N N + M + ++I
Sbjct: 188 TKYSSCINKLSKERIRDEFFKLLSYANLTNTLKIMQKCQVLEKIIP---------FDITP 238
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ L + + +K S+ ++ L + L N + LSI
Sbjct: 239 DIMSSDILSNTDPLTKLAALLRTNKCSLDTIKVSLCLSNHDQKILALL-LNNNLELPLSI 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
E +K G KV +KI A + + ++Q + + P FP++G D+
Sbjct: 298 IEQQKYINKLGKKVYCNLMKIRHA-----ELNLNHHDLVQYIEYADKFIIPEFPISGKDL 352
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
G GK +G L K W +SS+QL++ L + ++L+
Sbjct: 353 FNIGYQEGKNLGKTLKKIKDLWEDSSYQLTKSQLLNHAKELLE 395
>gi|58584420|ref|YP_197993.1| tRNA nucleotidyltransferase/poly(A) polymerase [Wolbachia
endosymbiont strain TRS of Brugia malayi]
gi|58418736|gb|AAW70751.1| tRNA nucleotidyltransferase/poly(A) polymerase [Wolbachia
endosymbiont strain TRS of Brugia malayi]
Length = 399
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 134/395 (33%), Positives = 201/395 (50%), Gaps = 13/395 (3%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
I+ + K + +VGG VRDS++ V DID+AT +LP +V+ K IPT + +
Sbjct: 18 IIDAVEKFGGEVRLVGGCVRDSILQRKVHDIDLATNLLPSQVIEALKFHNIKAIPTGLKH 77
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
GTI + ++ F+ITTLR D+ DGR+AKV FT +W+AD+ RRDFT NALYA++ G + D
Sbjct: 78 GTITAVLNQRSFEITTLRHDVKCDGRHAKVEFTDNWRADASRRDFTFNALYANKYGHIYD 137
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
Y GG DL+ R + FIG+A RI EDYLRILR FRF A ++ L K +
Sbjct: 138 YFGGTQDLKARRLNFIGNAEDRIKEDYLRILRAFRFHAKICIGDMSDKILNVCKKHAHKI 197
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
LS ERI E+ KLLE P+ + M + ++I +E+ + LS
Sbjct: 198 YNLSGERIRDEMFKLLEYDAPVPTLKSMQKSDVLQKIIP--KEVKCEILSSAFLFGTDAL 255
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
K+ LLR D+ S+ KF + + F N + L+ E +K
Sbjct: 256 VKLALLLR---TTEKNDRLSLGEYVSKFLRLSNKQKKKLLFLLSNNIKTELTEKEQRKYI 312
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
L G ++ +K+ N+ + +S FPL+GDD++ G P
Sbjct: 313 SLLGKELYCDLVKVCGVESGANVD--------EYISLAQVLNIQKFPLSGDDLINIGYQP 364
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
GK +G L +Q W +SS+ L++++L + L+
Sbjct: 365 GKNLGRNLKLLRQHWEDSSYTLTKKELMLYAKSLL 399
>gi|158425129|ref|YP_001526421.1| putative poly(A) polymerase [Azorhizobium caulinodans ORS 571]
gi|158332018|dbj|BAF89503.1| putative poly(A) polymerase [Azorhizobium caulinodans ORS 571]
Length = 413
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 135/402 (33%), Positives = 208/402 (51%), Gaps = 11/402 (2%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
S+ + L +L+ LN +++ IVGGAVR+ L+ +V ++D+A+T LP+ V+R
Sbjct: 5 SLAGAAFLAAPPLRAVLAALNGDGEETRIVGGAVRNGLLGEAVGEVDLASTCLPEEVVRR 64
Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
K +PT I++GT+ ++ F++TTLR D+ TDGR+A V F RDW D+ RRDF
Sbjct: 65 AEGAGLKSVPTGIAHGTVTVVSAGVPFEVTTLREDVETDGRHAVVRFGRDWARDAARRDF 124
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
T+NALYAD G V D VGGL DL R ++FIGDA RI ED+LRILR FRF A Y + +
Sbjct: 125 TLNALYADADGLVFDPVGGLPDLMARRVRFIGDAETRIREDHLRILRLFRFHATYAKGPV 184
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D++ L A+ + + GL LS ER+ +E+ KLL A+ + +V M + G+ I V ++S
Sbjct: 185 DAEALRAAERLRAGLDQLSRERVRAELVKLLVARRAADTLVEMTDAGLLTRILAGVPDLS 244
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ + E + + R + ++ + + + + L L++
Sbjct: 245 G--FAHLARLEPELGIQPAPM-RRLAALAVRIPEDAERLRVRLRLANAEHARLLALAGAR 301
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LS PE + L + G V L I A + + W P
Sbjct: 302 AVGPGLSAPEARALIFALGADVFRDALLIAAARRGGDPSALLALA--------AAWPVPE 353
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
FPLT D++ G+ PG K+G L ++ W+ + F E L
Sbjct: 354 FPLTARDLMALGLKPGPKLGAALASAREAWVAADFPHDAETL 395
>gi|190570623|ref|YP_001974981.1| poly A polymerase family protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019125|ref|ZP_03334932.1| poly A polymerase family protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190356895|emb|CAQ54272.1| poly A polymerase family protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995234|gb|EEB55875.1| poly A polymerase family protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 408
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 138/404 (34%), Positives = 203/404 (50%), Gaps = 20/404 (4%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
I+ + K ++ +VGG VRDS++ + DID+AT +LP++ ++ K IPT + +
Sbjct: 10 IIEAIEKFGGEARLVGGCVRDSILQRDIHDIDLATNLLPNQAVKALKLRNIKTIPTGLKH 69
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
GTI I K+ F+ITTLR D+ DGR+AKV FT DW+AD+ RRDFT NALYAD+ G + D
Sbjct: 70 GTITAILNKRSFEITTLRHDVKCDGRHAKVEFTNDWQADASRRDFTFNALYADKYGHIYD 129
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
Y GG+ DL+ R + FIG+A RI EDYLRILR FRF A ++ + L K +
Sbjct: 130 YFGGIQDLKARKLNFIGNAEDRIKEDYLRILRAFRFHAKICIGDLSDEILDVCKKHSHMI 189
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGG-----------IFKEIFLDVQEISLDQL 246
+ LS ERI EI KLLE +P + M +
Sbjct: 190 QNLSGERIREEIFKLLECNDPAPTLKSMQKSDVLQKIIPKEVKCEILSSPLLINTKPPTK 249
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISW-QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ ID+L + +LI +D+ S+ KF + + F N +
Sbjct: 250 PSAYGHTPFLDPTIDALTKLALLIRTAEDRVSLGEEVSKFLRLSNKQKKKLLFLLSNDIK 309
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
LS E KK L+G ++ +KI N+ + +S + P FPL
Sbjct: 310 TELSEKEQKKYISLFGKELYCDLMKICGIESGTNVD--------EYISFAHIFNIPKFPL 361
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+GDD++ G PGK +G L +Q W +SS+ L++E+L +
Sbjct: 362 SGDDLIIIGHQPGKNLGRNLELLRQHWEDSSYTLTKEELLLYAK 405
>gi|294011466|ref|YP_003544926.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Sphingobium
japonicum UT26S]
gi|292674796|dbj|BAI96314.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Sphingobium
japonicum UT26S]
Length = 402
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 134/418 (32%), Positives = 198/418 (47%), Gaps = 22/418 (5%)
Query: 1 MVSI-VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59
M S+ W H L +L L + + VGGAVRD L+ L V D+DIAT + P V
Sbjct: 1 MTSLLPDADWRHRPGLDALLRALGAEQGLARFVGGAVRDGLLGLPVNDLDIATVLEPQSV 60
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ K +PT I +GTI + +ITTLR D+ TDGR A + +T DW+ D+ R
Sbjct: 61 IDRLKAAGIKAVPTGIDHGTITAVINGWPVEITTLRRDVSTDGRRATIAYTDDWRKDAAR 120
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINALYAD I D+ GG+ DLR ++FIGDA RI ED+LRILR+FRF A +G
Sbjct: 121 RDFTINALYADPLTHAITDFFGGVADLRAHRVRFIGDAGARIAEDHLRILRYFRFLARFG 180
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
D + A +A L LS ERI E+ KLL PL ++ M +GGI + +V
Sbjct: 181 HDEPDDEAYAACREAANSLMALSRERIADELLKLLALPRPLASLRLMVDGGILLPVLPEV 240
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
L +LS +I+ E + LR + + D + + + L + R L +
Sbjct: 241 DHGGLARLSALIDREAASG-TAPAALRRLAALLPPDPRVADQVGARLKLSNKARKRLATA 299
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ ++ + G + I ++ I D L + ++ W
Sbjct: 300 LEGAASAPPRAL------AFRIGVEGAIDRMLI------------DPSAPLNDMKLLVGW 341
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
P PL G +++ G+ PG V L + W+ F + L + + ++ Q
Sbjct: 342 TPPRLPLGGGALIERGLQPGPDVAKALAEVQDIWVAEGFP-DEARLSEIADQTVSKFQ 398
>gi|194745490|ref|XP_001955221.1| GF18651 [Drosophila ananassae]
gi|190628258|gb|EDV43782.1| GF18651 [Drosophila ananassae]
Length = 487
Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats.
Identities = 127/408 (31%), Positives = 210/408 (51%), Gaps = 18/408 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L +++SL K + + I GGAVRD LMN+ +DID+ATT P ++ +F K +
Sbjct: 76 IFTPELESLVSLFKKYDYELRIAGGAVRDILMNMEPKDIDLATTATPSQMKEMFEKEEVR 135
Query: 70 VIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI K+ F++TTLR D+ TDGR+A+VV+T DW+ D+ RRD TIN++
Sbjct: 136 MINANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVVYTTDWQLDANRRDLTINSM 195
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSD 185
+ G V DY G +DL+ R + F+GDA RI EDYLRILR+FRF+ K D
Sbjct: 196 FLGLDGTVYDYFYGYDDLQERRVVFVGDADIRIKEDYLRILRYFRFYGRIAKDAKRHDEA 255
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
LVA GL +S ERIW+E+ K++ + ++ M +F+ I L + +L++
Sbjct: 256 TLVAVKDNAAGLSRISGERIWTELQKIVVGNFGSDLLLEMNRCHLFEHIGLPGKP-NLEE 314
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
++ +A + FE +L +++ + + K S ++ F +
Sbjct: 315 FDRLCKALEKFEKPHYPILYMSGMLNSVNDAMAMHNRLKLSAYERD----LALFITQHRE 370
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
K + + + + + + + + L Y+N + + W KP FP+
Sbjct: 371 KVDTDYKSIRDYQKLCIQPNVNRDYVEQLLKYSNKLV--------LYQQLKSWSKPNFPV 422
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
G + G+ GKKVG ++ K W +S F+ + EDL L+ +++A
Sbjct: 423 NGHSLSSLGLK-GKKVGQVMNELKLHWADSDFKSTSEDLLKLVPEIVA 469
>gi|163745090|ref|ZP_02152450.1| polyA polymerase family protein, putative [Oceanibulbus indolifex
HEL-45]
gi|161381908|gb|EDQ06317.1| polyA polymerase family protein, putative [Oceanibulbus indolifex
HEL-45]
Length = 386
Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats.
Identities = 124/403 (30%), Positives = 184/403 (45%), Gaps = 26/403 (6%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+W HD D + ++ G + VGG VRD+L+ L D+D++T P+ VM +
Sbjct: 4 ADTRWLHDEDAQQVCRVVQDGGYRIYFVGGCVRDALLGLPDSDVDLSTDAPPETVMALAR 63
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
K +PT I +GT+ ++ K F+ITT R D+ TDGR A V F+ D D+ RRDFT+
Sbjct: 64 AAGVKAVPTGIDHGTVTLVAGGKPFEITTFRRDVETDGRRAVVAFSSDIAEDARRRDFTM 123
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
NALYA G+V+D +GGL DL R ++FI +A RI EDYLR LR+FRF A YG +
Sbjct: 124 NALYATPDGQVLDPLGGLPDLHARRLRFIENAEQRIREDYLRTLRYFRFMAWYGSPQVGP 183
Query: 185 DGLVASIKAKKGL--KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ A + LS+ER+ E KLL A +P A+ M G + +
Sbjct: 184 EPDALDAIASNLDGLETLSAERVGQEFRKLLRASDPAPALALMRQTGALPVLLPGSDD-- 241
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+S ++ E D L+R L + + L + L
Sbjct: 242 -RWISMLVHFEHALGLTPDWLVRLAALGG-------EGLTDRLRLSKVEVKRLALLQEHG 293
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
F LS Y +G +V A + + + VL I +
Sbjct: 294 FAGPPLSELA-----YRHGAEVAQAAALLRGCMAEQMPENA-------VLETISRTAQAR 341
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
FP++ D++ G ++G L +Q WI S F LS+ +L
Sbjct: 342 FPVSAKDLMPKF--KGPELGCELARLEQLWIASGFTLSRAELL 382
>gi|209154746|gb|ACI33605.1| tRNA-nucleotidyltransferase 1, mitochondrial precursor
Mitochondrial [Salmo salar]
Length = 430
Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats.
Identities = 120/404 (29%), Positives = 200/404 (49%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L I + K + + I GGAVRD L +D+D ATT P+ + +F K +
Sbjct: 36 LFSDGLNGIAEIFEKHKFELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKSMFQKAGIR 95
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI + F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 96 MINNKGEKHGTITARLHNENFEVTTLRVDVETDGRHAEVEFTTDWQKDAERRDLTINSMF 155
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDG 186
G + DY G DL+NR ++F+G A RI EDYLRILR+FRF+ K D
Sbjct: 156 LGLDGTLYDYFQGYEDLKNRKVRFVGSAEQRIQEDYLRILRYFRFYGRVSVKAAEHDPAT 215
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + +GL +S ERIW E+ K++ + + + MY G+ + I L E +++L
Sbjct: 216 LEAIRENARGLAAISGERIWVELKKMVVGNHAAHLLKVMYELGLAQYIGLPA-EGDVEEL 274
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
Q+ + + K ++L + S + M + + RE + + +
Sbjct: 275 KQIWQHVKDHSPKPVTVLSALFRCSQD----VEKMDLRLKVSREEKNLGLFLVKH--RRD 328
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ Y D ++ ++ + L +Q ++L+++ W P FP++
Sbjct: 329 LHKSQDDPDSLKPYTDFIIDSREVDAQSKVCELLKYQGED---KLLAEMSRWSIPRFPVS 385
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G L + + W S +Q+ +++L + K
Sbjct: 386 GHDLRKMGITSGKEIGTTLQNLRDVWKRSRYQMDKDELLCHVNK 429
>gi|238854426|ref|ZP_04644767.1| putative tRNA adenylyltransferase/tRNA cytidylyltransferase
[Lactobacillus jensenii 269-3]
gi|260664441|ref|ZP_05865293.1| tRNA adenylyltransferase [Lactobacillus jensenii SJ-7A-US]
gi|282934012|ref|ZP_06339300.1| tRNA adenylyltransferase [Lactobacillus jensenii 208-1]
gi|313472159|ref|ZP_07812651.1| poly A polymerase [Lactobacillus jensenii 1153]
gi|238832953|gb|EEQ25249.1| putative tRNA adenylyltransferase/tRNA cytidylyltransferase
[Lactobacillus jensenii 269-3]
gi|239529533|gb|EEQ68534.1| poly A polymerase [Lactobacillus jensenii 1153]
gi|260561506|gb|EEX27478.1| tRNA adenylyltransferase [Lactobacillus jensenii SJ-7A-US]
gi|281301922|gb|EFA94178.1| tRNA adenylyltransferase [Lactobacillus jensenii 208-1]
Length = 396
Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats.
Identities = 86/396 (21%), Positives = 169/396 (42%), Gaps = 16/396 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ ++ L K ++ VGG+VRD L+N + D+DIAT+ P+ V ++F + I T
Sbjct: 13 ALPVVQTLTKAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPEEVKQLFE----RSIDTG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ R V F ++ + D RRDFTINAL D+
Sbjct: 69 IQHGTVTVLYDDDSYEITTFRTESGYQDYRRPDHVEFVQNLEEDLKRRDFTINALAMDEY 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G + D GL+DL+N IK +G+ R ED LR++R RF + + +++ + A
Sbjct: 129 GNIHDLFNGLDDLKNGLIKAVGNPERRFNEDALRMMRAVRFMSQL-KFSLEENTRQAICD 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ L +S ERI E K+ + +A + E D + + V +
Sbjct: 188 HHELLSKISVERIREEFVKMCVGPHARSAFQV-FLDTQLSEEVPDFR--GKKEQLSVFPS 244
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
S+ I ++ + I + + ++ + S +
Sbjct: 245 LTFSPSTEASVWAIIAILLKLPNEQIPKFMRDWKNSNQMTRKVEEIVFFFDLLSDHSPSD 304
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+L G +++ + L ++ ++ + + G +++
Sbjct: 305 Y--ELFLAGQDTVMSACDVARIL----GQPVNSEALVDRYVALPIKNHKELVVDGSTLIE 358
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+GI PG +G++L + ++ +E + + +
Sbjct: 359 WGIKPGPSLGDMLAKITEAVVDGKIANDEEAIKNFI 394
>gi|260576142|ref|ZP_05844135.1| Polynucleotide adenylyltransferase region [Rhodobacter sp. SW2]
gi|259021622|gb|EEW24925.1| Polynucleotide adenylyltransferase region [Rhodobacter sp. SW2]
Length = 380
Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats.
Identities = 126/406 (31%), Positives = 191/406 (47%), Gaps = 30/406 (7%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ W + + + L ++ VGG VR++L+ L+V DIDIAT +P+ V +
Sbjct: 2 KISGPWMQAAPTQAVCAALTGAGFRALFVGGCVRNALLGLAVADIDIATDAVPETVTNLA 61
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
+KV+PT I +GT+ +I +ITT R D+ T GR+A V F+ D D+ RRD T
Sbjct: 62 ENAGFKVVPTGIDHGTVTVIAAGIAHEITTFRRDIETHGRHATVAFSTDIADDATRRDLT 121
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-- 181
+NALYA G+V+D +GGL DL R ++F+GDA+ RI EDYLRILRFFRF A YG+ N
Sbjct: 122 MNALYATPDGEVVDPMGGLADLMARQVRFVGDANARITEDYLRILRFFRFHAIYGDPNGG 181
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
ID++GL A G++ LS ERI +E+ KLL A NP A+ M G+ + +
Sbjct: 182 IDAEGLAACAANSAGIETLSCERITAEMRKLLSADNPGPAVAAMARSGVLNAVLPGADDR 241
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+L L + LR + ++ + + R
Sbjct: 242 ALAPLVHLE------GDTPPHWLRRLAVLGGLAQTA------HLRFSRAETTTF-----G 284
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + ++ +L Y G + + AL + D I
Sbjct: 285 HIRDEIATLKPASELGYRLGVALAKDVILARAALFETPPPNAWQ-------DDAIRGAAA 337
Query: 362 LFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
FPL D++ G +G+ L +Q WI+S F L++ L
Sbjct: 338 KFPLRAADLMPALH---GPALGDRLRVLEQAWIDSGFSLTRAQLLA 380
>gi|254470240|ref|ZP_05083644.1| poly(A) polymerase protein [Pseudovibrio sp. JE062]
gi|211960551|gb|EEA95747.1| poly(A) polymerase protein [Pseudovibrio sp. JE062]
Length = 406
Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats.
Identities = 138/415 (33%), Positives = 221/415 (53%), Gaps = 11/415 (2%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M + Q W S + +L + D + VGG VR+SL+ V D+DIA T LPD V+
Sbjct: 1 MTKLQQRGWLDSSAVQRAFDVLEQDGDVARAVGGTVRNSLLGEVVDDVDIACTALPDVVL 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
K IPT + +GT+ ++ + ++T LR D+ T GR+A V F RDW D+ RR
Sbjct: 61 ARADAAGVKAIPTGVDHGTVTLVIESQPIEVTCLREDVETHGRHATVKFGRDWVKDAQRR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
DFT+NALY D+ G++ D +GGL+D NR ++FIGDA RI EDYLRILRFFRFFA YG+
Sbjct: 121 DFTMNALYVDRYGELFDPLGGLDDCLNRHLRFIGDARARIREDYLRILRFFRFFATYGQG 180
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
I++DG A ++ K+GL LS ERI E+ + L A L+A+ M G I + I + +
Sbjct: 181 EINADGYAACVELKEGLSHLSKERITKEVLRTLGAPRVLDALELMEQGVILQLILGE--D 238
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+ +L+++++ + + E + +LR + +S + S ++ R + +
Sbjct: 239 AASARLARLLKLDGLPEAANEPVLR-----LGGVAGAAVSQHLRLSNAQKKRIEVAAEIA 293
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
E+K L +G ++ + N QD + ++L+ +W+
Sbjct: 294 KALRVTGHQTQELKALLVAHGANAVVDGVLTAWM----NGDLQDEAVLRELLAFAQNWEI 349
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
P FPLTG ++ GIP G ++G + +Q W ++ +Q S E+L ++ +
Sbjct: 350 PSFPLTGKMMIAGGIPAGPEMGAAMKLAQQIWASADYQCSAEELMAKVKAAVEDK 404
>gi|323136281|ref|ZP_08071363.1| Polynucleotide adenylyltransferase region [Methylocystis sp. ATCC
49242]
gi|322398355|gb|EFY00875.1| Polynucleotide adenylyltransferase region [Methylocystis sp. ATCC
49242]
Length = 411
Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats.
Identities = 125/411 (30%), Positives = 204/411 (49%), Gaps = 11/411 (2%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D L + + L K ++ +VGGAVRD+L L +ID+ATT LP+ V+ K
Sbjct: 8 LDDPRLATLFAALAKTGGETRVVGGAVRDALFGLPPHEIDLATTALPEDVLAAARDAGLK 67
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+PT I +GT+ I+ F++TTLR D+ TDGR+AKV F D+ D+ RRDFT+NAL
Sbjct: 68 GVPTGIEHGTVTIVVAGTPFEVTTLREDVETDGRFAKVRFGGDFDQDARRRDFTVNALSL 127
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
G++ D GG+ DL R I+FIGDA RI EDYLR+LRFFRF A +GE D +GL
Sbjct: 128 TPDGELHDPTGGIADLEARRIRFIGDAATRIREDYLRVLRFFRFNASHGEGAFDREGLHE 187
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
SI A++ L LS ER+ +E+ KLL A+ + M G+ + I +L ++
Sbjct: 188 SIIARENLARLSRERVRAELVKLLPARRAPEVVRAMSQAGVIEVILGMGYPA---RLERL 244
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI----RYFLISFFNCNFNQ 305
E K D++LR + + + + + L + + + +
Sbjct: 245 AAFEAAQGKKPDAVLR-LAAFAVLTVEDAERLRDRLRLSNDEWSRLSAAARTLAALHGIE 303
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ + ++++ ++ G + + D L+ + P FP+
Sbjct: 304 RPPPVSHLREMLFICGARAAADA---LALAFAESAAAPDDPQWLEAAKYLDENPAPAFPI 360
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G D++ G+ PG+++G +L + +WI + F + + LL + + +
Sbjct: 361 RGADLIARGVAPGRELGAVLKSLQAQWIRAGFPRDPQAVMQLLEEAVGIKE 411
>gi|86358651|ref|YP_470543.1| poly(A) polymerase protein [Rhizobium etli CFN 42]
gi|86282753|gb|ABC91816.1| poly(A) polymerase protein [Rhizobium etli CFN 42]
Length = 377
Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats.
Identities = 139/375 (37%), Positives = 213/375 (56%), Gaps = 6/375 (1%)
Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT 100
M L V DIDIATT+ P V+ + K +PT + +GT+ ++ K F++TTLR+D+ T
Sbjct: 1 MGLPVSDIDIATTLTPQIVLERAAAAGLKAVPTGLQHGTVTLVVDGKPFEVTTLRTDIET 60
Query: 101 DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
DGR+AKV F+ DWKAD+ RRD TINALYAD G+V+D VGGL D+ R I+FIGDA RI
Sbjct: 61 DGRHAKVAFSTDWKADAERRDLTINALYADADGEVVDLVGGLADIEKRNIRFIGDASTRI 120
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED+LRILRFFRFFA+YG D++GL A A+ +K LS+ER+WSE+ KLL A +P
Sbjct: 121 AEDHLRILRFFRFFAYYGSGRPDAEGLKACAAARSKIKTLSAERVWSELRKLLGAADPGR 180
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
A++ M + EI + + +D + ++ E+ W D LLR ++ + + +
Sbjct: 181 ALLWMRQVAVLTEILPESERWGIDAIPSLVATEKALGWAPDPLLRLAAIVP-PEAARLEA 239
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+A + L L ++ +S ++L Y G ++ +LK+ LA+
Sbjct: 240 LAARLKLSNAEAATLKAWATAAPVNDEISPAAFERLLYRNGTDGIMTRLKLALAVARGKA 299
Query: 341 TH-----QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
+ + +++ +WKKP FPL G DV+ G+ G +VG +L + +W+
Sbjct: 300 EGDLGEMARSARLCKLMDRAANWKKPQFPLNGGDVLAAGVASGPRVGELLAVLENQWVEE 359
Query: 396 SFQLSQEDLHHLLRK 410
+F + L L++
Sbjct: 360 NFTSDRTALLARLKE 374
>gi|153812524|ref|ZP_01965192.1| hypothetical protein RUMOBE_02923 [Ruminococcus obeum ATCC 29174]
gi|149831449|gb|EDM86537.1| hypothetical protein RUMOBE_02923 [Ruminococcus obeum ATCC 29174]
Length = 443
Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats.
Identities = 87/440 (19%), Positives = 174/440 (39%), Gaps = 48/440 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S+ IL +L + ++ +VGG VRDS++ + D DI T+ P +V +F + +
Sbjct: 7 SNAEKILHILEENGYEAYVVGGCVRDSILGRNPNDWDITTSASPQQVKELFQ----RTVD 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++ K+ +++TT R D DGR+ K +FT + D RRDFTINA+
Sbjct: 63 TGLQHGTVTVLMDKEGYEVTTYRVDGDYEDGRHPKQVMFTSSLEEDLKRRDFTINAMAYH 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D G+ D+ ++ ++ +GD R ED LRILR RF A G +
Sbjct: 123 PERGLVDLFHGMEDMEHKIVRCVGDPMERFHEDALRILRAVRFSAQLGFTIEEKTKAGIQ 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
A + + + L+ + + Y GI +E + + +
Sbjct: 183 ALAPNLKCVSAERIQTELVKLLVSPHP--DYLRVAYETGITREFLPEFDACMETEQNTPH 240
Query: 251 EAEQVFEW--------KIDSLLRFIVLISW----------------------QDKKSILS 280
V E + D +LR +L+ + +K S
Sbjct: 241 HCYTVGEHILHGLLLVRPDKVLRLTMLLHDIAKPVMRKTDENGRDHFKMHAPEGEKMAKS 300
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ ++ + + + ++ + +++ G+ + L++ A
Sbjct: 301 ILRRLKFDNDTISKVSRLIKYHDDRPMPEMRSVRRAVNRIGEDLFPMYLEVQEADMLAQS 360
Query: 341 THQDTCF----------ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390
++ +V+ + +TG D+++ G PG ++G +L +
Sbjct: 361 EYRREEKSARLKGVAECYHKVVEEKQCVSLKTLAVTGRDLIQAGYKPGPELGEVLKEMLE 420
Query: 391 EWINSSFQLSQEDLHHLLRK 410
+ ++E L + K
Sbjct: 421 HVLEEPSDNTKEKLMEFINK 440
>gi|225630119|ref|YP_002726910.1| tRNA nucleotidyltransferase/poly(A) polymerase [Wolbachia sp. wRi]
gi|225592100|gb|ACN95119.1| tRNA nucleotidyltransferase/poly(A) polymerase [Wolbachia sp. wRi]
Length = 390
Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats.
Identities = 142/400 (35%), Positives = 212/400 (53%), Gaps = 14/400 (3%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + I+ + + ++ +VGG VRDS++ V DID+AT +LP++ ++ K I
Sbjct: 4 DQETSLIIDAIEEFGGEARLVGGCVRDSILQRDVHDIDLATNLLPNQTIKALKLRNIKTI 63
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
PT +++GTI I ++ F+ITTLR D+ DGR+AKV FT +W+AD+ RRDFT NALYAD+
Sbjct: 64 PTGLNHGTITAILNQRSFEITTLRHDVKCDGRHAKVEFTNNWQADASRRDFTFNALYADK 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G + DY GG+ DL+ R + FIG+A RI EDYLRILR FRF A ++ + L
Sbjct: 124 HGHIYDYFGGIEDLKVRRLNFIGNAEDRIKEDYLRILRAFRFHAKICVGDLSDEILNVCK 183
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
K ++ LS ERI EI KLLE +P + M + ++I +E+ + LS +
Sbjct: 184 KHSHMIQNLSGERIRDEILKLLECNDPFPTLKSMQESDVLQKIIP--KEVKCEILSSSLL 241
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
K+ LLR D+ S+ KF + + F N + LS
Sbjct: 242 FGTDALVKLALLLRTT----KNDRLSLGEYVSKFLRLSNKQKKKLLFLLSNDIKTELSEK 297
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
E KK L+G ++ +KI N+ + +S + P FPL+GDD++
Sbjct: 298 EQKKYISLFGRELYCDLVKICGVESGENVD--------EYISFANTFNIPKFPLSGDDLI 349
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
G PGK +G L KQ W +SS+ L++E+L + L
Sbjct: 350 SIGHQPGKSLGRNLELLKQHWEDSSYTLTKEELVLYAKSL 389
>gi|126336363|ref|XP_001374161.1| PREDICTED: similar to TRNA nucleotidyl transferase, CCA-adding, 1
[Monodelphis domestica]
Length = 436
Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats.
Identities = 123/404 (30%), Positives = 208/404 (51%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L N+ L +K + + I GGAVRD L QD+D ATT P ++ +F +
Sbjct: 42 LFTEGLKNLAELFSKEKYELRIAGGAVRDLLNGTKPQDVDFATTATPAQMKEMFQAAGIR 101
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D+ITDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 102 LINNKGEKHGTITARLHEENFEITTLRIDVITDGRHAEVEFTTDWQKDAERRDLTINSMF 161
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDG 186
G + D+ G DL+N+ ++F+GD RI EDYLRILR+FRF+ ++ DS
Sbjct: 162 LGFDGTLFDFFNGYEDLKNKKVRFVGDPKERIQEDYLRILRYFRFYGRIADRPGTHDSKT 221
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + + + MY+ + + L SL++
Sbjct: 222 LEAIKENAKGLAGISGERIWVELKKILVGNHANHLVHLMYDLDVAHYLGLPA-AGSLEEF 280
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ V + + K +LL + + + ++ + + +E + + +
Sbjct: 281 NTVSKNVETLSPKPMTLLASLFKVQDD----VKNLDLRLKIAKEEKNLGLFIVKH--RKD 334
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + + Y D V+ ++ L L +Q + +L ++ W P FP++
Sbjct: 335 LIKAADSSEPLKPYQDFVLDSREPDTLGRICELLKYQGE---VDLLKEMQQWSIPPFPVS 391
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G DV K GI GK++G IL +++W S +++ +E+L ++K
Sbjct: 392 GHDVRKVGISSGKEIGLILQQLREQWKKSGYKMDKEELLSFVKK 435
>gi|312865315|ref|ZP_07725543.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Streptococcus downei F0415]
gi|311099426|gb|EFQ57642.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Streptococcus downei F0415]
Length = 401
Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats.
Identities = 94/400 (23%), Positives = 173/400 (43%), Gaps = 18/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+N + D+DIAT+ P IF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPQETKAIFE----RTVDI 67
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R V F R + D RRDFT+NA +
Sbjct: 68 GIEHGTVLVLENGREYEVTTFRTEDVYVDFRRPKSVSFVRSLEEDLKRRDFTVNAFALAK 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+VID GL DL + ++ +G A R ED LRI+R RF A I+ VA
Sbjct: 128 DAQVIDLFDGLKDLEAQVLRAVGKAQERFSEDALRIMRGLRFAASLDF-AIEDQTFVAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-EISLDQLSQVI 250
L+ +S ER + E +KLL A + + + + + + E+ L L
Sbjct: 187 TYAPLLEKISVERSFIEFDKLLTAPHWKKGLEALIEIQAYDYLPDLSKTEVGLRSLLTDF 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + +F+ + + ++ +D +S L K S ++ L++ + NQ
Sbjct: 247 KDDFLFKTSEQAWAALCLSLNIKDCRSFLKKWKTSSHFQKTVSDLVAIYRLRMNQGHDK- 305
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y YG + + L D I + + ++ K + G +
Sbjct: 306 ----QSIYRYGKE----LAHLAENLRQGQGQAVDFDRIDHLDASLLIHHKKDIVVNGGIL 357
Query: 371 V-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ + G+ PG +G IL + + +E + +R
Sbjct: 358 ISQLGLKPGPALGEILDQIETAIVEGDLANEKEAILAFVR 397
>gi|66730382|ref|NP_001019432.1| tRNA-nucleotidyltransferase 1, mitochondrial [Rattus norvegicus]
gi|66267368|gb|AAH95841.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Rattus norvegicus]
gi|111493965|gb|AAI05613.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Rattus norvegicus]
Length = 434
Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats.
Identities = 118/404 (29%), Positives = 204/404 (50%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QD+D ATT P + +F +
Sbjct: 40 LFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTEMKEMFQAAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNKGEKHGTITARLHEENFEVTTLRIDVSTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 160 LGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDRET 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + + I +Y+ + I L +L++
Sbjct: 220 LEAIAENAKGLAGISGERIWVELKKILTGDHVNHLIHLIYDLDVASHIGLPANA-NLEEF 278
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++V + + F K ++L + + + + + + +E + + +
Sbjct: 279 NKVSKNVEGFSPKPMTVLASLFKVQDD----VTKLDLRLKISKEEKNLGLFIVKN--RKD 332
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + + Y D V+ ++ A L +Q + L ++ W P FP++
Sbjct: 333 LIKATDSSEPLKPYQDFVIDSREPDATARVCELLKYQGEHAL---LKEMQQWSVPPFPVS 389
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 390 GHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433
>gi|148666981|gb|EDK99397.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_b [Mus
musculus]
Length = 440
Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats.
Identities = 116/404 (28%), Positives = 203/404 (50%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QD+D ATT P ++ +F +
Sbjct: 46 LFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIR 105
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 106 MINNKGEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 165
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 166 LGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDRPGDHDHET 225
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + +N ++H+ +L++
Sbjct: 226 LEAIAENAKGLAGISGERIWVELKKILTGDH-VNHLIHLIYDLGVAPHIGLPANANLEEF 284
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++V + + F K +LL + + + + + + +E + + +
Sbjct: 285 NKVSKNVEGFSPKPMTLLASLFKVQDD----VTKLDLRLKISKEEKNLGLFIVKN--RKD 338
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + + Y D V+ ++ A L +Q + L ++ W P FP++
Sbjct: 339 LIKATDSSEPLKPYQDFVIDSREPDATARVCELLKYQGEHGL---LKEMQQWSVPPFPVS 395
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +++ +++L ++K
Sbjct: 396 GHDIRKVGISSGKEIGALLQQLREQWKKSGYRMEKDELLSYIKK 439
>gi|99082731|ref|YP_614885.1| polynucleotide adenylyltransferase region [Ruegeria sp. TM1040]
gi|99039011|gb|ABF65623.1| Polynucleotide adenylyltransferase region [Ruegeria sp. TM1040]
Length = 386
Score = 212 bits (539), Expect = 9e-53, Method: Composition-based stats.
Identities = 121/410 (29%), Positives = 187/410 (45%), Gaps = 28/410 (6%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ W H + L + VGG VR++L+ V D+D++T+ P V
Sbjct: 2 KIDEPWLHSPATRKLCDALTSAGAEIYFVGGCVRNALLGEPVSDLDLSTSATPQYVTEAA 61
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
+ KVIPT I +GT+ ++ F+ITT R D+ TDGR A V F + D+ RRDFT
Sbjct: 62 EQAGLKVIPTGIEHGTVTVVVDGDPFEITTFRRDVATDGRRAVVAFATEILEDARRRDFT 121
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181
+NALYA G+++D + G DLR R ++FIGDA RI EDYLRILR+FRF + YG+
Sbjct: 122 MNALYARPTGEIVDPLSGFEDLRARRVRFIGDATRRIQEDYLRILRYFRFHSWYGDAEAG 181
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
D + L A ++GL LS ER+ +EI KLL + NP ++ M G+ + +
Sbjct: 182 FDPEALAAIAATQEGLDHLSRERVGAEIMKLLSSSNPAPSVATMRQIGVLAHVLPGADDR 241
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+L L + E + ++ L + +D ++ L + +
Sbjct: 242 ALAPLIHL---EADLPAEAETRL---AALGGEDLQNTLRL-----------SKASAARVT 284
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
++ Y G + + AL + + + SDI
Sbjct: 285 LLRTLATGTATAAEIAYRQGVDTAKRAMMLRSALFEMPV-------LPDLESDIALGAVA 337
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
FP++ D++ + G +G L + EWI S FQ +E L L L
Sbjct: 338 EFPISAKDLMPH--VQGAALGRALRTLEAEWIRSGFQSDRETLLKRLPDL 385
>gi|33859692|ref|NP_081572.1| CCA tRNA nucleotidyltransferase 1, mitochondrial [Mus musculus]
gi|37537798|sp|Q8K1J6|TRNT1_MOUSE RecName: Full=CCA tRNA nucleotidyltransferase 1, mitochondrial;
AltName: Full=mitochondrial tRNA nucleotidyl
transferase, CCA-adding; Short=mt CCA-adding enzyme;
Short=mt tRNA CCA-diphosphorylase; Short=mt tRNA
CCA-pyrophosphorylase; Short=mt tRNA
adenylyltransferase; Flags: Precursor
gi|21619331|gb|AAH31764.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Mus musculus]
gi|74177896|dbj|BAE39032.1| unnamed protein product [Mus musculus]
gi|74220479|dbj|BAE31459.1| unnamed protein product [Mus musculus]
gi|148666980|gb|EDK99396.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_a [Mus
musculus]
Length = 434
Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats.
Identities = 116/404 (28%), Positives = 203/404 (50%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QD+D ATT P ++ +F +
Sbjct: 40 LFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNKGEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 160 LGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDRPGDHDHET 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + +N ++H+ +L++
Sbjct: 220 LEAIAENAKGLAGISGERIWVELKKILTGDH-VNHLIHLIYDLGVAPHIGLPANANLEEF 278
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++V + + F K +LL + + + + + + +E + + +
Sbjct: 279 NKVSKNVEGFSPKPMTLLASLFKVQDD----VTKLDLRLKISKEEKNLGLFIVKN--RKD 332
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + + Y D V+ ++ A L +Q + L ++ W P FP++
Sbjct: 333 LIKATDSSEPLKPYQDFVIDSREPDATARVCELLKYQGEHGL---LKEMQQWSVPPFPVS 389
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +++ +++L ++K
Sbjct: 390 GHDIRKVGISSGKEIGALLQQLREQWKKSGYRMEKDELLSYIKK 433
>gi|16416453|dbj|BAB70663.1| tRNA-nucleotidyltransferase [Mus musculus]
Length = 434
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 115/404 (28%), Positives = 202/404 (50%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QD+D ATT P ++ +F +
Sbjct: 40 LFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNKGEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+ RF+ + D +
Sbjct: 160 LGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYIRFYGRIVDRPGDHDHET 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + +N ++H+ +L++
Sbjct: 220 LEAIAENAKGLAGISGERIWVELKKILTGDH-VNHLIHLIYDLGVAPHIGLPANANLEEF 278
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++V + + F K +LL + + + + + + +E + + +
Sbjct: 279 NKVSKNVEGFSPKPMTLLASLFKVQDD----VTKLDLRLKISKEEKNLGLFIVKN--RKD 332
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + + Y D V+ ++ A L +Q + L ++ W P FP++
Sbjct: 333 LIKATDSSEPLKPYQDFVIDSREPDATARVCELLKYQGEHGL---LKEMQQWSVPPFPVS 389
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +++ +++L ++K
Sbjct: 390 GHDIRKVGISSGKEIGALLQQLREQWKKSGYRMEKDELLSYIKK 433
>gi|297717904|gb|ADI50095.1| hypothetical protein [Candidatus Odyssella thessalonicensis L13]
Length = 379
Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats.
Identities = 121/396 (30%), Positives = 194/396 (48%), Gaps = 29/396 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S L++I + + VGG VRD+L+ L+ DID+A+ + P++ + + + Y VIP
Sbjct: 6 SPLLSIKKIYDDAGFPLRFVGGCVRDTLLGLTPNDIDLASPLPPEQGLALLAAQGYTVIP 65
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
T + +GT ++ K ++ITTLR D+ TDGR A + +T W+ D+ RRDFTINALY D
Sbjct: 66 TGMEHGTFTLVIDKVPYEITTLRRDVATDGRRATIAYTDKWEEDAARRDFTINALYMDFD 125
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G + DY G DL+ T++FIG A RI EDYLRILRFFRF + ++ + + K
Sbjct: 126 GTIYDYANGQQDLKKGTVRFIGQAADRIQEDYLRILRFFRFHQRFSKQPVSCELKAIFQK 185
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+K LS+ERI E LLE+ NP ++ + + + ++ LD L +++
Sbjct: 186 FSPQIKTLSAERITKEFLLLLESSNP---LLELSIMDECQILPQFLESYELDNLKLLLDM 242
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E +L RF + + + L + N + +S
Sbjct: 243 EMSVSAAPSALRRFHA---------LKCSSHQLRLSNKQ---SKYLAALNLLEAEMSSHS 290
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ L Y YG ++ + Q++ L+ P FPL G D++
Sbjct: 291 LFYLAYKYGLPEILDIFLVR----------QESKRWLE----FKSLVIPPFPLNGQDLIT 336
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
GI PG ++G L + +W S ++L++E+L L
Sbjct: 337 IGIKPGARLGKALNDAEYQWAASEYKLTKENLLQYL 372
>gi|256826984|ref|YP_003150943.1| domain HDIG-containing protein [Cryptobacterium curtum DSM 15641]
gi|256583127|gb|ACU94261.1| uncharacterized domain HDIG-containing protein [Cryptobacterium
curtum DSM 15641]
Length = 451
Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats.
Identities = 85/447 (19%), Positives = 150/447 (33%), Gaps = 48/447 (10%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + I+ L + ++ +VGG VRD L+ + DIDIA++ +R+
Sbjct: 5 LMNPPVQRIIETLEQAGVEAWLVGGCVRDGLIGRPIHDIDIASSASWQETVRLCQAAGMT 64
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINAL 127
+ T +GT+ II F++TT R + DGR+ + D RRDFTINA+
Sbjct: 65 TVETGTQHGTVTIIADGTPFEVTTFRGEGQYQDGRHPEYVFPVDSIDEDLARRDFTINAM 124
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ + D GG D + I+ +G A R ED LRILR RF + G
Sbjct: 125 AWNPSRGLHDPYGGQADAAAKIIRAVGKAQQRFDEDALRILRGARFASQLGFTLETETAH 184
Query: 188 VASIKAKKGLKILSSERIWS-------EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+ A +I + + +
Sbjct: 185 AMNEAAHNLARISAERIAAEMDALLKGSFVHDALMNCAPVICAAIPELSCTCGFDQQSKY 244
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK----------------------SI 278
S D + A Q K SL+R+ + K
Sbjct: 245 HSFDVYEHLAWATQQTPKK--SLVRWCAFLHDIGKPATMVVDEAGAGHFPDHAAVGEAMA 302
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
++ K+ P + + + K++ + AL
Sbjct: 303 RNLLKRLRFPTRFIHDACLLIRYHDIPIAPTPRATKRMLQRL--DGREDLFRDLCALKRA 360
Query: 339 NLTHQDTCF-------------ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385
+ + + ++ + + + G+DV+K G+P G VG L
Sbjct: 361 DSLAHAPQWRGGTKAADAAEKCLDAIIEQNAAFSRSALAINGNDVIKLGVPAGPAVGKAL 420
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLI 412
I+ + + ++ L L+R+L+
Sbjct: 421 DAALNAVIDETRRNERDSLLDLVRELM 447
>gi|195389791|ref|XP_002053557.1| GJ23286 [Drosophila virilis]
gi|194151643|gb|EDW67077.1| GJ23286 [Drosophila virilis]
Length = 454
Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 125/411 (30%), Positives = 204/411 (49%), Gaps = 18/411 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L +++L K + I GGAVRD LMN+ +DID ATT PD++ +F+K +
Sbjct: 45 IFTPELKALVALFKKYNYELRIAGGAVRDILMNIKPKDIDFATTATPDQMKEMFTKEEVR 104
Query: 70 VIP-TSISYGTIKII-CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI K+ F++TTLR D+ TDGR+A VVFT DW+ D+ RRD TIN++
Sbjct: 105 MINAKGEKHGTITPRIHNKENFEVTTLRIDVRTDGRHADVVFTTDWQLDANRRDLTINSM 164
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY--GEKNIDSD 185
+ G V DY G +D++ R + F+GDA RI EDYLRILR+FRF+ ++ D
Sbjct: 165 FLGFDGTVYDYFYGYDDVQQRRVVFVGDADVRIKEDYLRILRYFRFYGRISADAQSHDKP 224
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L A GL +S ERIW+E+ K++ L ++ M+N + ++ L Q ++ +
Sbjct: 225 TLAAIKANAAGLSRISGERIWAELQKIVVGNFGLELMLEMHNCDLLEQCGLPTQP-NIAE 283
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
++ + FE +L L+ ++ L K S ++ F Q
Sbjct: 284 FKRLCGDLKRFEQPHYPILYLTALLHTVEQAMKLHERLKLSAYERD----LALFITQQRQ 339
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ S + + + + + L Y N L++ + + W+ P P+
Sbjct: 340 RVDSDYNTLRDYQKLCLQPYAKRDYVEQLLKYANK--------LELYNQLKAWQTPNLPI 391
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G+ + YG+ GK++G +L + W +S F L+ E L L ++ Q
Sbjct: 392 NGNTLKGYGLV-GKRMGLVLSELRLLWADSDFTLTSEQLLESLPAILERLQ 441
>gi|84685765|ref|ZP_01013661.1| polyA polymerase family protein [Maritimibacter alkaliphilus
HTCC2654]
gi|84665858|gb|EAQ12332.1| polyA polymerase family protein [Rhodobacterales bacterium
HTCC2654]
Length = 387
Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 127/408 (31%), Positives = 199/408 (48%), Gaps = 27/408 (6%)
Query: 1 MV-SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59
M + + W +D ++ ++L ++ VGG VR++L+ V D+DI+T P+ V
Sbjct: 1 MTDARITETWLYDPVAQSVCAMLTSAGYQAHFVGGCVRNALIGAPVTDLDISTNAHPETV 60
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
++ K + +PT I +GT+ ++ F++TT R D+ TDGR A V F + D+ R
Sbjct: 61 SKLARKAGFHAVPTGIDHGTVTVVADGHPFEVTTWRKDVETDGRRAVVAFADRLEDDARR 120
Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
RDFT+NALYA G++ID +GGL DL R ++FI DAH RI EDYLRILRFFRF+A YG+
Sbjct: 121 RDFTMNALYAAPDGQIIDPLGGLQDLLARKVRFIDDAHDRIREDYLRILRFFRFYAWYGD 180
Query: 180 KN--IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+ +D D L A + +G+ LS ER+ SE+ KLL A +P ++ M G+ I D
Sbjct: 181 ADAGLDPDALTAISELSEGIDTLSRERVGSEVVKLLAAPDPAPSVAAMAASGVLARIMPD 240
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+ L ++ EQ D++ R + ++ D K L L +
Sbjct: 241 LNP---KALPILVHFEQDRGVAPDAM-RRLAVLGGCDHKDA------LRLSNLDARRLDT 290
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
S + L Y G V + + AL +
Sbjct: 291 LLEHR-----GSTEKPAALGYRLGADVARDAVLVNAALMETPPPD-------DFIDACSA 338
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+ P+T +D++ G ++G L + EWI+S F+L++E L
Sbjct: 339 GSHAVLPVTANDLMPRF--QGAELGARLKALETEWIDSGFKLTREQLL 384
>gi|295426284|ref|ZP_06818944.1| poly A polymerase [Lactobacillus amylolyticus DSM 11664]
gi|295064023|gb|EFG54971.1| poly A polymerase [Lactobacillus amylolyticus DSM 11664]
Length = 398
Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 95/398 (23%), Positives = 170/398 (42%), Gaps = 16/398 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
D + +L +L + ++ VGG+VRD L+ + D+DIAT+ P+ V F+ K I T
Sbjct: 13 DAMPVLKILEQAGYEAYFVGGSVRDVLLGRQIHDVDIATSAYPEEVKEQFA----KTIDT 68
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ITT R++ R V F ++ D RRDFTINAL +
Sbjct: 69 GIKHGTVTVLYNGNSYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMNT 128
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+++D GL+DL+ + I+ +GD R ED LR++R RF + + +++ + A
Sbjct: 129 DGQILDLFDGLSDLKKKVIRAVGDPEKRFHEDALRMMRAVRFMSQL-KFDLEENTQKAIE 187
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ LK +S ERI E K+ N A + E D +L V
Sbjct: 188 DHHQLLKKISVERIRDEFVKMGLGSNAREAFQV-FLDTKLSEDVPDF--AGKSELLSVFP 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
Q SL I+++ I + + + + + +
Sbjct: 245 QLQFSPALETSLWSIIIILLKIQNDKIGTFMRDWKNSNAMTNEVEQIVSFFDVLSDHVPG 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + G K ++ + + L D+ ++ + + G ++
Sbjct: 305 DY--ELFEIGKKNLLNTIDVAHIL----GQPVDSEALVDRYLALPIKDTSELAVDGRFLI 358
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ GI PG K+G +L KQE + + + S+ + L
Sbjct: 359 ENGIRPGPKLGQLLEEIKQEVVAGNLENSEAAIGEFLE 396
>gi|256851142|ref|ZP_05556531.1| tRNA adenylyltransferase [Lactobacillus jensenii 27-2-CHN]
gi|260660566|ref|ZP_05861481.1| tRNA adenylyltransferase [Lactobacillus jensenii 115-3-CHN]
gi|282934524|ref|ZP_06339778.1| tRNA adenylyltransferase [Lactobacillus jensenii 208-1]
gi|297206009|ref|ZP_06923404.1| tRNA adenylyltransferase [Lactobacillus jensenii JV-V16]
gi|256616204|gb|EEU21392.1| tRNA adenylyltransferase [Lactobacillus jensenii 27-2-CHN]
gi|260548288|gb|EEX24263.1| tRNA adenylyltransferase [Lactobacillus jensenii 115-3-CHN]
gi|281301417|gb|EFA93707.1| tRNA adenylyltransferase [Lactobacillus jensenii 208-1]
gi|297149135|gb|EFH29433.1| tRNA adenylyltransferase [Lactobacillus jensenii JV-V16]
Length = 396
Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats.
Identities = 85/396 (21%), Positives = 166/396 (41%), Gaps = 16/396 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ ++ L + ++ VGG+VRD L+N + D+DIAT+ P+ V ++F + I T
Sbjct: 13 ALPVVQTLTQAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPEEVKQLFE----RSIDTG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ R V F ++ + D RRDFTINAL D+
Sbjct: 69 IQHGTVTVLYNDDSYEITTFRTESGYQDYRRPDHVEFVQNLEEDLKRRDFTINALAMDEY 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G + D GL+DL IK +GD R ED LR++R RF + + +++ A
Sbjct: 129 GNIHDLFNGLDDLNQGLIKAVGDPEKRFNEDALRMMRAVRFMSQL-KFSLEEKTRQAICD 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ L +S ERI E K+ + +A + E D + + V +
Sbjct: 188 HHELLSKISVERIREEFVKMCVGPHARSAFQV-FLDTQLSEEVPDFR--GKKEQLSVFPS 244
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
S+ I ++ + I + + + ++ + S +
Sbjct: 245 LTFSPSTEASVWAIIAILLKLPNEQIPAFMRDWKNSNQMARNVEEIVFFFDLLSDHSPSD 304
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+L G +++ + L ++ ++ + + G +++
Sbjct: 305 Y--ELFLAGQDTVMSACDVARIL----GQPVNSEAMIDRYVALPIKNNKELVIDGSTLIE 358
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+GI PG +G +L + ++ +E + + +
Sbjct: 359 WGIKPGPSLGEMLAKITEAVVDGKVANEEEAIKNFI 394
>gi|30750040|pdb|1OU5|A Chain A, Crystal Structure Of Human Cca-Adding Enzyme
gi|30750041|pdb|1OU5|B Chain B, Crystal Structure Of Human Cca-Adding Enzyme
Length = 448
Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats.
Identities = 118/404 (29%), Positives = 199/404 (49%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QDID ATT P ++ +F +
Sbjct: 54 LFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIR 113
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 114 MINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 173
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 174 LGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPET 233
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + +N ++H+ SL++
Sbjct: 234 LEAIAENAKGLAGISGERIWVELKKILVGNH-VNHLIHLIYDLDVAPYIGLPANASLEEF 292
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+V + F K +LL + + + + + + +E + + +
Sbjct: 293 DKVSKNVDGFSPKPVTLLASLFKVQDD----VTKLDLRLKIAKEEKNLGLFIVKN--RKD 346
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + Y D ++ ++ L +Q + L ++ W P FP++
Sbjct: 347 LIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCL---LKEMQQWSIPPFPVS 403
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 404 GHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 447
>gi|49618903|gb|AAT68036.1| tRNA nucleotidyl transferase-like [Danio rerio]
Length = 405
Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats.
Identities = 110/399 (27%), Positives = 196/399 (49%), Gaps = 13/399 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L+ + + K + + I GGAVRD L +D+D ATT P+ + +F +
Sbjct: 11 LFTDGLVGLAEIFQKNQFELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKSMFQTAGVR 70
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 71 MINNKGEKHGTITARLHEENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMF 130
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDG 186
G + DY G DL+NR ++F+G A RI EDYLRILR+FRF+ + +
Sbjct: 131 LGLDGTLYDYFQGYEDLKNRKVRFVGSASLRIQEDYLRILRYFRFYGRVAAEPGQHEPET 190
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + +GL +S ERIW E+ K+L + + + + + + ++++
Sbjct: 191 LEAIRENARGLAGISGERIWVELKKMLVGNHAGHLLE-LVYELGLAQYTGLPADGDVEEM 249
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
QV + V K ++L + + + + ++ ++ + RE + + +
Sbjct: 250 KQVWQRAHVSSPKPMTVLAALF----RKQADVENLDQRLKVSREEKNLGLFLVKY--RRD 303
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + Y D + ++ + L +Q ++L ++ W P FP++
Sbjct: 304 LVKGHDEHDTMKPYTDFITDSREPDTQSKVLELLKYQGEN---KLLDELRRWSIPRFPVS 360
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
G D+ K G GK++G IL + W S +Q+S+++L
Sbjct: 361 GHDLRKLGYTSGKEIGTILQELRDMWKKSRYQMSKDELL 399
>gi|81428615|ref|YP_395615.1| polynucleotide adenyltransferase [Lactobacillus sakei subsp. sakei
23K]
gi|123564233|sp|Q38WX5|CCA_LACSS RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|78610257|emb|CAI55306.1| Polynucleotide adenyltransferase [Lactobacillus sakei subsp. sakei
23K]
Length = 397
Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats.
Identities = 91/398 (22%), Positives = 167/398 (41%), Gaps = 14/398 (3%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + IL + ++ VGG+VRD+L+ L + D+DIAT+ P + +IF + + T
Sbjct: 12 EALPILEQIEAAGFEAYFVGGSVRDNLLGLPIHDVDIATSAYPAEIKQIFK----RTVDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ I+ +++TT R++ R V F R + D RRDFTINAL
Sbjct: 68 GIQHGTVMILDHGNGYEVTTFRTETGYQDFRRPDSVTFVRSLEEDLKRRDFTINALAMRA 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G++ID G+ DL+ I+ +G A R ED LR++R RF + G ++ A
Sbjct: 128 DGEIIDLFDGIADLKAHKIRAVGVADERFHEDALRMMRAVRFESQLGF-SVTETTQAAIE 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
K L+ ++ ERI E KL++ N + + D+ + L L ++
Sbjct: 187 KHAALLEKIAIERIHVEFMKLMQGIERQNGLRT-FIDTGLYRYCPDLAD-QLLALERLTA 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
++ + + Q K + ++ + + K L+
Sbjct: 245 LPTEQLHDESAVWLVVTYLLGQTPAQAGRFLKHWKSANDVIDAVKAGL--VLLPKLLTAT 302
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y G V++ L+I + + D L+ + +K + G ++
Sbjct: 303 ADQWDLYQAGQAVLVISLQIAQMVTTATIPTAD---WLERYDRLQIKQKADLAINGQILM 359
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ G PG +G L +++ + + E L +
Sbjct: 360 QNGFQPGPILGKALAILERKVVLDELPNTTEALLKAAK 397
>gi|45360665|ref|NP_989006.1| tRNA nucleotidyl transferase, CCA-adding, 1 [Xenopus (Silurana)
tropicalis]
gi|38174205|gb|AAH61356.1| tRNA nucleotidyl transferase, CCA-adding, 1 [Xenopus (Silurana)
tropicalis]
Length = 405
Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats.
Identities = 122/402 (30%), Positives = 200/402 (49%), Gaps = 13/402 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L + ++ + I GGAVRD L D+D ATT PD++ +F K +
Sbjct: 11 LFTDGLKTLANIFANERHELRIAGGAVRDLLSGKQPHDVDFATTATPDQMKDMFLKQGVR 70
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GT+ + F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 71 LINNKGEKHGTVTARINDQNFEITTLRVDVQTDGRHAEVEFTTDWETDAERRDLTINSMF 130
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDG 186
G + DY G DL+N +KF+GD+ RI EDYLRILR+ RF+ +++ S
Sbjct: 131 LGFDGTLYDYFNGYEDLKNHCVKFVGDSSQRIQEDYLRILRYLRFYGRISKRSGAHTSGT 190
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + GL+ +S ERIW E+ K+LE + + + +Y G+ + L + +L++
Sbjct: 191 LDAIKENASGLRGISGERIWVELKKILEGNHVNHLMQIIYELGVAPHVGLP-KGGNLEEF 249
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++V E K +LL + + +++ K + + FL+ ++
Sbjct: 250 AKVCERSHRMSPKPMTLL-TALFSNTDHVQNLDLRLKISKEEKNLALFLLQQRRELTAER 308
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
T + P Y+ + A KI L Y Q+ ++ W P FP++
Sbjct: 309 TDAAPLKPFKDYVVDSREPDAHKKISELLKYQGE--------EQLFREMEGWTLPRFPVS 360
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G D+ + GI GK +G IL ++ W S +Q S+E+L + +
Sbjct: 361 GHDLRRMGISSGKDIGRILQELREHWKESGYQASKEELLNRV 402
>gi|209966674|ref|YP_002299589.1| polyA polymerase family protein [Rhodospirillum centenum SW]
gi|209960140|gb|ACJ00777.1| polyA polymerase family protein [Rhodospirillum centenum SW]
Length = 424
Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats.
Identities = 121/404 (29%), Positives = 187/404 (46%), Gaps = 10/404 (2%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+L L + ++ VGG VRD+++ D+DIAT + PD VMR + +V+PT
Sbjct: 17 QARLVLQALMRTGQEARFVGGCVRDAVLGQEADDVDIATPLPPDEVMRRLKQDGIRVVPT 76
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
I +GT+ I F+ITTLR D+ T GR+A+V FT DW D+ RRDFT NAL +G
Sbjct: 77 GIRHGTVTAIRDGHAFEITTLRRDVETYGRHARVEFTDDWLEDARRRDFTFNALSLSSEG 136
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+ D GGL DL ++F+GDA RI ED LRILR+FRF A +G+ +D D + A
Sbjct: 137 DLYDPFGGLADLSAGRVRFVGDAEARIREDVLRILRYFRFHARFGKGGLDDDAIAACAAQ 196
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
L LS ER+ E+ +L + M GI + + +D L+ + E
Sbjct: 197 APLLPTLSGERVREELLRLFATDRAVETWRLMLERGIIQHLLPQATR--IDTLAALDRLE 254
Query: 254 QVFEW--KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ + L + + + + L++A + L R L+
Sbjct: 255 WMVGEAGPLTQLAALLPRGGEEGRAAALAVADRMRLSNAQRDRLLVLCAPPLAVDAGLDV 314
Query: 312 EIKKL-FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
++ G ++ L + A IL+ L++ W+ FPL G D
Sbjct: 315 RGRRRALQTVGPELFRDLLLLDTA-----TRGIPAFEILESLAEAAAWRVIPFPLKGQDA 369
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
V G+P G VG +L + W ++ +ED L + +A+
Sbjct: 370 VDRGVPQGPAVGRLLEAVEGWWAGRDYRPGREDCLAELERRLAA 413
>gi|270291287|ref|ZP_06197509.1| CCA-adding enzyme [Pediococcus acidilactici 7_4]
gi|270280133|gb|EFA25969.1| CCA-adding enzyme [Pediococcus acidilactici 7_4]
Length = 402
Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats.
Identities = 100/403 (24%), Positives = 171/403 (42%), Gaps = 20/403 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ N+L + + ++ VGG+VRD+L+ + D+DIAT+ P + +IF + +
Sbjct: 12 EEARNVLQQIEEAGYEAYFVGGSVRDTLLGKPIHDVDIATSAYPAEIKQIFK----RTVD 67
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + ++ITT R++ R +V F R K D +RRDFTINA
Sbjct: 68 TGIEHGTVMVLTGEHSYEITTFRTESGYQDFRRPDQVTFVRSLKEDLMRRDFTINAFALR 127
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ VID GL DL+ I+ +GD R ED LR++R RF + I+ L A
Sbjct: 128 EDRTVIDVFDGLTDLKQHKIRAVGDPKARFHEDALRMMRGVRFASQLDFV-IEPQTLAAI 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-LDQLSQV 249
L +S ER E K++ NP + M + + + + L +L
Sbjct: 187 KMNSSLLAKISVERTLVEFQKMMLGTNPNRGLADMVATRLHEYCPGLAGKGAVLQELLAY 246
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
++ E +I +LL +++ + I K++ E+ + + S
Sbjct: 247 PLSQLENETQIWALLAWMLQLRG---AQINRFLKQWKTSNELIRHVTATVRVLSMLD--S 301
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + + G + +++ L + D L + +TG D
Sbjct: 302 TGVDRIILFEAGANNVANAVRVAQILGH------DAQGWLDTYQTLQIKSPKELAVTGKD 355
Query: 370 VVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
++ I PG ++G IL K IN E L RKL
Sbjct: 356 LIANQIITPGPQMGRILNSLKAMVINDQLPNQPEALFTAARKL 398
>gi|157423165|gb|AAI53772.1| LOC398421 protein [Xenopus laevis]
Length = 419
Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats.
Identities = 123/408 (30%), Positives = 202/408 (49%), Gaps = 25/408 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L + +L K + I GGAVRD L D+D ATT P+++ +F K +
Sbjct: 25 LFTDGLKTLANLFAKDRYELRIAGGAVRDLLSGKQPHDVDFATTATPEQMKDMFLKDGVR 84
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I ++GT+ + F+ITTLR DL TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 85 LINNKGETHGTVTARINDQNFEITTLRVDLHTDGRHAEVEFTTDWEIDAERRDLTINSMF 144
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDG 186
G + DY G DL+NR ++F+GD RI EDYLRILR+ RF+ E++ S
Sbjct: 145 LGFDGTLYDYFNGYEDLKNRCVRFVGDPSQRIQEDYLRILRYLRFYGRISERSGAHTSGT 204
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + GL+ +S ERIW E+ K+LE + + I +Y+ G+ + L ++ +L++
Sbjct: 205 LDAVRENASGLRGISGERIWVELKKILEGNHVNHLIQIIYDLGVAPHVGLP-EDGNLEEF 263
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++V E + K +LL + + + + + + +E + +
Sbjct: 264 ARVCERSRRMSPKPMTLLTALFSNTD----HVQKLDLRLKISKEEKNLALFLLQQRRELT 319
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV------LSDIIHWKK 360
D + K ++ TH+ C +L+ ++ W
Sbjct: 320 AERT-----------DAAPLKPFKDYVVDSREPDTHRKICELLKYQGEEQFFREMEGWTL 368
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
P FP++G D+ + GI GK++G IL K+ W S FQ S+E+L + +
Sbjct: 369 PRFPVSGHDLRRMGISSGKEIGRILQELKEHWKGSGFQTSKEELLNRV 416
>gi|166158076|ref|NP_001107446.1| hypothetical protein LOC100135294 [Xenopus (Silurana) tropicalis]
gi|156230028|gb|AAI52184.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Danio rerio]
gi|163915741|gb|AAI57591.1| LOC100135294 protein [Xenopus (Silurana) tropicalis]
Length = 405
Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats.
Identities = 110/399 (27%), Positives = 196/399 (49%), Gaps = 13/399 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L+ + + K + + I GGAVRD L +D+D ATT P+ + +F +
Sbjct: 11 LFTDGLVGLAEIFQKSQFELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKSMFQTAGVR 70
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 71 MINNKGEKHGTITARLHEENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMF 130
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDG 186
G + DY G DL+NR ++F+G A RI EDYLRILR+FRF+ + +
Sbjct: 131 LGLDGTLYDYFQGYEDLKNRKVRFVGSASLRIQEDYLRILRYFRFYGRVAAEPGQHEPET 190
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + +GL +S ERIW E+ K+L + + + + + + ++++
Sbjct: 191 LEAIRENARGLAGISGERIWVELKKMLVGNHAGHLLE-LVYELGLAQYTGLPADGDVEEM 249
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
QV + V K ++L + + + + ++ ++ + RE + + +
Sbjct: 250 KQVWQRAHVSSPKPMTVLAALF----RKQADVENLDQRLKVSREEKNLGLFLVKY--RRD 303
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + Y D + ++ + L +Q ++L ++ W P FP++
Sbjct: 304 LIKGHDEHDTMKPYTDFITDSREPDTQSKVLELLKYQGEN---KLLDELRRWSIPRFPVS 360
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
G D+ K G GK++G IL + W S +Q+S+++L
Sbjct: 361 GHDLRKLGYTSGKEIGTILQELRDMWKKSRYQMSKDELL 399
>gi|295109530|emb|CBL23483.1| uncharacterized domain HDIG [Ruminococcus obeum A2-162]
Length = 441
Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats.
Identities = 91/440 (20%), Positives = 170/440 (38%), Gaps = 48/440 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S+ IL +L + ++ +VGG VRDS++ + D DI T+ P++V +F + +
Sbjct: 7 SNAEKILHILEENGYEAYVVGGCVRDSILGRAPDDWDITTSASPEQVKELFH----RTVD 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++ K+ +++TT R D DGR+ K +FT + D RRDFTINA+
Sbjct: 63 TGLQHGTVTVLMDKEGYEVTTYRVDGDYEDGRHPKQVMFTSSLEEDLKRRDFTINAMAYH 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++D G+ D++ + I+ +GD R ED LRILR RF A G
Sbjct: 123 PVRGLVDLFHGMEDMQAKIIRCVGDPMERFHEDALRILRAVRFSAQLGFTIEKETKNGIR 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
A + + + L + + Y GI KE + + +
Sbjct: 183 ALAPNLKCVSAERIQTELVKLLASPHP--DYLRVAYETGITKEFLPEFDRCMETEQNTPH 240
Query: 251 EAEQVFEW--------KIDSLLRFIVLISW----------------------QDKKSILS 280
V E + D +LR +L+ + +K +
Sbjct: 241 HCYTVGEHILHSMMLIRPDKVLRLTMLLHDIAKPVMRKTDESGRDHFKMHATEGEKMAKT 300
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ ++ + + + ++ + ++ G+++ L++ A
Sbjct: 301 ILRRLKFDNDTISKVTRLIRYHDDRPMPEMRSVRHAVNRIGEELFPLYLEVQKADMLAQS 360
Query: 341 THQDTCF----------ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390
++ +VL +TG D++ G PG ++G IL
Sbjct: 361 EYRREEKAARLQGVTECYHRVLEQKQCVSLKTLAVTGRDLISAGYKPGPELGEILKEMLD 420
Query: 391 EWINSSFQLSQEDLHHLLRK 410
+ +E L LL++
Sbjct: 421 HVLEYPQDNDREKLLALLKE 440
>gi|50344974|ref|NP_001002159.1| tRNA-nucleotidyltransferase 1, mitochondrial [Danio rerio]
gi|47939337|gb|AAH71337.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Danio rerio]
Length = 405
Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats.
Identities = 110/399 (27%), Positives = 195/399 (48%), Gaps = 13/399 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L+ + + K + + I GGAVRD L +D+D ATT P+ + +F +
Sbjct: 11 LFTDGLVGLAEIFQKNQFELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKTMFQTAGVR 70
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 71 MINNKGEKHGTITARLHEENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMF 130
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDG 186
G + DY G DL+NR ++F+G A RI EDYLRILR+FRF+ + +
Sbjct: 131 LGLDGTLYDYFQGYEDLKNRKVRFVGSASLRIQEDYLRILRYFRFYGRVAAEPGQHEPET 190
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + +GL +S ERIW E+ K+L + + + + + + ++++
Sbjct: 191 LEAIRENARGLAGISGERIWVELKKMLVGNHAGHLLE-LVYELGLAQYTGLPADGDVEEM 249
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
QV + V K ++L + + + + + ++ + RE + + +
Sbjct: 250 KQVWQRAHVSSPKPMTVLAALF----RKQADVEKLDQRLKVSREEKNLGLFLVKY--RRD 303
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + Y D + ++ + L +Q ++L ++ W P FP++
Sbjct: 304 LIKGHDEHDTMKPYTDFITDSREPDTQSKVLELLKYQGEN---KLLDELRRWSIPRFPVS 360
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
G D+ K G GK++G IL + W S +Q+S+++L
Sbjct: 361 GHDLRKLGYTSGKEIGTILQELRDMWKKSRYQMSKDELL 399
>gi|58617624|ref|YP_196823.1| Poly(A) polymerase [Ehrlichia ruminantium str. Gardel]
gi|58417236|emb|CAI28349.1| Poly(A) polymerase [Ehrlichia ruminantium str. Gardel]
Length = 397
Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats.
Identities = 129/405 (31%), Positives = 209/405 (51%), Gaps = 14/405 (3%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ +++D++ I + + K + +VGG VRD+++ DID ATT+LP +++ +
Sbjct: 5 FANNNDILLITNAIKKHQGDIRLVGGCVRDNILKRQTVDIDFATTLLPYQIIEALNIAHI 64
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
K IPT I +GTI I ++ITTLRSD+ DGR+A+V FT +W+ D+ RRDFT NALY
Sbjct: 65 KSIPTGIKHGTITAIVNNTAYEITTLRSDIYCDGRHAEVKFTNNWQQDASRRDFTFNALY 124
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGL 187
D++G V DY G+ DL+N+ + FIGD RI EDYLRILR FRF A + + +
Sbjct: 125 CDEKGIVYDYFSGIQDLKNKQLNFIGDPETRIQEDYLRILRAFRFHAAICSQNKLSDIII 184
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ K + LS ERI E KLL N +N + M + ++I + L
Sbjct: 185 QSCTKYASCISKLSRERIRDEFFKLLSCINLVNTLKIMQKCNVLQKIIP------FEVLP 238
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
VI + + + L ++ +++ SI + L + L+S N +
Sbjct: 239 NVISSSVISHTEPIVKLAALLRT-NKNEFSIDKIRDSLYLSNSDKKLLLSL-VNNNLELP 296
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
LSI + +K +G K+ +KI A + ++Q + + P FPL+G
Sbjct: 297 LSIMDQQKYINKFGKKIYCYLIKIRHA-----ELTLNNHDLVQYIEYADKFVIPEFPLSG 351
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
D + G G+ +G++L + W +S++QL++ L +KL+
Sbjct: 352 KDFLAIGYQEGRHLGDVLKKLRNLWEDSAYQLTRHQLLEHGKKLL 396
>gi|147900819|ref|NP_001089848.1| tRNA nucleotidyl transferase, CCA-adding, 1 [Xenopus laevis]
gi|80477591|gb|AAI08538.1| MGC130991 protein [Xenopus laevis]
Length = 419
Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats.
Identities = 119/408 (29%), Positives = 196/408 (48%), Gaps = 25/408 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L + ++ K + I GGAVRD L D+D ATT PD++ +F K +
Sbjct: 25 LFTDGLKKLTNIFAKDRYELRIAGGAVRDLLSGKQPHDVDFATTATPDQMKDMFIKEGVR 84
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GT+ ++ F+ITTLR DL TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 85 MINNKGEKHGTVTARINEQNFEITTLRVDLHTDGRHAEVEFTTDWETDAERRDLTINSMF 144
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDG 186
G + DY G DL+ R ++F+GD RI EDYLRILR+ RF+ E+ S
Sbjct: 145 LGFDGTLYDYFNGYEDLKKRCVRFVGDPSQRIQEDYLRILRYLRFYGRISERTSAHTSGT 204
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + GL+ +S ERIW E+ K+LE + + I +Y G+ + L ++ +L++
Sbjct: 205 LDAIRENASGLRGISGERIWVELKKILEGNHVNHLIQIIYELGVAPHVGLP-EDGNLEEF 263
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++V E K +LL + + + + + +E + +
Sbjct: 264 ARVCEHSHRMSPKPMTLL----TALLSNMDHVQKLDLRLKISKEEKNLALFLLQQRKELT 319
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV------LSDIIHWKK 360
D+ + K ++ H+ C +L+ ++ W
Sbjct: 320 AERT-----------DEAPLKPFKDYVVDSREPDAHRKICELLKYQGEEQFFREMEAWTL 368
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
P FP++G D+ + GI GK +G IL ++ W S +Q S+E+L + +
Sbjct: 369 PRFPVSGHDLRRMGISSGKDIGRILQELREHWKESGYQASKEELLNRV 416
>gi|304385035|ref|ZP_07367381.1| poly A polymerase [Pediococcus acidilactici DSM 20284]
gi|304329229|gb|EFL96449.1| poly A polymerase [Pediococcus acidilactici DSM 20284]
Length = 402
Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats.
Identities = 99/403 (24%), Positives = 172/403 (42%), Gaps = 20/403 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ N+L + + ++ VGG+VRD+L+ + D+DIAT+ P + +IF + +
Sbjct: 12 EEARNVLQQIEEAGYEAYFVGGSVRDTLLGKPIHDVDIATSAYPAEIKQIFK----RTVD 67
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + ++ITT R++ R +V F R K D +RRDFTINA
Sbjct: 68 TGIEHGTVMVLTGEHSYEITTFRTESGYQDFRRPDQVTFVRSLKEDLMRRDFTINAFALR 127
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ VID GL DL+ + I+ +GD R ED LR++R RF + I+ L A
Sbjct: 128 EDRTVIDVFDGLTDLKQQKIRAVGDPKARFHEDALRMMRGVRFASQLDFV-IEPQTLAAI 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-LDQLSQV 249
L +S ER E K++ NP + M + + + + L +L
Sbjct: 187 KMNSSLLAKISVERTLVEFQKMMLGTNPNRGLADMVATRLHEYCPGLAGKGAVLQELLAY 246
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
++ E ++ +LL +++ + I K++ E+ + + S
Sbjct: 247 PLSQLENETQVWALLAWMLQLRG---AQINRFLKQWKTSNELIRHVTATVRVLSMLD--S 301
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + + G + +++ L + D L + +TG D
Sbjct: 302 TGVDRIILFEAGANNVANAVRVAKILGH------DAQGWLDTYQTLQIKSPKELAVTGKD 355
Query: 370 VVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
++ I PG ++G IL K IN E L RKL
Sbjct: 356 LIANQIITPGPQMGRILNSLKAMVINDQLPNQPEALFTAARKL 398
>gi|4929563|gb|AAD34042.1|AF151805_1 CGI-47 protein [Homo sapiens]
gi|15214805|gb|AAH12537.1| TRNT1 protein [Homo sapiens]
Length = 405
Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats.
Identities = 118/404 (29%), Positives = 199/404 (49%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QDID ATT P ++ +F +
Sbjct: 11 LFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIR 70
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 71 MINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 130
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 131 LGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPET 190
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + +N ++H+ SL++
Sbjct: 191 LEAIAENAKGLAGISGERIWVELKKILVGNH-VNHLIHLIYDLDVAPYIGLPANASLEEF 249
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+V + F K +LL + + + + + + +E + + +
Sbjct: 250 DKVSKNVDGFSPKPVTLLASLFKVQDD----VTKLDLRLKIAKEEKNLGLFIVKN--RKD 303
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + Y D ++ ++ L +Q + L ++ W P FP++
Sbjct: 304 LIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCL---LKEMQQWSIPPFPVS 360
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 361 GHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 404
>gi|71082812|ref|YP_265531.1| Poly(A) polymerase (PAP) [Candidatus Pelagibacter ubique HTCC1062]
gi|71061925|gb|AAZ20928.1| Poly(A) Polymerase (PAP) [Candidatus Pelagibacter ubique HTCC1062]
Length = 424
Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats.
Identities = 113/401 (28%), Positives = 189/401 (47%), Gaps = 8/401 (1%)
Query: 11 HDSDLINILSLLNKG--EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
++++ I ++ + VGG VR + + DID+A + P V +K
Sbjct: 27 KETEVSKIFEAIHSYSSNSEIRYVGGCVRKIINKEAYDDIDLAVNLNPKEVCEALTKKDI 86
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
K + I +GTI + F+IT+LR D+ TDGR+AKV F+ WK D+ RRDFTIN++Y
Sbjct: 87 KYYESGIEHGTITALINDIKFEITSLRKDIDTDGRHAKVEFSDSWKEDASRRDFTINSIY 146
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
AD +G + D G DL I FIG+ RI EDYLR+LR+ RFF Y + + D +
Sbjct: 147 ADIEGSLFDPFDGKKDLERGKINFIGNVETRIKEDYLRVLRYVRFFLSYSKHSHDPQVIK 206
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K G+ +SSER+ E KLL++ L I IF ++ ISL
Sbjct: 207 AIKKNLSGVSSISSERLIDEFQKLLKSNGFLKLTKDKDCLEIINLIFPQIKNISLFNKMN 266
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ E LL +++ + + ++ FL F +T
Sbjct: 267 SFAKKNFLEMDFIFLLSLMIIDGTDNVDYFIYKFNLSKKDQKRLIFLNKFNLEKNTNQTF 326
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
S + K+FY G + ++ L + + + +++++ + P+ P
Sbjct: 327 SEKNLNKIFYFNGREALLDVLYFKIF-----KSKKVDNKLIKMIEIFKKKEMPVMPFKAS 381
Query: 369 DVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ KY IP GK++G L ++ W ++ F++S ++L ++
Sbjct: 382 TLMEKYKIPEGKELGQKLKAIEEVWTSNDFKISDKELQKIV 422
>gi|307704397|ref|ZP_07641310.1| RNA nucleotidyltransferase [Streptococcus mitis SK597]
gi|307622041|gb|EFO01065.1| RNA nucleotidyltransferase [Streptococcus mitis SK597]
Length = 394
Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats.
Identities = 95/399 (23%), Positives = 176/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLQRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIIDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ELEPETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLAAMIESQA--YDYLPDMAASQDKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ K + R+ + ++ +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQPFLKAWKTSRQFAKQVQDLLTILTLREKGELSN 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L L + I + + K + G ++K
Sbjct: 300 RDCYRFD------LDLLLQAENLRQAQGKPVNPQAITETYQSLTIHDKKEIQINGGILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++ +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEYAIVDGELENDRQAIHAYLRE 392
>gi|170760612|ref|YP_001787688.1| polyA polymerase family protein [Clostridium botulinum A3 str. Loch
Maree]
gi|169407601|gb|ACA56012.1| polyA polymerase family protein [Clostridium botulinum A3 str. Loch
Maree]
Length = 450
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 104/440 (23%), Positives = 184/440 (41%), Gaps = 42/440 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I++ L + ++ IVGGAVRDSL+ V D DI T+ P VM IF YK+IP
Sbjct: 12 KGVEYIINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVMNIFENLGYKIIP 71
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T + +GT+ I+ +++TT R + + R +V FT + K D RRD TINA+ +
Sbjct: 72 TGLKHGTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLKEDLKRRDLTINAMAYN 131
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +++DY GL DL N+ I+ +GD+ R ED LR+LR RF + ++ +
Sbjct: 132 DKTRLVDYFHGLEDLNNKIIRCVGDSKDRFNEDSLRMLRCIRFASQLNFH-MEESTKLNI 190
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ + + +S ERI E+ K+L + P+ I ++ + I +++ + +
Sbjct: 191 RELSRNIANVSMERIRDELCKILVSSQPVYGIRNIVELNLVDYIIPELKACVGFEQHNIH 250
Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDKKSIL----------------------S 280
+ V+ LR L+ K
Sbjct: 251 HDKDVYGHILSVVENVPNKLELRLSALLHDIGKPKCFSIGDNGQGHFYGHQKISADMTKD 310
Query: 281 MAKKFSLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ K+ +I Y + + L P IKK G + ++ +A +
Sbjct: 311 ILKRLKFDNKIIYKVDKLVYNHMTRYNKLRTPSIKKFINKVGIDNLDDLFELQIADIKGS 370
Query: 340 LTHQD--------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
++LS+ + G D++K GI GK++G +L
Sbjct: 371 AKEYHSFNNVLNLKIKCEKILSEKQPLTIKDLDINGYDLMKLGINQGKEIGIMLNKLLDI 430
Query: 392 WINSSFQLSQEDLHHLLRKL 411
+ + ++EDL ++ +
Sbjct: 431 ILENPNLNNKEDLIKIVESI 450
>gi|254556742|ref|YP_003063159.1| tRNA CCA-pyrophosphorylase [Lactobacillus plantarum JDM1]
gi|254045669|gb|ACT62462.1| tRNA CCA-pyrophosphorylase [Lactobacillus plantarum JDM1]
Length = 407
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 101/407 (24%), Positives = 173/407 (42%), Gaps = 17/407 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
I+ + ++ VGG VRD+++ + D+DIAT+ P V ++F + + T
Sbjct: 12 AAKPIIETIEAAGYEAYFVGGCVRDTILGKPLHDVDIATSAFPAEVKQLFK----RTVDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ I+ ++ TT R++ R +V F R K D RRDFTINAL
Sbjct: 68 GIEHGTVMILDHGNGYETTTFRTESGYQDFRRPDQVTFVRSLKEDLKRRDFTINALAMTA 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL D+ ++ +G A R ED LR++R RF + G I+S A
Sbjct: 128 NGEVIDLFDGLADMEQGILRAVGVAEERFHEDALRMMRAVRFASQLGF-TIESQTEQAIA 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIV-HMYNGGIFKEIFLDVQEISLDQLSQVI 250
L ++ ER E KLL ++P+ + + + QE L QL +
Sbjct: 187 DNAALLAKIAVERTRVEWEKLLMGQHPVAGLTGLLTTDLYRYMPAMADQEAMLRQLMALP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+LL + + D+ ++ + K + E+ + + K
Sbjct: 247 AWHLPSIESTWTLLSWTMQ--RTDEAAVRQLLKTWKTSNELINHVTAAIKALMALKHNGQ 304
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
++ FY G + + ++ L + QD ++Q + + K + G D+
Sbjct: 305 LTAQENFY-TGLEALKTANQVATILGFG----QDQAQLVQAYASLPIHDKHELAINGGDL 359
Query: 371 VKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+K + PG +G IL C Q + Q+ L R ++A S+
Sbjct: 360 LKAKLVTPGPMMGQILAACLQAVVMKQVPNQQDALLDFAR-MVADSK 405
>gi|260431989|ref|ZP_05785960.1| poly A polymerase family protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415817|gb|EEX09076.1| poly A polymerase family protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 383
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 118/405 (29%), Positives = 182/405 (44%), Gaps = 26/405 (6%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ W + N+ + L +G ++ VGG VR++L+ V D+DIAT P +VM +
Sbjct: 3 ITEDWITNPATQNVCAALTEGGAQALFVGGCVRNALLGAPVSDLDIATDARPQQVMDLVE 62
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
K K +PT I +GT+ ++ +ITT R D+ TDGR A V F+ + D+ RRDFT+
Sbjct: 63 KAGLKAVPTGIDHGTVTVVSDGIPHEITTFRRDVETDGRRAVVAFSDQVEEDAARRDFTM 122
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182
NALYA G ++D +GGL DLR R ++FIG A RI EDYLR LR+FRF A YG + +
Sbjct: 123 NALYARPDGTILDPLGGLPDLRARRVRFIGTARDRIREDYLRSLRYFRFHAWYGDAQAGM 182
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D D L A GL LS ER+ +E+ KLL A +P ++ M + G+ + +
Sbjct: 183 DPDALAAIAADLDGLDRLSRERVGAEMLKLLAAPDPAPSVAAMRSIGVLAHLLPGADD-- 240
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
L +I E D+L R + + ++ + +
Sbjct: 241 -RALPILIHLESHAGLAPDALRRLAAIAGPEVAGTLRLSKAQLT------------RLTR 287
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+L Y G + + + A T + +
Sbjct: 288 IRDGAQGGAGAAELGYRLGQRDGLDAALLRCAFLEQPWTSETGAAV-------ETGAAAT 340
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
FP+ D++ G +G L + WI S F L ++ L +
Sbjct: 341 FPVKAADLLDRF--SGPALGAKLAEMESRWIASDFTLDRDALLQV 383
>gi|126730078|ref|ZP_01745890.1| polyA polymerase family protein [Sagittula stellata E-37]
gi|126709458|gb|EBA08512.1| polyA polymerase family protein [Sagittula stellata E-37]
Length = 387
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 124/409 (30%), Positives = 189/409 (46%), Gaps = 27/409 (6%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
++ V W +L++L G ++ VGG VR++L+ V D+D++T P+RV+
Sbjct: 1 MTRVTGDWLTAPGAQAVLTMLEAGGHRAYAVGGCVRNALLGEPVADVDVSTDARPERVIE 60
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ + +PT I +GT+ I+ +++TT R+D+ TDGR A V F D D++RRD
Sbjct: 61 LARAAGLRAVPTGIDHGTVTIVANGTGYEVTTFRADIETDGRRAVVRFADDVAEDAVRRD 120
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK- 180
FT+NALY D+ G++ D +GGL DL R ++FI DA RI EDYLRILRFFRF+A YG+
Sbjct: 121 FTMNALYVDRHGEITDPLGGLPDLMARRLRFIEDADRRIREDYLRILRFFRFYAWYGDPQ 180
Query: 181 -NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+D+D L A GL+ LS ER+ E+ KL A +PL A M G+ + +
Sbjct: 181 AGVDADALAAIAANLDGLETLSRERVGQELLKLFAAPDPLAATAVMARAGVLQAVLPGAS 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
E L L +E E + D L R + ++ + + + L +
Sbjct: 241 ETPLGPL---LEHETTLDLPPDPLRRLAAIGAFDG--------EALRFSKVQKKRLEQYQ 289
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ L Y + + L + A L I +
Sbjct: 290 GLISDPIPLPEVA-----YRFTADMARDVLVLRAATFGAPLDTSALPRIKRA-------A 337
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K FP+ D+ G +G L + EWI S F L + L
Sbjct: 338 KARFPVAASDLKDRF--QGPALGEALRRLEAEWIASDFALDKATLLSRA 384
>gi|198453059|ref|XP_001359047.2| GA15240 [Drosophila pseudoobscura pseudoobscura]
gi|198132197|gb|EAL28190.2| GA15240 [Drosophila pseudoobscura pseudoobscura]
Length = 450
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 122/412 (29%), Positives = 205/412 (49%), Gaps = 20/412 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
++ +++SL K + + I GGAVRD +M + +DID ATT PD++ +F+K +
Sbjct: 41 IFTPEVDSLVSLFKKYDYEIRIAGGAVRDIIMGIKPKDIDFATTATPDQMKDMFTKENVR 100
Query: 70 VIP-TSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI + F++TTLR D+ T+GR+A VVFT DW+ D+ RRD TIN++
Sbjct: 101 MINSKGEKHGTITPRINGKENFEVTTLRIDVRTNGRHADVVFTTDWQLDANRRDLTINSM 160
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSD 185
+ G V DY G +DL+ R + F+GDA RI EDYLRILR+FRF+ ++ D
Sbjct: 161 FLGFDGTVYDYFYGYDDLQQRRVVFVGDADIRINEDYLRILRYFRFYGRIAKDAESHDPS 220
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L A K +GL +S ERIWSE+ K++ ++ M+ +F+ L V+ +L++
Sbjct: 221 TLAAIKKNAEGLARISGERIWSELQKIIVGNYGNELVLEMHRCNLFQHCGLPVKP-NLNE 279
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ E +FE +L L+ ++ +L K S I+ +
Sbjct: 280 FQILCETLDIFEKPHYPILYMTGLLHSVEEAMMLHERLKLSAFERDLALFITQQRTRVDS 339
Query: 306 KTLSIPEIKK-LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
+ ++ + +K Y + + +L + + + + W P FP
Sbjct: 340 EYTTLRDYQKLCLQPYAKRDYVEQLL-------------KYTRKVDLYNQLKAWSNPSFP 386
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
L G+ + +G+ GK +G L + W +S FQL+ L + +++ Q
Sbjct: 387 LNGNILKDHGL-SGKNIGTGLSLLRLMWADSDFQLTSGQLLEKIPQILEKLQ 437
>gi|158321388|ref|YP_001513895.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Alkaliphilus oremlandii OhILAs]
gi|158141587|gb|ABW19899.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Alkaliphilus oremlandii OhILAs]
Length = 450
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 108/438 (24%), Positives = 185/438 (42%), Gaps = 43/438 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL + + + IVGG VRDS++N S QD DI T P+++M + S +KVIP
Sbjct: 13 KAVEQILDIFSINGYEGYIVGGCVRDSILNKSPQDWDICTNCTPEKMMELLS--GFKVIP 70
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++ +++TT R D DGR+ + FT + D RRDFTINA+
Sbjct: 71 TGLKHGTVTVVIDHVGYEVTTYRVDGDYRDGRHPEKVQFTASLREDLKRRDFTINAMAYH 130
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +IDY GG+ DL NR IK +G+ R EDYLR+LR RF A ++
Sbjct: 131 HKDGLIDYHGGMEDLWNRKIKTVGNPLERFSEDYLRMLRAVRFSAQLDY-TLEERTFQGI 189
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ +S+ERI E+NK+L + P +V +++ + K I +++
Sbjct: 190 RALSHNIGKISTERIREELNKILMTEVPSRGLVLLHDTDLLKYILPELEVCVGFNQHSPH 249
Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQD----------------------KKSILS 280
+ VF + D +LR L+ K+
Sbjct: 250 HDKDVFNHILSVVDQTEKDLILRLAALLHDIGKPETFSLDESGIGHFYRHHVASWKTAQK 309
Query: 281 MAKKFSLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ ++ +++ + + LS IK+L M K+ +A +
Sbjct: 310 IMRRLKYDNRTIDQVLALVKEHMTRYEKLSDKAIKRLISRVNPSNMHRLFKLQIADIGGS 369
Query: 340 LTHQDTCFILQVLSDIIH-------WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
D +L + ++G +++ G+P GKK+G IL +
Sbjct: 370 SKRNDISDVLDLKRRAERILHEKQPLSIKDLEISGHHLMELGVPEGKKIGRILNELMEIV 429
Query: 393 INSSFQLSQEDLHHLLRK 410
+ + + L + R+
Sbjct: 430 LENPELNTTNTLLQIARE 447
>gi|114326216|ref|NP_001039341.1| tRNA-nucleotidyltransferase 1, mitochondrial [Bos taurus]
gi|92096972|gb|AAI14832.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Bos taurus]
gi|296474963|gb|DAA17078.1| tRNA nucleotidyl transferase, CCA-adding, 1 [Bos taurus]
Length = 434
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 120/404 (29%), Positives = 204/404 (50%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L + + I GGAVRD L + QD+D ATT P ++ +F +
Sbjct: 40 LFTEGLKSLTELFVRENHELRIAGGAVRDLLSGVKPQDVDFATTATPAQMKELFQSVGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNKGEKHGTITARLHEENFEITTLRIDVATDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 160 LGFDGTLFDYFNGYEDLKNKKVRFVGQAKQRIQEDYLRILRYFRFYGKIVDTPGDHDPET 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + + I +Y + I L SL++
Sbjct: 220 LEAIAENAKGLAGVSGERIWVELKKILTGDHVNHLIHLIYELDVAPYIGLPANA-SLEEF 278
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++V + + F K +LL + + + + + + +E + + +
Sbjct: 279 NKVSKNVEGFSPKPMTLLTSLFKVQDD----VTKLDLRLKISKEEKNLGLFIVKN--RKD 332
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + + Y D ++ ++ A L +Q +L+ + W P FP++
Sbjct: 333 LIKAVDSSEPLKPYQDFIIDSREADATARVCELLKYQGEHGLLKQMQQ---WSIPPFPVS 389
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +QL +++L ++K
Sbjct: 390 GHDIRKVGISSGKEIGVLLQQLREQWKKSGYQLEKDELLSYIKK 433
>gi|86136787|ref|ZP_01055365.1| polyA polymerase family protein [Roseobacter sp. MED193]
gi|85826111|gb|EAQ46308.1| polyA polymerase family protein [Roseobacter sp. MED193]
Length = 389
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 125/411 (30%), Positives = 195/411 (47%), Gaps = 25/411 (6%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
+++ W D+ N+ S L ++ VGG VR++LM + V DIDIAT P V+
Sbjct: 1 MALAGETWIRDAATQNVCSALTAQGAEALFVGGCVRNALMGVPVSDIDIATDASPQEVLA 60
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ K IPT I +GT+ ++ + ++TT R D+ TDGR A V F++D D+ RRD
Sbjct: 61 LAKSAGIKAIPTGIEHGTVTLVKDQIPHEVTTFRKDVATDGRRAVVAFSKDIAEDAARRD 120
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FT+NA+YA G ++D +GG+ DL R ++FIG A +RI EDYLR LR+FRF A YG+K+
Sbjct: 121 FTMNAIYARPDGSIVDPLGGMADLAARRVRFIGTAENRIREDYLRTLRYFRFHAWYGDKD 180
Query: 182 --IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
D + L A +GL LS ER+ SE+ KLL A +P AI M G+ +I
Sbjct: 181 AGFDPEALAAIAANLEGLSQLSLERVTSEVLKLLAAPDPAPAIAAMRQIGVLNQILPGAD 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ SL L + + +D + R L + +
Sbjct: 241 DRSLAPLIHLQAHHPDRDISLDPVCRLAALGGSE------------LQENLRLSKAEARL 288
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ + + +L Y G + + + AL ++ + SD+
Sbjct: 289 LVHLREAATGVILPAELSYRLGRDIALQASVLRSALLEEPVSP-------NLGSDLARGS 341
Query: 360 KPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ +FPL D++ G +G L + WI S F L++ +L L+
Sbjct: 342 EAVFPLKAADLMPDL---SGSALGAALKKLESAWIQSGFTLNRNELLQKLK 389
>gi|228477863|ref|ZP_04062477.1| cca-adding enzyme [Streptococcus salivarius SK126]
gi|228250353|gb|EEK09593.1| cca-adding enzyme [Streptococcus salivarius SK126]
Length = 395
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 94/401 (23%), Positives = 176/401 (43%), Gaps = 16/401 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + ++ VGG+VRD+L+N + D+DIA++ P+ +IF + +
Sbjct: 8 ALPILEKIKAAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFE----RTVDIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ +++TT R++ + R + V F R + D RRDFT+NA ++
Sbjct: 64 IEHGTVLVLENGGEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNEN 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+VID GL DL NR ++ +G A R ED LRI+R RF A +I+ A
Sbjct: 124 AEVIDKFNGLADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASLDF-DIEEKTFQAMTS 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + I + ++ + D QE + + + V +
Sbjct: 183 HAPLLEKISIERSFIEFDKLLLAPHWKKGIKALLATKAYQYL-PDFQETAEEWQAFVADY 241
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ F + S + + + S KK+ + + S + ++ +
Sbjct: 242 VEDFRFT-SSEQAWAATLLALKHDNPRSFLKKWKTSVNFQKTVQSLIEIFNFRLERAVTK 300
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ Y YG + L+ L D I+ + ++ K + G ++K
Sbjct: 301 --QDVYQYGKE----LLEAAETLRQAQGLDVDYERIVALDGQLLIHDKHEIVVNGGTLMK 354
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
G PG +G +L + ++ +E + ++ +
Sbjct: 355 ELGFKPGPDLGRVLKAIENAIVDGKLANDKEAIMAFVQAMK 395
>gi|170755697|ref|YP_001781925.1| polyA polymerase family protein [Clostridium botulinum B1 str.
Okra]
gi|169120909|gb|ACA44745.1| polyA polymerase family protein [Clostridium botulinum B1 str.
Okra]
Length = 450
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 100/441 (22%), Positives = 181/441 (41%), Gaps = 42/441 (9%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK+I
Sbjct: 11 SKGVEYIINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKII 70
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYA 129
PT + +GT+ I+ +++TT R D + R+ K FT + + D RRD TINA+
Sbjct: 71 PTGLKHGTVTILISSIGYEVTTFRVDGEYEDNRHPKEVKFTSNLREDLKRRDLTINAMAY 130
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + ++DY GL DL N+ I+ +G++ R ED LR+LR RF + ++ +
Sbjct: 131 NDKIGLVDYFHGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNFH-MEESIKLN 189
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ + + +S ERI E+ K+L + P+ I ++ + I +++ + +
Sbjct: 190 IRELSRNIANVSMERIRDELCKILVSSQPVYGIKNIVELNLMDYIIPELKACVGFEQHNI 249
Query: 250 IEAEQVFEW--------KIDSLLRFIVLISWQDKKSIL---------------------- 279
+ V+ LR L+ K
Sbjct: 250 HHDKDVYGHILSVVENVPNKLELRLAALLHDIGKPKCFSIGDNGQGHFYGHQKISADMTK 309
Query: 280 SMAKKFSLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
+ K+ + + + L P IKK G + ++ +A
Sbjct: 310 DILKRLKFDNKTIDKVDKLVYNHMARYNKLKTPNIKKFINKVGIDNLDDLFELQIADIKG 369
Query: 339 NLTHQD--------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390
+ ++LS+ + G D++K GI GK++G +L
Sbjct: 370 SAKEYHSFDSVLNLKIKCEKILSEKQPLTIKDLDINGHDLMKLGINQGKEIGIMLNKLLD 429
Query: 391 EWINSSFQLSQEDLHHLLRKL 411
+ + ++EDL ++ +
Sbjct: 430 IILENPNLNNKEDLIKIVESI 450
>gi|57239582|ref|YP_180718.1| Poly(A) polymerase [Ehrlichia ruminantium str. Welgevonden]
gi|58579571|ref|YP_197783.1| Poly(A) polymerase [Ehrlichia ruminantium str. Welgevonden]
gi|57161661|emb|CAH58591.1| putative nucleic acid independent RNA polymerase [Ehrlichia
ruminantium str. Welgevonden]
gi|58418197|emb|CAI27401.1| Poly(A) polymerase [Ehrlichia ruminantium str. Welgevonden]
Length = 397
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 129/405 (31%), Positives = 209/405 (51%), Gaps = 14/405 (3%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ +++D++ I + + K + +VGG VRD+++ DID ATT+LP +++ +
Sbjct: 5 FANNNDILLITNAIKKYQGDIRLVGGCVRDNILKRQTVDIDFATTLLPYQIIEALNIAHI 64
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
K IPT I +GTI I ++ITTLRSD+ DGR+A+V FT +W+ D+ RRDFT NALY
Sbjct: 65 KSIPTGIKHGTITAIVNNTAYEITTLRSDIYCDGRHAEVKFTNNWQQDASRRDFTFNALY 124
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGL 187
D++G V DY G+ DL+N+ + FIGD RI EDYLRILR FRF A ++ + +
Sbjct: 125 CDEKGIVYDYFSGIQDLKNKQLNFIGDPETRIQEDYLRILRAFRFHAAICSQDKLSDIII 184
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ K + LS ERI E KLL N +N + M + ++I + L
Sbjct: 185 QSCTKYASCISKLSRERIRDEFFKLLSCINLVNTLKIMQKCNVLQKIIP------FEVLP 238
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
VI + + + L ++ +++ SI + L + L+S N +
Sbjct: 239 NVISSTVISHTEPIVKLAALLRT-NKNEFSIDKIRDSLYLSNSDKKLLLSL-VNNNLELP 296
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
LSI + +K G K+ +KI A + ++Q + + P FPL+G
Sbjct: 297 LSIMDQQKYINKLGKKIYCYLIKIRHA-----ELTLNNHDLVQYIEYADKFVIPEFPLSG 351
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
D + G G+ +G++L + W +S++QL++ L +KL+
Sbjct: 352 KDFLAIGYQEGRHLGDVLKKLRNLWEDSAYQLTRHQLLEHGKKLL 396
>gi|195107325|ref|XP_001998264.1| GI23728 [Drosophila mojavensis]
gi|193914858|gb|EDW13725.1| GI23728 [Drosophila mojavensis]
Length = 450
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 127/415 (30%), Positives = 204/415 (49%), Gaps = 22/415 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L ++++ K + + I GGAVRD LMN+ +DID ATT P+++ +F K +
Sbjct: 45 IFTPELEALVAMFKKYDYELRIAGGAVRDILMNIKPKDIDFATTATPEQMKEMFGKEEVR 104
Query: 70 VIP-TSISYGTIKII-CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI K+ F++TTLR D+ TDGR+A VVFT DW+ D+ RRD TIN++
Sbjct: 105 LINAKGEKHGTITPRIHNKENFEVTTLRIDVRTDGRHADVVFTTDWQLDANRRDLTINSM 164
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSD 185
+ G V DY G DL+ R + F+GDA RI EDYLRILR+FRF+ D
Sbjct: 165 FLGFDGTVYDYFYGYEDLQQRRVVFVGDADVRIKEDYLRILRYFRFYGRIAERPDCHDKA 224
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L A GL +S ERIW+E+ K++ I+ M N G+ ++ L + +L++
Sbjct: 225 TLAAIKANAVGLARISGERIWAELQKIVVGNFNRELILEMNNCGLLQQCGLPIHP-NLEE 283
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+V + F +L I L+ ++ L K S ++ F +
Sbjct: 284 FERVCVDLKRFHEPHYPILYLIGLLHSSEQAMKLHERLKLSAYERD----LALFITQQRE 339
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ S + + + + + L Y N L++ + + W+ P P+
Sbjct: 340 RVNSEYVCLRDYQKLCLQPYAKRDYVEQLLKYANK--------LELYAQLKEWQMPSLPI 391
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH----LLRKLIASSQ 416
G+ + YG+ GK+VG +L + W +S F LS E L +L +L + ++
Sbjct: 392 NGNTLKPYGL-AGKQVGVVLNELRLLWADSDFTLSAEQLLEKMPAILEQLPSPNK 445
>gi|184155361|ref|YP_001843701.1| tRNA CCA-pyrophosphorylase [Lactobacillus fermentum IFO 3956]
gi|226702069|sp|B2GC39|CCA_LACF3 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|183226705|dbj|BAG27221.1| putative poly(A) polymerase [Lactobacillus fermentum IFO 3956]
Length = 400
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 101/404 (25%), Positives = 167/404 (41%), Gaps = 16/404 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
ILS + + ++ VGG VRD+++NL + DIDIAT+ P + +IFS + +
Sbjct: 11 EPARPILSRIEEAGFEAYFVGGCVRDTILNLPIHDIDIATSAYPAEIKQIFS----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ I+ ++ TT R++ R V F R K D RRDFTINAL
Sbjct: 67 TGIEHGTVMILDHGTGYETTTFRTESGYQDFRRPDSVTFVRSLKEDLQRRDFTINALALK 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G V+D GL DL+ IK +GD R ED LR++R RF A G + I+ L
Sbjct: 127 EDGTVVDLFDGLGDLKRHLIKAVGDPAERFHEDALRMMRAARFAAKLGFQ-IEPGTLAGM 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L+ ++ ERI E KLL K N + M + + ++E L +
Sbjct: 186 SQNAALLEKIAVERIQVEFEKLLLGKAVQNGLAAMLDTKL-YLHCPGLKE-GGQGLQYLA 243
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + + + DK + K + L + + +K +
Sbjct: 244 QQPLTLNNATQAWGALAICL-GLDKNQLRPFLKGWKLSNGLITAVSRAVP--LVEKLTTK 300
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
Y G + + + I +L D + + + L G D+
Sbjct: 301 TAGASDLYQAGQQAVADAVVIANSLGGQ----VDPQAVQAAYQALPIKESGELALNGGDL 356
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+K G+ PG +G L ++ + + L +L+ +
Sbjct: 357 IKAGVKPGPAMGKALTTLTKQVVEGQLANDYQTLLKAAGELLKA 400
>gi|260101624|ref|ZP_05751861.1| poly A polymerase [Lactobacillus helveticus DSM 20075]
gi|260084557|gb|EEW68677.1| poly A polymerase [Lactobacillus helveticus DSM 20075]
Length = 399
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 91/399 (22%), Positives = 174/399 (43%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F+K+ I T
Sbjct: 14 AMPVLQTLEDAGFEAYFVGGSVRDLLLDRHVHDVDITTSAYPEEVKELFAKS----IDTG 69
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D
Sbjct: 70 IRHGTVTVLYGGESYEITTFRTESGYQDYRRPDHVTFVQNLDEDLKRRDFTINALAMDLY 129
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D G+ DL+N I+ +GD R ED LR++R RF + + N++ A
Sbjct: 130 GQIVDLFNGVEDLKNHIIRAVGDPEKRFHEDALRMMRAVRFTSQL-KFNLEEKTEQAIKD 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ LK +S ERI E K+ + A + + +++ +L Q+
Sbjct: 189 NHELLKKISVERIREEFVKMGIGPHSRQAFQIFLDTQLSEDVP---DFAGKKELLQIYPQ 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
Q SL I+++ + I + + + + + +
Sbjct: 246 LQFSPTLETSLWSLIIILLKLPDEDISKFMRDWKNSNAMTEQVERIIKFFDLISDHTPND 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ G++ +I + + L + ++ + K + G ++K
Sbjct: 306 Y--ELFQAGERTIINTIDVAHIL----GQPVASEALVDRYLALPIKKPAELAIDGRFLIK 359
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+G+ PG ++G+ L ++ ++S + S + + L L
Sbjct: 360 HGMRPGAELGHTLNKIRELVVSSRLENSPDAIEKYLEDL 398
>gi|255525052|ref|ZP_05391998.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium carboxidivorans P7]
gi|296187402|ref|ZP_06855797.1| uncharacterized domain HDIG containing protein [Clostridium
carboxidivorans P7]
gi|255511308|gb|EET87602.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium carboxidivorans P7]
gi|296047924|gb|EFG87363.1| uncharacterized domain HDIG containing protein [Clostridium
carboxidivorans P7]
Length = 460
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 105/446 (23%), Positives = 188/446 (42%), Gaps = 41/446 (9%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ HK F D +I+ +L +S +VGG VRDSL+N +D D+ T LP++ + IF
Sbjct: 1 MDDHKIFIPQDTKHIMKILKNKGYESYVVGGCVRDSLINREPKDWDLTTNALPEQTLEIF 60
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRD 121
++VI T I +GT+ I+ +++TT R D R+ FT K D RRD
Sbjct: 61 KTEGFRVIETGIKHGTVTILMNGNPYEVTTYRVDGEYLDNRHPDNVTFTTSLKEDLSRRD 120
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FTIN++ ++ +IDY G++DL+++ I+ +G+A R ED LR+LR RF + K
Sbjct: 121 FTINSMAYNEDKGLIDYFNGISDLKSKIIRCVGNADERFNEDALRMLRAVRFSSELEFKL 180
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
A K ++ +S ERI E K+L + P N ++ + + + I ++
Sbjct: 181 DFEGTFSAIKKNCNLIRNISVERIREEFCKILISHKPSNGVLALKETNLLEYILPEIVPC 240
Query: 242 SLDQLSQVIEAEQVFEWKIDSL--------LRFIVLISWQDKKSILSM------------ 281
+ V + +F + L +R L+ K +M
Sbjct: 241 TGFNQHNVHHDKDIFYHTLSVLDNAPNNINIRLAALLHDIGKPKCFTMDDKNIGHFYGHN 300
Query: 282 ----------AKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLK 330
+ + + + ++ + IKK + + + +
Sbjct: 301 KVSAEIARKILVRLKFDNKTIDTVYLLIYEHMSKFDKIKPYSIKKFMNRVKIENLESLFE 360
Query: 331 IFLALHYN-NLTHQDTCFILQVLSDIIHWKKPLFP-------LTGDDVVKYGIPPGKKVG 382
+ +A ++D IL + K P + G D++ GI GK++G
Sbjct: 361 LQIADIKGLAEEYRDYSKILSLKDKCETIIKEKQPLNMKDLNINGSDLINLGIKQGKQIG 420
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLL 408
IL + ++ ++E L +L+
Sbjct: 421 EILEALLDRVLQNTELNNKEKLLNLV 446
>gi|161507464|ref|YP_001577418.1| tRNA CCA-pyrophosphorylase [Lactobacillus helveticus DPC 4571]
gi|172048281|sp|A8YV39|CCA_LACH4 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|160348453|gb|ABX27127.1| tRNA nucleotidyltransferase [Lactobacillus helveticus DPC 4571]
gi|323466652|gb|ADX70339.1| tRNA nucleotidyltransferase [Lactobacillus helveticus H10]
Length = 399
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 91/399 (22%), Positives = 170/399 (42%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F+K+ I T
Sbjct: 14 AMPVLQTLEDAGFEAYFVGGSVRDLLLDRHVHDVDITTSAYPEEVKELFAKS----IDTG 69
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D
Sbjct: 70 IRHGTVTVLYGGESYEITTFRTESGYQDYRRPDHVTFVQNLDEDLKRRDFTINALAMDLH 129
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D G+ DL+N I+ +GD R ED LR++R RF + + N++ A
Sbjct: 130 GQIVDLFNGVEDLKNHIIRAVGDPEKRFHEDALRMMRAVRFTSQL-KFNLEEKTEQAIKD 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ LK +S ERI E K+ + A + +L Q+
Sbjct: 189 NHELLKKISVERIREEFVKMGIGPHSRQAFQI---FLDTQLSEDVPDFAGKKELLQIYPQ 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
Q SL I+++ + I + + + + + +
Sbjct: 246 LQFSPTLETSLWSLIIILLKLPDEDISKFMRDWKNSNAMTEQVERIIKFFDLISDHTPND 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ G++ +I + + L + ++ + K + G ++K
Sbjct: 306 Y--ELFQAGERTIINTIDVAHIL----GQPVASEALVDRYLALPIKKPAELAIDGRFLIK 359
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+G+ PG ++G+ L ++ ++S + S + + L L
Sbjct: 360 HGMRPGAELGHTLNKIRELVVSSRLENSPDAIEKYLEDL 398
>gi|28378528|ref|NP_785420.1| tRNA CCA-pyrophosphorylase [Lactobacillus plantarum WCFS1]
gi|308180685|ref|YP_003924813.1| tRNA CCA-pyrophosphorylase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|73619787|sp|Q88W02|CCA_LACPL RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|28271364|emb|CAD64269.1| polynucleotide adenylyltransferase [Lactobacillus plantarum WCFS1]
gi|308046176|gb|ADN98719.1| tRNA CCA-pyrophosphorylase [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 407
Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats.
Identities = 101/407 (24%), Positives = 173/407 (42%), Gaps = 17/407 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
I+ + ++ VGG VRD+++ + D+DIAT+ P V ++F + + T
Sbjct: 12 AAKPIIETIEAAGYEAYFVGGCVRDTILGKPLHDVDIATSAFPAEVKQLFK----RTVDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ I+ ++ TT R++ R +V F R K D RRDFTINAL
Sbjct: 68 GIEHGTVMILDHGNGYETTTFRTESGYQDFRRPDQVTFVRSLKEDLKRRDFTINALAMTA 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL D+ ++ +G A R ED LR++R RF + G I+S A
Sbjct: 128 NGEVIDLFDGLADMEQGILRAVGVAEERFHEDALRMMRAVRFASQLGF-TIESQTEQAIA 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIV-HMYNGGIFKEIFLDVQEISLDQLSQVI 250
L ++ ER E KLL ++P+ + + + QE L QL +
Sbjct: 187 DNAALLAKIAVERTRVEWEKLLMGQHPVAGLTGLLTTDLYRYMPAMADQEAMLRQLMALP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+LL + + D+ ++ + K + E+ + + K
Sbjct: 247 AWHLPSIESTWTLLSWTMQ--RTDEAAVRQLLKTWKTSNELINHVTAAIKALMALKHNGQ 304
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
++ FY G + + ++ L + QD ++Q + + K + G D+
Sbjct: 305 LTAQENFY-TGLEALKTANQVATILGFG----QDQAQLVQSYASLPIHDKHELAINGGDL 359
Query: 371 VKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+K + PG +G IL C Q + Q+ L R ++A S+
Sbjct: 360 LKAKLVTPGPMMGQILAACLQAVVMKQVPNQQDALLDFAR-MVADSK 405
>gi|328467369|gb|EGF38447.1| tRNA CCA-pyrophosphorylase [Lactobacillus helveticus MTCC 5463]
Length = 399
Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats.
Identities = 92/399 (23%), Positives = 174/399 (43%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F+K+ I T
Sbjct: 14 AMPVLQTLEDAGFEAYFVGGSVRDLLLDRHVHDVDITTSAYPEEVKELFAKS----IDTG 69
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D
Sbjct: 70 IRHGTVTVLYGGESYEITTFRTESGYQDYRRPDHVTFVQNLDEDLKRRDFTINALAMDLY 129
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D G+ DL+N I+ +GD R ED LR++R RF + + N++ A
Sbjct: 130 GQIVDLFNGVEDLKNHIIRAVGDPEKRFHEDALRMMRAVRFTSQL-KFNLEEKTEQAIKD 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ LK +S ERI E K+ + A + + +++ +L Q+
Sbjct: 189 NHELLKKISVERIREEFVKMGIGPHSRQAFQIFLDTQLSEDVP---DFAGKKELLQIYPQ 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
Q SL I+++ K I + + + + + +
Sbjct: 246 LQFSPTLETSLWSLIIILLKLPDKDISKFMRDWKNSNAMTEQVERIIKFFDLISDHTPND 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ G++ +I + + L + ++ + K + G ++K
Sbjct: 306 Y--ELFQAGERTIINTIDVAHIL----GQPVASEALVDRYLALPIKKPAELAIDGRFLIK 359
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+G+ PG ++G+ L ++ ++S + S + + L L
Sbjct: 360 HGMRPGAELGHTLNKIRELVVSSRLENSPDAIEKYLEDL 398
>gi|149728339|ref|XP_001496927.1| PREDICTED: tRNA nucleotidyl transferase, CCA-adding, 1 isoform 1
[Equus caballus]
Length = 434
Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats.
Identities = 117/404 (28%), Positives = 202/404 (50%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QD+D ATT P ++ +F +
Sbjct: 40 LFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDVDFATTATPAQMKEMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D++TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNKGEKHGTITARLHEENFEITTLRIDVVTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K + D +
Sbjct: 160 LGFDGTLFDYFNGYEDLQNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKLGDHDPET 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + +N ++H+ SL++
Sbjct: 220 LEAIAENAKGLAAISGERIWVELKKILVGNH-VNHLIHLIYDLDVAPYIGLPANASLEEF 278
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+V + + K +LL + + + + + + +E + + +
Sbjct: 279 DKVSKNVEGLSPKPMTLLASLFKVQDD----VTKLDLRLKISKEEKNLGLFIVKN--RKD 332
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + + Y D ++ ++ L +Q + L ++ W P FP++
Sbjct: 333 LIKATDSSEPLKPYQDFIIDSRESDATTRVCELLKYQGEQCL---LKEMQQWSIPPFPVS 389
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L ++ W S +Q+ +++L ++K
Sbjct: 390 GHDIRKVGISSGKEIGALLQQLRERWKKSGYQMEKDELLSYIKK 433
>gi|299783194|gb|ADJ41192.1| Polynucleotide adenylyltransferase region [Lactobacillus fermentum
CECT 5716]
Length = 400
Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats.
Identities = 101/404 (25%), Positives = 166/404 (41%), Gaps = 16/404 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
ILS + + ++ VGG VRD+++NL + DIDIAT+ P + +IFS + +
Sbjct: 11 EPARPILSRIEEAGFEAYFVGGCVRDTILNLPIHDIDIATSAYPAEIKQIFS----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ I+ ++ TT R++ R V F R K D RRDFTINAL
Sbjct: 67 TGIEHGTVMILDHGTGYETTTFRTESGYQDFRRPDSVTFVRSLKEDLQRRDFTINALALK 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G V+D GL DL+ IK +GD R ED LR++R RF A G + I+ L
Sbjct: 127 EDGTVVDLFDGLGDLKRHLIKAVGDPAERFHEDALRMMRAARFAAKLGFQ-IEPGTLAGM 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L+ ++ ERI E KLL K N + M + + ++E L +
Sbjct: 186 SQNAALLEKIAVERIQVEFEKLLLGKAVQNGLATMLDTKL-YLHCPGLKE-GGQGLQYLA 243
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + + + DK + K + L + + +K +
Sbjct: 244 QQPLTLNNATQAWGALAICL-GLDKNQLRPFLKGWKLSNGLITAVSRAVP--LVEKLTTK 300
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
Y G + + + I +L D + + + L G D+
Sbjct: 301 XAGASDLYQAGQQAVADAVVIANSLGGQ----VDPQAVQAAYQALPIKESGELALNGGDL 356
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+K G PG +G L ++ + + L +L+ +
Sbjct: 357 IKAGFKPGPAMGKALTTLTKQVVEGQLANDYQTLLKAAGELLKA 400
>gi|322377862|ref|ZP_08052351.1| polyA polymerase [Streptococcus sp. M334]
gi|321281285|gb|EFX58296.1| polyA polymerase [Streptococcus sp. M334]
Length = 399
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 97/399 (24%), Positives = 180/399 (45%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T
Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++S+ A
Sbjct: 129 GEIIDLFHGLEDLENQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ELESETFKAMKT 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ K + R+ + ++ + +
Sbjct: 246 ETNFTFE-SSEQAWAALLWALEIENAQPFLKAWKTSRQFAKQVQDLLTTLALREKGELSK 304
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L L + I ++ + K + G ++K
Sbjct: 305 RDCYRFD------LDLLLQAENLRQAQGKPVNPQAITEIYQSLTIHDKKEIQINGGILIK 358
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++ +H LR+
Sbjct: 359 EYGYQPGPDLGEILTEIEYAIVDGELENDRQAIHTYLRE 397
>gi|313902546|ref|ZP_07835947.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermaerobacter subterraneus DSM 13965]
gi|313467232|gb|EFR62745.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermaerobacter subterraneus DSM 13965]
Length = 610
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 105/448 (23%), Positives = 184/448 (41%), Gaps = 51/448 (11%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ IL L++ + +VGG VRD LM +D D+AT PD V R+F + IPT
Sbjct: 158 PVREILQRLDQHGYGAFLVGGCVRDLLMARPPKDWDVATAARPDEVRRLFP----RTIPT 213
Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKV-VFTRDWKADSLRRDFTINALYADQ 131
I +GT+ + R ++TT R + +D R+ FTRD +AD RRD TINA+ D
Sbjct: 214 GIEHGTVTVRLRGMSVEVTTFRQEAGYSDHRHPDRVEFTRDLRADLERRDLTINAMALDH 273
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
QG++ D +GGL+DL ++ +GD R ED LR+LR RF A G ++ A
Sbjct: 274 QGRLHDPLGGLDDLEQGLVRAVGDPEERFREDALRLLRVVRFAARLGY-RVEPRTGAALA 332
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ ++ +S ERI E+ LL + P + + G+ + I+ ++ E +D V
Sbjct: 333 RCASLIRHVSWERIREEMAGLLTSPRPAWGLELLRTSGLLEPIWPELLE-GVDVPQNVHH 391
Query: 252 AEQVFEWKIDSLL------------------------------RFIVLISWQDKKSILSM 281
A V+E + + R + M
Sbjct: 392 AYTVWEHNLLACEYTPPVLRLRLAGLLHDVGKPRTVSVDAQGERHFYHHEVVGAQMARDM 451
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKT---LSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
++ E ++ + ++ I++L G + + + +A
Sbjct: 452 LRRLRFDNETVQHVVHLVRHHLALHHYPGMTDAAIRRLIQRIGFDYLEDLIILRVADRAA 511
Query: 339 NLTHQDTC---------FILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHC 388
+ T + + ++L + + G DV+ G+ PG +G IL
Sbjct: 512 SGTKRAPISRGAYRLLTRMEKILEQDAAFSLHDLAVDGHDVMAATGLGPGPAIGWILQQL 571
Query: 389 KQEWINSSFQLSQEDLHHLLRKLIASSQ 416
++ ++ + +E L +L ++
Sbjct: 572 LEDVLDEPARNRREWLLERAAQLRGEAE 599
>gi|295094343|emb|CBK83434.1| uncharacterized domain HDIG [Coprococcus sp. ART55/1]
Length = 443
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 103/443 (23%), Positives = 174/443 (39%), Gaps = 50/443 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++ L ++ IVGG VRDS++ D DI T+ P++V IF + +
Sbjct: 7 EGANKVIEGLEAAGYEAYIVGGCVRDSILGREPGDWDITTSARPEQVKEIFR----RTVD 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ K+ +++TT R + R +V FT + D RRDFTINA+
Sbjct: 63 TGIEHGTVTVMMGKEGYEVTTYRIDGEYSDHRRPDQVEFTASLEEDLKRRDFTINAMAYS 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ID GG+ DL ++ I+ +G A R ED LRILR RF G
Sbjct: 123 HSKGIIDMFGGVQDLNDKVIRAVGVARDRFDEDALRILRAIRFAGQLGFDIERDTRKAMI 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ-- 248
I+A+ K +S+ERI E+ KLL + +P + Y GI I + ++ +
Sbjct: 183 IQAQYL-KDISAERIRVELTKLLVSDHPDKLLEA-YVTGITAYILPEFDKMMEQPQNNQY 240
Query: 249 ------VIEAEQVFEWKIDSLLRFIVLISWQDKKS----------------------ILS 280
V E V + D +R+ L+ K S S
Sbjct: 241 HRYNVGVHSIEAVKNIRADVTMRWAALLHDIGKPSTHTVDENGTDHFYDHQIAGVPLAES 300
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTL--SIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
+ ++ + + I+KL G ++I A
Sbjct: 301 VLRRLKFDNNTIKDVCKLVRWHDFGMGCVPKKNTIRKLLGEVGKDFFPYIIEIKKADMAA 360
Query: 339 NLTHQDTCF----------ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
++ ++++D + + G D++K GI PG ++G IL
Sbjct: 361 QSDYKLEERQSQLAELEKKYEEIVADADCVRIKDLKVNGGDLIKLGIKPGPQMGEILQKL 420
Query: 389 KQEWINSSFQLSQEDLHHLLRKL 411
I + +E L ++++
Sbjct: 421 LDMVIEDPEKNGREYLLDQVKQM 443
>gi|56417163|ref|YP_154237.1| poly (A) polymerase [Anaplasma marginale str. St. Maries]
gi|222475528|ref|YP_002563945.1| poly (A) polymerase (pcnB) [Anaplasma marginale str. Florida]
gi|56388395|gb|AAV86982.1| poly (A) polymerase [Anaplasma marginale str. St. Maries]
gi|222419666|gb|ACM49689.1| poly (A) polymerase (pcnB) [Anaplasma marginale str. Florida]
Length = 419
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 118/386 (30%), Positives = 181/386 (46%), Gaps = 10/386 (2%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D ++ I+ + + +VGG VRDS++ DID+AT ++P+ V++ K I
Sbjct: 8 DPGVVRIVEAIEGARGNARLVGGCVRDSVLGRDTTDIDLATDLVPEMVIQALGSAGIKTI 67
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
PT I +GT+ + ++ITTLR DL DGR+A V FT W D+ RRDFT NALY D+
Sbjct: 68 PTGIKHGTVTAVVAGIPYEITTLRRDLECDGRHAAVAFTNSWMEDASRRDFTFNALYCDK 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-S 190
GK+ DY G+ DL NRT+ FIGDA RI ED+LRILR FRF A +K+ S+ ++
Sbjct: 128 SGKIYDYFSGMQDLENRTVVFIGDAEARINEDFLRILRVFRFHASICDKSPLSEEIIFLC 187
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K L LS ERI SE KLL N + + M G+ ++ + + +LS
Sbjct: 188 NKYADSLAKLSRERIRSEFFKLLACTNCASTLKIMEGCGVLHQVVP--YPVQIGRLSCTH 245
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
A + K+ ++L+ D + + L+ LS
Sbjct: 246 LAGRAPITKLAAILKGYAHT---DMSGTVEGLEALLRLSRKEKKLLETLLTTNLPFPLST 302
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ +K G + + + + + L+ L + P++G D+
Sbjct: 303 TQQQKYLNDLG----TDVYRDLVIVSFLSKETLSASAFLEHLEYTKQFAPLSLPVSGKDL 358
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSS 396
K G GK +G+ L K+ W +
Sbjct: 359 AKLGYKEGKLLGHTLKRLKETWERNP 384
>gi|307705974|ref|ZP_07642799.1| RNA nucleotidyltransferase [Streptococcus mitis SK564]
gi|307620484|gb|EFN99595.1| RNA nucleotidyltransferase [Streptococcus mitis SK564]
Length = 394
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 95/399 (23%), Positives = 178/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIIDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ELEPETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMAASQDKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQPFLKAWKTSRQFAKQVQDLLTILALREKGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L +L + I + + K + G ++K
Sbjct: 300 RDCYRFD------LDLLLQAESLRQAQGKPVNPQAITETYQSLTIHDKKEIQINGGILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++ +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENDRQAIHAYLRE 392
>gi|307706183|ref|ZP_07643001.1| RNA nucleotidyltransferase [Streptococcus mitis SK321]
gi|307618443|gb|EFN97592.1| RNA nucleotidyltransferase [Streptococcus mitis SK321]
Length = 394
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 98/399 (24%), Positives = 179/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL+DL + ++ +G A R ED LRI+R FRF A G ++S+ A
Sbjct: 124 GEIIDLFHGLDDLGKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ELESETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ E
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMAASQDKLNRLFEL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ D ++ K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALDIENAQPFLKAWKTSRQFAKQVQDLLTILALREKGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L L + I + + K + G ++K
Sbjct: 300 RDCYRFD------LDLLLQAENLRQAQGKPVNPQVITETYQSLTIHDKKEIQINGGILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++ +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENDRQAIHAYLRE 392
>gi|322372335|ref|ZP_08046871.1| polyA polymerase [Streptococcus sp. C150]
gi|321277377|gb|EFX54446.1| polyA polymerase [Streptococcus sp. C150]
Length = 400
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 95/402 (23%), Positives = 175/402 (43%), Gaps = 16/402 (3%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + IL + ++ VGG+VRD+L+N + D+DIA++ P+ ++F + +
Sbjct: 12 EALPILEKIKAAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQVFE----RTVDI 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ +++TT R++ + R + V F R + D RRDFT+NA ++
Sbjct: 68 GIEHGTVLVLENGGEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+VID GL DL NR ++ +G A R ED LRI+R RF A +I+ A
Sbjct: 128 NAEVIDKFNGLADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASLDF-DIEEKTFEAMT 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ER + E +KLL A + I + ++ + D QE + S V +
Sbjct: 187 SHAPLLEKISIERSFIEFDKLLLAPHWKKGIKALLETKAYQYL-PDFQETAEKWQSFVAD 245
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ F + S + + + S KK+ + + S + ++
Sbjct: 246 YAEGFRFT-SSEQAWAATLLALKHDNPRSFLKKWKTSVNFQKTVQSLVGIFKFRMERAVT 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y YG + L+ L D I ++ ++ K + G ++
Sbjct: 305 KP--DVYQYGKE----LLEEAEGLRQAQGLTVDYERIAELDGQLLIHDKHEIVVNGGMLM 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K G PG +G L + +N + +E + ++ +
Sbjct: 359 KELGFKPGPDLGRALKAIENTIVNGNLANDKEAIIAFVQAMK 400
>gi|227515169|ref|ZP_03945218.1| tRNA adenylyltransferase [Lactobacillus fermentum ATCC 14931]
gi|260662126|ref|ZP_05863022.1| polynucleotide adenylyltransferase region [Lactobacillus fermentum
28-3-CHN]
gi|227086501|gb|EEI21813.1| tRNA adenylyltransferase [Lactobacillus fermentum ATCC 14931]
gi|260553509|gb|EEX26401.1| polynucleotide adenylyltransferase region [Lactobacillus fermentum
28-3-CHN]
Length = 400
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 101/404 (25%), Positives = 166/404 (41%), Gaps = 16/404 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
ILS + + ++ VGG VRD+++NL + DIDIAT+ P + +IFS + +
Sbjct: 11 EPARPILSRIEEAGFEAYFVGGCVRDTILNLPIHDIDIATSAYPAEIKQIFS----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ I+ ++ TT R++ R V F R K D RRDFTINAL
Sbjct: 67 TGIEHGTVMILDHGTGYETTTFRTESGYQDFRRPDSVTFVRSLKEDLQRRDFTINALALK 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G V+D GL DL+ IK +GD R ED LR++R RF A G + I+ L
Sbjct: 127 EDGTVVDLFDGLGDLKRHLIKAVGDPAERFHEDALRMMRAARFAAKLGFQ-IEPGTLAGM 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L+ ++ ERI E KLL K N + M + + ++E L +
Sbjct: 186 SQNAALLEKIAVERIQVEFEKLLLGKAVQNGLATMLDTKL-YLHCPGLKE-GGQGLQYLA 243
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + + + DK + K + L + + +K +
Sbjct: 244 QQPLTLNNATQAWGALAICL-GLDKNQLRPFLKGWKLSNGLITAVSRAVP--LVEKLTTK 300
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
Y G + + + I +L D + + + L G D+
Sbjct: 301 AAGASDLYQAGQQAVADAVVIANSLGGQ----VDPQAVQAAYQALPIKESGELALNGGDL 356
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+K G PG +G L ++ + + L +L+ +
Sbjct: 357 IKAGFKPGPAMGKALTTLTKQVVEGQLANDYQTLLKAAGELLKA 400
>gi|91762765|ref|ZP_01264730.1| Poly(A) Polymerase (PAP) [Candidatus Pelagibacter ubique HTCC1002]
gi|91718567|gb|EAS85217.1| Poly(A) Polymerase (PAP) [Candidatus Pelagibacter ubique HTCC1002]
Length = 424
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 112/401 (27%), Positives = 190/401 (47%), Gaps = 8/401 (1%)
Query: 11 HDSDLINILSLLNKG--EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
++++ I ++ + VGG VR + + DID+A + P V +K
Sbjct: 27 KETEVSKIFEAIHSYSSNSEIRYVGGCVRKIINKEAYDDIDLAVNLNPKEVCEALTKKDI 86
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
K + I +GTI + F+IT+LR D+ TDGR+AKV F+ WK D+ RRDFTIN++Y
Sbjct: 87 KYYASGIEHGTITALINDIKFEITSLRKDIDTDGRHAKVEFSDSWKEDASRRDFTINSIY 146
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
AD +G + D G DL + I FIG+ RI EDYLR+LR+ RFF Y + + D +
Sbjct: 147 ADIEGSLFDPFDGKKDLESGKINFIGNVETRIKEDYLRVLRYVRFFLSYSKHSHDPQVIK 206
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K G+ +SSER+ E KLL++ L I IF ++ ISL
Sbjct: 207 AIKKNLSGVSSISSERLIDEFQKLLKSNGFLKLTKDKDCLEIINLIFPQIKNISLFNKMN 266
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ E LL +++ + + ++ FL F +T
Sbjct: 267 SFAKKNFLEMDFIFLLSLMIIDGTDNVDYFIYKFNLSKKDQKRLIFLNKFNLEKNTNQTF 326
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
S + K+FY G + ++ L + + + +++++ + P+ P
Sbjct: 327 SEKNLNKIFYFNGREALLDVLYFKIF-----KSKKVDNKLIKMIEIFKKKEMPVMPFKAS 381
Query: 369 DVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ KY IP G+++G L ++ W ++ F++S ++L ++
Sbjct: 382 TLMEKYQIPEGRELGQKLKAIEEVWTSNDFKISDKELQKIV 422
>gi|322806644|emb|CBZ04213.1| tRNA nucleotidyltransferase [Clostridium botulinum H04402 065]
Length = 450
Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats.
Identities = 99/440 (22%), Positives = 181/440 (41%), Gaps = 42/440 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK++P
Sbjct: 12 KGVEYIINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIVP 71
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T + +GT+ I+ +++TT R + + R +V FT + + D RRD TINA+ +
Sbjct: 72 TGLKHGTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLREDLKRRDLTINAMAYN 131
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++DY GL DL N+ I+ +G++ R ED LR+LR RF + ++ +
Sbjct: 132 DKIGLVDYFYGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNF-CMEESIKLNI 190
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K + + +S ERI E+ K+L + P+ I ++ + I +++ + +
Sbjct: 191 RKLSRNIANVSMERIRDELCKILVSSQPVYGIRNIVELNLMDYIIPELKACVGFEQHNIH 250
Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDKKSIL----------------------S 280
+ V+ LR L+ K
Sbjct: 251 HDKDVYGHILSVVENVPNKLELRLAALLHDIGKPRCFSIGDNGQGHFYGHQKISADMTKD 310
Query: 281 MAKKFSLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ K+ + + + L P IKK G + ++ +A +
Sbjct: 311 ILKRLKFDNKTIDKVDKLVYNHMTRYNKLRTPNIKKFINKVGIDNLDDLFELQIADIKGS 370
Query: 340 LTHQD--------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
++LS+ + G D++K GI GK++G +L
Sbjct: 371 AKEYHSFDNVLNLKIKCEKILSEKQPLTIKDLDINGYDLMKLGINQGKEIGIMLNKLLDI 430
Query: 392 WINSSFQLSQEDLHHLLRKL 411
+ + ++EDL ++ +
Sbjct: 431 ILENPNLNNKEDLIKIVESI 450
>gi|148380252|ref|YP_001254793.1| polyA polymerase family protein [Clostridium botulinum A str. ATCC
3502]
gi|153930928|ref|YP_001384558.1| polyA polymerase family protein [Clostridium botulinum A str. ATCC
19397]
gi|153936961|ref|YP_001388074.1| polyA polymerase family protein [Clostridium botulinum A str. Hall]
gi|148289736|emb|CAL83842.1| Poly A polymerase family protein [Clostridium botulinum A str. ATCC
3502]
gi|152926972|gb|ABS32472.1| polyA polymerase family protein [Clostridium botulinum A str. ATCC
19397]
gi|152932875|gb|ABS38374.1| polyA polymerase family protein [Clostridium botulinum A str. Hall]
Length = 450
Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats.
Identities = 101/441 (22%), Positives = 181/441 (41%), Gaps = 42/441 (9%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK+I
Sbjct: 11 SKGVEYIINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKII 70
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYA 129
PT + +GT+ I+ +++TT R D + R+ K FT + + D RRD TINA+
Sbjct: 71 PTGLKHGTVTILINSIGYEVTTFRVDGEYEDNRHPKEVKFTSNLREDLKRRDLTINAMAY 130
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + ++DY GL DL N+ I+ +G++ R ED LR+LR RF + ++ +
Sbjct: 131 NDKIGLVDYFYGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNF-CMEESIKLN 189
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
K + + +S ERI E+ K+L + P+ I ++ + I +++ + +
Sbjct: 190 IRKLSRNIANVSMERIRDELCKILVSSQPVYGIRNIVELNLMDYIIPELKACVGFEQHNI 249
Query: 250 IEAEQVFEW--------KIDSLLRFIVLISWQDKKSIL---------------------- 279
+ V+ LR L+ K
Sbjct: 250 HHDKDVYGHILSVVENVPNKLELRLAALLHDIGKPRCFSIGDNGQGHFYGHQKISADMTK 309
Query: 280 SMAKKFSLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
+ K+ + + + L P IKK G + ++ +A
Sbjct: 310 DILKRLKFDNKTIDKVDKLVYNHMTRYNKLRTPNIKKFINKVGIDNLDDLFELQIADIKG 369
Query: 339 NLTHQD--------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390
+ ++LS+ + G D++K GI GK++G +L
Sbjct: 370 SAKEYHSFDNVLNLKIKCEKILSEKQPLTIKDLDINGYDLMKLGINQGKEIGIMLNKLLD 429
Query: 391 EWINSSFQLSQEDLHHLLRKL 411
+ + ++EDL ++ +
Sbjct: 430 IILENPNLNNKEDLIKIVESI 450
>gi|116629563|ref|YP_814735.1| tRNA CCA-pyrophosphorylase [Lactobacillus gasseri ATCC 33323]
gi|238853078|ref|ZP_04643470.1| tRNA adenylyltransferase/tRNA cytidylyltransferase [Lactobacillus
gasseri 202-4]
gi|282852058|ref|ZP_06261416.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Lactobacillus gasseri 224-1]
gi|311110793|ref|ZP_07712190.1| poly A polymerase [Lactobacillus gasseri MV-22]
gi|122273499|sp|Q043S5|CCA_LACGA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|116095145|gb|ABJ60297.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus
gasseri ATCC 33323]
gi|238834326|gb|EEQ26571.1| tRNA adenylyltransferase/tRNA cytidylyltransferase [Lactobacillus
gasseri 202-4]
gi|282556818|gb|EFB62422.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Lactobacillus gasseri 224-1]
gi|311065947|gb|EFQ46287.1| poly A polymerase [Lactobacillus gasseri MV-22]
Length = 398
Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats.
Identities = 88/397 (22%), Positives = 161/397 (40%), Gaps = 16/397 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF K I T
Sbjct: 12 AALPVLKRINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFK----KTIDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL
Sbjct: 68 GIKHGTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMGV 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G VID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A
Sbjct: 128 DGNVIDHFDGLGDLDKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETERAIS 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L +S ERI E K+ A A ++ E + + +
Sbjct: 187 DNHELLSKISVERIRDEFVKMGIAPGSQKAFQ-IFLDTGLSEEVPGFKGKKDN--LALYP 243
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+L ++++ + I S + + + + S
Sbjct: 244 QLNFSPTTEANLWALMIILLKLPNEKIPSFMRMWKNSNAMERQVADIVTFFDL--VSSRA 301
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y G + + + + + L + ++ + + G ++
Sbjct: 302 PSNYDLYQAGLETIASTIDLAHIL----GQPINGSALVDRYEALPIKNNHDLVIDGHFLL 357
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K G+P G +VG +L K+ + ++ + L
Sbjct: 358 KNGVPAGPRVGLLLEEIKKAVLEGVISNNEAAITEFL 394
>gi|300767473|ref|ZP_07077385.1| tRNA adenylyltransferase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300495292|gb|EFK30448.1| tRNA adenylyltransferase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 407
Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats.
Identities = 100/407 (24%), Positives = 172/407 (42%), Gaps = 17/407 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
I+ + ++ VGG VRD+++ + D+DIAT+ P V ++F + + T
Sbjct: 12 AAKPIIETIEAAGYEAYFVGGCVRDTILGKPLHDVDIATSAFPAEVKQLFK----RTVDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ I+ ++ TT R++ R +V F R K D RRDFTINAL
Sbjct: 68 GIEHGTVMILDHGNGYETTTFRTESGYQDFRRPDQVTFVRSLKEDLKRRDFTINALAMTA 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL D+ ++ +G A R ED LR++R RF + G I+S A
Sbjct: 128 NGEVIDLFDGLADMEQGILRAVGVAEERFHEDALRMMRAVRFASQLGF-TIESQTEQAIA 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIV-HMYNGGIFKEIFLDVQEISLDQLSQVI 250
L ++ ER E KLL ++P+ + + + QE L QL +
Sbjct: 187 DNAALLAKIAVERTRVEWEKLLMGQHPVAGLTGLLTTDLYRYMPAMADQEAMLRQLMALP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+LL + + D+ ++ + K + E+ + + K
Sbjct: 247 AWHLPSIESTWTLLSWTMQ--RTDEAAVRQLLKTWKTSNELINHVTAAIKALMALKHNGQ 304
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
++ FY G + + ++ L + Q ++Q + + K + G D+
Sbjct: 305 LTAQENFY-TGLEALKTANQVATILGFGQGQAQ----LVQSYASLPIHDKHELAINGGDL 359
Query: 371 VKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+K + PG +G IL C Q + Q+ L R ++A S+
Sbjct: 360 LKAKLVTPGPMMGQILAACLQAVVMKQVPNQQDALLDFAR-MVADSK 405
>gi|126738475|ref|ZP_01754180.1| polyA polymerase family protein [Roseobacter sp. SK209-2-6]
gi|126720274|gb|EBA16980.1| polyA polymerase family protein [Roseobacter sp. SK209-2-6]
Length = 384
Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 119/410 (29%), Positives = 187/410 (45%), Gaps = 28/410 (6%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
+ + W + + L + VGG VR++LM + V DIDIAT P+ V+
Sbjct: 1 MRLAGQPWLQHPATQRVCAALTAKGAAAYFVGGCVRNALMGVPVSDIDIATDATPEEVLE 60
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ K IPT I +GT+ ++ ++TT R D+ TDGR A V F++D D+ RRD
Sbjct: 61 LARAAGIKAIPTGIDHGTVTLVEGHIPHEVTTFRRDVATDGRRAVVAFSKDIAEDAARRD 120
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FT+NALYA G ++D + GL DL +R ++FIGDA RI ED+LR LR+FRF A YG +
Sbjct: 121 FTMNALYARPDGALVDPLKGLPDLEHRRVRFIGDAGARIREDHLRTLRYFRFHAWYGNHD 180
Query: 182 --IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
D + L A + +GL LS ERI SE+ KLL A++P A+ M G+ +I
Sbjct: 181 AGFDPEALAAIAENLEGLAKLSKERITSELLKLLAAEDPAPALAIMRQTGLLGQILPGAD 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ +L L + D + R L + + + +
Sbjct: 241 DRALAPLVHL-----EGSIAPDPIRRLAALGGVELQAHLRLSK------------SQTRL 283
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ + Q + +L Y G + + L + + +
Sbjct: 284 HEHLRQAAIGTAGAAELSYRMGRNFAHGAMLLRATLLEQPVEP-------DLERKLQQGA 336
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
P+T D++ G+ G +G L + WI S F L +++L + L+
Sbjct: 337 AAKLPVTAQDLMP-GL-SGAALGKALKQLETGWIASGFALGRDELLNSLK 384
>gi|187779033|ref|ZP_02995506.1| hypothetical protein CLOSPO_02628 [Clostridium sporogenes ATCC
15579]
gi|187772658|gb|EDU36460.1| hypothetical protein CLOSPO_02628 [Clostridium sporogenes ATCC
15579]
Length = 450
Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats.
Identities = 101/440 (22%), Positives = 181/440 (41%), Gaps = 42/440 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK+IP
Sbjct: 12 KGVEYIINTLQENNYEAYIVGGAVRDSLLERKVNDWDITTSADPQEVVNIFENLGYKIIP 71
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T + +GT+ I+ +++TT R + + R +V FT + K D RRD TINA+ +
Sbjct: 72 TGLKHGTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLKEDLKRRDLTINAMAYN 131
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +IDY GL DL N+ I+ +G++ R ED LR+LR RF + ++
Sbjct: 132 DKKGLIDYFHGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNFH-MEESTKFNI 190
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ K + +S ERI E+ K+L + P+ I ++ + I ++++ + +
Sbjct: 191 RELSKNINNVSMERIRDELCKILVSSQPVYGIRNIVELNLVDYIIPELKDCVGFEQHNIH 250
Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDKKSIL----------------------S 280
+ V+ LR L+ K
Sbjct: 251 HDKDVYGHILSVVENVPNKLELRLAALLHDIGKPKCFSIGDNGQGHFYGHQKISADMTKH 310
Query: 281 MAKKFSLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ K+ + + + L P IKK G + ++ +A +
Sbjct: 311 ILKRLKFDNKTIDKVDKLVYNHMTRYNKLRTPSIKKFINKVGIDNLDDLFELQIADIKGS 370
Query: 340 LTHQD--------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
++LS+ + G D++K GI G+++G +L
Sbjct: 371 AKEYHSFNNILNLKIKCEKILSEKQPLTIKDLDIDGHDLIKLGIKQGEEIGIVLNKLLDI 430
Query: 392 WINSSFQLSQEDLHHLLRKL 411
+ + ++EDL ++ +
Sbjct: 431 ILENPNLNNKEDLIKIVESI 450
>gi|300361590|ref|ZP_07057767.1| tRNA adenylyltransferase [Lactobacillus gasseri JV-V03]
gi|300354209|gb|EFJ70080.1| tRNA adenylyltransferase [Lactobacillus gasseri JV-V03]
Length = 398
Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats.
Identities = 90/397 (22%), Positives = 162/397 (40%), Gaps = 16/397 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF K I T
Sbjct: 12 AALPVLKQINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFK----KTIDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D
Sbjct: 68 GIKHGTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMDV 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G VID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A
Sbjct: 128 DGNVIDHFDGLGDLDKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETEQAIS 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L +S ERI E K+ A A ++ E + + +
Sbjct: 187 DNHELLSKISVERIRDEFVKMGIAPGSQKAFQ-IFLDTGLSEEVPGFK--GKKENLALYP 243
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+L ++++ + I S + + + + S
Sbjct: 244 QLNFSPTTEANLWALMIILLKLPNEKIPSFMRMWKNSNAMERQVADIVAFFDLI--SSRA 301
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y G + + + + + L + ++ + + G ++
Sbjct: 302 PNNYDLYQAGLETIASTIDLAHIL----GQPINGSALVDGYEALPIKNSHDLVIDGHFLL 357
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K GIP G +VG +L K+ + ++ + L
Sbjct: 358 KNGIPAGPRVGLLLEEIKKAVLEGVISNNEAAITEFL 394
>gi|160895413|ref|ZP_02076182.1| hypothetical protein CLOL250_02970 [Clostridium sp. L2-50]
gi|156862915|gb|EDO56346.1| hypothetical protein CLOL250_02970 [Clostridium sp. L2-50]
Length = 473
Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats.
Identities = 96/445 (21%), Positives = 165/445 (37%), Gaps = 50/445 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ L ++ IVGG VRDS++ D DI T P++V +F + I
Sbjct: 34 ENAKKVIETLEAAGYEAYIVGGCVRDSILGREPGDWDITTAARPEQVKALFR----RTID 89
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ K+ +++TT R + R V FT + + D RRDFTINA+
Sbjct: 90 TGIKHGTVTVMFGKEAYEVTTYRVDGEYSDHRRPDSVEFTANLEEDLKRRDFTINAMAYS 149
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
VID GG++DL N+ IK +GD R ED LRILR RF
Sbjct: 150 PSAGVIDLFGGMDDLDNKVIKAVGDPLARFDEDALRILRAIRFAGQLDFTIERDTRKAMI 209
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
++A+ I + ++KLL + +P + Y GI I + + +
Sbjct: 210 LRAQFLQDISAERIRVE-LDKLLTSAHPEKLMEA-YVTGITAYILPEFDRMMEQPQNNPY 267
Query: 251 EAEQVFEWK--------IDSLLRFIVLISWQDKKS----------------------ILS 280
V ++ R+ L+ K
Sbjct: 268 HKYNVGVHSMEAVKVIEPTTVCRWAALLHDVGKPECHTVDENGIDHFYGHNEKGAEIARK 327
Query: 281 MAKKFSLPREIRYFLISFFNCNFN--QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
+ ++ E + + + L +K G +KI A
Sbjct: 328 VLRRLRFDNETTDLVCKMVLWHDYGLGEMLKKTTFRKALSRMGADFFPYYIKIRRADMAA 387
Query: 339 NLTHQDTCF------ILQVLSDI----IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
++ + ++ +I + G D++ G+ PGK++G+IL
Sbjct: 388 QSDYKLEERRGSIEHLEKLYQEITDAKDCLTIKQLAINGKDLIALGVKPGKEIGDILQEL 447
Query: 389 KQEWINSSFQLSQEDLHHLLRKLIA 413
+ + S ++E L + K I
Sbjct: 448 LNQVLGSPELNNRETLLSMADKYIK 472
>gi|315613527|ref|ZP_07888434.1| polyA polymerase family protein [Streptococcus sanguinis ATCC
49296]
gi|315314218|gb|EFU62263.1| polyA polymerase family protein [Streptococcus sanguinis ATCC
49296]
Length = 399
Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats.
Identities = 98/399 (24%), Positives = 179/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T
Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++S+ A
Sbjct: 129 GEIIDLFQGLEDLENQVLRAVGVASERFNEDALRIMRGFRFQASLGF-KLESETFEAMKT 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 188 LTSLLEKISVERTFVEFDKLLLAPFWRVGLSSMIESRA--YAYLPDMAGSQDKLNKLFDL 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + K K + R+ + ++ + +
Sbjct: 246 EADFTFE-SSEQAWAALLWALEIKDAQPFLKAWKTSRQFAKQVQDLLTILALREKGDLSK 304
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L +L + I + + K + G ++K
Sbjct: 305 RDCYRFD------LDSLLQAESLRQAQGKAVNPQAITETYQSLTIHDKKEIQINGGILIK 358
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++ +H LR+
Sbjct: 359 EYGYQPGPDLGEILTEIEFAIVDGELENDRQAIHAYLRE 397
>gi|301760376|ref|XP_002915988.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like
[Ailuropoda melanoleuca]
Length = 436
Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats.
Identities = 120/404 (29%), Positives = 205/404 (50%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QD+D ATT P ++ +F +
Sbjct: 40 LFTEGLKSLTELFVKENHELRIAGGAVRDLLNGIKPQDVDFATTATPAQMKDMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D++TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNKGEKHGTITARLHEENFEITTLRIDVVTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 160 LGFDGTLFDYFSGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPET 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + + I +Y+ + + L SL++
Sbjct: 220 LEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYLGLPTNA-SLEEF 278
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++V + F K +LL + + + + + + +E + I +
Sbjct: 279 NKVSKNVDGFSPKPMTLLASLFKVQDD----VTKLDLRLKISKEEKNLGIFIVKN--RKD 332
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + + Y D ++ ++ + L +Q +LQ + W P FP++
Sbjct: 333 LVKAADSSEPLKPYQDFIIDSRESEAMTRVCELLKYQGEHGLLQQMQQ---WCIPPFPVS 389
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 390 GHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433
>gi|281346452|gb|EFB22036.1| hypothetical protein PANDA_004022 [Ailuropoda melanoleuca]
Length = 434
Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats.
Identities = 120/404 (29%), Positives = 205/404 (50%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QD+D ATT P ++ +F +
Sbjct: 40 LFTEGLKSLTELFVKENHELRIAGGAVRDLLNGIKPQDVDFATTATPAQMKDMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D++TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNKGEKHGTITARLHEENFEITTLRIDVVTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 160 LGFDGTLFDYFSGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPET 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + + I +Y+ + + L SL++
Sbjct: 220 LEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYLGLPTNA-SLEEF 278
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++V + F K +LL + + + + + + +E + I +
Sbjct: 279 NKVSKNVDGFSPKPMTLLASLFKVQDD----VTKLDLRLKISKEEKNLGIFIVKN--RKD 332
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + + Y D ++ ++ + L +Q +LQ + W P FP++
Sbjct: 333 LVKAADSSEPLKPYQDFIIDSRESEAMTRVCELLKYQGEHGLLQQMQQ---WCIPPFPVS 389
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 390 GHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433
>gi|149412778|ref|XP_001506360.1| PREDICTED: similar to tRNA-nucleotidyltransferase, partial
[Ornithorhynchus anatinus]
Length = 433
Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats.
Identities = 116/409 (28%), Positives = 204/409 (49%), Gaps = 25/409 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ + K + I GGAVRD L D+D ATT PD++ +F +
Sbjct: 40 LFTQGLKSVAEIFVKENHEIRIAGGAVRDLLSGTPPHDVDFATTATPDQMKMMFKAAGVR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I ++GTI ++ F+ITTLR D++TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 LINHKGENHGTITARLHEENFEITTLRIDVMTDGRHAEVEFTTDWEKDAGRRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY--GEKNIDSDG 186
G + DY G DL+N+ ++F+G + RI EDYLRILR+FRFF + D D
Sbjct: 160 LGFDGTLYDYFNGYEDLKNKKVRFVGLPNKRIQEDYLRILRYFRFFGKIAENPDDHDPDT 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A KGL +S ERIW E+ K+L + + + MY + I L +++L++L
Sbjct: 220 LKAIKGNAKGLAGISGERIWVELKKILVGNHVEHLVRLMYELDVAYYIGLPT-DVNLEEL 278
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+V + + + L ++D+ + + + + ++ + + +
Sbjct: 279 DKVYKNTRNLSASPITFL----TSLFRDQDDVTKLDFRLKISKQEKNLALFLLKHRKDLI 334
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ------VLSDIIHWKK 360
+ + + F+ + T +L+ +L ++ +W
Sbjct: 335 KAADSS-----------EPLKPFQDFILDSRDPGTTDRIYELLKYQGEGALLKEMQNWSI 383
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
PLFP+TG D+ K GI GK++G ++ +++W S +Q+ +++L L++
Sbjct: 384 PLFPVTGHDIRKMGISSGKEIGTVIQQLREQWKKSGYQMDKDELLCLIK 432
>gi|153938706|ref|YP_001391608.1| polyA polymerase family protein [Clostridium botulinum F str.
Langeland]
gi|152934602|gb|ABS40100.1| polyA polymerase family protein [Clostridium botulinum F str.
Langeland]
gi|295319640|gb|ADG00018.1| polyA polymerase family protein [Clostridium botulinum F str.
230613]
Length = 450
Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats.
Identities = 100/440 (22%), Positives = 182/440 (41%), Gaps = 42/440 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK++P
Sbjct: 12 KGVKYIINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIVP 71
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYAD 130
T + +GT+ I+ +++TT R D + R+ K FT + + D RRD TINA+ +
Sbjct: 72 TGLKHGTVTILINSIGYEVTTFRVDGEYEDNRHPKEVKFTSNLREDLKRRDLTINAMAYN 131
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++DY GL DL N+ I+ +G++ R ED LR+LR RF + ++ +
Sbjct: 132 DKIGLVDYFHGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNFH-MEESIRLNI 190
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ + + +S ERI E+ K+L + P+ I ++ + I +++ + +
Sbjct: 191 RELSRNIANVSMERIRDELCKILVSSQPVYGIKNIVELNLMDCIIPELKVCVGFKQHNIH 250
Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDKKSIL----------------------S 280
+ V+E LR L+ K
Sbjct: 251 HDKDVYEHILSVVENVPNKLELRLAALLHDIGKPKCFSIGDNGQGHFYGHQKISADMTKD 310
Query: 281 MAKKFSLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ K+ + + + L P IKK G + ++ +A +
Sbjct: 311 ILKRLKFDNKTIDKVDKLVYNHMARYNKLRTPNIKKFINKVGIDNLDDLFELQIADIKGS 370
Query: 340 LTHQD--------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
++LS+ + G D++K GI GK++G +L
Sbjct: 371 AKEYHSFDNVLNLKIKCEKILSEKQPLTIKDLDINGYDLMKLGINQGKEIGIMLNKLLDI 430
Query: 392 WINSSFQLSQEDLHHLLRKL 411
+ + ++EDL ++ +
Sbjct: 431 ILENPNLNNKEDLIKIVESI 450
>gi|322517342|ref|ZP_08070217.1| polyA polymerase family protein [Streptococcus vestibularis ATCC
49124]
gi|322124039|gb|EFX95592.1| polyA polymerase family protein [Streptococcus vestibularis ATCC
49124]
Length = 400
Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats.
Identities = 91/401 (22%), Positives = 176/401 (43%), Gaps = 16/401 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + ++ VGG+VRD+L+N + D+DIA++ P+ +IF + +
Sbjct: 13 ALPILEKIKAAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFE----RTVDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ +++TT R++ + R + V F R + D RRDFT+NA ++
Sbjct: 69 IEHGTVLVLENGGEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNEN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++ID GL DL NR ++ +G A R ED LRI+R RF A +I+ A
Sbjct: 129 AEIIDKFNGLADLDNRVLRAVGKAEERFNEDALRIMRGLRFTASLDF-DIEEKTFQAMAS 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + I + ++ + D QE + + V +
Sbjct: 188 HAPLLEKISIERSFIEFDKLLLAPHWKKGIKALLATKAYQYL-PDFQETAEEWQDFVADY 246
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ F + S + + + S KK+ + + S + + ++ +
Sbjct: 247 VEGFRFT-SSEQAWAATLLALKHDNPRSFLKKWKTSVNFQKTVQSLVDIFNFRLERAVTK 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ Y YG +++ + D I ++ ++ K + G ++K
Sbjct: 306 --QDVYQYGKELLEEAETLR----RAQGLDVDYERIAELDGQLLIHDKHEIVVNGGTLMK 359
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
G PG +G L + ++ ++E + ++ +
Sbjct: 360 ELGFKPGPDLGRALKAIENAIVDGQLANAEEAIMAFVQAMK 400
>gi|296452848|sp|Q96Q11|TRNT1_HUMAN RecName: Full=CCA tRNA nucleotidyltransferase 1, mitochondrial;
AltName: Full=Mitochondrial tRNA nucleotidyl
transferase, CCA-adding; AltName: Full=mt CCA-adding
enzyme; AltName: Full=mt tRNA CCA-diphosphorylase;
AltName: Full=mt tRNA CCA-pyrophosphorylase; AltName:
Full=mt tRNA adenylyltransferase; Flags: Precursor
Length = 434
Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats.
Identities = 118/404 (29%), Positives = 199/404 (49%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QDID ATT P ++ +F +
Sbjct: 40 LFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 160 LGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPET 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + +N ++H+ SL++
Sbjct: 220 LEAIAENAKGLAGISGERIWVELKKILVGNH-VNHLIHLIYDLDVAPYIGLPANASLEEF 278
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+V + F K +LL + + + + + + +E + + +
Sbjct: 279 DKVSKNVDGFSPKPVTLLASLFKVQDD----VTKLDLRLKIAKEEKNLGLFIVKN--RKD 332
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + Y D ++ ++ L +Q + L ++ W P FP++
Sbjct: 333 LIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCL---LKEMQQWSIPPFPVS 389
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 390 GHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433
>gi|268319581|ref|YP_003293237.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Lactobacillus
johnsonii FI9785]
gi|262397956|emb|CAX66970.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Lactobacillus
johnsonii FI9785]
Length = 398
Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats.
Identities = 85/397 (21%), Positives = 162/397 (40%), Gaps = 16/397 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF K I T
Sbjct: 12 AALPVLKEINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFK----KTIDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D
Sbjct: 68 GIKHGTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMDV 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A
Sbjct: 128 DGNIIDHFDGLGDLEKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETEQAIS 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L +S ERI E K+ A A ++ E + + +
Sbjct: 187 DNHELLSKISVERIRDEFVKMGIAPGSQKAFQ-IFLDTGLSEEVPGFK--GKKENLALYP 243
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+L ++++ I + + + + + +
Sbjct: 244 QLNFSPTNEANLWALMIILLKLPNDKIPHFMRMWKNSNAMERQVADIVAFFDLISSHAPN 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y G + +++ + + L + ++ + + G ++
Sbjct: 304 NY--DLYKAGLETIVSTIDLAHIL----GQPVNGSALVDSYEALPIKNNRDLVIDGHFLL 357
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K G+P G +VG +L K+ + ++ + +
Sbjct: 358 KNGVPAGPRVGLLLEEIKKAVLEGVISNNKAAITEFI 394
>gi|155030240|ref|NP_886552.2| CCA tRNA nucleotidyltransferase 1, mitochondrial [Homo sapiens]
gi|16416451|dbj|BAB70662.1| tRNA-nucleotidyltransferase [Homo sapiens]
gi|119584290|gb|EAW63886.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_b [Homo
sapiens]
gi|119584293|gb|EAW63889.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_b [Homo
sapiens]
gi|158261845|dbj|BAF83100.1| unnamed protein product [Homo sapiens]
gi|168278132|dbj|BAG11044.1| tRNA-nucleotidyltransferase 1 [synthetic construct]
gi|190690285|gb|ACE86917.1| tRNA nucleotidyl transferase, CCA-adding, 1 protein [synthetic
construct]
gi|190691659|gb|ACE87604.1| tRNA nucleotidyl transferase, CCA-adding, 1 protein [synthetic
construct]
Length = 434
Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats.
Identities = 118/404 (29%), Positives = 199/404 (49%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QDID ATT P ++ +F +
Sbjct: 40 LFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 160 LGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPET 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + +N ++H+ SL++
Sbjct: 220 LEAIAENAKGLAGISGERIWVELKKILVGNH-VNHLIHLIYDLDVAPYIGLPANASLEEF 278
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+V + F K +LL + + + + + + +E + + +
Sbjct: 279 DKVSKNVDGFSPKPVTLLASLFKVQDD----VTKLDLRLKIAKEEKNLGLFIVKN--RKD 332
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + Y D ++ ++ L +Q + L ++ W P FP++
Sbjct: 333 LIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCL---LKEMQQWSIPPFPVS 389
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 390 GHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433
>gi|291518259|emb|CBK73480.1| uncharacterized domain HDIG [Butyrivibrio fibrisolvens 16/4]
Length = 442
Score = 206 bits (523), Expect = 7e-51, Method: Composition-based stats.
Identities = 99/441 (22%), Positives = 183/441 (41%), Gaps = 48/441 (10%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
D+ I+++L ++ VGG VRD ++ + D DI T+ LP+ V +F + T
Sbjct: 6 DVSKIINILESNGHEAYAVGGCVRDCILGKNPHDWDITTSALPETVKSLFD----RTFDT 61
Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ +++TT R D DGR+ K FT + D RRDFTINA+ ++
Sbjct: 62 GIEHGTVTVLMHGVGYEVTTYRVDGKYEDGRHPKEVTFTASLEEDLKRRDFTINAMAYNE 121
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
++D GG DL+ IK +G+ R ED LR+LR RF A G I+ A
Sbjct: 122 SKGLVDLFGGEADLQAGIIKAVGNPTERFTEDALRMLRALRFSAQLGF-EIEPATYQAIK 180
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L+ +S+ERI E+ KL+ + +P I +Y G+ K F + +
Sbjct: 181 ELAPTLERISAERIQVEMVKLVTSPHPER-IRDVYETGLTKIFFPEFDTMMECDQVNKHH 239
Query: 252 AEQVFEWKI--------DSLLRFIVLISW----------------------QDKKSILSM 281
V E I D +LR +++ + +
Sbjct: 240 MYTVGEHTIVAMGLIPEDKVLRLAMMLHDVAKPVCKTTDENGQNHFKMHPVKGADLAREI 299
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
++ + + + + ++ +S ++++ G + L + A
Sbjct: 300 LRRLKFDNDTVAKVCNLVKNHDDRPEISQRNVRRMIIRVGQENFDDLLAVKRADTLAQSM 359
Query: 342 HQDTCF------ILQVLSDI----IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
+ + +V ++I + + G D++ G+P G+++G IL E
Sbjct: 360 YHREEKLAYIDELQRVYNEIVAAGDCLRIKDLKINGKDLIAMGVPQGQQIGAILNAIFDE 419
Query: 392 WINSSFQLSQEDLHHLLRKLI 412
+ + +E L + R ++
Sbjct: 420 VVENPSLNDRETLLNKARSMV 440
>gi|225573952|ref|ZP_03782597.1| hypothetical protein RUMHYD_02046 [Blautia hydrogenotrophica DSM
10507]
gi|225038790|gb|EEG49036.1| hypothetical protein RUMHYD_02046 [Blautia hydrogenotrophica DSM
10507]
Length = 447
Score = 206 bits (523), Expect = 7e-51, Method: Composition-based stats.
Identities = 89/444 (20%), Positives = 171/444 (38%), Gaps = 48/444 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL +L+ ++ +VGG VRDS++ + D DI T+ P+ V ++F + +
Sbjct: 7 PKVSEILDILHSHGYEAYVVGGCVRDSILARTPDDWDITTSAKPEEVKKLFR----RTVD 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++ +++TT R D + R+ K FT + D RRDFTINA+ +
Sbjct: 63 TGLQHGTVTVLLGNDGYEVTTYRLDGEYEDSRHPKEVTFTSSLEEDLKRRDFTINAMAYN 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
Q+ ++D GG+ DL+ + I+ +G+ R ED LRI+R RF A G + +
Sbjct: 123 QEEGLVDLFGGMRDLQGKVIRAVGEPKERFTEDALRIMRAVRFSAQLGFTIDEKTYEALA 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ I + + L + + GI + I + + +
Sbjct: 183 ELSPNLKHISAERIQVELVKILTSKHP--EYLEAAWETGITRVILPEFDAMMETAQNTPH 240
Query: 251 EAEQVFEWKI--------DSLLRFIVLISWQDKK----------------------SILS 280
V + D +LR +L+ K
Sbjct: 241 HCYDVGRHALVSLMAVPADKVLRLTMLLHDVGKPVVRTTDEQGQDHFKGHEDVGERMASE 300
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ K+ + + + + + Q I++ G+ + L++ LA
Sbjct: 301 ILKRLKMDNDTISKVCRLIHWHDYQPVAVEKGIRRAVNRVGEDIFPFLLQVQLADTMAKS 360
Query: 341 THQDTCFILQ----------VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390
+ Q +L +TG D++ G+ PGK +G +L +
Sbjct: 361 DFGREKRLEQITKTQQIYEGILEANQCLSLKSLAVTGKDLIAMGMQPGKGIGQMLDFLLE 420
Query: 391 EWINSSFQLSQEDLHHLLRKLIAS 414
+ ++ +E L L ++ + S
Sbjct: 421 KVLDEPDYNKKEYLLSLAKRRLES 444
>gi|322391581|ref|ZP_08065050.1| polyA polymerase family protein [Streptococcus peroris ATCC 700780]
gi|321145664|gb|EFX41056.1| polyA polymerase family protein [Streptococcus peroris ATCC 700780]
Length = 399
Score = 206 bits (523), Expect = 7e-51, Method: Composition-based stats.
Identities = 95/398 (23%), Positives = 181/398 (45%), Gaps = 17/398 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IFS + +
Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFS----RTVDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 69 IEHGTVLVLEGEEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL N+ ++ +G A R ED LRI+R FRF A G ++++ A
Sbjct: 129 GEIVDLFDGLKDLENQILRAVGVASERFNEDALRIMRGFRFQASLGF-ELETETFKAMKV 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L + +
Sbjct: 188 LTPLLEKISIERTFVEFDKLLLAPYWRVGLSSMIESQA--YDYLPDMAGSQDKLQSLFDL 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + + K + R+ + ++ ++ +
Sbjct: 246 EDNFTFE-SSEQAWAALLWALEVEDAQQFLKHWKTSRQFAKQVQDLLTILSLREGGALSK 304
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L L + I + + K + GD ++K
Sbjct: 305 RDCY------QFNLDSLLQAENLRKAQGKEVNPQAITETYESLTFHDKKEMQINGDILIK 358
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
YG PG ++G++L + ++ + ++ +H LR
Sbjct: 359 EYGYQPGPELGDVLDEIEYAIVDGVLENDRQAIHDYLR 396
>gi|260429133|ref|ZP_05783110.1| tRNA-nucleotidyltransferase 1 [Citreicella sp. SE45]
gi|260419756|gb|EEX13009.1| tRNA-nucleotidyltransferase 1 [Citreicella sp. SE45]
Length = 382
Score = 206 bits (523), Expect = 7e-51, Method: Composition-based stats.
Identities = 124/407 (30%), Positives = 200/407 (49%), Gaps = 27/407 (6%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
++ V W ++L++L G ++ +VGG VR++LMN++V D+DIAT P+RV+
Sbjct: 1 MTQVSGDWLSCDSTQHVLAMLEAGGHEAYVVGGCVRNALMNVAVGDVDIATNARPERVVL 60
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ K +PT I +GT+ ++ ++TT R+D+ TDGR A V + D D+ RRD
Sbjct: 61 LAESAGLKAVPTGIEHGTVTVVADGVGHEVTTYRADVETDGRRAVVRYADDVAEDAARRD 120
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK- 180
FT+NALYAD +G+++D +GGL DL R ++FIGDA RI EDYLRILRFFRF A YG+
Sbjct: 121 FTMNALYADARGRMLDPLGGLPDLEARRVRFIGDAGERIREDYLRILRFFRFIAWYGDPA 180
Query: 181 -NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+D++ L GL+ LS+ER+ E+ +LL A P AI M G+ ++
Sbjct: 181 EGVDAEALAGIAANLDGLQKLSAERVGHEMVRLLRAPEPGIAICVMAQSGVLDKVLPGAS 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+++ L + EQV + + R L+ +
Sbjct: 241 ILAIQPLVAL---EQVHGVTPEPMRR-------------LAGLGYYDGASLRLSRGQQKR 284
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ S I + + +G ++ + + A + +I
Sbjct: 285 LGLYQSLLSSDEPIAETAWRHGAEIALDVAILRAASLGQPVAPFVQ-------DEIAKGA 337
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
FP+ D++ G+ G ++G L ++ WI S F LS++DL
Sbjct: 338 GATFPVKPRDLMP-GVQ-GPELGEALRRLERRWIASGFMLSRDDLLE 382
>gi|296225724|ref|XP_002758621.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial [Callithrix
jacchus]
Length = 434
Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats.
Identities = 120/404 (29%), Positives = 203/404 (50%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QD+D ATT P ++ +F +
Sbjct: 40 LFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDVDFATTATPIQMKEMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ I+F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 160 LGFDGTLFDYFNGYEDLKNKKIRFVGQAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPET 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + + I +Y+ + I L SL++
Sbjct: 220 LEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVASYIGLPANA-SLEEF 278
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+V + + F K +LL + + + + + + +E + + +
Sbjct: 279 DKVSKNVEGFSPKPMTLLASLFKVQDD----VTKLDLRLKIAKEEKNLGLFIVKN--RKD 332
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + + Y D ++ ++ L +Q + L ++ W P FP++
Sbjct: 333 LIKAADTSEPLKPYQDCIIDSREPDATTRVCELLKYQGEHCL---LKEMQQWSIPPFPVS 389
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 390 GHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433
>gi|168180739|ref|ZP_02615403.1| polyA polymerase family protein [Clostridium botulinum NCTC 2916]
gi|182668524|gb|EDT80503.1| polyA polymerase family protein [Clostridium botulinum NCTC 2916]
Length = 450
Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats.
Identities = 101/440 (22%), Positives = 182/440 (41%), Gaps = 42/440 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+++L + ++CIVGGAVRDSL+ V D DI T+ P V+ IF YK+IP
Sbjct: 12 KGVEYIINILQENGYEACIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIIP 71
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T + +GT+ I+ +++TT R + + R +V FT + K D RRD TINA+ +
Sbjct: 72 TGLKHGTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLKEDLKRRDLTINAMAYN 131
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++DY GL DL N+ I+ +G++ R ED LR+LR RF + ++
Sbjct: 132 DKIGLVDYFHGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNFH-MEESTKFNI 190
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ K + +S ER E+ K+L + P+ I ++ + I +++ + +
Sbjct: 191 RELSKNIANVSMERTRDELCKILVSSQPVYGIRNIVELNLMDYIIPELKACVGFEQHNIH 250
Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDKKSIL----------------------S 280
+ V+ LR L+ K
Sbjct: 251 HDKDVYGHILSVVENVPNKLELRLAALLHDIGKPRCFSIGDNGQGHFYGHQKISADMTKD 310
Query: 281 MAKKFSLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ K+ + Y + + L P IKK G + ++ +A +
Sbjct: 311 ILKRLKFDNKTIYKVDKLVYNHMTRYNKLRTPNIKKFINKVGIDNLDDLFELQVADIKGS 370
Query: 340 LTHQD--------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
++LS+ + G D++K GI G+++G +L
Sbjct: 371 AKEYHSFDNVLNLKIKCEKILSEKQPLTIKDLDINGYDLMKLGINQGREIGIMLNKLLDI 430
Query: 392 WINSSFQLSQEDLHHLLRKL 411
+ + ++EDL ++ +
Sbjct: 431 ILENPNLNNKEDLIKIVESI 450
>gi|291521782|emb|CBK80075.1| tRNA nucleotidyltransferase/poly(A) polymerase [Coprococcus catus
GD/7]
Length = 470
Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats.
Identities = 92/442 (20%), Positives = 168/442 (38%), Gaps = 48/442 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL L++ ++ +VGG VRDSL+ +D DI T+ P++V +F+ I
Sbjct: 21 ENAAVILKGLSEAGYEAYVVGGCVRDSLLGREPKDWDITTSARPEQVKAVFAH----TID 76
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ K+ +++TT R D + R+ K FT D RRDFTINA+ +
Sbjct: 77 TGIEHGTVTVMIGKEGYEVTTYRIDGEYEDSRHPKEVQFTSQLLEDLKRRDFTINAMAYN 136
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++D G+ DL + I+ +G R ED LRI+R RF A G +
Sbjct: 137 PDRGIVDAFDGIGDLERKIIRCVGVPQERFDEDALRIMRAVRFSAQLGFEIDGPTKEAIK 196
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K ++ I + + L+ + + GI + + I
Sbjct: 197 EKVQQLENISAERIQMELVKILVSDHP--EYMRLACDLGITAVVLPEYDRIRGVSQHTPN 254
Query: 251 EAEQVFEWK--------IDSLLRFIVLISWQDKKSI----------------------LS 280
V E D +LR +L+ K +
Sbjct: 255 HIYDVEEHTLRAMMNIVPDKVLRLTMLMHDFGKPDVKKVVEGGREIFYKHPEVSAAYAEK 314
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN- 339
+ ++ + R ++ + + S +++ G + +K+ A
Sbjct: 315 IMRRLKFDNDTRTKVVRLVKWHGLKYDASEVSVRRALNRVGQDIFEDFIKVQHADIEAKN 374
Query: 340 ---------LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390
L + +V+++ + + G D+++ GI PG +G +L +
Sbjct: 375 PAVIPGKLALLAEKEKTYHKVIAEGQCFTVRQLAIGGLDLIRAGIEPGPLLGAVLDKLTE 434
Query: 391 EWINSSFQLSQEDLHHLLRKLI 412
I+ ++E L L KL
Sbjct: 435 AVIDDQRMNNKEKLLELAEKLK 456
>gi|42519026|ref|NP_964956.1| tRNA CCA-pyrophosphorylase [Lactobacillus johnsonii NCC 533]
gi|73619783|sp|Q74JK7|CCA_LACJO RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|41583313|gb|AAS08922.1| poly(A) polymerase [Lactobacillus johnsonii NCC 533]
Length = 398
Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats.
Identities = 86/397 (21%), Positives = 162/397 (40%), Gaps = 16/397 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF K I T
Sbjct: 12 AALPVLKEINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFK----KTIDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D
Sbjct: 68 GIKHGTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMDV 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A
Sbjct: 128 DGNIIDHFDGLGDLEKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETEQAIS 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L +S ERI E K+ A A ++ E + + +
Sbjct: 187 DNHELLSKISVERIRDEFVKMGIAPGSQKAFQ-IFLDTGLSEEVPGFR--GKKENLALYP 243
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+L ++++ I + + + + + +
Sbjct: 244 QLNFSPTTEANLWALMIILLKLPNDKIPHFMRMWKNSNAMERQVADIVAFFDLISSHAPN 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y G + +++ + + L + ++ + + G ++
Sbjct: 304 NY--DLYKAGLETIVSTIDLAHIL----GQPVNGSALVDSYEALPIKNNRDLVIDGHFLL 357
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K GIP G +VG +L K+ + ++ + +
Sbjct: 358 KNGIPAGPRVGLLLEEIKKAVLEGVISNNEAAITEFI 394
>gi|226949676|ref|YP_002804767.1| polyA polymerase family protein [Clostridium botulinum A2 str.
Kyoto]
gi|226844372|gb|ACO87038.1| polyA polymerase family protein [Clostridium botulinum A2 str.
Kyoto]
Length = 450
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 100/440 (22%), Positives = 182/440 (41%), Gaps = 42/440 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+++L + ++CIVGGAVRDSL+ V D DI T+ P V+ IF YK+IP
Sbjct: 12 KGVEYIINILQENGYEACIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIIP 71
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T + +GT+ I+ +++TT R + + R +V FT + K D RRD TINA+ +
Sbjct: 72 TGLKHGTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLKEDLKRRDLTINAMAYN 131
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++DY GL DL N+ I+ +G++ R ED LR+LR RF + ++
Sbjct: 132 DKIGLVDYFHGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNFH-MEESTKFNI 190
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ K + +S ER E+ K+L + P+ I ++ + I +++ + +
Sbjct: 191 RELSKNIANVSMERTRDELCKILVSSQPVYGIRNIVELNLMDYIIPELKACVGFEQHNIH 250
Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDKKSIL----------------------S 280
+ ++ LR L+ K
Sbjct: 251 HDKDIYGHILSVVENVPNKLELRLAALLHDIGKPRCFSIGDNGQGHFYGHQKISADMTKD 310
Query: 281 MAKKFSLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ K+ + Y + + L P IKK G + ++ +A +
Sbjct: 311 ILKRLKFDNKTIYKVDKLVYNHMTRYNKLRTPNIKKFINKVGIDNLDDLFELQVADIKGS 370
Query: 340 LTHQD--------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
++LS+ + G D++K GI G+++G +L
Sbjct: 371 AKEYHSFDNVLNLKIKCEKILSEKQPLTIKDLDINGYDLMKLGINQGREIGIMLNKLLDI 430
Query: 392 WINSSFQLSQEDLHHLLRKL 411
+ + ++EDL ++ +
Sbjct: 431 ILENPNLNNKEDLIKIVESI 450
>gi|251782231|ref|YP_002996533.1| tRNA CCA-pyrophosphorylase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242390860|dbj|BAH81319.1| poly(A) polymerase/tRNA nucleotidyltransferase [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|323127083|gb|ADX24380.1| tRNA CCA-pyrophosphorylase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 402
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 107/403 (26%), Positives = 187/403 (46%), Gaps = 18/403 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF+ + +
Sbjct: 13 ALPILNKIKEAGYEAYFVGGSVRDVLLGRPIHDVDIATSSYPEETKAIFN----RTVDVG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL DL + ++ +G+A R ED LRI+R FRF A +I+S A
Sbjct: 129 GQVIDKFTGLQDLEQKRLRAVGEAADRFEEDALRIMRGFRFAASLDF-DIESATFEAMKS 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQLSQVIE 251
L +S ER + E +KLL A + I+ M + L QEI+L QL+ +
Sbjct: 188 HSLLLAKISVERSFIEFDKLLMAPHWRKGILAMIACQAYDYLPGLGQQEIALKQLTVSLA 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ F + I+ +S Q+ K L K + + L++ ++ + +
Sbjct: 248 DDFTFSDHHQAWAYLIISLSIQNPKPFLKAWKTSNDFQRCVAQLVTLYHIRQERPFEKL- 306
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y YG K ++ +L D +I Q+ + K + G ++
Sbjct: 307 ----DIYQYGKK----LARLIESLRQAMGQDVDMAYIEQLDQALAIHDKHDIVVNGSHLI 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
K +G+ PG ++G IL + + + + +R+ +A
Sbjct: 359 KNFGLKPGPELGVILERIELAIVEGHLANELDAIEAFVREELA 401
>gi|332231563|ref|XP_003264964.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial
[Nomascus leucogenys]
Length = 434
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 117/404 (28%), Positives = 200/404 (49%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QD+D ATT P ++ +F +
Sbjct: 40 LFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDVDFATTATPSQMKEMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 160 LGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPET 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + +N ++H+ SL++
Sbjct: 220 LEAIAENAKGLAGISGERIWVELKKILVGNH-VNHLIHLIYDLDVAPYIGLPANASLEEF 278
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+V + + F K +LL + + + + + + +E + + +
Sbjct: 279 DKVSKNVEGFSPKPMTLLASLFKVQDD----VTKLDLRLKIAKEEKNLGLFIVKN--RKD 332
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + Y D ++ ++ L +Q + L ++ W P FP++
Sbjct: 333 LIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCL---LKEMQQWSIPPFPVS 389
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 390 GHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433
>gi|116333429|ref|YP_794956.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus
brevis ATCC 367]
gi|122269884|sp|Q03S97|CCA_LACBA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|116098776|gb|ABJ63925.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus
brevis ATCC 367]
Length = 397
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 84/396 (21%), Positives = 160/396 (40%), Gaps = 15/396 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+L + + ++ VGG+VRD+++ + D+DIAT+ PD + +F + + T
Sbjct: 13 ARPVLQTIEQAGYEAYFVGGSVRDTILGKEIHDVDIATSAYPDEIKHLFK----RTVDTG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ I+ ++ TT RS+ R +V F R D RRDFTINAL +
Sbjct: 69 IEHGTVMILDHGTGYETTTFRSESTYTDFRRPDQVTFVRSLAEDLKRRDFTINALAMKED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G VID GL DL++R I+ +GD R ED LR++R RF + + +
Sbjct: 129 GTVIDLFDGLADLKHRQIRAVGDPQERFHEDALRMMRAVRFASQLNFTIVPETLAAMTSH 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
A+ KI + L + G ++ L++L+ +
Sbjct: 189 AELLRKIAVERTQVELLKLLTGQAPQQGLTDLLTTGLWQYCPDFADHKVDLERLTAQLHQ 248
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ +LL + +I + K + + + + S+
Sbjct: 249 GASTDLTAWTLLTTSF---GLETNAITTFLKHWKTANQTISAVQMTTKMAQHLLQGSLST 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G+ ++ + + L + + + ++ ++ K +TG D+++
Sbjct: 306 W--QVYQCGEDQLMIANEAAVVLGATDRSRE----LVAQWQNLPIQTKKALAVTGRDLMQ 359
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G+ PG ++G IL + + + + L +
Sbjct: 360 AGVQPGPQLGAILGDLEYQVVTGKLPNEKPALVAAV 395
>gi|329667440|gb|AEB93388.1| poly(A) polymerase [Lactobacillus johnsonii DPC 6026]
Length = 398
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 86/397 (21%), Positives = 162/397 (40%), Gaps = 16/397 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF K I T
Sbjct: 12 AALPVLKEINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFK----KTIDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D
Sbjct: 68 GIKHGTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMDV 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A
Sbjct: 128 DGNIIDHFDGLGDLEKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETEQAIS 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L +S ERI E K+ A A ++ E + + +
Sbjct: 187 DNHELLSKISVERIRDEFVKMGIAPGSQKAFQ-IFLDTGLSEEVPGFR--GKKENLALYP 243
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+L ++++ I + + + + + +
Sbjct: 244 QLNFSPTNEANLWALMIILLKLPNDKIPHFMRMWKNSNAMERQVADIVAFFDLISSHAPN 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y G + +++ + + L + ++ + + G ++
Sbjct: 304 NY--DLYKAGLETIVSTIDLAHIL----GQPINGSALVDSYEALPIKNNRDLVIDGHFLL 357
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K GIP G +VG +L K+ + ++ + +
Sbjct: 358 KNGIPAGPRVGLLLEEIKKAVLEGVISNNEAAITEFI 394
>gi|302384827|ref|YP_003820649.1| Polynucleotide adenylyltransferase region [Clostridium
saccharolyticum WM1]
gi|302195455|gb|ADL03026.1| Polynucleotide adenylyltransferase region [Clostridium
saccharolyticum WM1]
Length = 406
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 104/407 (25%), Positives = 181/407 (44%), Gaps = 15/407 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I+ LN ++ +VGG VRDSL+ +D DI T+ P++V IF + +
Sbjct: 8 DAAKRIIEQLNTNGFEAYVVGGCVRDSLLGRMPEDWDITTSAKPEQVKEIFK----RTVD 63
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + +++TT R D DGR+ K V FT D RRDFTINA+
Sbjct: 64 TGIQHGTVTVLIDHEGYEVTTYRIDGEYEDGRHPKSVEFTGSLLEDLKRRDFTINAMAYS 123
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D GG DL RTI+ +G++ R ED LRILR RF A ++ D A
Sbjct: 124 DREGLVDAFGGEMDLERRTIRCVGNSLDRFTEDALRILRAIRFSAQLDF-TLEEDTRAAI 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ +S ERI E+ KLL + +P I +Y+ GI I +E ++
Sbjct: 183 SLMAPNMGKVSKERIQVELTKLLLSGHPER-IKAVYDNGIAPYISPHFKEAG----RRLK 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
E E++ + +R+ + ++ + + + K+ L + + + + +
Sbjct: 238 ETEKIGNLPLKKHMRWSGFLRQEEPQDAVRILKELKLDNDTIHQTKTLVSFWKMEIPADK 297
Query: 311 PEIKKLFYLYGDKVMIAKL---KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
P I+ + ++ L K+F Y F ++L + +TG
Sbjct: 298 PAIRHVMSGLSQELFEDLLCFQKVFCPNPYQAQLTVVEQFSEEILRAGDCIRLKDMAVTG 357
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+++ G+ PG ++G +L Q +N ++E L +
Sbjct: 358 RELMDAGMKPGPEMGAVLNRLFQIVLNRPECNNREYLMKSAEHFLEE 404
>gi|163737967|ref|ZP_02145383.1| Polynucleotide adenylyltransferase region [Phaeobacter
gallaeciensis BS107]
gi|161388583|gb|EDQ12936.1| Polynucleotide adenylyltransferase region [Phaeobacter
gallaeciensis BS107]
Length = 384
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 126/410 (30%), Positives = 192/410 (46%), Gaps = 30/410 (7%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
++ V+ KW D + ++ +L KG + VGG VR++L+ + V D+D++T + P RVM
Sbjct: 1 MTRVKAKWLEDPAVQHVCEVLTKGGAEVYFVGGCVRNALLGVPVSDLDLSTNVAPQRVMA 60
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ + K IPT I +GT+ ++ R ++ITT R D+ TDGR A V F + D+ RRD
Sbjct: 61 LAEEAGIKAIPTGIDHGTVTLVYRGTPYEITTFRRDVATDGRRAVVAFADRIEEDAARRD 120
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FT+NALYA G ++D + GL DL R ++FIG A RI EDYLR LR+FRF A YG +
Sbjct: 121 FTMNALYARPDGVLVDPLNGLPDLHARAVRFIGSAAQRIREDYLRSLRYFRFHAWYGNSD 180
Query: 182 --IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
D D L A + G+ LS ER+ SE+ KLL A +P AI M G+ I
Sbjct: 181 AGFDPDALSAIAENLDGIGRLSRERVGSEVLKLLAAPDPAPAIAVMRQVGLLSLILPGSD 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ +L L + + D L R L ++ L + +
Sbjct: 241 DRALGPLIHL-----EGDISADPLCRLAALGGDAPWEA-------LRLSKSQAADVRLLR 288
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ Y +G + + AL + V ++I
Sbjct: 289 AGAEGTDGPATLA-----YHHGVSTARNVMLLRSALFEAPIAP-------DVETEITKGA 336
Query: 360 KPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+FPL+ D++ G +G L +++WI S F L ++ L L
Sbjct: 337 AAVFPLSAKDLMPDL---QGPALGAALKTLQKDWIRSGFMLDRDALLKRL 383
>gi|182679758|ref|YP_001833904.1| polynucleotide adenylyltransferase region [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182635641|gb|ACB96415.1| Polynucleotide adenylyltransferase region [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 417
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 132/407 (32%), Positives = 199/407 (48%), Gaps = 5/407 (1%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I ++ N +++ IVGG+VR++L V + D ATT LP+ + K
Sbjct: 15 LAHKGVERIFAIFNGAGEETRIVGGSVRNALAGQHVHEFDFATTALPEIIQARAEAAGLK 74
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
IPT I +GTI I+ + F+ITTLR D+ TDGR A V F RD++ D+ RRDFTINAL
Sbjct: 75 YIPTGIEHGTITILAGGESFEITTLRKDVETDGRRAIVRFGRDFEEDAHRRDFTINALSM 134
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
DQ G + DY GGL DL ++FIG A RI EDYLRILR FRF A + +D++GL A
Sbjct: 135 DQHGTLYDYTGGLADLAAGRVRFIGAARQRIREDYLRILRLFRFSADFAGGRLDAEGLDA 194
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+I+ ++GL+ LS+ERI +E+ KL+ K + G+F + V + S +L++
Sbjct: 195 AIREREGLRRLSTERIRAELLKLMGGKRVAEVAYEIAEAGLFTPLLPLVPQPS--RLNRF 252
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
I E E D LLR + + ++++ ++ SL L + L+
Sbjct: 253 ITIET--EATQDPLLR-LAALFTMVRENVTALRVHLSLSNAETTRLDHAVTLASSLHALA 309
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
P + L L + + KP P +G D
Sbjct: 310 EPPSEPAMRALLLHRSHQTLDDAFVLTQAGAPAALGAAWASARARLRTLPKPKLPFSGAD 369
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
++ GI PG +G L ++ WI + F E L LL ++ + +
Sbjct: 370 LIARGISPGPGMGEALQRLEKAWIAAGFPEDSESLAALLDRIAPARR 416
>gi|300812579|ref|ZP_07092996.1| putative tRNA adenylyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496452|gb|EFK31557.1| putative tRNA adenylyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 396
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 95/397 (23%), Positives = 160/397 (40%), Gaps = 16/397 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L L + ++ VGG VRD L+ + D+DIAT+ P+ V F+K+ I T
Sbjct: 12 QAMPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKETFAKS----IDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ITT R++ R KV F ++ D RRDFTINAL ++
Sbjct: 68 GIQHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTINALAMNR 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
QG++ID GL DL+ R IK +G A R ED LR++R RF + +++ A I
Sbjct: 128 QGEIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQLSF-SLEEKTRQAII 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L +S ERI E KL KN A + E + V
Sbjct: 187 DNHELLSKISVERIREEFVKLALGKNSRQAFKD-FLATGLSEECPGL--AGKKDQLSVFT 243
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ I ++ I + + + +
Sbjct: 244 DLKAGPDDEAVFWSLIAVLINLPADKISPFMRAWKNSNAMNQQVRQIVAAFDLLSRGEES 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + G + + A LK+ L + +L + + + G ++
Sbjct: 304 DF--DLFEIGQENLEAALKLAGLL----GQPLSSQILLDRYNRLPIKAAGELAIDGQWLI 357
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K GI P ++G +L + ++ + SQ + L
Sbjct: 358 KQGIKPSPELGQLLRKALEGVVSGQVENSQAAIAEFL 394
>gi|312866731|ref|ZP_07726945.1| tRNA adenylyltransferase [Streptococcus parasanguinis F0405]
gi|311097812|gb|EFQ56042.1| tRNA adenylyltransferase [Streptococcus parasanguinis F0405]
Length = 398
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 90/406 (22%), Positives = 187/406 (46%), Gaps = 17/406 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + IL + ++ VGG+VRD+L++ + D+DIA++ P+ IF + +
Sbjct: 7 EALPILEKIKAAGFEAYFVGGSVRDALLDRPIHDVDIASSSYPEETKAIFD----RTVDV 62
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++ITT R++ + R + V F R + D RRDFT+NA ++
Sbjct: 63 GIEHGTVLVLENGQEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNE 122
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+G+++D GL DL N+ ++ +G H R ED LRI+R FRF A G ++ A
Sbjct: 123 KGEIVDLFHGLEDLENKVLRAVGLPHERFNEDALRIMRGFRFQASLGF-ELEEATFDAMK 181
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L+ +S ER + E +KLL + + M G + + ++++ + + ++ +
Sbjct: 182 ECAPLLEKISVERTFIEFDKLLLSPFWRQGLEAMLASGAYHYL-PEMKDRK-EAIERLFD 239
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E + + + L+ + + I KK+ R+ + ++ S+
Sbjct: 240 IELEYTFSTSE-QAWAALVLALEIQDIPKFFKKWKTSRDFAKTVEQIVEILKLRENGSL- 297
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y Y ++++ ++ A + D I +V + K + G ++
Sbjct: 298 -DTRACYKYEKRLLLVAEELREAYALS----VDYLAIERVYDSLTIHDKHEVVVNGGILI 352
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
K YG PG +G +L + ++ +E + ++++ +
Sbjct: 353 KEYGFQPGPALGEMLTKIEYAIVDGELANEKEAIIAYIQQVKEEEK 398
>gi|149185903|ref|ZP_01864218.1| tRNA nucleotidyltransferase [Erythrobacter sp. SD-21]
gi|148830464|gb|EDL48900.1| tRNA nucleotidyltransferase [Erythrobacter sp. SD-21]
Length = 391
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 123/416 (29%), Positives = 199/416 (47%), Gaps = 27/416 (6%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M ++ W DL +++ L + VGGAVRD+L+ ++ D+D+AT +LP V+
Sbjct: 1 MATLPNADWTKREDLAQLIAALGADN--ARYVGGAVRDTLLGKAIHDVDLATPLLPHEVI 58
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ + +PT I +GT+ I + +ITTLR D+ +DGR A V F ++WK D+ RR
Sbjct: 59 DRCREAGIRTVPTGIDHGTVTAILPEGPVEITTLRRDVSSDGRRATVAFAQEWKDDASRR 118
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALYA ++ D+ GG+ DL ++FIG+A RI ED+LRILR+FRF A +G+
Sbjct: 119 DFTINALYAHPGSLEIEDFFGGVADLERGHVRFIGEAEERIREDHLRILRYFRFQARFGD 178
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ A K LS ER+ E+ +L P I M G+ + I + +
Sbjct: 179 ALDEEAVNACRDLAHTL-KGLSRERVAMELLAILALPAPSPTIGLMKELGVLEVILPEAR 237
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ L+Q++EAE D++ R L+ S+A + L R+ R L+
Sbjct: 238 DRETQCLAQLVEAEAREGVDGDAVRRLAALLPPIKSV-AESVAARLRLSRQQRARLVCAA 296
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
++ + L Y G + +L + + ++ + W+
Sbjct: 297 E----RREEDAAAPRALAYFEGVEGARDRLLLKG----------------ESVAALRDWE 336
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR-KLIAS 414
P PL G ++V G+ G +V L + W+ F + + LL +L AS
Sbjct: 337 VPQLPLKGGEIVARGVGAGPEVARTLRAVEARWVEEGFP-DRSRVLELLEHELAAS 391
>gi|297670810|ref|XP_002813548.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like
isoform 1 [Pongo abelii]
gi|297670812|ref|XP_002813549.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like
isoform 2 [Pongo abelii]
Length = 434
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 118/404 (29%), Positives = 200/404 (49%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QDID ATT P ++ +F +
Sbjct: 40 LFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 160 LGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPET 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + +N ++H+ SL++
Sbjct: 220 LEAIAENAKGLAGISGERIWVELKKILVGNH-VNHLIHLIYDLDVAPYIGLPANASLEEF 278
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+V + + F K +LL + + + + + + +E + + +
Sbjct: 279 DKVSKNVEGFSPKPMTLLASLFKVQDD----VTKLDLRLKIAKEEKNLGLFIVKNKKDLI 334
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + Y D ++ ++ L +Q + L ++ W P FP++
Sbjct: 335 KATDSS--EPLKPYQDFIIDSREPDAPTRVCELLKYQGEHCL---LKEMQQWSIPPFPVS 389
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 390 GHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433
>gi|104774167|ref|YP_619147.1| tRNA CCA-pyrophosphorylase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|122397131|sp|Q1G9U3|CCA_LACDA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|103423248|emb|CAI98081.1| tRNA nucleotidyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 396
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 97/397 (24%), Positives = 167/397 (42%), Gaps = 16/397 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L L + ++ VGG VRD L+ + D+DIAT+ P+ V F+K+ I T
Sbjct: 12 QAMPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKETFAKS----IDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ITT R++ R KV F ++ D RRDFTINAL ++
Sbjct: 68 GIQHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTINALAMNR 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
QG++ID GL DL+ R IK +G A R ED LR++R RF + +++ A I
Sbjct: 128 QGEIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQLSF-SLEEKTRQAII 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L +S ERI E KL K+ A + E + DQLS + +
Sbjct: 187 NNHELLSKISVERIREEFVKLALGKDSRQAFKD-FLATGLSEECPGL-AGKKDQLSVLTD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ + + I ++ I + + + +
Sbjct: 245 LKAGPDDEAVFW-SLIAVLINLPADKISPFMRAWKNSNAMNQQVRQIVAAFDLLSRGEES 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + G + + A LK+ L + +L + + + G ++
Sbjct: 304 DF--DLFEIGQENLEAALKLAGLL----GKPLSSQVLLDRYNRLPIKAAGELAIDGQWLI 357
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K GI P ++G +L + ++ + SQ + L
Sbjct: 358 KEGIKPSPELGQLLRKALEGVVSGQVENSQAAIAEFL 394
>gi|323339898|ref|ZP_08080167.1| poly A polymerase [Lactobacillus ruminis ATCC 25644]
gi|323092771|gb|EFZ35374.1| poly A polymerase [Lactobacillus ruminis ATCC 25644]
Length = 400
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 105/400 (26%), Positives = 177/400 (44%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
D I+ + + ++ VGG+VRD+L+ L + D+DIAT+ P + +IF K + T
Sbjct: 12 DAKPIIETIKQAGFEAYFVGGSVRDTLLGLPIHDVDIATSAYPREIKKIFK----KTVDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++ITT R++ R V F R + D RRD TINA D+
Sbjct: 68 GIQHGTVMVLDHGEGYEITTFRTESTYQDFRRPDHVTFVRSLEEDLKRRDLTINAFAMDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL+DL+N+ +K +GDAH R ED LR++R RF + I+ A
Sbjct: 128 TGRVIDMFDGLSDLQNKRLKAVGDAHERFHEDALRMMRTIRFASQLDF-KIEEKTFQALG 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L+ ++ ERI E KLL KNP + Y +++ + + +
Sbjct: 187 ENAALLEKIAVERIHVEWIKLLMGKNPGCGLSAFYETKLYQHCPMFSKYGETFNELSKRK 246
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E E + +LL + + + +D +L + E + +
Sbjct: 247 LEIQDEIEAWTLLSYCLKMDGKDSAKLLR---AWKSSNETIAQTEKAVAALESIADRRVT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y G+ LK LA+ D ++ + K G D++
Sbjct: 304 RF--TLYNAGETG----LKTALAVAKQMEITVDEDKLIHDYRTLPIKSKKDLKANGGDLI 357
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
K GI PG K+G IL + ++E + + + L L ++
Sbjct: 358 KEAGIKPGPKMGEILDYLEEEVLFGRVENEKTSLLELAKQ 397
>gi|255972800|ref|ZP_05423386.1| poly A polymerase [Enterococcus faecalis T1]
gi|256762486|ref|ZP_05503066.1| poly A polymerase [Enterococcus faecalis T3]
gi|255963818|gb|EET96294.1| poly A polymerase [Enterococcus faecalis T1]
gi|256683737|gb|EEU23432.1| poly A polymerase [Enterococcus faecalis T3]
Length = 404
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 93/413 (22%), Positives = 171/413 (41%), Gaps = 20/413 (4%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M +I + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ +
Sbjct: 1 MTTIPNEF----KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIK 56
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSL 118
+IF + + I +GT+ ++ + +++TT R++ R +V F R K D
Sbjct: 57 QIFK----RTVDVGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLK 112
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDFTINAL D G++ID G+ DL N+TI+ +G+ H R ED LR++R RF +
Sbjct: 113 RRDFTINALALDSTGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLD 172
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
K + + KI + LL + L
Sbjct: 173 FKIEEKTLAAIAEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPKLRE 232
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
Q L +L + + E + +LL + + + I S K + L ++ +
Sbjct: 233 QGAGLFRLMDLPARQIETEAEAWTLLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQL 289
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ LS + Y G++ + ++ +++ +
Sbjct: 290 VRG--LRFRLSNDWQPMMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIH 343
Query: 359 KKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++ +TG D++ PGK +G ++ +Q + S + QE L +K
Sbjct: 344 QRHELAITGKDLLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 396
>gi|195452400|ref|XP_002073337.1| GK14077 [Drosophila willistoni]
gi|194169422|gb|EDW84323.1| GK14077 [Drosophila willistoni]
Length = 477
Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats.
Identities = 124/411 (30%), Positives = 199/411 (48%), Gaps = 18/411 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L ++SL K + I GGAVRD LM++ +DID+ATT PD++ +F+K +
Sbjct: 72 IFTPELEQLVSLFKKYNFELRIAGGAVRDILMSIKPKDIDLATTATPDQMKEMFTKEDVR 131
Query: 70 VIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI K+ F++TTLR D+ TDGR+A VVFT DW+ D+ RRD TIN++
Sbjct: 132 MINAKGEKHGTITPRINNKENFEVTTLRIDVRTDGRHADVVFTTDWQLDANRRDLTINSM 191
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSD 185
+ G V DY G DL+ R I+F+GDA+ RI EDYLR+LR+FRF+ + D++
Sbjct: 192 FLGFDGTVYDYFYGYEDLQERRIRFVGDANIRIKEDYLRVLRYFRFYGRIANDANSHDTE 251
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L+A GL +S ERIWSE+ K++ ++ M + + L L +
Sbjct: 252 TLLAVKDNAAGLGRISGERIWSELQKIVVGNYGRELLLEMNRCQLLEYCGLP-SHPELQE 310
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
++ + FE +L L+ + L K S ++ F
Sbjct: 311 FERLCGDLEQFEPPNHPILYMTGLLHTVEDAMKLHERLKLSAYERD----LALFITQQRD 366
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ + + + + + L Y+N L++ + W P FP+
Sbjct: 367 RVDKEYSCLRDYQKLCLQPYAKRDYVEQLLKYSNK--------LELHRQLKSWATPSFPI 418
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G+ + G+ G+K+G L + W +S F+L+ E L L ++I Q
Sbjct: 419 NGNTLKGSGLV-GQKLGLALTQLRLLWADSDFKLTSEQLMEKLPEIIDQLQ 468
>gi|156397420|ref|XP_001637889.1| predicted protein [Nematostella vectensis]
gi|156225005|gb|EDO45826.1| predicted protein [Nematostella vectensis]
Length = 414
Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats.
Identities = 125/402 (31%), Positives = 197/402 (49%), Gaps = 12/402 (2%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
H +L+ + S+ K + IVGGAVRD LM +DID+ T P++++++F +
Sbjct: 16 IHTPELLRLSSVFTKHGYELRIVGGAVRDLLMGKLPKDIDLCTNATPEQMIKMFKDEEIR 75
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I T + +GT+ K F++TTLR D+ TDGR+AKV FT DW+ D+ RRD T NA+
Sbjct: 76 CIETGLQHGTLTAHINKTDFEVTTLRIDVETDGRHAKVKFTNDWQLDAERRDLTFNAMSV 135
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDGL 187
D G + DY G DLR ++F+GDA RI EDYLRILR+FRF+ N D D L
Sbjct: 136 DLTGNLYDYFNGEIDLRKGHVRFVGDARLRIKEDYLRILRYFRFYGKIATEPDNHDPDTL 195
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-LDQL 246
+ +GL+I+S ERIW E++K+L + + + +Y+ GI I L + S + +
Sbjct: 196 AVIKELAEGLRIISVERIWLEVSKILIGNHAQHLLQMLYDLGIASNIGLPTYDASCMTEF 255
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + Q+F + +LL +V + +A+ + L R ++
Sbjct: 256 HRAWKESQIFSLQPVTLLCCLVNTA----CEAEILARHWKLSNAERNLGKFITEHRLPKE 311
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + + V+ + L + ++ I W P FP+T
Sbjct: 312 HETPLKPYQDM-----LVVSPSAQSKETLRGHITELLHYQGRHELGEAIACWIIPSFPVT 366
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
GD + G+ PG + G L KQ W S + ++EDL
Sbjct: 367 GDHLKSIGLKPGPEFGRTLSQLKQMWRESYYVATKEDLLEKA 408
>gi|88608101|ref|YP_506524.1| polyA polymerase family protein [Neorickettsia sennetsu str.
Miyayama]
gi|88600270|gb|ABD45738.1| polyA polymerase family protein [Neorickettsia sennetsu str.
Miyayama]
Length = 392
Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats.
Identities = 105/405 (25%), Positives = 182/405 (44%), Gaps = 23/405 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
DL ++ ++ ++ VGG VRD L+ + DID+ATT+ P+ +R I
Sbjct: 8 TEDLRTLVQIIRNNGGEARFVGGCVRDQLLGRKISDIDLATTLKPEEAIRALKTNGLVTI 67
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
PT + +GT ++ + +ITTLR DL DGR+A V FT WK D+ RRDFT NA+Y D
Sbjct: 68 PTGLKHGTFTVLVNSRPIEITTLRQDLHCDGRHATVSFTDSWKEDAQRRDFTFNAMYIDI 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+G + DY GL DL+NR +KF+G+ H RI EDYLRILR FRF A + + + L
Sbjct: 128 EGNIHDYFSGLEDLQNRRLKFVGEPHQRIEEDYLRILRAFRFQASICKTPLSEEILH--- 184
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + +I+ L + + +F + +D++
Sbjct: 185 ---------ACTKYRKKISSLSGERIQGEMFKLLSYVNFLSTVFTMQEAKIIDEVLGAKV 235
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ +++ L++ + ++ + L R + + +
Sbjct: 236 SFSGLDYEKSRLIQDHIAALTLLIRNTENSYNLQWLYSRWRISKKVQKAISILSEEKEMH 295
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
KK G+++ + I A + + + ++ + ++P+FP+ G D++
Sbjct: 296 CPKKTLAKLGNELTRKLINILYAENKLSDIQRKDFMLVTN-----NSERPIFPVMGRDLI 350
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G G ++G L + W SS LS+ +L L+A +
Sbjct: 351 PLGYT-GPEIGKKLKQLEYLWRESSCVLSKNELL-----LMAIRK 389
>gi|289168379|ref|YP_003446648.1| tRNA nucleotidyltransferase [Streptococcus mitis B6]
gi|288907946|emb|CBJ22786.1| tRNA nucleotidyltransferase [Streptococcus mitis B6]
Length = 399
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 96/399 (24%), Positives = 178/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T
Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G A R ED LRI+R FRF A G ++S+ A
Sbjct: 129 GEIIDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ELESETFKAMKT 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A +V M +L + D+L+++
Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRRGLVSMIESQA--YDYLPDMAANQDKLNRLFNL 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ K + R+ + ++ + +
Sbjct: 246 ETDFTFE-SSEQAWAALLWALEIENAQPFLKAWKTSRQFAKQVQDLLTILALREKGELSK 304
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L L + I + + K + G ++K
Sbjct: 305 RDCYRFD------LNLLLQAENLRQAQGKEVNPQVITETYQSLTIHDKKEIQINGGILIK 358
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++ +H LR+
Sbjct: 359 EYGYQPGPDLGEILTEIEYAIVDGELENDRQAIHAYLRE 397
>gi|306824855|ref|ZP_07458199.1| polyA polymerase [Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|304433066|gb|EFM36038.1| polyA polymerase [Streptococcus sp. oral taxon 071 str. 73H25AP]
Length = 399
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 97/399 (24%), Positives = 177/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T
Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++ + VA
Sbjct: 129 GEIIDLFDGLKDLENQVLRAVGIASERFNEDALRIMRGFRFQASLGF-ELEPETFVAMKT 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S +L+++
Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRVGLSSMIESRA--YDYLPDMAGSQGKLNRLFVL 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + K K + R+ + ++ + +
Sbjct: 246 ETDFTFE-SSEQAWAALLWALEIKDAQPFLKAWKTSRQFAKQVQDLLTILVLREEGELSK 304
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L +L + I + + K + G ++K
Sbjct: 305 RDCYRFD------LDSLLQAESLRQAQGKEVNPQAITETYQSLTIHDKKEIQINGGVLIK 358
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++ +H LR+
Sbjct: 359 EYGYQPGPDLGEILTEIEFAIVDGELENDRQAIHAYLRE 397
>gi|307708357|ref|ZP_07644824.1| CCA-adding enzyme [Streptococcus mitis NCTC 12261]
gi|307615803|gb|EFN95009.1| CCA-adding enzyme [Streptococcus mitis NCTC 12261]
Length = 394
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 95/399 (23%), Positives = 177/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDDT 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G A R ED LRI+R FRF A G ++++ A
Sbjct: 124 GEIIDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ELETETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSKDKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQPFLKAWKTSRQFAKQVQDLLTILALREKGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L L + I + + K + G ++K
Sbjct: 300 RDCYRFD------LDFLLQAENLRQAQGKPVNPQVITETYQSLTIHDKKEIQINGGILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++ +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENDRQAIHAYLRE 392
>gi|254510915|ref|ZP_05122982.1| polyA polymerase family protein [Rhodobacteraceae bacterium KLH11]
gi|221534626|gb|EEE37614.1| polyA polymerase family protein [Rhodobacteraceae bacterium KLH11]
Length = 384
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 114/407 (28%), Positives = 189/407 (46%), Gaps = 26/407 (6%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
+ + W + ++ + L G ++ VGG VR++L+ V DIDIAT P V+
Sbjct: 1 MKRITEDWITANATQDVCAALTAGGAQALFVGGCVRNALLRAPVSDIDIATDARPGHVIE 60
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ K K IPT I +GT+ I+ ++TT R D+ TDGR A V F+ + D+ RRD
Sbjct: 61 LAQKAGLKPIPTGIDHGTVTIVSGGTPHEVTTFRRDVETDGRRAVVAFSDKVEEDAARRD 120
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FT+NALYA G ++D + GL DL+ R ++FIG+A RI EDYLR LR+FRF A YG+ +
Sbjct: 121 FTMNALYARPDGTILDPLDGLRDLQARRVRFIGEAEKRIREDYLRSLRYFRFHAWYGDAD 180
Query: 182 IDSDGLVASIKAKKGL--KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
D A + LS ER+ +E+ KLL A +P ++ M + G+ ++
Sbjct: 181 AGFDADALGAIAANLDGLETLSRERVGAEMLKLLAAPDPAPSVAAMRSAGVLAQLLPGAD 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ +L L ++ EQ + + R + + K++ +
Sbjct: 241 DTALAILVKL---EQDAGATPEPIRRLAAVAPVEVAKTLRLSRAQLQ------------R 285
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ ++ + +L Y YG + + + + A ++ + + H
Sbjct: 286 LTRMRDEAMATTSVAELGYRYGAEGGLHETLLRCAFLEQPWSN-------DLADALEHGA 338
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
FP+ D++ G +G L + WI S F L +E+L
Sbjct: 339 AASFPIKATDLIPAF--TGPALGAKLAELEARWIASDFALGREELLA 383
>gi|89067444|ref|ZP_01154957.1| polyA polymerase family protein [Oceanicola granulosus HTCC2516]
gi|89047013|gb|EAR53067.1| polyA polymerase family protein [Oceanicola granulosus HTCC2516]
Length = 383
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 129/407 (31%), Positives = 197/407 (48%), Gaps = 26/407 (6%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
++ ++ +W + +LL ++ VGG VR++L+ V D+D+AT P+RV+
Sbjct: 1 MTRLEAEWLTRPASRVVCNLLTDAGYQAWFVGGCVRNALIGAPVSDLDLATNAHPERVLA 60
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ K IPT I++GT+ ++ +++TT R D+ TDGR A V F + D+ RRD
Sbjct: 61 LAEAAGLKAIPTGIAHGTVTLVVEGAPYEVTTFRRDVETDGRRAVVAFADSLEEDARRRD 120
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-- 179
FT+NALYA G + D +GGL DLR R ++FIGDA RI EDYLRILRFFRF A YG+
Sbjct: 121 FTMNALYAAPDGTIADPIGGLPDLRRRQVRFIGDAEARIREDYLRILRFFRFHAWYGDAG 180
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+D+DGL A + +G+ LS ERI E+ +LL A +P A+ M G ++
Sbjct: 181 AGLDADGLAACAQHVEGVAGLSRERIGHEMLRLLAAPDPAPAVAAMEACGALAQVLPGA- 239
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
QL+ +++ E+ R + + QD + L ++ L +
Sbjct: 240 --GAGQLAVLVDLEERAGLAP-GWPRRLAALGGQDADTA------LRLSKDEAKRLRTL- 289
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ S +L Y G V + L + A+ + +D H
Sbjct: 290 ----REALGSEAGPGELGYRLGAAVALDVLALRGAMEVRPVAPEDA-------DATRHGA 338
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
K FPLT D++ G +G L + WI S F L +E L
Sbjct: 339 KQTFPLTAADLIDRH--QGPALGQALRDAEARWIASGFALGREALLA 383
>gi|291408736|ref|XP_002720670.1| PREDICTED: CG2100-like [Oryctolagus cuniculus]
Length = 431
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 118/404 (29%), Positives = 203/404 (50%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L + + I GGAVRD L + QD+D ATT P ++ ++F +
Sbjct: 35 LFTEGLKSLTELFVRENHELRIAGGAVRDLLAGVKPQDVDFATTATPAQMKQMFQAAGVR 94
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GT+ ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 95 MINNKGEKHGTVTARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 154
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ EK D +
Sbjct: 155 LGFDGTLFDYFNGYEDLKNKKVRFVGQAKQRIQEDYLRILRYFRFYGRVVEKPGEHDPET 214
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + GL +S ERIW E+ K+L ++ + + +Y+ + I L SL++
Sbjct: 215 LEAIAENAHGLAGISGERIWVELKKILTGRHVHHLVHLIYDLHVAPHIGLPASA-SLEEF 273
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++V + + F K ++L + + + + + +E + + +
Sbjct: 274 NKVTKNVEGFSPKPMTVLASLFKAQDD----VTKLDLRLKISKEEKNLGLFIVKN--RKD 327
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + + Y D V+ + A L +Q +L+ + W P FP++
Sbjct: 328 LVRAADSSESLRPYQDFVIDCREPDAAARVCELLKYQGEHGLLEQMR---GWSVPPFPVS 384
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K G+ G+++G +L + W S +Q+ +E+L +RK
Sbjct: 385 GHDLRKEGVSSGREIGALLQQLRARWKKSGYQMDKEELLSSIRK 428
>gi|322387336|ref|ZP_08060946.1| polyA polymerase family protein [Streptococcus infantis ATCC
700779]
gi|321141865|gb|EFX37360.1| polyA polymerase family protein [Streptococcus infantis ATCC
700779]
Length = 399
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 95/399 (23%), Positives = 179/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+++N + D+DIAT+ P+ +IF +T
Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDAILNRPIHDVDIATSSYPEETKQIFPRTA----DIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
GK++D GL DL N+ ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 129 GKIVDLFDGLRDLENQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ELEQETFEAMKA 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L +S ERI+ E +KLL A + M + + V S ++L + +
Sbjct: 188 LTPLLDKISVERIFVEFDKLLLAPYWRVGLSSMIESQAYDYLPDMVG--SQEKLQSLFDL 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E+ F ++ S + L+ + + K + R+ + + + ++ +
Sbjct: 246 EKDFTFE-SSEQAWAALLWVLEVEDAQQFLKHWKTSRQFAKQVQNLLSILALREEGELGN 304
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L L + I + + K + G ++K
Sbjct: 305 RDCYRFD------LDLLLQAENLRRAQGKEVNPQAITETYESLTIHDKKEMQINGGILIK 358
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG ++G++L + ++ + E +H LR+
Sbjct: 359 EYGYHPGPELGDVLEEIEYAIVDGNLDNEVEAIHAYLRE 397
>gi|254796995|ref|YP_003081832.1| poly A polymerase family protein [Neorickettsia risticii str.
Illinois]
gi|254590230|gb|ACT69592.1| poly A polymerase family protein [Neorickettsia risticii str.
Illinois]
Length = 392
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 18/394 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
DL ++ ++ ++ VGG VRD L+ + DID+ATT+ P++ +R I
Sbjct: 8 TEDLRTLVQIIRNNGGEARFVGGCVRDQLLGRKISDIDLATTLKPEKAIRALKINGLVTI 67
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
PT + +GT ++ + +ITTLR DL DGR+A V FT WK D+ RRDFT NA+Y D
Sbjct: 68 PTGLKHGTFTVLVNSRAIEITTLRQDLQCDGRHATVSFTDSWKKDAQRRDFTFNAMYMDI 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+G + DY GL DL+NR +KF+G+ H RI EDYLRILR FRF A + + + L
Sbjct: 128 EGNIYDYFSGLEDLQNRRLKFVGEPHQRIEEDYLRILRAFRFQASICKTPLSEEILH--- 184
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + +I+ L + + +F + +D++
Sbjct: 185 ---------ACTKYRKKISSLSGERIQGEMFKLLSYVNFLSTVFTMQEAKIIDEVLGAKV 235
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ +++ L++ + ++ S L R + + +
Sbjct: 236 SFSGLDYEKSRLIQDHIAALTLLIRNTESSYNLQWLYSRWRISKKVHQAISILLEEKEMH 295
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
KK G+++ +KI A + T ++ I + ++P+FP+ G D++
Sbjct: 296 CPKKTLAKLGNELTRKLIKILYAENKLTNTQHKNFMLV-----INNSERPIFPVMGRDLI 350
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
G G ++G L + W SS LS+ +L
Sbjct: 351 PLGYT-GPEIGKKLKQLEYLWRESSCALSKNELL 383
>gi|227879118|ref|ZP_03997002.1| tRNA CCA-pyrophosphorylase [Lactobacillus crispatus JV-V01]
gi|256843154|ref|ZP_05548642.1| tRNA nucleotidyltransferase [Lactobacillus crispatus 125-2-CHN]
gi|256850247|ref|ZP_05555676.1| tRNA nucleotidyltransferase [Lactobacillus crispatus MV-1A-US]
gi|262046361|ref|ZP_06019323.1| tRNA nucleotidyltransferase [Lactobacillus crispatus MV-3A-US]
gi|293380227|ref|ZP_06626308.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Lactobacillus crispatus 214-1]
gi|295692908|ref|YP_003601518.1| cca-adding enzyme [Lactobacillus crispatus ST1]
gi|227861275|gb|EEJ68910.1| tRNA CCA-pyrophosphorylase [Lactobacillus crispatus JV-V01]
gi|256614574|gb|EEU19775.1| tRNA nucleotidyltransferase [Lactobacillus crispatus 125-2-CHN]
gi|256712884|gb|EEU27876.1| tRNA nucleotidyltransferase [Lactobacillus crispatus MV-1A-US]
gi|260573232|gb|EEX29790.1| tRNA nucleotidyltransferase [Lactobacillus crispatus MV-3A-US]
gi|290923194|gb|EFE00116.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Lactobacillus crispatus 214-1]
gi|295031014|emb|CBL50493.1| CCA-adding enzyme [Lactobacillus crispatus ST1]
Length = 399
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 97/414 (23%), Positives = 177/414 (42%), Gaps = 19/414 (4%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M+ I + +L +L ++ VGG+VRD L++ V D+DI T+ P+ V
Sbjct: 1 MIKIDNLPEIFTK-AMPVLQILENAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVK 59
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSL 118
+F K+ I T I +GT+ ++ + ++ITT R++ R V F ++ D
Sbjct: 60 ELFDKS----IDTGIKHGTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLK 115
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDFTINAL D +G+++D GL+DL+N I+ +GD R ED LR++R RF +
Sbjct: 116 RRDFTINALAMDTRGQIVDLFNGLDDLKNHVIRAVGDPEKRFHEDALRMMRAVRFMSQL- 174
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLD 237
E ++S A K LK +S ERI E KL + A +
Sbjct: 175 EFKLESKTQQAIKDNHKLLKKISVERIREEFVKLGLGPHARQAFQVFLDTNLSEDVPDFG 234
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
++ L Q+ + +SL I+L+ + I + + + +
Sbjct: 235 GKKDQLAIFPQL----KFSPTMENSLWSLIILLLKLPNEQIHRFMRDWKNSNAMTEQVER 290
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
N + + + +L G++ +I + + + + ++ +
Sbjct: 291 IINLFDLLSSHAPSDY--ELFLAGEETLINTIDVAHIV----GQPISSEALVDRYMALPI 344
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
K + G ++ G+ PG K+G L ++ ++ + +QE + L +
Sbjct: 345 KKASELAVDGRFLIDRGMRPGAKLGQTLNKIRELVVSGEVENNQEAIESYLTTI 398
>gi|83591706|ref|YP_425458.1| polynucleotide adenylyltransferase region [Rhodospirillum rubrum
ATCC 11170]
gi|83574620|gb|ABC21171.1| Polynucleotide adenylyltransferase region [Rhodospirillum rubrum
ATCC 11170]
Length = 525
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 124/431 (28%), Positives = 201/431 (46%), Gaps = 31/431 (7%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFS 64
W D + +++ L ++ VGG VRDSL+ DIDIATT P+RV+ +
Sbjct: 75 DWLVDPRTVAVMTALTAEGGEARFVGGCVRDSLLRRDPLRPMDIDIATTERPERVIALIE 134
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
K +PT +++GT+ ++ K F++TTLR D DGR+A+V FT ++ D+ RRDFTI
Sbjct: 135 AAGLKAVPTGLAHGTLTVVAGGKPFEVTTLRRDTACDGRHAEVAFTTSFREDAGRRDFTI 194
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
NAL AD++G+V DY G++DL ++FIG RI EDYLRILRFFRF A +G D
Sbjct: 195 NALSADREGRVFDYFDGISDLHAGWVRFIGRPMDRIAEDYLRILRFFRFHARFGRPPADP 254
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
D L A GL LS+ER+ SE+ K+L+ +P ++ M + + + + +++
Sbjct: 255 DALSACAAQAAGLDRLSAERVRSELLKILDTADPAGVLMAMRGVHVLERVLPEAGDVTNL 314
Query: 245 QLSQVIEA--EQVFEWKIDSLLRFIVLI-------------------SWQDKKSILSMAK 283
++ ++E + D L R ++ S + S ++
Sbjct: 315 RMLTLLETRGLMLPGLGADPLRRLACVVGPPALSAGSGPPALSAVAGSDPSRDSGAALGA 374
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY---GDKVMIAKLKIFLALHYNNL 340
+ L R L + + L L G ++I + + A
Sbjct: 375 RLRLSRAETARLTGMLDAPAGRWPDPDAGEGALRRLLDGEGKDLVIDRALLRWAAERGKG 434
Query: 341 TH---QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397
+ + T ++ + W P FPL G D + G+ G VG L + W+
Sbjct: 435 PYPRAERTARWRALIETALGWTAPTFPLGGRDALACGLK-GPAVGEALAALRGRWLEGGC 493
Query: 398 QLSQEDLHHLL 408
Q ++++ L
Sbjct: 494 QAGRDEMLAWL 504
>gi|312869131|ref|ZP_07729305.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Lactobacillus oris PB013-T2-3]
gi|311095377|gb|EFQ53647.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Lactobacillus oris PB013-T2-3]
Length = 401
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 83/399 (20%), Positives = 156/399 (39%), Gaps = 15/399 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L + + ++ VGG VRD+++ + DIDIAT+ P + +IF + +
Sbjct: 11 EPARPVLQKIEQAGFEAYFVGGCVRDTILGDPIHDIDIATSAYPSEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ I+ ++ TT R++ R V F R D RRDFTINAL
Sbjct: 67 TGIEHGTVMILDHGVGYETTTFRTESGYQDFRRPDNVTFVRSLAEDLQRRDFTINALALR 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G+V+D GL DL+ R I+ +GD + R ED LR++R RF + ID L
Sbjct: 127 ENGEVVDLFDGLGDLQRRLIRAVGDPNERFHEDALRMMRAVRFASKLDFV-IDRPTLEGI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L ++ ERI E+ K+ +NP + + + ++ ++
Sbjct: 186 NANAHLLAKIAVERIRVELEKMFLGQNPPAGLKD-FLETGLYQYCPGLKAARQQLSLLLV 244
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
A +D + + + K + + E + +
Sbjct: 245 NANGWALTNVDQVWALLAVQLGLSGKQAAKFLRTWKTSNETIRQVGKIILAVNALRQ--K 302
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L + G + ++ + Q + + ++ + G +
Sbjct: 303 QVTPDLMFTVGWPALSDANQVAAVYGWQ----QAAASLKKQYDELPIKTAKELAVDGRTL 358
Query: 371 V-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ + G+ PG +G +L ++ +N + +L +
Sbjct: 359 IQEAGLKPGPALGKVLNTLVEDVVNGRLANDKAELLQRV 397
>gi|313123922|ref|YP_004034181.1| cca-adding enzyme [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|312280485|gb|ADQ61204.1| CCA-adding enzyme [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
Length = 396
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 173/398 (43%), Gaps = 18/398 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L L + ++ VGG VRD L+ + D+DIAT+ P+ V F+K+ I T
Sbjct: 12 QAMPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKETFAKS----IDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ITT R++ R KV F ++ D RRDFTINAL ++
Sbjct: 68 GIQHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTINALAMNR 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
QG++ID GL DL+ R IK +G A R ED LR++R RF + +++ A I
Sbjct: 128 QGEIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQLSF-SLEEKTRQAII 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L +S ERI E KL K+ A + G + L ++ L + +
Sbjct: 187 NNHELLSKISVERIREEFVKLALGKDSRQAFKDFLATGLSEECPGLAGKKDQLSVFTDLK 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + L +++ DK S A K S + I ++ S
Sbjct: 247 AGPD--DETVFWSLIAVLINLPADKISPFMRAWKNSNAMNQQVRQIVAAFDLLSRGGESD 304
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ + G + + A LK+ L + +L + + + G +
Sbjct: 305 FD----LFEIGQENLEAALKLAGLL----GKPLSSQVLLDRYNRLPIKAAGELAIDGQWL 356
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+K GI P ++G +L + ++ + SQ + L
Sbjct: 357 IKEGIKPSPELGQLLRKALEGVVSGQVENSQAAIAEFL 394
>gi|85706914|ref|ZP_01038004.1| Poly A polymerase family protein [Roseovarius sp. 217]
gi|85668525|gb|EAQ23396.1| Poly A polymerase family protein [Roseovarius sp. 217]
Length = 381
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 130/405 (32%), Positives = 198/405 (48%), Gaps = 28/405 (6%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
V W + +L+ ++ VGG VR++L+ +V DIDIAT P+ VM +
Sbjct: 2 KVSGAWIEAEATQAVCRMLSGAGHQALFVGGCVRNALLGETVADIDIATDARPEVVMDLA 61
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
+ K +PT I +GTI ++ ++TT R D+ T GR+A V F+ D +D+ RRDFT
Sbjct: 62 AAAGLKPVPTGIEHGTITVVSSHIPHEVTTFREDVETFGRHAVVAFSMDIHSDARRRDFT 121
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181
+NALYA G VID + GL DLR R ++FI +A RI EDYLRILRFFRF A YG+
Sbjct: 122 MNALYAQADGTVIDPLAGLEDLRARRVRFIENADQRIREDYLRILRFFRFHAWYGDPEGG 181
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+D+DGL A GL LS ER+ +E+ KLL A +P ++ M G+ +
Sbjct: 182 LDADGLAACAANLDGLARLSRERVGAEMCKLLGAPDPARSVAAMQAAGVLNAVLPGA--- 238
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L+ ++ E D++LR L S+A++ L +
Sbjct: 239 GARPLALLVHQETETNTAPDAILRLAALGG-------ESVAERLRLSKSDTR-----RLA 286
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ +K + + +L Y YG + A L + A ++ + D+
Sbjct: 287 HLQEKAAGLMQAAELGYRYGVEEGQAILLLRGAWLETLVSP-------ETAEDLKMGAAA 339
Query: 362 LFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
FP+ D++ Y G +G L ++ WI+S F LS++DL
Sbjct: 340 RFPVAATDLMPDY---SGPALGARLQALERRWIDSRFALSRDDLL 381
>gi|255975856|ref|ZP_05426442.1| poly A polymerase [Enterococcus faecalis T2]
gi|255968728|gb|EET99350.1| poly A polymerase [Enterococcus faecalis T2]
Length = 404
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 93/413 (22%), Positives = 171/413 (41%), Gaps = 20/413 (4%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M +I + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ +
Sbjct: 1 MTTIPNEF----KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIK 56
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSL 118
+IF + + I +GT+ ++ + +++TT R++ R +V F R K D
Sbjct: 57 QIFK----RTVDVGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLK 112
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDFTINAL D G++ID G+ DL N+TI+ +G+ H R ED LR++R RF +
Sbjct: 113 RRDFTINALALDSTGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLD 172
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
K + + KI + LL + L
Sbjct: 173 FKIEEKTLAAIAEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPKLRE 232
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
Q L +L + + E + +LL + + + I S K + L ++ +
Sbjct: 233 QGAGLFRLMDLPARQIETEAEAWALLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQL 289
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ LS + Y G++ + ++ +++ +
Sbjct: 290 VRG--LRFRLSNDWQPMMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIH 343
Query: 359 KKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++ +TG D++ PGK +G ++ +Q + S + QE L +K
Sbjct: 344 QRHELAITGKDLLAILEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 396
>gi|58337270|ref|YP_193855.1| tRNA CCA-pyrophosphorylase [Lactobacillus acidophilus NCFM]
gi|227903855|ref|ZP_04021660.1| tRNA CCA-pyrophosphorylase [Lactobacillus acidophilus ATCC 4796]
gi|73619782|sp|Q5FKF0|CCA_LACAC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|58254587|gb|AAV42824.1| tRNA nucleotidyltransferase, polyA polymerase polyA [Lactobacillus
acidophilus NCFM]
gi|227868742|gb|EEJ76163.1| tRNA CCA-pyrophosphorylase [Lactobacillus acidophilus ATCC 4796]
Length = 399
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 95/400 (23%), Positives = 174/400 (43%), Gaps = 16/400 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L++ V DIDI T+ P+ V +F K+ I T
Sbjct: 14 AMPVLQRLEDAGFEAYFVGGSVRDVLLDRHVHDIDITTSAYPEEVKELFEKS----IDTG 69
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D +
Sbjct: 70 IKHGTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDIR 129
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID G+ DL+ R I+ +G+ R ED LR++R RF + E ++ A
Sbjct: 130 GQIIDLFNGVEDLKKRVIRAVGNPETRFHEDALRMMRAVRFMSQL-EFKLEEKTERAIKD 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ LK +S ERI E K+ + A + + +++ L V
Sbjct: 189 NHELLKKISIERIREEFVKMGLGSHSRQAFQVFLDTQLSEDVP---NFAGKKDLLSVYPK 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
Q SL I+++ +SI + + + + N + +
Sbjct: 246 LQFSPTMETSLWSIIIILLKMPNESIGKFMRAWKNSNAMTEKVERIINLFDLISEHAPTD 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ G++ +I + + L + ++ + K + G +++
Sbjct: 306 Y--ELFQAGEETLINTIDVAHIL----GQPISSEALVDRYMALPIKKSSELAIDGRFLIE 359
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
G+ PG K+G L + ++ ++S + +QE + L +L
Sbjct: 360 QGMRPGAKLGETLNNIRKLVVSSEIENTQEAIEVYLDELK 399
>gi|221131830|ref|XP_002154568.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
Length = 436
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 121/414 (29%), Positives = 203/414 (49%), Gaps = 29/414 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D D++ + ++ K + IVGGAVRD L+ +DID++TT P +++ +FS+ + +
Sbjct: 36 LLDDDVVGLCNIFIKKGFEIRIVGGAVRDVLLGNPAKDIDLSTTATPQQMVEVFSENKIR 95
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I T +++GT+ + F +TTLR D+ TDGR+AKV FT DWK D+ RRD T N++
Sbjct: 96 FIETGLAHGTLTAHYNGRDFQVTTLRYDIETDGRHAKVEFTNDWKLDAERRDLTFNSMSM 155
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY--GEKNIDSDGL 187
D + DY G NDL+ ++F+G+ +RI EDYLRILR+FRF+ + D L
Sbjct: 156 DVNAVLYDYFNGENDLKQGVVRFVGNVENRIREDYLRILRYFRFYGRIAPNIHSHDEKTL 215
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN-GGIFKEIFLDVQEISLDQL 246
+GLK L+ ERIW E++K+L + ++ M F V E +L
Sbjct: 216 NTIKTLSEGLKNLAVERIWLEVSKILTGPLAPHLLLLMQQLNVTESIGFPIVLEDNLKLF 275
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
V + + +LL + +++K + K+ L + R + +
Sbjct: 276 ETVWTQTRNVDVSPVTLL----VTLLENEKIMEDFGSKWKLSNKERIMGLFIIS------ 325
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL---------SDIIH 357
+ Y +K + + + L+ N + Q++ ++
Sbjct: 326 -------HRSLRNYSEKCPLKPYQDLIVLNSNKGDASVRERVRQLMFYHGKITESFELDK 378
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
W P+FP+TG D+ GI G + G IL+ K+ W+NS + S+EDL + ++
Sbjct: 379 WDIPIFPITGLDLKNCGIKQGPEFGKILIKLKKIWMNSYYCDSKEDLLKKIPEI 432
>gi|307703289|ref|ZP_07640234.1| RNA nucleotidyltransferase [Streptococcus oralis ATCC 35037]
gi|307623155|gb|EFO02147.1| RNA nucleotidyltransferase [Streptococcus oralis ATCC 35037]
Length = 394
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 97/399 (24%), Positives = 178/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IFS+T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFSRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIIDLFHGLEDLENQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ELEQETFEAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S ++L ++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRVGLSSMIESQA--YDYLPDMAASREKLQKLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + K K + R+ + ++ + +
Sbjct: 241 EADFTFE-SSEQAWAALLWALEIKDAQPFLKAWKTSRQFAKQVQDLLTILALREEGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L +L + I + + K + G ++K
Sbjct: 300 RDCYRFD------LDSLLQAESLRQAQGKEVNPQAIKETYHSLTIHDKKEIQINGGILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++ +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENDRQAIHTYLRE 392
>gi|240144360|ref|ZP_04742961.1| polyA polymerase family protein [Roseburia intestinalis L1-82]
gi|257203611|gb|EEV01896.1| polyA polymerase family protein [Roseburia intestinalis L1-82]
Length = 446
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 94/436 (21%), Positives = 176/436 (40%), Gaps = 44/436 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ L ++ VGG VRD++++ + D DI T P++V IF++ I T
Sbjct: 9 VKFIIETLETHGYEAYAVGGCVRDTMLHRTPGDWDITTQAKPEQVKEIFAEKNIHTIDTG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + F++TT R D + R+ K FT D RRDFTINA+ + +
Sbjct: 69 IQHGTVTVMVEHEGFEVTTYRIDGEYEDARHPKNVQFTASLLEDLKRRDFTINAMAYNDK 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ID G+ DL I+ +G A R ED LR+LR RF A G +I+++ A +K
Sbjct: 129 NGLIDAFDGVGDLERGVIRCVGCAMERFSEDALRMLRAVRFAAQLGF-DIEAETKEAMVK 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ +S+ERI +E+ KL+ + +P I + G+ + + +
Sbjct: 188 LAPNIAKVSAERIQTELVKLITSAHPGE-IRTAWETGLTAVFLPEFDRMMATPQNTKHHC 246
Query: 253 EQVFEWKI--------DSLLRFIVLISW----------------------QDKKSILSMA 282
V E + D +LR +L+ + + +
Sbjct: 247 YSVGEHTVAALEHIVGDKVLRLTMLLHDVAKPVCRTTDVSGNDHFYGHPKEGSEMARKIL 306
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
++ + + + + LS +++ G + A + A +
Sbjct: 307 RRLKFDNDTTDKVCRLVCWHDDNPPLSEKNVRRAVSRIGVEQYPALFAVKRADILAQSEY 366
Query: 343 QDTCFI----------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
Q + ++L + G D++ G+ PGK++G L +
Sbjct: 367 QREEKLSYVDGYEALYREILEKNQCLTIRDLAVNGSDLIAAGMKPGKEIGETLKSLLELV 426
Query: 393 INSSFQLSQEDLHHLL 408
++ ++E L +
Sbjct: 427 LDDPELNNRELLLERI 442
>gi|312977290|ref|ZP_07789038.1| poly A polymerase [Lactobacillus crispatus CTV-05]
gi|310895721|gb|EFQ44787.1| poly A polymerase [Lactobacillus crispatus CTV-05]
Length = 399
Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats.
Identities = 96/414 (23%), Positives = 177/414 (42%), Gaps = 19/414 (4%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M+ I + +L +L ++ VGG+VRD L++ V D+DI T+ P+ V
Sbjct: 1 MIKIDNLPEIFTK-AMPVLQILENAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVK 59
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSL 118
+F K+ I T I +GT+ ++ + ++ITT R++ R V F ++ D
Sbjct: 60 ELFDKS----IDTGIKHGTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLK 115
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDFTINAL D +G+++D GL+DL+N I+ +GD R ED LR++R RF +
Sbjct: 116 RRDFTINALAMDTRGQIVDLFNGLDDLKNHVIRAVGDPEKRFHEDALRMMRAVRFMSQL- 174
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLD 237
E ++S A K L+ +S ERI E KL + A +
Sbjct: 175 EFKLESKTQQAIKDNHKLLEKISVERIREEFVKLGLGPHARQAFQVFLDTNLSEDVPDFG 234
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
++ L Q+ + +SL I+L+ + I + + + +
Sbjct: 235 GKKDQLAIFPQL----KFSPTMENSLWSLIILLLKLPNEQIHRFMRDWKNSNAMTEQVER 290
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
N + + + +L G++ +I + + + + ++ +
Sbjct: 291 IINLFDLLSSHAPSDY--ELFLAGEETLINTIDVAHIV----GQPISSEALVDRYMALPI 344
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
K + G ++ G+ PG K+G L ++ ++ + +QE + L +
Sbjct: 345 KKASELAVDGRFLIDRGMRPGAKLGQTLNKIRELVVSGEVENNQEAIESYLTTI 398
>gi|293365842|ref|ZP_06612547.1| tRNA adenylyltransferase [Streptococcus oralis ATCC 35037]
gi|322375606|ref|ZP_08050118.1| polyA polymerase [Streptococcus sp. C300]
gi|291315666|gb|EFE56114.1| tRNA adenylyltransferase [Streptococcus oralis ATCC 35037]
gi|321279314|gb|EFX56355.1| polyA polymerase [Streptococcus sp. C300]
Length = 399
Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats.
Identities = 97/399 (24%), Positives = 178/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IFS+T
Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFSRTA----DIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 129 GEIIDLFHGLEDLENQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ELEQETFEAMKT 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S ++L ++ +
Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRVGLSSMIESQA--YDYLPDMAASREKLQKLFDL 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + K K + R+ + ++ + +
Sbjct: 246 EADFTFE-SSEQAWAALLWALEIKDAQPFLKAWKTSRQFAKQVQDLLTILALREEGELSK 304
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L +L + I + + K + G ++K
Sbjct: 305 RDCYRFD------LDSLLQAESLRQAQGKEVNPQAIKETYHSLTIHDKKEIQINGGILIK 358
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++ +H LR+
Sbjct: 359 EYGYQPGPDLGEILTEIEFAIVDGELENDRQAIHTYLRE 397
>gi|109035906|ref|XP_001100764.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial isoform 2
[Macaca mulatta]
Length = 439
Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats.
Identities = 117/404 (28%), Positives = 201/404 (49%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L N+ L K + I GGAVRD L + QD+D ATT P ++ +F +
Sbjct: 40 LFTEGLKNLTELFVKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNKGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D++
Sbjct: 160 LGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDAET 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + +N ++H+ SL++
Sbjct: 220 LEAIAENAKGLAGISGERIWVELKKILVGNH-VNHLIHLIYDLDVAPYIGLPANASLEEF 278
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+V + + F K +LL + + + + + + +E + + +
Sbjct: 279 DKVSKNVEGFSPKPMTLLASLFKVQDD----VTKLDLRLKIAKEEKNLGLFIVKN--RKD 332
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + Y D ++ ++ L +Q + L ++ W P FP++
Sbjct: 333 LIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCL---LKEMQQWSIPPFPVS 389
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +Q+ +++L +++
Sbjct: 390 GHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKR 433
>gi|322385626|ref|ZP_08059270.1| polyA polymerase family protein [Streptococcus cristatus ATCC
51100]
gi|321270364|gb|EFX53280.1| polyA polymerase family protein [Streptococcus cristatus ATCC
51100]
Length = 401
Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats.
Identities = 95/400 (23%), Positives = 184/400 (46%), Gaps = 16/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + + ++ VGG+VRD+L+N + D+DIA++ P+ + IFS + +
Sbjct: 12 EALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIASSAYPEEIKTIFS----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++ITT R++ + R ++V F R + D RRD TINAL +Q
Sbjct: 68 GIEHGTVLVLEGQGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDLTINALALNQ 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+G+++D GL D++NRT++ +G A R ED LRI+R FRF A + +++ A
Sbjct: 128 EGEIVDLFNGLADMKNRTLRAVGVASERFNEDALRIMRGFRFQA-GLDFDLEDLTFQAMA 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + FL + S + L ++++
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLMAPFWRKGLESLIKAAA--YDFLPDMKHSAEALQELLD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
S + L+ K + K + E + + ++ S+
Sbjct: 245 GLAEDFQFASSEQAWAALLLALKVKDVRKFLKHWKTSNEFQKRVNQLVAVYEIRQERSLS 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y + + +L + I + + K +TG ++
Sbjct: 305 KRDCYQYD------LDLILQAESLRQAAGLPVEFEVIEATHAALTIHDKHEIVVTGSHLI 358
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG ++G IL + ++ S+E++ + +++
Sbjct: 359 RDYGFKPGPELGQILTKIEWAIVDGELANSKEEIMNFIKE 398
>gi|331265998|ref|YP_004325628.1| tRNA nucleotidyltransferase [Streptococcus oralis Uo5]
gi|326682670|emb|CBZ00287.1| tRNA nucleotidyltransferase [Streptococcus oralis Uo5]
Length = 394
Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats.
Identities = 99/399 (24%), Positives = 180/399 (45%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL+N+ ++ +G A R ED LRI+R FRF A G ++S+ VA
Sbjct: 124 GEIIDLFHGLEDLKNQVLRAVGVASERFNEDALRIMRGFRFQASLGF-KLESETFVAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRVGLASMIESRA--YDYLPDMAGSQDKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + K K + R+ + ++ + +
Sbjct: 241 ETEFTFE-SSEQAWAALLWALEIKDAQPFLKAWKTSRQFAKQVQDLLTILALREEGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L L + I + + K + G ++K
Sbjct: 300 RDCYRFD------LDSLLQAENLRQAQGKEVNPQAITETYHSLTIHDKKEIQINGGILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++ +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENDRQAIHAYLRE 392
>gi|312864188|ref|ZP_07724422.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Streptococcus vestibularis F0396]
gi|311100189|gb|EFQ58398.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Streptococcus vestibularis F0396]
Length = 400
Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats.
Identities = 91/401 (22%), Positives = 176/401 (43%), Gaps = 16/401 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + ++ VGG+VRD+L+N + D+DIA++ P+ +IF + +
Sbjct: 13 ALPILEKIKVAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFE----RTVDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ +++TT R++ + R + V F R + D RRDFT+NA ++
Sbjct: 69 IEHGTVLVLENGGEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNEN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++ID GL DL NR ++ +G A R ED LRI+R RF A +I+ A
Sbjct: 129 AEIIDKFNGLADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASLDF-DIEEKTFQAMAS 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + I + ++ + D QE + + V +
Sbjct: 188 HAPLLEKISIERSFIEFDKLLLAPHWKKGIKALLATKAYQYL-PDFQETAEEWQDFVADY 246
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ F + S + + + S KK+ + + S + + ++ +
Sbjct: 247 VEGFRFT-SSEQAWAATLLALKHDNPRSFLKKWKTSVNFQKTVQSLVDIFNFRLERAVTK 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ Y YG +++ + D I ++ ++ K + G ++K
Sbjct: 306 --QDVYQYGKELLEEAETLR----RAQGLDVDYERIAELDGQLLIHDKHEIVVNGGTLMK 359
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
G PG +G L + ++ ++E + ++ +
Sbjct: 360 ELGFKPGPDLGRALKAIENAIVDGQLANAEEAIMAFVQAMK 400
>gi|163742637|ref|ZP_02150023.1| polyA polymerase family protein [Phaeobacter gallaeciensis 2.10]
gi|161384222|gb|EDQ08605.1| polyA polymerase family protein [Phaeobacter gallaeciensis 2.10]
Length = 384
Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats.
Identities = 122/410 (29%), Positives = 193/410 (47%), Gaps = 30/410 (7%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
++ +Q KW D + ++ +L KG + VGG VR++L+ + V D+D++T + P RVM
Sbjct: 1 MTHIQAKWLEDPAVQHVCDVLTKGGAEVYFVGGCVRNALLGVPVSDLDLSTNVPPQRVMA 60
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ + K IPT I +GT+ ++ R ++ITT R D++TDGR A V F+ + D+ RRD
Sbjct: 61 LAEEAGIKAIPTGIDHGTVTLVYRGTPYEITTFRRDVVTDGRRAVVAFSDRIEEDAARRD 120
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FT+NALYA G ++D + GL DLR R ++FIG + RI EDYLR LR+FRF + YG +
Sbjct: 121 FTMNALYARPDGGLVDPLNGLPDLRARLVRFIGSSAQRIREDYLRSLRYFRFHSWYGNPD 180
Query: 182 --IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
D D L A + G+ LS ER+ SE+ KLL A +P AI M G+ I
Sbjct: 181 AGFDPDALSAIAENLDGIGSLSRERVGSEVLKLLAAPDPAPAIAVMRQVGLLSLILPGSD 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ +L L + + L + + L + +
Sbjct: 241 DRALGPLVHLE------GGRPAEPLCRLAALGGDASWEA------LRLSKTQAADVRLLR 288
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ Y +G + + AL +T + ++I
Sbjct: 289 AAAEGTDGPAELA-----YHHGVSTARNVMLLRSALLEMPITP-------DLEAEITKGA 336
Query: 360 KPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+FPL+ D++ G +G L +++WI S F L ++ L L
Sbjct: 337 GAVFPLSAKDLMPDL---QGAALGAALKSLQKDWIRSGFMLDRDALLKRL 383
>gi|148997378|ref|ZP_01824983.1| polyA polymerase family protein [Streptococcus pneumoniae
SP11-BS70]
gi|168575248|ref|ZP_02721211.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Streptococcus
pneumoniae MLV-016]
gi|169834239|ref|YP_001694961.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae Hungary19A-6]
gi|147756433|gb|EDK63474.1| polyA polymerase family protein [Streptococcus pneumoniae
SP11-BS70]
gi|168996741|gb|ACA37353.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Streptococcus pneumoniae Hungary19A-6]
gi|183578709|gb|EDT99237.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Streptococcus
pneumoniae MLV-016]
gi|301794565|emb|CBW37009.1| CCA-adding enzyme [Streptococcus pneumoniae INV104]
gi|301800387|emb|CBW33018.1| CCA-adding enzyme [Streptococcus pneumoniae OXC141]
Length = 394
Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats.
Identities = 97/399 (24%), Positives = 180/399 (45%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + GD ++K
Sbjct: 300 RDCYRFD------IDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEIQINGDILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392
>gi|241674815|ref|XP_002400153.1| poly(A) polymerase, putative [Ixodes scapularis]
gi|215504191|gb|EEC13685.1| poly(A) polymerase, putative [Ixodes scapularis]
Length = 455
Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats.
Identities = 115/417 (27%), Positives = 202/417 (48%), Gaps = 27/417 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
++ ++ + + + I GGAVRD LM+ + QD+D ATT P+++ +F +
Sbjct: 49 LFTPEVKELVDIFRRHGHELRIAGGAVRDLLMHKAPQDLDFATTATPNQMKSMFEDEGVR 108
Query: 70 VIPT-SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I T +GT+ K F++TTLR D++TDGR+A+V FT DW+ D+ RRD T+NAL
Sbjct: 109 MINTKGEKHGTVTARINDKTNFEVTTLRIDVVTDGRHAEVEFTTDWETDANRRDLTVNAL 168
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSD 185
+ G V D+ G+ DL R + F+GDA RI EDYLRILR+FRF+ + + +
Sbjct: 169 FLGLDGTVYDFFHGIEDLEKRRVAFVGDAAQRIREDYLRILRYFRFYGRIAVEPDSHEPE 228
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L A + GL +S ER+W E+ K+L + + + G+ + L + L +
Sbjct: 229 VLTAIRENVGGLGGISGERLWVELKKILVGNFNRELVCRLVDLGVSPFLGLP-ESPDLVE 287
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+V E + + +LL ++ + +L+M + L R ++ ++
Sbjct: 288 FEKVCERSKHLFPQPTTLLAALLQT----EAEVLNMHARLKLSAYERDLVLFVVKHRCDK 343
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL------QVLSDIIHWK 359
K GD++ + +F + C +L ++L W
Sbjct: 344 KC------------LGDRLKPYQALLFTTKGKVGDVQEWICEVLKYRADAELLERFRCWD 391
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
P FP+ G+ +++ G+ G K +L K+ W S F ++ ++L L +++A +
Sbjct: 392 VPRFPVNGNMLLERGLRSGPKFATVLGKLKEIWFESDFAMTSDELLQRLPEILAQVK 448
>gi|115640822|ref|XP_787015.2| PREDICTED: similar to TRNA nucleotidyl transferase, CCA-adding, 1
[Strongylocentrotus purpuratus]
gi|115929252|ref|XP_001177380.1| PREDICTED: similar to TRNA nucleotidyl transferase, CCA-adding, 1
[Strongylocentrotus purpuratus]
Length = 411
Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats.
Identities = 120/409 (29%), Positives = 201/409 (49%), Gaps = 18/409 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L + L K + + I GGAVRD L +S QD+D AT PD++ +F+K +
Sbjct: 11 LFTPELKQLAELFEKYQYELRIAGGAVRDLLTKVSPQDVDFATIATPDQMKEMFTKEGIR 70
Query: 70 VIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI K+ F+ITTLR D +TDGR+A+V FT DW+ D+ RRD TIN++
Sbjct: 71 MINAKGEKHGTITARINDKENFEITTLRIDRVTDGRHAEVEFTTDWRTDAERRDLTINSM 130
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSD 185
+ G + D+ G L + F+G+A RI EDYLRILR+FRF+ +
Sbjct: 131 FLGLDGTLYDFFNGKEALERCHVAFVGNAATRIQEDYLRILRYFRFYGRIARESNKHTPE 190
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L A + GL +S ERIW E+ K+L + I MY+ + + I L E L +
Sbjct: 191 TLQAIRENGHGLAGISGERIWMEVRKILTGNFAADLIHCMYDLDLARHIGLP-PEADLQE 249
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
L +V + Q ++L + +D+ +L+M ++ + E R + ++
Sbjct: 250 LHKVYQRSQSLHPHPVTVLSALF----KDENDVLTMEQRMRISAEERKTALYVIAERGDK 305
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ + + + + I K + + Q+L D W FPL
Sbjct: 306 PHKNPLKPYQDIVVCSKEKNIIKYVSEVLKYRGES---------QMLVDFRSWDVAKFPL 356
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+G D++ G+P G+ +G ++ +Q W++S F+ ++E+L L++ +
Sbjct: 357 SGKDLLAAGVPKGRGLGGVMETVRQWWMDSDFKATKEELLERLQETMQE 405
>gi|307068199|ref|YP_003877165.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus
pneumoniae AP200]
gi|306409736|gb|ADM85163.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus
pneumoniae AP200]
Length = 399
Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats.
Identities = 97/399 (24%), Positives = 180/399 (45%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 129 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 246 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 304
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + GD ++K
Sbjct: 305 RDCYRFD------IDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEIQINGDILIK 358
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 359 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 397
>gi|168183936|ref|ZP_02618600.1| polyA polymerase family protein [Clostridium botulinum Bf]
gi|237795817|ref|YP_002863369.1| polyA polymerase family protein [Clostridium botulinum Ba4 str.
657]
gi|182672935|gb|EDT84896.1| polyA polymerase family protein [Clostridium botulinum Bf]
gi|229261764|gb|ACQ52797.1| polyA polymerase family protein [Clostridium botulinum Ba4 str.
657]
Length = 450
Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats.
Identities = 100/440 (22%), Positives = 183/440 (41%), Gaps = 42/440 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK+IP
Sbjct: 12 KGVEYIINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIIP 71
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T + +GT+ I+ +++TT R + + R +V FT + K D RRD TINA+ +
Sbjct: 72 TGLKHGTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLKEDLKRRDLTINAMAYN 131
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +++DY GL DL N+ I+ +GD+ R+ ED LR+LR RF + ++ ++
Sbjct: 132 DKTRLVDYFHGLEDLNNKIIRCVGDSKDRLNEDSLRMLRCIRFASQLNFH-MEESTKLSI 190
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ + + +S ERI E+ K+L + P+ I ++ + I +++ + +
Sbjct: 191 RELSRNIANVSMERIRDELCKILVSSQPVYGIRNIVELNLVDYIIPELKACVGFEQHNIH 250
Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDKKSIL----------------------S 280
+ V+ LR L+ K
Sbjct: 251 HDKDVYGHILSVVENVPNKLELRLAALLHDIGKPKCFSIGDNGQGHFYGHQKISADMTKD 310
Query: 281 MAKKFSLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ K+ + Y + + L IKK + ++ +A +
Sbjct: 311 ILKRLKFDNKTIYKVDKLVYNHMTRYNKLRTSSIKKFINKVEIDNLDDLFELQIADIKGS 370
Query: 340 LTHQD--------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
++LS+ + G D++K GI GK++G +L
Sbjct: 371 AKEYHSFDNVLNLKIKCEKILSEKQPLTIKDLDINGYDLMKLGINQGKEIGIMLNKLLDI 430
Query: 392 WINSSFQLSQEDLHHLLRKL 411
+ + ++EDL ++ +
Sbjct: 431 ILENPNLNNKEDLIKIVESI 450
>gi|229550019|ref|ZP_04438744.1| tRNA adenylyltransferase [Enterococcus faecalis ATCC 29200]
gi|229304932|gb|EEN70928.1| tRNA adenylyltransferase [Enterococcus faecalis ATCC 29200]
gi|327535129|gb|AEA93963.1| tRNA adenylyltransferase [Enterococcus faecalis OG1RF]
Length = 424
Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats.
Identities = 91/401 (22%), Positives = 168/401 (41%), Gaps = 16/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 29 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 84
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 85 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 144
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + K + +
Sbjct: 145 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFKIEEKTLAAIA 204
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
KI + LL + L Q L +L +
Sbjct: 205 EFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPKLREQGAGLFRLMDLP 264
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + +LL + + + I S K + L ++ + + LS
Sbjct: 265 ARQIETEAEAWTLLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQLVRG--LRFRLSN 319
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G++ + ++ +++ + ++ +TG D+
Sbjct: 320 DWQPMMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIHQRHELAITGKDL 375
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PGK +G ++ +Q + S + QE L +K
Sbjct: 376 LAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 416
>gi|327266138|ref|XP_003217863.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial-like
[Anolis carolinensis]
Length = 499
Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats.
Identities = 118/415 (28%), Positives = 206/415 (49%), Gaps = 22/415 (5%)
Query: 2 VSIVQHKW--FHDSDLINILSLLNKGEDK-SCIVGGAVRDSLMNLSVQDIDIATTILPDR 58
+ + ++ L ++ K I GGAVRD L + QD+D AT+ P +
Sbjct: 100 MKLESAEFQSLFTPGLKSV------AGMKTVRIAGGAVRDLLSGMKPQDVDFATSATPTQ 153
Query: 59 VMRIFSKTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
+ +F T ++I +GTI + F+ITTLR DL+TDGR+A+V FT DW+ D+
Sbjct: 154 MKEMFQATGVRMINNRGERHGTITARLHDENFEITTLRIDLVTDGRHAEVEFTTDWEKDA 213
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRD TIN+++ G + D+ G +DL+N+ ++F+G A+ RI EDYLRILR+FRF+
Sbjct: 214 ERRDLTINSMFLGLDGTLYDFFNGYDDLKNKKVRFVGQANQRIQEDYLRILRYFRFYGRI 273
Query: 178 GEK--NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
EK + + L A KGL +S ERIW E+ K+L + + I MY + I
Sbjct: 274 AEKPGDHEPKTLEAIKANAKGLAGISGERIWMELKKILVGNHANHLIRLMYELDVANYIG 333
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
L V +L + V + Q K ++L ++ + I + + + ++ +
Sbjct: 334 LPV-NGNLQEFDTVCKNVQNLFPKPMTVLTSLLKVPDD----ISKLDLRLKISKDEKSLG 388
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
+ + + + + Y D ++ ++ + L +Q + L ++
Sbjct: 389 LFLLKH--RRDLVKAIDTTEPLKPYQDFIIDSREVDATSRICELLKYQGEEGL---LHEM 443
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
W P FP++G D+ + GI GK++G +L + +W S +++ +E+L ++K
Sbjct: 444 QQWSVPTFPVSGHDIRRTGISSGKEIGVLLQELRDQWKKSGYRMEKEELLSYVKK 498
>gi|217976975|ref|YP_002361122.1| Polynucleotide adenylyltransferase region [Methylocella silvestris
BL2]
gi|217502351|gb|ACK49760.1| Polynucleotide adenylyltransferase region [Methylocella silvestris
BL2]
Length = 419
Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats.
Identities = 128/401 (31%), Positives = 209/401 (52%), Gaps = 19/401 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L I + ++ D++ IVGGAVR++L+ ++DID+ATT P V+ ++IP
Sbjct: 23 PGLQRIFAAIDIDGDETRIVGGAVRNALLGRKIEDIDLATTAAPPLVIERARAASLRIIP 82
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
T + +GT+ ++ + F++T+LR D+ TDGR A V F RD+ AD+LRRDFTINAL+ D+
Sbjct: 83 TGLDHGTVTLLVDGRAFEVTSLREDIETDGRRATVRFGRDFCADALRRDFTINALFLDKS 142
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ D+VG L D+ R ++FIGD RI EDYLRILRFFRF A YGE ID DGL+A+++
Sbjct: 143 GRLFDFVGALADIEARRVRFIGDPETRIREDYLRILRFFRFSADYGEGPIDGDGLLAAMR 202
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
A+ GL LS ER+ +E+ KL+ A+ A+ M G+ + + +L +++E
Sbjct: 203 ARAGLAQLSRERVRAELLKLVAARRAPEAVEAMSGAGLLGPLI--ASAPNPARLRRLVEQ 260
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF----LISFFNCNFNQKTL 308
+ + D LLR + I + + +A++ L R +
Sbjct: 261 DA----RADPLLR-LAAICLETPEDAERIAERLRLSNAERDRLSRAARVMLALHGKPVPP 315
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ L + +G + + + ++ + + +P P +G
Sbjct: 316 PKHFLNVLLFRHGRESALDGFTLAAIGASSSGR-------RDAIDFLKTAPEPRLPFSGA 368
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D++ G G+ VG+ L ++ WI + F +E L LL
Sbjct: 369 DLIARGF-SGRAVGDALAALRERWIEAEFSDDREKLDALLD 408
>gi|291535589|emb|CBL08701.1| uncharacterized domain HDIG [Roseburia intestinalis M50/1]
Length = 446
Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats.
Identities = 94/436 (21%), Positives = 176/436 (40%), Gaps = 44/436 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ L ++ VGG VRD++++ + D DI T P++V IF++ I T
Sbjct: 9 VKFIIETLETHGYEAYAVGGCVRDTMLHRTPGDWDITTQAKPEQVKEIFAEKNIHTIDTG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + F++TT R D + R+ K FT D RRDFTINA+ + +
Sbjct: 69 IQHGTVTVMVEHEGFEVTTYRIDGEYEDARHPKNVQFTASLLEDLKRRDFTINAMAYNDK 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ID G+ DL I+ +G A R ED LR+LR RF A G +I+++ A +K
Sbjct: 129 NGLIDAFDGVGDLERGVIRCVGCAMERFSEDALRMLRAVRFAAQLGF-DIEAETKEAMVK 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ +S+ERI +E+ KL+ + +P I + G+ + + +
Sbjct: 188 LAPDIAKISAERIQTELVKLITSAHPGE-IRTAWETGLTAVFLPEFDRMMATPQNTKHHC 246
Query: 253 EQVFEWKI--------DSLLRFIVLISW----------------------QDKKSILSMA 282
V E + D +LR +L+ + + +
Sbjct: 247 YSVGEHTVAALEHIVGDKVLRLTMLLHDVAKPVCRTTDASGNDHFYGHPKEGSEMARKIL 306
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
++ + + + + LS +++ G + A + A +
Sbjct: 307 RRLKFDNDTTDKVCRLVCWHDDNPPLSEKNVRRAVSRIGVEQYPALFAVKRADILAQSEY 366
Query: 343 QDTCFI----------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
Q + ++L + G D++ G+ PGK++G L +
Sbjct: 367 QREEKLSYVDGYEALYREILEKNQCLTIRDLAVNGSDLIAAGMKPGKEIGETLKSLLELV 426
Query: 393 INSSFQLSQEDLHHLL 408
++ ++E L +
Sbjct: 427 LDDPELNNRELLLERI 442
>gi|254420680|ref|ZP_05034404.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Brevundimonas sp. BAL3]
gi|196186857|gb|EDX81833.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Brevundimonas sp. BAL3]
Length = 401
Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats.
Identities = 127/405 (31%), Positives = 185/405 (45%), Gaps = 23/405 (5%)
Query: 1 MV-SIVQHKWFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M S+ W +++ L + VGG VR+SL+ V DIDIAT + P+
Sbjct: 1 MTVSMRGQPWLEAKATRAVMAALQAAGGPDCARFVGGCVRNSLLGQPVDDIDIATRLRPE 60
Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
M K +PT + +GT+ + +K ++ITTLR D+ TDGR A V FT DW D+
Sbjct: 61 ETMTALQAAGLKAVPTGLEHGTVTGVSERKPYEITTLRRDVETDGRRAVVAFTEDWAEDA 120
Query: 118 LRRDFTINALYADQQGKVIDYVGGL-NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDF +NALYAD G V D GG D I F+G+A RI EDYLRILRFFRF A
Sbjct: 121 ARRDFRLNALYADAAGTVFDPTGGGLADAAKGRIVFVGEAETRIREDYLRILRFFRFQAW 180
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
YG D+ GL A K G+ LS+ER+ E+ KLL A++P + + M G+ ++
Sbjct: 181 YGRGQPDATGLAACAALKAGMAQLSAERVSKELMKLLAARDPRSTVRAMAETGVLGQVLP 240
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ Q ++L E + D +LR L+ D+ +++ +A L R L
Sbjct: 241 EAQPLNL--------FEAMCGLTGDPVLRLSALLPA-DEGAVVRIAGSLRLSNGTRDRLA 291
Query: 297 SFF-NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
+ ++ E + Y G +L +
Sbjct: 292 AAVAEGPVVATDMTEAEARAAIYRLGRDAFEDRL---------TRAEAAGGDGGALRRLA 342
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400
W P P+ G D+ + G+ PG + G +L + WI F
Sbjct: 343 AGWTPPKMPVGGRDLARLGLKPGPETGRVLKAFEAGWIADDFPSD 387
>gi|148992554|ref|ZP_01822222.1| polyA polymerase family protein [Streptococcus pneumoniae SP9-BS68]
gi|168488782|ref|ZP_02712981.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Streptococcus
pneumoniae SP195]
gi|237650239|ref|ZP_04524491.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae CCRI 1974]
gi|237820879|ref|ZP_04596724.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae CCRI 1974M2]
gi|147928571|gb|EDK79585.1| polyA polymerase family protein [Streptococcus pneumoniae SP9-BS68]
gi|183572650|gb|EDT93178.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Streptococcus
pneumoniae SP195]
Length = 394
Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats.
Identities = 97/399 (24%), Positives = 180/399 (45%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + GD ++K
Sbjct: 300 RDCYRFD------IDLLLQAENLRQAQGKEVNLQAITEKYQSLTIHDKKEIQINGDILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392
>gi|144897232|emb|CAM74096.1| Polynucleotide adenylyltransferase [Magnetospirillum
gryphiswaldense MSR-1]
Length = 413
Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats.
Identities = 123/398 (30%), Positives = 200/398 (50%), Gaps = 6/398 (1%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ W ++ ++ L + VGG VRDS++ +++DIDIAT PDRVM +
Sbjct: 14 LSPQAWMQAAETQAVIKALTADGAEVRFVGGCVRDSVLKRAIKDIDIATHDPPDRVMALL 73
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
+ +VIPT +++GT+ + K +++ITTLR D+ T GR+A+V FT DW AD+ RRDFT
Sbjct: 74 ERAHIRVIPTGLAHGTVTAVVGKAHYEITTLREDVETFGRHARVSFTDDWTADAARRDFT 133
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+NA++AD QG++ D GGL DL ++F+GD RI ED LR+LRFFRFFAHYG +++
Sbjct: 134 MNAMFADPQGRIYDPFGGLADLGAGHVRFVGDPFRRIEEDLLRLLRFFRFFAHYGRTSLE 193
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
S + A K L LS ER+ E+ +LL+A +P ++ M GI + + EI
Sbjct: 194 SQAMAACRKLAPRLVELSGERVAGELIRLLQAPDPALVLMVMKTNGILAHVLPEAVEIGR 253
Query: 244 DQLSQVIEAEQVFEWKIDS-LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
++ +E+ + I LR + + D I + ++ L ++S
Sbjct: 254 LKVLTWLESRAMVRDTIHPDPLRRLAAMLSADAAGIAVLGERLKLSAAQTGRILSIVCPQ 313
Query: 303 FN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY---NNLTHQDTCFILQVLSDIIHW 358
+ + + ++ G + + A H L +++ +L HW
Sbjct: 314 VDVRMDMDRRAARRALRRVGADTFRDLVLVAWAEHRSCSGLLDSRESRMWQDLLDQADHW 373
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
+ P+ G D + G+P G +G L + W
Sbjct: 374 QPVELPVRGADCLDLGVPRGPAIGQALARVE-AWCEGG 410
>gi|227889888|ref|ZP_04007693.1| tRNA CCA-pyrophosphorylase [Lactobacillus johnsonii ATCC 33200]
gi|227849332|gb|EEJ59418.1| tRNA CCA-pyrophosphorylase [Lactobacillus johnsonii ATCC 33200]
Length = 407
Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats.
Identities = 85/397 (21%), Positives = 162/397 (40%), Gaps = 16/397 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF K + T
Sbjct: 21 AALPVLKEINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFK----KTVDT 76
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D
Sbjct: 77 GIKHGTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMDV 136
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A
Sbjct: 137 DGNIIDHFDGLGDLEKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETEQAIS 195
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L +S ERI E K+ A A ++ E + + +
Sbjct: 196 DNHELLSKISVERIRDEFVKMGIALGSQKAFQ-IFLDTGLSEEVPGFR--GKKENLALYP 252
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+L ++++ I + + + + + +
Sbjct: 253 QLNFSPTNEANLWALMIILLKLPNDKIPHFMRMWKNSNAMERQVADIVAFFDLISSHAPN 312
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y G + +++ + + L + ++ + + G ++
Sbjct: 313 NY--DLYKAGLETIVSTIDLAHIL----GQPINGSALVDSYEALPIKNNRDLVVDGHFLL 366
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K GIP G +VG +L K+ + ++ + +
Sbjct: 367 KNGIPAGPRVGLLLEEIKKAVLEGVISNNEAAITEFI 403
>gi|221232267|ref|YP_002511420.1| CCA-adding enzyme [Streptococcus pneumoniae ATCC 700669]
gi|225854998|ref|YP_002736510.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae JJA]
gi|220674728|emb|CAR69301.1| CCA-adding enzyme [Streptococcus pneumoniae ATCC 700669]
gi|225723806|gb|ACO19659.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Streptococcus pneumoniae JJA]
Length = 394
Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats.
Identities = 95/399 (23%), Positives = 179/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L L + I + + K + G ++K
Sbjct: 300 RDCYRFD------LDLLLQAENLRQAQGKEVNPQVIKETYQSLTIHDKKEIQINGGILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392
>gi|163814964|ref|ZP_02206351.1| hypothetical protein COPEUT_01114 [Coprococcus eutactus ATCC 27759]
gi|158449647|gb|EDP26642.1| hypothetical protein COPEUT_01114 [Coprococcus eutactus ATCC 27759]
Length = 443
Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats.
Identities = 103/441 (23%), Positives = 171/441 (38%), Gaps = 50/441 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++ L ++ IVGG VRDS++ D DI T+ P++V IF + I
Sbjct: 7 EGANRVIEGLEAAGYEAYIVGGCVRDSILGRLPGDWDITTSARPEQVKEIFR----RTID 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ K+ +++TT R + R +V FT + D RRDFTINA+
Sbjct: 63 TGIEHGTVTVMMGKEGYEVTTYRIDGEYSDHRRPDQVEFTASLEEDLKRRDFTINAMAYS 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ID GG+ DL ++ I+ +G A R ED LRILR RF G
Sbjct: 123 HSKGIIDMFGGVQDLNDKVIRAVGVARDRFDEDALRILRAIRFAGQLGFDIERDTRKAMI 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ-- 248
I+A+ K +S+ERI E+ KLL + +P + Y GI I + ++ +
Sbjct: 183 IQAQYL-KNISAERIRVELTKLLVSDHPDKLLEA-YVTGITSYILPEFDKMMEQPQNNPY 240
Query: 249 ------VIEAEQVFEWKIDSLLRFIVLISWQDKKS----------------------ILS 280
V E V + D +R+ L+ K + S
Sbjct: 241 HRYNVGVHSIEAVKNIRPDVTMRWAALLHDVGKPATHTVDENGIDHFFDHPEKGVPIAES 300
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKT--LSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
+ ++ + + + I+KL G ++I A
Sbjct: 301 ILRRLKFDNNTIKDVCTLVRWHDYGMGSVPKKGSIRKLLGEVGKDFFPYIIEIKKADMVA 360
Query: 339 NLTHQDTCF------ILQVLSDI----IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
+ + + +I + + G D++K GI PG ++G IL
Sbjct: 361 QSDYNLEERQSQLAALEKKYEEIMASDDCVRIKDLKINGGDLIKMGIKPGPQMGEILQKL 420
Query: 389 KQEWINSSFQLSQEDLHHLLR 409
I + +E L ++
Sbjct: 421 LDMVIEDPEKNDREYLIEQVK 441
>gi|168483567|ref|ZP_02708519.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Streptococcus
pneumoniae CDC1873-00]
gi|172043170|gb|EDT51216.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Streptococcus
pneumoniae CDC1873-00]
gi|332200121|gb|EGJ14194.1| CCA-adding enzyme [Streptococcus pneumoniae GA47368]
Length = 394
Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats.
Identities = 96/399 (24%), Positives = 180/399 (45%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S ++L+++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQNKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + GD ++K
Sbjct: 300 RDCYRFD------IDLLLQAENLRQARGKEVNPQAITEKYQSLTIHDKKEIQINGDILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392
>gi|227513326|ref|ZP_03943375.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus
buchneri ATCC 11577]
gi|227524470|ref|ZP_03954519.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus
hilgardii ATCC 8290]
gi|227083199|gb|EEI18511.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus
buchneri ATCC 11577]
gi|227088340|gb|EEI23652.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus
hilgardii ATCC 8290]
Length = 405
Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats.
Identities = 101/397 (25%), Positives = 179/397 (45%), Gaps = 18/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + ++ VGG+VRD+++ + D+DIAT+ P V +F +T T
Sbjct: 18 ALPILRKIEAAGYEAYFVGGSVRDTILQRPIHDVDIATSAYPSEVKSLFKRTA----DTG 73
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ I+ +++TT R++ R KV F R K D RRDFTINAL +
Sbjct: 74 IEHGTVMILDHGTGYEVTTFRTESGYQDYRRPDKVTFVRSLKEDLKRRDFTINALALSEN 133
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
GK+ D GGLND+ + I+ +GD R ED LR++R RF + I+ L
Sbjct: 134 GKITDLFGGLNDMSKKIIRAVGDPEERFNEDALRMMRAVRFASQLDF-KIEQQTLTGIYD 192
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ LK ++ ERI SE K++ + N + M +++ + + +++ Q
Sbjct: 193 HSELLKKIAVERIHSEFVKMMLGVDAKNGLNLMIKSQLYQFVPDFSEHLTVLQKIVATHF 252
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ E ++ +L + ++ ++S K++ +I +I F K+ +
Sbjct: 253 DLDNEVQVWALFTSMFQF---NRDQVISFLKRWKTANKIINDVILTTELIFQIKSHKVGN 309
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ Y G + + + I +N T D+ +++ + K +TG D++K
Sbjct: 310 L--ELYKAGKQNVQNAVAII-----SNYTDFDSAKLIKAYDQLPITTKKQLNVTGGDLIK 362
Query: 373 YGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
GI PG K+G L ++ I +L
Sbjct: 363 RGILNPGPKLGETLEALEKAVILGKINNQDSELIAAA 399
>gi|116514260|ref|YP_813166.1| tRNA CCA-pyrophosphorylase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|122275008|sp|Q049Z4|CCA_LACDB RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|116093575|gb|ABJ58728.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
Length = 396
Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats.
Identities = 97/397 (24%), Positives = 167/397 (42%), Gaps = 16/397 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L L + ++ VGG VRD L+ + D+DIAT+ P+ V F+K+ I T
Sbjct: 12 QAMPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKETFAKS----IDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ITT R++ R KV F ++ D RRDFTINAL ++
Sbjct: 68 GILHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTINALAMNR 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
QG++ID GL DL+ R IK +G A R ED LR++R RF + +++ A I
Sbjct: 128 QGEIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQLSF-SLEEKTRQAII 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L +S ERI E KL K+ A + E + DQLS + +
Sbjct: 187 NNHELLSKISVERIREEFVKLALGKDSRQAFKD-FLATGLSEECPGL-AGKKDQLSVLTD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ + + I ++ I + + + +
Sbjct: 245 LKAGPDDEAVFW-SLIAVLINLPADKISPFMRAWKNSNAMNQQVRQIVAAFDLLSRGEES 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + G + + A LK+ L + +L + + + G ++
Sbjct: 304 DF--DLFEIGQENLEAALKLAGLL----GKPLSSQVLLDRYNRLPIKAAGELAIDGQWLI 357
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K GI P ++G +L + ++ + SQ + L
Sbjct: 358 KEGIKPSPELGQLLRKALEGVVSGQVENSQAAIAEFL 394
>gi|15901397|ref|NP_346001.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae TIGR4]
gi|116517000|ref|YP_816846.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae D39]
gi|149007531|ref|ZP_01831166.1| polyA polymerase family protein [Streptococcus pneumoniae
SP18-BS74]
gi|149007893|ref|ZP_01831480.1| polyA polymerase family protein [Streptococcus pneumoniae
SP18-BS74]
gi|149021832|ref|ZP_01835839.1| predicted S-transferase [Streptococcus pneumoniae SP23-BS72]
gi|14973044|gb|AAK75641.1| polyA polymerase family protein [Streptococcus pneumoniae TIGR4]
gi|116077576|gb|ABJ55296.1| polyA polymerase family protein [Streptococcus pneumoniae D39]
gi|147760620|gb|EDK67594.1| polyA polymerase family protein [Streptococcus pneumoniae
SP18-BS74]
gi|147760890|gb|EDK67860.1| polyA polymerase family protein [Streptococcus pneumoniae
SP18-BS74]
gi|147930068|gb|EDK81055.1| predicted S-transferase [Streptococcus pneumoniae SP23-BS72]
gi|332074311|gb|EGI84788.1| CCA-adding enzyme [Streptococcus pneumoniae GA17545]
Length = 394
Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats.
Identities = 96/399 (24%), Positives = 179/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + G ++K
Sbjct: 300 RDCYRFD------IDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEIQINGGILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392
>gi|114585219|ref|XP_001140761.1| PREDICTED: tRNA nucleotidyl transferase, CCA-adding, 1 isoform 1
[Pan troglodytes]
gi|114585221|ref|XP_001140902.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial isoform
3 [Pan troglodytes]
Length = 434
Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats.
Identities = 117/404 (28%), Positives = 199/404 (49%), Gaps = 13/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QDID A+T P ++ +F +
Sbjct: 40 LFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFASTATPTQMKEMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 160 LGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPET 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + +N ++H+ SL++
Sbjct: 220 LEAIAENAKGLAGISGERIWVELKKILVGNH-VNHLIHLIYDLDVAPYIGLPANASLEEF 278
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+V + F K +LL + + + + + + +E + + +
Sbjct: 279 DKVSKNVDGFSPKPMTLLASLFKVQDD----VTKLDLRLKIAKEEKNLGLFIVKN--RKD 332
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + Y D ++ ++ L +Q + L ++ W P FP++
Sbjct: 333 LIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCL---LKEMQQWSIPPFPVS 389
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 390 GHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433
>gi|110677804|ref|YP_680811.1| polyA polymerase family protein, putative [Roseobacter
denitrificans OCh 114]
gi|109453920|gb|ABG30125.1| polyA polymerase family protein, putative [Roseobacter
denitrificans OCh 114]
Length = 392
Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 26/405 (6%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
W HD+D + + L+ VGG VRD+L+ ++ D+D+AT P+ VMR+
Sbjct: 11 ADTAWLHDADALAVCDALSCAGGAVYFVGGCVRDALLGIARSDVDLATDQTPENVMRLAE 70
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ +PT + +GT+ ++ F++TT R D TDGR+A V F+ D + D+ RRDFT+
Sbjct: 71 AAGLRAVPTGLDHGTVTVVSGGTGFEVTTFRRDTSTDGRHAVVSFSTDIREDARRRDFTM 130
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NI 182
NALYA G+++D + G+ D NR ++FI D RI EDYLRILRFFRF A Y +
Sbjct: 131 NALYAASDGRLVDPLNGVQDCLNRRVRFIEDPQKRIREDYLRILRFFRFHAWYADPAAGF 190
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D D L A + GL LS+ERI +E+ KLL A +P ++ M G + +
Sbjct: 191 DPDALDAIAQNTAGLAQLSAERIGTEMMKLLRAPDPAPSVAAMRQTGCLARVLPGSDD-- 248
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
L+ V+ E D +LR L + + + ++++ F
Sbjct: 249 -RFLAPVVHLEGSMGHGPDPVLRLSALGGDMAEDVLRLSRAEARKLKQLQVF-------- 299
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ ++ Y + + A + +I +
Sbjct: 300 ----GFGPMSLAEITYRENADLARGAAILRAAFASQPVPASAQ-------DEISKGAQAE 348
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
FP+ D++ GK +G+ + +Q+WI S F L+++ L L
Sbjct: 349 FPIKASDLMPT--YQGKALGDRVRLLEQQWIASGFSLTRDALLAL 391
>gi|319946991|ref|ZP_08021225.1| polyA polymerase family protein [Streptococcus australis ATCC
700641]
gi|319747039|gb|EFV99298.1| polyA polymerase family protein [Streptococcus australis ATCC
700641]
Length = 406
Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats.
Identities = 93/407 (22%), Positives = 187/407 (45%), Gaps = 19/407 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + IL + + ++ VGG+VRD+++ + D+DIA++ P+ IF + I
Sbjct: 12 EALPILEKIRRAGYEAYFVGGSVRDAILGRPIHDVDIASSSYPEETKAIFE----RTIDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++ITT R++ + R + V F R + D RRDFT+N+ +
Sbjct: 68 GIEHGTVLVLENHQEYEITTFRTEDVYVDFRRPSAVNFVRSLEEDLKRRDFTVNSFALSE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+G++ID GL DL NR ++ +G A R ED LRI+R FRF A G +++ + A
Sbjct: 128 EGEIIDLFNGLEDLENRVLRAVGVATERFNEDALRIMRGFRFQASLGF-DLEEETFKAMA 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIV-HMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ +S ERI+ E++KLL A + + + L ++SL++L Q+
Sbjct: 187 DCAPLLEKISVERIFIELDKLLLAPYWRKGLEGVIASQSYQYLPLLQNSQLSLEKLFQLS 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + L+ D+ + + KK+ R+ + ++ S+
Sbjct: 247 MDYTFTSSEQ----AWAALLLTLDENKVSAFFKKWKTSRDFAKKVEQLVEIYRLREKASL 302
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y Y ++++ ++ A + D I ++ + K + G +
Sbjct: 303 NR--RDVYRYDRNLLLSAEELRQA----HGLPVDFQVIEELYDSLAIHDKHEIVVNGGML 356
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+K Y + PG +G +L + ++ + ++ + + L + +
Sbjct: 357 MKEYNLKPGPSLGQVLSAIEWAIVDGELENDKKAIGNFLSHYLEEMK 403
>gi|306829865|ref|ZP_07463052.1| tRNA adenylyltransferase [Streptococcus mitis ATCC 6249]
gi|304427876|gb|EFM30969.1| tRNA adenylyltransferase [Streptococcus mitis ATCC 6249]
Length = 399
Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats.
Identities = 98/399 (24%), Positives = 179/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IFS+T
Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFSRTA----DIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 129 GEIIDLFHGLKDLENQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ELEQETFEAMKT 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S ++L ++ +
Sbjct: 188 LTPLLEKISVERTFVEFDKLLRAPFWRVGLSSMIESQA--YDYLPDMADSREKLQKLFDL 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + K S K + R+ + ++ + +
Sbjct: 246 EADFTFE-SSEQAWADLLWALEIKDAQSFLKHWKTSRQFAKQVQDLLTILALREEGELSK 304
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L L + I + + K + G ++K
Sbjct: 305 RDCYRFD------LDSLLQAERLRQAQGKEVNPQLITETYQSLTIHDKKEIQINGGILIK 358
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G+IL + ++ + ++ +H LR+
Sbjct: 359 EYGYQPGPDLGDILTEIEFAIVDGDLENDRDAIHTYLRE 397
>gi|149011794|ref|ZP_01832990.1| predicted S-transferase [Streptococcus pneumoniae SP19-BS75]
gi|147764225|gb|EDK71157.1| predicted S-transferase [Streptococcus pneumoniae SP19-BS75]
Length = 394
Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats.
Identities = 97/399 (24%), Positives = 180/399 (45%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + GD ++K
Sbjct: 300 RDCYRFD------IDLLLQAENLRQAQGKEVNLQAITKKYQSLTIHDKKEIQINGDILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392
>gi|239827472|ref|YP_002950096.1| tRNA CCA-pyrophosphorylase [Geobacillus sp. WCH70]
gi|259585843|sp|C5D3B5|CCA_GEOSW RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|239807765|gb|ACS24830.1| Polynucleotide adenylyltransferase region [Geobacillus sp. WCH70]
Length = 404
Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats.
Identities = 104/407 (25%), Positives = 176/407 (43%), Gaps = 17/407 (4%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
++ + + I+ L + ++ VGGAVRD L+N + DIDIAT+ LPD VM++F
Sbjct: 1 MKEPFQK---ALGIIQTLQQHGYEAYFVGGAVRDLLLNREIGDIDIATSALPDEVMQLFP 57
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDF 122
K I +GT+ ++ +++TT R+ + R V F R D RRDF
Sbjct: 58 ----KTIDIGSQHGTVVVVHNGISYEVTTFRTESEYEDYRRPGAVTFVRSLYEDLQRRDF 113
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
T+NA+ D +GK+ID GG + NR I +GD R ED LR++R RF G ++
Sbjct: 114 TMNAIAMDAEGKLIDPFGGQEAIANRIICTVGDPKARFSEDALRMMRAIRFVGQLGF-SL 172
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D + A I+ L +S ER+ E KLLE A+ + G+F + + + +
Sbjct: 173 DEETKQAIIENAALLAHISVERMTMEFEKLLEGPFASRALSLLVETGLFLYLPMLRDKEN 232
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
Q A + R+ L S + + LP + +
Sbjct: 233 ELQ----AAARYNWRLLDSRGQRWGFLCYILCIDSAADFLRAWKLPNRLIKEVEMALRIL 288
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ S ++ + +G + IA I N+ + + ++ + K
Sbjct: 289 QTIPSSSDWTKER-LFEFGLEHAIAAETIRSVASGENV-EEHRKKLNELFMSLPIKTKKE 346
Query: 363 FPLTGDDVVKYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++G+D++K+ P G V IL ++ I+ +E +H L
Sbjct: 347 LAVSGNDIMKWFGKPGGPWVKEILTLIERAVIHGEVDNHKERIHEWL 393
>gi|291540833|emb|CBL13944.1| uncharacterized domain HDIG [Roseburia intestinalis XB6B4]
Length = 446
Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats.
Identities = 94/436 (21%), Positives = 176/436 (40%), Gaps = 44/436 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ L ++ VGG VRD++++ + D DI T P++V IF++ I T
Sbjct: 9 VKFIIETLETHGYEAYAVGGCVRDTMLHRTPGDWDITTQAKPEQVKEIFAEKNIHTIDTG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + F++TT R D + R+ K FT D RRDFTINA+ + +
Sbjct: 69 IQHGTVTVMVEHEGFEVTTYRIDGEYEDARHPKNVQFTASLLEDLKRRDFTINAMAYNDK 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ID G+ DL I+ +G A R ED LR+LR RF A G +I+++ A +K
Sbjct: 129 NGLIDAFDGVGDLERGVIRCVGCAMERFSEDALRMLRAVRFAAQLGF-DIEAETKEAMVK 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ +S+ERI +E+ KL+ + +P I + G+ + + +
Sbjct: 188 LAPDIAKISAERIQTELVKLITSAHPGE-IRTAWETGLTAVFLPEFDRMMATPQNTKHHC 246
Query: 253 EQVFEWKI--------DSLLRFIVLISW----------------------QDKKSILSMA 282
V E + D +LR +L+ + + +
Sbjct: 247 YSVGEHTVAALEHIVGDKVLRLTMLLHDVAKPVCRTTDASGNDHFYGHPKEGSEMARKIL 306
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
++ + + + + LS +++ G + A + A +
Sbjct: 307 RRLKFDNDTTDKVCRLVCWHDDNPPLSEKNVRRAVSRIGVEQYPALFAVKRADILAQSEY 366
Query: 343 QDTCFI----------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
Q + ++L + G D++ G+ PGK++G L +
Sbjct: 367 QREEKLSYVDGYEALYREILEKNQCLTIRDLAVNGSDLIAAGMKPGKEIGETLKSILELV 426
Query: 393 INSSFQLSQEDLHHLL 408
++ ++E L +
Sbjct: 427 LDDPELNNRELLLERI 442
>gi|103487591|ref|YP_617152.1| polynucleotide adenylyltransferase region [Sphingopyxis alaskensis
RB2256]
gi|98977668|gb|ABF53819.1| Polynucleotide adenylyltransferase region [Sphingopyxis alaskensis
RB2256]
Length = 398
Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats.
Identities = 128/400 (32%), Positives = 187/400 (46%), Gaps = 20/400 (5%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M + W L I++ L +VGGAVRD+L+ L V D+D+AT ++P V
Sbjct: 1 MTRLPDAAWRDRPGLRRIVAALADDGGAVKVVGGAVRDTLLGLDVTDVDLATPLVPGEVT 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
R KVIPT I++GT+ I + +ITTLR D+ TDGR A V F DW+ D+ RR
Sbjct: 61 RRLEAAGIKVIPTGIAHGTVTAIASGDHHEITTLRRDVATDGRRATVAFADDWREDAARR 120
Query: 121 DFTINALYADQQGKVIDYVGGL-NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALYAD + ID G DL + FIGDA RI ED+LRILRF+RF A +G
Sbjct: 121 DFTINALYADPRTGAIDDWFGGLADLDRGRVAFIGDAASRIAEDHLRILRFYRFAARFGR 180
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
++D A + A++ LK LS ERI E+ K+L +P + M+ GI + ++
Sbjct: 181 GDLDPASHAAVVAARQSLKSLSRERIADELAKILALPDPRAIVAQMHADGILAVLLPELD 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
L ++ E V + + LR + + D +A + L R L +
Sbjct: 241 AGFAAALDRLFANEAVAG-AVPAALRRLAALLPADVAIAEQVASRLRLSTRQRKHLAALG 299
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ +++L Y G + + L + W+
Sbjct: 300 GHRHDVA----RPVRQLAYAIGIEAARDVHLLAGD--------------PAALRTLSDWQ 341
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399
P+ P+ G D+V GI G +V IL + W+ F
Sbjct: 342 VPMLPVKGGDIVARGIAAGPEVARILKAVEAAWVAEDFPD 381
>gi|322411575|gb|EFY02483.1| tRNA CCA-pyrophosphorylase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 402
Score = 203 bits (515), Expect = 6e-50, Method: Composition-based stats.
Identities = 105/403 (26%), Positives = 186/403 (46%), Gaps = 18/403 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF+ + +
Sbjct: 13 ALPILNKIKEAGYEAYFVGGSVRDVLLGRPIHDVDIATSSYPEETKAIFN----RTVDVG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL DL + ++ +G+A R ED LRI+R FRF A +I+ A
Sbjct: 129 GQVIDKFTGLQDLEQKRLRAVGEAADRFEEDALRIMRGFRFAASLDF-DIEFATFEAMKS 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQLSQVIE 251
L +S ER + E +KLL A + I+ M + L QEI+L QL+ +
Sbjct: 188 HSPLLAKISVERSFIEFDKLLMAPHWRKGILAMIACQAYDYLPGLGQQEIALKQLTVSLA 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + I+ +S Q+ K L K + + L++ ++ + +
Sbjct: 248 DGFTFSDHHQAWAYLIISLSIQNPKPFLKAWKTSNDFQRCVAQLVTLYHIRQERPFEKL- 306
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y YG K+ ++ +L D +I Q+ + K + G ++
Sbjct: 307 ----DIYQYGKKLT----RLIESLRQAMGQDVDMAYIEQLDQALAIHDKHDIVVNGSHLI 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
K +G+ PG ++G +L + + + + +R+ +A
Sbjct: 359 KNFGLKPGPELGVMLERIELAIVEGHLANELDAIEAFVREELA 401
>gi|116494870|ref|YP_806604.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus casei
ATCC 334]
gi|191638377|ref|YP_001987543.1| CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA
adenylyl-/cytidylyl-transferase) (tRNA
CCA-pyrophosphorylase) (tRNA-NT) [Lactobacillus casei
BL23]
gi|122263712|sp|Q039G0|CCA_LACC3 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|226702068|sp|B3WE84|CCA_LACCB RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|116105020|gb|ABJ70162.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus casei
ATCC 334]
gi|190712679|emb|CAQ66685.1| CCA-adding enzyme (EC 2.7.7.25) (tRNA nucleotidyltransferase) (tRNA
adenylyl-/cytidylyl-transferase) (tRNA
CCA-pyrophosphorylase) (tRNA-NT) [Lactobacillus casei
BL23]
gi|327382405|gb|AEA53881.1| Poly A polymerase [Lactobacillus casei LC2W]
Length = 398
Score = 203 bits (515), Expect = 6e-50, Method: Composition-based stats.
Identities = 98/406 (24%), Positives = 171/406 (42%), Gaps = 22/406 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I IL + ++ VGG+VRD+++ L + D+DIA++ P + RIF +T
Sbjct: 11 KAAIPILKKIEAAGYEAYFVGGSVRDAILGLPIHDVDIASSAYPAEIKRIFKRTA----D 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ +++TT R++ R V F R D RRDFTINAL
Sbjct: 67 TGIEHGTVMVLDHGTGYEVTTFRTESRYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVR 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G +ID GL DL++ ++ +G+ H R ED LR++R RF + G I+ A
Sbjct: 127 HDGTIIDLFDGLKDLQHHQLRAVGNPHERFHEDALRMMRAVRFESQLGF-GIEPATKAAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQLSQV 249
K L +S ER+ +E N+LL + + +F + E +L Q SQ+
Sbjct: 186 ADNAKLLVHISVERVAAEFNRLLTGIDRRAGLQDFIETRLFAYAPKMAAHETALTQFSQL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ ++ SL + + + L M K + E+ + +
Sbjct: 246 ------PDTQLTSLASGWAALIFLLRTQPLVMLKAWKQSNELITLVTQTVKLLQVMPNPT 299
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ Y G+ + ++ L D + + + + K LTG D
Sbjct: 300 AWD----LYQAGEAAVTTASEVQKLLT----PDFDQQQLAEAYAALPIHSKKELALTGAD 351
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
++K G+ PG +G L +Q + + + L + ++
Sbjct: 352 LIKAGVRPGPAMGKALNQIEQRVVAGALPNELKKLLPIATEMSQDR 397
>gi|15903456|ref|NP_359006.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae R6]
gi|111658462|ref|ZP_01409135.1| hypothetical protein SpneT_02000362 [Streptococcus pneumoniae
TIGR4]
gi|73619881|sp|Q97PP9|CCA_STRPN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|73619884|sp|Q8CWQ3|CCA_STRR6 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|15459066|gb|AAL00217.1| tRNA nucleotidyltransferase [Streptococcus pneumoniae R6]
Length = 399
Score = 203 bits (515), Expect = 6e-50, Method: Composition-based stats.
Identities = 96/399 (24%), Positives = 179/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 129 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 246 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 304
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + G ++K
Sbjct: 305 RDCYRFD------IDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEIQINGGILIK 358
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 359 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 397
>gi|303260182|ref|ZP_07346154.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae SP-BS293]
gi|303262572|ref|ZP_07348513.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae SP14-BS292]
gi|303264974|ref|ZP_07350889.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS397]
gi|303266437|ref|ZP_07352325.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS457]
gi|303269019|ref|ZP_07354801.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS458]
gi|301802274|emb|CBW35026.1| CCA-adding enzyme [Streptococcus pneumoniae INV200]
gi|302636289|gb|EFL66783.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae SP14-BS292]
gi|302638679|gb|EFL69142.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae SP-BS293]
gi|302641409|gb|EFL71774.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS458]
gi|302644015|gb|EFL74274.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS457]
gi|302645493|gb|EFL75725.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS397]
Length = 394
Score = 203 bits (515), Expect = 6e-50, Method: Composition-based stats.
Identities = 96/399 (24%), Positives = 179/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + G ++K
Sbjct: 300 RDCYRFD------IDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKDIQINGGILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392
>gi|307127766|ref|YP_003879797.1| CCA-adding enzyme [Streptococcus pneumoniae 670-6B]
gi|306484828|gb|ADM91697.1| CCA-adding enzyme [Streptococcus pneumoniae 670-6B]
Length = 394
Score = 203 bits (515), Expect = 6e-50, Method: Composition-based stats.
Identities = 97/399 (24%), Positives = 180/399 (45%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWATLLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + GD ++K
Sbjct: 300 RDCYRFD------IDLLLQAENLRQARGKEVNPQAITEKYQSLTIHDKKEIQINGDILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392
>gi|313887921|ref|ZP_07821600.1| putative tRNA adenylyltransferase [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312846087|gb|EFR33469.1| putative tRNA adenylyltransferase [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 440
Score = 203 bits (515), Expect = 6e-50, Method: Composition-based stats.
Identities = 94/438 (21%), Positives = 184/438 (42%), Gaps = 43/438 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+++ IL+ L + ++ IVGG+VRD LM + D DI T+ P+ + ++F YK +
Sbjct: 3 KNVLFILNKLRENGFEAYIVGGSVRDKLMGIEPHDYDITTSARPEEIKKVFQA--YKTVL 60
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYAD 130
+GT+ I+ +++TT R D +F+++ D RRDFTINA+ D
Sbjct: 61 IGEDFGTVGILLDNTLYEVTTFRIDGAYINNRKPEKVIFSKNLTEDLKRRDFTINAMAMD 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G + D G +D++N+ I+ +GD + RI ED LR++R RF + I+ + A
Sbjct: 121 GDGNLYDPFNGQDDIKNKIIRAVGDPNERIREDALRMMRAIRFAGRFRFF-IEEELFDAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
LK ++ ERI+ E +K++ ++P + ++ M G+ IF +++
Sbjct: 180 SLNASLLKKIAPERIFDEFSKMITGESPSHYLLLMEETGMLDVIFPELKRTVGFVQFSPY 239
Query: 251 EAEQVFEW--------KIDSLLRFIVLISW----------------------QDKKSILS 280
+ +F+ K D LR L +
Sbjct: 240 HDKTLFDHLICVMDNVKPDLSLRLAGLFHDISKVDTLSIGEDGRGHFYGHEVLGADKVEE 299
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQK-TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ K++ LP + + + ++ +++ G ++ + +A
Sbjct: 300 ILKRYRLPNKTIEKVKILILDHMKVHAEMTDKALRRQIKRVGRDNILDLYDLLIADCMCT 359
Query: 340 LTHQDTCFIL-------QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
+D FI+ ++L + + + G+D+ G GK +G IL ++
Sbjct: 360 RADRDASFIINRKNRVKELLDEKEMKTEKFLEINGNDIKALGFSQGKIIGRILKDLEEMV 419
Query: 393 INSSFQLSQEDLHHLLRK 410
++ + + L + K
Sbjct: 420 LDDPEKNEKTYLIDYIDK 437
>gi|291528708|emb|CBK94294.1| uncharacterized domain HDIG [Eubacterium rectale M104/1]
Length = 446
Score = 203 bits (515), Expect = 6e-50, Method: Composition-based stats.
Identities = 100/443 (22%), Positives = 181/443 (40%), Gaps = 48/443 (10%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ I+ L + ++ VGG VRDSL+ + QD DI T+ P +V IF I T
Sbjct: 8 NVNFIIDTLYEHGFEAYAVGGCVRDSLLGRTPQDWDITTSAKPAQVKAIFDH----TIDT 63
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ +++TT R D + R+ K FT + K D RRDFTINA+ +
Sbjct: 64 GIQHGTVTVMLEHVGYEVTTYRIDGEYEDARHPKEVTFTSNLKLDLERRDFTINAMAYNH 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ ++D G+ DL+ I+ +G AH R ED LR+ R RF A G +I++ A
Sbjct: 124 RAGLVDEFDGIGDLKAHVIRCVGCAHDRFSEDALRMFRAVRFAAQLGF-DIEAQTKAAIK 182
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L +S+ERI E+ KLL + +P + +Y G+ + +
Sbjct: 183 ELAPALSKVSAERIQVELVKLLTSDHP-QMMRDLYELGLTAVFMPEFDVMMQTPQHNKHH 241
Query: 252 AEQVFEWKI--------DSLLRFIVLISW----------------------QDKKSILSM 281
V E + D +LR +L+ +
Sbjct: 242 MYSVGEHTLHTLEHVRADKILRLTMLLHDVAKPVCITTDEEGQNHFKKHPVVGADMTRKI 301
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
++ + ++ ++ +++ G ++ ++ A
Sbjct: 302 LRRLKFDNRTTDCCCKLVKEHDDRPAITERNVRRAMSRIGTELFPLLFEVKRADTLGQSM 361
Query: 342 HQDTCFI----------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
++ + ++L+D K + G D++K G+ PG K+G+IL ++
Sbjct: 362 YKRAEKLEYIAEYERVYRKILADHQCVSKKEMKINGSDLIKMGVEPGPKLGDILDRLYEQ 421
Query: 392 WINSSFQLSQEDLHHLLRKLIAS 414
++ + L L K+I S
Sbjct: 422 VLDDPSLNEAQKLKELANKIITS 444
>gi|258508389|ref|YP_003171140.1| tRNA nucleotidyltransferase, CCA-adding enzyme [Lactobacillus
rhamnosus GG]
gi|257148316|emb|CAR87289.1| tRNA nucleotidyltransferase, CCA-adding enzyme [Lactobacillus
rhamnosus GG]
gi|259649703|dbj|BAI41865.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus
rhamnosus GG]
Length = 398
Score = 203 bits (515), Expect = 6e-50, Method: Composition-based stats.
Identities = 96/402 (23%), Positives = 169/402 (42%), Gaps = 22/402 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I IL + ++ VGG+VRD+L+ L + D+DIA++ P+ + RIF + +
Sbjct: 11 KAAIPILKKIEAAGYEAYFVGGSVRDALLGLPIHDVDIASSAYPEEIKRIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ +++TT R++ R V F R D RRDFTINAL
Sbjct: 67 TGIEHGTVMVLDHGTGYEVTTFRTESAYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVR 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G +ID GL DL+NR ++ +GD H R ED LR++R RF + G I++ A
Sbjct: 127 HDGTIIDLFDGLTDLKNRQLRAVGDPHERFHEDALRMMRAVRFESQLGFH-IEATTKAAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQV 249
LK +S ERI +E N+LL + + + L + +L Q S++
Sbjct: 186 AANAPLLKHISVERIAAEFNRLLVGIDRRAGMQDFLDTHLFAYAPKLAPHQAALQQFSEL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ L F++ ++ S + ++ + T +
Sbjct: 246 PNQAFTSIASGWTALIFMLKVAP------ESFLPAWKQSNDLMGLVDQAVTLLRKMPTPT 299
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ Y G + ++ + + + + + K LTG D
Sbjct: 300 AWD----LYSAGSAAVAVVSEVAALMDHQFV----PASLTTAYEALPIHSKKTLALTGRD 351
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+++ G+ PG +G IL + ++ S + L ++
Sbjct: 352 LIQAGVRPGPAMGKILHQIEYRVVDGSLPNDSKKLLAAAIEM 393
>gi|76787734|ref|YP_329982.1| tRNA CCA-pyrophosphorylase [Streptococcus agalactiae A909]
gi|76562791|gb|ABA45375.1| polyA polymerase [Streptococcus agalactiae A909]
Length = 397
Score = 203 bits (515), Expect = 6e-50, Method: Composition-based stats.
Identities = 97/402 (24%), Positives = 185/402 (46%), Gaps = 18/402 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF + +
Sbjct: 8 ALPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFK----RTVDVG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ + R ++V F R + D RRDFT+NA ++
Sbjct: 64 IEHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNED 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K
Sbjct: 124 GEVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLNF-DIETTTFEAMKK 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNA-IVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ER + E +KLL A + + + L +E+ L ++
Sbjct: 183 HASLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSHAFNYLPCLKNRELQLSAFLSQLD 242
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ +FE + LI + + + KK+ + + + ++ + +
Sbjct: 243 KDFLFETSEQAW---ASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIREQMGLT 299
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + Y YG + +K + D I Q+ S++ + + G ++
Sbjct: 300 K--EHLYRYGKTI----IKQAEGIRKARGLMVDFEKIEQLDSELAIHDRHEIVVNGGTLI 353
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K GI PG ++G+I+ + + +E + H +++ +
Sbjct: 354 KKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFVKQYL 395
>gi|182684511|ref|YP_001836258.1| polyA polymerase family protein [Streptococcus pneumoniae CGSP14]
gi|226702090|sp|B2IR74|CCA_STRPS RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|182629845|gb|ACB90793.1| polyA polymerase family protein [Streptococcus pneumoniae CGSP14]
Length = 399
Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats.
Identities = 96/399 (24%), Positives = 179/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 129 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 246 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 304
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + G ++K
Sbjct: 305 RDCYRFD------IDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKDIQINGGILIK 358
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 359 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 397
>gi|194397214|ref|YP_002038188.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae G54]
gi|226702089|sp|B5E6J9|CCA_STRP4 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|194356881|gb|ACF55329.1| poly(A) polymerase family protein [Streptococcus pneumoniae G54]
Length = 399
Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats.
Identities = 96/399 (24%), Positives = 179/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLHNPIHDVDIATSSYPEETKQIFPRTA----DIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 129 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 188 LTPLLENISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 246 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 304
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + G ++K
Sbjct: 305 RDCYRFD------IDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEIQINGGILIK 358
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 359 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 397
>gi|116627321|ref|YP_819940.1| tRNA CCA-pyrophosphorylase [Streptococcus thermophilus LMD-9]
gi|122268076|sp|Q03M28|CCA_STRTD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|116100598|gb|ABJ65744.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus
thermophilus LMD-9]
Length = 402
Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats.
Identities = 95/401 (23%), Positives = 173/401 (43%), Gaps = 16/401 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + ++ VGG+VRD+L+N + D+DIA++ P+ +IF + +
Sbjct: 13 ALPVLEKIKAAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFE----RTVDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ +++TT R++ + R + V F R + D RRDFT+NA ++
Sbjct: 69 IEHGTVLVLENGGEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNEN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+VID GL DL NR ++ +G A R ED LRI+R RF A +I+ A
Sbjct: 129 AEVIDKFNGLADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASLDF-DIEEKTFEAMTS 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + I + ++ + D QE + + S V +
Sbjct: 188 HAFLLEKISIERSFIEFDKLLLAPHWKKGIKALLATKAYQYL-PDFQETAEEWQSFVADY 246
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ F + S + + + S KK+ + + S + + +
Sbjct: 247 AEDFRFT-SSEQAWAATLLALKHDNPRSFLKKWKTSVNFQKTVQSLIEIFRFRMEREVTK 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ Y YG LK L D I ++ ++ K + G ++K
Sbjct: 306 --QDVYHYGK----DLLKEAETLRQAQRLDVDYERIAELDGQLLIHDKHEIVVNGGKLMK 359
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
G PG +G L + ++ +E + ++ +
Sbjct: 360 ELGFKPGPDLGRTLKAIENAIVDGKLANDEESIMAFVQAMK 400
>gi|55820512|ref|YP_138954.1| tRNA CCA-pyrophosphorylase [Streptococcus thermophilus LMG 18311]
gi|55822400|ref|YP_140841.1| tRNA CCA-pyrophosphorylase [Streptococcus thermophilus CNRZ1066]
gi|73619886|sp|Q5M153|CCA_STRT1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|73619887|sp|Q5M5P1|CCA_STRT2 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|55736497|gb|AAV60139.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus
thermophilus LMG 18311]
gi|55738385|gb|AAV62026.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus
thermophilus CNRZ1066]
Length = 402
Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats.
Identities = 96/401 (23%), Positives = 173/401 (43%), Gaps = 16/401 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + ++ VGG+VRD+L+N + D+DIA++ P+ +IF + +
Sbjct: 13 ALPILEKIKAAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFE----RTVDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ +++TT R++ + R + V F R + D RRDFT+NA ++
Sbjct: 69 IEHGTVLVLENGGEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNEN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+VID GL DL NR ++ +G A R ED LRI+R RF A +I+ A
Sbjct: 129 AEVIDKFNGLADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASLDF-DIEEKTFEAMTS 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + I + ++ + D QE + + S V +
Sbjct: 188 HAFLLEKISIERSFIEFDKLLLAPHWKKGIKALLATKAYQYL-PDFQETAEEWQSFVADY 246
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ F + S + + + S KK+ + + S + + +
Sbjct: 247 AEDFRFT-SSEQAWAATLLALKHDNPRSFLKKWKTSVNFQKTVQSLIEIFRFRMEREVTK 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ Y YG LK L D I ++ ++ K + G ++K
Sbjct: 306 --QDVYHYGK----DLLKEAETLRQAQRLDVDYERIAELDGQLLIHDKHEIVVNGGKLMK 359
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
G PG +G L + ++ +E + ++ +
Sbjct: 360 ELGFKPGPDLGRTLRAIENAIVDGELANDEESIMAFVQAMK 400
>gi|77409475|ref|ZP_00786167.1| polyA polymerase family protein [Streptococcus agalactiae COH1]
gi|77171918|gb|EAO75095.1| polyA polymerase family protein [Streptococcus agalactiae COH1]
Length = 402
Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats.
Identities = 97/402 (24%), Positives = 185/402 (46%), Gaps = 18/402 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF + +
Sbjct: 13 ALPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFK----RTVDVG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ + R ++V F R + D RRDFT+NA ++
Sbjct: 69 IEHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K
Sbjct: 129 GEVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLNF-DIETTTFEAMKK 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNA-IVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ER + E +KLL A + + + L +E+ L ++
Sbjct: 188 HAPLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSHAFNYLPCLKNRELQLSAFLSQLD 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ +FE + LI + + + KK+ + + + ++ + +
Sbjct: 248 KDFLFETSEQAW---ASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIREQMGLT 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + Y YG + +K + D I Q+ S++ + + G ++
Sbjct: 305 K--EHLYRYGKTI----IKQAEGIRKARGLMVDFEKIEQLDSELAIHDRHEIVVNGGTLI 358
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K GI PG ++G+I+ + + +E + H +++ +
Sbjct: 359 KKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFVKQYL 400
>gi|22537488|ref|NP_688339.1| tRNA CCA-pyrophosphorylase [Streptococcus agalactiae 2603V/R]
gi|25011453|ref|NP_735848.1| tRNA CCA-pyrophosphorylase [Streptococcus agalactiae NEM316]
gi|77406286|ref|ZP_00783352.1| polyA polymerase family protein [Streptococcus agalactiae H36B]
gi|77411183|ref|ZP_00787535.1| polyA polymerase family protein [Streptococcus agalactiae CJB111]
gi|73619865|sp|Q8E4J0|CCA_STRA3 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|73619866|sp|Q8DYY1|CCA_STRA5 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|22534367|gb|AAN00212.1|AE014253_10 polyA polymerase family protein [Streptococcus agalactiae 2603V/R]
gi|24412991|emb|CAD47070.1| unknown [Streptococcus agalactiae NEM316]
gi|77162801|gb|EAO73760.1| polyA polymerase family protein [Streptococcus agalactiae CJB111]
gi|77175098|gb|EAO77901.1| polyA polymerase family protein [Streptococcus agalactiae H36B]
Length = 402
Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats.
Identities = 97/402 (24%), Positives = 185/402 (46%), Gaps = 18/402 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF + +
Sbjct: 13 ALPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFK----RTVDVG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ + R ++V F R + D RRDFT+NA ++
Sbjct: 69 IEHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K
Sbjct: 129 GEVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLNF-DIETTTFEAMKK 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNA-IVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ER + E +KLL A + + + L +E+ L ++
Sbjct: 188 HASLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSHAFNYLPCLKNRELQLSAFLSQLD 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ +FE + LI + + + KK+ + + + ++ + +
Sbjct: 248 KDFLFETSEQAW---ASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIREQMGLT 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + Y YG + +K + D I Q+ S++ + + G ++
Sbjct: 305 K--EHLYRYGKTI----IKQAEGIRKARGLMVDFEKIEQLDSELAIHDRHEIVVNGGTLI 358
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K GI PG ++G+I+ + + +E + H +++ +
Sbjct: 359 KKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFVKQYL 400
>gi|225861389|ref|YP_002742898.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae Taiwan19F-14]
gi|298230539|ref|ZP_06964220.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255205|ref|ZP_06978791.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|225726386|gb|ACO22237.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Streptococcus pneumoniae Taiwan19F-14]
gi|327389745|gb|EGE88090.1| CCA-adding enzyme [Streptococcus pneumoniae GA04375]
Length = 394
Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats.
Identities = 96/399 (24%), Positives = 180/399 (45%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S+ K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSLLKSWKTSRQFAKQVQDLLIILALRENGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + G ++K
Sbjct: 300 RDCYRFD------IDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEIQINGGILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392
>gi|90961683|ref|YP_535599.1| tRNA CCA-pyrophosphorylase [Lactobacillus salivarius UCC118]
gi|122449084|sp|Q1WU19|CCA_LACS1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|90820877|gb|ABD99516.1| Poly(A) polymerase / tRNA nucleotidyltransferase [Lactobacillus
salivarius UCC118]
Length = 404
Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats.
Identities = 102/407 (25%), Positives = 183/407 (44%), Gaps = 18/407 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL + + ++ VGG+VRD+L+ L + D+DIA++ P+ + +IFS K +
Sbjct: 11 KKALPILEKIREAGFEAYFVGGSVRDTLLGLPIHDVDIASSAYPEEIKQIFS----KTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++ ++ITT R++ R KV F R + D RRD TINAL D
Sbjct: 67 TGVEHGTVMVLDHGTGYEITTFRTESTYQDYRRPDKVEFVRSLEEDLKRRDLTINALAMD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+GK+ID GL DL+N I+ +G+ R ED LR++R RF + ++ D A
Sbjct: 127 DKGKIIDLFDGLKDLKNGIIRAVGNPEERFHEDALRMMRAVRFGSQLDF-KVELDTFNAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAI-VHMYNGGIFKEIFLDVQEISLDQLSQV 249
K L+ ++ ERI E KLL KNP + + + L + +
Sbjct: 186 KKNSHLLEKIAIERIHVEWVKLLLGKNPKQGLQEFLDTELYKYCPLFADKYAELKSILEF 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ + E + +LL + + D ++L + I ++I+ C K
Sbjct: 246 SDFKLNTEEECWTLLSDVFKLKDTDISNLLR---SWKSSNNIIKYVIAASLCVQKIKDSK 302
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + +Y G ++++ +I + D + + + + G D
Sbjct: 303 L--DIETYYQNGIEIILTANQIAKIRGFGM----DDNELKNNYDKLPIKSRKEMKINGKD 356
Query: 370 V-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ + G+ PGK +G IL ++E + + +E L +KL+
Sbjct: 357 LVQEAGVKPGKIMGEILNKLEKEIVFGNIINDKEILIENAKKLLEEK 403
>gi|325686007|gb|EGD28067.1| poly A polymerase [Lactobacillus delbrueckii subsp. lactis DSM
20072]
Length = 409
Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats.
Identities = 101/398 (25%), Positives = 173/398 (43%), Gaps = 18/398 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L L + ++ VGG VRD L+ + D+DIAT+ P+ V F+K+ I T
Sbjct: 25 QAMPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKETFAKS----IDT 80
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ITT R++ R KV F ++ D RRDFTINAL ++
Sbjct: 81 GIQHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTINALAMNR 140
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
QG++ID GL DL+ R IK +G A R ED LR++R RF + +++ A I
Sbjct: 141 QGEIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQLSF-SLEEKTRQAII 199
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L +S ERI E KL K+ A + G + L ++ L + +
Sbjct: 200 NNHELLSKISVERIREEFVKLALGKDSRQAFKDFLATGLSEECPGLAGKKDQLSVFTDLK 259
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + L +++ DK S A K S + I ++ S
Sbjct: 260 AGPD--DEAVFWSLIAVLINLPADKISPFMRAWKNSNAMNQQVRQIVAAFDLLSRGEESD 317
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ + G + + A LK+ L + +L + + + G +
Sbjct: 318 FD----LFEIGQENLEAALKLAGLL----GKPLSSQVLLDRYNRLPIKAAGELAIDGQWL 369
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+K GI P ++G +L + ++ + +Q + L
Sbjct: 370 IKEGIKPSPELGQLLRKALEGVVSGQVENNQAAIAEFL 407
>gi|148988607|ref|ZP_01820040.1| predicted S-transferase [Streptococcus pneumoniae SP6-BS73]
gi|148990379|ref|ZP_01821551.1| predicted S-transferase [Streptococcus pneumoniae SP6-BS73]
gi|168491552|ref|ZP_02715695.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Streptococcus
pneumoniae CDC0288-04]
gi|168493459|ref|ZP_02717602.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Streptococcus
pneumoniae CDC3059-06]
gi|147924334|gb|EDK75426.1| predicted S-transferase [Streptococcus pneumoniae SP6-BS73]
gi|147925808|gb|EDK76883.1| predicted S-transferase [Streptococcus pneumoniae SP6-BS73]
gi|183574130|gb|EDT94658.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Streptococcus
pneumoniae CDC0288-04]
gi|183576258|gb|EDT96786.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Streptococcus
pneumoniae CDC3059-06]
Length = 394
Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats.
Identities = 96/399 (24%), Positives = 180/399 (45%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S ++L+++ +
Sbjct: 183 LTPLLENISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQNKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + GD ++K
Sbjct: 300 RDCYRFD------IDLLLQAENLRQARGKEVNPQAITEKYQSLTIHDKKEIQINGDILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392
>gi|76798774|ref|ZP_00780990.1| polynucleotide adenylyltransferase [Streptococcus agalactiae
18RS21]
gi|76585881|gb|EAO62423.1| polynucleotide adenylyltransferase [Streptococcus agalactiae
18RS21]
Length = 402
Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats.
Identities = 97/402 (24%), Positives = 185/402 (46%), Gaps = 18/402 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF + +
Sbjct: 13 ALPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFK----RTVDVG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ + R ++V F R + D RRDFT+NA ++
Sbjct: 69 IEHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K
Sbjct: 129 GEVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLNF-DIETTTFEAMKK 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNA-IVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ER + E +KLL A + + + L +E+ L ++
Sbjct: 188 HASLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSHAFNYLPCLKNRELQLSAFLSQLD 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ +FE + LI + + + KK+ + + + ++ + +
Sbjct: 248 KDFLFETSEQAW---ASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIREQMGLT 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + Y YG + +K + D I Q+ S++ + + G ++
Sbjct: 305 K--EHLYRYGKTI----IKQAEGIRKARGLMVDFEKIEQLDSELAIHDRHEIVVNGGTLI 358
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K GI PG ++G+I+ + + +E + H +++ +
Sbjct: 359 KKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFIKQYL 400
>gi|319745265|gb|EFV97583.1| polyA polymerase family protein [Streptococcus agalactiae ATCC
13813]
Length = 403
Score = 202 bits (514), Expect = 8e-50, Method: Composition-based stats.
Identities = 97/402 (24%), Positives = 185/402 (46%), Gaps = 18/402 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF + +
Sbjct: 14 ALPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFK----RTVDVG 69
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ + R ++V F R + D RRDFT+NA ++
Sbjct: 70 IEHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNED 129
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K
Sbjct: 130 GEVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLNF-DIETTTFEAMKK 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNA-IVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ER + E +KLL A + + + L +E+ L ++
Sbjct: 189 HAPLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSYAFNYLPCLKNRELQLSAFLSQLD 248
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ +FE + LI + + + KK+ + + + ++ + +
Sbjct: 249 KDFLFETSEQAW---ASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIREQMGLT 305
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + Y YG + +K + D I Q+ S++ + + G ++
Sbjct: 306 K--EHLYRYGKTI----IKQAEGIRKARGLMVDFEKIEQLDSELAIHDRHEIVVNGGTLI 359
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K GI PG ++G+I+ + + +E + H +++ +
Sbjct: 360 KKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFVKQYL 401
>gi|298503294|ref|YP_003725234.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae TCH8431/19A]
gi|298238889|gb|ADI70020.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae TCH8431/19A]
Length = 399
Score = 202 bits (514), Expect = 8e-50, Method: Composition-based stats.
Identities = 96/399 (24%), Positives = 180/399 (45%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 129 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S+ K + R+ + ++ + +
Sbjct: 246 ETDFTFE-SSEQAWAALLWALEIENAQSLLKSWKTSRQFAKQVQDLLIILALRENGELSK 304
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + G ++K
Sbjct: 305 RDCYRFD------IDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEIQINGGILIK 358
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 359 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 397
>gi|168486818|ref|ZP_02711326.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Streptococcus
pneumoniae CDC1087-00]
gi|225857182|ref|YP_002738693.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae P1031]
gi|183570208|gb|EDT90736.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Streptococcus
pneumoniae CDC1087-00]
gi|225726321|gb|ACO22173.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Streptococcus pneumoniae P1031]
Length = 394
Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats.
Identities = 96/399 (24%), Positives = 179/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 183 LTPLLENISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + G ++K
Sbjct: 300 RDCYRFD------IDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEIQINGGILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392
>gi|254460336|ref|ZP_05073752.1| tRNA-nucleotidyltransferase 1 [Rhodobacterales bacterium HTCC2083]
gi|206676925|gb|EDZ41412.1| tRNA-nucleotidyltransferase 1 [Rhodobacteraceae bacterium HTCC2083]
Length = 381
Score = 202 bits (513), Expect = 9e-50, Method: Composition-based stats.
Identities = 134/405 (33%), Positives = 191/405 (47%), Gaps = 27/405 (6%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
VQ W D+ + L ++ VGG VR++L+ + V DIDIAT P+ V+
Sbjct: 2 KVQGAWIEDAATQVVCDALTSQGFQTLFVGGCVRNALLGVDVSDIDIATDATPEDVVECA 61
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
K IPT I +GTI ++ ++TT RSD TDGR+AKV F++ D+ RRDFT
Sbjct: 62 RLAGLKSIPTGIDHGTITVVSAGIPHELTTFRSDTETDGRHAKVRFSKSILEDAARRDFT 121
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181
+NA+YAD G V+D + G+ DL R ++FIGDA RI EDYLR LRFFRF A YG+
Sbjct: 122 MNAIYADPAGFVVDPLNGMPDLNARHVRFIGDAEARIREDYLRSLRFFRFTAWYGDPGLG 181
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
ID DGL A GL+ LS ER+ SE+ KL+ A NP A+ M + G+ + +
Sbjct: 182 IDPDGLAAVAANLDGLEGLSRERVGSELKKLMTAANPAMAVAAMRSSGVLHAVLPSADDR 241
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+L L + EQ D + R L + AKK L +
Sbjct: 242 ALGPLIHL---EQRLNIAPDPIRRLSALTTSD-------AAKKLRLSKLESKRWAVL--- 288
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + L YL+G L + A + + + + +
Sbjct: 289 --RDEVETTKPAAHLGYLHGSNTAKDVLLLRSAFLEMPINE-------EAIQESNKGETA 339
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
LFP+ D+ G +G L +Q WI S F LS+++L
Sbjct: 340 LFPIKAKDLPHL---SGCALGEALTTLEQRWIASGFTLSRDELLA 381
>gi|225859313|ref|YP_002740823.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae 70585]
gi|225720864|gb|ACO16718.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Streptococcus pneumoniae 70585]
Length = 394
Score = 202 bits (513), Expect = 9e-50, Method: Composition-based stats.
Identities = 96/399 (24%), Positives = 179/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + + + K + GD ++K
Sbjct: 300 RDCYRFD------IDLLLQAENLRQAQGKEVNPQATTEKYQSLTIHDKKEIQINGDILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392
>gi|238922936|ref|YP_002936449.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Eubacterium
rectale ATCC 33656]
gi|238874608|gb|ACR74315.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Eubacterium
rectale ATCC 33656]
Length = 446
Score = 202 bits (513), Expect = 9e-50, Method: Composition-based stats.
Identities = 100/443 (22%), Positives = 180/443 (40%), Gaps = 48/443 (10%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ I+ L + ++ VGG VRDSL+ QD DI T+ P +V IF I T
Sbjct: 8 NVNFIIDTLYEHGFEAYAVGGCVRDSLLGRVPQDWDITTSAKPAQVKAIFDH----TIDT 63
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ +++TT R D + R+ K FT + K D RRDFTINA+ +
Sbjct: 64 GIQHGTVTVMLEHVGYEVTTYRIDGEYEDARHPKEVTFTSNLKLDLERRDFTINAMAYNH 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ ++D G+ DL+ I+ +G AH R ED LR+ R RF A G +I++ A
Sbjct: 124 RAGLVDEFDGIADLKAHVIRCVGCAHDRFSEDALRMFRAVRFAAQLGF-DIEAQTKAAIK 182
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L +S+ERI E+ KLL + +P + +Y G+ + +
Sbjct: 183 ELAPALSKVSAERIQVELVKLLTSDHP-QMMRDLYELGLTAVFMPEFDVMMQTPQHNKHH 241
Query: 252 AEQVFEWKI--------DSLLRFIVLISW----------------------QDKKSILSM 281
V E + D +LR +L+ +
Sbjct: 242 MYSVGEHTLHTLEHVRADKILRLTMLLHDVAKPVCITTDEEGQNHFKKHPVVGADMTRKI 301
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
++ + ++ ++ +++ G ++ ++ A
Sbjct: 302 LRRLKFDNRTTDCCCKLVKEHDDRPAITERNVRRAISRIGTELFPLLFEVKRADTLGQSM 361
Query: 342 HQDTCFI----------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
++ + ++L+D K + G D++K G+ PG K+G+IL ++
Sbjct: 362 YKRAEKLEYIAEYESVYRKILADHQCVSKKEMKINGSDLIKMGVEPGPKLGDILDRLYEQ 421
Query: 392 WINSSFQLSQEDLHHLLRKLIAS 414
++ + L L K+I S
Sbjct: 422 VLDDPSLNEAQKLKELANKIITS 444
>gi|307274965|ref|ZP_07556128.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX2134]
gi|306508413|gb|EFM77520.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX2134]
Length = 406
Score = 202 bits (513), Expect = 9e-50, Method: Composition-based stats.
Identities = 90/401 (22%), Positives = 168/401 (41%), Gaps = 16/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + K + +
Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFKIEEKTLAAIA 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
KI + LL + L Q L +L +
Sbjct: 187 EFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPKLREQGAGLFRLMDLP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + +LL + + + I S K + L ++ + + LS
Sbjct: 247 ARQIETEAEAWTLLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQLVRG--LRFRLSN 301
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G++ + ++ +++ + ++ +TG D+
Sbjct: 302 NWQPMMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIHQRHELAITGKDL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PGK +G ++ +Q + + + QE L +K
Sbjct: 358 LAVLEETPGKWLGELIAEIEQHVVKGNLENKQEVLLSFAKK 398
>gi|229545827|ref|ZP_04434552.1| tRNA adenylyltransferase [Enterococcus faecalis TX1322]
gi|229309055|gb|EEN75042.1| tRNA adenylyltransferase [Enterococcus faecalis TX1322]
Length = 424
Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats.
Identities = 91/401 (22%), Positives = 168/401 (41%), Gaps = 16/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 29 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 84
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 85 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 144
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + K + +
Sbjct: 145 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFKIEEKTLAAIA 204
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
KI + LL + L Q L +L +
Sbjct: 205 EFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPKLREQGAGLFRLMDLP 264
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + +LL + + + I S K + L ++ + + LS
Sbjct: 265 ARQIETEAEAWTLLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQLVRG--LRFRLSN 319
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G++ + ++ +++ + ++ +TG D+
Sbjct: 320 DWQPMMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIHQRHELTITGKDL 375
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PGK +G ++ +Q + S + QE L +K
Sbjct: 376 LAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 416
>gi|77414516|ref|ZP_00790663.1| polyA polymerase family protein [Streptococcus agalactiae 515]
gi|77159439|gb|EAO70603.1| polyA polymerase family protein [Streptococcus agalactiae 515]
Length = 402
Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats.
Identities = 97/402 (24%), Positives = 185/402 (46%), Gaps = 18/402 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF + +
Sbjct: 13 ALPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFK----RTVDVG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ + R ++V F R + D RRDFT+NA ++
Sbjct: 69 IEHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K
Sbjct: 129 GEVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLNF-DIETTTFEAMKK 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNA-IVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ER + E +KLL A + + + L +E+ L ++
Sbjct: 188 HASLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSHAFNYLPCLKNRELQLSAFLSQLD 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ +FE + LI + + + KK+ + + + ++ + +
Sbjct: 248 KDFLFETSEQAW---ASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIREQMGLA 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + Y YG + +K + D I Q+ S++ + + G ++
Sbjct: 305 K--EHLYRYGKTI----IKQAEGIRKARGLMVDFEKIEQLDSELAIHDRHEIVVNGGTLI 358
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K GI PG ++G+I+ + + +E + H +++ +
Sbjct: 359 KKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFVKQYL 400
>gi|322389621|ref|ZP_08063169.1| polyA polymerase family protein [Streptococcus parasanguinis ATCC
903]
gi|321143620|gb|EFX39050.1| polyA polymerase family protein [Streptococcus parasanguinis ATCC
903]
Length = 403
Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats.
Identities = 89/406 (21%), Positives = 184/406 (45%), Gaps = 17/406 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + IL + ++ VGG+VRD+L++ + D+DIA++ P+ IF + +
Sbjct: 12 EALPILEKIKAAGFEAYFVGGSVRDALLDRPIHDVDIASSSYPEETKAIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++ITT R++ + R + V F R + D RRDFT+NA ++
Sbjct: 68 GIEHGTVLVLENGQEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+G+++D GL DL N+ ++ +G + R ED LRI+R FRF A G ++ A
Sbjct: 128 KGEIVDLFHGLEDLENKVLRAVGLPNERFNEDALRIMRGFRFQASLGF-ELEEATFDAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L+ +S ER + E +KLL + + M G + + ++++ + + ++ +
Sbjct: 187 ECAPLLEKISVERTFIEFDKLLLSPYWRQGLEAMLASGAYHYL-PEMKDRK-EAIERLFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E + + + L+ + + I KK+ R+ + ++ S+
Sbjct: 245 IELEYTFSTSE-QAWAALVLALEIQDIPKFFKKWKTSRDFAKTVEQIVEILKLREKGSLD 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y ++ +L+ AL + I +V + K + G ++
Sbjct: 304 KRACYKYEKRLLLLAEELREAYALSV------NYLAIERVYDSLTIHDKHEVVVNGGTLI 357
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
K YG PG +G +L + ++ +E + +++ +
Sbjct: 358 KDYGFQPGPALGEMLTKIEYAIVDGELANEKEAIIAYIQQAKEEEK 403
>gi|163732986|ref|ZP_02140430.1| polyA polymerase family protein, putative [Roseobacter litoralis
Och 149]
gi|161393521|gb|EDQ17846.1| polyA polymerase family protein, putative [Roseobacter litoralis
Och 149]
Length = 392
Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats.
Identities = 125/405 (30%), Positives = 188/405 (46%), Gaps = 26/405 (6%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
W HD+D + + L+ VGG VRD+L+ ++ D+D+AT P+ VMR+ +
Sbjct: 11 ADTAWLHDADAQAVCAALSSEGGAVYFVGGCVRDALLGIAGSDVDLATDQTPENVMRLAN 70
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ +PT + +GT+ I+ F++TT RSD TDGRYA V F+ D + D+ RRDFT+
Sbjct: 71 AAGLRAVPTGLDHGTVTIVSGGTGFEVTTFRSDTSTDGRYAVVCFSTDIREDARRRDFTM 130
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--I 182
NALYA G+++D + G+ D NR ++FI D RI EDYLRILRFFRF A Y + +
Sbjct: 131 NALYAAPAGQLVDPLHGMQDCLNRRVRFIEDPQKRIREDYLRILRFFRFHAWYADPDAGF 190
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D D L A + L LS+ERI +E+ KLL A +P ++ M G + +
Sbjct: 191 DPDALDAIAQNTARLAQLSAERIGAEMMKLLRAPDPAPSVAVMRQTGCLGIVLPGSDD-- 248
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
L V+ E D +LR L + S L R L
Sbjct: 249 -QFLGPVVHLEAAMGHGPDPVLRLSALGGDTAEDS-------LRLSRAEARKLKQLQAFG 300
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
F +L+ Y + + A + L +I
Sbjct: 301 FGPMSLAEIA-----YRENADLARGAAILRAAFASQPVPAS-------TLDEISKGADAK 348
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
FP+ D++ GK +G+ + +Q+WI S F L+++ L L
Sbjct: 349 FPVKAADLMPT--YQGKALGDRVRLLEQQWIASGFSLTRDALLAL 391
>gi|116492835|ref|YP_804570.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pediococcus
pentosaceus ATCC 25745]
gi|122265701|sp|Q03F94|CCA_PEDPA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|116102985|gb|ABJ68128.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pediococcus
pentosaceus ATCC 25745]
Length = 396
Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats.
Identities = 95/402 (23%), Positives = 174/402 (43%), Gaps = 18/402 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
D +L + + VGG+VRD+L+N + D+DIA++ P + IF K +
Sbjct: 6 EDARAVLQKIEDAGFDAFFVGGSVRDTLLNKPIHDVDIASSAYPAEIKHIFK----KTVD 61
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ +I + +++TT R++ R +V F R K D +RRDFTINA
Sbjct: 62 TGIEHGTVMVIHDGEGYEVTTFRTESGYQDFRRPDQVTFVRSLKEDLMRRDFTINAFALK 121
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ VID GL+DL ++ I+ +GD H R ED LR++R RF + I++ L A
Sbjct: 122 EDRTVIDIFDGLSDLEHKIIRAVGDPHERFHEDALRMMRAVRFASQLDF-KIEAKTLKAI 180
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L +S ERI E K++ P + M + + ++ S +L Q+
Sbjct: 181 EENNMLLGKISVERILVEFEKMMLGSKPNRGLEDMLTTKLNEY-CPGFKDRS-KELDQLT 238
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + + I + ++ K++ ++ + + K +
Sbjct: 239 KYPLKLLENPEQVWTMIAWSLKLTPQEVMPFLKQWKTSNDLIKNVSATLQVLSMDK--ND 296
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ + G+ ++ +++ L N L ++ +TG ++
Sbjct: 297 QNERLALFNAGEANVVNAIRVAQILGMNR------EAWLDTYQNLQIKDTHEMAITGKEL 350
Query: 371 VKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
++ G I PG ++G +L K IN + L + + KL
Sbjct: 351 IQKGIIKPGPQMGQVLNRLKLMVINDELKNESLALLNAVNKL 392
>gi|229552186|ref|ZP_04440911.1| tRNA adenylyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|258539600|ref|YP_003174099.1| tRNA nucleotidyltransferase CCA-adding enzyme [Lactobacillus
rhamnosus Lc 705]
gi|229314488|gb|EEN80461.1| tRNA adenylyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|257151276|emb|CAR90248.1| tRNA nucleotidyltransferase, CCA-adding enzyme [Lactobacillus
rhamnosus Lc 705]
Length = 398
Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats.
Identities = 97/402 (24%), Positives = 169/402 (42%), Gaps = 22/402 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I IL + K+ VGG+VRD+L+ L + D+DIA++ P+ + RIF + +
Sbjct: 11 KAAIPILKKIEAAGYKAYFVGGSVRDALLGLPIHDVDIASSAYPEEIKRIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ +++TT R++ R V F R D RRDFTINAL
Sbjct: 67 TGIEHGTVMVLDHGTGYEVTTFRTESAYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVR 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G +ID GL DL+NR ++ +GD H R ED LR++R RF + G I++ A
Sbjct: 127 HDGTIIDLFDGLTDLKNRQLRAVGDPHERFHEDALRMMRAVRFESQLGFH-IEATTKAAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQV 249
LK +S ERI +E N+LL + + + L + +L Q S++
Sbjct: 186 AANAPLLKHISVERIAAEFNRLLVGIDRRAGMQDFLDTHLFAYAPKLAPHQAALQQFSEL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ L F++ ++ S + ++ + T +
Sbjct: 246 PNQAFTSIASGWTALIFMLKVAP------ESFLPAWKQSNDLMGLVDQAVTLLRKMPTPT 299
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ Y G + ++ + + + + + K LTG D
Sbjct: 300 AWD----LYSAGSAAVAVVSEVAALMDHQFV----PASLTTAYEALPIHSKKTLALTGRD 351
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+++ G+ PG +G IL + ++ S + L ++
Sbjct: 352 LIQAGVRPGPAMGKILHQIEYRVVDGSLPNDSKKLLAAAIEM 393
>gi|312277828|gb|ADQ62485.1| PolyA polymerase family protein [Streptococcus thermophilus ND03]
Length = 402
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 93/401 (23%), Positives = 175/401 (43%), Gaps = 16/401 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + ++ VGG+VRD+L+N + D+DIA++ P+ +IF + +
Sbjct: 13 ALPILEKIKAAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFE----RTVDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ +++TT R++ + R + V F R + D RRDFT+NA ++
Sbjct: 69 IEHGTVLVLENGGEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNEN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+VID GL DL NR ++ +G A R ED LRI+R RF A +I+ A
Sbjct: 129 AEVIDKFNGLADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASLDF-DIEEKTFEAMTS 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + + + ++ + D QE + + S V +
Sbjct: 188 HAFLLEKISIERSFIEFDKLLLAPHWKKGVKALLATKAYQYL-PDFQETAEEWQSFVADY 246
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ F + S + + + S KK+ + + S + + +
Sbjct: 247 AEDFRFT-SSEQAWAATLLALKHDNPRSFLKKWKTSVNFQKTVQSLIEIFRFRMEREVTK 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ Y YG +++ + A D I ++ ++ K + G ++K
Sbjct: 306 --QDVYHYGKELLKEAETLRQA----QRLDVDYERIAELDGQLLIHDKHEIVVNGGKLMK 359
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
G PG +G L + ++ +E + ++ +
Sbjct: 360 ELGFKPGPDLGRTLRAIENAIVDGELANDEESIMAFVQAMK 400
>gi|293382998|ref|ZP_06628916.1| poly A polymerase [Enterococcus faecalis R712]
gi|293389513|ref|ZP_06633970.1| poly A polymerase [Enterococcus faecalis S613]
gi|312907531|ref|ZP_07766522.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis DAPTO 512]
gi|312910149|ref|ZP_07768996.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis DAPTO 516]
gi|291079663|gb|EFE17027.1| poly A polymerase [Enterococcus faecalis R712]
gi|291081130|gb|EFE18093.1| poly A polymerase [Enterococcus faecalis S613]
gi|310626559|gb|EFQ09842.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis DAPTO 512]
gi|311289422|gb|EFQ67978.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis DAPTO 516]
Length = 406
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 91/401 (22%), Positives = 168/401 (41%), Gaps = 16/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + K + +
Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFKIEEKTLAAIA 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
KI + LL + L Q L +L +
Sbjct: 187 EFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPELREQGAGLFRLMDLP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + +LL + + + I S K + L ++ + + LS
Sbjct: 247 ARQIETEAEAWTLLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQLVRG--LRFRLSN 301
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G++ + ++ +++ + ++ +TG D+
Sbjct: 302 DWQPMMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIHQRHELAITGKDL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PGK +G ++ +Q + S + QE L +K
Sbjct: 358 LAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 398
>gi|317120984|ref|YP_004100987.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermaerobacter marianensis DSM 12885]
gi|315590964|gb|ADU50260.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermaerobacter marianensis DSM 12885]
Length = 610
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 97/434 (22%), Positives = 176/434 (40%), Gaps = 51/434 (11%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L+ L + + +VGG VRD LM +D D+AT+ P+ V RIF + IPT
Sbjct: 153 PVREVLTRLGEHGHAAYLVGGCVRDLLMARPPKDWDVATSARPEEVRRIFP----RTIPT 208
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQ 131
I +GT+ + R ++TT R + R+ FTRD +AD RRD TINA+ D
Sbjct: 209 GIEHGTVTVRARGLSVEVTTFRQESGYSDFRHPDRVEFTRDLRADLERRDLTINAMALDA 268
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+G++ D +GGL DL ++ +GD R ED LR+LR RF A +G ++ A
Sbjct: 269 EGRLHDPLGGLADLEAGVVRAVGDPDERFREDALRLLRVVRFAARFGY-RVEPRTEAALA 327
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ ++ +S ERI E++ LL + P + + G+ + I+ ++ E + V
Sbjct: 328 RCAPLIRHVSWERIREEMSGLLVSPRPAWGLELLRTSGLLEPIWPELLE-GVGVAQNVHH 386
Query: 252 AEQVFEWKIDSLL------------------------------RFIVLISWQDKKSILSM 281
A V+E + + R M
Sbjct: 387 AYTVWEHNLLACQYTPPVLRLRLAGLLHDVGKPRTVSVDARGQRHFYHHEVVGADMARQM 446
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKT---LSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
++ + + + ++ I++L G + + + +A
Sbjct: 447 LRRLKFDNDTVRHVAHLVRHHLALHHYPGMTDAAIRRLIQRIGFDYLEDLIILRVADRAA 506
Query: 339 NLTHQDTC---------FILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHC 388
+ T + + ++L + + G DV+ G+ PG +G IL
Sbjct: 507 SGTKRAPISRGAYRLLTRMEKILEQDAAFSLHDLAIDGHDVMAATGLGPGPAIGWILQKL 566
Query: 389 KQEWINSSFQLSQE 402
++ ++ + ++
Sbjct: 567 LEDVLDEPGRNRRQ 580
>gi|294675746|ref|YP_003576361.1| CCA-adding enzyme [Rhodobacter capsulatus SB 1003]
gi|294474566|gb|ADE83954.1| CCA-adding enzyme [Rhodobacter capsulatus SB 1003]
Length = 384
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 123/405 (30%), Positives = 183/405 (45%), Gaps = 29/405 (7%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ W + +L++L+ G ++ +VGG VR++ + V DIDIAT P+RVM +
Sbjct: 2 KITGDWLTAGHVQKVLAMLSDGGHQALLVGGCVRNAALFQPVSDIDIATDAPPERVMALA 61
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
K +PT I +GT+ ++ ++TT R D+ T GR+A V F+ D + D+ RRDFT
Sbjct: 62 KAAGLKPVPTGIEHGTVTVVADHVGHEVTTFRRDVETFGRHAIVAFSTDLREDAARRDFT 121
Query: 124 INALYADQQGKVIDY-VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NALYA G VID GL DL R ++F+GD RI EDYLRILRFFRF A YG+ +
Sbjct: 122 MNALYARADGTVIDPLGEGLADLSARRLRFVGDPAQRITEDYLRILRFFRFTAWYGDPDQ 181
Query: 183 DSDGL--VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
D A G++ LS ERI E+ KLL A +P A+ M G+ ++ +
Sbjct: 182 GMDAEGLAACAAFSAGIETLSRERIGHEMRKLLSAPDPAPAVAAMAASGVLAQVLPGAEA 241
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
L L + LR + + +D A + L + L
Sbjct: 242 RFLAPLVHLE------GSVPADPLRRLACLGGED------PADRLRLSKAEARRLERLRE 289
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ + + Y YG + L I A + +
Sbjct: 290 ALGDPGSDAELG-----YRYGAETGRDALLIRCASLGQEIPESSRNRV-------AFGAA 337
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
FP+T D++ G +G L ++ WI S F LS+E L
Sbjct: 338 QRFPVTAADLMPKH--QGPALGAKLKELERRWIASGFSLSREALL 380
>gi|256619060|ref|ZP_05475906.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus
faecalis ATCC 4200]
gi|257089882|ref|ZP_05584243.1| poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus
faecalis CH188]
gi|312903304|ref|ZP_07762484.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0635]
gi|256598587|gb|EEU17763.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus
faecalis ATCC 4200]
gi|256998694|gb|EEU85214.1| poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus
faecalis CH188]
gi|310633180|gb|EFQ16463.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0635]
gi|315577710|gb|EFU89901.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0630]
Length = 406
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 91/401 (22%), Positives = 168/401 (41%), Gaps = 16/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + K + +
Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFKIEEKTLAAIA 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
KI + LL + L Q L +L +
Sbjct: 187 EFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPKLREQGAGLFRLMDLP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + +LL + + + I S K + L ++ + + LS
Sbjct: 247 ARQIETEVEAWTLLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQLVRG--LRFRLSN 301
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G++ + ++ +++ + ++ +TG D+
Sbjct: 302 DWQPMMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIHQRHELAITGKDL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PGK +G ++ +Q + S + QE L +K
Sbjct: 358 LAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 398
>gi|29376121|ref|NP_815275.1| poly A polymerase [Enterococcus faecalis V583]
gi|227518748|ref|ZP_03948797.1| tRNA adenylyltransferase [Enterococcus faecalis TX0104]
gi|256958977|ref|ZP_05563148.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus
faecalis DS5]
gi|256965128|ref|ZP_05569299.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis HIP11704]
gi|257079008|ref|ZP_05573369.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis JH1]
gi|257082553|ref|ZP_05576914.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus
faecalis E1Sol]
gi|257085186|ref|ZP_05579547.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus
faecalis Fly1]
gi|257419293|ref|ZP_05596287.1| poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus
faecalis T11]
gi|257422622|ref|ZP_05599612.1| poly(A) polymerase [Enterococcus faecalis X98]
gi|294781648|ref|ZP_06746983.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis PC1.1]
gi|307271021|ref|ZP_07552304.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX4248]
gi|307273228|ref|ZP_07554474.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0855]
gi|312900757|ref|ZP_07760054.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0470]
gi|312951490|ref|ZP_07770386.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0102]
gi|73619770|sp|Q834S5|CCA_ENTFA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|29343583|gb|AAO81345.1| poly A polymerase [Enterococcus faecalis V583]
gi|227073801|gb|EEI11764.1| tRNA adenylyltransferase [Enterococcus faecalis TX0104]
gi|256949473|gb|EEU66105.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus
faecalis DS5]
gi|256955624|gb|EEU72256.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis HIP11704]
gi|256987038|gb|EEU74340.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis JH1]
gi|256990583|gb|EEU77885.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus
faecalis E1Sol]
gi|256993216|gb|EEU80518.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus
faecalis Fly1]
gi|257161121|gb|EEU91081.1| poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus
faecalis T11]
gi|257164446|gb|EEU94406.1| poly(A) polymerase [Enterococcus faecalis X98]
gi|294451200|gb|EFG19667.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis PC1.1]
gi|295112981|emb|CBL31618.1| tRNA nucleotidyltransferase/poly(A) polymerase [Enterococcus sp.
7L76]
gi|306510213|gb|EFM79237.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0855]
gi|306512519|gb|EFM81168.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX4248]
gi|310630456|gb|EFQ13739.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0102]
gi|311292238|gb|EFQ70794.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0470]
gi|315033966|gb|EFT45898.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0017]
gi|315036975|gb|EFT48907.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0027]
gi|315147261|gb|EFT91277.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX4244]
gi|315150540|gb|EFT94556.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0012]
gi|315152487|gb|EFT96503.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0031]
gi|315155765|gb|EFT99781.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0043]
gi|315158068|gb|EFU02085.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0312]
gi|315169038|gb|EFU13055.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX1341]
gi|315575870|gb|EFU88061.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0309B]
gi|315580522|gb|EFU92713.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0309A]
gi|323480720|gb|ADX80159.1| tRNA adenylyltransferase [Enterococcus faecalis 62]
Length = 406
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 91/401 (22%), Positives = 168/401 (41%), Gaps = 16/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + K + +
Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFKIEEKTLAAIA 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
KI + LL + L Q L +L +
Sbjct: 187 EFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPKLREQGAGLFRLMDLP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + +LL + + + I S K + L ++ + + LS
Sbjct: 247 ARQIETEAEAWTLLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQLVRG--LRFRLSN 301
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G++ + ++ +++ + ++ +TG D+
Sbjct: 302 DWQPMMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIHQRHELAITGKDL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PGK +G ++ +Q + S + QE L +K
Sbjct: 358 LAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 398
>gi|327183480|gb|AEA31927.1| tRNA CCA-pyrophosphorylase [Lactobacillus amylovorus GRL 1118]
Length = 399
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 89/399 (22%), Positives = 162/399 (40%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F K+ I T
Sbjct: 14 AMPVLRTLEDAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKELFDKS----IDTG 69
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D
Sbjct: 70 IKHGTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDMH 129
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G ++D G+ DL+N I+ +G+ R ED LR++R RF + E ++ A
Sbjct: 130 GDIVDLFNGIEDLKNHIIRAVGNPEKRFHEDALRMMRAVRFMSQL-EFKLEEKTEQAIKD 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ LK +S ERI E K+ A + L QV
Sbjct: 189 NHELLKKISVERIREEFVKMGLGPFSRQAFQI---FLDTQLSEDVPDFAGKKDLLQVYPQ 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ SL I+++ ++I + + + + +
Sbjct: 246 LKFSPTMETSLWAVIIILLKVPNENIGKFMRDWKNSNAMTEKVEQIIKMFDLIADHVPTD 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ G+ ++I + + L + ++ + + G ++K
Sbjct: 306 Y--ELFEAGEDIIINTIDVADIL----GQPVSSEALVDRYLALPIKTPSELAVDGRFLIK 359
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
G+ PG ++G L +++ + + S+E + L L
Sbjct: 360 RGMRPGAQLGRTLNQIRKKVVACEIENSEEAIEQYLDDL 398
>gi|291523824|emb|CBK89411.1| uncharacterized domain HDIG [Eubacterium rectale DSM 17629]
Length = 446
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 100/443 (22%), Positives = 181/443 (40%), Gaps = 48/443 (10%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ I+ L + ++ VGG VRDSL+ + QD DI T+ P +V IF I T
Sbjct: 8 NVNFIIDTLYEHGFEAYAVGGCVRDSLLGRTPQDWDITTSAKPAQVKVIFDH----TIDT 63
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ +++TT R D + R+ K FT + K D RRDFTINA+ +
Sbjct: 64 GIQHGTVTVMLEHVGYEVTTYRIDGEYEDARHPKEVTFTSNLKLDLERRDFTINAMAYNH 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ ++D G+ DL+ I+ +G AH R ED LR+ R RF A G +I++ A
Sbjct: 124 RAGLVDEFDGIADLKAHVIRCVGCAHDRFSEDALRMFRAVRFAAQLGF-DIEAQTKAAIK 182
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L +S+ERI E+ KLL + +P + +Y G+ + +
Sbjct: 183 ELAPALSKVSAERIQVELVKLLTSDHP-QMMRDLYELGLTAVFMPEFDVMMQTPQHNKHH 241
Query: 252 AEQVFEWKI--------DSLLRFIVLISW----------------------QDKKSILSM 281
V E + D +LR +L+ +
Sbjct: 242 MYSVGEHTLHTLEHVRADKILRLTMLLHDVAKPVCITTDEEGQNHFKKHPVVGADMTRKI 301
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
++ + ++ ++ +++ G ++ ++ A
Sbjct: 302 LRRLKFDNRTTDCCCKLVKEHDDRPAITERNVRRAISRIGTELFPLLFEVKRADTLGQSM 361
Query: 342 HQDTCFI----------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
++ + ++L+D K + G D++K G+ PG K+G+IL ++
Sbjct: 362 YKRAEKLEYIAEYESVYRKILADHQCVSKKEMKINGSDLIKMGVEPGPKLGDILDRLYEQ 421
Query: 392 WINSSFQLSQEDLHHLLRKLIAS 414
++ + L L K+I S
Sbjct: 422 VLDDPSLNEAQKLKELANKIITS 444
>gi|296446273|ref|ZP_06888219.1| Polynucleotide adenylyltransferase region [Methylosinus
trichosporium OB3b]
gi|296256174|gb|EFH03255.1| Polynucleotide adenylyltransferase region [Methylosinus
trichosporium OB3b]
Length = 409
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 126/406 (31%), Positives = 200/406 (49%), Gaps = 7/406 (1%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D + + + L ++ IVGGAVRDSLM ++D+ATT LP+ VM + K
Sbjct: 6 LADPKIRRLFAALAATGGETRIVGGAVRDSLMGRRPHEVDLATTALPEAVMAAAAAAGLK 65
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
PT I +GT+ I+ F++TTLR D+ T GR+AKV F D++AD+LRRDFTINAL
Sbjct: 66 CAPTGIEHGTVTIVVEGTPFEVTTLREDVETFGRHAKVRFGDDFEADALRRDFTINALSL 125
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ G + DY GGL DL R I+FIGD RI ED+LR+LRFFRF A +G +D GL A
Sbjct: 126 SEDGALHDYTGGLADLEARHIRFIGDPATRIAEDHLRVLRFFRFHASFGAGALDPAGLHA 185
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+I A+ L+ LS+ER+ +E KLL A+ + + GI + + L++L+ +
Sbjct: 186 AILARHSLQKLSAERLRAETLKLLAARGAVAVAREVSQAGILEIVVGATFPARLERLAAI 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+A F + L+ V++ + + + + + S
Sbjct: 246 EDALGRFVDPLLRLIALCVIVEEDADRLRERLRLSNIEHKRAASAARLLAKLHGAETAPS 305
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
++ +L ++ G H N D L+ + P FP+ D
Sbjct: 306 ELDLTRLLFVEGRDAARDA---LALAHAENRAPVDDDGFLRAARFLAEAPAPDFPVKAAD 362
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
++ G+ PG+ +G +L + +WI + F ++ +L+ +
Sbjct: 363 LMARGLLPGRALGAVLKELQAKWIRAGFPKDP----AIVTRLVEEA 404
>gi|257086747|ref|ZP_05581108.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis D6]
gi|256994777|gb|EEU82079.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis D6]
gi|315027269|gb|EFT39201.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX2137]
Length = 406
Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 91/401 (22%), Positives = 170/401 (42%), Gaps = 16/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + K + +
Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRSLRFASQLDFKIEEKTLAAIA 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
KI + LL + L Q L +L +
Sbjct: 187 EFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPKLREQGAGLFRLMDLP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + +LL + + + I S K + L ++ + + LS
Sbjct: 247 ARQIETEAEAWTLLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQLVRG--LRFRLSN 301
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G++ + ++ ++ +++ + ++ +TG D+
Sbjct: 302 DWQPMMLYELGEESAVLVERLLYYYQQDS----QVQVTKELVKALPIHQRHELAITGKDL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PGK +G ++ +Q + S + QE L +K
Sbjct: 358 LAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 398
>gi|315038203|ref|YP_004031771.1| tRNA CCA-pyrophosphorylase [Lactobacillus amylovorus GRL 1112]
gi|312276336|gb|ADQ58976.1| tRNA CCA-pyrophosphorylase [Lactobacillus amylovorus GRL 1112]
Length = 399
Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 89/399 (22%), Positives = 162/399 (40%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F K+ I T
Sbjct: 14 AMPVLRTLEDAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKELFDKS----IDTG 69
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D
Sbjct: 70 IKHGTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDMH 129
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G ++D G+ DL+N I+ +G+ R ED LR++R RF + E ++ A
Sbjct: 130 GDIVDLFNGIEDLKNHIIRAVGNPEKRFHEDALRMMRAVRFMSQL-EFKLEEKTEQAIKD 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ LK +S ERI E K+ A + L QV
Sbjct: 189 NHELLKKISVERIREEFVKMGLGPFSRQAFQI---FLDTQLSEDVPDFAGKKDLLQVYPQ 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ SL I+++ ++I + + + + +
Sbjct: 246 LKFSPTMETSLWAVIIILLKVSNENIGKFMRDWKNSNAMTEKVEQIIKMFDLIADHVPTD 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ G+ ++I + + L + ++ + + G ++K
Sbjct: 306 Y--ELFEAGEDIIINTIDVADIL----GQPVSSEALVDRYLALPIKTPSELAVDGRFLIK 359
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
G+ PG ++G L +++ + + S+E + L L
Sbjct: 360 RGMRPGAQLGRTLNQIRKKVVACEIENSEEAIEQYLDDL 398
>gi|256961930|ref|ZP_05566101.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus
faecalis Merz96]
gi|256952426|gb|EEU69058.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus
faecalis Merz96]
Length = 406
Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 91/401 (22%), Positives = 168/401 (41%), Gaps = 16/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + K + +
Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFKIEEKTLAAIA 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
KI + LL + L Q L +L +
Sbjct: 187 EFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPELREQGAGLFRLMDLP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + +LL + + + I S K + L ++ + + LS
Sbjct: 247 ARQIETEAEAWTLLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQLVRG--LRFRLSN 301
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G++ + ++ +++ + ++ +TG D+
Sbjct: 302 DWQPMMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIHQRHELAITGKDL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PGK +G ++ +Q + S + QE L +K
Sbjct: 358 LAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 398
>gi|257416090|ref|ZP_05593084.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis AR01/DG]
gi|257157918|gb|EEU87878.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis ARO1/DG]
Length = 406
Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 91/401 (22%), Positives = 168/401 (41%), Gaps = 16/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + K + +
Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFKIEEKTLAAIA 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
KI + LL + L Q L +L +
Sbjct: 187 EFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPKLREQGAGLFRLMDLP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + +LL + + + I S K + L ++ + + LS
Sbjct: 247 ARQIETEAEAWTLLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQLVRG--LRFRLSN 301
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G++ + ++ +++ + ++ +TG D+
Sbjct: 302 DWQPMMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIHQRHELAITGKDL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PGK +G ++ +Q + S + QE L +K
Sbjct: 358 LAILEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 398
>gi|307278077|ref|ZP_07559161.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0860]
gi|306505474|gb|EFM74660.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0860]
Length = 406
Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 91/401 (22%), Positives = 168/401 (41%), Gaps = 16/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + K + +
Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFKIEEKTLAAIA 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
KI + LL + L Q L +L +
Sbjct: 187 EFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPKLREQGAGLFRLMDLP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + +LL + + + I S K + L ++ + + LS
Sbjct: 247 ARQIETEAEAWALLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQLVRG--LRFRLSN 301
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G++ + ++ +++ + ++ +TG D+
Sbjct: 302 DWQPMMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIHQRHELAITGKDL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PGK +G ++ +Q + S + QE L +K
Sbjct: 358 LAILEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 398
>gi|199598698|ref|ZP_03212112.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus
rhamnosus HN001]
gi|199590386|gb|EDY98478.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus
rhamnosus HN001]
Length = 398
Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 96/401 (23%), Positives = 169/401 (42%), Gaps = 22/401 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
I IL + ++ VGG+VRD+L+ L + D+DIA++ P+ + RIF + + T
Sbjct: 12 AAIPILKKIEAAGYEAYFVGGSVRDALLGLPIHDVDIASSAYPEEIKRIFK----RTVDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ +++TT R++ R V F R D RRDFTINAL
Sbjct: 68 GIEHGTVMVLDHGTGYEVTTFRTESAYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVRH 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID GL DL+NR ++ +GD H R ED LR++R RF + G I++ A
Sbjct: 128 DGTIIDLFDGLTDLKNRQLRAVGDPHERFHEDALRMMRAVRFESQLGFH-IEATTKAAIA 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQVI 250
LK +S ERI +E N+LL + + + L + +L Q S++
Sbjct: 187 ANAPLLKHISVERIAAEFNRLLVGIDRRAGMQDFLDTHLFAYAPKLAPHQAALQQFSELP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ L F++ ++ S + ++ + T +
Sbjct: 247 NQAFTSIASGWTALIFMLKVAP------ESFLPAWKQSNDLMGLVDQAVTLLRKMPTPTA 300
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G + ++ + + + + + K LTG D+
Sbjct: 301 WD----LYSAGSAAVAVVSEVAALMDHQFV----PASLTTAYEALPIHSKKTLALTGRDL 352
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
++ G+ PG +G IL + ++ S + L ++
Sbjct: 353 IQAGMRPGPAMGKILHQIEYRVVDGSLPNDSKKLLAAAIEM 393
>gi|296876424|ref|ZP_06900476.1| tRNA adenylyltransferase [Streptococcus parasanguinis ATCC 15912]
gi|296432714|gb|EFH18509.1| tRNA adenylyltransferase [Streptococcus parasanguinis ATCC 15912]
Length = 403
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 93/406 (22%), Positives = 185/406 (45%), Gaps = 17/406 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + IL + ++ VGG+VRD+L++ + D+DIA++ P+ IF + +
Sbjct: 12 EALPILEKIKAAGFEAYFVGGSVRDALLDRPIHDVDIASSSYPEETKAIFD----RTVDI 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++ITT R++ + R + V F R + D RRDFT+NA ++
Sbjct: 68 GIEHGTVLVLENGQEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+G+++D GL DL N+ ++ +G H R ED LRI+R FRF A G ++ A
Sbjct: 128 KGEIVDLFHGLEDLENKVLRAVGLPHERFNEDALRIMRGFRFQASLGF-ELEEATSDAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L+ +S ER + E +KLL + + M + G + + ++++ + + ++ +
Sbjct: 187 ECAPLLEKISVERTFIEFDKLLLSPYWRQGVEAMLSSGAYHYL-PEMKDRK-EAIERLFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E + + + L+ + + I KK+ RE + ++ S+
Sbjct: 245 IELEYTFSTSE-QAWAALVLALEIQDIPKFFKKWKTSREFAKTVEQIVEILKLREKGSLD 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y ++ +L+ AL D I +V + K + G ++
Sbjct: 304 KRACYKYEKRLLLLAEELREGYALSV------DYLVIERVYDSLTIHDKHEVVVNGGMLI 357
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
K YG PG +G IL + ++ +E + +++ +
Sbjct: 358 KEYGFQPGPALGEILTKIEYAIVDGELANEKEAIIAYIQQAKEEEK 403
>gi|291548183|emb|CBL21291.1| uncharacterized domain HDIG [Ruminococcus sp. SR1/5]
Length = 446
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 92/438 (21%), Positives = 171/438 (39%), Gaps = 48/438 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
IL +LN+ ++ +VGG VRDS+++ D DI T+ LP++V +F + + T
Sbjct: 9 AEQILHILNEAGYEAYVVGGCVRDSILDRVPGDWDITTSALPEQVKELFH----RTVDTG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ K+ F++TT R D GR+ V FTR + D RRDFTINA+
Sbjct: 65 IQHGTVTVMMGKEGFEVTTYRVDGEYHDGRHPDAVTFTRSLEEDLKRRDFTINAMAYHPG 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D GG+ D+ + I+ +GD R ED LR+LR RF A G ++ +
Sbjct: 125 HGLVDLFGGMEDINRKIIRCVGDPVERFTEDALRMLRAVRFSAQLGFTVEENTKAALARM 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + + + L+ + + + G+ +E + +
Sbjct: 185 SGNLEHVSAERIQTELVKLLVSDHP--DYLRTAWETGLTREFLPEFDACMETAQNTPHHC 242
Query: 253 EQVFEW--------KIDSLLRFIVLISWQDKKSIL----------------------SMA 282
V E + D LLR +L+ K + +
Sbjct: 243 CSVGEHILKSLTEIENDRLLRITMLLHDIAKPVVKKTDENGRDHFKTHGPAGEKLAGKIL 302
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
++ + + T ++++ L G+++ LK+ A + T+
Sbjct: 303 RRLKFDNVTIRNTCRLIRYHDLRPTPDAEDVRRAVNLIGEELFPLYLKVQKADLLSQSTY 362
Query: 343 QDTCFILQV----------LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
+ + ++ L ++G D++K G P G +G +L
Sbjct: 363 RREEKLARLSGVTEAYQGILERGECTSLKTLAVSGKDLIKAGHPAGPALGALLERLLDCV 422
Query: 393 INSSFQLSQEDLHHLLRK 410
+ ++E L K
Sbjct: 423 LKDPTLNTKEKLLETAEK 440
>gi|255003514|ref|ZP_05278478.1| poly (A) polymerase (pcnB) [Anaplasma marginale str. Puerto Rico]
Length = 405
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 116/379 (30%), Positives = 177/379 (46%), Gaps = 10/379 (2%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
+ + + +VGG VRDS++ DID+AT ++P+ V++ K IPT I +G
Sbjct: 1 MEAIEGARGNARLVGGCVRDSVLGRDTTDIDLATDLVPEMVIQALGSAGIKTIPTGIKHG 60
Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138
T+ + ++ITTLR DL DGR+A V FT W D+ RRDFT NALY D+ GK+ DY
Sbjct: 61 TVTAVVAGIPYEITTLRRDLECDGRHAAVAFTNSWMEDASRRDFTFNALYCDKHGKIYDY 120
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-SIKAKKGL 197
G+ DL NRT+ FIGDA RI ED+LRILR FRF A +K+ S+ ++ K L
Sbjct: 121 FSGMQDLENRTVVFIGDAEARINEDFLRILRVFRFHASICDKSPLSEEIIFLCNKYADSL 180
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
LS ERI SE KLL N + + M G+ ++ + + +LS A +
Sbjct: 181 AKLSRERIRSEFFKLLACTNCASTLKIMEGCGVLHQVVP--YPVQIGRLSCTHLAGRAPI 238
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
K+ ++L+ D + + L+ LS + +K
Sbjct: 239 TKLAAILKGYAHT---DMSGTVEGLEALLRLSRKEKKLLETLLTTNLPFPLSTTQQQKYL 295
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
G + + + + + L+ L + P++G D+ K G
Sbjct: 296 NDLG----TDVYRDLVIVSFLSKETLSASAFLEHLEYTKQFAPLSLPVSGKDLAKLGYKE 351
Query: 378 GKKVGNILVHCKQEWINSS 396
GK +G+ L K+ W +
Sbjct: 352 GKLLGHTLKRLKETWERNP 370
>gi|227535133|ref|ZP_03965182.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|227187178|gb|EEI67245.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
Length = 407
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 98/406 (24%), Positives = 171/406 (42%), Gaps = 22/406 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I IL + ++ VGG+VRD+++ L + D+DIA++ P + RIF +T
Sbjct: 20 KAAIPILKKIEAAGYEAYFVGGSVRDAILGLPIHDVDIASSAYPAEIKRIFKRTA----D 75
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ +++TT R++ R V F R D RRDFTINAL
Sbjct: 76 TGIEHGTVMVLDHGTGYEVTTFRTESRYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVR 135
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G +ID GL DL++ ++ +G+ H R ED LR++R RF + G I+ A
Sbjct: 136 HDGTIIDLFDGLKDLQHHQLRAVGNPHERFHEDALRMMRAVRFESQLGF-GIEPATKAAI 194
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQLSQV 249
K L +S ER+ +E N+LL + + +F + E +L Q SQ+
Sbjct: 195 ADNAKLLVHISVERVAAEFNRLLTGIDRRAGLQDFIETRLFAYAPKMAAHETALTQFSQL 254
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ ++ SL + + + L M K + E+ + +
Sbjct: 255 ------PDTQLTSLASGWAALIFLLRTQPLVMLKAWKQSNELITLVTQTVKLLQVMPNPT 308
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ Y G+ + ++ L D + + + + K LTG D
Sbjct: 309 AWD----LYQAGEAAVTTASEVQKLLT----PDFDQQQLAEAYAALPIHSKKELALTGAD 360
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
++K G+ PG +G L +Q + + + L + ++
Sbjct: 361 LIKAGVRPGPAMGKALNQIEQRVVAGALPNELKKLLPIATEMSQDR 406
>gi|301066431|ref|YP_003788454.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus casei
str. Zhang]
gi|300438838|gb|ADK18604.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus casei
str. Zhang]
Length = 398
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 98/406 (24%), Positives = 171/406 (42%), Gaps = 22/406 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I IL + ++ VGG+VRD+++ L + D+DIA++ P + RIF +T
Sbjct: 11 KAAIPILKKIEVAGYEAYFVGGSVRDAILGLPIHDVDIASSAYPAEIKRIFKRTA----D 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ +++TT R++ R V F R D RRDFTINAL
Sbjct: 67 TGIEHGTVMVLDHGTGYEVTTFRTESRYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVR 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G +ID GL DL++ ++ +G+ H R ED LR++R RF + G I+ A
Sbjct: 127 HDGTIIDLFDGLKDLQHHQLRAVGNPHERFHEDALRMMRAVRFESQLGF-GIEPATKAAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQLSQV 249
K L +S ER+ +E N+LL + + +F + E +L Q SQ+
Sbjct: 186 ADNAKLLVHISVERVAAEFNRLLTGIDRRAGLQDFIETRLFAYAPKMAAHETALTQFSQL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ ++ SL + + + L M K + E+ + +
Sbjct: 246 ------PDTQLTSLASGWAALIFLLRTQPLVMLKAWKQSNELITLVTQTVKLLQVMPNPT 299
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ Y G+ + ++ L D + + + + K LTG D
Sbjct: 300 AWD----LYQAGEAAVTTASEVQKLLT----PDFDQQQLAEAYAALPIHSKKELALTGAD 351
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
++K G+ PG +G L +Q + + + L + ++
Sbjct: 352 LIKAGVRPGPAMGKALNQIEQRVVAGALPNELKKLLPIATEMSQDR 397
>gi|116617867|ref|YP_818238.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|122271932|sp|Q03Y57|CCA_LEUMM RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|116096714|gb|ABJ61865.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 401
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 92/405 (22%), Positives = 172/405 (42%), Gaps = 21/405 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
D IL+ L ++ VGG+VRD+++ ++ D+DIA++ P+ V +F + T
Sbjct: 12 DAQPILTKLEDAGFEAYFVGGSVRDTMLGKTIHDVDIASSAFPEEVKSLFHN----TVDT 67
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ITT R S R V F R + D RRDFTINAL
Sbjct: 68 GIQHGTVMVLDHGTGYEITTFRVESTYTDFRRPDHVTFVRSLEEDLKRRDFTINALAMRH 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+V+D GL D++ I+ +GDA R ED LR++R RF A G NI++D A +
Sbjct: 128 DGEVLDLFDGLEDMKKGVIRAVGDAEKRFTEDALRMMRALRFSAQLGF-NIEADTQKALV 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQVI 250
L ++ ER+ E KLL ++ + + + +++ S S +
Sbjct: 187 DLAPNLAKIAVERVRVEFEKLLLGSQASQSLELALRDQVMNYLPGPHIEDWS----SIID 242
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + I+ + D K + + R + + + N K ++
Sbjct: 243 DLNKDQATNYTVAWAHILSRTQFDDKKRRQFMYDWKMSRNVMKTVNAIVPIVHNPKKSTV 302
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+I +V+ + ++ L + I ++ + K ++G ++
Sbjct: 303 FDIY--------QVLAYQEELLEVLSLTGSQPETIQRISHIIEMLPITKAADLNISGGEL 354
Query: 371 VKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++ GI PG +G +L + + + L ++ +
Sbjct: 355 IRSGILTPGPLLGRVLKKIEYAVVVGDILNDHDALEKFAKEYVND 399
>gi|315169724|gb|EFU13741.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX1342]
Length = 406
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 91/401 (22%), Positives = 169/401 (42%), Gaps = 16/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ID + G+ DL N+TI+ +G+ H R ED LR++R RF + K + +
Sbjct: 127 STGEIIDLLDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFKIEEKTLAAIA 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
KI + LL + L Q L +L +
Sbjct: 187 EFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPKLREQGAGLFRLMDLP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + +LL + + + I S K + L ++ + + LS
Sbjct: 247 ARQIETEAEAWTLLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQLVRG--LRFRLSN 301
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G++ + ++ +++ + ++ +TG D+
Sbjct: 302 DWQPMMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIHQRHELAITGKDL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PGK +G ++ +Q + S + QE L +K
Sbjct: 358 LAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 398
>gi|312875453|ref|ZP_07735456.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2053A-b]
gi|311088964|gb|EFQ47405.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2053A-b]
Length = 397
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 99/399 (24%), Positives = 172/399 (43%), Gaps = 18/399 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF K I
Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFE----KTID 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D
Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A
Sbjct: 127 ADGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGF-ELDLDTKKAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQV 249
+ L +S ERI E K+ K+ A + + +L+ ++ L S++
Sbjct: 186 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
++ I+++ I + + + + +
Sbjct: 246 ----NFSPVTEETFWATIIILLKLPNNEIAKFMRAWKNSNAMEHCVYDIVTF------FD 295
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + + + L L ++ I+ + + + G+
Sbjct: 296 LLSYRIPSNYELFSTNLDTIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNY 355
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++K GIP G ++G +LV K+ + + + + L
Sbjct: 356 LLKKGIPAGPRIGELLVEIKKAILERKLENNISAIDVFL 394
>gi|309808110|ref|ZP_07702026.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Lactobacillus iners LactinV 01V1-a]
gi|308168646|gb|EFO70748.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Lactobacillus iners LactinV 01V1-a]
Length = 397
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 100/399 (25%), Positives = 173/399 (43%), Gaps = 18/399 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF K I
Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFE----KTID 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D
Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A
Sbjct: 127 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGF-ELDLDTKKAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQV 249
+ L +S ERI E K+ K+ A + + +L+ ++ L S++
Sbjct: 186 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
++ I+++ I + + + + +
Sbjct: 246 ----NFSPVTEETFWATIIILLKLPNNEIAKFMRAWKNSNAMEHCVYDIVTF------FD 295
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + + + L L ++ I+ + + + G+
Sbjct: 296 LLSYRIPSNYELFSTNLDTIMQTLDLSNILGQPVNSQAIIDRYESLPLKNESELVIDGNY 355
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++K GIP G ++G ILV K+ + + + + L
Sbjct: 356 LLKKGIPAGPRIGEILVEIKKAILERKLENNISAIDVFL 394
>gi|300860482|ref|ZP_07106569.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TUSoD Ef11]
gi|300849521|gb|EFK77271.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TUSoD Ef11]
gi|315144420|gb|EFT88436.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX2141]
gi|315160448|gb|EFU04465.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0645]
Length = 406
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 89/401 (22%), Positives = 166/401 (41%), Gaps = 16/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + K + +
Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFKIEEKTLAAIA 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
KI + LL + L Q L +L +
Sbjct: 187 EFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPKLREQGAGLFRLMDLP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + +LL + + + I S K + L ++ + +
Sbjct: 247 ARQIETEVEAWTLLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLNND- 302
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G++ + ++ +++ + ++ +TG D+
Sbjct: 303 -WQPMMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIHQRHELAITGKDL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PGK +G ++ +Q + S + QE L +K
Sbjct: 358 LAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 398
>gi|306831587|ref|ZP_07464745.1| tRNA adenylyltransferase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304426372|gb|EFM29486.1| tRNA adenylyltransferase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 401
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 99/400 (24%), Positives = 173/400 (43%), Gaps = 16/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF + +
Sbjct: 12 EALPILKKIREAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKSIFH----RTVDI 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ITT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 68 GIEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID GL DL + ++ +G+ R ED LRI+R FRF A +I+ D A
Sbjct: 128 TGLIIDKFNGLADLEAKLLRAVGNPAERFNEDALRIMRGFRFAASLDF-DIEPDTFAAMA 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ER + E +KLL A I M K L E + D L Q+++
Sbjct: 187 AHAPLLEKISVERSFIEFDKLLMAPFWRKGIKAMITSQAQKY--LPYLENAHDNLQQLLD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
S + L+ D K + K + + + + + +
Sbjct: 245 DLACDYHFKTSEQAWSALLLALDVKDVRVFLKAWKTSSQFQKDVEKIVAIYRFRLENELD 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
++ Y YG ++ AL D I ++ ++ K + G ++
Sbjct: 305 KM--EMYRYGSC----LIEQAEALRAGFGLPVDFERIERLDKELTIHDKHEIVVNGGVLI 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
K PG ++G +L +++ + +E + +RK
Sbjct: 359 KELQYKPGPELGRVLKEIEEKIVLGELANDKEAIFDFIRK 398
>gi|307289102|ref|ZP_07569058.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0109]
gi|306499811|gb|EFM69172.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0109]
gi|315164011|gb|EFU08028.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX1302]
Length = 406
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 91/401 (22%), Positives = 169/401 (42%), Gaps = 16/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ID G+ DL ++TI+ +G+ H R ED LR++R RF + K + +
Sbjct: 127 STGEIIDLFDGIEDLTSQTIRAVGNPHERFHEDALRMMRGLRFASQLDFKIEEKTLAAIA 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
KI + LL + L Q L +L +
Sbjct: 187 EFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPKLREQGAGLFRLMDLP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + +LL + + + I S K + L ++ + + LS
Sbjct: 247 ARQIETEAEAWTLLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQLVRG--LRFRLSN 301
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G++ + ++ H +++ + ++ +TG D+
Sbjct: 302 DWQPMMLYELGEESAVLVERLLYYYH----QESQVQVTKELVKALPIHQRHELAITGKDL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PGK +G ++ +Q + S + QE L +K
Sbjct: 358 LAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 398
>gi|309805741|ref|ZP_07699781.1| tRNA adenylyltransferase [Lactobacillus iners LactinV 09V1-c]
gi|308164994|gb|EFO67237.1| tRNA adenylyltransferase [Lactobacillus iners LactinV 09V1-c]
Length = 397
Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 99/399 (24%), Positives = 173/399 (43%), Gaps = 18/399 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF K I
Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFE----KTID 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D
Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A
Sbjct: 127 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGF-ELDLDTKKAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQV 249
+ L +S ERI E K+ K+ A + + +L+ ++ L S++
Sbjct: 186 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
++ I+++ I + + + + +
Sbjct: 246 ----NFSPVTEETFWATIIILLKLPNNEIAKFMRAWKNSNAMEHCVYDIVTF------FD 295
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + + + L L ++ I+ + + + G+
Sbjct: 296 LLSYRIPSNYELFSTNLDTIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNY 355
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++K GIP G ++G +LV K+ + + + + L
Sbjct: 356 LLKQGIPAGPRIGELLVEIKKAILERKLENNISAIDVFL 394
>gi|255004636|ref|ZP_05279437.1| poly (A) polymerase (pcnB) [Anaplasma marginale str. Virginia]
Length = 405
Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 116/379 (30%), Positives = 177/379 (46%), Gaps = 10/379 (2%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
+ + + +VGG VRDS++ DID+AT ++P+ V++ K IPT I +G
Sbjct: 1 MEAIEGARGNARLVGGCVRDSVLGRDTTDIDLATDLVPEMVIQALGSAGIKTIPTGIKHG 60
Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138
T+ + ++ITTLR DL DGR+A V FT W D+ RRDFT NALY D+ GK+ DY
Sbjct: 61 TVTAVVAGIPYEITTLRRDLECDGRHAAVAFTNSWMEDASRRDFTFNALYCDKSGKIYDY 120
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-SIKAKKGL 197
G+ DL NRT+ FIGDA RI ED+LRILR FRF A +K+ S+ ++ K L
Sbjct: 121 FSGMQDLENRTVVFIGDAEARINEDFLRILRVFRFHASICDKSPLSEEIIFLCNKYADSL 180
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
LS ERI SE KLL N + + M G+ ++ + + +LS A +
Sbjct: 181 AKLSRERIRSEFFKLLACTNCASTLKIMEGCGVLHQVVP--YPVQIGRLSCTHLAGRAPI 238
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
K+ ++L+ D + + L+ LS + +K
Sbjct: 239 TKLAAILKGYAHT---DMSGTVEGLEALLRLSRKEKKLLETLLTTNLPFPLSTTQQQKYL 295
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
G + + + + + L+ L + P++G D+ K G
Sbjct: 296 NDLG----TDVYRDLVIVSFLSKETLSASAFLEHLEYTKQFAPLSLPVSGKDLAKLGYKE 351
Query: 378 GKKVGNILVHCKQEWINSS 396
GK +G+ L K+ W +
Sbjct: 352 GKLLGHTLKRLKETWERNP 370
>gi|227432250|ref|ZP_03914246.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|227352023|gb|EEJ42253.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
Length = 401
Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 91/405 (22%), Positives = 173/405 (42%), Gaps = 21/405 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
D IL+ L ++ VGG+VRD+++ ++ D+DIA++ P+ V +F + T
Sbjct: 12 DAQPILTKLEDAGFEAYFVGGSVRDTMLGKTIHDVDIASSAFPEEVKSLFHN----TVDT 67
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ITT R S R V F R + D RRDFTINAL
Sbjct: 68 GIQHGTVMVLDHGTGYEITTFRVESTYTDFRRPDHVTFVRSLEEDLKRRDFTINALAMRH 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+V+D GL D++ I+ +G+A R ED LR++R RF A G NI++D A +
Sbjct: 128 DGEVLDLFDGLEDMKKGVIRAVGNAEKRFTEDALRMMRALRFSAQLGF-NIEADTQKALV 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQVI 250
L ++ ER+ E KLL ++ + + + +++ S S +
Sbjct: 187 DLAPNLAKIAVERVRVEFEKLLLGSQASQSLELALRDQVMNYLPGPHIEDWS----SIID 242
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + I+ + D K + + R + + + N K ++
Sbjct: 243 DLNKDQATNYTVAWAHILSRTQFDDKKRRQFMYDWKMSRNVMKTVSAIVPIVHNPKKSTV 302
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+I +V+ + ++ L + I ++ + K ++G ++
Sbjct: 303 FDIY--------QVLAYQEELLEVLSLTGSQPETIQRISHIIELLPITKAADLNISGGEL 354
Query: 371 VKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++ GI PG +G++L + + + L ++ +
Sbjct: 355 IRSGILTPGPLLGHVLKKIEYAVVVGDILNDHDALEKFAKEYVND 399
>gi|194898865|ref|XP_001978983.1| GG10877 [Drosophila erecta]
gi|190650686|gb|EDV47941.1| GG10877 [Drosophila erecta]
Length = 477
Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 126/414 (30%), Positives = 219/414 (52%), Gaps = 22/414 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L +++L K + + I GGAVRD LM + +DID+ATT P+++ ++F K +
Sbjct: 71 IFTPELNELVALFKKYDYELRIAGGAVRDILMGIPPKDIDLATTATPEQMKQMFEKEEVR 130
Query: 70 VIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI K+ F++TTLR D+ TDGR+A+V++T DW+ D+ RRD TIN++
Sbjct: 131 MINANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVMYTTDWQLDANRRDLTINSM 190
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSD 185
+ G V DY G +DL++R + F+G+A RI ED+LRILR+FRF+ + D+
Sbjct: 191 FLGFDGTVYDYFYGYDDLQDRRVVFVGEADIRIKEDFLRILRYFRFYGRIASEEGKHDNA 250
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L A + KGL +S ERIWSE+ K++ + ++ +F+ I L +E L++
Sbjct: 251 TLSAIKENGKGLARISGERIWSELQKIVVGNFGSALFLELHRCNLFEYIGLP-EEPYLNE 309
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
++ +A FE +L ++ + + + M K+ L R ++ F +
Sbjct: 310 FDRLCKALDQFEKPHHPILYLTGMLHSVE--NAMEMHKRLKLSAYER--DLARFITQERE 365
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
K S + + + I + + L Y+ L++ + + W KP FP+
Sbjct: 366 KVDSQYTTLRDYQKLCLQKYIQRDFVEQLLKYSGK--------LELYNQLKSWVKPDFPI 417
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH----LLRKLIASS 415
G+ + ++G+ G ++G ++ K W +S FQL+ +DL +L K+ +SS
Sbjct: 418 KGNALAQHGL-NGMRLGLVMDELKLLWADSDFQLTHDDLLKKIPNVLEKIPSSS 470
>gi|309806747|ref|ZP_07700741.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Lactobacillus iners LactinV 03V1-b]
gi|308166862|gb|EFO69047.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Lactobacillus iners LactinV 03V1-b]
Length = 397
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 98/399 (24%), Positives = 173/399 (43%), Gaps = 18/399 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF K I
Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFE----KTID 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D
Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A
Sbjct: 127 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGF-GLDLDTKKAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQV 249
+ L +S ERI E K+ K+ A + + +L+ ++ L S++
Sbjct: 186 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
++ I+++ I + + + + +
Sbjct: 246 ----NFSPVTEETFWATIIILLKLPNNEIAKFMRAWKNSNAMEHCVYDIVTF------FD 295
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + + + L L ++ I+ + + + G+
Sbjct: 296 LLSYRIPSNYELFSTNLDTIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNY 355
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++K GIP G ++G +L+ K+ + + + + L
Sbjct: 356 LLKKGIPAGPRIGELLIEIKKAILERKLENNISAIDVFL 394
>gi|326388402|ref|ZP_08209998.1| polynucleotide adenylyltransferase region [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207134|gb|EGD57955.1| polynucleotide adenylyltransferase region [Novosphingobium
nitrogenifigens DSM 19370]
Length = 395
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 136/416 (32%), Positives = 199/416 (47%), Gaps = 29/416 (6%)
Query: 1 MVS-IVQHKWFHDSDLINILSLLNKGEDKS-CIVGGAVRDSLMNLSVQDIDIATTILPDR 58
M S + W DL ++ L+ + VGGAVRD+L+ ++V+DID+AT +LP+
Sbjct: 1 MTSSLPAAPWTRREDLAEVVLALDPDGEGLCRWVGGAVRDTLVGIAVKDIDMATRLLPEE 60
Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
+ K IPT +++GT+ + +ITTLR D+ TDGR+A V F+ DW+ D+
Sbjct: 61 TLARLKAAGIKAIPTGLAHGTVTALTAGGPVEITTLRRDVETDGRHATVAFSTDWREDAA 120
Query: 119 RRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTINALYAD + ++ DY GG DL ++FIGDA RI EDYLRILR+FRF A +
Sbjct: 121 RRDFTINALYADPRTLEISDYFGGQADLAAHRVRFIGDAETRIREDYLRILRYFRFHARF 180
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G D++ A + GLK LS ER+ E+ +LL +P + M G+ +I +
Sbjct: 181 GSLPADAEAEEACARLAPGLKGLSRERVGWELLRLLGHPDPAPTLRRMAELGVLAQILPE 240
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+L L E V LR + I D +A + L + L +
Sbjct: 241 ADPEALPPLVAAEACENVAPDS----LRRLAAILPPDPPLAEQVAARLRLSTAQKKRLAT 296
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
T E + L Y G +L + Q L+ +
Sbjct: 297 AAAR-----TSETGEPRALAYRLGMTEASDRLLLAG----------------QSLAPLAG 335
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
W P FPL G +V GI G V +L + WI+ F +E + +L++ IA
Sbjct: 336 WSPPTFPLKGGAIVARGIGAGPMVARLLRTVENRWIDEGFP-DEERIEAMLQEEIA 390
>gi|195055207|ref|XP_001994511.1| GH15807 [Drosophila grimshawi]
gi|193892274|gb|EDV91140.1| GH15807 [Drosophila grimshawi]
Length = 457
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 119/413 (28%), Positives = 203/413 (49%), Gaps = 21/413 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L +++L K + I GGAVRD LM + +D+D ATT P+++ +F+K +
Sbjct: 44 IFTPELETLVALFKKYNYELRIAGGAVRDILMKIKPKDVDFATTATPEQMKEMFTKEDVR 103
Query: 70 VIP-TSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI + F++TTLR D+ TDGR+A VVFT +W+ D+ RRD TIN++
Sbjct: 104 MINAKGEKHGTITPRINDMENFEVTTLRIDVRTDGRHADVVFTTNWQLDANRRDLTINSM 163
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY--GEKNIDSD 185
+ G V DY G +D++ R I F+GDA RI EDYLRILR+FRF+ + D
Sbjct: 164 FLGLDGTVYDYFYGYDDVQRRRIIFVGDADVRIKEDYLRILRYFRFYGRIAADPNSHDPA 223
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L A GL +SSER+W+E+ K++ ++ MYN G+ + L Q ++ +
Sbjct: 224 TLAAIKANGAGLARISSERVWAELRKIIAGNFGRELVLEMYNCGLLEHCGLPAQP-NISE 282
Query: 246 LSQVIEAEQVF-EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
++ + + F E +L L+ ++ L K S I+ +
Sbjct: 283 FERLCNSFKRFEEESHHPILYMCGLLHTTEQAMQLHERLKLSAYERDLALFITQQRHRID 342
Query: 305 QKTLSIPEIKK-LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
+ S+ + +K Y + + L L++ + W+ P F
Sbjct: 343 NEYKSLRDCQKLCLQPYAKRDYVEHLL-------------KYANKLELYQQLKAWQIPNF 389
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
P+ G+ + YG+ +K+G +L + W++S ++L+ E+L + ++ Q
Sbjct: 390 PIKGNMLSSYGLVH-RKLGLVLNELRLLWVDSDYKLTAEELLESVPTIMEQMQ 441
>gi|256853122|ref|ZP_05558492.1| poly A polymerase [Enterococcus faecalis T8]
gi|307291999|ref|ZP_07571868.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0411]
gi|256711581|gb|EEU26619.1| poly A polymerase [Enterococcus faecalis T8]
gi|306496997|gb|EFM66545.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX0411]
gi|315029388|gb|EFT41320.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX4000]
Length = 406
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 91/401 (22%), Positives = 168/401 (41%), Gaps = 16/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + K + +
Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFKIEEKTLAAIA 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
KI + LL + L Q L +L +
Sbjct: 187 EFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPKLREQGAGLFRLMDLP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + +LL + + + I S K + L ++ + + LS
Sbjct: 247 ARQIETEAEAWTLLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQLVRG--LRFRLSN 301
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G++ + ++ +++ + ++ +TG D+
Sbjct: 302 DWQPMMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIHQRHELTITGKDL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PGK +G ++ +Q + S + QE L +K
Sbjct: 358 LAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 398
>gi|253581048|ref|ZP_04858309.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847711|gb|EES75680.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 441
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 90/440 (20%), Positives = 172/440 (39%), Gaps = 48/440 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL +L K ++ +VGG VRDS++ S D DI T+ P++V +F + +
Sbjct: 7 KNAETILHILEKAGYEAYVVGGCVRDSILGRSPDDWDITTSAKPEQVKALFH----RTVD 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++ K+ +++TT R D DGR+ K FT K D RRDFTINA+ +
Sbjct: 63 TGLQHGTVTVLMEKEGYEVTTYRVDGEYEDGRHPKEVTFTASLKEDLKRRDFTINAMAYN 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++D GGL D+ + I+ +GD R ED LRI+R RF A G +
Sbjct: 123 PSSGLVDLFGGLEDIERKIIRCVGDPLERFTEDALRIMRAVRFSAQLGFAIEEETRKALK 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ A + + + L+ + + Y GI E + +
Sbjct: 183 VLAPNLKHVSAERIQVELVKLLMSPHP--DYLRVAYEAGITAEFLPEFDACMTTSQNTPH 240
Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDKKSILS---------------------- 280
V E + D +LR +L+ K +
Sbjct: 241 HCYTVGEHILHSLCHVRADKVLRITMLLHDIGKPVVRKTDENGRDHFKMHGIAGEKRAAQ 300
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ ++ + + + ++ + +++ G+ + L++ A
Sbjct: 301 ILRRLKFDNDTIRKVTRLVKWHDDRPDGTTKAVRRAVNRIGEDLFPYYLEVQQADMLAQS 360
Query: 341 THQDTCFILQV----------LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390
++ ++ +++ +TG D+++ G PG+++G L +
Sbjct: 361 DYRRAEKQERLDKVKEAYETIINEHQCVSLKTLAVTGKDLIEAGYKPGREIGETLNRLLE 420
Query: 391 EWINSSFQLSQEDLHHLLRK 410
+ + +E L LL +
Sbjct: 421 VVLADPQKNQKEILLGLLDE 440
>gi|259417404|ref|ZP_05741323.1| polynucleotide adenylyltransferase region [Silicibacter sp.
TrichCH4B]
gi|259346310|gb|EEW58124.1| polynucleotide adenylyltransferase region [Silicibacter sp.
TrichCH4B]
Length = 386
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 127/410 (30%), Positives = 193/410 (47%), Gaps = 28/410 (6%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ W + + L + VGG VR++L+ V D+D++T + P+RV+
Sbjct: 2 KIDQPWLTSASTRAVCDALIAARAEIYFVGGCVRNALLQEPVSDLDLSTNVEPERVVEAA 61
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
+ K IPT I +GT+ ++ F+ITT R D+ TDGR A V F D D+ RRDFT
Sbjct: 62 TIAGLKAIPTGIDHGTVTVVAGGIPFEITTFRKDVATDGRRAVVAFATDIAEDARRRDFT 121
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KN 181
+NALYA G+V+D +GGL+DLR R ++FIGDA RI EDYLRILR+FRF + YG+ +
Sbjct: 122 MNALYARPNGEVVDPLGGLDDLRARRVRFIGDATQRIREDYLRILRYFRFHSWYGDAAEG 181
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
D + L A + ++GL LS ER+ SE+ KLL A +P +I M G+ + +
Sbjct: 182 FDPEALGAIAETQEGLDHLSRERVGSEMIKLLSAADPAPSIATMRQIGVLAHVLPGADDR 241
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+L L + E K ++ L + QD L + +
Sbjct: 242 ALAPLIHL---EAGMPIKAETRLAALGGDRIQD---------TLRLSKSTAARVRLLRQL 289
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ Y + L + AL L+ Q DI
Sbjct: 290 AEGMAGGAELA-----YRHDVDTARRALMLRSALLEMPLSPQLEP-------DIALGASA 337
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
FP++ D++ + G +G+ L + EWI S FQ+ ++DL L +
Sbjct: 338 KFPISAQDLMPF--VQGAALGHALKTLEAEWIASGFQIDKQDLIERLPDI 385
>gi|254487550|ref|ZP_05100755.1| tRNA nucleotidyltransferase [Roseobacter sp. GAI101]
gi|214044419|gb|EEB85057.1| tRNA nucleotidyltransferase [Roseobacter sp. GAI101]
Length = 394
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 126/404 (31%), Positives = 189/404 (46%), Gaps = 26/404 (6%)
Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65
+W D+D + + G VGG VR++L+ L D+D++T LP+RVM + +
Sbjct: 12 DTRWLADADAQAVCDAVQDGGHTIYFVGGCVRNALLGLPDSDVDMSTDALPERVMALAKR 71
Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
K +PT + +GT+ ++ K F++TT R D+ TDGR A V F+ + D+ RRDFTIN
Sbjct: 72 AGLKTVPTGVEHGTVTVVSGGKGFEVTTFRRDVQTDGRRAVVAFSNNIDDDARRRDFTIN 131
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NID 183
ALYAD +G+VID + GL DLR R ++FI DA RI EDYLR LR+FRF A Y + D
Sbjct: 132 ALYADAEGRVIDPLEGLPDLRARRVRFIEDAEARIREDYLRTLRYFRFHAWYADPAKGFD 191
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
D L A GL+ LS+ERI +E+ KLL A +P A+ M G+ I +
Sbjct: 192 PDALSAIASNTAGLETLSAERIGAEMQKLLSAPDPAPALAGMRQTGVLNAILPGADD--- 248
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
+S ++ E + + + R L L + L + F
Sbjct: 249 RWISMLVHFEALLGMRAHWIWRLAALGGDDAVTR-------LRLSKADGRMLEQIRDAAF 301
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
TLS Y +G + + + L + VL I + F
Sbjct: 302 EGNTLSEIA-----YRHGIMIAQGAMLLRACLAETPPD-------IAVLETIDAATQAKF 349
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
P+ D++ G +G L + WI S F +++ L +
Sbjct: 350 PVAAKDLMPA--YAGPALGARLAQLEAAWIASDFSATRDTLLDM 391
>gi|149912910|ref|ZP_01901444.1| polyA polymerase family protein [Roseobacter sp. AzwK-3b]
gi|149813316|gb|EDM73142.1| polyA polymerase family protein [Roseobacter sp. AzwK-3b]
Length = 363
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 118/387 (30%), Positives = 182/387 (47%), Gaps = 26/387 (6%)
Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
++ ++ VGG VR+SL+N V DIDIAT P+ V+R+ K +PT + +GT+
Sbjct: 1 MIEDAGHQALFVGGCVRNSLLNKPVSDIDIATDAHPETVIRLAEAAGLKPVPTGLDHGTV 60
Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140
++ ++TT R D+ T GR+A V ++ D D+ RRDFT+NALYA G ++D +G
Sbjct: 61 TVVSDHVPHEVTTFREDVETYGRHAVVAYSDDVMQDARRRDFTMNALYARPDGMLVDPLG 120
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKGLK 198
GL+DL+ R ++FI D + RI EDYLRILRFFRF A YG+ ++ D A + GL
Sbjct: 121 GLSDLKARRVRFIDDPNQRIREDYLRILRFFRFHAWYGDPDMGLDADGLAAVSEHVDGLA 180
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
LS ER SEI KLL A +P ++ M G+ + + +L L + +
Sbjct: 181 GLSRERTGSEIVKLLTAPDPAPSVAAMRACGVLAAVLPGSDDRALAPLVHLEQI------ 234
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + + + S+ R S + +L Y
Sbjct: 235 ---------AGLEPEPMRRLSSLGGDMVASRLRLSKAQSKRLDLLLAEAALAKPPMELGY 285
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG 378
YG + + + AL + + Q++ FP+T D++ G
Sbjct: 286 RYGIDPGLDIVVLRHALLESPFD----SAVRQIMEQA---SHAKFPVTPHDLMSE--YSG 336
Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLH 405
+G L +Q WI S F L +EDL
Sbjct: 337 PALGRRLSELEQRWIESGFSLGREDLL 363
>gi|312872366|ref|ZP_07732436.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2062A-h1]
gi|312874002|ref|ZP_07734038.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2052A-d]
gi|329921299|ref|ZP_08277737.1| tRNA adenylyltransferase [Lactobacillus iners SPIN 1401G]
gi|311090551|gb|EFQ48959.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2052A-d]
gi|311092189|gb|EFQ50563.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2062A-h1]
gi|328934591|gb|EGG31095.1| tRNA adenylyltransferase [Lactobacillus iners SPIN 1401G]
Length = 397
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 99/399 (24%), Positives = 173/399 (43%), Gaps = 18/399 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF K I
Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFE----KTID 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D
Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A
Sbjct: 127 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGF-ELDLDTKKAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQV 249
+ L +S ERI E K+ K+ A + + +L+ ++ L S++
Sbjct: 186 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
++ I+++ I + + + + +
Sbjct: 246 ----NFSPVTEETFWATIIILLKLPNNEIAKFMRAWKNSNAMEHCVYDIVTF------FD 295
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + + + L L ++ I+ + + + G+
Sbjct: 296 LLSYRIPSNYELFSTNLDTIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNY 355
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++K GIP G ++G +LV K+ + + + + L
Sbjct: 356 LLKKGIPAGPRIGELLVEIKKAILERKLENNISAIDVFL 394
>gi|195978215|ref|YP_002123459.1| tRNA CCA-pyrophosphorylase [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|195974920|gb|ACG62446.1| CCA-adding enzyme, tRNA nucleotidyltransferase [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 398
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 96/400 (24%), Positives = 182/400 (45%), Gaps = 18/400 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ + + ++ VGG+VRDSL+N + D+DIA + P+ IF + I
Sbjct: 8 ALPIVKKIKQAGFEAYFVGGSVRDSLLNRPIHDVDIAASCYPEETKAIFP----RTIDVG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 64 IEHGTVLVLENGSEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDED 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL+++ ++ +G R ED LRI+R FRF A +I+++ A
Sbjct: 124 GQIIDIFNGLEDLKHKLLRAVGRPQERFEEDALRIMRGFRFAASLDF-DIEAETFEAMKS 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-QEISLDQLSQVIE 251
L+ +S ER + E++KLL A I+ M F + V +E +L + + +
Sbjct: 183 HAPLLEKISVERSFIELDKLLMAPKWRKGILAMIACQAFNYLPGLVGKEEALQKYLKTLA 242
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
A+ VF+ + +V++ K+ L K + + + S + ++
Sbjct: 243 ADYVFQDNHQAWAYLLVMLELDQPKAFLKAWKTSNDFQRRVTMMTSLYQIRQERQLEK-- 300
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y +G + L + + + ++ K + G ++
Sbjct: 301 ---WDIYSFGK----DLALLVEDLRQAQGLVSEAKRVESLYQELTIHDKHDIVVNGSYLI 353
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ G+ PG ++G +L +Q + +E + +R+
Sbjct: 354 RELGMKPGPQLGMLLNQIEQAIVEGRLVNQREHIEAFVRR 393
>gi|227893497|ref|ZP_04011302.1| tRNA CCA-pyrophosphorylase [Lactobacillus ultunensis DSM 16047]
gi|227864722|gb|EEJ72143.1| tRNA CCA-pyrophosphorylase [Lactobacillus ultunensis DSM 16047]
Length = 399
Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 93/399 (23%), Positives = 174/399 (43%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L++ V D+DI T+ P+ V ++F K+ I T
Sbjct: 14 AMPVLQTLESAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKKLFEKS----IDTG 69
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ I+ + ++ITT R++ R V F ++ D RRDFTINAL D +
Sbjct: 70 IKHGTVTILYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDTR 129
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL+N I+ +G+ R ED LR++R RF + E ++ + A
Sbjct: 130 GEIVDLFDGLKDLKNHIIRAVGNPEKRFHEDALRMMRAVRFMSQL-EFKLEENTEQAIKD 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ LK +S ERI E K+ + A + + +++ L +V
Sbjct: 189 NHELLKKISVERIREEFVKMGLGSHSRQAFQIFLDTELSEDVP---DFAGKKDLLEVYPK 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
Q +L I+++ I + + + + + +
Sbjct: 246 LQFSPTTESNLWALIIILLKVPDDQISKFMRDWKNSNAMTEKVERIIKMFDLIADHAPSD 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ G++++I + I L + ++ + K + G +++
Sbjct: 306 Y--ELFEAGEEILINTIDIAHIL----GQPISSEALVDRYMALPIKKASELAIDGRFLIE 359
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
G+ PG K+G+ L ++ ++S + +QE + L L
Sbjct: 360 RGMRPGAKLGHTLNRIRELVVSSKIENNQEAIGQYLDNL 398
>gi|300214483|gb|ADJ78899.1| CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA
adenylyl-/cytidylyl- transferase) (tRNA
CCA-pyrophosphorylase) (tRNA-NT) [Lactobacillus
salivarius CECT 5713]
Length = 404
Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 102/407 (25%), Positives = 183/407 (44%), Gaps = 18/407 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL + + ++ VGG+VRD+L+ L + D+DIA++ P+ + +IFS K +
Sbjct: 11 KKALPILEKIREAGFEAYFVGGSVRDTLLGLPIHDVDIASSAYPEEIKQIFS----KTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++ ++ITT R++ R KV F R + D RRD TINAL D
Sbjct: 67 TGVEHGTVMVLDHGTGYEITTFRTESTYQDYRRPDKVEFVRSLEEDLKRRDLTINALAMD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+GK+ID GL DL+N I+ +G+ R ED LR++R RF + ++ D A
Sbjct: 127 DKGKIIDLFDGLKDLKNGIIRAVGNPEERFHEDALRMMRAVRFGSQLDF-KVELDTFNAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAI-VHMYNGGIFKEIFLDVQEISLDQLSQV 249
K L+ ++ ERI E KLL KNP + + + L + +
Sbjct: 186 KKNSHLLEKIAIERIHVEWVKLLLGKNPKQGLQEFLDTELYKYCPLFADKYAELKSILEF 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ + E + +LL + + D ++L + I ++I+ C K
Sbjct: 246 SDFKLNTEEECWTLLSDVFKLKDTDISNLLR---SWKSSNNIIKYVIAASLCVQKIKDSK 302
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + +Y G ++++ +I + D + + + + G D
Sbjct: 303 L--DIETYYQNGIEIILTANQIAKIRGFGM----DDNELKINYDKLPIKSRKEMKINGKD 356
Query: 370 V-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ + G+ PGK +G IL ++E + + +E L +KL+
Sbjct: 357 LVQEAGVKPGKIMGEILNKLEKEIVFGNIINDKEILIENAKKLLEEK 403
>gi|302191340|ref|ZP_07267594.1| tRNA CCA-pyrophosphorylase [Lactobacillus iners AB-1]
gi|309809261|ref|ZP_07703130.1| tRNA adenylyltransferase [Lactobacillus iners SPIN 2503V10-D]
gi|325911998|ref|ZP_08174400.1| tRNA adenylyltransferase [Lactobacillus iners UPII 143-D]
gi|308170374|gb|EFO72398.1| tRNA adenylyltransferase [Lactobacillus iners SPIN 2503V10-D]
gi|325476183|gb|EGC79347.1| tRNA adenylyltransferase [Lactobacillus iners UPII 143-D]
Length = 397
Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 98/399 (24%), Positives = 173/399 (43%), Gaps = 18/399 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF K I
Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFE----KTID 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D
Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A
Sbjct: 127 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGF-ELDLDTKKAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQV 249
+ L +S ERI E K+ K+ A + + +L+ ++ L S++
Sbjct: 186 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
++ I+++ I + + + + +
Sbjct: 246 ----NFSPVTEETFWATIIILLKLPNNEIAKFMRAWKNSNAMEHCVYDIVTF------FD 295
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + + + L L ++ I+ + + + G+
Sbjct: 296 LLSYRIPSNYELFSTNLDTIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNY 355
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++K GIP G ++G +L+ K+ + + + + L
Sbjct: 356 LLKKGIPAGPRIGELLIEIKKAILERKLENNISAIDVFL 394
>gi|21357337|ref|NP_649578.1| CG2100, isoform A [Drosophila melanogaster]
gi|281360112|ref|NP_001163512.1| CG2100, isoform B [Drosophila melanogaster]
gi|7296685|gb|AAF51964.1| CG2100, isoform A [Drosophila melanogaster]
gi|16183624|gb|AAL13714.1| GM13341p [Drosophila melanogaster]
gi|220944702|gb|ACL84894.1| CG2100-PA [synthetic construct]
gi|220954638|gb|ACL89862.1| CG2100-PA [synthetic construct]
gi|272476817|gb|ACZ94811.1| CG2100, isoform B [Drosophila melanogaster]
Length = 477
Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 125/408 (30%), Positives = 210/408 (51%), Gaps = 18/408 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L ++++L K + + I GGAVRD LM + +DID+ATT PD++ ++F K +
Sbjct: 71 IFTPELNDLVALFKKYDYELRIAGGAVRDILMGIPPKDIDLATTATPDQMKQMFEKEEVR 130
Query: 70 VIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI K+ F++TTLR D+ TDGR+A+V++T DW+ D+ RRD TIN++
Sbjct: 131 MINANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVMYTTDWQLDANRRDLTINSM 190
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSD 185
+ G V DY G +DL+ R + F+G+A RI ED+LRILR+FRF+ E N D
Sbjct: 191 FLGFDGTVYDYFYGYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGRIASEENNHDKA 250
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L A + KGL +S ERIWSE+ K++ + M+ +F+ I L +E LD+
Sbjct: 251 TLAAIKENAKGLARISGERIWSELQKIVPGNFGAALFLEMHRCNLFEYIGLP-KEPYLDE 309
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
++ +A FE +L ++ + + K S ++ F +
Sbjct: 310 FDRLCKALDQFEKPHQPILYLAGMLHSVEDAMEMHKRLKLSAYERD----LARFITQERE 365
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
K S + + + I + + L Y+ L++ + + W KP FP+
Sbjct: 366 KVGSQYTTLRDYQKLCLQKYIQRDFVEQLLKYSGK--------LELYNQLKSWVKPDFPI 417
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
G+ + + G+ G ++G ++ K W +S FQL+ +DL + ++
Sbjct: 418 RGNALAQRGL-NGMRLGLVMDELKLLWADSDFQLTHDDLLKWIPNVLK 464
>gi|300173420|ref|YP_003772586.1| CCA-adding enzyme [Leuconostoc gasicomitatum LMG 18811]
gi|299887799|emb|CBL91767.1| CCA-adding enzyme [Leuconostoc gasicomitatum LMG 18811]
Length = 403
Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 103/406 (25%), Positives = 181/406 (44%), Gaps = 18/406 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
D +L L ++ VGGAVRD L+N + D+DIAT+ P+ V +F+ K I T
Sbjct: 12 DAQPVLKTLENAGFEAYFVGGAVRDMLLNKPIHDVDIATSAFPEEVKSLFN----KTIDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ + ++ITT R++ R KV F R K D RRDFTINAL +
Sbjct: 68 GIQHGTVMALDHGAGYEITTFRTESTYTDFRRPDKVTFVRSLKEDLKRRDFTINALAMNY 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G ++D GL+DL+N ++ +GDA R ED LR++R RF A E ID + A
Sbjct: 128 SGNIVDLFDGLSDLKNGIVRAVGDAEVRFTEDALRMMRALRFSAQL-EFAIDFNTQQALR 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
K L+ ++ ERI E K+L ++ + + D+ L ++ +E
Sbjct: 187 KLAPNLEKIAVERIRVEFEKILMGSQASESLQIASRDQVMAYLPGDIGTWDLSRIILDLE 246
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ Q +I + ++ S ++K I + + + RE + +T+
Sbjct: 247 SNQANTTQIAWI--HLLARSDLNEKKITQFMRMWKMSREDIKVTSLIVPLVRHIETVRKF 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
++ + Y Y D + L+ + + I + + K + G D++
Sbjct: 305 QLYQ-VYAYRD-------ILLSVLYLMGVPDEKVQQIDTNFATLPISKSADMAINGADLI 356
Query: 372 KYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G+ PG ++G L ++ + + + L +++L + +
Sbjct: 357 MTGLVKPGPEMGRTLKMMEKAVVLGQLENKHDVLLTYIKELKSDDK 402
>gi|259500651|ref|ZP_05743553.1| poly A polymerase [Lactobacillus iners DSM 13335]
gi|259168035|gb|EEW52530.1| poly A polymerase [Lactobacillus iners DSM 13335]
Length = 433
Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 98/399 (24%), Positives = 173/399 (43%), Gaps = 18/399 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF K I
Sbjct: 47 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFE----KTID 102
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D
Sbjct: 103 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 162
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A
Sbjct: 163 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGF-ELDLDTKKAI 221
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQV 249
+ L +S ERI E K+ K+ A + + +L+ ++ L S++
Sbjct: 222 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 281
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
++ I+++ I + + + + +
Sbjct: 282 ----NFSPVTEETFWATIIILLKLPNNEIAKFMRAWKNSNAMEHCVYDIVTF------FD 331
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + + + L L ++ I+ + + + G+
Sbjct: 332 LLSYRIPSNYELFSTNLDTIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNY 391
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++K GIP G ++G +L+ K+ + + + + L
Sbjct: 392 LLKKGIPAGPRIGELLIEIKKAILERKLENNISAIDVFL 430
>gi|306833732|ref|ZP_07466858.1| polyA polymerase [Streptococcus bovis ATCC 700338]
gi|304424069|gb|EFM27209.1| polyA polymerase [Streptococcus bovis ATCC 700338]
Length = 401
Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 98/400 (24%), Positives = 172/400 (43%), Gaps = 16/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF + +
Sbjct: 12 EALPILKKIREAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKSIFH----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ITT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 68 GIEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID GL DL + ++ +G+ R ED LRI+R FRF A +I+ D A
Sbjct: 128 TGLIIDKFNGLADLEAKLLRAVGNPAERFNEDALRIMRGFRFAASLDF-DIEPDTFTAMA 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ER + E +KLL A I M K L E + D L Q+++
Sbjct: 187 AHAPLLEKISVERSFIEFDKLLMAPFWRKGIKAMITSQAQKY--LPYLENAHDNLQQLLD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
S + L+ D K + K + + + + + +
Sbjct: 245 DLACNYHFKTSEQAWAALLLALDVKDVRVFLKAWKTSSQFQKDVEQIVAIYRFRLENELD 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
++ Y YG ++ L D I ++ ++ K + G ++
Sbjct: 305 KM--EMYRYGSC----LIEQAEDLRAGYGLPVDFKRIERLDKELTIHDKHEIVINGGVLI 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
K PG ++G +L +++ + +E + +RK
Sbjct: 359 KELQYKPGPELGQVLKEIEEKIVLGELANDKEAIFDFIRK 398
>gi|259503406|ref|ZP_05746308.1| polyA polymerase [Lactobacillus antri DSM 16041]
gi|259168651|gb|EEW53146.1| polyA polymerase [Lactobacillus antri DSM 16041]
Length = 401
Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 83/404 (20%), Positives = 154/404 (38%), Gaps = 17/404 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L + + ++ VGG VRD+++ + DIDIAT+ P + RIF + +
Sbjct: 11 EPARPVLQKIEEAGFEAYFVGGCVRDTILGDPIHDIDIATSAYPSEIKRIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ I+ ++ TT R++ R V F R D RRDFTINAL
Sbjct: 67 TGIEHGTVMILDHGIGYETTTFRTESGYQDFRRPDNVTFVRSLAEDLQRRDFTINALALR 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G+V+D GL DL R I+ +GD + R ED LR++R RF + ID
Sbjct: 127 ENGEVVDLFDGLGDLHRRLIRAVGDPNERFHEDALRMMRAVRFASKLDFV-IDQPTRTGI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L ++ ER E+ K+ +NP + G+++ QLS ++
Sbjct: 186 KANAHLLSKIAVERTRVELEKMFLGQNPPAGLKDFLETGLYRYCPGLANAH--QQLSSLL 243
Query: 251 EAEQVFEW-KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
++ + + + + + + + E + +
Sbjct: 244 VNGNGWKLANTEQVWALLAVQLGLSGREAAKFLRTWKTSNETIKQVGKIILAVNALRHQQ 303
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ L + G + ++ + + + + + + G
Sbjct: 304 VTPD--LMFKVGWPALSDANQVAAIYGWQ----RSIGDLKKQYDALPIKTARELAIDGRT 357
Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+++ G+ PG +G +L + +N + L L
Sbjct: 358 LIQEGGLKPGPALGKVLNTLVEAVVNGQLANEKAVLLERAASLK 401
>gi|254475356|ref|ZP_05088742.1| polyA polymerase family protein [Ruegeria sp. R11]
gi|214029599|gb|EEB70434.1| polyA polymerase family protein [Ruegeria sp. R11]
Length = 383
Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 119/410 (29%), Positives = 188/410 (45%), Gaps = 30/410 (7%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
+++++ W D D ++ +L G VGG VR++L+ D+D+ T + P+RV+
Sbjct: 1 MTVLRTDWLEDPDTQHVCKVLKDGGADVYFVGGCVRNALLGAGASDLDLCTNMRPERVID 60
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ + IPT I +GT+ ++ + ++ITT R D+ TDGR A V F+ K D+ RRD
Sbjct: 61 VAGAAGIRAIPTGIDHGTVTLVHKSVPYEITTFRRDVATDGRRAVVAFSDCIKEDAARRD 120
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FT+NALYA G+V+D + GL DL R ++FIG A +RI EDYLR LR+FRF A YG +
Sbjct: 121 FTMNALYARPDGEVVDPLDGLPDLVARRVRFIGTAENRIREDYLRSLRYFRFHAWYGNPD 180
Query: 182 IDSDGLVASIKAKKGL--KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ D S A LS ER+ E+ KLL A +P A+ M G+ I
Sbjct: 181 LGFDPDALSAIAGNLDGIPSLSRERVGQELVKLLAAPDPAPAVAVMRQIGLLSVILPGSD 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ +L L + +R + + +D + L + +
Sbjct: 241 DRALAPLIHLEAGM------PPEPMRRLAALGGEDPRDA------LRLSKAQANMVQLL- 287
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ L Y+Y V + + AL L + +++
Sbjct: 288 ----RTEATGSTAPAALAYMYDQSVARDAMLLRSALLEMPLPPM-------LETELNAGA 336
Query: 360 KPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ +FPLT D++ G +G L K +WI S F L ++ L L
Sbjct: 337 QAVFPLTAQDLMPDL---QGPALGVALKRLKSDWIASGFSLDKDTLLKRL 383
>gi|126724604|ref|ZP_01740447.1| polyA polymerase family protein [Rhodobacterales bacterium
HTCC2150]
gi|126705768|gb|EBA04858.1| polyA polymerase family protein [Rhodobacterales bacterium
HTCC2150]
Length = 394
Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 134/418 (32%), Positives = 197/418 (47%), Gaps = 38/418 (9%)
Query: 1 MV---SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M VQ W D I SLL ++ VGG VR++L++ V D+DIAT P+
Sbjct: 1 MTLNKGKVQGDWLSDPAAQKIFSLLLDAGYQAYAVGGCVRNALLDCPVNDVDIATNARPE 60
Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
+V+ + K IPT I +GT+ ++ F++TT R D+ TDGR A V F + D+
Sbjct: 61 QVVALAKAAGVKSIPTGIDHGTVTLLKNSTPFEVTTYRRDVETDGRRAVVAFADTIEEDA 120
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NALYA G ++D +GGL D +R + FI +A R+ EDYLRILRFFRF A Y
Sbjct: 121 RRRDFTMNALYASADGTLVDPLGGLQDCMDRRVVFIENAEARVREDYLRILRFFRFHAWY 180
Query: 178 GEK--NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G+ +D DGL A + +GL LS ER+ SEI KLL A +P A+ M GI +
Sbjct: 181 GDPAAGLDPDGLAACAELAQGLDGLSRERVTSEILKLLAAPDPAPAVAVMDQAGILTRVL 240
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
SL L + E E +R + + F L R+ +
Sbjct: 241 PGATAKSLAPLVHL---EDGLEPSA---IRRLATLGGD-------AISTFRLSRKEERAI 287
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
+ N +L+ K G V + A+ + +++I
Sbjct: 288 KERRDALENMTSLNSVAQLK-----GFDVARDVALMRAAIFETPMGE-------NWINEI 335
Query: 356 IHWKKPLFPLTGDDVVKYGIP---PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + FP++ +P G +G L K+ W++S F LS++DL LL +
Sbjct: 336 ENAARQTFPVSAA-----NLPSELQGAAIGKALAQLKKAWVDSGFNLSKQDLLRLLDE 388
>gi|149204355|ref|ZP_01881322.1| Poly A polymerase family protein [Roseovarius sp. TM1035]
gi|149142240|gb|EDM30287.1| Poly A polymerase family protein [Roseovarius sp. TM1035]
Length = 381
Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats.
Identities = 133/406 (32%), Positives = 199/406 (49%), Gaps = 30/406 (7%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
V W D + ++L + ++ VGG VR++L+ + V DIDIAT P+ VM +
Sbjct: 2 KVSGAWIEDKATQAVCAMLTEAGYQALFVGGCVRNALLEMPVGDIDIATDARPEMVMELA 61
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
+ +PT + +GTI ++ ++TT R D+ T GR+A V F D + D+ RRDFT
Sbjct: 62 HAAGLRPVPTGLEHGTITVVSGHIGHEVTTFREDVQTFGRHAVVAFANDLRTDARRRDFT 121
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181
+NALYA G V+D +GGL DLR R ++FI DA RI EDYLRILRFFRF A YG+
Sbjct: 122 MNALYAQTDGAVVDPLGGLEDLRARRVRFIEDADQRIREDYLRILRFFRFHAWYGDPEGG 181
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+D++GL A +G+ LS ER+ +E+ KLL A +P ++ M G+ +
Sbjct: 182 LDAEGLAACAGNVEGIVGLSRERVGAEMRKLLAAPDPAPSVAAMQATGVLAVVLPGSDAR 241
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+L L + E D++LR L ++A++ L R L S
Sbjct: 242 ALPLLVHL---ESETNTAPDAILRLAALGG-------EAVAERLRLSRAEARRLDSL--- 288
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ +L Y +G A L + AL N +D D+ K
Sbjct: 289 --RGAAADMMHAAELGYRHGIAEGRAILLLRAALLENTWQARDA-------EDLAKGAKA 339
Query: 362 LFPLTGDDVVKYGIPP--GKKVGNILVHCKQEWINSSFQLSQEDLH 405
FP+T D++ P G +G L ++ WI S F L+++DL
Sbjct: 340 RFPVTAADLM----PEYTGPALGERLHALERRWIESGFALTRDDLL 381
>gi|195568543|ref|XP_002102273.1| GD19587 [Drosophila simulans]
gi|194198200|gb|EDX11776.1| GD19587 [Drosophila simulans]
Length = 476
Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats.
Identities = 123/409 (30%), Positives = 209/409 (51%), Gaps = 20/409 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L ++L+L K + + I GGAVRD LM + +DID+ATT PD++ ++F K +
Sbjct: 70 IFTPELNDLLALFKKYDYELRIAGGAVRDILMGIPPKDIDLATTATPDQMKQMFEKEEVR 129
Query: 70 VIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI K+ F++TTLR D+ TDGR+A+V++T DW+ D+ RRD TIN++
Sbjct: 130 MINANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVMYTTDWQLDANRRDLTINSM 189
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSD 185
+ G V DY G +DL+ R + F+G+A RI ED+LRILR+FRF+ E N D
Sbjct: 190 FLGFDGTVYDYFYGYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGRIASEENNHDKA 249
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L A + KGL +S ERIWSE+ K++ + M+ +F+ I L +E +LD+
Sbjct: 250 TLAAIKENAKGLARISGERIWSELQKIVAGNFGPALFLEMHCCNLFEYIGLP-KEPNLDE 308
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
++ +A F+ +L ++ + + K S I+
Sbjct: 309 FDRLCKALDQFDKPHHPILYLAGMLHSVEDAMEMHKRLKLSAYERDLARFITQEREKVGL 368
Query: 306 KTLSIPEIKK-LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
++ + +K Y + + +L L++ + + W KP FP
Sbjct: 369 HYTTLRDFQKLCLQKYIQRDFVEQLL-------------KYSGKLELYNQLKSWVKPDFP 415
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G+ + ++G+ G ++G ++ K W +S FQL+ +DL + ++
Sbjct: 416 IRGNALAQHGL-NGVRIGLVMDELKLLWADSDFQLTHDDLLKKIPNVLE 463
>gi|146318483|ref|YP_001198195.1| tRNA CCA-pyrophosphorylase [Streptococcus suis 05ZYH33]
gi|146320676|ref|YP_001200387.1| tRNA CCA-pyrophosphorylase [Streptococcus suis 98HAH33]
gi|253751610|ref|YP_003024751.1| CCA-adding enzyme [Streptococcus suis SC84]
gi|253753512|ref|YP_003026653.1| CCA-adding enzyme [Streptococcus suis P1/7]
gi|253755663|ref|YP_003028803.1| CCA-adding enzyme [Streptococcus suis BM407]
gi|166233886|sp|A4W0U8|CCA_STRS2 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|166233888|sp|A4VUK6|CCA_STRSY RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|145689289|gb|ABP89795.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus suis
05ZYH33]
gi|145691482|gb|ABP91987.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus suis
98HAH33]
gi|251815899|emb|CAZ51513.1| CCA-adding enzyme [Streptococcus suis SC84]
gi|251818127|emb|CAZ55921.1| CCA-adding enzyme [Streptococcus suis BM407]
gi|251819758|emb|CAR45646.1| CCA-adding enzyme [Streptococcus suis P1/7]
gi|292558265|gb|ADE31266.1| Polynucleotide adenylyltransferase [Streptococcus suis GZ1]
gi|319758048|gb|ADV69990.1| tRNA CCA-pyrophosphorylase [Streptococcus suis JS14]
Length = 403
Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats.
Identities = 93/404 (23%), Positives = 176/404 (43%), Gaps = 18/404 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + IL + ++ VGG+VRD+++ + D+DIAT+ P +IFS + I
Sbjct: 12 EALPILEKIKAAGFEAYFVGGSVRDAILGRPIHDVDIATSSYPQETKQIFS----RTIDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ KK ++ITT R++ R ++V F R + D RRDFT+NA D+
Sbjct: 68 GIEHGTVLVLEGKKEYEITTFRTEEEYVDFRRPSQVSFVRSLEEDLKRRDFTVNAFALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ +++D G+ DL NRT++ +G R ED LRI+R FRF A I+ A +
Sbjct: 128 EAQIVDLFDGMTDLENRTLRAVGIPAERFNEDALRIMRGFRFAATLDF-EIEPTTFEAMV 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG-IFKEIFLDVQEISLDQLSQVI 250
+ L+ +S ER + E +KLL A + M + L + L+ + +
Sbjct: 187 QTAPLLEKISVERSFIEFDKLLMADFWRKGLRAMIDSKAYNFLPDLAGKSDELEAMLTSL 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
E F + V + +I S KK+ + + ++ ++ +
Sbjct: 247 TEEFRFSTSEQAWALLFVCLGID---NIKSFLKKWKTSNDFQRSVVKLVEIYQLRQAGPV 303
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y L + LH D I ++ + K + G +
Sbjct: 304 TKQICFKY------GKEFLYLVEELHQAQGFVTDFAAIDKIDQALTIHDKHEIVVNGGHL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+K + + PG +G +L + + + + ++ + ++ ++
Sbjct: 358 MKAFDLKPGPVLGELLKEVEFQIVEGQLENEEQAIMTFVKGILE 401
>gi|227510319|ref|ZP_03940368.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
gi|227189971|gb|EEI70038.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
Length = 405
Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats.
Identities = 97/399 (24%), Positives = 168/399 (42%), Gaps = 18/399 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL + ++ VGG+VRD+++ + D+DIAT+ P V +F +T
Sbjct: 16 KKALPILRKIEAAGYEAYFVGGSVRDTILQRPIHDVDIATSAYPSEVKGLFKRTA----D 71
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ I+ +++TT R++ R KV F R K D RRDFTINAL
Sbjct: 72 TGIEHGTVMILDHGTGYEVTTFRTESGYQDYRRPDKVTFVRSLKEDLKRRDFTINALALS 131
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ GK+ D GGLND+ + I+ +GD R ED LR++R RF + I+ L
Sbjct: 132 ENGKITDLFGGLNDMSKKIIRAVGDPEERFNEDALRMMRAVRFASQLDF-KIEEQTLTGI 190
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ LK ++ ERI SE K++ + N + M +++ + + +++ Q
Sbjct: 191 YDHSELLKKIAVERIHSEFVKMMLGVDAKNGLNLMIKSQLYQFVPDFSEHLTVLQKIVAT 250
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E ++ +L + + S L + + S
Sbjct: 251 HFDLDNEVQVWALFTSMFQFNRDQVISFLK-----RWKTANKIINDVILTTELIFQIKSQ 305
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
Y G + + + I +N T D+ +++ + K +TG D+
Sbjct: 306 KVGNLELYKAGKQNVKNAVTII-----SNYTDFDSAKLIKAYDQLPITTKKQLNVTGGDL 360
Query: 371 VKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+K GI PG K+G L ++ + +L
Sbjct: 361 IKRGILNPGPKLGETLGALEKAVVLGKINNQDSELIAAA 399
>gi|309804150|ref|ZP_07698228.1| tRNA adenylyltransferase [Lactobacillus iners LactinV 11V1-d]
gi|325912841|ref|ZP_08175219.1| tRNA adenylyltransferase [Lactobacillus iners UPII 60-B]
gi|308163733|gb|EFO66002.1| tRNA adenylyltransferase [Lactobacillus iners LactinV 11V1-d]
gi|325477834|gb|EGC80968.1| tRNA adenylyltransferase [Lactobacillus iners UPII 60-B]
Length = 397
Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 98/399 (24%), Positives = 172/399 (43%), Gaps = 18/399 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF K I
Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFE----KTID 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D
Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A
Sbjct: 127 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGF-ELDLDTKKAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQV 249
+ L +S ERI E K+ K+ A + + +L+ ++ L S++
Sbjct: 186 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
++ I+++ I + + + + +
Sbjct: 246 ----NFSPVTEETFWATIIILLKLPNNEIAKFMRAWKNSNAMEHCVYDIVTF------FD 295
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + + + L L ++ I+ + + + G
Sbjct: 296 LLSYRIPSNYELFSTNLDTIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGHY 355
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++K GIP G ++G +L+ K+ + + + + L
Sbjct: 356 LLKKGIPAGPRIGELLIEIKKAILERKLENNISAIDVFL 394
>gi|56551952|ref|YP_162791.1| polynucleotide adenylyltransferase [Zymomonas mobilis subsp.
mobilis ZM4]
gi|56543526|gb|AAV89680.1| Polynucleotide adenylyltransferase region [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 406
Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 138/419 (32%), Positives = 225/419 (53%), Gaps = 24/419 (5%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ KW H L +++ L VGG+VRD+L+ L V DID AT P++ M +
Sbjct: 5 LPDQKWQHQEGLSDLIKALGGDSM-IRFVGGSVRDTLLGLPVNDIDCATRHHPEKTMELI 63
Query: 64 SKTRYKVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
+K IPT I +GTI + K +IT+LR D+ TDGR+A + ++ +W+ D+ RRDF
Sbjct: 64 RSAGFKAIPTGIQHGTITALLPTKSPVEITSLRRDVSTDGRHATIAYSDNWEDDAQRRDF 123
Query: 123 TINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
TINALYA+ + V DY GGL DL+ +++FIG+ RI ED+LRILRFFRFFA +G+ N
Sbjct: 124 TINALYAEAESGLVHDYFGGLADLKAHSVRFIGNPETRIAEDHLRILRFFRFFARFGQNN 183
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
D + L A IK L LS ERI SE+ K+L +PL I M GIFK I ++
Sbjct: 184 PDPEALAACIKHANDLMALSRERIASEVLKILALPDPLAVISLMIKSGIFKPILPEITAD 243
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
S+ L +++E E+++ ++LLR L+ + + S+A++ +E + +LI+
Sbjct: 244 SILPLQRLVERERLYHLSGNALLRLAALLP-EGAEMARSVAQRLRFSKEQKKYLIALLTA 302
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ G + IA+ + + +D + ++ + +W++P
Sbjct: 303 EEEKPLSLAWA-------IGKEEAIARFLL---------SDRDEATVNSAIALLKNWERP 346
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS----QEDLHHLLRKLIASSQ 416
+FPL G D++ G+P G V IL + ++ W+ ++F S ++ + + ++
Sbjct: 347 VFPLKGGDLIAKGLPAGPLVATILQNIQKAWVEAAFPNSDWVQEKATIAIAETMATKAE 405
>gi|223932104|ref|ZP_03624108.1| Polynucleotide adenylyltransferase region [Streptococcus suis
89/1591]
gi|302023723|ref|ZP_07248934.1| tRNA CCA-pyrophosphorylase [Streptococcus suis 05HAS68]
gi|330832758|ref|YP_004401583.1| CCA-adding enzyme [Streptococcus suis ST3]
gi|223899085|gb|EEF65442.1| Polynucleotide adenylyltransferase region [Streptococcus suis
89/1591]
gi|329306981|gb|AEB81397.1| CCA-adding enzyme [Streptococcus suis ST3]
Length = 403
Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 95/404 (23%), Positives = 175/404 (43%), Gaps = 18/404 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + IL + ++ VGG+VRD+++ + D+DIAT+ P +IFS + I
Sbjct: 12 EALPILEKIKAAGYEAYFVGGSVRDAILGRPIHDVDIATSSYPQETKQIFS----RTIDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ KK ++ITT R++ R ++V F R + D RRDFT+NA D+
Sbjct: 68 GIEHGTVLVLEGKKEYEITTFRTEEEYVDFRRPSQVSFVRSLEEDLKRRDFTVNAFALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ ++ID G+ DL NRT++ +G R ED LRI+R FRF A I+ A +
Sbjct: 128 EAQIIDLFEGMTDLENRTLRAVGIPAERFNEDALRIMRGFRFAATLDF-EIEPTTFEAMV 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG-IFKEIFLDVQEISLDQLSQVI 250
K L+ +S ER + E +KLL A + M + L + L+ + +
Sbjct: 187 KTAPLLEKISVERSFIEFDKLLMADFWRKGLRAMIDSKAYNFLPDLAGKSDELETMLTSL 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
E F + V + SI S KK+ + + ++ ++ +
Sbjct: 247 TEEFRFSTSEQAWAMLFVCLGID---SIKSFLKKWKTSNDFQRSVVKLVEIYQLRQAGPV 303
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y L + L D I ++ + K + G +
Sbjct: 304 TKQICFKY------GKEFLYLVEELRQAQGLVTDFVAIDKIDQALTIHDKHEIVVNGGHL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+K + + PG +G +L + + + + ++ + ++ ++
Sbjct: 358 MKAFDLKPGPVLGELLKEVEFQIVEGQLENEEQAIMTFVKGILE 401
>gi|225868453|ref|YP_002744401.1| CCA-adding enzyme [Streptococcus equi subsp. zooepidemicus]
gi|225701729|emb|CAW99090.1| CCA-adding enzyme [Streptococcus equi subsp. zooepidemicus]
Length = 404
Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 98/400 (24%), Positives = 182/400 (45%), Gaps = 18/400 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ + + ++ VGG+VRDSL+N + D+DIA + P+ IF + I
Sbjct: 14 ALPIVKKIKQAGFEAYFVGGSVRDSLLNRPIHDVDIAASCYPEETKAIFP----RTIDVG 69
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 70 IEHGTVLVLENGSEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDED 129
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL DL+++ ++ +G R ED LRI+R FRF A +I+++ A
Sbjct: 130 GQVIDIFNGLEDLKHKLLRAVGRPQERFEEDALRIMRGFRFAASLDF-DIETETFEAMKS 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-QEISLDQLSQVIE 251
L+ +S ER + E++KLL A I+ M F + V +E +L + + +
Sbjct: 189 HAPLLEKISVERSFIELDKLLMAPKWRKGILAMIACQAFNYLPGLVGKEEALQKYLKTLA 248
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
A+ VF+ + +V++ K+ L K + + + S + ++
Sbjct: 249 ADYVFQDNHQAWAYLLVMLELDQPKAFLKAWKTSNDFQRRVTMMTSLYQIRQERQLEK-- 306
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y +G + L + I + ++ K + G ++
Sbjct: 307 ---WDIYSFGK----DLALLVEDLRQAQGLVSEVKRIEGLYQELTIHDKHDIVVNGSYLI 359
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ G+ PG ++G +L +Q + +E + +R+
Sbjct: 360 RELGMKPGPQLGMLLNQIEQAIVEGRLVNQREHIEAFVRR 399
>gi|223938798|ref|ZP_03630686.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[bacterium Ellin514]
gi|223892496|gb|EEF58969.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[bacterium Ellin514]
Length = 440
Score = 199 bits (505), Expect = 8e-49, Method: Composition-based stats.
Identities = 94/436 (21%), Positives = 175/436 (40%), Gaps = 43/436 (9%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ L + VGG VRD + +D D+AT +P++V RIF + IP
Sbjct: 7 ATELVRRLQTAGFDAYWVGGCVRDYFLGREPKDFDVATNAVPEQVERIFQ----RTIPVG 62
Query: 75 ISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132
+G + ++ + F I T R DGR+ + V D KAD+ RRDFTIN L+ D
Sbjct: 63 RKFGVLIVLEKGFEFQIATFRAESDYQDGRHPEQVTFGDPKADASRRDFTINGLFYDPVN 122
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D+VGG DL+ + ++ IG+ R ED+LR+LR RF A + I++ A +
Sbjct: 123 DVLHDWVGGEVDLKAKVLRTIGEPAERFAEDHLRLLRAVRFAAQLNFQ-IEAKTFAAMVA 181
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----------QEI 241
+K +S+ERI E+ K+ + + + G+ +++ ++
Sbjct: 182 NAPKIKTISAERIREELMKVFRPPHAARGLDLLRESGLLEQVLPEIAATITCEQTPDYHP 241
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISW-----------------------QDKKSI 278
+ V L + VL+ +
Sbjct: 242 EGSVYNHVRLMLSQLPEDASPELPWAVLLHDVAKPVTASRDPETGSIHFYGHEKVGAEMA 301
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
+ ++ PR+ +++ + K + L + + +L +
Sbjct: 302 EVLLQRLKFPRKETDEIVAAVLYHMQFKDVPNMRKSTLRRMIMRETFPLELALHRLDCLG 361
Query: 339 NLTHQD-TCFILQVLSDIIHWKKPLFP-LTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
+ D F+++ ++ + L P L G+D++ G+ PG +G +L + + +
Sbjct: 362 SHRMLDHYDFMVEQERELEKKPEILPPLLNGNDLMALGMQPGPAMGELLTELRDKQLQEE 421
Query: 397 FQLSQEDLHHLLRKLI 412
+ S E +L KL
Sbjct: 422 LKTSDEAREWVLEKLK 437
>gi|148261002|ref|YP_001235129.1| polynucleotide adenylyltransferase region [Acidiphilium cryptum
JF-5]
gi|146402683|gb|ABQ31210.1| Polynucleotide adenylyltransferase region [Acidiphilium cryptum
JF-5]
Length = 389
Score = 199 bits (505), Expect = 8e-49, Method: Composition-based stats.
Identities = 125/404 (30%), Positives = 197/404 (48%), Gaps = 24/404 (5%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
D L + ++L ++ +VGGAVRD L + DID+A+ + P+ V +K +
Sbjct: 4 DDPQLERLWTVLP----EARVVGGAVRDRLAGRPISDIDLASPLPPEAVATRLAKAGIRA 59
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+PT + +GTI + ++F+ITTLR DL TDGR+A V FT DW+ D+ RRDFTINA+
Sbjct: 60 VPTGLDHGTITAVLDGRHFEITTLRRDLETDGRHAVVAFTDDWREDAARRDFTINAMSMA 119
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G + DY GG +DL ++F+GD RI ED+LRILRFFRF A Y D + A
Sbjct: 120 RDGTIHDYFGGRDDLAAGIVRFVGDPTTRIQEDFLRILRFFRFHARYEAGPPDQAAVAAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K GL LS+ER+W EI ++L A +PL A+ M G+ + + + + L ++
Sbjct: 180 RALKGGLARLSAERVWQEIKRILAAPDPLAALNLMAETGVLQVVLPE--AAGIMALQRL- 236
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
Q D LLR LI ++ +A++ L R L +
Sbjct: 237 ---QTRGAPADPLLRVAALIGG----AVRPLARRLRLAEAERARLEAIATAPDLAADAGE 289
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
++ + + +I + + D + + + ++P+FPL G D
Sbjct: 290 AVLRHALADWPAETLIDRSWLAA----------DDADRSALRARLATMERPVFPLKGRDA 339
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
V G+ PG +G L ++ W+ + LR+ +AS
Sbjct: 340 VAIGVAPGPAIGAALAAVRRWWMAHDCLPDGDACRAELRRHLAS 383
>gi|315172315|gb|EFU16332.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX1346]
Length = 406
Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats.
Identities = 90/401 (22%), Positives = 167/401 (41%), Gaps = 16/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ + ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 11 KEAAPVIREIIAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + K + +
Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFKIEEKTLAAIA 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
KI + LL + L Q L +L +
Sbjct: 187 EFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYCPKLREQGAGLFRLMDLP 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + +LL + + + I S K + L ++ + + LS
Sbjct: 247 ARQIETEAEAWTLLIQSLNLP---EAEIRSFLKAWKLSNQLIQNVSQLVRG--LRFRLSN 301
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G++ + ++ +++ + ++ +TG D+
Sbjct: 302 DWQPVMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIHQRHELAITGKDL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PGK +G ++ +Q + S + QE L +K
Sbjct: 358 LAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 398
>gi|73985053|ref|XP_533758.2| PREDICTED: similar to tRNA nucleotidyl transferase, CCA-adding, 1
isoform 2 [Canis familiaris]
Length = 416
Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats.
Identities = 106/402 (26%), Positives = 187/402 (46%), Gaps = 29/402 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QD+D ATT P ++ +F +
Sbjct: 40 LFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDVDFATTATPAQMKDMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D++TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNKGEKHGTITARLHEENFEITTLRIDVVTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
G + DY G DL+N+ ++F+G+A RI EDYLRILR+FRF+ + D
Sbjct: 160 LGFDGTLFDYFNGYEDLKNKKVRFVGNAKQRIQEDYLRILRYFRFYGKI--IDKPGDHDP 217
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+++A + I + K + SL++ ++
Sbjct: 218 ETLEAIAENAKGLAGISGERIWV-----------------ELKKILVGLPTNSSLEEFNK 260
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
V + F K +LL + + + + + + +E + I + +
Sbjct: 261 VSKNVDGFSPKPMTLLASLFKVQDD----VTKLDLRLKISKEEKNLGIFIVKN--RKDLV 314
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ + Y D ++ ++ L +Q +L+ + W P FP++G
Sbjct: 315 KATDSSEPLKPYQDFIIDSRESDATTRVCELLKYQGEHGLLEQMQQ---WCIPPFPVSGH 371
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 372 DIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 413
>gi|312871384|ref|ZP_07731479.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 3008A-a]
gi|311093037|gb|EFQ51386.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 3008A-a]
Length = 397
Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats.
Identities = 98/399 (24%), Positives = 174/399 (43%), Gaps = 18/399 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF K I
Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFE----KTID 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D
Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A
Sbjct: 127 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGF-ELDLDTKKAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQV 249
+ L+ +S ERI E K+ K+ A + + +L+ ++ L S++
Sbjct: 186 FDNHELLRKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
++ I+++ I + + + + +
Sbjct: 246 ----NFSPVTEETFWATIIILLKLPNNEIAKFMRAWKNSNAMEHCVYDIVTF------FD 295
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + + + L L ++ I+ + + + G+
Sbjct: 296 LLSYRIPSNYELFSTNLDTIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNY 355
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++K GIP G ++G +L+ K+ + + + + L
Sbjct: 356 LLKKGIPAGPRIGELLIEIKKAILERKLENNISAIDVFL 394
>gi|229544023|ref|ZP_04433082.1| tRNA cytidylyltransferase [Bacillus coagulans 36D1]
gi|229325162|gb|EEN90838.1| tRNA cytidylyltransferase [Bacillus coagulans 36D1]
Length = 400
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 87/397 (21%), Positives = 165/397 (41%), Gaps = 16/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ L ++ VGG++RDSL+ V D+DIAT+ P+ V +F +
Sbjct: 8 ALPIIRTLEDAGFQAFFVGGSIRDSLLGRPVHDVDIATSAKPEEVKALFKH----TVDIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V + D RRDFT+NA+ D+
Sbjct: 64 IEHGTVLVLYKGNQYEITTFRTESAYKDYRRPESVEYVDSLLEDLKRRDFTMNAMAMDKN 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
GK+ID G +R + I+ +G R ED LR++R RF + G I+ A +
Sbjct: 124 GKLIDPFRGSEAIRMKRIETVGSPEERFREDALRMMRAARFTSQLGF-GIEPGTKQAIKR 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
++ ++ ERI E KLLE ++P A+ + G+ + + S +
Sbjct: 183 HAPLIRHIAVERITQEFIKLLEGEHPYEALQLLQETGLLGFL-PGLCGREAQLFSALHPV 241
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ + + + +D + L K + R+ +SFF +K +
Sbjct: 242 LNELS-EQQLWVYLVAAANPEDANAFLRKWKLPNEKRKAIVRTLSFFRMRAGRKWDPL-- 298
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ Y G++ + +F A N + + + Q + + + G ++
Sbjct: 299 ---MLYDAGEQTALDAEAVFCAFRRENPAPRISA-LRQAFQKLPVKNRSELAIDGKKLMA 354
Query: 373 YGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G + +L ++ IN + E + +
Sbjct: 355 LFSKKGGPWLKEMLREIEKALINGEIENQYEAIRRWV 391
>gi|330993897|ref|ZP_08317828.1| tRNA-nucleotidyltransferase 1 [Gluconacetobacter sp. SXCC-1]
gi|329759028|gb|EGG75541.1| tRNA-nucleotidyltransferase 1 [Gluconacetobacter sp. SXCC-1]
Length = 397
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 119/381 (31%), Positives = 188/381 (49%), Gaps = 14/381 (3%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+ +VGGAVRD L V DID+AT PD V KV+PT +++GT+ + +
Sbjct: 15 ARLVGGAVRDLLCGRGVADIDLATPHAPDVVTARLKDAGIKVVPTGLAHGTVTAVLDGRP 74
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148
F+ITTLR D TDGR+A V +T DW+ D+ RRDFTINA+ D G V DY GG DL
Sbjct: 75 FEITTLRRDEETDGRHATVAWTHDWREDAARRDFTINAMSCDSAGVVHDYFGGRADLAAG 134
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208
++F+G+A RI+ED LRILRFFRF A YG+ D++ + A + LS ERIWSE
Sbjct: 135 RVRFVGEARTRIVEDALRILRFFRFQARYGQSTPDAEAMAAITALAGLIDRLSVERIWSE 194
Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
+ ++L + + + M G+ + I L L+++I D++LR
Sbjct: 195 LRRILAGPHVIVTLEQMAGCGVLAHVLPPPWNIGL--LARLI----ACGAPEDAVLRLAA 248
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + ++A+ L R L + + +I +L +G + ++ +
Sbjct: 249 MLEGD----VQAVARHLRLSRADGAALAQARATPVPRPGMDKADIARLLADHGLRDLLWR 304
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
+ A + ++ KP+FPLTG D++ G PG +G +L
Sbjct: 305 AWLGQAAAVGAPDPA----WDALRGVLVATAKPVFPLTGRDLLAAGCVPGAAMGQVLAQV 360
Query: 389 KQEWINSSFQLSQEDLHHLLR 409
++ W+ + + +R
Sbjct: 361 RRWWLENGCTPTHAACQAHMR 381
>gi|260752500|ref|YP_003225393.1| polynucleotide adenylyltransferase region [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|258551863|gb|ACV74809.1| Polynucleotide adenylyltransferase region [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 406
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 138/419 (32%), Positives = 225/419 (53%), Gaps = 24/419 (5%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ KW H L +++ L VGG+VRD+L+ L V DID AT P++ M +
Sbjct: 5 LPDQKWQHQEGLSDLIKALGGDSM-IRFVGGSVRDTLLGLPVNDIDCATRHHPEKTMELI 63
Query: 64 SKTRYKVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
+K IPT I +GTI + K +IT+LR D+ TDGR+A + ++ +W+ D+ RRDF
Sbjct: 64 RSAGFKAIPTGIQHGTITALLPTKSPVEITSLRRDVSTDGRHATIAYSDNWEDDAQRRDF 123
Query: 123 TINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
TINALYA+ + V DY GGL DL+ +++FIG+ RI ED+LRILRFFRFFA +G+ N
Sbjct: 124 TINALYAEAESGLVHDYFGGLADLKAHSVRFIGNPETRIAEDHLRILRFFRFFARFGQNN 183
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
D + L A IK L LS ERI SE+ K+L +PL I M GIFK I ++
Sbjct: 184 PDPEALAACIKRANDLMALSRERIASEVLKILALPDPLAVISLMIKSGIFKPILPEITAD 243
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
S+ L +++E E+++ ++LLR L+ + + S+A++ +E + +LI+
Sbjct: 244 SILPLQRLVERERLYHLSGNALLRLAALLP-EGAEMARSVAQRLRFSKEQKKYLIALLTA 302
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ G + IA+ + + +D + ++ + +W++P
Sbjct: 303 EEEKPLSLAWA-------IGKEEAIARFLL---------SDRDEATVNSAIALLKNWERP 346
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS----QEDLHHLLRKLIASSQ 416
+FPL G D++ G+P G V IL + ++ W+ ++F S ++ + + ++
Sbjct: 347 VFPLKGGDLIAKGLPAGPLVATILQNIQKAWVEAAFPNSDWVQEKATIAIAETMATKAE 405
>gi|326404402|ref|YP_004284484.1| CCA-adding enzyme [Acidiphilium multivorum AIU301]
gi|325051264|dbj|BAJ81602.1| CCA-adding enzyme [Acidiphilium multivorum AIU301]
Length = 403
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 125/404 (30%), Positives = 197/404 (48%), Gaps = 24/404 (5%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
D L + ++L ++ +VGGAVRD L + DID+A+ + P+ V +K +
Sbjct: 18 DDPQLERLWTVLP----EARVVGGAVRDRLAGRPISDIDLASPLPPEAVATRLAKAGIRA 73
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+PT + +GTI + ++F+ITTLR DL TDGR+A V FT DW+ D+ RRDFTINA+
Sbjct: 74 VPTGLDHGTITAVLDGRHFEITTLRRDLETDGRHAVVAFTDDWREDAARRDFTINAMSMA 133
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G + DY GG +DL ++F+GD RI ED+LRILRFFRF A Y D + A
Sbjct: 134 RDGTIHDYFGGRDDLAAGIVRFVGDPTTRIQEDFLRILRFFRFHARYEAGPPDQAAVAAI 193
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K GL LS+ER+W EI ++L A +PL A+ M G+ + + + + L ++
Sbjct: 194 RALKGGLARLSAERVWQEIKRILAAPDPLAALNLMAETGVLQVVLPE--AAGIMALQRL- 250
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
Q D LLR LI ++ +A++ L R L +
Sbjct: 251 ---QTRGAPADPLLRVAALIGG----AVRPLARRLRLAEAERARLEAIGTAPDLAADAGE 303
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
++ + + +I + + D + + + ++P+FPL G D
Sbjct: 304 AVLRHALADWPAETLIDRSWLAA----------DDADRSALRARLATMERPVFPLKGRDA 353
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
V G+ PG +G L ++ W+ + LR+ +AS
Sbjct: 354 VAIGVAPGPAIGAALAAVRRWWMAHDCLPDGDACRAELRRHLAS 397
>gi|225870622|ref|YP_002746569.1| CCA-adding enzyme [Streptococcus equi subsp. equi 4047]
gi|225700026|emb|CAW94050.1| CCA-adding enzyme [Streptococcus equi subsp. equi 4047]
Length = 404
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 97/400 (24%), Positives = 182/400 (45%), Gaps = 18/400 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ + + ++ VGG+VRDSL+N + D+DIA + P+ IF + I
Sbjct: 14 ALPIVKKIKQAGFEAYFVGGSVRDSLLNRPIHDVDIAASCYPEETKAIF----LRTIDVG 69
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 70 IEHGTVLVLENGSEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDED 129
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL DL+++ ++ +G R ED LRI+R FRF A +I+++ A
Sbjct: 130 GQVIDIFNGLEDLKHKLLRAVGRPQERFEEDALRIMRGFRFAASLDF-DIEAETFEAMKS 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-QEISLDQLSQVIE 251
L+ +S ER + E++KLL A I+ M F + V +E +L + + +
Sbjct: 189 HAPLLEKISIERSFIELDKLLMAPKWRKGILAMVACQAFNYLPGLVGKEEALQKYLKTLA 248
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
A+ VF+ + +V++ K+ L K + + + S + ++
Sbjct: 249 ADYVFQDNHQAWAYLLVMLELDQPKAFLKAWKTSNDFQRRVTMMASLYQIRQERQLEK-- 306
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y +G + L + + + ++ K + G ++
Sbjct: 307 ---WDIYSFGK----DLALLVDDLRQAQGLVSEAKRVESLYQELTIHDKHDIVVNGSYLI 359
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ G+ PG ++G +L +Q + +E + +R+
Sbjct: 360 RELGMKPGPQLGMLLNQIEQAIVEGRLVNQREHIEAFVRR 399
>gi|288905503|ref|YP_003430725.1| tRNA nucleotidyltransferase [Streptococcus gallolyticus UCN34]
gi|288732229|emb|CBI13794.1| tRNA nucleotidyltransferase [Streptococcus gallolyticus UCN34]
Length = 401
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 98/400 (24%), Positives = 172/400 (43%), Gaps = 16/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF + +
Sbjct: 12 EALPILKKIREAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKGIFH----RTVDI 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ITT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 68 GIEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID GL DL + ++ +G+ R ED LRI+R FRF A +I+ D A
Sbjct: 128 TGLIIDKFNGLADLEAKLLRAVGNPAERFNEDALRIMRGFRFAASLDF-DIEPDTFAAMA 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ER + E +KLL A I M K L E + D L Q+++
Sbjct: 187 AHAPLLEKISVERSFIEFDKLLMAPFWRKGIKAMITSQAQKY--LPYLENAHDNLQQLLD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
S + L+ D K + K + + + + + +
Sbjct: 245 DLACDYHFKTSEQAWSALLLALDVKDVRVFLKAWKTSSQFQKDVEKIVAIYRFRLENELD 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
++ Y YG ++ L D I ++ ++ K + G ++
Sbjct: 305 KM--EMYRYGSC----LIEQAEDLRAGFGLPVDFERIERLDKELTIHDKHEIVINGGVLI 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
K PG ++G +L +++ + +E + +RK
Sbjct: 359 KELQYKPGPELGRVLKEIEEKIVLGELANDKEAIFDFIRK 398
>gi|328707317|ref|XP_003243360.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial-like
[Acyrthosiphon pisum]
Length = 458
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 124/405 (30%), Positives = 203/405 (50%), Gaps = 15/405 (3%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ L +L + +K + + + GGAVRD L+ + D+D ATT PD ++ +
Sbjct: 51 FIFSPQLTTVLQVFDKYKYEIRLCGGAVRDILLRKTPTDLDFATTATPDEMVEMMENENI 110
Query: 69 KVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+++ + +GT+ F++TTLR D++TDGR+A V +T+DW D+ RRD T+N++
Sbjct: 111 RIVNKGGLKHGTVTTHVDGVNFELTTLRIDVVTDGRHADVEYTKDWLLDAGRRDLTVNSM 170
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSD 185
+ G + DY GG DL+ R IKF+GD RI EDYLRILR+FRF+ D
Sbjct: 171 FLGMDGTIYDYFGGYEDLKKRQIKFVGDPKLRITEDYLRILRYFRFYGRLATAPNLHDEY 230
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L A + GLK +S ERIWSE+ K+LE + I + N G+ I L ++D+
Sbjct: 231 ILEAIREKGSGLKNISGERIWSELYKILEGNYASDIIKTLLNLGLGPYIGLP-DHPNIDE 289
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+VI + + ++L + QD + + K R++ FLI + +
Sbjct: 290 FDKVINRSKGLKLLPITMLTPFLK-DVQDMIELNNRLKFRVFDRDLGLFLIESRDEKWTP 348
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
T+ +IK + VM ++ L + + + +L + W FP+
Sbjct: 349 DTIKTNKIKIIQNPTKQGVMKVYIEQLLMYNNDRI----------ILEEFQKWTPLKFPI 398
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
TG+ + +G+ GKK+G IL + W + FQ E+L +L+ K
Sbjct: 399 TGNMIKNHGVQDGKKIGIILRKLIEYWADDDFQTDIEELLNLIPK 443
>gi|331092511|ref|ZP_08341333.1| hypothetical protein HMPREF9477_01976 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330400732|gb|EGG80335.1| hypothetical protein HMPREF9477_01976 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 444
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 101/438 (23%), Positives = 179/438 (40%), Gaps = 48/438 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ L ++ VGG VRDS++ +D DI T+ LP+ +F + T
Sbjct: 9 VKKIIHTLKSHGYEAYAVGGCVRDSILGREPEDWDITTSALPEETKALFE----RTFDTG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
I +GTI ++ K+ F++TT R D + R+ K FTR + D LRRDFTINA+ +++
Sbjct: 65 IEHGTITVLMGKEGFEVTTYRIDGKYEDNRHPKQVTFTRCLREDLLRRDFTINAMAYNEE 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D GG+ DL+ I+ +G+A R ED LRILR RF A G +
Sbjct: 125 EGIVDIFGGMEDLKEGVIRCVGNAKERFGEDALRILRAVRFSAQLGFSIEEETKAGIVAL 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
A +I + + L+ I Y GI K I + E+ +
Sbjct: 185 APTLQQISAERIQVELVKMLVSPNPER--IRLAYELGITKVILPEFDEMMNTEQETPHHM 242
Query: 253 EQVFEWKI--------DSLLRFIVLISWQDKKS----------------------ILSMA 282
V E I D +LR +L+ K + ++
Sbjct: 243 YTVGEHTIKALTIIRADKILRLTMLLHDVGKPMMKTVDRDGVAHFKYHDVEGEKIVRNIL 302
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
K+ + + + + +++ L G+ + LK+ +A +
Sbjct: 303 KRLKFDNDTLRKVAKLVKYHDYRMPARTKNVRRAVNLIGEDLFPFYLKVRMADTLAQSEY 362
Query: 343 QDTCFILQV------LSDIIHW----KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
Q T + + +I +TG+D+++ G+ PGK++G +L Q
Sbjct: 363 QRTEKLANLDGIRDCFEEIQEKGQCVSLKTLAVTGNDLIQLGMKPGKEIGEMLNTLLQLV 422
Query: 393 INSSFQLSQEDLHHLLRK 410
+++ ++E L +++
Sbjct: 423 LDNPEYNNEEMLKLYVKE 440
>gi|323351652|ref|ZP_08087306.1| polyA polymerase family protein [Streptococcus sanguinis VMC66]
gi|322122138|gb|EFX93864.1| polyA polymerase family protein [Streptococcus sanguinis VMC66]
Length = 399
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 101/400 (25%), Positives = 177/400 (44%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNHEYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL+DL NR ++ +G A R ED LRI+R FRF A +++ D A
Sbjct: 128 NGQVIDLFQGLDDLENRILQAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFAAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + G FL + S +L ++ +
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGA--IEFLPDLKGSRAKLERLFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + + L+ D +++ KK+ RE + + +
Sbjct: 245 LASDFRFSASE-QAWSALLLALDVQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLIQAEELREAQGLAVDFSAIQNLDASLTIHSKQEMVVNGGMLM 357
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ +G PG K+G IL + ++ E ++ + +
Sbjct: 358 QDFGFKPGPKLGQILKELEYAIVDGHLPNKLEAIYAYIEE 397
>gi|332029561|gb|EGI69450.1| tRNA-nucleotidyltransferase 1, mitochondrial [Acromyrmex
echinatior]
Length = 463
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 118/413 (28%), Positives = 205/413 (49%), Gaps = 18/413 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L + SL K K I GGAVRD LM +D+D AT P ++ +F+ +
Sbjct: 45 IFTPELEKLASLFKKYSYKLRIAGGAVRDILMGKQPKDLDFATDATPQQMKDMFTSEEIR 104
Query: 70 VI-PTSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI + F++TTLR D++T+GR+A+V FT+DWK D+ RRD TIN++
Sbjct: 105 MINEKGEKHGTITARINDMENFEVTTLRIDVLTNGRHAQVEFTKDWKLDANRRDLTINSM 164
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSD 185
+ D G+V DY G +DL+ + + F+G A RI EDYLRILR+FRF+ D
Sbjct: 165 FLDLDGRVYDYFYGYDDLKKKRVVFVGKASIRIQEDYLRILRYFRFYGRIMDSPNQHDEA 224
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA-IVHMYNGGIFKEIFLDVQEISLD 244
++A + GL+ +S ERIWSE NK+L L + + G + E ++
Sbjct: 225 TIIALKENIGGLEQISGERIWSEWNKILSGTFALELTLKLLECGSSRYIGLPE--EPDVE 282
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
++ E Q + + + ++ +D+ ++ + ++ L R I
Sbjct: 283 NFRKIYERAQSNNVTLKPISLIVSML--KDEYEVIKLHERLKLSNSDRDLAIFLVQNREC 340
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
+ +K Y V++ ++K + L + +Q+L + W P FP
Sbjct: 341 KP------CEKPLKPYQQLVLLQQIKRYDVLKEDVKELLRYRGAIQLLDEFEQWVIPKFP 394
Query: 365 LTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ G+ ++KY + K +G++L+ K+ WI++ F+L+ E L + +++ +
Sbjct: 395 INGNMLIKYVTMK--KMIGSVLIELKRIWIDTDFKLTNEQLMEHVSSIVSELE 445
>gi|241761961|ref|ZP_04760046.1| Polynucleotide adenylyltransferase region [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|241373641|gb|EER63213.1| Polynucleotide adenylyltransferase region [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 406
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 138/419 (32%), Positives = 225/419 (53%), Gaps = 24/419 (5%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ KW H L +++ L VGG+VRD+L+ L V DID AT P++ M +
Sbjct: 5 LPDQKWQHQEGLSDLIKALGGDSM-IRFVGGSVRDTLLGLPVNDIDCATRHHPEKTMELI 63
Query: 64 SKTRYKVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
+K IPT I +GTI + K +IT+LR D+ TDGR+A + ++ +W+ D+ RRDF
Sbjct: 64 RSAGFKAIPTGIQHGTITALLPTKSPVEITSLRRDVSTDGRHATIAYSDNWEDDAQRRDF 123
Query: 123 TINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
TINALYA+ + V DY GGL DL+ +++FIG+ RI ED+LRILRFFRFFA +G+ N
Sbjct: 124 TINALYAEAESGLVHDYFGGLADLKAHSVRFIGNPETRIAEDHLRILRFFRFFARFGQNN 183
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
D + L A IK L LS ERI SE+ K+L +PL I M GIFK I ++
Sbjct: 184 PDPEALAACIKRANDLMALSRERIASEVLKILALPDPLAVISLMIKSGIFKPILPEITAD 243
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
S+ L +++E E+++ ++LLR L+ + + S+A++ +E + +LI+
Sbjct: 244 SILPLQRLVERERLYHISGNALLRLAALLP-EGAEMARSVAQRLRFSKEQKKYLIALLTA 302
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ G + IA+ + + +D + ++ + +W++P
Sbjct: 303 EEEKPLSLAWA-------IGKEEAIARFLL---------SDRDEATVNSAIALLKNWERP 346
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS----QEDLHHLLRKLIASSQ 416
+FPL G D++ G+P G V IL + ++ W+ ++F S ++ + + ++
Sbjct: 347 VFPLKGGDLIAKGLPAGPLVATILQNIQKAWVEAAFPNSDWVQEKATIAIAETMATKAE 405
>gi|325479731|gb|EGC82821.1| tRNA adenylyltransferase [Anaerococcus prevotii ACS-065-V-Col13]
Length = 451
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 112/434 (25%), Positives = 182/434 (41%), Gaps = 43/434 (9%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I L + VGG VRDS++ ++DID+ T PD + +FS K+I
Sbjct: 11 EEITKRLEAKGYPTYPVGGCVRDSILGRKIKDIDLTTLARPDEIKEVFSNE--KLIDIGR 68
Query: 76 SYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133
+GTIK+I + + F+ITT RSD DGR+ + F+ + D RRDFTINA+ + +G
Sbjct: 69 KFGTIKVISKGEEFEITTFRSDGKYLDGRHPDEISFSDNLIDDLKRRDFTINAMAYE-KG 127
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
K+ID G DL + ++ +G+ + RI EDYLR LR RF G ID D A +
Sbjct: 128 KIIDPFSGRCDLEKKVVRAVGNPYERIEEDYLRSLRAVRFATRLGF-EIDRDLKKAIREN 186
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
+ ++S ERI EI+K+L P I + + +IF ++
Sbjct: 187 STNINLISKERIRDEISKILIEDKPSRGIRLLDELCLLDKIFPELARTKGFDQHSSHHNL 246
Query: 254 QVFEWKI--------DSLLRFIVLISWQDKKS----------------------ILSMAK 283
V+E + D + R L K + K
Sbjct: 247 DVYEHSLKVVDRTDSDLVTRMAALYHDVGKVGTFFLDENGEGRFFGHQNLSEKLLEKRLK 306
Query: 284 KFSLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
P++ S + + T + I+KL G+ + + A +
Sbjct: 307 DLRFPKKFIEDAKSLVKRHMDCSNTYTKKSIRKLLRRIGEANLRRLFNLQRADILATVHR 366
Query: 343 Q------DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
+ +VL D K+ + G+D++ G GK +G+IL ++ I+
Sbjct: 367 DTSNIDLGESILEEVLEDNTPKKRSDLAINGNDLIDLGYHEGKIIGDILNKIEEAIIDDK 426
Query: 397 FQLSQEDLHHLLRK 410
+ ++ED+ +RK
Sbjct: 427 LENNREDILAFVRK 440
>gi|225026631|ref|ZP_03715823.1| hypothetical protein EUBHAL_00882 [Eubacterium hallii DSM 3353]
gi|224956001|gb|EEG37210.1| hypothetical protein EUBHAL_00882 [Eubacterium hallii DSM 3353]
Length = 450
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 87/450 (19%), Positives = 165/450 (36%), Gaps = 52/450 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L+ ++ +VGG VRDS++ D DI T+ LP++V +F + I
Sbjct: 7 KHASDIIKTLSAHGYEAYVVGGCVRDSILGKEPADWDITTSALPEQVKALFP----RTID 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T + +GT+ I+ K +++TT R R +V FT D K D +RRDFTINA+ +
Sbjct: 63 TGLKHGTVTIMMDKVGYEVTTYRIDGTYEDHRRPNEVTFTSDLKEDLMRRDFTINAMAYN 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++ ++D GG+ DL +R I+ +G+ R ED LR+LR RF K ++
Sbjct: 123 EEQGLVDLFGGIQDLTDRIIRCVGNPAERFDEDALRMLRAVRFAGQLNFKIEENTKAAIE 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ + + + L+ I Y G+ + + +
Sbjct: 183 AQHTFLKDVSAERIQTELMKLLVSGHP--EMIRAAYETGLTSVFLPEFDRMMETPQNNPH 240
Query: 251 EAEQVFEWK--------IDSLLRFIVLISWQDKKSILSM--------------------- 281
V + + +LR +L+ K +
Sbjct: 241 HIYSVGDHTVHAVETIAPNPVLRLTMLLHDIAKPETRTTDENGIDHFYNHNAVGADLAKA 300
Query: 282 -AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
K+ + + + + + + + +K +V + L + ++
Sbjct: 301 ALKRLKFDNQTTHMVTTLIANHDIRFNDPLGTGRKHVRKIIHRVGVDLFPYLLDVMEADI 360
Query: 341 T--------------HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386
+ + ++L+ + G+ + GI GK +G IL
Sbjct: 361 SAQSDFMRLKKLTALKETREAYREILTANDCLTLKDLKINGNQLKALGISEGKMIGAILN 420
Query: 387 HCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ +N+ E L L K+ Q
Sbjct: 421 ALLAQVLNNPELNEYEKLEELALKIYQEVQ 450
>gi|24379353|ref|NP_721308.1| tRNA CCA-pyrophosphorylase [Streptococcus mutans UA159]
gi|73619869|sp|Q8DUL8|CCA_STRMU RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|24377279|gb|AAN58614.1|AE014931_7 putative poly(A) polymerase [Streptococcus mutans UA159]
Length = 401
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 85/400 (21%), Positives = 174/400 (43%), Gaps = 16/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD L+ + D+DIA++ P+ +IF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDVLLGHPIHDVDIASSSYPEETKKIFP----RTVDI 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ +++TT R++ + R ++V F R + D RRDFTINA D+
Sbjct: 68 GIEHGTVLVLENGHDYEVTTFRTEDLYVDYRRPSQVSFVRSLEEDLKRRDFTINAFALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ +ID GL DL + ++ +G+A R ED LRI+R RF A +I+ +A
Sbjct: 128 KANIIDKFNGLVDLEQKILRAVGNAAERFNEDALRIMRGLRFAAQLNF-DIEKKTFIAMR 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L+ +S ER + E +KLL A I + + + +Q + + +
Sbjct: 187 EHAPLLEKISVERSFIEFDKLLRAPYWRKGINCLIASQAYDYL-PLLQSTADKWQQLLTD 245
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ F + + ++ + + ++ S K + + + + ++ I
Sbjct: 246 LPEDFTFSTSE-QAWAAVLLYLNVENPRSFLKSWKTSNDFQKTVEKLLAIYRLREDRQIK 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y ++ +L+ L D I ++ + K + G D++
Sbjct: 305 KTDVYQYSATLLTLVEELRQAQGLAV------DFEHIKELDEALTIHDKHEIVVKGGDLM 358
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG +G IL + + + ++ + +RK
Sbjct: 359 AAFDLKPGPDLGKILNQIESFIVAGNLANERQAILDFVRK 398
>gi|227890771|ref|ZP_04008576.1| tRNA CCA-pyrophosphorylase [Lactobacillus salivarius ATCC 11741]
gi|227867180|gb|EEJ74601.1| tRNA CCA-pyrophosphorylase [Lactobacillus salivarius ATCC 11741]
Length = 404
Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats.
Identities = 102/407 (25%), Positives = 183/407 (44%), Gaps = 18/407 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL + + ++ VGG+VRD+L+ L + D+DIA++ P+ + +IFS K +
Sbjct: 11 KKALPILEKIREVGFEAYFVGGSVRDTLLGLPIHDVDIASSAYPEEIKQIFS----KTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++ ++ITT R++ R KV F R + D RRD TINAL D
Sbjct: 67 TGVEHGTVMVLDHGTGYEITTFRTESTYQDYRRPDKVEFVRSLEEDLKRRDLTINALAMD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+GK+ID GL DL+N I+ +G+ R ED LR++R RF + ++ D A
Sbjct: 127 DKGKIIDLFDGLKDLKNGIIRAVGNPEERFHEDALRMMRAVRFGSQLDF-KVELDTFNAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAI-VHMYNGGIFKEIFLDVQEISLDQLSQV 249
K L+ ++ ERI E KLL KNP + + + L + +
Sbjct: 186 KKNSHLLEKIAIERIHVEWVKLLLGKNPKQGLQEFLDTELYKYCPLFADKYAELKSILEF 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ + E + +LL + + D ++L + I ++I+ C K
Sbjct: 246 SDFKLNTEEECWTLLSDVFKLKDTDISNLLR---SWKSSNNIIKYVIAASLCVQKIKDSK 302
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + +Y G ++++ +I + D + + + + G D
Sbjct: 303 L--DIETYYQNGIEIILTANQIAKIRGFGM----DDNELKINYDKLPIKSRKEMKINGKD 356
Query: 370 V-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ + G+ PGK +G IL ++E + + +E L +KL+
Sbjct: 357 LVQEAGVKPGKIMGEILNKLEKEIVFGNIINDKEILIENAKKLLEEK 403
>gi|309360831|emb|CAP30493.2| hypothetical protein CBG_11474 [Caenorhabditis briggsae AF16]
Length = 433
Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 120/418 (28%), Positives = 202/418 (48%), Gaps = 17/418 (4%)
Query: 1 MVSIVQHKW--FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58
++ I + L+ + L K + I GGAVRD LMN+ D+D A+T P +
Sbjct: 8 LMKIDNEDFRALFTPQLLKLRDLFAKRNYELRIAGGAVRDLLMNIRPADVDFASTATPTQ 67
Query: 59 VMRIFSKTRYKV-IPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKAD 116
+ +F + ++ +GTI K+ F+ITTLR D++ DGR AKV +T DW+ D
Sbjct: 68 MKEMFEQENIRMLHKRGEEHGTITCRIDEKENFEITTLRIDVVCDGRRAKVEYTTDWQLD 127
Query: 117 SLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
+ RRD TIN+L+ D G V+DY GG+ D+ R + F+GDA RI EDYLRILR+FRFF
Sbjct: 128 ANRRDLTINSLFLDLHGNVVDYFGGIGDIETRRVAFVGDARQRIQEDYLRILRYFRFFGR 187
Query: 177 YGE-KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ ++D + A I K G+ +S+ERIW+E+ K++ + + + M ++
Sbjct: 188 ISNSPDHEADTIQAIIDNKDGMSGISAERIWTELKKIVIGRMADDVVKAMIEQCELQKYL 247
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+E ++ + Q+ + F ++ + L + + K S
Sbjct: 248 GLPEECNITRFRQIF---KRFPKSVEPMTMVASLCEGVKQIAQFHKITKLSNDERFLGEF 304
Query: 296 ISFFN----CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
I N N I + L G + + +L++ L ++ D +
Sbjct: 305 ILREREAALENMNNDDWWIDRMVDLEVRPGHENLPDRLRLRLVQLARSVLADD-----ER 359
Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ + + P FP+TG D+++ G+ G V N+L++ + W S F ++E+L R
Sbjct: 360 IEMLQKFTPPQFPITGRDLMEAGVRKGPGVKNVLIYLYELWKTSRFTSTKEELLERAR 417
>gi|290580645|ref|YP_003485037.1| putative poly(A) polymerase [Streptococcus mutans NN2025]
gi|254997544|dbj|BAH88145.1| putative poly(A) polymerase [Streptococcus mutans NN2025]
Length = 401
Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 85/400 (21%), Positives = 174/400 (43%), Gaps = 16/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD L+ + D+DIA++ P+ +IF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDVLLGHPIHDVDIASSSYPEETKKIFP----RTVDI 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ +++TT R++ + R ++V F R + D RRDFTINA D+
Sbjct: 68 GIEHGTVLVLENGHDYEVTTFRTEDLYVDYRRPSQVSFVRSLEEDLKRRDFTINAFALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ +ID GL DL + ++ +G+A R ED LRI+R RF A +I+ +A
Sbjct: 128 KANIIDKFNGLVDLEQKILRAVGNAAERFNEDALRIMRGLRFAAQLNF-DIEKKTFIAMR 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L+ +S ER + E +KLL A I + + + +Q + + +
Sbjct: 187 EHAPLLEKISVERSFIEFDKLLRAPYWRKGINCLIASQAYDYL-PLLQSTADKWQQLLTD 245
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ F + + ++ + + ++ S K + + + + ++ I
Sbjct: 246 LPEDFTFSTSE-QAWAAVLLYLNIENPRSFLKSWKTSNDFQKTVEKLLAIYRLREDRQIK 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y ++ +L+ L D I ++ + K + G D++
Sbjct: 305 KTDVYQYSATLLTLVEELRQAQGLAV------DFEHIKELDEALTIHDKHEIVVKGGDLM 358
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG +G IL + + + ++ + +RK
Sbjct: 359 AAFDLKPGPDLGKILNQIESFIVAGNLANERQAILDFVRK 398
>gi|83950749|ref|ZP_00959482.1| Poly A polymerase family protein [Roseovarius nubinhibens ISM]
gi|83838648|gb|EAP77944.1| Poly A polymerase family protein [Roseovarius nubinhibens ISM]
Length = 378
Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 121/402 (30%), Positives = 189/402 (47%), Gaps = 27/402 (6%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
++ W + L +L++L + IVGGAVR+++M L V D+DIAT P RVM +
Sbjct: 3 IEGDWLDAAPLRAVLAMLEAAGHRGLIVGGAVRNAVMGLPVTDMDIATDARPKRVMALAE 62
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ +PT + +GT+ ++ ++ F+ITT R D DGR+AKV FT D D+ RRDFT+
Sbjct: 63 AAGLRAVPTGLDHGTVTVVSGEEPFEITTFRRDEEADGRHAKVAFTDDLAEDARRRDFTM 122
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
NALYA G VID V G+ D R ++FI DA RI EDYLRILRFFRF A YG +D
Sbjct: 123 NALYAQGDGTVIDPVDGVADARAGRVRFIEDAGRRIEEDYLRILRFFRFNAIYGRDGLDP 182
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ L A + GL+ L+ ER+ +E+ KLL A P ++ M G+ + ++
Sbjct: 183 EALAAIAEHLDGLERLARERVGAEMRKLLAAPEPSMSLAAMAQCGVLMRVLPGADVSAVP 242
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
L + + + + + + R + +
Sbjct: 243 VLVALE---------------THAGAPPEAMRRLALIGGEEVEDRLRLSKNETSVLRRYR 287
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
++ + L Y +G + + + +AL +D + I P
Sbjct: 288 DGIAAVDDPATLGYRHGAEAARDIVLLRMAL--GLPQPEDWP------AQIRRGAGARCP 339
Query: 365 LTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+T D++ +Y G +G L + WI S F ++EDL
Sbjct: 340 VTARDLMPEY---EGAALGAKLKEIEARWIASGFTKTKEDLL 378
>gi|195502087|ref|XP_002098069.1| GE24143 [Drosophila yakuba]
gi|194184170|gb|EDW97781.1| GE24143 [Drosophila yakuba]
Length = 477
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 124/408 (30%), Positives = 214/408 (52%), Gaps = 18/408 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L +++L K + + I GGAVRD LM ++ +DID+ATT P+++ ++F K +
Sbjct: 71 IFTPELNELVALFKKYDYELRIAGGAVRDILMGIAPKDIDLATTATPEQMKQMFEKEEVR 130
Query: 70 VIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI K+ F++TTLR D+ TDGR+A+V++T DW+ D+ RRD TIN++
Sbjct: 131 MINANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVMYTTDWQLDANRRDLTINSM 190
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSD 185
+ G V DY +DL+ R + F+G+A RI ED+LRILR+FRF+ E N D
Sbjct: 191 FLGFDGTVYDYFYAYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGRIASEESNHDKA 250
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L A + KGL +S ERIWSE+ K++ + M+ +F+ I L +E L++
Sbjct: 251 TLEAIKENAKGLTRISGERIWSELQKIVVGNFGPALFLQMHRCELFEYIGLP-KEPYLNE 309
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
++ +A FE +L ++ + + + M K+ L R ++ F +
Sbjct: 310 FDRLCKALDQFEKPHHPILYLTGMLHSVE--NAMEMHKRLKLSAYER--DLARFITQERE 365
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
K S + + + I + + L Y+ L++ + + W KP FP+
Sbjct: 366 KVDSQYTTLRHYQKLCLQKYIQRDFVEQLLKYSGK--------LELYNQLKSWVKPDFPI 417
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
G+ + ++G+ G ++G ++ K W +S FQL+ +DL + ++
Sbjct: 418 RGNALAQHGL-NGVRLGLVMDELKLLWADSDFQLTHDDLLKKIPNVLE 464
>gi|324991235|gb|EGC23169.1| polyA polymerase family protein [Streptococcus sanguinis SK353]
gi|325687387|gb|EGD29408.1| polyA polymerase family protein [Streptococcus sanguinis SK72]
Length = 399
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 101/400 (25%), Positives = 179/400 (44%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL+DL N+ ++ +G A R ED LRI+R FRF A +++ D VA
Sbjct: 128 NGQVIDLFQGLDDLENQILRAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFVAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + G FL + S +L ++ +
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGA--IEFLPDLKGSRAKLERLFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + + L+ D +++ KK+ RE + + +
Sbjct: 245 LASDFFFSASE-QAWAALLLALDVQNVKDFLKKWKTSREFANKVQDLVEIAAIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLLQAEELRQAQGLAVDFSAIQNLDASLTIHNKQEMVVNGGMLM 357
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ +G PG K+G IL + ++ E ++ + +
Sbjct: 358 QVFGFEPGPKLGQILKELEYAIVDGRLPNELEAIYAYIEE 397
>gi|293570256|ref|ZP_06681325.1| cca-adding enzyme [Enterococcus faecium E980]
gi|291609663|gb|EFF38924.1| cca-adding enzyme [Enterococcus faecium E980]
Length = 402
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 87/399 (21%), Positives = 162/399 (40%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F K I
Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFP----KTIDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F R + D RRDFTINA +
Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLEEDLKRRDFTINAFALKED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G+ H R ED LR++R RF + G ++ + A +
Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGF-KLEEETFYAIKE 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ L +S ERI E K+L I + ++E + L + E
Sbjct: 188 NHELLSKISVERINVEFIKMLLGNERSAGIHA-FIETECYICCPGLREEG-EALLRFAEL 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
V + ++ + I S K + ++ + + ++T +
Sbjct: 246 PSVPLKEESQAWTLLISQLDLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRETGVLEP 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G + + ++ + + + + G +++
Sbjct: 306 F--ELYFLGKEHALQVEELMTYFDETP----QMDVVEESYDRLPIKSLSELAVDGKILLE 359
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G PGK V L ++ + + ++ + L K
Sbjct: 360 ESGKKPGKWVSEALQSAEKAVVEQRIENDKKQVLDFLSK 398
>gi|262282317|ref|ZP_06060085.1| tRNA CCA-pyrophosphorylase [Streptococcus sp. 2_1_36FAA]
gi|262261608|gb|EEY80306.1| tRNA CCA-pyrophosphorylase [Streptococcus sp. 2_1_36FAA]
Length = 399
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 101/400 (25%), Positives = 176/400 (44%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLKRPIHDVDIASSSYPEETKRIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLVEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GLNDL NR ++ +G A R ED LRI+R FRF A +++ D +A
Sbjct: 128 NGQVIDLFQGLNDLENRILRAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFLAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + FL + S L ++ E
Sbjct: 187 NCAPLLEKISVERIFIEFDKLLLAPYWRKGLESLLKSNA--IEFLPDLKGSRANLERLFE 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + + L+ D +++ K + RE + + +
Sbjct: 245 LASDFRFSASE-QAWAALLLALDVQNVKGFLKDWKTSREFAKRVADIVEIVTIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLLQAEELRQAQGLPVDFSAIQNLDASLTIHNKQEMVVNGGMLI 357
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ +G PG K+G IL + ++ E ++ +++
Sbjct: 358 QDFGFKPGPKLGQILKELEYAIVDGRLPNDLEAIYAYIKE 397
>gi|188580718|ref|YP_001924163.1| polynucleotide adenylyltransferase [Methylobacterium populi BJ001]
gi|179344216|gb|ACB79628.1| Polynucleotide adenylyltransferase region [Methylobacterium populi
BJ001]
Length = 421
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 124/407 (30%), Positives = 205/407 (50%), Gaps = 7/407 (1%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + L+ L+ + + +VGG VRD+L+ V DID+ATT+LP+ VM K
Sbjct: 19 LARAGVQACLAALDAPGEATRLVGGCVRDALLGSIVSDIDLATTLLPEAVMERAGAAGIK 78
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+PT I +GTI ++ R + ++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL
Sbjct: 79 AVPTGIEHGTITLVVRGEPHEVTTLREDVETDGRHAVVRFGRDFSRDAERRDFTINALSL 138
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D +G++ D GG+ DL ++FIGDA R+ ED LR+LRFFRF A YG D++GL A
Sbjct: 139 DARGRLHDTTGGVADLAAGRVRFIGDAATRLREDALRLLRFFRFHARYGRGAPDAEGLAA 198
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+I A+ L LS ER+ +E KLL A + A+ + G+ I E+ +L++
Sbjct: 199 AIAARGSLDRLSRERVRAEFLKLLLAPRAVAAVATLSETGLLLRILGGTGELG--RLARA 256
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
AE + + + + + +D + + + + ++ ++
Sbjct: 257 AGAEPALDAT--ARFAALAVRTSEDADRLQARLRLSRAEHARLTDYAAALAALHDRPDIA 314
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ L ++G + + L +AL + +P+FP+TG D
Sbjct: 315 AEAVPALVAIHGAEPLREAL---IALDGEPRPRVTAEARAALDRMARAGTRPVFPVTGAD 371
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+V G+PPG+ VG L ++ W+ E L+ + + +++
Sbjct: 372 LVARGLPPGRGVGLGLKAARELWLAEGCPDDAEARERLIARALEAAK 418
>gi|331003536|ref|ZP_08327033.1| hypothetical protein HMPREF0491_01895 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412377|gb|EGG91768.1| hypothetical protein HMPREF0491_01895 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 406
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 105/404 (25%), Positives = 175/404 (43%), Gaps = 16/404 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++ I+ +L + + VGG VRDSL+ + D DI T LP + +IF K
Sbjct: 7 KNVEKIIEMLEESGFEGFAVGGCVRDSLLQKTPTDWDITTNALPSEMKKIFK----KTFD 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYAD 130
T I++GTI ++ +++TT R D +DGR+ F+++ D RRDFTINA+
Sbjct: 63 TGIAHGTITVLMDSVGYELTTYRIDGNYSDGRHPDNVFFSKNLSEDLCRRDFTINAMAYS 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D G DL I+ +GDA R ED LR+LR RF A G I+ D VA
Sbjct: 123 HKRGIVDLYSGREDLEKGIIRAVGDAKKRFDEDALRMLRAVRFSAQLGF-EIEKDTFVAI 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L +S ERI+ E+NK L N I +Y+ G++K I + I + +
Sbjct: 182 TEKASLLSKVSKERIFVELNKTLSGDFAQN-IKFIYSSGLYKYIGKEFAGIKEEFYN--- 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + L + +D S+ + + + +
Sbjct: 238 -FYPRKLGNKKHMYWTVFLKNIEDINSVKKILSELKSDNATKINTDLLIKELRLPLPKND 296
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLT 366
+I+ + G ++ LKI N +D I I + +T
Sbjct: 297 EDIRWSLHRLGCELFEDYLKICKTDKDNENNLKDIYEIEDGYKKIREKNHAFEISMLDIT 356
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D++ GI G ++G IL + ++ I S ++ L L+++
Sbjct: 357 GRDLMDMGIQKGPEIGEILEYLLKKVIKSPELNNKNSLMALVKE 400
>gi|268554488|ref|XP_002635231.1| Hypothetical protein CBG11474 [Caenorhabditis briggsae]
Length = 462
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 120/418 (28%), Positives = 202/418 (48%), Gaps = 17/418 (4%)
Query: 1 MVSIVQHKW--FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58
++ I + L+ + L K + I GGAVRD LMN+ D+D A+T P +
Sbjct: 37 LMKIDNEDFRALFTPQLLKLRDLFAKRNYELRIAGGAVRDLLMNIRPADVDFASTATPTQ 96
Query: 59 VMRIFSKTRYKV-IPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKAD 116
+ +F + ++ +GTI K+ F+ITTLR D++ DGR AKV +T DW+ D
Sbjct: 97 MKEMFEQENIRMLHKRGEEHGTITCRIDEKENFEITTLRIDVVCDGRRAKVEYTTDWQLD 156
Query: 117 SLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
+ RRD TIN+L+ D G V+DY GG+ D+ R + F+GDA RI EDYLRILR+FRFF
Sbjct: 157 ANRRDLTINSLFLDLHGNVVDYFGGIGDIETRRVAFVGDARQRIQEDYLRILRYFRFFGR 216
Query: 177 YGE-KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ ++D + A I K G+ +S+ERIW+E+ K++ + + + M ++
Sbjct: 217 ISNSPDHEADTIQAIIDNKDGMSGISAERIWTELKKIVIGRMADDVVKAMIEQCELQKYL 276
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+E ++ + Q+ + F ++ + L + + K S
Sbjct: 277 GLPEECNITRFRQIF---KRFPKSVEPMTMVASLCEGVKQIAQFHKITKLSNDERFLGEF 333
Query: 296 ISFFN----CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
I N N I + L G + + +L++ L ++ D +
Sbjct: 334 ILREREAALENMNNDDWWIDRMVDLEVRPGHENLPDRLRLRLVQLARSVLADD-----ER 388
Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ + + P FP+TG D+++ G+ G V N+L++ + W S F ++E+L R
Sbjct: 389 IEMLQKFTPPQFPITGRDLMEAGVRKGPGVKNVLIYLYELWKTSRFTSTKEELLERAR 446
>gi|218132748|ref|ZP_03461552.1| hypothetical protein BACPEC_00609 [Bacteroides pectinophilus ATCC
43243]
gi|217992474|gb|EEC58477.1| hypothetical protein BACPEC_00609 [Bacteroides pectinophilus ATCC
43243]
Length = 424
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 96/413 (23%), Positives = 178/413 (43%), Gaps = 23/413 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
D ILS L ++ +VGG VRDSL+ + D DI T+ LP +V ++F + + T
Sbjct: 19 DAQEILSTLEADGRQAYVVGGCVRDSLIGRTPGDWDITTSALPMQVKQLFR----RTVDT 74
Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ +++TT R D DGR+ V F+ + + D RRDFTINA+ +
Sbjct: 75 GIKHGTVTVMMGDTGYEVTTYRIDGNYADGRHPDSVEFSANLRDDLKRRDFTINAMAYNN 134
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
++D G+ DL+ ++ +GDA R ED LR++R RF A G ID D A
Sbjct: 135 SDGLVDEFNGIGDLQAGIVRCVGDARERFTEDALRMMRAIRFSAQLGFI-IDEDTYSAIG 193
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ +S ERI E+ K+L + +P + + + + + + + + I D+
Sbjct: 194 AMADTISKVSMERIHDELGKILMSDHP-DYVKRLCDTRLTQYVLPVMDSILTDR-RCNST 251
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ LR+ L + D + + K L + + + P
Sbjct: 252 LTLLMHAGNSPYLRYAALYNAADADNANAELKALKLDNNTINTVTKIVRLSKTSIDETEP 311
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLT---------HQDTCFILQVLSDIIH----W 358
+++ ++YG + ++ ++ + I ++ +II
Sbjct: 312 AVREAIHMYGRDFLPLLMRHQTSVIAAKEETTGIMMTAARKHVEVINRLYEEIIKRGDCI 371
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
++G D+++ G+ G ++G L + + +E L +L L
Sbjct: 372 SIKDLDISGSDLMELGM-SGPRIGETLNSMLHIVMENPKLNDKETLIAMLGTL 423
>gi|21740087|emb|CAD39059.1| hypothetical protein [Homo sapiens]
gi|117646864|emb|CAL37547.1| hypothetical protein [synthetic construct]
gi|119584291|gb|EAW63887.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_c [Homo
sapiens]
Length = 414
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 106/402 (26%), Positives = 183/402 (45%), Gaps = 29/402 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QDID ATT P ++ +F +
Sbjct: 40 LFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D
Sbjct: 160 LGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRI--VDKPGDHDP 217
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+++A + I + K + SL++ +
Sbjct: 218 ETLEAIAENAKGLAGISGERIWV-----------------ELKKILVGLPANASLEEFDK 260
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
V + F K +LL + + + + + + +E + + + +
Sbjct: 261 VSKNVDGFSPKPVTLLASLFKVQDD----VTKLDLRLKIAKEEKNLGLFIVKN--RKDLI 314
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ Y D ++ ++ L +Q + L ++ W P FP++G
Sbjct: 315 KATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCL---LKEMQQWSIPPFPVSGH 371
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 372 DIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 413
>gi|315653514|ref|ZP_07906435.1| poly A polymerase [Lactobacillus iners ATCC 55195]
gi|315489205|gb|EFU78846.1| poly A polymerase [Lactobacillus iners ATCC 55195]
Length = 458
Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats.
Identities = 98/399 (24%), Positives = 173/399 (43%), Gaps = 18/399 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF K I
Sbjct: 72 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFE----KTID 127
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D
Sbjct: 128 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 187
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A
Sbjct: 188 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGF-ELDLDTKKAI 246
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQV 249
+ L +S ERI E K+ K+ A + + +L+ ++ L S++
Sbjct: 247 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 306
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
++ I+++ I + + + + +
Sbjct: 307 ----NFSPVTEETFWATIIILLKLPNNEIAKFMRAWKNSNAMEHCVYDIVTF------FD 356
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + + + L L ++ I+ + + + G+
Sbjct: 357 LLSYRIPSNYELFSTNLDTIMQTLDLSNILGQPVNSQAIIDRYESLPLKNESELVIDGNY 416
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++K GIP G ++G +L+ K+ + + + + L
Sbjct: 417 LLKKGIPAGPRIGELLIEIKKAILERKLENNISAIDVFL 455
>gi|117645344|emb|CAL38138.1| hypothetical protein [synthetic construct]
Length = 414
Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats.
Identities = 106/402 (26%), Positives = 183/402 (45%), Gaps = 29/402 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QDID ATT P ++ +F +
Sbjct: 40 LFAEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D
Sbjct: 160 LGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRI--VDKPGDHDP 217
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+++A + I + K + SL++ +
Sbjct: 218 ETLEAIAENAKGLAGISGERIWV-----------------ELKKILVGLPANASLEEFDK 260
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
V + F K +LL + + + + + + +E + + + +
Sbjct: 261 VSKNVDGFSPKPVTLLASLFKVQDD----VTKLDLRLKIAKEEKNLGLFIVKN--RKDLI 314
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ Y D ++ ++ L +Q + L ++ W P FP++G
Sbjct: 315 KATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCL---LKEMQQWSIPPFPVSGH 371
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 372 DIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 413
>gi|266620762|ref|ZP_06113697.1| poly A polymerase [Clostridium hathewayi DSM 13479]
gi|288867623|gb|EFC99921.1| poly A polymerase [Clostridium hathewayi DSM 13479]
Length = 410
Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats.
Identities = 98/403 (24%), Positives = 172/403 (42%), Gaps = 17/403 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
D I+ LN+ ++ +VGG VRDSL+ +D DI T+ P V IFS + I T
Sbjct: 10 DAEQIIEKLNEHGFEAYVVGGCVRDSLLGKEPEDWDITTSARPGEVKSIFS----RTIDT 65
Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ +++TT R D DGR+ K V FT D RRDFTINA+ +
Sbjct: 66 GIQHGTVTVMLNRQGYEVTTYRVDGEYEDGRHPKSVDFTTSLLEDLKRRDFTINAMAYNS 125
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ ++D GG+ DL NR I+ +G A +R ED LRILR RF A I+ + A
Sbjct: 126 REGLVDAFGGIEDLENRVIRCVGSAVNRFTEDALRILRAVRFSAQLDF-RIEDETYEAIS 184
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI +E+ KLL + +P G + +L++ E
Sbjct: 185 IIAPNLEKVSKERIATELTKLLLSSHPEKMKRVSDTGASRYVSEPFCRAAALNK----DE 240
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ +R+ L+ + ++ ++ + + + + + + P
Sbjct: 241 LRPLGLLPAVKYMRWAGLLRREQGETAAAILRDLKMDCDTMDKVKILVSRWRIPISAEKP 300
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALH------YNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
I+++ ++ + L Y ++ D +
Sbjct: 301 AIRRVMNQIPPDLLDSLLCFQEVFAAELGEGYRETLKAVKTLAEEIRRDGDPVNLKELAV 360
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G D++ G+ PG +G L ++ + ++E L +
Sbjct: 361 DGRDLMAAGMKPGPALGKTLNALMEQVLEQPECNTREYLLNAA 403
>gi|295102217|emb|CBK99762.1| tRNA nucleotidyltransferase/poly(A) polymerase [Faecalibacterium
prausnitzii L2-6]
Length = 403
Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats.
Identities = 97/408 (23%), Positives = 173/408 (42%), Gaps = 17/408 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L L++ + VGG VRDSL+ L+ D D+ T P++VM +F + + IP
Sbjct: 7 PGASALLDALHRAGFAAYAVGGCVRDSLLGLAPHDWDLCTAARPEQVMELFGEK--QCIP 64
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYAD 130
T + +GT+ + + ++ITT R++ +DGR+ V F D + D RRDFTINA+
Sbjct: 65 TGLQHGTVTVKRDGRLYEITTFRTEGSYSDGRHPDSVAFVPDVREDLARRDFTINAMAYS 124
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ + D GG DL ++ +G+ R ED LRILR +RF A +G ID A+
Sbjct: 125 AEEGLCDPFGGQEDLARGVVRAVGEPLRRFEEDALRILRLYRFAARFGFV-IDETTEAAA 183
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L +S ERI E+NKLL A P + + + ++ L + ++I
Sbjct: 184 KQLAAHLDCVSVERIEEELNKLLSAPKPGAYLE----PEVLAFVLPELPPDYLSEAREII 239
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+A ++ + R+ L+ + K+ + + + +
Sbjct: 240 DALPAGGEEVTT--RWAALLLPLGEDGTRKALKRLKCSNAVIDGVSTLVKEKAPRTPALS 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----IHWKKPLFPLT 366
+ K+L Y + ++ AL + + + + + +
Sbjct: 298 LQAKRLLGKYCLHTVRQLTALWSAL--RPERKDEFTALQKEAETLTAQSACCRVSQLAVN 355
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
G D++ G+ PG + L +E I + +L K A+
Sbjct: 356 GRDLMAAGVAPGPGLRRALEALLEEVITGRLPNKKAELLAFAAKFSAA 403
>gi|169335807|ref|ZP_02863000.1| hypothetical protein ANASTE_02233 [Anaerofustis stercorihominis DSM
17244]
gi|169258545|gb|EDS72511.1| hypothetical protein ANASTE_02233 [Anaerofustis stercorihominis DSM
17244]
Length = 439
Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats.
Identities = 92/438 (21%), Positives = 158/438 (36%), Gaps = 42/438 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL N ++ IVGG VRD L+ + +D DI T P M +F + YK IP
Sbjct: 7 KEAKIILDKFNNNGYEAYIVGGCVRDLLLGKTPKDYDITTNASPKETMELFKE--YKTIP 64
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYAD 130
T I YGT+ +I ++TT R + + D RRDFTINA+ +
Sbjct: 65 TGIKYGTVTVIINNTPIEVTTFRKEGKYIKNRKPESVEFLSSIEEDLSRRDFTINAMAYN 124
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++ +ID G DL I+ +GD R ED +RILR +RF Y + ++
Sbjct: 125 EKSGLIDLFEGRQDLEKGIIRVVGDGKERFKEDAIRILRAYRFMGRYDFEIENNTLNAIK 184
Query: 191 IKAK---------KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+I +INK+ I ++ + + Q +
Sbjct: 185 ENMHLLNNVAKERILPEIKEIFESDMDINKMDFITVLFPIIKECFHTYQNNKYHM--QNV 242
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLR----------------FIVLISWQDKKSILSMAKKF 285
E VF K+ LL S ++ ++ F
Sbjct: 243 GEHTYKTFNNIENVFHLKMTMLLHDIGKVKTKTTDAENTDHFYNHSDISREMAKNILDDF 302
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN------- 338
+ + ++ + +K+ +G+++ +K+ +A
Sbjct: 303 KFDNDTKEKILLLIKNHDKYMAPKNKYVKEKLNEFGEELFFDLIKVRIADDEAKNHELVK 362
Query: 339 ---NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
F +V+ + ++ + GD ++ G GK VG IL + E I
Sbjct: 363 DNLKRFRDTEEFAKRVIKNKEPYRISDLKINGDYIISLGFT-GKDVGEILKYLLSEVIED 421
Query: 396 SFQLSQEDLHHLLRKLIA 413
+ + L L+R+
Sbjct: 422 KDKNDKNKLIELVREYKK 439
>gi|291542754|emb|CBL15864.1| tRNA nucleotidyltransferase/poly(A) polymerase [Ruminococcus bromii
L2-63]
Length = 448
Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 103/443 (23%), Positives = 192/443 (43%), Gaps = 47/443 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LN ++ IVGG VRD L+ L+ D DI T LP++ + F Y+
Sbjct: 4 NKNAEKLIRQLNNQGYEAFIVGGCVRDYLLGLTPHDTDICTNALPEQTKKCFEA--YRTF 61
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAK-VVFTRDWKADSLRRDFTINALYA 129
T I +GTI ++C + ++ITT R D R+ V FTR+ D RRDFT+NA+
Sbjct: 62 DTGIKHGTISVVCGGEVYEITTYRIDGDYSDNRHPDSVSFTRNINEDLQRRDFTVNAMAY 121
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + ++D GG NDL+++ I+ +G+ R ED LRILR RF + YG +I+ + +
Sbjct: 122 NAEYGLVDPYGGKNDLKDKIIRCVGNPDTRFNEDALRILRALRFASVYGF-SIEENTSKS 180
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
K LK +++ER+ SE KL+ K+ + + I ++ + + +
Sbjct: 181 IFKNADLLKNIATERVISEFLKLICGKDAVKILDA--YRETIAVIIPEITVMFNFNQNNI 238
Query: 250 IEAEQVFEW--------KIDSLLRFIVLISWQDKKSIL---------------------- 279
+ +++ + + +LR +L+ K +
Sbjct: 239 HHSYDLWQHTLTALGTIEPNPILRMTMLLHDIGKPFVKTTDNSGQSHFQGHQLESKKIAD 298
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ + LP + + + + S +KK+ + G + L++ A
Sbjct: 299 RILHRLRLPSDFINKTLLLIEYHDVRFNGSKKLMKKVMNVLGTDLTKQLLEVEYADISAQ 358
Query: 340 LTHQDTCF----------ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
+Q + +++ D +K + G DV+ G+ G+ VGNIL +
Sbjct: 359 SEYQREEKLGYLETAKTHLNEIIKDNECFKLSQLDINGKDVLNLGVKEGRDVGNILDYLL 418
Query: 390 QEWINSSFQLSQEDLHHLLRKLI 412
+++S + L ++ I
Sbjct: 419 MLVVDASVPNKKSILISKAKEYI 441
>gi|168210477|ref|ZP_02636102.1| polyA polymerase family protein [Clostridium perfringens B str.
ATCC 3626]
gi|170711451|gb|EDT23633.1| polyA polymerase family protein [Clostridium perfringens B str.
ATCC 3626]
Length = 422
Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 100/417 (23%), Positives = 178/417 (42%), Gaps = 25/417 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ IL N ++ IVGG VRDSL+N QD DI T P+++ +F K IPT
Sbjct: 6 NVQYILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFD----KTIPT 61
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ K +++TT R + + + + V F + + D RRDFTINA+
Sbjct: 62 GIKHGTVTVLIDKTPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 121
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
D G DL+N+ I+ +GD R ED LR+LR RF I+ +
Sbjct: 122 YLGFKDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQLNF-KIEKLTAESIR 180
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-------D 244
K K +K +S ERI SE K++ + +P ++ + N G + + + + + D
Sbjct: 181 KNFKLVKNISMERIQSEFTKIILSNDPDRGLMLLRNLGFSDFLVKEFKNLKIINCYDLYD 240
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ K+ L + + + ++ + + N N
Sbjct: 241 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVEN 300
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT----------CFILQVLSD 354
++S +K L + V + L L + L++ D + +L+
Sbjct: 301 INSISCNMTRKKLKLLINSVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILAS 360
Query: 355 IIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+TG+D++ + PGK +G IL + + + ++EDL +L ++
Sbjct: 361 KEPIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 417
>gi|331701410|ref|YP_004398369.1| CCA-adding enzyme [Lactobacillus buchneri NRRL B-30929]
gi|329128753|gb|AEB73306.1| CCA-adding enzyme [Lactobacillus buchneri NRRL B-30929]
Length = 403
Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 90/394 (22%), Positives = 174/394 (44%), Gaps = 20/394 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + IL + ++ VGG+VRD+++ + D+DIAT+ P V +F + + T
Sbjct: 16 EALPILQKIESAGYEAYFVGGSVRDTILKRPIHDVDIATSAYPSEVKALFK----RTVDT 71
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ I+ +++TT R++ R V F R K D RRDFTINAL +
Sbjct: 72 GIEHGTVMILDHGTGYEVTTFRTESGYQDYRRPDHVTFVRSLKEDLKRRDFTINALALAE 131
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+V D GGL+D+R I+ +GD + R ED LR++R RF + I+ L
Sbjct: 132 NGQVTDLFGGLSDMRKHIIRAVGDPNERFNEDALRMMRAVRFASQLDF-KIEDATLAGIA 190
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + L ++ ER +E K++ + + + M +++ + + + + + +
Sbjct: 191 RHSQLLAKIAVERSHTEFVKMMLGSDANHGLKIMIQTNLYQHVPILGEHLVQLRQIADTD 250
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E ++ +LL F + + I K++ +I +I F + +
Sbjct: 251 FTLTNEVQVWALLAFKFGF---NSQQITRFLKRWKTANKIINDVILTVELLFAIQRGQVT 307
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y G + + + +F + + + + K +TG +++
Sbjct: 308 NL--TLYHAGSENVDNAIAVFADQSKTTG-------LSERYNRLAIKNKHQLKITGGELI 358
Query: 372 KYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
K G + P ++G +L + +Q + EDL
Sbjct: 359 KRGVLKPSPQLGQVLNYLEQNVVADKINNEPEDL 392
>gi|257896203|ref|ZP_05675856.1| poly A polymerase [Enterococcus faecium Com12]
gi|293379555|ref|ZP_06625697.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecium PC4.1]
gi|257832768|gb|EEV59189.1| poly A polymerase [Enterococcus faecium Com12]
gi|292641864|gb|EFF60032.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecium PC4.1]
Length = 402
Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 86/399 (21%), Positives = 157/399 (39%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F K I
Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFP----KTIDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F R + D RRDFTINA +
Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLEEDLKRRDFTINAFALKED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G+ H R ED LR++R RF + G K +
Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFKLEEETFYAIKEN 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ KI I LL + + L + +L + +++
Sbjct: 189 HELLGKISVERINLEFIKMLLGNERSAGIHAFIKTECYICCPGLREEGEALLRFAELPSV 248
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E + +LL + + I S K + ++ + + +KT +
Sbjct: 249 PLKEESQAWTLLISQL---DLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRKTGVLEP 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G K + ++ + + + + G +++
Sbjct: 306 F--ELYFLGKKHALQVEELMTYFDETP----QMDVVEESYDRLPIKSLSELAVDGKILLE 359
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G PGK V L ++ + + ++ + L K
Sbjct: 360 ESGKKPGKWVSEALQSAEKAVVEQRIENDKKQVLDFLSK 398
>gi|168214036|ref|ZP_02639661.1| polyA polymerase family protein [Clostridium perfringens CPE str.
F4969]
gi|170714488|gb|EDT26670.1| polyA polymerase family protein [Clostridium perfringens CPE str.
F4969]
Length = 422
Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 100/417 (23%), Positives = 177/417 (42%), Gaps = 25/417 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ IL + ++ IVGG VRDSL+N QD DI T P+++ +F K IPT
Sbjct: 6 NVQYILDKFDSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFD----KTIPT 61
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ K +++TT R + + + + V F + + D RRDFTINA+
Sbjct: 62 GIKHGTVTVLIDKTPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 121
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
D G DL+N+ I+ +GD R ED LR+LR RF I+ +
Sbjct: 122 YLGFKDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQLNF-KIEKLTAESIR 180
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-------D 244
K K +K +S ERI SE K++ + P ++ + N G + + + + L D
Sbjct: 181 KNFKLVKNISMERIQSEFTKIILSNEPDRGLMLLRNLGFSDFLVKEFKNLKLINCYDLYD 240
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ K+ L + + + ++ + + N N
Sbjct: 241 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVEN 300
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT----------CFILQVLSD 354
++S +K L + V + L L + L++ D + +L+
Sbjct: 301 INSISCNMTRKKLKLLINSVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILAS 360
Query: 355 IIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+TG+D++ + PGK +G IL + + + ++EDL +L ++
Sbjct: 361 KEPIFIKDLAITGNDLITELNYKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 417
>gi|227543425|ref|ZP_03973474.1| tRNA adenylyltransferase [Lactobacillus reuteri CF48-3A]
gi|300910092|ref|ZP_07127552.1| tRNA adenylyltransferase [Lactobacillus reuteri SD2112]
gi|227186577|gb|EEI66648.1| tRNA adenylyltransferase [Lactobacillus reuteri CF48-3A]
gi|300892740|gb|EFK86100.1| tRNA adenylyltransferase [Lactobacillus reuteri SD2112]
Length = 403
Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 95/406 (23%), Positives = 174/406 (42%), Gaps = 18/406 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L + + ++ VGG VRD++++ + DIDIAT+ P + IF+ +
Sbjct: 11 EPARPVLQKIEEAGYEAYFVGGCVRDTILHDEIHDIDIATSAYPSEIKAIFNH----TVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ I+ ++ TT R++ R KV F R D RRDFTINAL
Sbjct: 67 TGIEHGTVMILDHGTGYETTTFRTESGYQDYRRPDKVTFVRSLSEDLQRRDFTINALALR 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G+VID GL DL+ IK +G+ + R ED LR++R RF + ID+ L
Sbjct: 127 EDGEVIDLFDGLEDLQKHLIKAVGNPNERFHEDALRMMRAVRFASKLDFV-IDTATLKGI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQLSQV 249
+ L+ ++ ERI E+ KLL +NP+ + G+++ L+ + +L L +
Sbjct: 186 KENAPLLEKIAVERIRVELEKLLLGQNPVAGLKDFIATGLYQYCPGLENAQAALSALLIL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ E ++ S+L + + D+K I KK+ ++ + + +
Sbjct: 246 NQWHLENEAQLWSVLSLQLQL---DQKEIGKFLKKWKTANDLIAQVKKVVPAVQAIRQRT 302
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ L + G+ + ++ + + + + + + G
Sbjct: 303 LTPT--LMFNTGETALHDANQVAKLYGWA----INDEELQKAYQKLPIKNAKELAIDGRI 356
Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++ K G+ PG +G IL +N L + ++
Sbjct: 357 LITKAGVKPGPLMGKILQQLTLAVVNGEIANDATTLLEKVEEITKE 402
>gi|332360707|gb|EGJ38516.1| polyA polymerase family protein [Streptococcus sanguinis SK49]
Length = 399
Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 102/400 (25%), Positives = 181/400 (45%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GLNDL NR ++ +G A R ED LRI+R FRF A +++ D A
Sbjct: 128 NGQVIDLFHGLNDLENRILRAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFAAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + G FL + S +L ++ E
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGA--IEFLPDLKGSRAKLERLFE 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + + L+ D +++ K + RE + + ++
Sbjct: 245 LASDFRFSASE-QAWAALLLALDVQNVKGFLKDWKTSREFAKKVEDLVEIAAIRSERNLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L+ L + D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLQQAEELRHAQGLAVDFSAIQNLDASLTIHNKQEMAVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++G PG K+G IL + ++ + E ++ + +
Sbjct: 358 REFGFEPGPKLGQILKELEYAIVDGHLPNNLEAIYAYIEE 397
>gi|295398917|ref|ZP_06808899.1| Polynucleotide adenylyltransferase region [Geobacillus
thermoglucosidasius C56-YS93]
gi|294978383|gb|EFG53979.1| Polynucleotide adenylyltransferase region [Geobacillus
thermoglucosidasius C56-YS93]
Length = 404
Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 101/407 (24%), Positives = 180/407 (44%), Gaps = 17/407 (4%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
++ + + I+ L K ++ VGGAVRD L+ ++ D+DIAT+ LP VM++F
Sbjct: 1 MKEPFQK---ALGIIRQLKKHGYEAYFVGGAVRDLLLKRNIGDVDIATSALPHEVMQLFP 57
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDF 122
K I +GT+ +I +++TT R + R V F R D RRDF
Sbjct: 58 ----KTIDIGSQHGTVVVIHDGIPYEVTTFRADGNYEDHRRPESVTFVRSLYEDLKRRDF 113
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
T+NA+ D+ GK+ID GG + + NR I +GD R ED LR++R RF + G ++
Sbjct: 114 TMNAIAMDEAGKLIDPFGGQDAITNRMICTVGDPKERFSEDALRMMRAIRFVSQLGF-SL 172
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D + A I+ L +S ER+ E KLLE A+ + +F + + ++ +
Sbjct: 173 DEETKQAIIENAPLLAHISVERMTMEFEKLLEGPFASRALSLLVETRLFFYLPMLCEKEN 232
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
Q + + ++ R+ L S + + + LP I + +
Sbjct: 233 ELQTAARYDWRKL----DSRGQRWGFLCHILRVDSPVRFLRAWKLPNRIIKEVETVLRIV 288
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ S ++ + +G + IA + + N+ + + ++ + K
Sbjct: 289 QTTHSDSDWTKER-LFAFGLEHAIAAETVRSVANGENVDERR-KKLRELFMSLPIKTKSE 346
Query: 363 FPLTGDDVVKYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G D++K+ P G V IL ++ I+ + +E +H L
Sbjct: 347 LAVRGHDIMKWFGKPGGPWVKEILELIERAVIHGEVENHKERIHEWL 393
>gi|301300784|ref|ZP_07206968.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851634|gb|EFK79334.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Lactobacillus salivarius ACS-116-V-Col5a]
Length = 404
Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 100/407 (24%), Positives = 181/407 (44%), Gaps = 18/407 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL + + ++ VGG+VRD+L+ L + D+DIA++ P+ + +IFS K +
Sbjct: 11 KKALPILEKIREAGFEAYFVGGSVRDTLLGLPIHDVDIASSAYPEEIKQIFS----KTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++ ++ITT R++ R KV F R + D RRD TINAL D
Sbjct: 67 TGVEHGTVMVLDHGTGYEITTFRTESTYQDYRRPDKVEFVRSLEEDLKRRDLTINALAMD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+GK+ID GL DL+N I+ +G+ R ED LR++R RF + ++ D A
Sbjct: 127 DKGKIIDLFDGLKDLKNGIIRAVGNPEERFHEDALRMMRAVRFGSQLDF-KVELDTFNAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAI-VHMYNGGIFKEIFLDVQEISLDQLSQV 249
K L+ ++ ERI E KLL K P + + + L + +
Sbjct: 186 KKNSHLLEKIAIERIHVEWVKLLLGKKPKQGLQEFLDTELYKYCPLFTDKYAELKSILEF 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ + E + +LL + + D ++L + I ++I+ C K
Sbjct: 246 PDFKLNTEEECWTLLSDVFKLKDTDISNLLR---SWKSSNNIIKYVIAASLCVQKIKDSK 302
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + +Y G ++++ +I + D + + + + G D
Sbjct: 303 L--DIETYYQNGIEIILTANQIAKIRGFGM----DDNELKINYDKLPIKSRKEMKINGKD 356
Query: 370 V-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ + G PGK +G IL ++E + + +E L ++L+
Sbjct: 357 LVQEAGAKPGKIMGEILNKLEKEIVFGNIINDKEILIENAKELLEEK 403
>gi|170764104|ref|ZP_02632218.2| polyA polymerase family protein [Clostridium perfringens E str.
JGS1987]
gi|170662329|gb|EDT15012.1| polyA polymerase family protein [Clostridium perfringens E str.
JGS1987]
Length = 424
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 100/417 (23%), Positives = 176/417 (42%), Gaps = 25/417 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ IL N ++ IVGG VRDSL+N QD DI T P+++ +F K IPT
Sbjct: 8 NVQYILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFD----KTIPT 63
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ K +++TT R + + + + V F + + D RRDFTINA+
Sbjct: 64 GIKHGTVTVLIDKNPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
D G DL+N+ I+ +GD R ED LR+LR RF I+ +
Sbjct: 124 YLGFKDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQLNF-KIEKLTAESIR 182
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-------D 244
K K +K +S ERI SE K++ + +P ++ + G + + + + L D
Sbjct: 183 KNFKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYD 242
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ K+ L + + + ++ + + N N
Sbjct: 243 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVEN 302
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT----------CFILQVLSD 354
+S +K L + V + L L + L++ D + +L+
Sbjct: 303 INNISCNMTRKKLKLLINSVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILAS 362
Query: 355 IIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+TG+D++ + PGK +G IL + + + ++EDL +L ++
Sbjct: 363 KEPIFIKDLAITGNDLITELNYKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 419
>gi|332637876|ref|ZP_08416739.1| CCA-adding enzyme [Weissella cibaria KACC 11862]
Length = 405
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 89/406 (21%), Positives = 164/406 (40%), Gaps = 16/406 (3%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ IL + ++ VGG+VRD+L+ + D+DIAT+ P+ V +F + + T
Sbjct: 12 AALPILETIEAAGFEAYFVGGSVRDTLLGKPIHDVDIATSAYPEEVKALFE----RTVDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ I+ + ++ TT R++ R +V F R D RRDFT+NA +
Sbjct: 68 GIEHGTVMILDHGQGYETTTFRTESTYTDFRRPDEVTFVRSLAEDLKRRDFTVNAFALTK 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G++ID GL+D+ N ++ +G+A R ED LR++R RF A I++ L A
Sbjct: 128 DGEIIDMFDGLSDMDNHILRAVGEAEERFHEDALRMMRAVRFAAQLDF-KIEAATLQAIK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L ++ ER E KLL+ K ++ M + + ++ + +D +
Sbjct: 187 DNAPLLANIAIERTNVEFTKLLQGKAARYGLLEMIATNLNQY-MPGLEVVDIDLIGYAEL 245
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ +V + + KK+ ++ + + K
Sbjct: 246 LADAQPQNDVAAWTLLVFELGLTPEDAVVFLKKWKQSNDMVKTIK--ASIKLLNKLRLGD 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV- 370
Y G + LA+ + D + D+ K G ++
Sbjct: 304 VAAWDLYEAG-----NAIDNVLAVAKLSELVVDVAGLKSRYEDLKIKNKGELAFNGGNLT 358
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ G+ PG G IL +Q+ + S + L + + ++
Sbjct: 359 KELGMQPGPLFGKILATLEQKVVAGDLNNSHDVLLAEAQTMAEKAK 404
>gi|227551173|ref|ZP_03981222.1| tRNA CCA-pyrophosphorylase [Enterococcus faecium TX1330]
gi|227179735|gb|EEI60707.1| tRNA CCA-pyrophosphorylase [Enterococcus faecium TX1330]
Length = 434
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 86/399 (21%), Positives = 157/399 (39%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F K I
Sbjct: 45 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFP----KTIDIG 100
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F R + D RRDFTINA +
Sbjct: 101 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLEEDLKRRDFTINAFALKED 160
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G+ H R ED LR++R RF + G K +
Sbjct: 161 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFKLEEETFYAIKEN 220
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ KI I LL + + L + +L + +++
Sbjct: 221 HELLGKISVERINLEFIKMLLGNERSAGIHAFIKTECYICCPGLREEGEALLRFAELPSV 280
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E + +LL + + I S K + ++ + + +KT +
Sbjct: 281 PLKEESQAWTLLISQL---DLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRKTGVLEP 337
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G K + ++ + + + + G +++
Sbjct: 338 F--ELYFLGKKHALQVEELMTYFDETP----QMDVVEESYDRLPIKSLSELAVDGKILLE 391
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G PGK V L ++ + + ++ + L K
Sbjct: 392 ESGKKPGKWVSEALQSAEKAVVEQRIENDKKQVLDFLSK 430
>gi|312110476|ref|YP_003988792.1| polynucleotide adenylyltransferase region [Geobacillus sp. Y4.1MC1]
gi|311215577|gb|ADP74181.1| Polynucleotide adenylyltransferase region [Geobacillus sp. Y4.1MC1]
Length = 404
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 101/407 (24%), Positives = 180/407 (44%), Gaps = 17/407 (4%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
++ + + I+ L K ++ VGGAVRD L+ ++ D+DIAT+ LP VM++F
Sbjct: 1 MKEPFQK---ALGIIRQLKKHGYEAYFVGGAVRDLLLKRNIGDVDIATSALPHEVMQLFP 57
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDF 122
K I +GT+ +I +++TT R + R V F R D RRDF
Sbjct: 58 ----KTIDIGSQHGTVVVIHDGIPYEVTTFRADGNYEDHRRPESVTFVRSLYEDLKRRDF 113
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
T+NA+ D+ GK+ID GG + + NR I +GD R ED LR++R RF + G ++
Sbjct: 114 TMNAIAMDEAGKLIDPFGGQDAITNRMICTVGDPKERFSEDALRMMRAIRFVSQLGF-SL 172
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D + A I+ L +S ER+ E KLLE A+ + +F + + ++ +
Sbjct: 173 DEETKQAIIENAPLLAHISVERMTMEFEKLLEGPFASRALSLLVETRLFFYLPMLCEKEN 232
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
Q + + ++ R+ L S + + + LP I + +
Sbjct: 233 ELQTAACYDWRKL----DSRGQRWGFLCHILRVDSPVRFLRAWKLPNRIIKEVETVLRIV 288
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ S ++ + +G + IA + + N+ + + ++ + K
Sbjct: 289 QTTHSDSDWTKER-LFAFGLEHAIAAETVRSVANGENVDERR-KKLRELFMSLPIKTKSE 346
Query: 363 FPLTGDDVVKYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G D++K+ P G V IL ++ I+ + +E +H L
Sbjct: 347 LAVRGHDIMKWFGKPGGPWVKEILELIERAVIHGEVENHKERIHEWL 393
>gi|302871533|ref|YP_003840169.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor
obsidiansis OB47]
gi|302574392|gb|ADL42183.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor
obsidiansis OB47]
Length = 394
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 103/408 (25%), Positives = 182/408 (44%), Gaps = 19/408 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + ++ +LN+ K+ +VGG +RD L++ QD DIAT P+ V+ +F K
Sbjct: 4 LKNEP-MKVIRILNQHGFKAYLVGGCLRDYLLSKEPQDFDIATDAKPEDVIHLFE----K 58
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
IPT I +GT+ +I ++TT R + R+ KV FT D RRDFTINA+
Sbjct: 59 TIPTGIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMA 118
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+IDY GG+ DL+N+ ++ +G+ H R ED LRILR RF ID++
Sbjct: 119 YHPDEGLIDYFGGIEDLKNKIVRCVGNPHERFFEDALRILRCIRFATQLSFV-IDNETFE 177
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K LK +S ERI E++K LE+KN + +Y + I + +I L
Sbjct: 178 ALKSLKDLLKKISKERINIELSKTLESKNSSYGLELLYESSVGSVIIPEFLQIYLY---- 233
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ + E F + F + +D I + + R I N
Sbjct: 234 LSQVEFDFIPTKFKVPAFFACL--KDNTLIEKLMRDLKFDRRNISLAIKLCNYLKR--HY 289
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ E+ K + ++ + + L + + + + I + G+
Sbjct: 290 NTEELIKRIFFEEEENVEDIIFTMSILKNDTKITETFDILKKQNRLIRKKDVK---INGN 346
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
D++K G+ GK++G L + + + + +++++ + + + +
Sbjct: 347 DLLKLGLK-GKEIGKTLNLIYEYILKNPEKNNKDEILNYVNFYLQEGK 393
>gi|182625370|ref|ZP_02953143.1| polyA polymerase family protein [Clostridium perfringens D str.
JGS1721]
gi|177909367|gb|EDT71819.1| polyA polymerase family protein [Clostridium perfringens D str.
JGS1721]
Length = 424
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 99/417 (23%), Positives = 176/417 (42%), Gaps = 25/417 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ IL N ++ IVGG VRDSL+N QD DI T P+++ +F K IPT
Sbjct: 8 NVQYILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFD----KTIPT 63
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ K +++TT R + + + + V F + + D RRDFTINA+
Sbjct: 64 GIKHGTVTVLIDKNPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
D G DL+N+ I+ +G+ R ED LR+LR RF I+ +
Sbjct: 124 YLGFKDCFNGKEDLKNKLIRCVGNPDKRFSEDALRMLRAIRFSCQLNF-KIEKLTAESIR 182
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-------D 244
K K +K +S ERI SE K++ + +P ++ + G + + + + L D
Sbjct: 183 KNFKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYD 242
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ K+ L + + + ++ + + N N
Sbjct: 243 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVEN 302
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT----------CFILQVLSD 354
+S +K L + V + L L + L++ D + +L+
Sbjct: 303 INNISCNMTRKKLKLLINAVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILAS 362
Query: 355 IIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+TG+D++ + PGK +G IL + + + ++EDL +L ++
Sbjct: 363 KEPIFIKDLAITGNDLITELNYKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 419
>gi|257887709|ref|ZP_05667362.1| poly A polymerase [Enterococcus faecium 1,141,733]
gi|257823763|gb|EEV50695.1| poly A polymerase [Enterococcus faecium 1,141,733]
Length = 402
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 86/399 (21%), Positives = 157/399 (39%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F K I
Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFP----KTIDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F R + D RRDFTINA +
Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLEEDLKRRDFTINAFALKED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G+ H R ED LR++R RF + G K +
Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFKLEEETFYAIKEN 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ KI I LL + + L + +L + +++
Sbjct: 189 HELLGKISVERINVEFIKMLLGNERSAGIHAFIETECYICCPGLREEGEALLRFAELPSV 248
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E + +LL + + I S K + ++ + + +KT +
Sbjct: 249 PLKEESQAWTLLISQL---DLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRKTGVLEP 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G K + ++ + + + + G +++
Sbjct: 306 F--ELYFLGKKHALQVEELMTYFDETP----QMDVVEESYDRLPIKSLSELAVDGKILLE 359
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G PGK V L ++ + + ++ + L K
Sbjct: 360 ESGKKPGKWVSEALQSAEKAVVEQRIENDKKQVLDFLSK 398
>gi|257867673|ref|ZP_05647326.1| poly A polymerase [Enterococcus casseliflavus EC30]
gi|257874001|ref|ZP_05653654.1| poly A polymerase [Enterococcus casseliflavus EC10]
gi|257876580|ref|ZP_05656233.1| poly A polymerase [Enterococcus casseliflavus EC20]
gi|257801756|gb|EEV30659.1| poly A polymerase [Enterococcus casseliflavus EC30]
gi|257808165|gb|EEV36987.1| poly A polymerase [Enterococcus casseliflavus EC10]
gi|257810746|gb|EEV39566.1| poly A polymerase [Enterococcus casseliflavus EC20]
Length = 404
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 85/403 (21%), Positives = 166/403 (41%), Gaps = 16/403 (3%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L + ++ VGG+VRD+++ + D+DIAT+ P + +F + I
Sbjct: 12 EAAPLLKKIEAAGYEAYFVGGSVRDTILGQPIHDVDIATSAFPAEIKALFP----RTIDI 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++ITT R++ R KV F R K D RRDFTINAL +
Sbjct: 68 GIEHGTVLVLWEQAQYEITTFRTEAAYQDYRRPDKVDFVRSLKEDLKRRDFTINALALQE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID GL D+ N+ ++ +G R ED LR++R RF + G ++++ L A
Sbjct: 128 DGVIIDLFDGLADIDNQILRAVGHPQERFHEDALRMMRGLRFVSQLGFV-LETETLAAIH 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L +S ERI E KLL + A+ + ++E + L ++ +
Sbjct: 187 ANHALLGKISVERIMIEFVKLLLGNHRNQALRALVE-TECYIYCPGLREYG-EALLRMAD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ + ++ +++ S K + + + + + ++
Sbjct: 245 LPAIPLENETAAWVLLIDQMGLAPEAVRSFLKAWKCSNDCIRQVHTAYQALLARRNGEWN 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
++ + Y +G + + L + D I Q + + G D++
Sbjct: 305 DL--VLYQFGLEATC----LAEGLLRYDNQPNDPAKISQRYQQLPIHSLKELAINGRDLL 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G + +L + I +E L ++ +A
Sbjct: 359 QTIDRSSGPWLKEVLTAAEAAVITRKIPNEKEALLAFVQAYLA 401
>gi|227529198|ref|ZP_03959247.1| tRNA adenylyltransferase [Lactobacillus vaginalis ATCC 49540]
gi|227350873|gb|EEJ41164.1| tRNA adenylyltransferase [Lactobacillus vaginalis ATCC 49540]
Length = 403
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 95/405 (23%), Positives = 167/405 (41%), Gaps = 16/405 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L + ++ VGG VRD+++ S+ DIDIAT+ P + IF+ + +
Sbjct: 11 EPARPVLQKIEDAGFEAYFVGGCVRDTILGDSIHDIDIATSAYPSEIKAIFN----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ I+ ++ TT R++ R KV F R D RRDFTINAL
Sbjct: 67 TGIEHGTVMILDHGTGYETTTFRTESGYQDFRRPDKVTFVRSLSEDLKRRDFTINALALK 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G+VID GL+DL++ IK +GD + R ED LR++R RF + I ++ L
Sbjct: 127 ENGEVIDLFNGLDDLKHHLIKAVGDPNERFHEDALRMMRAVRFASKLDFV-IAAETLAGI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L+ ++ ERI E KLL +NP+ + G+++ V + +LS ++
Sbjct: 186 KQNAALLEKIAVERIRVEFEKLLMGQNPVAGLNEFLQTGLYQYCPGLVGKQ--TELSGLL 243
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ IV D + + + E+ + Q S
Sbjct: 244 LLNNWQLRNAEQAWAVIVTQLGLDSRDASKFLRSWKTSNELITNVKKMIP--VIQGLRSK 301
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
F+ G + ++ + Q +++ + + G +
Sbjct: 302 KLSPLTFFTAGRNAVQDANQVAKLYGWAIPDEQ----LMKQYDSLPIKSGKELAVNGGVL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ G+ PG +G I+ + +N +E L + K+
Sbjct: 358 INDAGVKPGPLLGKIIKKLTVQVVNGELPNDRETLINEAEKIKKE 402
>gi|332360748|gb|EGJ38556.1| polyA polymerase family protein [Streptococcus sanguinis SK355]
Length = 399
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 101/400 (25%), Positives = 181/400 (45%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL+DL+NR ++ +G A R ED LRI+R FRF A +++ D A
Sbjct: 128 NGQVIDLFQGLDDLKNRILQAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFAAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + G FL + S +L ++ E
Sbjct: 187 DCASLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGA--IEFLPDLKGSRAKLERLFE 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ F + + L+ D +++ KK+ RE + + +
Sbjct: 245 LDSDFRFSASE-QAWAALLLALDVQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLLQAEELREAQGLSVDFSAIQNLDASLTIHSKQEMVVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++G PG K+G +L + ++ E ++ +++
Sbjct: 358 REFGFEPGPKLGQMLKELEYAIVDGHLPNELEAIYAYIKE 397
>gi|314938015|ref|ZP_07845325.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecium TX0133a04]
gi|314941999|ref|ZP_07848860.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecium TX0133C]
gi|314948748|ref|ZP_07852120.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecium TX0082]
gi|314951766|ref|ZP_07854805.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecium TX0133A]
gi|314991827|ref|ZP_07857285.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecium TX0133B]
gi|314995868|ref|ZP_07860955.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecium TX0133a01]
gi|313589972|gb|EFR68817.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecium TX0133a01]
gi|313593638|gb|EFR72483.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecium TX0133B]
gi|313596045|gb|EFR74890.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecium TX0133A]
gi|313599251|gb|EFR78096.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecium TX0133C]
gi|313642590|gb|EFS07170.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecium TX0133a04]
gi|313644814|gb|EFS09394.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecium TX0082]
Length = 425
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 85/399 (21%), Positives = 158/399 (39%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F K I
Sbjct: 36 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFP----KTIDIG 91
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F R D RRDFTINA +
Sbjct: 92 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLAEDLKRRDFTINAFALKED 151
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G+ H R ED LR++R RF + G K +
Sbjct: 152 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFKLEEETFYAIKEN 211
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ KI I LL + + L + +L + +++
Sbjct: 212 HELLGKISVERINVEFIKMLLGNERAAGIHAFIETECYICCPGLKEEGEALLRFAELPSV 271
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E + +LL + + I S K + ++ + + ++T ++
Sbjct: 272 PLKEESQAWALLISQL---DLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRETGALEP 328
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G K + ++ + + + + + G +++
Sbjct: 329 F--ELYFLGKKHALQVEELMIYFDETP----QMDAVGESYDRLPIKSLSELAVDGKILLE 382
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G PGK V L ++ + + ++ + L K
Sbjct: 383 ETGKKPGKWVSEALQLAEKAVVEQRIKNDKKQVLDFLSK 421
>gi|325978493|ref|YP_004288209.1| tRNA CCA-pyrophosphorylase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|325178421|emb|CBZ48465.1| tRNA CCA-pyrophosphorylase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 401
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 96/401 (23%), Positives = 174/401 (43%), Gaps = 18/401 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF + +
Sbjct: 12 EALPILKKIREAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKGIFH----RTVDI 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ITT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 68 GIEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID GL DL + ++ +G+ R ED LRI+R FRF A +I+ D A
Sbjct: 128 TGLIIDKFNGLADLEAKLLRAVGNPAERFNEDALRIMRGFRFAASLDF-DIEPDTFAAMA 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN-GGIFKEIFLDVQEISLDQLSQVI 250
L+ +S ER + E +KLL A I M +L+ +L QL +
Sbjct: 187 AHAPLLEKISVERSFIEFDKLLMAPFWRKGIKAMITSQAQKYLPYLENAHDNLQQLLDDL 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ F+ + ++ + +D + L K S ++ +++ + +
Sbjct: 247 ACDYHFKTSEQAWAALLLALDVKDVRVFLKAWKTSSQFQKDVEKIVAIYRFRLENELDK- 305
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
Y YG ++ L D I ++ ++ K + G +
Sbjct: 306 ----MEMYRYGSC----LIEQAEDLRAGFGLPVDFERIERLDKELTIHDKHEIVVNGGVL 357
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+K PG ++G +L +++ + +E + +RK
Sbjct: 358 IKELQYKPGPELGQVLKEIEEKIVLGELANDKEAIFDFIRK 398
>gi|327470124|gb|EGF15588.1| polyA polymerase family protein [Streptococcus sanguinis SK330]
Length = 399
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 102/400 (25%), Positives = 182/400 (45%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ S+ D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKTAGFEAYFVGGSVRDALLQRSIHDVDIASSSYPEETKRIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL+DL NR ++ +G A R ED LRI+R FRF A +++ D VA
Sbjct: 128 NGQVIDLFQGLDDLENRILRAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFVAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + E D++E S +L ++ +
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWHKGLEAL-LTSGAIEFLPDLKE-SRAKLERLFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + + ++ D +++ KK+ RE + + +
Sbjct: 245 LASDFRFSASE-QAWSAILLALDVQNVKGFLKKWKTSREFAKKVEDLIEIAVIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLLQAEELREAQGLSVDFSAIQNLDASLTIHSKQEMVVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++G PG K+G IL + ++ E ++ +++
Sbjct: 358 REFGFEPGPKLGQILKELEYAIVDGYLPNDLEAIYAYIKE 397
>gi|258513929|ref|YP_003190151.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfotomaculum acetoxidans DSM 771]
gi|257777634|gb|ACV61528.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfotomaculum acetoxidans DSM 771]
Length = 584
Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats.
Identities = 82/441 (18%), Positives = 165/441 (37%), Gaps = 51/441 (11%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ +++ L + ++ +VGG VRD LM D DIAT+ ++ +F K +P
Sbjct: 7 VLKVINKLKENGKQAFLVGGCVRDLLMGSEPADYDIATSAAAQEILSLF----GKTVPIG 62
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+GTI ++ +++T + + +G + D RDFTINA+ D +G
Sbjct: 63 ERHGTISVLLDGFTVEVSTFKGYVREEG-------PGGLEKDLSLRDFTINAMAIDGEGG 115
Query: 135 VIDYVGGLNDLRNRTIKFIGD-AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
D GG DL + I+ G+ R +ED LR++R RF +G + K
Sbjct: 116 FYDPFGGQKDLEQKIIRSPGNEPEQRFIEDPLRMMRAIRFCCSFGFSLHPDTNKAIA-KN 174
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
++ + ER+ E+N++L + P I + G+ + + + + ++
Sbjct: 175 HALIQRSAPERVREELNRILISDLPSLGIRLLAETGLLRHVMPEAISLVNFDQRDKPHSK 234
Query: 254 QVFEWKIDSL------------------------------LRFIVLISWQDKKSILSMAK 283
VFE + L S + + I S+ K
Sbjct: 235 DVFEHTMAVLEATPPRLNVRLAALLHDIGKTLTFSADERVTGHFYGYSLKGCRVIESILK 294
Query: 284 KFSLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
+ + + + L +K+L G+ + + A + T
Sbjct: 295 RLRYDNKTIENVSVLVGEHMSCFPKLRDVSLKRLVKRVGEHNLDDLFDLQRANILVSATP 354
Query: 343 QDTCF-------ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
D I ++L++ + + G D++ G G ++G +L ++
Sbjct: 355 FDFSDLDAMRQGIERILNEKSPLRIKDLAVNGRDLIAIGFRSGPEMGRMLELLLDAVLDD 414
Query: 396 SFQLSQEDLHHLLRKLIASSQ 416
S + + L + + + +
Sbjct: 415 SVKNDRVALLKIAEEYLMDRE 435
>gi|327385606|gb|AEA57080.1| Poly A polymerase [Lactobacillus casei BD-II]
Length = 398
Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats.
Identities = 98/406 (24%), Positives = 170/406 (41%), Gaps = 22/406 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I IL + ++ VGG+VRD+++ L + D+DIA++ P + RIF +T
Sbjct: 11 KAAIPILKKIEAAGYEAYFVGGSVRDAILGLPIHDVDIASSAYPAEIKRIFKRTA----D 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ +++TT R++ R V F R D RRDFTINAL
Sbjct: 67 TGIEHGTVMVLDHGTGYEVTTFRTESRYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVR 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G +ID GL DL++ ++ +G+ H R ED LR++R RF + G I+ A
Sbjct: 127 HDGTIIDLFDGLKDLQHHQLRAVGNPHERFHEDALRMMRAVRFESQLGF-GIEPATKAAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQLSQV 249
K L +S ER+ +E N+LL + + +F + E +L Q SQ+
Sbjct: 186 ADNAKLLVHISVERVAAEFNRLLTGIDRRAGLQDFIETRLFAYAPKMAAHETALTQFSQL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ ++ SL + + + L M K + E+ + +
Sbjct: 246 ------PDTQLTSLASGWAALIFLLRTQPLVMLKAWKQSNELITLVTQTVKLLQVMPNPT 299
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ Y G+ + ++ L D + + + + K LTG D
Sbjct: 300 AWD----LYQAGEAAVTTASEVQKLLT----PDFDQQQLAEAYAALPIHSKKELALTGAD 351
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+K G+ PG +G L +Q + + + L + ++
Sbjct: 352 QIKAGVRPGPAMGKALNQIEQRVVAGALPNELKKLLPIATEMSQDR 397
>gi|257898840|ref|ZP_05678493.1| poly A polymerase [Enterococcus faecium Com15]
gi|257836752|gb|EEV61826.1| poly A polymerase [Enterococcus faecium Com15]
Length = 402
Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats.
Identities = 85/399 (21%), Positives = 157/399 (39%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F K I
Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFP----KTIDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F R + D RRDFTINA +
Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLEEDLKRRDFTINAFALKED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G+ H R ED LR++R RF + G K +
Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFKLEEETFYAIKEN 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ KI I LL + + L + +L + +++
Sbjct: 189 HELLGKISVERINVEFIKMLLGNERSAGIHAFIETECYICCPGLREEGEALLRFAELPSV 248
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E + +LL + + I S K + ++ + + +KT +
Sbjct: 249 PLKEESQAWTLLISQL---DLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRKTGVLEP 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G + + ++ + + + + G +++
Sbjct: 306 F--ELYFLGKEHALQVEELMTYFDETP----HMDVVEESYDRLPIKSLSELAIDGKILLE 359
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G PGK V L ++ + + ++ + L K
Sbjct: 360 ESGKKPGKWVSEALQSAEKAVVEQRIENDKKQVLDFLSK 398
>gi|315222652|ref|ZP_07864541.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Streptococcus anginosus F0211]
gi|315188338|gb|EFU22064.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Streptococcus anginosus F0211]
Length = 399
Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats.
Identities = 101/400 (25%), Positives = 175/400 (43%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+N + D+DIA++ P+ RIF + I
Sbjct: 12 EALPVLKKIKNAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKRIFE----RTIDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ +++TT R++ + R + V F R K D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLEDNHEYEVTTFRTEDIYVDYRRPSHVTFVRSLKEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G VID GL+DL+ + ++ +G R ED LRI+R FRF A G ++D+D A
Sbjct: 128 AGNVIDLFEGLDDLKQQILRAVGTPSERFNEDALRIMRGFRFQASLGF-SLDTDTFQAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
LK +S ER + E +KLL A + + G L S QL + +
Sbjct: 187 MCAPLLKKISVERTFIEFDKLLTASYWRKGLKSLLASGATDY--LPDMRSSQSQLKTMFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ F++ S + L+ ++ K + E + + ++ +
Sbjct: 245 IKVDFQFT-SSEQAWATLLMALQVNNVKKFLKHWKTSNEFQKRVEQIVTIYNIRQRHFLD 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + Y + +MI +I A D I + K + G ++
Sbjct: 304 K--EECYRFELDLMIQAEEIRQAQGLA----VDFEKIHSTYDSLTIHDKHEIVVNGGLLI 357
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
K +G PG +G +L + +N E + + +
Sbjct: 358 KEFGFKPGPALGQLLTEIETAIVNGVLDNRLEAILAFVEE 397
>gi|110800095|ref|YP_694495.1| polyA polymerase family protein [Clostridium perfringens ATCC
13124]
gi|110674742|gb|ABG83729.1| polyA polymerase family protein [Clostridium perfringens ATCC
13124]
Length = 424
Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats.
Identities = 100/417 (23%), Positives = 177/417 (42%), Gaps = 25/417 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ IL N ++ IVGG VRDSL+N QD DI T P+++ +F K IPT
Sbjct: 8 NVQYILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFD----KTIPT 63
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ K +++TT R + + + + V F + + D RRDFTINA+
Sbjct: 64 GIKHGTVTVLIDKNPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
D G +DL+N+ I+ +GD R ED LR+LR RF I+ +
Sbjct: 124 YLGFKDCFNGKDDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQLNF-KIEKLTAESIR 182
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-------D 244
K K +K +S ERI SE K++ + +P ++ + G + + + + L D
Sbjct: 183 KNFKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYD 242
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ K+ L + + + ++ + + N N
Sbjct: 243 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVEN 302
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT----------CFILQVLSD 354
+S +K L + V + L L + L++ D + +L+
Sbjct: 303 INNISCNMTRKKLKLLINSVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILAS 362
Query: 355 IIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+TG+D++ + PGK +G IL + + + ++EDL +L ++
Sbjct: 363 KEPIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 419
>gi|261207587|ref|ZP_05922272.1| polynucleotide adenylyltransferase [Enterococcus faecium TC 6]
gi|289565099|ref|ZP_06445552.1| tRNA CCA-pyrophosphorylase [Enterococcus faecium D344SRF]
gi|294614839|ref|ZP_06694734.1| cca-adding enzyme [Enterococcus faecium E1636]
gi|294617518|ref|ZP_06697149.1| cca-adding enzyme [Enterococcus faecium E1679]
gi|260077970|gb|EEW65676.1| polynucleotide adenylyltransferase [Enterococcus faecium TC 6]
gi|289163106|gb|EFD10953.1| tRNA CCA-pyrophosphorylase [Enterococcus faecium D344SRF]
gi|291592301|gb|EFF23915.1| cca-adding enzyme [Enterococcus faecium E1636]
gi|291596258|gb|EFF27520.1| cca-adding enzyme [Enterococcus faecium E1679]
Length = 402
Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats.
Identities = 85/399 (21%), Positives = 159/399 (39%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F K I
Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFP----KTIDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F R D RRDFTINA +
Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLAEDLKRRDFTINAFALKED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G+ H R ED LR++R RF + G K +
Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFKLEEETFYAIKEN 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ KI I LL + + L + +L + +++
Sbjct: 189 HELLGKISVERINVEFIKMLLGNERAAGIHAFIETECYICCPSLKEEGEALLRFAELPSV 248
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E ++ +LL + + I S K + ++ + + ++T ++
Sbjct: 249 PLKEESQVWTLLISQLGLKEN---EIRSFLKSWKCSNQMIKDVQALVQGLRQRETGALEP 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G K + ++ + + + + + G +++
Sbjct: 306 F--ELYFLGKKHALQVEELMIYFDETP----QMDAVGESYDRLPIKSLSELAVDGKILLE 359
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G PGK V L ++ + + ++ + L K
Sbjct: 360 ETGKKPGKWVSEALQLAEKAVVEQRIKNDKKQVLDFLSK 398
>gi|168217734|ref|ZP_02643359.1| polyA polymerase family protein [Clostridium perfringens NCTC 8239]
gi|182380205|gb|EDT77684.1| polyA polymerase family protein [Clostridium perfringens NCTC 8239]
Length = 422
Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats.
Identities = 100/417 (23%), Positives = 176/417 (42%), Gaps = 25/417 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ IL N ++ IVGG VRDSL+N QD DI T P+++ +F K IPT
Sbjct: 6 NVQYILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFD----KTIPT 61
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ K +++TT R + + + + V F + + D RRDFTINA+
Sbjct: 62 GIKHGTVTVLIDKNPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 121
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
D G DL+N+ I+ +GD R ED LR+LR RF I+ +
Sbjct: 122 YLGFKDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQLNF-KIEKLTAESIR 180
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-------D 244
K K +K +S ERI SE K++ + +P ++ + G + + + + L D
Sbjct: 181 KNFKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYD 240
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ K+ L + + + ++ + + N N
Sbjct: 241 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVEN 300
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT----------CFILQVLSD 354
+S +K L + V + L L + L++ D + +L+
Sbjct: 301 INNISCNMTRKKLKLLINAVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILAS 360
Query: 355 IIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+TG+D++ + PGK +G IL + + + ++EDL +L ++
Sbjct: 361 KEPIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 417
>gi|332366640|gb|EGJ44383.1| polyA polymerase family protein [Streptococcus sanguinis SK1059]
Length = 399
Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats.
Identities = 101/400 (25%), Positives = 179/400 (44%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFE----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL+DL NR ++ +G A R ED LRI+R FRF A +++ D A
Sbjct: 128 NGQVIDLFQGLDDLENRILRAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFAAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + E D++E S +L ++ +
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEAL-LTSGAIEFLPDLKE-SRAKLERLFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + + L+ D +++ KK+ RE + + +
Sbjct: 245 LASDFRFSASE-QAWAALLLALDVQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLLQAEELRQAQGLAVDFSAIQNLDASMTIHSKQEMVVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++G PG K+G IL + ++ E ++ + +
Sbjct: 358 REFGFEPGPKLGQILKELEYAIVDGHLPNDLEAIYAYIEE 397
>gi|110802983|ref|YP_697371.1| polyA polymerase family protein [Clostridium perfringens SM101]
gi|110683484|gb|ABG86854.1| polyA polymerase family protein [Clostridium perfringens SM101]
Length = 422
Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats.
Identities = 99/417 (23%), Positives = 176/417 (42%), Gaps = 25/417 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ IL + ++ IVGG VRDSL+N QD DI T P+++ +F K IPT
Sbjct: 6 NVQYILEKFDSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFD----KTIPT 61
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ K +++TT R + + + + V F + + D RRDFTINA+
Sbjct: 62 GIKHGTVTVLIDKTPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 121
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
D G DL+N+ I+ +GD R ED LR+LR RF I+ +
Sbjct: 122 YLGFKDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQLNF-KIEKLTAESIR 180
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-------D 244
K K +K +S ERI SE K++ + P ++ + G + + + + L D
Sbjct: 181 KNFKLIKNISMERIQSEFTKIILSNEPDRGLMLLRKLGFSDFLVKEFKNLKLINCYDLYD 240
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ K+ L + + + ++ + + N N
Sbjct: 241 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVEN 300
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT----------CFILQVLSD 354
++S +K L + V + L L + L++ D + +L+
Sbjct: 301 INSISCNMTRKKLKLLINSVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILAS 360
Query: 355 IIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+TG+D++ + PGK +G IL + + + ++EDL +L ++
Sbjct: 361 KEPIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 417
>gi|325571124|ref|ZP_08146696.1| poly A polymerase [Enterococcus casseliflavus ATCC 12755]
gi|325156209|gb|EGC68395.1| poly A polymerase [Enterococcus casseliflavus ATCC 12755]
Length = 404
Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats.
Identities = 86/403 (21%), Positives = 166/403 (41%), Gaps = 16/403 (3%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L + ++ VGG+VRD+++ + D+DIAT+ P + +F + I
Sbjct: 12 EAAPLLKKIEAAGYEAYFVGGSVRDTILGQPIHDVDIATSAFPAEIKALFP----RTIDI 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++ITT R++ R KV F R K D RRDFTINAL +
Sbjct: 68 GIEHGTVLVLWEQAQYEITTFRTEAAYQDYRRPDKVDFVRSLKEDLKRRDFTINALALQE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID GL D+ N+ ++ +G R ED LR++R RF + G ++++ L A
Sbjct: 128 DGVIIDLFDGLADIDNQILRAVGHPQERFHEDALRMMRGLRFVSQLGFV-LETETLAAIH 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L +S ERI E KLL + A+ + ++E + L ++ +
Sbjct: 187 ANHALLGKISVERIMIEFVKLLLGNHRNQALRALVE-TECYIYCPGLREYG-EALLRMAD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ + ++ +++ S K + + + + + ++
Sbjct: 245 LPAIPLENETTAWVLLIDQIGLAPEAVRSFLKAWKCSNDCIRQVQTVYQALLMRRNGEWN 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
++ L Y +G + + L + D I Q + + G D++
Sbjct: 305 DL--LLYQFGLEATC----LAEGLLRYDKLPNDPAKISQRYQQLPIHSLKELAINGRDLL 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G + +L + I +E L ++ +A
Sbjct: 359 QTIDRSSGPWLKEVLTAAEAAVITRKIPNEKEALLAFVQAYLA 401
>gi|293556746|ref|ZP_06675309.1| cca-adding enzyme [Enterococcus faecium E1039]
gi|291601078|gb|EFF31367.1| cca-adding enzyme [Enterococcus faecium E1039]
Length = 402
Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats.
Identities = 85/399 (21%), Positives = 158/399 (39%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F K I
Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFP----KTIDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F R D RRDFTINA +
Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLAEDLKRRDFTINAFALKED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G+ H R ED LR++R RF + G K +
Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFKLEEETFYAIKEN 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ KI I LL + + L + +L + +++
Sbjct: 189 HELLGKISVERINVEFIKMLLGNERAAGIHAFIETECYICCPGLKEEGEALLRFAELPSV 248
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E + +LL + + I S K + ++ + + ++T ++
Sbjct: 249 TLKEESQAWTLLISQL---DLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRETGALEP 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G K + ++ + + + + + G +++
Sbjct: 306 F--ELYFLGKKHALQVEELMIYFDETP----QMDAVGESYDRLPIKSLSELAVDGKILLE 359
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G PGK V L ++ + + ++ + L K
Sbjct: 360 ETGKKPGKWVSEALQLAEKAVVEQRIKNDKKQVLDFLSK 398
>gi|291529448|emb|CBK95034.1| uncharacterized domain HDIG [Eubacterium rectale M104/1]
Length = 451
Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats.
Identities = 98/444 (22%), Positives = 181/444 (40%), Gaps = 53/444 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I+ L ++ +VGG VRDS++ V D DI T+ PD + ++FS T K+I
Sbjct: 10 KGAAAIIDTLQSNGFEAYLVGGCVRDSILKRPVHDWDITTSATPDEMKKVFSDT--KIIE 67
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYAD 130
T I +GT+ I+ +++ TT R D +DGR+ + FT+ D RRDFTINA+ +
Sbjct: 68 TGIKHGTLTILSVDGFYECTTYRIDGAYSDGRHPDMVRFTKSLAEDLKRRDFTINAMAYN 127
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +ID GG DL + I+ +G+ R ED LRI+R RF A E +++ +A+
Sbjct: 128 DKEGLIDLFGGRLDLMDHVIRCVGNPEDRFKEDALRIMRALRFAAQL-EFDLEMKTKIAA 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L +S+ERI SE K+L I I +++++ + +
Sbjct: 187 FQMSDTLTKVSAERINSEFCKILTQPMGSQVIN--NYKEIIAVFIPEIRDMFDFEQNNPY 244
Query: 251 EAEQVFEWKIDSL-----------------------------------LRFIVLISWQDK 275
V++ I+ L +R + +
Sbjct: 245 HMFNVWDHTIEVLARAALFMDPNNLALTLAAFFHDIGKPHSYQDGPDGIRHFYSHAAKSA 304
Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335
+ + S+ ++ IR +++ + IK+ + ++ L +
Sbjct: 305 EMVDSIMRRMRFNNSIREQVVTLVKYHDADIKPEAKYIKRWLNKLDSESLLKCLFMLKYA 364
Query: 336 HYNNLTHQDTCFILQ-----------VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNI 384
+ + L+ +L + + G+D++ G+ PGK++G I
Sbjct: 365 DISGQAIKGRTERLKVINHLFAVRCDILKQQACFSLKDLAVNGNDLIAAGMKPGKEIGAI 424
Query: 385 LVHCKQEWINSSFQLSQEDLHHLL 408
L + +N ++ L +
Sbjct: 425 LNQMLELVLNDECANDKDALFKAV 448
>gi|257878003|ref|ZP_05657656.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,230,933]
gi|257881211|ref|ZP_05660864.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,502]
gi|257889798|ref|ZP_05669451.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,410]
gi|257892265|ref|ZP_05671918.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,408]
gi|260559053|ref|ZP_05831239.1| polynucleotide adenylyltransferase [Enterococcus faecium C68]
gi|293563404|ref|ZP_06677853.1| cca-adding enzyme [Enterococcus faecium E1162]
gi|293568062|ref|ZP_06679400.1| cca-adding enzyme [Enterococcus faecium E1071]
gi|294621944|ref|ZP_06701092.1| cca-adding enzyme [Enterococcus faecium U0317]
gi|257812231|gb|EEV40989.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,230,933]
gi|257816869|gb|EEV44197.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,502]
gi|257826158|gb|EEV52784.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,410]
gi|257828644|gb|EEV55251.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,408]
gi|260074810|gb|EEW63126.1| polynucleotide adenylyltransferase [Enterococcus faecium C68]
gi|291589283|gb|EFF21093.1| cca-adding enzyme [Enterococcus faecium E1071]
gi|291598493|gb|EFF29562.1| cca-adding enzyme [Enterococcus faecium U0317]
gi|291604665|gb|EFF34150.1| cca-adding enzyme [Enterococcus faecium E1162]
Length = 402
Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats.
Identities = 85/399 (21%), Positives = 158/399 (39%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F K I
Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFP----KTIDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F R D RRDFTINA +
Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLAEDLKRRDFTINAFALKED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G+ H R ED LR++R RF + G K +
Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFKLEEETFYAIKEN 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ KI I LL + + L + +L + +++
Sbjct: 189 HELLGKISVERINVEFIKMLLGNERAAGIHAFIETECYICCPGLKEEGEALLRFAELPSV 248
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E + +LL + + I S K + ++ + + ++T ++
Sbjct: 249 PLKEESQAWALLISQL---DLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRETGALEP 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G K + ++ + + + + + G +++
Sbjct: 306 F--ELYFLGKKHALQVEELMIYFDETP----QMDAVGESYDRLPIKSLSELAVDGKILLE 359
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G PGK V L ++ + + ++ + L K
Sbjct: 360 ETGKKPGKWVSEALQLAEKAVVEQRIKNDKKQVLDFLSK 398
>gi|229826592|ref|ZP_04452661.1| hypothetical protein GCWU000182_01967 [Abiotrophia defectiva ATCC
49176]
gi|229789462|gb|EEP25576.1| hypothetical protein GCWU000182_01967 [Abiotrophia defectiva ATCC
49176]
Length = 403
Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats.
Identities = 104/401 (25%), Positives = 174/401 (43%), Gaps = 16/401 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+S L K ++ VGG VRDS+++ +D DI T+ P+ V ++F I T
Sbjct: 9 VKYIISRLEKNGYEAYAVGGCVRDSILDRIPEDWDITTSAKPEEVKKLFPA----TIDTG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQ 132
+ +GT+ ++ K+ +++TT R D +DGR+ V FT D RRDFTINA+ +
Sbjct: 65 LQHGTVTVVIEKEGYEVTTFRLDGDYSDGRHPDRVAFTSSLTEDLKRRDFTINAMAYSEI 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ID G DL + I+ +GDA R ED LR+LR RF +I A K
Sbjct: 125 TGLIDRFDGEKDLEDGIIRAVGDAEERFSEDALRMLRAIRFAGQLNF-DIAEKTFDAIKK 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----SLDQLSQ 248
+ +S ERI E+ KLL + NP I +Y GIF+ I ++ + + +
Sbjct: 184 LSPNISKVSVERIAKELEKLLLSGNP-EYIGLVYEAGIFEVIAPEIAALFDKGEIYNSIK 242
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ E K +R + + S + K+F L + + +
Sbjct: 243 AVSCTSYPEKKELYQIRTALFLERLGADSAAKLLKRFKLDNDTINTVKKLIGLLQREVEA 302
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
S E+++ G K+M + A + + +L + G
Sbjct: 303 SALEMRRTVKEAGHKIMPLLFEARRAKALTDSSK----LYENLLVRGECTDIAGLKVNGK 358
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D+++ GIP G +G L + I + ++E L ++
Sbjct: 359 DLMEAGIPKGIMIGQTLERLLELVIENPELNTREGLLSEVK 399
>gi|324992991|gb|EGC24911.1| polyA polymerase family protein [Streptococcus sanguinis SK405]
Length = 399
Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats.
Identities = 99/400 (24%), Positives = 178/400 (44%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ IF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLKRPIHDVDIASSSYPEETKHIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL+DL N+ ++ +G A R ED LRI+R FRF A +++ D VA
Sbjct: 128 NGQVIDLFQGLDDLENQILRAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFVAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + G FL + S +L ++ +
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGA--IEFLPDLKGSRAKLERLFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + + L+ D + + + K + RE + + +
Sbjct: 245 LASDFRFSASE-QAWAALLLDLDVQDVKGILKDWKTSREFAKKVEDLVEIAAFRSERDLS 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLLQAEELRQAQGLAVDFSAIQNLDASLTIHSKQEMVVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++G PG K+G IL + ++ E ++ +++
Sbjct: 358 REFGFEPGPKLGQILKELEYAIVDGHLPNELEVIYAYIKE 397
>gi|258616510|ref|ZP_05714280.1| poly A polymerase [Enterococcus faecium DO]
Length = 402
Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats.
Identities = 85/399 (21%), Positives = 158/399 (39%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F K I
Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFP----KTIDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F R D RRDFTINA +
Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLSEDLKRRDFTINAFALKED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G+ H R ED LR++R RF + G K +
Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFKLEEETFYAIKEN 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ KI I LL + + L + +L + +++
Sbjct: 189 HELLGKISVERINVEFIKMLLGNERAAGIHAFIETECYICCPGLKEEGEALLRFAELPSV 248
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E + +LL + + I S K + ++ + + ++T ++
Sbjct: 249 PLKEESQAWALLISQL---DLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRETGALEP 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G K + ++ + + + + + G +++
Sbjct: 306 F--ELYFLGKKHALQVEELMIYFDETP----QMDAVGESYDRLPIKSLSELAVDGKILLE 359
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G PGK V L ++ + + ++ + L K
Sbjct: 360 ETGKKPGKWVSEALQLAEKAVVEQRIKNDKKQVLDFLSK 398
>gi|257884874|ref|ZP_05664527.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,501]
gi|257820712|gb|EEV47860.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,501]
Length = 402
Score = 196 bits (497), Expect = 8e-48, Method: Composition-based stats.
Identities = 85/399 (21%), Positives = 160/399 (40%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F K I
Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFP----KTIDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F R D RRDFTINA +
Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLAEDLKRRDFTINAFALKED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G+ H R ED LR++R RF + G K +
Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFKLEEETFYAIKEN 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ KI I LL + + L + +L + +++
Sbjct: 189 HELLGKISVERINVEFIKMLLGNERAAGIHAFIETECYICCPGLKEEGEALLRFAELPSV 248
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E ++ +LL + + I S K + ++ + + ++T ++
Sbjct: 249 PLKEESQVWTLLISQLGLKEN---EIRSFLKSWKCSNQMIKDVQALVQGLRQRETGALEP 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G K + ++ + + + + + G +++
Sbjct: 306 F--ELYFLGKKHALQVEELMIYFDETP----QMDAVGESYDRLPIKSLSELAVDGKILLE 359
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G PGK V L ++ + + +++ + L K
Sbjct: 360 ETGKKPGKWVSEALQLAEKAVVEQRIKNNKKQVLDFLSK 398
>gi|256005025|ref|ZP_05429996.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium thermocellum DSM 2360]
gi|255990993|gb|EEU01104.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium thermocellum DSM 2360]
Length = 451
Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats.
Identities = 92/439 (20%), Positives = 160/439 (36%), Gaps = 54/439 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
D+ I+ LN K+ IVGG +RD+++ D D+AT P+ V IF K++
Sbjct: 11 KDVSYIIDTLNNRGFKAYIVGGCIRDAILGKVPADWDVATDAQPEDVKLIFD----KIVE 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
T I +GT+ + ++ITT R K D RDFTINA+ +
Sbjct: 67 TGIKHGTVTAVINGCNYEITTFR--------APSSAKIPTIKDDLGLRDFTINAMAYHPE 118
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ID G+ D+ I+ +G R ED LR+LR R + G ID L A +
Sbjct: 119 EGIIDPFLGMQDMEKSVIRAVGSPEDRFHEDPLRMLRAVRLSSTLGF-EIDRSVLSAIKE 177
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAI-------------VHMYNGGIFKEIFLDVQ 239
K ++ +S ERI E++K+L + P N + + V
Sbjct: 178 NCKLIEKVSPERIRDELSKILISDRPKNFLVLRETGLLKYVLPEFDICFDTGQNHPYHVY 237
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLR----------------FIVLISWQDKKSILSMAK 283
+ + L V E + LL + + K
Sbjct: 238 NVGMHTLETVSNIESNLVLRWTMLLHDIGKPVVKTTDQNGTDHFYGHPEESVNIADKIMK 297
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
+ + ++ + + + ++K + G + LK+ A Q
Sbjct: 298 RLRFDNKTTNKVLRLIKHHDRRIEPNQKSVRKAVSIIGKDIFPDLLKVQEADKKGQ-NPQ 356
Query: 344 DTCFILQVLSDII-----------HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
L+VL +I L G+D++ G +++G IL
Sbjct: 357 YLDERLKVLDEIKDIFFNLEKEGQILNLKDLALNGNDLLAMGFEQSREIGIILRELYNIV 416
Query: 393 INSSFQLSQEDLHHLLRKL 411
+++ ++E L ++ +
Sbjct: 417 LDNPEMNTKEKLTEIVENI 435
>gi|125973904|ref|YP_001037814.1| metal dependent phosphohydrolase [Clostridium thermocellum ATCC
27405]
gi|281418067|ref|ZP_06249087.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium thermocellum JW20]
gi|125714129|gb|ABN52621.1| metal dependent phosphohydrolase [Clostridium thermocellum ATCC
27405]
gi|281409469|gb|EFB39727.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium thermocellum JW20]
gi|316939893|gb|ADU73927.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium thermocellum DSM 1313]
Length = 442
Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats.
Identities = 92/439 (20%), Positives = 160/439 (36%), Gaps = 54/439 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
D+ I+ LN K+ IVGG +RD+++ D D+AT P+ V IF K++
Sbjct: 11 KDVSYIIDTLNNRGFKAYIVGGCIRDAILGKVPADWDVATDAQPEDVKLIFD----KIVE 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
T I +GT+ + ++ITT R K D RDFTINA+ +
Sbjct: 67 TGIKHGTVTAVINGCNYEITTFR--------APSSAKIPTIKDDLGLRDFTINAMAYHPE 118
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ID G+ D+ I+ +G R ED LR+LR R + G ID L A +
Sbjct: 119 EGIIDPFLGMQDMEKSVIRAVGSPEDRFHEDPLRMLRAVRLSSTLGF-EIDRSVLSAIKE 177
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAI-------------VHMYNGGIFKEIFLDVQ 239
K ++ +S ERI E++K+L + P N + + V
Sbjct: 178 NCKLIEKVSPERIRDELSKILISDRPKNFLVLRETGLLKYVLPEFDICFDTGQNHPYHVY 237
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLR----------------FIVLISWQDKKSILSMAK 283
+ + L V E + LL + + K
Sbjct: 238 NVGMHTLETVSNIESNLVLRWTMLLHDIGKPVVKTTDQNGTDHFYGHPEESVNIADKIMK 297
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
+ + ++ + + + ++K + G + LK+ A Q
Sbjct: 298 RLRFDNKTTNKVLRLIKHHDRRIEPNQKSVRKAVSIIGKDIFPDLLKVQEADKKGQ-NPQ 356
Query: 344 DTCFILQVLSDII-----------HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
L+VL +I L G+D++ G +++G IL
Sbjct: 357 YLDERLKVLDEIKDIFFNLEKEGQILNLKDLALNGNDLLAMGFEQSREIGIILRELYNIV 416
Query: 393 INSSFQLSQEDLHHLLRKL 411
+++ ++E L ++ +
Sbjct: 417 LDNPEMNTKEKLTEIVENI 435
>gi|170017048|ref|YP_001727967.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc citreum
KM20]
gi|226702072|sp|B1MYC1|CCA_LEUCK RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|169803905|gb|ACA82523.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc citreum
KM20]
Length = 403
Score = 195 bits (496), Expect = 9e-48, Method: Composition-based stats.
Identities = 96/413 (23%), Positives = 176/413 (42%), Gaps = 21/413 (5%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
S + ++ IL + ++ VGGAVRD L+N + D+DIAT+ P+ + +
Sbjct: 4 STLPQEFMQ---AQPILEHIESAGFEAYFVGGAVRDMLLNKPIHDVDIATSAFPEEIKAL 60
Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRR 120
F+ K + T I +GT+ ++ ++ITT R++ R KV F R D RR
Sbjct: 61 FT----KTVDTGIQHGTVMVLDHGDGYEITTFRTESTYTDFRRPDKVTFVRSLAEDLKRR 116
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
DFTINA+ + G +ID GL D+ + I+ +GDA R ED LRI+R RF A G
Sbjct: 117 DFTINAIAMTKDGDIIDLFDGLTDMAQKRIRAVGDAEVRFNEDALRIMRALRFSAQLGF- 175
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I A + + L+ ++ ERI E KLL + N++ + + + ++
Sbjct: 176 DIAPHTKAALKQIGRNLEKIAVERIRVEFEKLLMGQYASNSLSVAIEADLIRYLPGHIK- 234
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
D L+ + ++ + + + + + + RE ++S
Sbjct: 235 -KEDWLTITADLKRNQPQARTVIWPYFLSRLSLRLNELQLFMRSWKTSREDMRAVLSIVP 293
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ +T+S+ E+ ++ + +F L + Q+ +
Sbjct: 294 IVKHVQTVSVFELYAIYDY--------QALLFEVLTLIGTPLATQQRVKQIFDALPITHN 345
Query: 361 PLFPLTGDDVVKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
++G D++ I PG ++G IL + I + L ++L+
Sbjct: 346 RDMCISGGDLLANNIVTPGPQMGRILTQLEHAVIQRIISNRPDSLLEYAKELV 398
>gi|171778267|ref|ZP_02919473.1| hypothetical protein STRINF_00315 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282967|gb|EDT48391.1| hypothetical protein STRINF_00315 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 401
Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats.
Identities = 95/400 (23%), Positives = 171/400 (42%), Gaps = 16/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF + +
Sbjct: 12 EALPILKKIREAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKSIFH----RTVDI 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ITT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 68 GIEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID GL DL+ + ++ +G+ R ED LRI+R FRF A +I+ + A
Sbjct: 128 TGLIIDKFNGLADLKAKLLRAVGNPAERFNEDALRIMRGFRFSASLDF-DIEPETFAAMA 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ER + E +KLL A I M K + D L Q ++
Sbjct: 187 AHAPLLEKISVERSFIEFDKLLMAPFWRKGIKAMIASEAQKYLPHLENAH--DHLQQFLD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
S + L+ D K + + + + + + + + + T +
Sbjct: 245 DLADDYHFKTSEQAWAALLLALDVKDVRAFLRAWKTSSQFQKDVEKIVSIYRFRLTNELD 304
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+++ Y ++ L D I ++ ++ K + G ++
Sbjct: 305 KMEMYCY------GCNLIEQAEDLRLGFGLPVDFATIERLDKELTIHDKHEIVVNGGMLI 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
K PG ++G IL +Q + +E + +RK
Sbjct: 359 KEMQFKPGPELGQILKAIEQHIVLGELANDKEAIFEFIRK 398
>gi|18309004|ref|NP_560938.1| polyA polymerase family protein [Clostridium perfringens str. 13]
gi|18143679|dbj|BAB79728.1| probable polynucleotide adenylyltransferase [Clostridium
perfringens str. 13]
Length = 424
Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats.
Identities = 100/417 (23%), Positives = 176/417 (42%), Gaps = 25/417 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ IL N ++ IVGG VRDSL+N QD DI T P+++ +F K IPT
Sbjct: 8 NVQYILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFD----KTIPT 63
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ K +++TT R + + + + V F + + D RRDFTINA+
Sbjct: 64 GIKHGTVTVLIDKNPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
D G DL+N+ I+ +GD R ED LR+LR RF I+ +
Sbjct: 124 YLGFKDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQLNF-KIEKLTAESIR 182
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-------D 244
K K +K +S ERI SE K++ + +P ++ + G + + + + L D
Sbjct: 183 KNFKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYD 242
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ K+ L + + + ++ + + N N
Sbjct: 243 DIHDTYGLINSLPKKLHIRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVEN 302
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT----------CFILQVLSD 354
+S +K L + V + L L + L++ D + +L+
Sbjct: 303 INNISCNMTRKKLKLLINAVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILAS 362
Query: 355 IIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+TG+D++ + PGK +G IL + + + ++EDL +L ++
Sbjct: 363 KEPIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 419
>gi|158290773|ref|XP_312336.4| AGAP002600-PA [Anopheles gambiae str. PEST]
gi|157018058|gb|EAA08067.4| AGAP002600-PA [Anopheles gambiae str. PEST]
Length = 437
Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats.
Identities = 117/409 (28%), Positives = 197/409 (48%), Gaps = 14/409 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L ++++L + + + GGAVRD LMN++ +D+DIATT P + IF+K +
Sbjct: 33 IFTQELKDLIALFERYNFEIRVAGGAVRDILMNMNPKDVDIATTATPTEMKEIFTKENIR 92
Query: 70 VIP-TSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
++ +GTI + F+ITTLR D ITDGR+A+V+ T DW D+ RRD TIN++
Sbjct: 93 MVNMNGEKHGTITPRINDRENFEITTLRIDAITDGRHAEVIHTTDWLLDANRRDLTINSM 152
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSD 185
+ G + DY G DL+ R + F+GD RI EDYLRILR+FRF+ E D +
Sbjct: 153 FLGFDGTLYDYFYGYEDLQKRRVAFVGDPDMRIKEDYLRILRYFRFYGRIAEESNRHDEE 212
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L K +GL +S ERIW E K+L + M N + + L ++ +
Sbjct: 213 TLRIITKNAEGLARISGERIWQEWKKILSGNFGIELTEAMINCQLAPHMGLP-DAPNVPE 271
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+V + + F+ K+ + L++ + L+M KF++ + I+
Sbjct: 272 FLRVAKQVRSFDPKLQPITVLSALLNTPEDAVNLNMRLKFTVYERELCYFITQNREETAT 331
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+P + + + + L ++ ++ ++ W P FP+
Sbjct: 332 IDELLPFQQLCLQTISSVKLKKEYVLELLKYHGK---------RELYQQLLDWPIPQFPI 382
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
G+ ++ G P G K+G +L K W N+ + ++QE L L ++
Sbjct: 383 KGNVLIANGAPKGPKLGVVLDRLKIIWSNNQYNMTQEQLLEHLPAVLEE 431
>gi|317497212|ref|ZP_07955536.1| poly A polymerase head domain-containing protein [Lachnospiraceae
bacterium 5_1_63FAA]
gi|316895457|gb|EFV17615.1| poly A polymerase head domain-containing protein [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 448
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 83/442 (18%), Positives = 159/442 (35%), Gaps = 51/442 (11%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ L + ++ IVGG VRDS++ + D DI T+ P V IF + T
Sbjct: 8 QAAKVIQTLEQHGFEAYIVGGCVRDSILGRTPGDWDITTSASPQEVKEIFDH----TVDT 63
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R R +V FT+ + D LRRDFTINA+ +
Sbjct: 64 GIEHGTVTVLMNHEPYEVTTYRVDGKYEDHRRPNEVHFTKSLREDLLRRDFTINAMAYND 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ID G+ DL+N+TI+ +G+A R ED LRILR RF A G + +
Sbjct: 124 SEGIIDMYDGMTDLKNQTIRCVGEAKKRFDEDALRILRALRFQAQLGFQIEEKTEEAIKN 183
Query: 192 KAKKGLKILSSERIWS--------------EINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+AK I + KL K M
Sbjct: 184 QAKFLKDISAERIQVELEKLITSAHPEVLVNAYKLGVTKIIFPEFDIMMETPQNNPHH-- 241
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLR---------------FIVLISWQDKKSILSMA 282
+ + + + + + ++ LL + ++ +
Sbjct: 242 KYNVGIHTVEAMKQIKAEHIYRWTMLLHDVGKPTARVEGPDKDHFKMHPVIGEEMARKIL 301
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
++ + + + + + KK + ++ + + +++
Sbjct: 302 RRLKFDNQTIKQVTTLVRWHDRRFASIEEVNKKTVRRWVSQLTPELFTRLMEVQKADISA 361
Query: 343 QD--------------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
Q +++ + + G D++ G+P GK++G IL
Sbjct: 362 QSDYQRDKKEQVLQETKKLFEEIIEEKNCLSIKELKINGKDLMDMGVPQGKEIGQILSWL 421
Query: 389 KQEWINSSFQLSQEDLHHLLRK 410
+ + +E L + +
Sbjct: 422 LDQVLEDPQLNERETLTRMAEE 443
>gi|157150439|ref|YP_001450406.1| tRNA CCA-pyrophosphorylase [Streptococcus gordonii str. Challis
substr. CH1]
gi|189081882|sp|A8AX96|CCA_STRGC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|157075233|gb|ABV09916.1| polynucleotide adenylyltransferase [Streptococcus gordonii str.
Challis substr. CH1]
Length = 399
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 99/400 (24%), Positives = 176/400 (44%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G++ID GL+DL NR ++ +G R ED LRI+R FRF A +++ D L A
Sbjct: 128 NGQLIDLFQGLDDLENRILRAVGTPAERFNEDALRIMRGFRFQATLNF-DLEQDTLSAMT 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + G FL + S +L Q+ E
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGA--IEFLPDLKGSRAKLEQLFE 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ F + + L+ + + + + RE + + +
Sbjct: 245 LDSDFCFSASE-QAWAALLLALKTQEVQRFLRIWKTSREFAKRVADIVEIVTIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLLQAEELRQAQGLAVDFSAIHNLDASLTIHSKQEMVVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+G PG K+G IL + ++ E ++ +++
Sbjct: 358 RDFGFEPGPKLGQILKELEYAIVDGHLPNDLEAIYAYIKE 397
>gi|169343380|ref|ZP_02864384.1| polyA polymerase family protein [Clostridium perfringens C str.
JGS1495]
gi|169298466|gb|EDS80552.1| polyA polymerase family protein [Clostridium perfringens C str.
JGS1495]
Length = 422
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 99/417 (23%), Positives = 176/417 (42%), Gaps = 25/417 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ IL N ++ IVGG VRDSL+N QD DI T P+++ +F K IPT
Sbjct: 6 NVQYILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFD----KTIPT 61
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ K +++TT R + + + + V F + + D RRDFTINA+
Sbjct: 62 GIKHGTVTVLIDKNSYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 121
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
D G DL+N+ I+ +G+ R ED LR+LR RF I+ +
Sbjct: 122 YLGFKDCFNGKEDLKNKLIRCVGNPDKRFSEDALRMLRAIRFSCQLNF-KIEKLTAESIR 180
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-------D 244
K K +K +S ERI SE K++ + +P ++ + G + + + + L D
Sbjct: 181 KNFKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYD 240
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ K+ L + + + ++ + + N N
Sbjct: 241 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVEN 300
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT----------CFILQVLSD 354
+S +K L + V + L L + L++ D + +L+
Sbjct: 301 INNISCNMTRKKLKLLINAVGTENIFNLLDLQKSYLSYMDEYDTECIDILKNRVSDILAS 360
Query: 355 IIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+TG+D++ + PGK +G IL + + + ++EDL +L ++
Sbjct: 361 KEPIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 417
>gi|188588229|ref|YP_001920923.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Clostridium botulinum E3 str. Alaska E43]
gi|188498510|gb|ACD51646.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Clostridium botulinum E3 str. Alaska E43]
Length = 432
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 97/427 (22%), Positives = 189/427 (44%), Gaps = 38/427 (8%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
D+ IL L ++ IVGG VRDS++N +D DI T P+ V+++F+ KVI T
Sbjct: 10 DVRFILETLKNNGHEAYIVGGCVRDSILNNIPKDWDITTKARPEEVVKLFN----KVILT 65
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQ 131
+ +GT+ ++ + +++TT R D + R+ K F + K D RRDFTINA+ ++
Sbjct: 66 GVKHGTVTVLINSEGYEVTTYRMDGKYEDSRHPKQVNFVSNLKEDLARRDFTINAMAYNK 125
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ +IDY G++DL+ + IK +G++ R ED LR+LR RF + +I ++ L +
Sbjct: 126 EDGLIDYFEGVSDLKKKVIKTVGNSEKRFSEDALRMLRAIRFSSQLDF-SISNETLNSIK 184
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ +K +S ERI E NK+L + I + G+ + IF ++ + ++ +
Sbjct: 185 NLRYNIKNISKERIREEFNKILLSS--TKGIDILIETGLIEHIFPEIIKFCDFKVDNMYY 242
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKK------------------SILSMAKKFSLPREIRY 293
+ ++ + ++ + + + K+F
Sbjct: 243 NDNLYAHTVRAIEEIESALHLKLTMFFYNLIRINNEDIEYTILQVKEFLKEFQYDNNTVN 302
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF------ 347
+ + N + EIK++ L + LK+ A +
Sbjct: 303 KVTTLILY-MNNDLNTKLEIKQILNLINLDLFEDLLKVKEAEILSQNPLYKEKRLSHLLS 361
Query: 348 ----ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED 403
+ ++L + + + G D++ G+ GK +G +L + +N+ +E
Sbjct: 362 IRENLKEILLNKECFNLKDLSINGKDLINLGLEKGKNIGEMLNELLELVMNNPDLNDKEI 421
Query: 404 LHHLLRK 410
L ++++
Sbjct: 422 LIDIVKE 428
>gi|325694589|gb|EGD36498.1| polyA polymerase family protein [Streptococcus sanguinis SK150]
Length = 399
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 100/400 (25%), Positives = 179/400 (44%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL+DL N+ ++ +G A R ED LRI+R FRF A +++ D A
Sbjct: 128 NGQVIDLFQGLDDLENQILRAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFAAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + G FL + S +L ++ +
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGA--IEFLPDLKGSRAKLERLFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + + L+ D +++ KK+ RE + + +
Sbjct: 245 LASDFRFSASE-QAWAALLLALDVQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLLQAEELRQAQGLAVDFSAIQNLDASLTIHNKQEMVVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++G PG K+G IL + ++ E ++ +++
Sbjct: 358 QEFGFEPGPKLGQILKELEHAIVDGCLPNELEAIYAYIKE 397
>gi|329114174|ref|ZP_08242936.1| CCA-adding enzyme [Acetobacter pomorum DM001]
gi|326696250|gb|EGE47929.1| CCA-adding enzyme [Acetobacter pomorum DM001]
Length = 413
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 107/387 (27%), Positives = 178/387 (45%), Gaps = 17/387 (4%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
++ +VGG VRD ++ ++ D+D+A P+ VM+ V+PT +++GT+ +
Sbjct: 42 EARLVGGVVRDLMVGRAIADVDLAVPQPPEEVMQGLKAQGITVVPTGLAHGTVTAVIDSA 101
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
++ITTLR D+ TDGR+A V +T +W+ D+ RRDFTINA+ D G V DY GG DL
Sbjct: 102 PYEITTLRRDVETDGRHAVVCWTDNWQEDAARRDFTINAMSCDSTGAVHDYFGGQQDLAE 161
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
T++F+GDA RI ED LRILRFFRF+ YG+ D+ + A L LS ER+WS
Sbjct: 162 GTVRFVGDATLRIQEDALRILRFFRFWGRYGQGRADAQAMQAITAQAALLNGLSVERVWS 221
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267
E+ ++L + + M GI + + + L ++++ + +
Sbjct: 222 ELKRILAGPKAQDVVYLMQQAGILPVLLPEGANVPL--FARLMAF--------NPPADAL 271
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
+ ++ MA++ R L + +S
Sbjct: 272 LRLAALVPNKSADMARRLKFSRAEAARLKAMQAEPVPLPKMSD----AQLRHLLADTPPD 327
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
L LH + + Q L+ + P+FP+ G D+++ G PG VG +L
Sbjct: 328 ILAARSWLHQARYSDVLGEELRQRLARLE---IPVFPIAGRDLLEAGCQPGPHVGQVLKD 384
Query: 388 CKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ W ++ +L+ +
Sbjct: 385 VRNWWQQGGCSADKQACLAYALELVKA 411
>gi|261417981|ref|YP_003251663.1| tRNA CCA-pyrophosphorylase [Geobacillus sp. Y412MC61]
gi|319767207|ref|YP_004132708.1| polynucleotide adenylyltransferase region protein [Geobacillus sp.
Y412MC52]
gi|261374438|gb|ACX77181.1| Polynucleotide adenylyltransferase region [Geobacillus sp.
Y412MC61]
gi|317112073|gb|ADU94565.1| Polynucleotide adenylyltransferase region protein [Geobacillus sp.
Y412MC52]
Length = 404
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 94/401 (23%), Positives = 170/401 (42%), Gaps = 14/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+ L + ++ VGGAVRD L+ + D+DIAT+ LP+ VMR+F K I
Sbjct: 6 EQALGIIRQLKRHGYEAYFVGGAVRDLLIGRPIGDVDIATSALPEEVMRLFP----KTID 61
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GT+ ++ +++TT R D R V F R + D RRDFT+NA+ D
Sbjct: 62 VGSKHGTVVVVHEGTAYEVTTFRTDGDYEDHRRPESVTFVRSLEEDLKRRDFTMNAIAMD 121
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++G +ID GG + R I +G A R ED LR++R RF + G + D A
Sbjct: 122 ERGTIIDPFGGQEAIERRLICTVGAADERFREDALRMMRAVRFVSQLGF-ALAEDTKSAI 180
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
++ + +S ER+ E+ KLL A+ + + G+F + + L + +
Sbjct: 181 VQNAPLMAHISVERMTMEMEKLLAGPFVAEALPLLADTGLFAYLPGLAAKEQLLRSAAAF 240
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + + L D K I + + LP ++ + +
Sbjct: 241 RWPWLTKREERWALLCRA----LDVKDIRPFLRAWKLPNKVIDEAGAILA-ALDDVPRPE 295
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ + G + ++ + AL + + + + + K + G DV
Sbjct: 296 AWTNEQLFSAGLERALSVEAVRAALCGAP-SEPHHEELRRRFAALPIKTKGELAVNGKDV 354
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+++ G P G V L + ++S + +E ++ L +
Sbjct: 355 IRWAGKPAGPWVKETLDAIWRAVVSSEVENEKERIYAWLME 395
>gi|316966728|gb|EFV51271.1| poly(A) polymerase [Trichinella spiralis]
Length = 750
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 121/409 (29%), Positives = 205/409 (50%), Gaps = 21/409 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
L+ I L K + I GGAVRD L+N+ DID+ATT P+ + ++F + +V+
Sbjct: 47 TPPLMEIKQLFEKKGYEIRIAGGAVRDLLLNIIPVDIDLATTARPEEMNQLFLENSIRVL 106
Query: 72 PT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GT+ +++ F+ITTLR D GR+A+V FT DW D+ RRD T+N+++ D
Sbjct: 107 NKGGEKHGTVTCRIQEQNFEITTLRVDKFCHGRHAEVEFTTDWFLDASRRDLTVNSMFMD 166
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDGLV 188
G V DY GG++DL+ R I F+GD + RI EDYLRILR+FRF+ +K+ D L
Sbjct: 167 FDGTVYDYFGGVDDLKKRRILFVGDPNQRIQEDYLRILRYFRFYGRLSDKSDEHDLSTLS 226
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A +GL +S ERIW E+ +++ + + I M++ GI+ I L + ++ ++
Sbjct: 227 AIKHNAEGLSSISGERIWLELKRIVVGRYGHSVIATMFDCGIYPYIGLP-KNPPIENFAE 285
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
V + F+ L ++ ++++ I + + L E R K +
Sbjct: 286 VFITAEAFK----PLSITMISALLENEQQICDLNSRLKLSTEERVICEFIVGKRDEAKKI 341
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV------LSDIIHWKKPL 362
+ + + ++ +++ +C +++ L I WK P
Sbjct: 342 TDLQHQTKYFKN-------VCYNAYTRSCTPDSYKRSCELMKYHGFGDALKIIESWKPPK 394
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
FP+TG + I PG + IL Q+W+NS FQ++ +L +++L
Sbjct: 395 FPVTGHMLAHLNIKPGPVMTVILTRLFQKWMNSEFQMTAGELIDAVKEL 443
>gi|302383755|ref|YP_003819578.1| polynucleotide adenylyltransferase region [Brevundimonas
subvibrioides ATCC 15264]
gi|302194383|gb|ADL01955.1| Polynucleotide adenylyltransferase region [Brevundimonas
subvibrioides ATCC 15264]
Length = 402
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 136/420 (32%), Positives = 205/420 (48%), Gaps = 23/420 (5%)
Query: 1 MVS-IVQHKWFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M + + +H W S I ++ L + VGG +R++L+ V DIDIAT + P+
Sbjct: 1 MTTRLERHDWLTSSATIAVMDALEAAGGPDCARFVGGCIRNALVGRPVDDIDIATRLKPE 60
Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
M KV+PT +++GT+ + ++ ++ITTLR D+ TDGR A V FT DW D+
Sbjct: 61 DAMAALKAAGLKVVPTGLAHGTVTAVSERRPYEITTLRRDVETDGRRAVVAFTDDWAEDA 120
Query: 118 LRRDFTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDF +NALYAD+ G + D G+ D + F+GD RI EDYLRILRFFRFFA
Sbjct: 121 ARRDFRLNALYADRTGAIFDPTGQGVEDALAGRVVFVGDPDRRIEEDYLRILRFFRFFAW 180
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
YG D++GL A GL LS+ER+ E+ KLL A +P A+ M G+ + +
Sbjct: 181 YGRAAPDAEGLAACAAHADGLARLSAERVSKELLKLLAAPDPRAAVAAMRTAGVLERLVP 240
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
V E + D +LR L+ D + + A+ LPR + L
Sbjct: 241 TV--------PSARAFEAMVALSDDPVLRLSALLPD-DAVVVTAAAQALRLPRVMEARLG 291
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ + T + ++ L Y G + ++ +L L D VL+ +
Sbjct: 292 AAAASPLDPATP-VATLRALTYRLGRQAVLDRL-------IRGLAEADGQGDRSVLTTVA 343
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
W P P+ G D+ K G+ PG G IL + EW+ + F + L +L+A+ +
Sbjct: 344 DWPVPRMPVGGRDLAKLGVEPGPDTGRILKAFEDEWVAADFPATGH--VERLSRLVAARR 401
>gi|257869568|ref|ZP_05649221.1| poly A polymerase [Enterococcus gallinarum EG2]
gi|257803732|gb|EEV32554.1| poly A polymerase [Enterococcus gallinarum EG2]
Length = 404
Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats.
Identities = 85/403 (21%), Positives = 157/403 (38%), Gaps = 16/403 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I +L + + VGG+VRD+++ + D+DIAT+ P + +F + I
Sbjct: 11 EQAIPVLQRIEAAGFDAYFVGGSVRDTILGQPIHDVDIATSAFPAEIKELFP----RTID 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + ++ITT R++ R KV F R D RRDFTINA
Sbjct: 67 LGIEHGTVLVLWENEQYEITTFRTEEAYQDFRRPDKVAFVRSLAEDLKRRDFTINAFALK 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G++ID GL DL+ + ++ +G H R ED LR++R RF + G ++ A
Sbjct: 127 KDGEIIDLFDGLADLQLKILRAVGQPHERFHEDALRMMRGLRFVSQLGF-TLEPRTFEAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L +S ERI E KLL + +A+ + +++ L
Sbjct: 186 YDNHQLLAKISVERITIEFVKLLLGAHRNSALKA-FVATECYLYCPGLKQAGEALLRMAD 244
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
E+ + + I I + K++ E+ + S F +K +
Sbjct: 245 LPERPLNNEASAWTLLIDQI-GLSTAEVRPFLKQWKCSNELIRMVQSLFEGVLLRK--AG 301
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
P + Y G + ++ D + + G D+
Sbjct: 302 PFSDEALYHLGSEAARLSEELLYYY----GQEVDPSVSQARYQALPIHSLKDLAINGRDL 357
Query: 371 VKYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ + G + +L ++ I ++ L + ++
Sbjct: 358 LSHFDQSGGPWMKEVLAAAEKAVIEKRVANEEKALLAFAKTIV 400
>gi|293402195|ref|ZP_06646333.1| polyA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304302|gb|EFE45553.1| polyA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 452
Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats.
Identities = 102/442 (23%), Positives = 175/442 (39%), Gaps = 48/442 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I I+++L + ++ VGG VRD LM D DI T LP M+IF+ Y+VIP
Sbjct: 7 PSMIKIVTILKEAGYEAYFVGGCVRDMLMQRKTHDYDITTNALPQETMQIFAAKGYQVIP 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINALYAD 130
T I +GTI ++ K+ +ITT R + ++FT+D K D RRDFT+NA+ D
Sbjct: 67 TGIKHGTITVLVNKEPVEITTYRIEQTYHDHRHPSTIIFTKDLKEDLKRRDFTMNAIAYD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ D G D+ + I+ +GDA R ED LR+LR RF +D A
Sbjct: 127 PTYGLYDPFHGAQDIAQKRIRCVGDATTRFQEDALRMLRALRFSCVLDF-TLDEACGKAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L+ +S ERI E N+LL + N + +Y+ + EI + +
Sbjct: 186 QQNHNLLRYVSKERIREEFNRLLMGEKA-NTLQLLYDFHVLDEILPGYSALYGHEQKTPW 244
Query: 251 EAEQVFEWKIDSLLR------------------FIVLISWQDKKSILSMAKKFSLPREIR 292
VF+ +L S+ D + +
Sbjct: 245 HIYDVFQHTDIALNHTKGYPLESKLAIIFHDWGKPACESFDDNGIAHYKKHAYVSEQIAY 304
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK---------------LKIFLALHY 337
+ + N +T+ + +Y++ + + + L I LA
Sbjct: 305 EQMKALKYDNKTIETVCLFIRYHDYYVHEKRSTLRRFVAHFHNDFTLAKQALDIQLADDM 364
Query: 338 NNLTHQDTCFI------LQVLSDIIHWKK----PLFPLTGDDVVKYGIPPGKKVGNILVH 387
+ I ++LS + K + G D+++ G GK +G++L
Sbjct: 365 AKNRTKSDEKIVIIKNCQRLLSIMEKEKDMLSMKDLAINGHDLIQLGFQ-GKAIGDVLKA 423
Query: 388 CKQEWINSSFQLSQEDLHHLLR 409
+ + + ++ L ++
Sbjct: 424 VYEWVLEDPSRNEKDILERYIK 445
>gi|114585223|ref|XP_001140831.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial isoform
2 [Pan troglodytes]
Length = 414
Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats.
Identities = 105/402 (26%), Positives = 183/402 (45%), Gaps = 29/402 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QDID A+T P ++ +F +
Sbjct: 40 LFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFASTATPTQMKEMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D
Sbjct: 160 LGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRI--VDKPGDHDP 217
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+++A + I + K + SL++ +
Sbjct: 218 ETLEAIAENAKGLAGISGERIWV-----------------ELKKILVGLPANASLEEFDK 260
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
V + F K +LL + + + + + + +E + + + +
Sbjct: 261 VSKNVDGFSPKPMTLLASLFKVQDD----VTKLDLRLKIAKEEKNLGLFIVKN--RKDLI 314
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ Y D ++ ++ L +Q + L ++ W P FP++G
Sbjct: 315 KATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCL---LKEMQQWSIPPFPVSGH 371
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 372 DIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 413
>gi|87199043|ref|YP_496300.1| polynucleotide adenylyltransferase region [Novosphingobium
aromaticivorans DSM 12444]
gi|87134724|gb|ABD25466.1| Polynucleotide adenylyltransferase region [Novosphingobium
aromaticivorans DSM 12444]
Length = 400
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 126/402 (31%), Positives = 190/402 (47%), Gaps = 25/402 (6%)
Query: 1 MV-SIVQHKWFHDSDLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58
M + + W DL +++ L+ + VGG VRD+++ L +DID+ATT+ PD
Sbjct: 1 MTDRLPKADWTARDDLAALVAALDPDSQGNCRWVGGVVRDTILGLPAKDIDMATTLPPDE 60
Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
S K +PT I++GT+ + +ITTLR D+ TDGR+A V F+ DW+ D+
Sbjct: 61 TAARLSTAGIKSVPTGIAHGTVTAVLPGGPVEITTLRRDVSTDGRHATVSFSTDWRDDAA 120
Query: 119 RRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTINALYAD + +V DY GGL DL R ++FIGDA RI EDYLRILR+FRF A +
Sbjct: 121 RRDFTINALYADPRTLEVFDYHGGLADLAARRVRFIGDARQRIREDYLRILRYFRFQARF 180
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G D++ A + GLK LS ER+ E+ LL +P + M G+ ++ +
Sbjct: 181 GSIPADTEAESAVSELAAGLKGLSRERVGWELMNLLGLPDPAPTMRRMAELGVLAQVLPE 240
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
LD L +I EQ ++ R L+ + R
Sbjct: 241 TAADGLDALEALIGNEQSARADAVAIRRLAALLP------ADRHLAELVAARLRLSAAQR 294
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
+ + + + L Y G + +L I + ++ +
Sbjct: 295 KRLATVAAPSGADGDARALAYRIGIEEARDRLLIAG----------------RPVAALDG 338
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399
W+ P PL G ++V G+ G +V L + +WI+ F
Sbjct: 339 WQAPALPLKGGEIVARGVTAGPEVARTLRAVEDQWISEGFPD 380
>gi|194467926|ref|ZP_03073912.1| Polynucleotide adenylyltransferase region [Lactobacillus reuteri
100-23]
gi|194452779|gb|EDX41677.1| Polynucleotide adenylyltransferase region [Lactobacillus reuteri
100-23]
Length = 403
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 97/406 (23%), Positives = 174/406 (42%), Gaps = 18/406 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + + ++ VGG VRD++++ + DIDIAT+ P + IF+ +
Sbjct: 11 EPARPILQKIEEAGYEAYFVGGCVRDTILHDEIHDIDIATSAYPSEIKAIFNH----TVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ I+ ++ TT R++ R KV F R D RRDFTINAL
Sbjct: 67 TGIEHGTVMILDHGTGYETTTFRTESGYQDYRRPDKVTFVRSLSEDLQRRDFTINALALR 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G+VID GL DL+ IK +G+ + R ED LR++R RF + ID+ L
Sbjct: 127 EDGEVIDLFDGLEDLQKHLIKAVGNPNERFHEDALRMMRAVRFASKLDFV-IDTATLKGI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQLSQV 249
+ L+ ++ ERI E+ KLL +NP+ + G+++ L+ + +L L +
Sbjct: 186 KENAPLLEKIAVERIRVELEKLLLGQNPVAGLKDFIATGLYQYCPGLENAQAALSALLIL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ E ++ S+L + + D+K I KK+ ++ + + +
Sbjct: 246 NQWHLENEAQLWSVLGLQLQL---DQKEIGKFLKKWKTANDLIAQVKKVVPAVQAIRQRA 302
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ L + G+ + ++ + D + + + + G
Sbjct: 303 LTPT--LMFNTGETALHDANQVAKLYGWA----IDDEELQKAYQKLPIKNAKELAIDGRV 356
Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++ K G+ PG +G IL +N L + ++
Sbjct: 357 LITKAGVKPGPLMGKILQQLTLAVVNGEIANDATVLLEKVEEITKE 402
>gi|331083670|ref|ZP_08332781.1| hypothetical protein HMPREF0992_01705 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330403881|gb|EGG83433.1| hypothetical protein HMPREF0992_01705 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 415
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 85/414 (20%), Positives = 162/414 (39%), Gaps = 22/414 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+ L + + VGG VRDSL+ S D DI T+ P V IF + +
Sbjct: 7 KKVQTIIRTLQEHGYDAYAVGGCVRDSLLFRSPADWDITTSAKPLEVKEIFK----RTVD 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++ K+ F++TT R D + R+ K +FT + + D RRDFTINA+ +
Sbjct: 63 TGLQHGTVTVLIEKEGFEVTTYRIDGEYEDSRHPKEVIFTGNLEEDLKRRDFTINAMAYN 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++D GG DL+++ ++ +G+ R ED LRILR RF A G + A
Sbjct: 123 DAVGLVDVFGGRQDLQDKIVRCVGNPQERFTEDALRILRAVRFSAQLGFSIEEKTKEAAK 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-----EISLDQ 245
+ A I + + L+ + + + GI K + + +
Sbjct: 183 VLAPTLKNISAERIQTELLKLLVSKNP--HYLKTAWELGITKIVLPEFDVLMETSMGEKT 240
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
L ++ L + + + ++ ++ + + +
Sbjct: 241 LKAFAYTSADKAERLAVLFANMEKTPEKSRDLAKNILRRLRFDNDTINKVSELVFWHTCP 300
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT---------CFILQVLSDII 356
+ ++ + + L + A F +++
Sbjct: 301 WECTKKAVRIVLSQCTPALFPVLLNVHRAELLAEEKPDKENLEFLEKSGEFYREIMEKKE 360
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ ++G D ++ GI PGKK+G +L C + + + ++E L + K
Sbjct: 361 CISIKMLAVSGKDFIEMGIEPGKKIGELLSSCLALVLENPEKNTREYLLSYITK 414
>gi|332186789|ref|ZP_08388531.1| poly A polymerase head domain protein [Sphingomonas sp. S17]
gi|332013122|gb|EGI55185.1| poly A polymerase head domain protein [Sphingomonas sp. S17]
Length = 383
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 124/415 (29%), Positives = 198/415 (47%), Gaps = 33/415 (7%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
++ W DLI + + L ++ VGGAVRDSL+ +V DID+AT + P+ V+
Sbjct: 1 MNPATAPWADRRDLIALAATL-----EARFVGGAVRDSLLGHAVADIDLATPLSPETVIA 55
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ +K +PT I++GTI + ++TTLR D+ TDGR+A V FT DW+ D+ RRD
Sbjct: 56 RVRDSGFKPVPTGIAHGTITAVLPDGPVEVTTLRRDVSTDGRHAVVAFTDDWREDAARRD 115
Query: 122 FTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALYAD + + DY GGL+DL+ ++FIGD RI ED+LRILRFFRF A +G+
Sbjct: 116 FTMNALYADPETGALFDYFGGLDDLKAGRVRFIGDPLQRIAEDHLRILRFFRFHARFGQA 175
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
++ + +A + + + KLL A + I M GI + + ++
Sbjct: 176 IDEAGLAACTARANDLMALSRERIAAE-LLKLLVAPGAVPVIALMVERGILRAVLPEIDA 234
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
++L+ + E EQ D + R L+ ++ ++ + L R LI+
Sbjct: 235 AGAERLAMLAEREQAAGIAADPIRRLAALLP---PQTAEAVGARLKLSNVDRKRLIAATA 291
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ ++ Y G + I +L + + + I W
Sbjct: 292 GPGEEGPRAL------AYRVGIEGAIDRLLLAG----------------ETVEAIRDWTP 329
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
P PLTG +V GI G +V +L + WI F + + L +A +
Sbjct: 330 PSLPLTGGALVARGIGKGPEVARLLRQVETRWIAEGFP-GEARVAELADAAVAQA 383
>gi|302672263|ref|YP_003832223.1| tRNA nucleotidyltransferase Cca [Butyrivibrio proteoclasticus B316]
gi|302396736|gb|ADL35641.1| tRNA nucleotidyltransferase Cca [Butyrivibrio proteoclasticus B316]
Length = 447
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 99/436 (22%), Positives = 183/436 (41%), Gaps = 48/436 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL +++ ++ +VGG VRD+++ D DI T LP + ++F + I
Sbjct: 7 DNAKTILDTIHEAGFEAYVVGGCVRDAVLGRVPGDWDITTNALPQDIKKLFR----RTID 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYA-KVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ K+ +++TT R D + R+ +V FT++ D RRDFTINA+ +
Sbjct: 63 TGIEHGTVTVMMGKEGYEVTTYRIDGKYEDNRHPSEVTFTKNLTEDMKRRDFTINAMAYN 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++ +ID GGL D+ I+ +GD + R ED LRI+R RF A G I+ A
Sbjct: 123 EEEGLIDRFGGLEDIEKGLIRCVGDPYERFSEDALRIMRAIRFSAQLGY-TIEDKTCEAI 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L+ +S+ERI E+ KLL + +P I Y GI + I + + + +
Sbjct: 182 KELSGTLEKISAERIQVELVKLLLSDHPDK-IRQAYELGITRVILPEFDACMETEQNNIH 240
Query: 251 EAEQVFEWKIDSLLRFIVL------------------------------ISWQDKKSILS 280
A V E I +LL + + +
Sbjct: 241 HAYSVGEHIIQTLLNIRADRVLRLTMLMHDMAKPVTMTVDEEGVSHFKGHDIKGVEMARN 300
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ ++ R+ + + + + +++ G L++ A
Sbjct: 301 IFRRLKFDRDTMDKACNLIRYHDYRFPATARNVRRAMNKVGADAFPLFLEVRYADTMAQS 360
Query: 341 THQDTCFILQ------VLSDIIHWKKPL----FPLTGDDVVKYGIPPGKKVGNILVHCKQ 390
++ + Q + +I + + + G D++ G+ PGKK+G +L
Sbjct: 361 EYKREEKLRQIEETRLLYEEIKAKNECVTLGSLAVNGRDLISLGVAPGKKIGEVLEKMLM 420
Query: 391 EWINSSFQLSQEDLHH 406
+ I+ ++E L
Sbjct: 421 DVIDDPEHNTREYLLE 436
>gi|260587369|ref|ZP_05853282.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Blautia hansenii DSM 20583]
gi|260542236|gb|EEX22805.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Blautia hansenii DSM 20583]
Length = 415
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 85/414 (20%), Positives = 161/414 (38%), Gaps = 22/414 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+ L + + VGG VRDSL+ S D DI T+ P V IF + +
Sbjct: 7 KKVQTIIRTLQEHGYDAYAVGGCVRDSLLFRSPADWDITTSAKPLEVKEIFK----RTVD 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++ K+ F++TT R D + R+ K +FT + + D RRDFTINA+ +
Sbjct: 63 TGLQHGTVTVLIEKEGFEVTTYRIDGEYEDSRHPKEVIFTGNLEEDLKRRDFTINAMAYN 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++D GG DL+++ ++ +G+ R ED LRILR RF A G + A
Sbjct: 123 DAVGLVDVFGGRQDLQDKIVRCVGNPQERFTEDALRILRAVRFSAQLGFSIEEKTKEAAK 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-----EISLDQ 245
+ A I + + L+ + + + GI K + + +
Sbjct: 183 VLAPTLKNISAERIQTELLKLLVSKNP--HYLKTAWELGITKIVLPEFDVLMETSMGEKT 240
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
L ++ L + + + + ++ + + +
Sbjct: 241 LKAFAYTSADKAERLAVLFANMEKTPEKSRDLAKKILRRLRFDNDTINKVSELVFWHTCP 300
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT---------CFILQVLSDII 356
+ ++ + + L + A F +++
Sbjct: 301 WECTKKAVRIVLSQCTPALFPVLLNVHRAELLAEEKPDKENLEFLEKSGEFYREIMEKKE 360
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ ++G D ++ GI PGKK+G +L C + + + ++E L + K
Sbjct: 361 CISIKMLAVSGKDFIEMGIEPGKKIGELLSSCLALVLENPEKNTREYLLSYITK 414
>gi|313905494|ref|ZP_07838858.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Eubacterium cellulosolvens 6]
gi|313469678|gb|EFR65016.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Eubacterium cellulosolvens 6]
Length = 461
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 86/441 (19%), Positives = 166/441 (37%), Gaps = 48/441 (10%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+L L+ ++ VGG VRDS++ QD DI T+ P++V IF + I T I +
Sbjct: 14 VLDSLHAAGYEAYAVGGCVRDSILGRKPQDWDITTSARPEQVKEIFD----RTIDTGIQH 69
Query: 78 GTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQGKV 135
GT+ ++ R ++TT R D R+ + FT D RRDFTINA+ + + +
Sbjct: 70 GTVTVMIRGNQHEVTTYRMDGEYTDCRHPEEVTFTSSLAEDLKRRDFTINAMAYNDREGL 129
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
+D GG+ DL+ I+ +GD R ED LRI+R RF A + A
Sbjct: 130 VDLYGGVEDLQRHVIRCVGDPMERFGEDALRIMRAVRFSAQLDFGIDEKTLEAVRTLAPN 189
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
KI + ++ + Y GI K I + + + + V
Sbjct: 190 LSKISAERICMELTKLIVSDHP--EYLRLAYETGITKIILPEFDAMMETEQNNPHHMYNV 247
Query: 256 FEW--------KIDSLLRFIVLISWQ----------------------DKKSILSMAKKF 285
+ K D +LR +L+ + + ++
Sbjct: 248 GDHTLAAMKAVKADRILRLALLLHDIAKPVCKTTDEEGVDHFCGHGNAGAEMAGRIMRRL 307
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345
+ + + + + + S ++++ G+++ + + A Q
Sbjct: 308 KMDNDTIRRVKTLVTYHDWRPEPSDKLVRRMINKVGEELFPLLICMQEADTRAQSEWQRD 367
Query: 346 CFILQ----------VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
+ + + ++ + G D+++ G+ G ++G +L +E +
Sbjct: 368 EKLRKIAQIKSIGERIFAEGQCVNLKSLAIGGGDLLQMGVEKGPEIGRLLHLALEEVLEE 427
Query: 396 SFQLSQEDLHHLLRKLIASSQ 416
+ L ++K + S +
Sbjct: 428 PAHNEKAYLTAFVQKELGSKE 448
>gi|307166915|gb|EFN60819.1| tRNA-nucleotidyltransferase 1, mitochondrial [Camponotus
floridanus]
Length = 478
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 117/411 (28%), Positives = 196/411 (47%), Gaps = 16/411 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+L + +L K + I GGAVRD LM+ +D+D AT P ++ +F+K ++
Sbjct: 66 FTPELQTLANLFKKYNYELRIAGGAVRDILMSKQPKDLDFATDATPQQMKEMFTKEEIRM 125
Query: 71 I-PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
I +GTI K+ F+ITTLR D++T+GR+A+V FT+DWK D+ RRD TIN+++
Sbjct: 126 INEKGEKHGTITARINDKENFEITTLRIDVLTNGRHAQVEFTKDWKLDANRRDLTINSMF 185
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDG 186
D G + DY G +DL+ + + F+GDA RI EDYLRILR+FRF+ D
Sbjct: 186 LDLDGTLYDYFYGYDDLQRKRVVFVGDADTRIREDYLRILRYFRFYGRIMDSPDKHDEAT 245
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA-IVHMYNGGIFKEIFLDVQEISLDQ 245
+ A + GL +S ERIWSE NK+L L + + G + E ++
Sbjct: 246 IKALKENIDGLSQISGERIWSEWNKILMGNFALELTLKLLECGASKHIGLPE--EPVVEN 303
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
V + + + + ++ +D+ + K S F +
Sbjct: 304 FRIVYQRALSNNVTLKPISLIVSMLRNEDEVMTVHNRLKLSNSDRDLAFFLMQHREYIPC 363
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ P + + + I + + L Y +++L ++ WK P FP+
Sbjct: 364 EKPLKPYQQLILIQSTGRYEIYREYVKEVLRYRGA--------MELLDEVEQWKIPKFPI 415
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G+ ++K + K +G +L KQ WI+ F+L+ E L + +++ +
Sbjct: 416 NGN-MMKEHVSNPKIIGLVLKKLKQIWIDEDFKLTSEHLLEHIPSILSELE 465
>gi|189220183|ref|YP_001940823.1| tRNA nucleotidyltransferase/poly(A) polymerase [Methylacidiphilum
infernorum V4]
gi|189187041|gb|ACD84226.1| tRNA nucleotidyltransferase/poly(A) polymerase [Methylacidiphilum
infernorum V4]
Length = 443
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 103/437 (23%), Positives = 177/437 (40%), Gaps = 42/437 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I I+ +L K + GG VRD L+ DIDIAT+ PD+V +F + +I
Sbjct: 3 EEAIRIVRILQKAGFTAFFAGGCVRDILLKKEPHDIDIATSATPDQVQNLFKEKASGLI- 61
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQ 131
S+G I++ +F++ T R+D+ + G R+ K V K D+LRRDFTIN ++ D
Sbjct: 62 -GKSFGVIRVKSGAHFFEVATFRTDIGSQGGRWPKAVQFSTPKEDALRRDFTINGIFYDP 120
Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G +IDYVGG D+ + I+ IGD R ED+LR+LR RF G +I+ A
Sbjct: 121 LTGTIIDYVGGSEDIEKKRIRAIGDPKIRFEEDHLRLLRAIRFAVRLGF-SIEEKTWEAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ + +S ERI E++K+ +P + + G+ + I ++ + + +
Sbjct: 180 QSSAHKITQISPERIREELDKIFTGPDPAKGLELLDQSGLLRFILPEISNLHGVEQPKEF 239
Query: 251 EAE----------QVFEWKIDSLLRFIVLISWQDK----------------------KSI 278
E L L K +
Sbjct: 240 HPEGDVFNHVLLLLSHLHNPSLELALAALFHDVGKAVTFSRDNTGQIHFYGHETVGAQIT 299
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
+ + ++I ++ + + K + + L L +L++ +
Sbjct: 300 EKIMTRLRYSKDIIKKVVECVRNHMSFKDVPRMKKSTLKKLILKPTFPIELELHRIDCLS 359
Query: 339 NLTHQDTCFILQVLSD---IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
+ + L + + P +TG D++ G+ PGKKVG IL ++ +
Sbjct: 360 SHGNLSIYNFLNKIKEQYSAESLSPPKL-ITGFDLLALGLKPGKKVGEILELIREAQLED 418
Query: 396 SFQLSQEDLHHLLRKLI 412
E L + LI
Sbjct: 419 KISSRAEALL-MAEDLI 434
>gi|148543998|ref|YP_001271368.1| tRNA CCA-pyrophosphorylase [Lactobacillus reuteri DSM 20016]
gi|184153392|ref|YP_001841733.1| tRNA CCA-pyrophosphorylase [Lactobacillus reuteri JCM 1112]
gi|227364911|ref|ZP_03848956.1| tRNA CCA-pyrophosphorylase [Lactobacillus reuteri MM2-3]
gi|325682464|ref|ZP_08161981.1| poly A polymerase [Lactobacillus reuteri MM4-1A]
gi|167006458|sp|A5VJK7|CCA_LACRD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|226702070|sp|B2G721|CCA_LACRJ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|148531032|gb|ABQ83031.1| Polynucleotide adenylyltransferase region [Lactobacillus reuteri
DSM 20016]
gi|183224736|dbj|BAG25253.1| polyA polymerase [Lactobacillus reuteri JCM 1112]
gi|227070058|gb|EEI08436.1| tRNA CCA-pyrophosphorylase [Lactobacillus reuteri MM2-3]
gi|324978303|gb|EGC15253.1| poly A polymerase [Lactobacillus reuteri MM4-1A]
Length = 403
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 96/406 (23%), Positives = 175/406 (43%), Gaps = 18/406 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L + + ++ VGG VRD++++ + DIDIAT+ P + IF+ +
Sbjct: 11 EPARPVLQKIEEAGYEAYFVGGCVRDTILHDEIHDIDIATSAYPSEIKAIFNH----TVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ I+ ++ TT R++ R KV F R D RRDFTINAL
Sbjct: 67 TGIEHGTVMILDHGTGYETTTFRTESGYQDYRRPDKVTFVRSLSEDLQRRDFTINALALR 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G+VID GL DL+ IK +G+ + R ED LR++R RF + ID+ L
Sbjct: 127 EDGEVIDLFDGLEDLQKHLIKAVGNPNERFHEDALRMMRAVRFASKLDFV-IDTATLKGI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQLSQV 249
+ L+ ++ ERI E+ KLL +NP+ + G+++ L+ + +L L +
Sbjct: 186 KENAPLLEKIAVERIRVELEKLLLGQNPVAGLKDFIATGLYQYCPGLENAQAALSALLIL 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ E ++ S+L + + D+K I KK+ ++ + + +
Sbjct: 246 NQWHLENEAQLWSVLGLQLQL---DQKEIGKFLKKWKTANDLIAQVKKVVPAVQAIRQRA 302
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ L + G+ + ++ + D + + + + G
Sbjct: 303 LTPT--LMFNTGETALHDANQVAKLYGWA----IDDEELQKAYQKLPIKNAKELAIDGRV 356
Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++ K G+ PG +G IL +N + L + ++
Sbjct: 357 LITKAGVKPGPLMGKILQQLTLAVVNGEIANNATVLLEKVEEITKE 402
>gi|310657862|ref|YP_003935583.1| poly a polymerase family protein [Clostridium sticklandii DSM 519]
gi|308824640|emb|CBH20678.1| Poly A polymerase family protein [Clostridium sticklandii]
Length = 444
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 103/436 (23%), Positives = 183/436 (41%), Gaps = 41/436 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + I++++ + ++ IVGG++RDSL+ + +DIDIA++ P + RIF YK I
Sbjct: 8 KEALEIINIIEESGYEAYIVGGSLRDSLLGMQPKDIDIASSASPTEIKRIF--NSYKTID 65
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYAD 130
T I +GT+ +I K +ITT RS+ + + + D RRDFTINA+ +
Sbjct: 66 TGIDFGTVTLIYNDKPVEITTFRSESVYLDSRRPDSVSFEKNVDEDLKRRDFTINAMAYN 125
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
Q K++D G DL N+ I+ +G R ED LR+LR RF +I+ A
Sbjct: 126 QSKKLVDLFSGEEDLNNKLIRCVGSPDERFSEDALRMLRAVRFACVLNF-DIEKKTFEAI 184
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
++ +S ERI +E+NK+L + P I + + + I ++ +S
Sbjct: 185 KHNASRIEYISKERIQAELNKILMSSKPSRGIRLLLDSKLLDYILPEISRLSGFNQHNPF 244
Query: 251 EAEQVFEWKIDSL--------LRFIVLISWQDKKS----------------------ILS 280
++ E + + LR L K S
Sbjct: 245 HHLELLEHTLCVMDKVEPRLQLRLAALFHDAGKVDTITLDENGIGHFYGHDSVSEEIAKS 304
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKT-LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ K+ EI + Q + I+KL ++G+ + + A
Sbjct: 305 VLKRLRYSNEIIELTSQLVRYHMIQANVIGKKGIQKLLRIFGENNIFELADLHFADSSCT 364
Query: 340 LTHQDT----CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
+ + I QVL + I + + G D++K G GK++G+IL +
Sbjct: 365 IIEVNEDAFRLKIRQVLDENIPFSVKDLDIDGYDLMKIGAK-GKQIGDILNELLELVSED 423
Query: 396 SFQLSQEDLHHLLRKL 411
+ + ++ L +++
Sbjct: 424 ASKNNKNQLMLYAKEI 439
>gi|251777768|ref|ZP_04820688.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243082083|gb|EES47973.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 432
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 97/427 (22%), Positives = 188/427 (44%), Gaps = 38/427 (8%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
D+ IL L ++ IVGG VRDS++N +D DI T P+ V+++F+ KVI T
Sbjct: 10 DVRFILETLKNNGHEAYIVGGCVRDSILNNIPKDWDITTKARPEEVVKLFN----KVILT 65
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQ 131
+ +GT+ ++ + +++TT R D + R+ K F + K D RRDFTINA+ ++
Sbjct: 66 GVKHGTVTVLINSEGYEVTTYRMDGKYEDSRHPKQVKFVSNLKEDLARRDFTINAMAYNK 125
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ +IDY G++DL+ + IK +G++ R ED LR+LR RF + +I ++ L +
Sbjct: 126 EDGLIDYFEGVSDLKKKVIKTVGNSEKRFSEDALRMLRAIRFSSQLDF-SISNETLNSIK 184
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ +K +S ERI E NK+L + I + G+ + IF ++ + + +
Sbjct: 185 NLRYNIKNISKERIREEFNKILFSS--TKGIDILIETGLIEHIFPEIIKFCDFKADNMYY 242
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKK------------------SILSMAKKFSLPREIRY 293
+ ++ + ++ + + + K+F
Sbjct: 243 NDNLYAHTVRAIEEIESSLHLKLTMLFYNLIKINNEDIEYTILQVKEFLKEFKYDNNTVN 302
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF------ 347
+ + N + EIK++ L + LK+ A +
Sbjct: 303 KVTTLILY-MNNDLNTKLEIKQILNLINLDLFEDLLKVKEAEILSQNPLYKEERLSHLLS 361
Query: 348 ----ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED 403
+ ++L + + + G D++ G+ GK +G +L + +N+ +E
Sbjct: 362 IRENLKEILLNKECFNLKDLSINGKDLINLGLEKGKNIGEMLNELLELVMNNPDLNDKEI 421
Query: 404 LHHLLRK 410
L ++++
Sbjct: 422 LIDIVKE 428
>gi|56420716|ref|YP_148034.1| tRNA CCA-pyrophosphorylase [Geobacillus kaustophilus HTA426]
gi|73619775|sp|Q5KXX0|CCA_GEOKA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|56380558|dbj|BAD76466.1| tRNA nucleotidyltransferase [Geobacillus kaustophilus HTA426]
Length = 404
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 94/401 (23%), Positives = 172/401 (42%), Gaps = 14/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+ L + ++ VGGAVRD L+ ++ D+DIAT+ LP+ VMR+F K I
Sbjct: 6 EQALGIIRQLKRHGYEAYFVGGAVRDLLIGRAIGDVDIATSALPEEVMRLFP----KTID 61
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GT+ ++ +++TT R D R V F R + D RRDFT+NA+ D
Sbjct: 62 VGSKHGTVVVVHEGTAYEVTTFRTDGDYEDHRRPESVTFVRSLEEDLKRRDFTMNAIAMD 121
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++G +ID GG + R I +G A R ED LR++R RF + G + D A
Sbjct: 122 ERGTIIDPFGGQEAIERRLICTVGAADERFREDALRMMRAVRFVSQLGF-ALSEDTKSAI 180
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
++ + +S ER+ E+ KLL A+ + + G+F + ++ L + +
Sbjct: 181 VQNAPLMAHISVERMTMEMEKLLAGPFVAEALPLLADTGLFAYLPGLAAKVQLLRSAAAF 240
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + + L D K I + + LP ++ + +
Sbjct: 241 RWPWLTKREERWALLCRA----LDVKDIRPFLRAWKLPNKVIDEAGAILA-ALDDVPRPE 295
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ + G + ++ + AL + + + + + K + G DV
Sbjct: 296 EWTNEQLFSAGLERALSVEAVRAALCGAP-SEPHHEELRRRFAALPIKTKGELAVNGKDV 354
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+++ G P G V L + ++S + +E ++ L +
Sbjct: 355 IRWAGKPAGPWVKETLDAIWRAVVSSEVENEKERIYAWLME 395
>gi|328946152|gb|EGG40297.1| polyA polymerase family protein [Streptococcus sanguinis SK1087]
Length = 399
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 102/400 (25%), Positives = 179/400 (44%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFE----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL+DL NR ++ +G A R ED LRI+R FRF A +++ D A
Sbjct: 128 NGQVIDLFQGLDDLENRILRAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFAAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A N + + G FL + S +L ++ +
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRNGLEALLTSGA--IEFLPDLKGSRAKLERLFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + + L+ D +++ KK+ RE + + +
Sbjct: 245 LASDFCFSASE-QAWAALLLALDVQNVKGFLKKWKTSREFANKVEDLVEIAAIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLLQAEELRQAQGLPVDFSAIQNLDASLTIHNKQEMVVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++G PG K+G IL + ++ E ++ + +
Sbjct: 358 QEFGFEPGPKLGQILKELEYAIVDGHLPNDLETIYAYIEE 397
>gi|148235405|ref|NP_001082356.1| ATP(CTP):tRNA nucleotidyltransferase precursor [Xenopus laevis]
gi|24753797|gb|AAN64029.1|AF466151_1 ATP(CTP):tRNA nucleotidyltransferase precursor [Xenopus laevis]
Length = 428
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 114/408 (27%), Positives = 190/408 (46%), Gaps = 26/408 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L + +L K + I GGAVRD L D+D ATT P+++ +F K +
Sbjct: 35 LFTDGLKTLANLFAKDRYELRIAGGAVRDLLSGKQPHDVDFATTATPEQMKDMFLKDGVR 94
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I ++GT+ F+ITTLR D G + D+ RRD TIN+++
Sbjct: 95 LINNKGETHGTVTARDNVSEFEITTLRVDCTQMG-DMLSGIHDRLEIDAERRDLTINSMF 153
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDG 186
G + DY G DL+NR ++F+GD RI EDYLRILR+FRF+ E++ S
Sbjct: 154 LGFDGTLYDYFNGYEDLKNRCVRFVGDPSQRIQEDYLRILRYFRFYGRISERSGAHTSGT 213
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + GL+ +S ERIW E+ K+LE + + I +Y+ G+ + L ++ +L++
Sbjct: 214 LDAVRENASGLRGISGERIWVELKKILEGNHVNHLIQIIYDLGVAPHVGLP-EDGNLEEF 272
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++V E + K +LL + + + + + + +E + +
Sbjct: 273 ARVCERSRRMSPKPMTLLTALFSNTD----HVQKLDLRLKISKEEKNLALFLLQQRRELT 328
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV------LSDIIHWKK 360
D + K ++ TH+ C +L+ ++ W
Sbjct: 329 AERT-----------DAAPLKPFKDYVVDSREPDTHRKICELLKYQGEEQFFREMEGWTL 377
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
P FP++G D+ + GI GK++G IL K+ W S FQ S+E+L + +
Sbjct: 378 PRFPVSGHDLRRMGISSGKEIGRILQELKEHWKGSGFQTSKEELLNRV 425
>gi|114769866|ref|ZP_01447476.1| Poly A polymerase family protein [alpha proteobacterium HTCC2255]
gi|114549571|gb|EAU52453.1| Poly A polymerase family protein [alpha proteobacterium HTCC2255]
Length = 383
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 124/409 (30%), Positives = 207/409 (50%), Gaps = 29/409 (7%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ ++W D I ++ L ++ VGG VR+SL+ L + DIDI+T PD ++ +
Sbjct: 2 KINNRWLKSKDTIKVMDALKCRNNQVLFVGGCVRNSLLGLPITDIDISTNARPDEIINLA 61
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
K K IPT I++GTI II K F++T+ R D+ TDGR+A V ++ + D+ RRDFT
Sbjct: 62 KKAGLKSIPTGINHGTITIISNNKAFEVTSFRKDIKTDGRHATVAYSDKIEDDAERRDFT 121
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-- 181
INA+Y G +ID + G+ DL+ R ++FI D + RI+EDYLRILRFFRF A YG+ +
Sbjct: 122 INAIYMTTDGIIIDPLNGMKDLKKRHVRFIKDPNKRIIEDYLRILRFFRFTAEYGDPDLG 181
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
ID++GL A G+ +L+ ER+ SEI K+L+ +NP + + M GI I
Sbjct: 182 IDAEGLSACAANIDGIALLAKERVGSEIRKILKTQNPSSVLAAMEISGILSNILPGTACK 241
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
++ L + + + ++++ D + L ++ +E + + +
Sbjct: 242 NMPTLIHLE------NKNTINWITRLIVLGGADPTNSLRLSN-----KENKEYKSTLKAI 290
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
N +K +I + +G+ + + AL + + + I
Sbjct: 291 NMGEKPSAIS------FKFGEIIAYSYSLAIAALTETSPPN-------DLSDQIAKGSSV 337
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
FP+ D+ GK++G++L K WI S F L+ +DL + +
Sbjct: 338 KFPIKPQDLHNL---EGKQLGDMLKKLKSIWIKSDFTLTNKDLMKKIDQ 383
>gi|319938896|ref|ZP_08013260.1| CCA-adding enzyme [Streptococcus anginosus 1_2_62CV]
gi|319811946|gb|EFW08212.1| CCA-adding enzyme [Streptococcus anginosus 1_2_62CV]
Length = 399
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 100/400 (25%), Positives = 174/400 (43%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+N + D+DIA++ P+ RIF + I
Sbjct: 12 EALPVLKKIKNAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKRIFE----RTIDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ +++TT R++ + R + V F R K D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLEDNHEYEVTTFRTEDIYVDYRRPSHVTFVRSLKEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
VID GL DL N+ ++ +G R ED LRI+R FRF A G ++D+D A
Sbjct: 128 ARNVIDLFEGLADLENQILRAVGIPSERFNEDALRIMRGFRFQAALGF-DLDTDTFQAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ER + E +KLL A + + G L S QL + +
Sbjct: 187 LCAPLLEKISVERTFIEFDKLLTASYWRKGLKSLLASGATDY--LPDMRSSQSQLKTMFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ F++ S + L+ K++ K + E + + ++ +
Sbjct: 245 IKADFQFT-SSEQAWAALLMALQVKNVKKFLKHWKTSNEFQKRVEQIVTIYNIRQRHFLD 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + Y + +MI +I A D I + K + G ++
Sbjct: 304 K--EECYRFELDLMIQAEEIRQAQGLA----VDFEKIHSTYDSLTIHDKHEIVVNGGLLI 357
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
K +G P +G +L + +N + E + + +
Sbjct: 358 KEFGFKPSPALGQLLTEIETAIVNGTLDNRLEAILAFVEE 397
>gi|241896306|ref|ZP_04783602.1| tRNA adenylyltransferase [Weissella paramesenteroides ATCC 33313]
gi|241870467|gb|EER74218.1| tRNA adenylyltransferase [Weissella paramesenteroides ATCC 33313]
Length = 405
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 81/406 (19%), Positives = 153/406 (37%), Gaps = 16/406 (3%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + IL + ++ VGG+VRD+L++ + D+DIAT+ P+ + +IF+ + + T
Sbjct: 12 EALPILETIENAGYEAYFVGGSVRDTLLSKPIHDVDIATSAYPEEIKKIFN----RTVDT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ I+ ++ TT R++ R +V F R D RRDFT+NAL +
Sbjct: 68 GIEHGTVMILDHGTGYETTTFRTESTYTDFRRPDEVKFVRSLDEDLKRRDFTVNALALTK 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GG+ D+ + ++ +G R ED LR++R RF A K +
Sbjct: 128 DGEVIDLFGGVQDMSAKVLRAVGRPEERFHEDALRMMRAVRFAAQLDFKIDPDTQKAIAE 187
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
A I + + + +G L + L +++++
Sbjct: 188 NAPLLANIAVERINVEFSKLMQGTSASYGLVEMIKSGLNRFMPGLSSTDQDLAAYAELLQ 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
Q + L L S K + ++
Sbjct: 248 IAQPADDSQAWSLLSFELGLNPQDTSKFLKLWKQPNEMIQTAKSVITLMNKLRLGDVNDW 307
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y D + A + ++ N+ + + K + G ++V
Sbjct: 308 D----LYQTQDAITTALATVKISEISANVDNLSMR-----YQALPIKHKQELAINGGELV 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
K + PG G IL + + + + L H +++ +
Sbjct: 359 KSLHLAPGPLFGKILADLEHRVVTGGLENERAALLHAAAEIVEKEK 404
>gi|125717916|ref|YP_001035049.1| tRNA CCA-pyrophosphorylase [Streptococcus sanguinis SK36]
gi|166233887|sp|A3CMU4|CCA_STRSV RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|125497833|gb|ABN44499.1| TRNA nucleotidyltransferase, putative [Streptococcus sanguinis
SK36]
Length = 399
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 100/400 (25%), Positives = 177/400 (44%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL+DL N+ ++ +G A R ED LRI+R FRF A +++ D A
Sbjct: 128 NGQVIDLFQGLDDLENQILRAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFAAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + G FL + S +L ++ +
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGA--IEFLPDLKGSRAKLERLFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + + L+ D +++ KK+ RE + +
Sbjct: 245 LASDFRFSASE-QAWAALLLALDVQNVKGFLKKWKTSREFAKKAEDLVEIAAIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLLQAEELRQAQGLPVDFSAIQNLDASLTIHNKQEMVVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++G PG K+G IL + ++ E ++ + +
Sbjct: 358 QEFGFEPGPKLGQILKELEHAIVDGCLPNDLEAVYAYIEE 397
>gi|324995700|gb|EGC27612.1| polyA polymerase family protein [Streptococcus sanguinis SK678]
Length = 399
Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 101/400 (25%), Positives = 179/400 (44%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDIYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL+DL NR ++ +G A R ED LRI+R FRF A +++ D VA
Sbjct: 128 NGQVIDLFQGLDDLENRILRAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFVAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + G FL + S +L ++ +
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLDALLTSGA--IEFLPDLKGSRAKLERLFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + + L+ D +++ +K+ RE + + +
Sbjct: 245 LASDFRFSASE-QAWAALLLALDVQNVKGFLRKWKTSREFANKVQDLVEIAAIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLLQAEELRQAQGLPVDFSAIQNLDASLTIHNKQEMVVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++G PG K+G IL + ++ E ++ + +
Sbjct: 358 QEFGFEPGPKLGQILKELEYAIVDGHLPNDLETIYAYIEE 397
>gi|325473481|gb|EGC76676.1| PolyA polymerase [Treponema denticola F0402]
Length = 448
Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 88/440 (20%), Positives = 180/440 (40%), Gaps = 48/440 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ I S+ + +VGGAVRD + +D DIAT P V +F K I
Sbjct: 6 SKKMSEIASVFFNAGFSAYLVGGAVRDWFLGKPCKDYDIATDAEPKEVQALFR----KTI 61
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYA 129
PT I++GT+ I+ + + + TT R + +DGR + + + R + D RRDFT+NA+
Sbjct: 62 PTGIAHGTVTILYKGEKIECTTFRCEADYSDGRRPQSINYVRSIEEDLSRRDFTMNAIAV 121
Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ G ++D G+ ++++TIK +G R ED LR +R RF + G I+ + L
Sbjct: 122 SLKDGSIVDPFEGVKSIKSKTIKNVGSPLDRFGEDGLRPIRAIRFASQLGF-KIEEETLK 180
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A + + K +S ER E K+L +++P+ ++ + + G+ K ++ + +
Sbjct: 181 AIPLSIEVCKKVSIERFRDEFVKMLLSEHPIISLKLLEDTGLLKVFLPELSDCRGVEQKG 240
Query: 249 VIEAEQVFE--------WKIDSLLRFIVLISWQDKKSIL--------------------- 279
+ + + + ++++R L K S
Sbjct: 241 MHSFDVLDHSFLSCDAAPQDNTIVRLAALFHDIGKVSTREKNEYGDYTFYKHESVSEKLT 300
Query: 280 -SMAKKFSLPREIRYFLISFFNCNFNQ--KTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
+ ++ P + + + + + +++ G + + + A
Sbjct: 301 KKIMQRLKFPNKEIEEVSHLVGLHMFHYTEDWTDAAVRRFIVRAGVENIPNLFDLRRADG 360
Query: 337 YN--------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
+ + + +V+++ + G ++++ GIP G K+G IL
Sbjct: 361 FGMTGQAPDLSNLAAFKKRLEKVIAEDSALSLKDLAVGGRELMEIGIPAGPKLGIILQKL 420
Query: 389 KQEWINSSFQLSQEDLHHLL 408
+ + Q ++ L +
Sbjct: 421 FEAVLEDPSQNTKAQLLKIA 440
>gi|289741975|gb|ADD19735.1| tRNA nucleotidyltransferase/poly polymerase A [Glossina morsitans
morsitans]
Length = 474
Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 120/402 (29%), Positives = 205/402 (50%), Gaps = 19/402 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L ++S+ +K + + GGAVRD LM ++ +D+D ATT P+++ +F+ + +
Sbjct: 62 IFTDELKTLVSIFSKYNYELRVAGGAVRDILMEITPKDVDFATTATPEQMKEMFTLEKIR 121
Query: 70 VI-PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I P +GTI + K+ F++TTLR D++TDGR+A+V FT DW+ D+ RRD TIN++
Sbjct: 122 MINPKGEKHGTITVRIGDKENFEVTTLRIDVVTDGRHAEVQFTTDWQLDANRRDLTINSM 181
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSD 185
+ G + DY G DL+ R +KF+GDA+ RI ED+LRILR+FRF+ D
Sbjct: 182 FLGFDGTLYDYFYGYEDLQQRRVKFVGDANTRIKEDFLRILRYFRFYGRIAPEADRHDEL 241
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L A GL +S ERIW E+ K+L ++ M N G+ L ++ ++ +
Sbjct: 242 TLKAIRANAHGLAKISGERIWGELQKMLLGNYSEEIMLEMINSGLVVYCGLPLRP-NVLE 300
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
++ A + FE +L I L+ + + KFS F I+ ++
Sbjct: 301 FKRLCLALKDFEKPHKPILFMISLVHSVEDAIKMHERLKFSAFERDLAFFITQQREKVDE 360
Query: 306 KTLSIPEIKK-LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
+S+ + +K Y + + +L ++ ++ W+ P FP
Sbjct: 361 CYVSLRDYQKLCLQAYIRRDFVEELL-------------KYKHKRELYDNLRSWEVPPFP 407
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
+ G+ + P +K+G +L K W +++FQLS+E+L
Sbjct: 408 VNGNILKDRASIPTRKIGLVLAQLKLIWADNNFQLSREELLE 449
>gi|42526543|ref|NP_971641.1| polyA polymerase family protein [Treponema denticola ATCC 35405]
gi|41816736|gb|AAS11522.1| polyA polymerase family protein [Treponema denticola ATCC 35405]
Length = 448
Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 89/440 (20%), Positives = 179/440 (40%), Gaps = 48/440 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ I S+ + +VGGAVRD + +D DIAT P V +F K I
Sbjct: 6 SKKMSEIASVFFNAGFSAYLVGGAVRDWFLGKPCKDYDIATDAEPKEVQALFR----KTI 61
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYA 129
PT I++GT+ I+ + + + TT R + +DGR + V + R + D RRDFT+NA+
Sbjct: 62 PTGIAHGTVTILYKDEKIECTTFRCEADYSDGRRPQSVNYVRSIEEDLSRRDFTMNAIAV 121
Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ G ++D G+ ++++TIK +G R ED LR +R RF + G I+ + L
Sbjct: 122 SLKDGSIVDPFDGVKSIKSKTIKTVGSPLDRFGEDGLRPIRAIRFASQLGF-KIEEETLK 180
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A + + K +S ER E K+L +++P+ ++ + + G+ K ++ + +
Sbjct: 181 AIPLSIEVCKKVSIERFRDEFVKMLLSEHPIISLKLLEDTGLLKVFLPELSDCRGVEQKG 240
Query: 249 VIEAEQVFE--------WKIDSLLRFIVLISWQDKKSIL--------------------- 279
+ + + + + ++R L K S
Sbjct: 241 MHSFDVLDHSFLSCDAAPQDNPIVRLAALFHDIGKVSTREKNEYGDYTFYKHEAVSEKLT 300
Query: 280 -SMAKKFSLPREIRYFLISFFNCNFNQ--KTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
+ ++ P + + + + + +++ G + + + A
Sbjct: 301 KKIMQRLKFPNKEIEEVSHLVGLHMFHYTEDWTDAAVRRFIVRAGVENIPNLFDLRRADG 360
Query: 337 YN--------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
+ + + +V+++ + G ++++ GIP G K+G IL
Sbjct: 361 FGMTGQAPDLSNLAAFKKRLEKVIAEDSALSLKDLAVGGRELMEIGIPAGPKLGIILQKL 420
Query: 389 KQEWINSSFQLSQEDLHHLL 408
+ + Q ++ L +
Sbjct: 421 FEAVLEDPSQNTKAQLLKIA 440
>gi|315652418|ref|ZP_07905406.1| poly A polymerase [Eubacterium saburreum DSM 3986]
gi|315485317|gb|EFU75711.1| poly A polymerase [Eubacterium saburreum DSM 3986]
Length = 400
Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 103/406 (25%), Positives = 182/406 (44%), Gaps = 18/406 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++ I+ LN+ + VGG VRDSL+N D DI T LP + +IF K
Sbjct: 7 KNVKKIIESLNEHGFEGFAVGGCVRDSLLNKIPTDWDITTNALPADIKKIFK----KTFD 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130
T I++GT+ ++ ++ITT R D TDGR+ V F+++ D RRDFT+NA+
Sbjct: 63 TGIAHGTVTVLMDGVGYEITTYRIDGDYTDGRHPDSVSFSKNLSEDLCRRDFTVNAMAYS 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
Q ++D G DL+ I+ +GDA R ED LR+LR RF + G I+ + A
Sbjct: 123 PQKGIVDLYKGREDLQKGIIRAVGDAGKRFDEDALRMLRAIRFASQLGF-EIEDNTFEAI 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ K L +S ERI+ E+NKLL N I +Y G+ K I + ++
Sbjct: 182 KQKAKLLVNVSKERIFVELNKLLCGDFAQN-IKLIYTSGLCKYIGKEFSKLDKRVY---- 236
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + + + + +++ + + + + + S
Sbjct: 237 --DFYPGKFGNKKYMYWAVFLEDNIEAVKKILSELKSDNATKNNTYLLISELKHSLPESD 294
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYN----NLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+I+ + G+++ +KI + N + + ++L + ++ + +T
Sbjct: 295 EDIRWSLHRLGEELFYDYIKILKSDKRNTDILDRIDELENRCRRILKEHHAYEISMLDIT 354
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
G D+++ GI G K+G +L + ++ I + L L +K I
Sbjct: 355 GRDLIELGISKGPKIGEVLEYLLKKVIENPSLNDNIKLSKLTKKFI 400
>gi|329115963|ref|ZP_08244680.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Streptococcus parauberis NCFD 2020]
gi|326906368|gb|EGE53282.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Streptococcus parauberis NCFD 2020]
Length = 403
Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats.
Identities = 98/400 (24%), Positives = 177/400 (44%), Gaps = 18/400 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + ++ VGG VRD L++ + D+DIAT+ P IF + +
Sbjct: 13 ALPILKKIKDAGFQAYFVGGGVRDILLDRPIHDVDIATSSYPQETKNIFE----RTVDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL D++N+ ++ +G A R ED LRI+R FRF A +I+ + VA
Sbjct: 129 GQIIDAFTGLEDIKNKELRAVGKAEERFEEDALRIMRGFRFSATLDF-SIEKETFVAMCS 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + + N + + S + + A
Sbjct: 188 HAPLLEKISVERSFIEFDKLLIADKWKRGLRLLINAKAHLYLPGLANKESELRNVLLEVA 247
Query: 253 EQ-VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ ++ + I+ + + K L K + ++I +I+ + S
Sbjct: 248 DDFIYSNSPQAWANLILTLQVESPKEFLKSWKTSNDFQKIVTKMINLYQIRL-----SSS 302
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
K Y YG + L + I + ++I K + G ++
Sbjct: 303 YNKSTIYKYGK----DLAYLCENLREAKGLEAEYNLIDEFDKELIIHDKHEICVNGGTLI 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
K +G+ PG ++G++L + + S + D+ + K
Sbjct: 359 KEFGMKPGPQLGSLLKKIEIAIVEGSLANQKADILAFVAK 398
>gi|325689780|gb|EGD31784.1| polyA polymerase family protein [Streptococcus sanguinis SK115]
gi|325696420|gb|EGD38310.1| polyA polymerase family protein [Streptococcus sanguinis SK160]
Length = 399
Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats.
Identities = 100/400 (25%), Positives = 181/400 (45%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ IF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLKRPIHDVDIASSSYPEETKHIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL+DL N+ ++ +G A R ED LRI+R FRF A +++ D VA
Sbjct: 128 NGQVIDLFQGLDDLENQILRAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFVAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + E D++E S +L ++ E
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEAL-LTSGAIEFLPDLKE-SRAKLERLFE 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ F + + L+ D +++ KK+ RE + + +
Sbjct: 245 LDSEFRFSASE-QAWAALLLALDVQNVKGFLKKWKTSREFAKKVEDLVGIADIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L+ L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLQQAEELRQAQGLAVDFSAIKSLDASLTIHNKQEMVVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++ PG K+G IL + ++ E ++ +++
Sbjct: 358 QEFDFEPGPKLGQILKELEYAIVDGRLPNDLEAVYAYIKE 397
>gi|320546952|ref|ZP_08041253.1| polyA polymerase family protein [Streptococcus equinus ATCC 9812]
gi|320448354|gb|EFW89096.1| polyA polymerase family protein [Streptococcus equinus ATCC 9812]
Length = 401
Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats.
Identities = 94/399 (23%), Positives = 175/399 (43%), Gaps = 16/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + + ++ VGG+VRD L++ + D+DIAT+ P+ IF + +
Sbjct: 13 ALPILKKIREAGYEAYFVGGSVRDVLLHRPIHDVDIATSSYPEETKSIFH----RTVDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 69 IEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G +ID GL+DL+ + ++ +G+ R ED LRI+R FRF A +I+ + A
Sbjct: 129 GLIIDKFNGLDDLKAKLLRAVGNPAERFNEDALRIMRGFRFSASLDF-DIEPETFAAMAA 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A I M K L E + D L Q+++
Sbjct: 188 HAPLLEKISVERSFIEFDKLLMAPFWRKGITAMIASDAQKY--LPYLENAHDNLQQLLDD 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
S + L+ + K + + + + + + + + + T + +
Sbjct: 246 LSCDYHFKSSEQAWAALLLALEIKDVRAFLRAWKTSSQFQKDVEKIVSIYRFRMTSELDK 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
++ Y ++ L D I ++ ++ K + G ++K
Sbjct: 306 MEMYSY------GRNLIEQAEDLRLGFGLPVDFDIIDRLDKELTIHDKHEIVVNGGILIK 359
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
PG ++G IL +++ + +E + +RK
Sbjct: 360 EMQYKPGPELGKILKEIEKQIVLGELANDKEAIFEFIRK 398
>gi|327462287|gb|EGF08614.1| polyA polymerase family protein [Streptococcus sanguinis SK1]
Length = 399
Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats.
Identities = 101/400 (25%), Positives = 179/400 (44%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKVAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL+DL N+ ++ +G A R ED LRI+R FRF A +++ D VA
Sbjct: 128 NGQVIDLFQGLDDLENQILRAVGTAAERFNEDALRIMRGFRFQATLDF-DLEQDTFVAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + G FL + S +L ++ +
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGA--IEFLPDLKGSRAKLERLFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + + L+ D +++ KK+ RE + + +
Sbjct: 245 LASDFRFSASE-QAWAALLLALDVQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLLQAEELRQAQGLPVDFSAIQNLDASLTIHNKQEMVVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++G PG K+G IL + ++ E ++ + +
Sbjct: 358 QEFGFEPGPKLGQILKELEHAIVDGCLPNDLEAIYAYIEE 397
>gi|317471034|ref|ZP_07930409.1| poly A polymerase head domain-containing protein [Anaerostipes sp.
3_2_56FAA]
gi|316901475|gb|EFV23414.1| poly A polymerase head domain-containing protein [Anaerostipes sp.
3_2_56FAA]
Length = 449
Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats.
Identities = 97/441 (21%), Positives = 171/441 (38%), Gaps = 51/441 (11%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I++ L + ++ +VGG VRD ++ D DI T+ P +V IFS I T
Sbjct: 10 AKQIINQLEQAGYEAYVVGGPVRDCILGKCPTDWDITTSASPYQVKEIFS----YTIDTG 65
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ ++ K+ F++TT R + R +V FT+ K D LRRDFTINA+ + +
Sbjct: 66 IAHGTVTVMMGKEPFEVTTYRVDGEYRDHRRPEEVCFTKSLKEDLLRRDFTINAMAYNDR 125
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+IDY GG DL+ +TI+ +GDA R ED LRILR RF A G + +
Sbjct: 126 DGLIDYYGGAEDLKKKTIRCVGDARRRFDEDALRILRALRFQAQLGFVIEEETKQAIQKQ 185
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
AK I + LL I+ ++ G+ K + + + +
Sbjct: 186 AKFLKDISAERIQTELTKLLLSDHP--ETILDAFDLGVTKVVLPEFDRMMETPQNNPHHC 243
Query: 253 EQ--------VFEWKIDSLLRFIVLISWQDKKSI---------------------LSMAK 283
+ + D +LR+ +L+ K + K
Sbjct: 244 YNVGVHTVEALKNTEPDHILRWTMLLHDVGKPEARVEGKIKDSFQGHNTIGEEVSRKILK 303
Query: 284 KFSLPREIRYFLISFFNCNFNQ----KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ + + + + +S +++ + LK+ A
Sbjct: 304 RLKFDNQTIKQVTRLVYWHDVRFGSLDEVSKKTVRRWVSRISVPLFEKLLKVQQADISAQ 363
Query: 340 LTHQDTCF----------ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
T ++ + + L G D++ G+ PG+++G +L
Sbjct: 364 STFMQEEKQQILDRTRLLFEEIKEEKDCLQVKDLALDGKDLISLGMKPGREIGEMLAGLL 423
Query: 390 QEWINSSFQLSQEDLHHLLRK 410
+ + + +E L +RK
Sbjct: 424 ELVLEDPAKNKREVLEQAVRK 444
>gi|297529649|ref|YP_003670924.1| polynucleotide adenylyltransferase region [Geobacillus sp. C56-T3]
gi|297252901|gb|ADI26347.1| Polynucleotide adenylyltransferase region [Geobacillus sp. C56-T3]
Length = 404
Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats.
Identities = 94/401 (23%), Positives = 170/401 (42%), Gaps = 14/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+ L + ++ VGGAVRD L+ + D+DIAT+ LP+ VMR+F K I
Sbjct: 6 EQALGIIRQLKRHGYEAYFVGGAVRDLLIGRPIGDVDIATSALPEEVMRLFP----KTID 61
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GT+ ++ +++TT R D R V F R + D RRDFT+NA+ D
Sbjct: 62 VGSKHGTVVVVHEGTAYEVTTFRTDGDYEDHRRPESVTFVRSLEEDLKRRDFTMNAIAMD 121
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++G +ID GG + R I +G A R ED LR++R RF + G + D A
Sbjct: 122 ERGTIIDPFGGQEAIERRLICTVGAADERFREDALRMMRAVRFVSQLGF-ALAEDTKSAI 180
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
++ + +S ER+ E+ KLL A+ + + G+F + + L + +
Sbjct: 181 VQNAPLMAHISVERMTMEMEKLLAGPFVAEALPLLADTGLFAYLPGLAAKEQLLRSAAAF 240
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + + L D K I + + LP ++ + +
Sbjct: 241 RWPWLTKREERWALLCRA----LDVKDIRPFLRAWKLPNKVIDEAGAILA-ALDDVPRPE 295
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ + G + ++ + AL + + + + + K + G DV
Sbjct: 296 AWTNEQLFSAGLERALSVEAVRAALCGAP-SEPHHEELRRRFAALPIKTKGELAVNGKDV 354
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+++ G P G V L + ++S + +E ++ L +
Sbjct: 355 IRWAGKPAGPWVKETLDAIWRAVVSSEVENEKERIYTWLME 395
>gi|167747291|ref|ZP_02419418.1| hypothetical protein ANACAC_02005 [Anaerostipes caccae DSM 14662]
gi|167653269|gb|EDR97398.1| hypothetical protein ANACAC_02005 [Anaerostipes caccae DSM 14662]
Length = 449
Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats.
Identities = 97/441 (21%), Positives = 174/441 (39%), Gaps = 51/441 (11%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I++ L + ++ +VGG VRD ++ D DI T+ P +V IFS I T
Sbjct: 10 AKQIINQLEQAGYEAYVVGGPVRDCILGKCPTDWDITTSASPYQVKEIFS----YTIDTG 65
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ ++ K+ F++TT R + R +V FT+ K D LRRDFTINA+ + +
Sbjct: 66 IAHGTVTVMMGKEPFEVTTYRVDGEYRDHRRPEEVCFTKSLKEDLLRRDFTINAMAYNDR 125
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ DY GG+ DL+ +TI+ +GDA R ED LRILR RF A G + +
Sbjct: 126 DGLTDYYGGVEDLKKKTIRCVGDARRRFDEDALRILRALRFQAQLGFVIEEETKQAIQKQ 185
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
AK I + LL I+ Y+ G+ K + + + +
Sbjct: 186 AKFLKDISAERIQTELTKLLLSDHP--ETILDAYDLGVTKVVLPEFDRMMETPQNNPHHC 243
Query: 253 EQ--------VFEWKIDSLLRFIVLISWQDKKSI---------------------LSMAK 283
+ + D +LR+ +L+ K + K
Sbjct: 244 YNVGVHTVEALKNTEPDHILRWTMLLHDVGKPEARVEGKIKDSFQGHNTIGEEVSRKILK 303
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
+ + + + + KK + ++ + + L + +++ Q
Sbjct: 304 RLKFDNQTIKQVTRLVYWHDVRFGSLDEVSKKTVRRWASRISVPLFEKLLKVQQADISAQ 363
Query: 344 DT--------------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
T ++ + + L G D++ G+ PG+++G +L
Sbjct: 364 STFMQEEKQQILDRTRLLFEEIKEEEDCLQVKDLALDGKDLISLGMKPGREIGEMLAGLL 423
Query: 390 QEWINSSFQLSQEDLHHLLRK 410
+ + + +E L +RK
Sbjct: 424 ELVLEDPAKNKREVLEQAVRK 444
>gi|88607181|ref|YP_505747.1| polyA polymerase/tRNA nucleotidyltransferase family protein
[Anaplasma phagocytophilum HZ]
gi|88598244|gb|ABD43714.1| polyA polymerase/tRNA nucleotidyltransferase family protein
[Anaplasma phagocytophilum HZ]
Length = 409
Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats.
Identities = 119/408 (29%), Positives = 189/408 (46%), Gaps = 11/408 (2%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
++ + I+ +L +VGG VRDS++ DID+AT +LP V+ K
Sbjct: 6 IDNAGVQRIIRVLESFNGSVRLVGGCVRDSIIQRETTDIDLATDLLPKTVLTSLKAAGIK 65
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
IPT + +GT+ + ++ITTLR D DGR+A VVFT +W+AD+ RRDFT NALY
Sbjct: 66 AIPTGMQHGTVTAVVAGVPYEITTLRLDTKCDGRHASVVFTDNWEADASRRDFTFNALYC 125
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLV 188
D+ GK+ DY G+ DL++RT+ FIGDA RI ED+LRILR FRF A + + + +
Sbjct: 126 DKNGKIYDYFTGIRDLQSRTVAFIGDAEQRINEDFLRILRVFRFHASICSDSALSEEIIN 185
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
K + L +LS ERI SE KLL +N + + M I +I I++ LS
Sbjct: 186 VCSKHARKLALLSKERIRSEFFKLLACRNCVGTLHIMERCDILAQIIP--YHINVGVLSS 243
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
A + K+ +LL I L+ + L
Sbjct: 244 PQIATRSPIAKLAALLHT--ENPAYSVVEIAQNLTAALRLSRKEKNLLETLLLTKLELPL 301
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
++ + +K G ++ + I + + L+ + P++G
Sbjct: 302 TVAQQQKYMNTLGTEIYKDLVIINSLKSASLP----ESILHAHLASSEDFTPVTLPISGK 357
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQL-SQEDLHHLLRKLIASS 415
D+++ G P G+ +G L + W + S++ L ++L+
Sbjct: 358 DLIQLGYPTGRVLGQTLRTLQTMW-EEDIRNVSRDQLLTTAKRLLEEK 404
>gi|329850304|ref|ZP_08265149.1| tRNA-nucleotidyltransferase 1 [Asticcacaulis biprosthecum C19]
gi|328840619|gb|EGF90190.1| tRNA-nucleotidyltransferase 1 [Asticcacaulis biprosthecum C19]
Length = 401
Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats.
Identities = 126/402 (31%), Positives = 193/402 (48%), Gaps = 17/402 (4%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILPDR 58
M IV S + + L K VGG VR+ L+ + D+D++T + PD
Sbjct: 1 MTRIVLTDAMKASGTRAVFAALEARGGKGCVRFVGGCVRNVLLGVPGSDLDLSTQLTPDE 60
Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
S + +PT YGTI + + ++IT+LR D+ TDGR A V +T W D+
Sbjct: 61 TEAALSAAGMRHVPTGKDYGTITAVVDGEPYEITSLREDVETDGRRAVVSYTTVWAKDAQ 120
Query: 119 RRDFTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDF +NALYAD +G V D GL D+ R ++FIG+A RI EDYLRILRFFRF A
Sbjct: 121 RRDFYVNALYADIEGLVYDPTGHGLADIAERRVRFIGEAQMRIREDYLRILRFFRFTA-G 179
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
++D D L A I + G+ LS ER++ E K L NPL A M +GGI I
Sbjct: 180 YALSVDPDSLQACIALQAGIDGLSGERLFGETMKTLSLANPLLAFEAMQSGGILSRIVPG 239
Query: 238 VQEI--SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+ L +L +I E ++ +L+ + + + KS + + + I +
Sbjct: 240 WILVGEGLPELRAMITHSDDAERRLMALVDSGLGLGVNEIKSAQA---RLKFSQAIGERM 296
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
I+ + + +I +L Y +G + + + LA + + ++L +
Sbjct: 297 IAAGDVVTRLEAAEAGDIARLIYRHGRQAVED--AVLLAAVHGDGQP------HELLRLM 348
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397
P FPL G D++ G+ G +VG L + EW+ + F
Sbjct: 349 ADIDVPKFPLKGSDLIARGMTAGPEVGQRLKQIEAEWLAADF 390
>gi|321461613|gb|EFX72643.1| hypothetical protein DAPPUDRAFT_200873 [Daphnia pulex]
Length = 418
Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats.
Identities = 112/419 (26%), Positives = 199/419 (47%), Gaps = 15/419 (3%)
Query: 2 VSIVQHKW--FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59
+ + + +L+ + + K + GG VRD LMN+ D+D ATT P ++
Sbjct: 1 MKVESEDFKSIFTDELVQLQKIFEKHNYEIRFAGGPVRDLLMNIKPHDLDFATTATPQQM 60
Query: 60 MRIFSKTRYKVIP-TSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
+F+ ++I T +GTI + + + F+ITTLR D++ GR+A+V FT+DW+ D+
Sbjct: 61 KDMFNSENIRMINLTGEKHGTITVRINEQENFEITTLRIDVVNHGRHAEVEFTQDWELDA 120
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRD T+N+++ G V DY GG DL+ R + F+GDA R+ EDYLRILR+FRF A
Sbjct: 121 NRRDLTVNSMFLGFDGTVYDYCGGWEDLQKRRVAFVGDARTRMQEDYLRILRYFRFCARI 180
Query: 178 GEKN--IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ D A + +GL +S ERIW E+ ++L ++ + M GI I
Sbjct: 181 SPDPNLHEPDTEAALRENMEGLSRISGERIWLELKQILSNRHAGPLLETMLRLGIAPYIG 240
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
L ++ ++ + + E + ++ + L+ + + L K+ + F
Sbjct: 241 LG-EDPNVKEFKVIWERAKNNNVELLPITLLSALLDSEGAAASLHARLKYPNFDKDLSFF 299
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
I + + + + K+ A + L Y ++ ++
Sbjct: 300 IVEHRNLLPEPFKPLRPYQMIVIDTKQKMKDAIFRGAELLRYQGKQ--------ELANEF 351
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
W P FP+ G D+ G+P GK + ++ + +W ++ FQ+S EDL + +++
Sbjct: 352 EKWVPPRFPVGGADLKDKGVPGGKPMSMVIQKLRSKWKDNDFQISHEDLVRSIPEVMED 410
>gi|327460441|gb|EGF06778.1| polyA polymerase family protein [Streptococcus sanguinis SK1057]
Length = 399
Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats.
Identities = 101/400 (25%), Positives = 180/400 (45%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL+DL+NR ++ +G A R ED LRI+R FRF A +++ D VA
Sbjct: 128 NGQVIDLFQGLDDLKNRILRAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFVAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + G FL + S +L ++ +
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGA--IEFLPDLKGSRAKLERLFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + + L+ D + + KK+ RE + + +
Sbjct: 245 LASDFRFSASE-QAWAALLLALDVQDVKGFLKKWKTSREFAKKVEDLVEITAIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLLQAEELRQAQGLPVDFSAIQNLDASLTIHNKQEMAVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++ PG K+G IL + ++ + E ++ +++
Sbjct: 358 REFEFEPGPKLGQILKELEYAIVDGHLPNNLEAIYAYIKE 397
>gi|326435446|gb|EGD81016.1| CCA-adding enzyme [Salpingoeca sp. ATCC 50818]
Length = 455
Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats.
Identities = 108/404 (26%), Positives = 177/404 (43%), Gaps = 25/404 (6%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
V+ K + + + + + +VGGAVRD L+ +D D ATT LP + ++
Sbjct: 65 VKQKILGTPAVQQLKHIFQEDHHEFRLVGGAVRDILLERWPKDYDFATTALPQQTQQLLE 124
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+V+ T + +GT+ + +++TTLR D V FT DWK D+ RRD TI
Sbjct: 125 SRGVRVVLTGLQHGTVTAVIDNVPYEVTTLRLDHEGAEGTGPVCFTDDWKLDAERRDLTI 184
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNID 183
NA+ D G + DY G + L I F+GD RI ED+LRILR+FRF N +
Sbjct: 185 NAMSMDLDGHIFDYFDGRDHLAQEKIVFVGDPAQRIQEDFLRILRYFRFHGKVCRHNNHE 244
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-DVQEIS 242
+ A +GL+ +S ERIW E++K+L+ + M G+ I L +V++
Sbjct: 245 PAQIQAITDNVQGLESVSGERIWMEMSKILKTARAPELVECMQACGVLPHIQLANVEQHH 304
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
L +L V E + +L+ D + +A + L R +
Sbjct: 305 LQRLRHVHRYELEPATALTALV--------DDVQQFEGVAAAWRLSNAERKLGLFIIQHR 356
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
++ + +++ + L + + W P
Sbjct: 357 DVDVCMNSAQ----------DLLVDGINRTYVTQLCRYQGH-----LDIAVAMQDWAVPE 401
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
FP+TG ++++G+ PG +G +L K W S FQL +E+L
Sbjct: 402 FPITGKKLIQHGLKPGPNMGRVLAALKDNWKQSRFQLGEEELLA 445
>gi|257457449|ref|ZP_05622619.1| tRNA adenylyltransferase [Treponema vincentii ATCC 35580]
gi|257445178|gb|EEV20251.1| tRNA adenylyltransferase [Treponema vincentii ATCC 35580]
Length = 456
Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats.
Identities = 101/449 (22%), Positives = 173/449 (38%), Gaps = 50/449 (11%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
++ K+ + L I + +VGGAVRD + + D DIAT P VMR+F
Sbjct: 1 MEKKFPVPALLKEISGYFRNAGFSAYLVGGAVRDFFLKKAASDWDIATDAQPQEVMRLFR 60
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDF 122
+ IPT I +GT+ II + K+ + TT R++ TDGR+ V +T + D RRDF
Sbjct: 61 ----RTIPTGIEHGTVTIIYKSKHIECTTFRTEADYTDGRHPAAVSYTATIEEDLSRRDF 116
Query: 123 TINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T+NA+ +I D G D+R I+ +G+ R LED LR +R RF A G
Sbjct: 117 TMNAIAVSLPDGIIADPFNGCADIRAGRIRTVGNPLDRFLEDGLRPVRAVRFAAQLGF-A 175
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
ID L A +A + +S ER E K+L PL + M + G+ ++ E
Sbjct: 176 IDGKTLEAIPQALHITQKISIERFREEFTKMLACPAPLTGLRLMESTGLLNLFIPELAEC 235
Query: 242 ------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK------------------- 276
S + + V + + ++
Sbjct: 236 RGVEQGSFHHFDVLDHSFLVCNACPAGMEHIHIRLAGLFHDIGKPATRKQAADGSYTFYR 295
Query: 277 -------SILSMAKKFSLPREIRYFLISFFNCNF--NQKTLSIPEIKKLFYLYGDKVMIA 327
S+ ++ + + + +++ G + +
Sbjct: 296 HEAVSEKITRSIMRRLKYSNAEIEKTAHLVAQHMFHYDPSWTDAAVRRFIVRVGKENIDD 355
Query: 328 KLKIFLALHYN--------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379
+ A + N + T I ++L + + + G D++ GIP GK
Sbjct: 356 LFALRKADVFGLTGSYTEPNFLVEFTARIDKILKEDGAYSLKDLAVNGKDLMALGIPAGK 415
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+G +L + ++ Q ++E L +
Sbjct: 416 CLGLVLHDLLETVLDDPAQNTKETLLPIA 444
>gi|295090763|emb|CBK76870.1| tRNA nucleotidyltransferase/poly(A) polymerase [Clostridium cf.
saccharolyticum K10]
Length = 430
Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats.
Identities = 88/402 (21%), Positives = 162/402 (40%), Gaps = 10/402 (2%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL L ++ VGG VRD+++N D DI T+ P V +F K +
Sbjct: 15 PQVEWILKKLRDSGYEAFAVGGCVRDTILNRIPGDWDITTSAKPVEVKAVF----GKTVD 70
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYAD 130
T + +GT+ +I ++ITT R D DGR+ + FT D + D RRDFTINA+
Sbjct: 71 TGLQHGTVTVIRDHVGYEITTYRIDGEYEDGRHPREVEFTSDLREDLRRRDFTINAMAYS 130
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D GG+ DL+NRTI+ +G+A R ED LRI+R RF + + S
Sbjct: 131 PETGLVDIFGGMEDLKNRTIRCVGNAVERFGEDALRIMRAVRFASQLDFSIEEETYRALS 190
Query: 191 IKAKKGLKILSSERIWSEINKLLE-AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
A + LL + + F + + + +
Sbjct: 191 GIAPNLAHVSKERIQVELTKTLLSGRPQGVLVMEDTGMCPYMTAGFPGIFSKARESGINL 250
Query: 250 IE-AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
E ++ + LR+ V + +K ++ ++ L + + +
Sbjct: 251 EERLKRSALLPQEKSLRYAVFLGHLGEKGACTILRELKLDNDTIRRVKTLVRFMEETLPE 310
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH--QDTCFILQVLSDIIHWKKPLFPLT 366
P ++++ D + + L + + + + +V + +T
Sbjct: 311 DGPALRRMMSQMEDSLFDSLLLMRKTVFPEQMEDVLKTESRCRRVRERGDCIRLKDLAVT 370
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G+D++ G+ PGK++G L + + ++ +E L
Sbjct: 371 GNDLIAAGMKPGKEMGERLRYLFELVLSEPALNEKELLLKAA 412
>gi|258542072|ref|YP_003187505.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-01]
gi|256633150|dbj|BAH99125.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-01]
gi|256636207|dbj|BAI02176.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-03]
gi|256639262|dbj|BAI05224.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-07]
gi|256642316|dbj|BAI08271.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-22]
gi|256645371|dbj|BAI11319.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-26]
gi|256648426|dbj|BAI14367.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-32]
gi|256651479|dbj|BAI17413.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654470|dbj|BAI20397.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-12]
Length = 397
Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats.
Identities = 114/381 (29%), Positives = 185/381 (48%), Gaps = 17/381 (4%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
++ +VGGAVRD ++ S+ DID+A P+ VM+ V+PT +++GT+ +
Sbjct: 26 EARLVGGAVRDLMVGRSIADIDLAVPQPPEEVMQRLKAQGMTVVPTGLAHGTVTAVIDSA 85
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
++ITTLR D+ TDGR+A V +T +W+ D+ RRDFTINA+ D G V DY G +DL N
Sbjct: 86 PYEITTLRRDVETDGRHAVVCWTDNWQEDAARRDFTINAMSCDSTGTVHDYFDGQHDLAN 145
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
+++F+GDA RI ED LRILRFFRF+ YG D+ + A + L LS ERIWS
Sbjct: 146 GSVRFVGDATLRIQEDALRILRFFRFWGRYGRGQADAQAMHAITTQAELLNGLSVERIWS 205
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267
E+ ++L L+ + M GI + + + V Q+ + +
Sbjct: 206 ELKRILAGPKALDVVYMMQQAGILPVLLPEG--------AHVPVFAQLMAFNSPADALLR 257
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
+ DK + MA++ R L + + +S +++ L ++ A
Sbjct: 258 LAALVPDKSA--DMARRLKFSRAEAARLKAMQDEPVPLPDMSDAQLRHLLADTSPDILAA 315
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
+ ++ A H + L ++ + + P+FPL G D++ G PG VG +L
Sbjct: 316 RSWLYQARHADVLGT-------ELRQRLARLEIPVFPLAGRDLLDAGCQPGPHVGQVLKD 368
Query: 388 CKQEWINSSFQLSQEDLHHLL 408
+ W ++
Sbjct: 369 VRNWWQQGGCTADKQTCLAHA 389
>gi|296116685|ref|ZP_06835295.1| putative tRNA nucleotidyltransferase [Gluconacetobacter hansenii
ATCC 23769]
gi|295976897|gb|EFG83665.1| putative tRNA nucleotidyltransferase [Gluconacetobacter hansenii
ATCC 23769]
Length = 434
Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats.
Identities = 122/404 (30%), Positives = 191/404 (47%), Gaps = 8/404 (1%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ + L+ + + +VGGAVRD L +V D+D+AT + P VM +V
Sbjct: 39 TRPETVATLARIWDIVPDARLVGGAVRDLLCGRTVSDMDMATALPPQDVMARLGAAGIRV 98
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+PT +++GT+ + + ++ITTLR D TDGR+A+V +T DW+ D+ RRDFTINA+ D
Sbjct: 99 VPTGLAHGTVTAVLEGRPYEITTLRRDEQTDGRHAQVAWTDDWREDAARRDFTINAMSCD 158
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G V D GG DL ++F+GDAH RI ED LRILRFFRF A YG D+D + A+
Sbjct: 159 RAGVVHDPFGGRADLAAGRVRFVGDAHARITEDALRILRFFRFNARYGGDVPDADAMAAA 218
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
++ LS ERIWSE+ ++L + M +GG+ I + ++S +L +++
Sbjct: 219 TALAPMVERLSVERIWSELRRILSGPRVAATLALMEHGGVLARILPEGYDLS--RLGRLL 276
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
D+LLR L + + + R +R + + L
Sbjct: 277 ACY----GPADALLRCAALFVGDMQVVAQRLRLSRADERFVR--AVHDGALHGGGDGLHP 330
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L L + + + + I +P+F L G DV
Sbjct: 331 GMTGAEIARMLVADPTDILIARTWLRQGEVLGRPDVGWDDLRAIITRCPRPVFTLAGRDV 390
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
V G PPG +VG IL + W++ + LR ++ +
Sbjct: 391 VAAGCPPGPRVGAILAQVRDWWLSGGCVADRVACLAHLRHVLGA 434
>gi|28210893|ref|NP_781837.1| poly(A) polymerase [Clostridium tetani E88]
gi|28203332|gb|AAO35774.1| poly(A) polymerase [Clostridium tetani E88]
Length = 451
Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats.
Identities = 106/440 (24%), Positives = 178/440 (40%), Gaps = 45/440 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++ I+ +L + ++ VGG +RDSL+N D DI T ++V++IF + V+
Sbjct: 12 KEVKYIIDILEEHGYEAYAVGGCIRDSLLNRIPHDWDITTDAKGEQVIKIFKSLDFNVVK 71
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYAD 130
T I YGT+ +I ++ITT R D DGR+ + FT + K D RRDFT+NA+ +
Sbjct: 72 TGIRYGTVTLIINSIGYEITTYRIDGNYLDGRHPEKVEFTNNLKEDLSRRDFTVNAMAYN 131
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ + DY G DL+N+ IK +GD R ED LR++R RF A NI+ + A
Sbjct: 132 HKKGLADYYNGREDLKNKIIKSVGDPLKRFSEDALRMIRGVRFSAQLDF-NIEENTKEAI 190
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K +K +S ERI E NK+L + N I + G+ K + +
Sbjct: 191 KKLSSNIKNVSVERIREEFNKILLSSNTYK-IKELEEYGLLKNFLPEYAFTKRIVQNNQY 249
Query: 251 EAEQVFEWKIDSL--------LRFIVLISWQDKKSIL----------------------S 280
+ E I S+ LR +L+ K S
Sbjct: 250 HIYNLEEHLICSIENVDKKLHLRLTMLLHDIGKSQCKTTDNKGVDHFCGHEKISSEMAGS 309
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ ++ + + S + + IKKL G ++ LK+
Sbjct: 310 ILRRLKYDNKTIDKVTSLIKYHHYPIE-NKRNIKKLLNKIGLELFRDLLKVKEGDIKAQN 368
Query: 341 TH----------QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390
+ + ++L D + + G D++ G G+ +G L +
Sbjct: 369 PMFFKKRYESILEAKKVLEEILKDKECFTLKDLAINGKDLIDLGYKDGRNIGKTLNTLLE 428
Query: 391 EWINSSFQLSQEDLHHLLRK 410
+ +E+L ++K
Sbjct: 429 LVLEKPELNKKEELIKYIKK 448
>gi|332361335|gb|EGJ39139.1| polyA polymerase family protein [Streptococcus sanguinis SK1056]
Length = 399
Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats.
Identities = 101/400 (25%), Positives = 179/400 (44%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFE----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GL+DL NR ++ +G A R ED LRI+R FRF A +++ D A
Sbjct: 128 NGQVIDLFQGLDDLENRILRAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFAAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + G FL + S +L ++ +
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGA--IEFLPDLKGSRAKLERLFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + + L+ D +++ KK+ RE + + +
Sbjct: 245 LASDFRFSASE-QAWAALLLALDVQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------INLLLQAEELRQAQGLAVDFSAIQNLDASLTIHNKQEMVVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++G PG K+G IL + ++ E ++ +++
Sbjct: 358 REFGFEPGPKLGQILKELEYAIVDGYLPNDLEVIYAYIKE 397
>gi|255282035|ref|ZP_05346590.1| poly A polymerase [Bryantella formatexigens DSM 14469]
gi|255267354|gb|EET60559.1| poly A polymerase [Bryantella formatexigens DSM 14469]
Length = 457
Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats.
Identities = 95/449 (21%), Positives = 172/449 (38%), Gaps = 62/449 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ +I+ L + ++ VGG VRDS++ D DI T+ P +V +F + +
Sbjct: 7 EQVKHIIGRLEEAGFEAYAVGGCVRDSIIGREPDDWDITTSAKPQQVKALFD----RTVD 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVV-FTRDWKADSLRRDFTINALYAD 130
T I++GT+ ++ K +++TT R D R+ K V FT + D RRDFT+NA+
Sbjct: 63 TGIAHGTVTVMLDKTGYEVTTYRIDGEYADSRHPKEVSFTDNLTEDLRRRDFTVNAMAYS 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +ID GG+ DL+ I+ +G+A R ED LRILR RF A G + A
Sbjct: 123 ESRGLIDVFGGIRDLQEGIIRCVGNAQERFSEDALRILRAVRFSAQLGFSIEEETQAAAR 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
A I + + L+ + Y GI + + +
Sbjct: 183 NMAGNLKNISAERIQGELVRLLVSPHP--EILGKAYELGITAVVLPEFDAMMQTPQHHKH 240
Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDKKSIL---------------------SM 281
V E + D ++R VL K + M
Sbjct: 241 HIYNVGEHTLKALEYSEPDRIIRLAVLCHDFGKPASRTTKDGVDHFYGHPAISEELAGRM 300
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKT---------------LSIPEIKKLFYLYGDKVMI 326
++ + + + + + +S +++L Y G ++
Sbjct: 301 LRRLKFDNDTIRKVKALVRLHDAKPPLNDGTAEKLRSGGRAVSERSVRRLVYRCGKELFP 360
Query: 327 AKLKIFLALHYNNLTHQDTCFIL----------QVLSDIIHWKKPLFPLTGDDVVKYGIP 376
A +++ A ++ T +L ++L ++G D++ GI
Sbjct: 361 ALMQVCGADVLAQSDYRKTEKLLLLEQMYDIYEEILQKEECLSLKELAVSGRDLIGAGIA 420
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLH 405
PGK++G IL ++ ++ ++E L
Sbjct: 421 PGKEIGEILERMLEDVLDEPQHNTREYLM 449
>gi|239624748|ref|ZP_04667779.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521134|gb|EEQ61000.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 448
Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats.
Identities = 101/445 (22%), Positives = 173/445 (38%), Gaps = 55/445 (12%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
IL+ LN ++ +VGG VRD ++ D DI T+ LP++V ++F + + T
Sbjct: 8 PAEEILTKLNDNGYEAYVVGGCVRDMILGREPGDWDITTSALPEQVKQVFR----RTVDT 63
Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R D DGR+ V FT D RRDFTINA+ +
Sbjct: 64 GIQHGTVTVMMGDEGYEVTTYRIDGEYADGRHPDSVTFTPSLTEDLKRRDFTINAMAYNG 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
++D GG++DL I+ +G+ R ED LRILR RF A G I+ A
Sbjct: 124 NTGLVDEFGGMDDLDRGIIRCVGEPMDRFSEDALRILRAIRFSAQLGF-TIEGRTYEAIR 182
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM------YNGGIFKEIFLDVQEISLDQ 245
+ +S ERI E+ KLL + NP + + Y F +++ ++ LD+
Sbjct: 183 AIAPNMVHVSKERIQVELTKLLLSPNPGHINMVYETGISPYVSETFHKVYCREEDGGLDE 242
Query: 246 LSQVIEAEQVFEWKID---------------------------------SLLRFIVLISW 272
QV + D +R+ +
Sbjct: 243 GKQVEREDGQRPECADRQRPEGENGRQVEREDGKPFFVIPAIPAQVPPVRHMRWAAFLRK 302
Query: 273 QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
+ + K L + + + + + I+ + L
Sbjct: 303 CPPDEAVRILKDLKLDNDTINRVRTLVSWQDYRLGPDKYSIRTAMSRMEPDLFDDLLDFR 362
Query: 333 LALHYNNLTHQDTC---------FILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383
+ L TC + ++ D + G+D++K G+ PGK+VG
Sbjct: 363 MCLAQMESEGNKTCQEHLAHTAMLVDEIRRDGDCISLKTLAVGGNDIIKAGVKPGKEVGL 422
Query: 384 ILVHCKQEWINSSFQLSQEDLHHLL 408
L + + + ++E L L
Sbjct: 423 ALARLLEMVLEEPGRNTKEYLLQHL 447
>gi|126734430|ref|ZP_01750177.1| polyA polymerase family protein [Roseobacter sp. CCS2]
gi|126717296|gb|EBA14160.1| polyA polymerase family protein [Roseobacter sp. CCS2]
Length = 378
Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats.
Identities = 130/406 (32%), Positives = 197/406 (48%), Gaps = 31/406 (7%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
++ + W D + LL ++ VGG VR+ L++ V D+D++T LP+ VM+
Sbjct: 1 MTRISAPWLDDDASQQVCKLLADAGYQAWFVGGCVRNELLDEPVADLDLSTDALPEFVMK 60
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ + K IPT I +GT+ +I F+ITT R D+ TDGR A V ++ + D+ RRD
Sbjct: 61 LAKAAKIKAIPTGIDHGTVTLIVDDVPFEITTFRRDVATDGRRATVAYSDNMTDDARRRD 120
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--E 179
FT+NALYAD G++ D +GGL DL+ R I+FI DA RI EDYLRILRFFRF+A YG
Sbjct: 121 FTMNALYADADGQIADPLGGLPDLKARRIRFIEDADRRIKEDYLRILRFFRFYAWYGDVN 180
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
D DGL A +GL+ LS ERI +E+ KLL A +P A+ M + G ++ +
Sbjct: 181 DGPDVDGLAACADNIEGLQSLSVERITAEMLKLLAAPDPAPALASMTSTGALAQVLPGAE 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
SL L + EQ + LR + ++ + ++ +
Sbjct: 241 PGSLAVLIHL---EQSLTIAPNP-LRRLAVLGGKPGDALRLSKTQ--------------- 281
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
S + Y +G +V + L + A ++ L I +
Sbjct: 282 -MRTLDHLTSGLSPVEASYRHGVQVGLDVLLVQSASLGQDIDKT-------ALKPIENAA 333
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
K +FPL D++ G +G+ L + WI S F L++ L
Sbjct: 334 KQVFPLKAADLMPA--LSGPALGSALKEAETRWIRSGFTLTKAQLL 377
>gi|327489640|gb|EGF21432.1| polyA polymerase family protein [Streptococcus sanguinis SK1058]
Length = 399
Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats.
Identities = 100/400 (25%), Positives = 178/400 (44%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKVAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID GLNDL N+ ++ +G A R ED LRI+R FRF A +++ D A
Sbjct: 128 NGQVIDLFQGLNDLENQILRAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFAAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + G FL + S +L ++ +
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGA--IEFLPDLKGSRAKLERLFD 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + + L+ D +++ KK+ RE + + +
Sbjct: 245 LASDFRFSASE-QAWAALLLALDLQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L L D I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLLQAEELRQAQGLPVDFSAIQNLDASLTIHNKQEMVVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++ PG K+G IL + ++ E ++ +++
Sbjct: 358 REFDFEPGPKLGQILKELEYAIVDGRLPNDLEAIYAYIKE 397
>gi|153815226|ref|ZP_01967894.1| hypothetical protein RUMTOR_01460 [Ruminococcus torques ATCC 27756]
gi|317502317|ref|ZP_07960486.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331089921|ref|ZP_08338813.1| hypothetical protein HMPREF1025_02396 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145847485|gb|EDK24403.1| hypothetical protein RUMTOR_01460 [Ruminococcus torques ATCC 27756]
gi|316896273|gb|EFV18375.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330403153|gb|EGG82714.1| hypothetical protein HMPREF1025_02396 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 449
Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats.
Identities = 88/443 (19%), Positives = 174/443 (39%), Gaps = 48/443 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ I+ L ++ VGG VRDS++ +D DI T+ P+ V ++F + + T
Sbjct: 9 VMMIIKNLQLHGYEAYAVGGCVRDSILARRPKDWDITTSARPEEVKKLFR----RTVDTG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVV-FTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R D + R+ K V FT + D RRDFTINA+ + +
Sbjct: 65 IEHGTVTVLLGRDGYEVTTYRIDGAYEDSRHPKEVLFTNRLEEDLRRRDFTINAMAYNDE 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+++D GG+ DL + I+ +GD R ED LRILR RF A +
Sbjct: 125 VRLVDVFGGMQDLNHHLIRCVGDPRERFSEDALRILRAVRFSAQLNFPIEEETAEAVREL 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
A I + + L+ A I Y GI + I + ++ + +
Sbjct: 185 APTLENISAERIQAELVKLLVSAHPER--IQDAYELGITRIILPEWDAMAGVEQNTPHHK 242
Query: 253 EQVFEW--------KIDSLLRFIVLISWQDKKS----------------------ILSMA 282
V + K D +LR +L K + +
Sbjct: 243 YDVAQHTLHALKYVKRDKILRLTMLFHDMGKPARKTTDENGRDHFKGHALVSEAIARDVM 302
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
++ + + + + + +++ G + L + +A ++
Sbjct: 303 QRLKFDNDTIKKVTRLVCFHDYRTEATPANVRRAMNRIGVDLFPYYLAVRMADAKAQSSY 362
Query: 343 QDTCFILQV--LSDIIHWKKPL--------FPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
+ I + + ++G D++ G+ PG ++G +L +
Sbjct: 363 RRREKIENIVAMRKFYQEAIIKDECVTLRQLAVSGRDLMNLGMRPGVEIGRMLSELLEYV 422
Query: 393 INSSFQLSQEDLHHLLRKLIASS 415
I++ + ++ L + ++K I+
Sbjct: 423 IDNPEKNDKKILCNYVKKKISQR 445
>gi|328948084|ref|YP_004365421.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Treponema succinifaciens DSM 2489]
gi|328448408|gb|AEB14124.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Treponema succinifaciens DSM 2489]
Length = 467
Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats.
Identities = 98/456 (21%), Positives = 171/456 (37%), Gaps = 59/456 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
LI + + + KS +VGGAVRD LM + D DIAT P++VM+IF V+PT
Sbjct: 13 LIKVSKIFSDNGFKSYLVGGAVRDMLMGKTCHDYDIATNATPEQVMKIFRN----VVPTG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ I + TT R++ DGR+ + + D RRDFT+NA+ A+
Sbjct: 69 IAHGTVTIHIFGLELETTTFRTETDYSDGRHPDKVKYAETIEEDLSRRDFTMNAIAAELS 128
Query: 133 GKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
I D G D++ + I+ +GD R ED LR +R RF G + + S
Sbjct: 129 TGKITDPFDGQKDIQRKIIRTVGDPFERFSEDGLRPVRAIRFSGQLGFEIEEKTFDAISQ 188
Query: 192 KAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---------QEI 241
+ K ++ +S+ER E K+L+ + P + + G+ K E
Sbjct: 189 EKILKKVEGISTERFRDEFCKILKTEKPSVGLKLLEQTGMLKIFIPQFSVCRNCLQQDER 248
Query: 242 SLDQLSQVIEAEQVFEWKIDSLL------------------------RFIVLISWQDKKS 277
+ + L + + ++ S
Sbjct: 249 GFHEFDVADHILYACDGCPKENLTVRLAAFYHDIGKPESKTIEIVNGKERIHFHGHEQIS 308
Query: 278 ILS---MAKKFSLPREIRYFLISFFNCNF--NQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
+ + + + + + +++ G + + +
Sbjct: 309 AEKAKASMASLKFSNDEIRKVSHLVKEHMFHYESSWTDSAVRRFIIRVGAENLDNLFLLR 368
Query: 333 LALHYN-------------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379
LA Y NL + I +++++ + G D++ GIP GK
Sbjct: 369 LADIYGMHRVPLQQNSPSWNLLVELKKRIEKLMAENSALSLKDLKVNGKDLMSEGIPSGK 428
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+G IL + +S +E L L +KL +
Sbjct: 429 IMGKILNELFETVTDSPEMNDKEKLIGLAKKLFSEK 464
>gi|94990240|ref|YP_598340.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS10270]
gi|166233883|sp|Q1JHE0|CCA_STRPD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|94543748|gb|ABF33796.1| poly(A) polymerase / tRNA nucleotidyltransferase [Streptococcus
pyogenes MGAS10270]
Length = 402
Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats.
Identities = 103/403 (25%), Positives = 182/403 (45%), Gaps = 18/403 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF+ + +
Sbjct: 13 ALPILTKIKEAGYEAYFVGGSVRDVLLGRPIHDVDIATSSYPEETKAIFN----RTVDVG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL DL+ + ++ +G A R ED LRI+R FRF A +I++ A
Sbjct: 129 GQVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASLDF-DIEATTFEAMRS 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQLSQVIE 251
L+ +S ER ++E +KLL A + I M + L QE L+ L ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIVSLK 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + ++ ++ +D KS L K + + LI+ + + +
Sbjct: 248 DNFTFSDHHQAWAYVMISLAIEDPKSFLKAWKTSNDFQRYVTKLIALYRIRQERSFEKL- 306
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y YG K+ + L D I + ++ K L G ++
Sbjct: 307 ----DIYQYGKKMA----SLVEDLRKAQSLSVDMDHINTLDQALVIHDKHDIVLNGSHLI 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
K +G+ PG ++G +L + + + +R+ +A
Sbjct: 359 KDFGMKPGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELA 401
>gi|91204980|ref|YP_537335.1| Poly(A) polymerase [Rickettsia bellii RML369-C]
gi|157827690|ref|YP_001496754.1| Poly(A) polymerase [Rickettsia bellii OSU 85-389]
gi|91068524|gb|ABE04246.1| Poly(A) polymerase [Rickettsia bellii RML369-C]
gi|157802994|gb|ABV79717.1| Poly(A) polymerase [Rickettsia bellii OSU 85-389]
Length = 398
Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats.
Identities = 126/402 (31%), Positives = 193/402 (48%), Gaps = 20/402 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
ILSLLNK ++ ++GG+VRD+L+ DIDIAT +LP+ V I S+ + K
Sbjct: 10 IPSKGYEKILSLLNKKG-EARLIGGSVRDALLGKESYDIDIATNLLPNEVTSILSQAKIK 68
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
IPT + +GTI I K+ F ITTLR D+ +GR+AKVVFT D+ D+ RRDFTINAL
Sbjct: 69 TIPTGLKFGTITAILEKEQFQITTLRKDIECNGRHAKVVFTNDFAEDAERRDFTINALSY 128
Query: 130 DQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
K+ DY G DL+ R + FI AH RI EDYLRILRFFRF ++Y +
Sbjct: 129 CPFKGKIYDYFNGFEDLKQRKVVFIRAAHQRIKEDYLRILRFFRFSSYYANRLNPEGFKA 188
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ + ++ + +P + M+ GI IF +
Sbjct: 189 CDELKSGLMSLSRERIKSEFDRIIVSSNSP-EVLKAMFEIGILALIFSIQNY-------E 240
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ AEQ + ++ R+ +L+ +Q ++ + E L + N T
Sbjct: 241 IKIAEQAKSFNLELSTRYALLLYYQKDLNLKNFLDWKFSKHETIQILSILDFIHKNIITE 300
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ L + + + L N L D I + ++ ++P FP+ G+
Sbjct: 301 FDIKKIWLEHKNYKEYL---------LTANILGKIDYSQITKFINIYDSLERPKFPINGN 351
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
D++ I K++G L + K+ WI+ F+LS+ +L LRK
Sbjct: 352 DLLNMNIEQ-KEIGKKLNYLKKIWIDQDFKLSKLELVSFLRK 392
>gi|254466149|ref|ZP_05079560.1| polyA polymerase family protein [Rhodobacterales bacterium Y4I]
gi|206687057|gb|EDZ47539.1| polyA polymerase family protein [Rhodobacterales bacterium Y4I]
Length = 383
Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats.
Identities = 123/410 (30%), Positives = 189/410 (46%), Gaps = 34/410 (8%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ W +D + + + VGG VR++L+ V D+DIAT P++VM + +
Sbjct: 3 IDQPWLNDKATQAVCEAVTADGAQVLFVGGCVRNALLCEPVSDMDIATDARPEQVMELAA 62
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ K +PT I +GT+ ++ +ITT R D+ TDGR A V F+ D D+ RRDFT+
Sbjct: 63 RAGIKAVPTGIDHGTVTLVKNGIPHEITTFRKDVATDGRRAVVAFSTDIAEDARRRDFTM 122
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NI 182
NA+YA G+++D +GGL DL R ++FIG A HRI EDYLR LR+FRF A YG++
Sbjct: 123 NAIYARPDGEIVDPLGGLADLTKRRVRFIGTAEHRIREDYLRSLRYFRFHAWYGDQAEGF 182
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D D L A GL LS ER+ +E+ KLL A +P ++ M G+ I + +
Sbjct: 183 DPDALAAISANLDGLASLSKERVGAELVKLLAAPDPAPSVAAMRQAGVLALILPGADDRT 242
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
L L + +R + + + + L + L
Sbjct: 243 LAPLIHLEAGRAASG------IRRLAALGGEGLQEA------LRLSKAQASHLA-----A 285
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +L Y G + + L + AL L L + DI + +
Sbjct: 286 IRKAAAGTSQAGELGYRLGAQKALDALLLRAALLEQPLP-------LDLEIDITQGARAV 338
Query: 363 FPLTGDDVVKYGIPP---GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
FP+ D+ P G +G + + WI S F L +E+L LR
Sbjct: 339 FPVKARDL-----QPDLTGPDLGAAMKKMEANWIASGFTLCREELLDSLR 383
>gi|296284409|ref|ZP_06862407.1| tRNA nucleotidyltransferase [Citromicrobium bathyomarinum JL354]
Length = 390
Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats.
Identities = 125/413 (30%), Positives = 194/413 (46%), Gaps = 27/413 (6%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ Q +W +DL ++ + G VGGAVRD+L+ V+DID AT + P++V+
Sbjct: 1 MPQAQWTQRADLAALVEAIGPGN--IRWVGGAVRDTLLGAPVKDIDAATPLRPEQVVEAC 58
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
+ +PT I +GTI ++ ++TTLR D+ TDGR A V F DW+ D+ RRDFT
Sbjct: 59 KAAGIRTVPTGIDHGTITVLTDGGPVEVTTLREDVSTDGRRATVAFASDWREDAARRDFT 118
Query: 124 INALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
INALYAD ++ DY GGL DL R ++FIGDA RI ED+LRILR++RF A +G
Sbjct: 119 INALYADPATLELFDYFGGLQDLEARRVRFIGDARQRIREDHLRILRYYRFQARFGAALD 178
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ A K LS ER+ E+ +L +P I M+ G+ I +
Sbjct: 179 GEAEEACAELAPML-KGLSRERVAMELTAILALPDPAPTIARMHEHGVLPVILPEAGAEQ 237
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ L +++ E + D ++R L+ D + ++A + L R+ R L+
Sbjct: 238 IAALQRLVATEAACDTAPDPIVRLSALLPA-DGSTAETVAARLRLSRKHRDLLVCLAA-- 294
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
++ K L Y G +L + + I W P
Sbjct: 295 --REASDAEAPKALAYTQGSACAAGRLLLGGSDP----------------RVIAGWDIPQ 336
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
PL G ++V G+ G +V L + W+ F + + LL +++ S
Sbjct: 337 LPLKGGEIVARGL-SGAEVSKTLRAVEARWVAEDFP-DRARVLTLLDEVLQSR 387
>gi|58038811|ref|YP_190775.1| Poly(A) polymerase/t-RNA nucleotidyltransferase [Gluconobacter
oxydans 621H]
gi|58001225|gb|AAW60119.1| Poly(A) polymerase/t-RNA nucleotidyltransferase [Gluconobacter
oxydans 621H]
Length = 396
Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 113/381 (29%), Positives = 178/381 (46%), Gaps = 14/381 (3%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K+ +VGG+VRD L ++V D+D+AT PD V R + +VIPT +++GT+ +
Sbjct: 26 KARLVGGSVRDLLAGVAVHDLDLATPEPPDDVQRRLEQAGIRVIPTGLAHGTVTALLDSV 85
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
++ITTLR D TDGR+A V +T+DW D+ RRDFTINA+ D+ ++ DY GG D++N
Sbjct: 86 PYEITTLRRDEETDGRHAIVAWTQDWAEDAARRDFTINAMSLDRHDRLHDYFGGREDIQN 145
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
++F+GDA RI ED LR LRFFRF A YG D A + + LS+ER+ S
Sbjct: 146 HRVRFVGDASRRIAEDALRALRFFRFDARYGHGVPDRKACQAVSEQLGLIGTLSAERVAS 205
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267
E+ ++L I M + G+ + + + + L++L E + SLLR
Sbjct: 206 ELLRILSGPRLNETIGAMASVGLLQVLLPEPDQHFLNRLLA-------CEAPVSSLLRLF 258
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
L +A + L + ++ + + + + D +
Sbjct: 259 ALCHRNSP----ELAGRLKLSNADGAKIEAWASAQPALHPELSDDDLRRLRVLQD---LD 311
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
L L L + S + +P FPL+G D + G+ PG +G L
Sbjct: 312 LLVERSWLQQARLVGAPDSVWDRFRSRLQAMPQPEFPLSGKDAIAQGVRPGPGMGQWLKT 371
Query: 388 CKQEWINSSFQLSQEDLHHLL 408
+ W+ + L
Sbjct: 372 GRDWWMAQGCLPDRSACLAYL 392
>gi|160941553|ref|ZP_02088885.1| hypothetical protein CLOBOL_06451 [Clostridium bolteae ATCC
BAA-613]
gi|158435518|gb|EDP13285.1| hypothetical protein CLOBOL_06451 [Clostridium bolteae ATCC
BAA-613]
Length = 442
Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 88/427 (20%), Positives = 159/427 (37%), Gaps = 36/427 (8%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
I++ LN+ ++ +VGG VRD L+ D DI T+ LP++V +F + + T
Sbjct: 14 PAEEIINKLNEHGYEAYVVGGCVRDMLLGREPGDWDITTSALPEQVKEVFR----RTVDT 69
Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ K+ +++TT R D +DGR+ V FT D D RRDFTINA+ +
Sbjct: 70 GIQHGTVTVMMGKEGYEVTTYRIDGEYSDGRHPNSVEFTPDLVEDLKRRDFTINAMAYNS 129
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN---------- 181
+D GG+ DL I+ +G+ R ED LRILR RF A G
Sbjct: 130 HTGFVDKFGGVEDLEKGIIRCVGEPMDRFTEDALRILRAIRFSAQLGFSIEERTYEAIKV 189
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM-----------YNGGI 230
I + + S + + + L+ + +
Sbjct: 190 IAPNMVHVSKERIQVELTKLLLSSHPDYISLVYETGISPFVSEKFHGAYAADSGDWAVPS 249
Query: 231 FKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
V+ + + A Q D L + +
Sbjct: 250 IPAGVPAVKHMRWAAFLRECSASQAAGILKDLKLDNDTSYRVRTLVEWQGKKVGAEDGEK 309
Query: 291 I--RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
++ Q S I++ ++ L + + L + +++ ++
Sbjct: 310 DCLKHGKEEGMKEIAKQPEPSRASIRRAMSQMEPELFDDLLTLKMCLSEDASDDRESQWL 369
Query: 349 -------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401
++ S+ ++G D++ G+ PG++VGN L + + ++
Sbjct: 370 CQVRDLTEEIRSNRDCISLKTLAVSGHDIMGAGVKPGREVGNTLARLLDMVLEEPQRNTK 429
Query: 402 EDLHHLL 408
E L L
Sbjct: 430 EYLLAHL 436
>gi|312135461|ref|YP_004002799.1| polynucleotide adenylyltransferase region [Caldicellulosiruptor
owensensis OL]
gi|311775512|gb|ADQ04999.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor
owensensis OL]
Length = 394
Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 103/400 (25%), Positives = 184/400 (46%), Gaps = 19/400 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D + ++ LN+ K+ +VGG +RD L++ QD DIAT P+ V+ +F K
Sbjct: 4 LKDEPI-KVIRTLNQHGFKAYLVGGCLRDYLLSKEPQDFDIATDARPEDVIHLFE----K 58
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
IPT I +GT+ +I ++TT R + R+ KV FT D RRDFTINA+
Sbjct: 59 TIPTGIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMA 118
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+IDY GG+ DL+++ ++ +G+ + R ED LRILR RF I+++
Sbjct: 119 YHPDEGLIDYFGGIEDLKSKIVRCVGNPNERFFEDALRILRCIRFATQLSFV-IENETFE 177
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K LK +S ERI E++K LE+KN + +Y G+ I + +I L LSQ
Sbjct: 178 ALKSLKDLLKKISKERINIELSKTLESKNSSYGLELLYESGVGSIIIPEFSQIYLY-LSQ 236
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
V ++K+ + +D + + + R I CN+ +
Sbjct: 237 VGFDFIPTKFKVPAFFAC-----LKDGLLVEKLMRDLKFDRRNISLAIKL--CNYLKMHY 289
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ E+ K + ++ + + L + + + + I + G
Sbjct: 290 NAEELIKRIFFEEEENVEDIIFTMSILKNDTKITETFDILKKQNRLIRKKDVK---INGK 346
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
D++K G+ G+++G L + + + + +++++ + +
Sbjct: 347 DLLKMGLK-GEEIGKTLNLIYEYILKNPEKNNKDEILNYV 385
>gi|163850893|ref|YP_001638936.1| polynucleotide adenylyltransferase region [Methylobacterium
extorquens PA1]
gi|163662498|gb|ABY29865.1| Polynucleotide adenylyltransferase region [Methylobacterium
extorquens PA1]
Length = 424
Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 123/399 (30%), Positives = 194/399 (48%), Gaps = 7/399 (1%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + L+ L+ +++ +VGG VRD+L+ V DID+ATT+ P+ VM K K
Sbjct: 23 LARAGVQACLTALDAPGEETRLVGGCVRDALLGTIVADIDLATTLRPEAVMACARKAGIK 82
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ T I +GT+ ++ + ++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL
Sbjct: 83 AVGTGIEHGTVTLVVGGEPHEVTTLREDVETDGRHAVVRFGRDFVRDAERRDFTINALSL 142
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D G++ D GG+ DL ++FIGDA R+ ED LR+LRFFRF A YG D++GL A
Sbjct: 143 DAGGRLHDTTGGVADLAAGRVRFIGDAATRLREDALRLLRFFRFHARYGSGAPDAEGLAA 202
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
SI A+ L LS ER+ +E KLL A ++A+ + G+ I V E+ +L++
Sbjct: 203 SIAARDSLDRLSRERVRAEFLKLLLAPRAVDAVAILSETGLLPRILGGVGELG--RLAR- 259
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
AE + + + + +D + + + ++ +
Sbjct: 260 -CAEAEPRLDATARFAALAVRTIEDADRLQASLRLSRAEHARLTGYAIALAALHDRPVIE 318
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ L YG + L +AL ++ +P+ P+TG D
Sbjct: 319 ADAVPALVATYGAGPLRELL---IALDGEPRPRVTPEARTKLDRMEAAGTRPVLPVTGAD 375
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+V G+ PG+ VG L + W+ S E L+
Sbjct: 376 LVARGVAPGRAVGAGLRAARDLWLASGCPDDAETRERLI 414
>gi|283798454|ref|ZP_06347607.1| poly A polymerase [Clostridium sp. M62/1]
gi|291073859|gb|EFE11223.1| poly A polymerase [Clostridium sp. M62/1]
Length = 430
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 87/402 (21%), Positives = 162/402 (40%), Gaps = 10/402 (2%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ +L L ++ VGG VRD+++N D DI T+ P V +F K +
Sbjct: 15 PQVEWLLKKLRDSGYEAFAVGGCVRDTILNRIPGDWDITTSAKPVEVKAVF----GKTVD 70
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYAD 130
T + +GT+ +I ++ITT R D DGR+ + FT D + D RRDFTINA+
Sbjct: 71 TGLQHGTVTVIRDHVGYEITTYRIDGEYEDGRHPREVEFTSDLREDLRRRDFTINAMAYS 130
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D GG+ DL+NRTI+ +G+A R ED LRI+R RF + + S
Sbjct: 131 PETGLVDIFGGMEDLKNRTIRCVGNAVERFGEDALRIMRAVRFASQLDFSIEEETYRALS 190
Query: 191 IKAKKGLKILSSERIWSEINKLLE-AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
A + LL + + F + + + +
Sbjct: 191 GIAPNLAHVSKERIQVELTKTLLSGRPQGVLVMEDTGMCPYMTAGFPGIFSKARESGINL 250
Query: 250 IE-AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
E ++ + LR+ V + +K ++ ++ L + + +
Sbjct: 251 EERLKRSALLPQEKSLRYAVFLGHLGEKGACTILRELKLDNDTIRRVKTLVRFMEETLPE 310
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH--QDTCFILQVLSDIIHWKKPLFPLT 366
P ++++ D + + L + + + + +V + +T
Sbjct: 311 DGPALRRMMSQMEDSLFDSLLLMRKTVFPEQMEDVLKTESRCRRVRERGDCIRLKDLAVT 370
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G+D++ G+ PGK++G L + + ++ +E L
Sbjct: 371 GNDLIAAGMKPGKEMGERLRYLFELVLSEPALNEKELLLKAA 412
>gi|170055265|ref|XP_001863506.1| CCA-adding enzyme [Culex quinquefasciatus]
gi|167875250|gb|EDS38633.1| CCA-adding enzyme [Culex quinquefasciatus]
Length = 430
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 120/415 (28%), Positives = 199/415 (47%), Gaps = 17/415 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L +++ L + + + + GGAVRD LM L +DIDIATT P + IF+K +
Sbjct: 24 IFTKELEDLIELFRRYDHEIRVAGGAVRDILMGLCPKDIDIATTATPTEMKEIFTKENIR 83
Query: 70 VIP-TSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
++ +GTI + F+ITTLR D +TDGR+A+V+ T+DW D+ RRD TIN++
Sbjct: 84 MVNMNGEKHGTITPRINDRENFEITTLRIDAVTDGRHAEVIHTKDWLLDANRRDLTINSM 143
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSD 185
+ G V DY G +DL+ R + F+GD RI EDYLRILR+FRF+ N D +
Sbjct: 144 FLGFDGSVYDYFYGYDDLQKRRVAFVGDPDLRIKEDYLRILRYFRFYGRIAERIDNHDKE 203
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L K GL +S ERIW E K++ + V M N + I L + +
Sbjct: 204 TLRIIAKNASGLAKISGERIWQEWKKIMAGNFGCDLTVKMINSDLSASIGLPEKPNVEEF 263
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ E V I + L+ + L++ KF++ + ++ F
Sbjct: 264 VRVFKNIESVQGGDIQPITPLSALLHTPEDAITLNLRLKFTVFERELAYFLTQNRDEFES 323
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+P + + G + + + L ++ ++ + + W+ P FP+
Sbjct: 324 VNELLPFQQLSLHTLGSAKLKKEYVLELLRYHGK---------RELYAQLKEWQIPAFPI 374
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH----HLLRKLIASSQ 416
G+ ++++G P G K+G ++ K W + F +S+ DL +L KL + +
Sbjct: 375 KGNVLIEHGAPKGPKLGLVMNELKMVWAANQFDMSEPDLLGHLPAVLEKLDLARK 429
>gi|296112020|ref|YP_003622402.1| polynucleotide adenylyltransferase [Leuconostoc kimchii IMSNU
11154]
gi|295833552|gb|ADG41433.1| polynucleotide adenylyltransferase [Leuconostoc kimchii IMSNU
11154]
Length = 403
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 95/404 (23%), Positives = 172/404 (42%), Gaps = 18/404 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
D L L ++ VGGAVRD L+N + D+DIAT+ P+ V R+F+ +
Sbjct: 11 KDAQPALKRLEDAGHEAYFVGGAVRDMLLNKPIHDVDIATSAFPEEVKRLFN----TTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ ++ITT R++ R KV F R D RRDFTINAL
Sbjct: 67 TGIQHGTVMVLDFGNGYEITTFRTESTYTDFRRPDKVTFVRSLLEDLKRRDFTINALAMT 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G ++D GL+DL+ I+ +GDA R ED LR++R RF A +I D A
Sbjct: 127 HTGDIVDLFNGLSDLKKGIIRAVGDAEVRFTEDALRMMRALRFSAQLSF-DIAVDTQKAL 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL+ + ++ + G+ + ++ L L +
Sbjct: 186 KTLAPNLEKIAVERIRVEFEKLLQGEKAAQSMEMAVHDGVIPYLPGHLENWDLTPLISDL 245
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ Q ++ + ++ S + + + + RE + SI
Sbjct: 246 KIRQPQHHQV--VWAHLLSRSSLQVEDMKKFMRLWKTSREDIKAVAMIAPIARQIDQASI 303
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
++ +++ + ++ L + I+ +L + + + G+ +
Sbjct: 304 FDLYRIYSY--------RNELIEVLQLMGTATETIANIVHMLKTLPIKQSSDLAINGNKL 355
Query: 371 VKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G+ PG ++G L + + + L ++LI+
Sbjct: 356 LARGLFNPGPELGRTLEKLARAVLLGEVNNRTDSLLDYAKELIS 399
>gi|167759626|ref|ZP_02431753.1| hypothetical protein CLOSCI_01984 [Clostridium scindens ATCC 35704]
gi|167662752|gb|EDS06882.1| hypothetical protein CLOSCI_01984 [Clostridium scindens ATCC 35704]
Length = 447
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 94/434 (21%), Positives = 170/434 (39%), Gaps = 48/434 (11%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76
I+ L + ++ VGG +RDS++ +D DI T+ +P+ +F K T I
Sbjct: 19 RIIGTLQEHGYEAYAVGGCIRDSILGREPEDWDITTSAMPEETKALFD----KTFDTGIQ 74
Query: 77 YGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQGK 134
+GTI ++ K+ F++TT R D + R+ K FTR+ + D LRRDFTINA+ ++
Sbjct: 75 HGTITVLLEKEGFEVTTYRIDGKYEDSRHPKEVTFTRNLREDLLRRDFTINAMAYNETDG 134
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
++D GGL DL I+ +G A R ED LRILR RF A G + A
Sbjct: 135 LVDIFGGLEDLEAGMIRCVGTAKERFKEDALRILRGVRFAAQLGFDIEEDTRQGMKELAW 194
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
I + + + + + Y G+ + + + ++
Sbjct: 195 TLQNISAERIQVELVKMITSKRP--EMLREAYELGMTRIVLPEFDQLMTTGQETPHHMYS 252
Query: 255 VFEWKI--------DSLLRFIVLISWQDKKS----------------------ILSMAKK 284
V E + D +LR +L+ K + ++ ++
Sbjct: 253 VGEHTLHAMKNIRADKILRLAMLLHDMGKPALKTVDEAGVAHFKKHALESERIAENVLRR 312
Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344
+ + C+ + + +++ G+++ +++ A +Q
Sbjct: 313 LKFDNDTIRKVTRLVRCHDLRMPATAKSVRRAMNQIGEELFPYYMEVRRADVLAQSMYQR 372
Query: 345 TCFIL----------QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
I Q++ D +TG D++ G+ PGKK+G L + I
Sbjct: 373 EEKIENLDQIEELYHQIVEDGDCVSLKDLAVTGRDLIASGMKPGKKIGEKLEELLKLVIE 432
Query: 395 SSFQLSQEDLHHLL 408
++E+L L
Sbjct: 433 DPKLNTKEELLKRL 446
>gi|294085752|ref|YP_003552512.1| putative poly(A) polymerase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292665327|gb|ADE40428.1| putative poly(A) polymerase [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 407
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 112/401 (27%), Positives = 190/401 (47%), Gaps = 17/401 (4%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ ++ I + K ++ IVGGAVRD L + V DID+A + +R +
Sbjct: 22 PFASQQLVMRIFDIAQKAGGEARIVGGAVRDWLAGMEVGDIDMAVNMPIERFADTLEQEG 81
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+VI T +S+GT+ ++ K +IT R D+ TDGR+AKV + DW D+ RRDFTINA+
Sbjct: 82 LRVIHTGLSHGTVTVVQDKTKIEITHTRLDIETDGRHAKVTHSPDWLEDARRRDFTINAI 141
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
Y D GK+ D + G +DL+ ++F+GDA R+ ED LR+LR+ RF +G ID+D L
Sbjct: 142 YMDAAGKIFDPLNGQDDLQAGILRFVGDADRRVQEDALRMLRYCRFLHRFGRGQIDADAL 201
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
A + + LS ER+ +E+ +L A A M + G+ ++D
Sbjct: 202 AAFRRNASLAQHLSGERVRTEMELILVADGAAKACTLMQDTGLATAAC------AIDF-- 253
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
V D+ L + I L+ + S R + + +
Sbjct: 254 NVGCLAPDGAPDRDNWLIGLASIMPPGTAISLAKRLRLSKIEARRLQAMD-RDIDPALPN 312
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
L+ + ++ + GD A++ F ++ +W P P+TG
Sbjct: 313 LAGDKWQQAAWFLGDGSA--------AIYAVKTRRSQAQFSTTRWDELQNWTAPECPVTG 364
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
D++ +G+ G G+IL++ +++W+ S F L++ L ++
Sbjct: 365 ADLLSHGVDNGPICGDILLNIQKQWVASGFTLTKPALLAMI 405
>gi|167765977|ref|ZP_02438030.1| hypothetical protein CLOSS21_00468 [Clostridium sp. SS2/1]
gi|167712334|gb|EDS22913.1| hypothetical protein CLOSS21_00468 [Clostridium sp. SS2/1]
gi|291558771|emb|CBL37571.1| uncharacterized domain HDIG [butyrate-producing bacterium SSC/2]
Length = 448
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 82/442 (18%), Positives = 157/442 (35%), Gaps = 51/442 (11%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ L + ++ IVGG VRDS++ + D DI T+ P V IF + T
Sbjct: 8 QAAKVIQTLEQHGFEAYIVGGCVRDSILGRTPGDWDITTSASPQEVKEIFDH----TVDT 63
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + +++TT R R +V FT+ + D LRRDFTINA+ +
Sbjct: 64 GIEHGTVTVLMNHEPYEVTTYRVDGKYEDHRRPKEVHFTKSLREDLLRRDFTINAMAYND 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ID G+ DL+N+ I+ +G+A R ED LRILR RF A G + +
Sbjct: 124 SEGIIDMYDGMTDLKNQIIRCVGEAKKRFDEDALRILRALRFQAQLGFQIEEKTEEAIKN 183
Query: 192 KAKKGLKILSSERIWS--------------EINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+AK I + KL K M
Sbjct: 184 QAKFLKDISAERIQVELEKLITSAHPEVLVNAYKLGVTKIIFPEFDIMMETPQNNPHH-- 241
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLR---------------FIVLISWQDKKSILSMA 282
+ + + + + + ++ LL + ++ +
Sbjct: 242 KYNVGIHTIEAMKQIKAEHIYRWTMLLHDVGKPTARVEGPDKDHFKMHPVIGEEMARKIL 301
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
++ + + + + + KK + ++ + + +++
Sbjct: 302 RRLKFDNQTIKQVTTLVRWHDRRFASIEEVNKKTVRRWVSQLTPELFTRLMEVQKADISA 361
Query: 343 QD--------------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
Q +++ + + G D++ G+P GK++G IL
Sbjct: 362 QSDYQRDKKEQVLQETKKLFEEIIEEKNCLSIKELKINGKDLMDMGVPQGKEIGQILSWL 421
Query: 389 KQEWINSSFQLSQEDLHHLLRK 410
+ + E L + +
Sbjct: 422 LDQVLEDPQLNECETLTRMAEE 443
>gi|320538282|ref|ZP_08038167.1| uncharacterized domain HDIG [Treponema phagedenis F0421]
gi|320144858|gb|EFW36589.1| uncharacterized domain HDIG [Treponema phagedenis F0421]
Length = 453
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 95/446 (21%), Positives = 172/446 (38%), Gaps = 48/446 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L I ++ + +VGG+VRD L+ + D D+AT P++V ++F IP
Sbjct: 10 PLLAEIAAVFTNAGFQVYLVGGSVRDYLLKKAAHDWDLATDASPEKVRKLFKH----TIP 65
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAK-VVFTRDWKADSLRRDFTINALYAD 130
T I +GTI I+ + K + TT R++ R+ V + R + D RRDFTINA
Sbjct: 66 TGIKHGTITILYKGKSIECTTFRTEADYTDSRHPDAVNYARSIEEDLSRRDFTINAFAVK 125
Query: 131 QQGKVIDY-VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
I G+ DLR + I+ +G+ R ED LR +R RF A +I+ + L A
Sbjct: 126 LPEGRITDLFNGMRDLRKKIIRTVGNPLERFSEDGLRPIRAIRFAAQLDF-SIEPETLKA 184
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------SL 243
+ +K +S ER E +K+L+ P AI M+ GI +E ++
Sbjct: 185 IPLSIAKIKTISVERFQDEFSKILQTDKPSVAIRLMHESGILQEFIPELSACAGVEQKGF 244
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS------------------------IL 279
+ + V + L+ + + D
Sbjct: 245 HRFDVFTHSLLVCDACPKEKLQVRLAGLFHDIGKPAMRKKTAHGDYTFYRHEAVSVELTE 304
Query: 280 SMAKKFSLPREIRYFLISFFNCNF--NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ ++ P +I + + ++ + +++ G + + + A +
Sbjct: 305 KILRRLRYPNKIIEQVCHLIGNHMFHYEENWTDAAVRRFIVRVGKEHIDDLFDLRQADTF 364
Query: 338 NNLTHQ--------DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
+ T I ++L + + G +++ GIP G +G IL
Sbjct: 365 GLAGQKVQPFHLAEFTAHIDKILKEDSALSIKNLAIGGKELIALGIPAGPMLGAILQELF 424
Query: 390 QEWINSSFQLSQEDLHHLLRKLIASS 415
Q ++ Q +++ L + L
Sbjct: 425 QTVLDDPAQNTKDSLLKIAEGLYRQK 450
>gi|254449556|ref|ZP_05062993.1| tRNA-nucleotidyltransferase 1 [Octadecabacter antarcticus 238]
gi|198263962|gb|EDY88232.1| tRNA-nucleotidyltransferase 1 [Octadecabacter antarcticus 238]
Length = 384
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 127/406 (31%), Positives = 190/406 (46%), Gaps = 26/406 (6%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ W + + LL + VGG VR++L+++ V D+D+AT PD VM++
Sbjct: 2 KLSANWLNSDASKAVTGLLVDAGYEVYFVGGCVRNALVDMPVADLDLATNARPDVVMQLA 61
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
R KVI T I +GT+ ++ + F+ITT R+D+ TDGR+A V F+ + D++RRDFT
Sbjct: 62 KDARLKVIATGIDHGTVTVVADHRPFEITTFRNDVETDGRHAVVAFSNTLQEDAVRRDFT 121
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-- 181
+NALY G VID VGG+ DL R ++FI DA RI EDYLRILRFFRF+A +G+ +
Sbjct: 122 MNALYCAPDGTVIDPVGGIPDLHARHVRFINDADLRIREDYLRILRFFRFYAWFGDPDQG 181
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
ID+DG A GL+ L+ ER+ +E+ K L A NP A+ M G +
Sbjct: 182 IDADGFAACAANLDGLEGLAKERVRTELLKTLLAPNPAPAMASMAMCGALGRLLAGADVS 241
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+L L + E L + + ++ + +
Sbjct: 242 ALAPLIHLQEK-----------LGRPAHLHT----RLAAINPGDVTSQLRLSKADTLEFT 286
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
LS+ + L Y G ++ I L + AL T D +
Sbjct: 287 RIRDGALSVIDAAPLGYNLGSELAIEALMLRAALSGGTFTKID-------MDAAQFGGAQ 339
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+P+T D++ G +G L + WI S F L + DL L
Sbjct: 340 NYPVTAKDLMPT--YAGPALGARLKQLETAWIASGFTLVKSDLLAL 383
>gi|73619752|sp|Q7SIB1|CCA_GEOSE RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|27573947|pdb|1MIY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme In Complex With Ctp
gi|27573948|pdb|1MIY|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme In Complex With Ctp
Length = 404
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 91/400 (22%), Positives = 164/400 (41%), Gaps = 14/400 (3%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + I+ L + + VGGAVRD L+ + D+DIAT+ LP+ VM IF K I
Sbjct: 7 EALGIIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFP----KTIDV 62
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+GT+ ++ + K +++TT + D R V F R + D RRDFT+NA+ D+
Sbjct: 63 GSKHGTVVVVHKGKAYEVTTFKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAIAMDE 122
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID GG +R R I+ +G+A R ED LR++R RF + G + D A +
Sbjct: 123 YGTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRMMRAVRFVSELGF-ALAPDTEQAIV 181
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L +S ER+ E+ KLL A+ + G+ + + +L+
Sbjct: 182 QNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAYLPGLAGKEKQLRLAAAYR 241
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ + L + + + LP ++ +
Sbjct: 242 WPWLAAREERWALLCHA----LGVQESRPFLRAWKLPNKVVDEAGAIL-TALADIPRPEA 296
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + G + ++ + A + + + + K + G DV+
Sbjct: 297 WTNEQLFSAGLERALSVETVRAAFTGAP-PGPWHEKLRRRFASLPIKTKGELAVNGKDVI 355
Query: 372 KY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++ G P G V L + +N + +E ++ L +
Sbjct: 356 EWVGKPAGPWVKEALDAIWRAVVNGEVENEKERIYAWLME 395
>gi|332686557|ref|YP_004456331.1| tRNA nucleotidyltransferase [Melissococcus plutonius ATCC 35311]
gi|332370566|dbj|BAK21522.1| tRNA nucleotidyltransferase [Melissococcus plutonius ATCC 35311]
Length = 410
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 88/399 (22%), Positives = 164/399 (41%), Gaps = 16/399 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ I+ + KG ++ VGG+VRD L+N + D+DIA++ P+ + ++F + I
Sbjct: 12 EATPIIKKIQKGGYEAYFVGGSVRDVLLNKPIHDVDIASSAYPEEIKQLFR----RTIDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ K ++ITT R++ R V F R D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLHGSKQYEITTFRTESTYQDFRRPDTVTFVRSLSEDLKRRDFTINALALDR 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+VID G++D+ N+ I+ +GD R ED LR++R RF + + + S
Sbjct: 128 SGQVIDQFDGISDIENKVIRAVGDPKARFHEDALRMMRALRFASQLDFQIEEKTLAGISA 187
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
K+ + LL + L +L S++
Sbjct: 188 FHFLLEKVSVERITIEFVKMLLGKNRKAGLYPFIQTECYQYCPCLKQAGEALLNFSELPN 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ E + +LL + ++ + + L K + L + + + L
Sbjct: 248 QQIAEESEAWTLLLHSLNLTKE---AALVFLKSWKLSNHLIQEVCQLSKGLNFR--LKKA 302
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
++ Y G + + K+ + H + Q + + + +TG D++
Sbjct: 303 FSIEMLYELGLEKALIVEKLLIYYH----KESQPELVKQQFAQLPIHNRKQLAITGKDLL 358
Query: 372 KY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
GK VG +L + + ++ + E+L +
Sbjct: 359 NITNGKSGKWVGELLSLIESQVLHGDLINTTEELISYAK 397
>gi|85373276|ref|YP_457338.1| tRNA nucleotidyltransferase [Erythrobacter litoralis HTCC2594]
gi|84786359|gb|ABC62541.1| tRNA nucleotidyltransferase [Erythrobacter litoralis HTCC2594]
Length = 395
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 129/413 (31%), Positives = 195/413 (47%), Gaps = 26/413 (6%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ W DL +++ +L VGGAVRD+L+ +V+D+D AT +LP+ VM
Sbjct: 5 LPSAPWTQRDDLASLVGVLGADN--LRWVGGAVRDTLLGDAVKDVDAATPLLPEDVMERL 62
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
+ + +PT I +GT+ I +ITTLR D+ TDGR A V F +W+ D+ RRDFT
Sbjct: 63 AAADIRTVPTGIDHGTVTAILPGGPVEITTLRKDVSTDGRRATVAFAGEWRDDAARRDFT 122
Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
INALYAD + I D+ GGL DL R ++FIGDA RI ED+LRILR+FRF A +G +
Sbjct: 123 INALYADPKTLAISDFFGGLEDLEARRVRFIGDARERIREDHLRILRYFRFQARFGAELD 182
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ + A+ K LS ER+ E+ LL +P I M G+ I + +
Sbjct: 183 EEAEEACAELAETL-KGLSRERVAMELLSLLALPDPAPTIARMRERGVLPVILSEAGKAE 241
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ +L +I +E + D LR + + S+A + L R R L+S
Sbjct: 242 VARLQALIASEARYSIAPDP-LRRLAALLPPVATLAESVAARLRLSRAQRDRLVSLA--- 297
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
++ + L Y G +L + A + + W P
Sbjct: 298 -RRQPEDETRARPLAYEEGLDNARDRLLLAGADP----------------APLQDWHVPQ 340
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
FPL G +V G+ G +V IL + W+ F + + LL + + +
Sbjct: 341 FPLKGGAIVARGVGAGPEVARILQGIEARWVEEGFPP-EARVAELLDEALNAR 392
>gi|327474160|gb|EGF19570.1| polyA polymerase family protein [Streptococcus sanguinis SK408]
Length = 399
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 101/400 (25%), Positives = 182/400 (45%), Gaps = 17/400 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF + +
Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFD----RTVDV 67
Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ +++TT R++ + R +KV F R + D RRDFTINAL D+
Sbjct: 68 GIEHGTVLVLENRREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G VID GL+DL+NR ++ +G A R ED LRI+R FRF A +++ D VA
Sbjct: 128 NGHVIDLFQGLDDLKNRILRAVGTAAERFNEDALRIMRGFRFQAALDF-DLEQDTFVAMK 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ERI+ E +KLL A + + E D++E S +L ++ E
Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEAL-LTSGAIEFLPDLKE-SRAKLERLFE 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ F + + L+ D +++ KK+ RE + + +
Sbjct: 245 LDSEFRFSASE-QAWAALLLALDVQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y I L+ L + I + + + K + G ++
Sbjct: 304 KRDCYDYD------IDLLQQAEELRKAQGLPVNFSAIQNLDASLTIHNKQEMVVNGGMLM 357
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++ PG K+G IL + ++ E ++ ++
Sbjct: 358 REFSFEPGPKLGQILKELEYAIVDGHLPNDLEAIYAYTKE 397
>gi|226227317|ref|YP_002761423.1| tRNA nucleotidyltransferase [Gemmatimonas aurantiaca T-27]
gi|226090508|dbj|BAH38953.1| tRNA nucleotidyltransferase [Gemmatimonas aurantiaca T-27]
Length = 446
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 97/434 (22%), Positives = 171/434 (39%), Gaps = 27/434 (6%)
Query: 2 VSIVQHKWFHDS-DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
+S + + +I + L + VGGAVRD+L+ ++ D D+AT P +V
Sbjct: 1 MSTLDERGLRVPGAVIELARTLQDAGFPTWCVGGAVRDALLGRALLDFDLATAATPAQVR 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
R+F + IP I +GT+ ++ + ++TT R D+ TDGR+A V F D R
Sbjct: 61 RLFR----RTIPVGIEFGTVGVLDRDGRMHEVTTFRHDVKTDGRHAVVEFGASLDEDLAR 116
Query: 120 RDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINA+ ++ D G DL ++ +G A R+ ED LR LR RF + +G
Sbjct: 117 RDFTINAIAFDPIARRLHDPFRGREDLLAGVVRAVGVAEERMREDRLRALRAIRFASRFG 176
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ + A ++ L + P A + G F + +
Sbjct: 177 FEIERETWVAIEASAAHLTRLSPERVKQEIDKTLEQVDAPSVAFARWRDAGAFAAVVPAL 236
Query: 239 QEISLDQLSQVIEAEQVFEWKIDS--LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
++ L+ + + LR L S + K + + +
Sbjct: 237 AQVPDGTLAAIDRLPRAVTPTRPLRRTLRLATLFSSLEGKEATRALRALRASNQEISVVG 296
Query: 297 SFFNCNFNQKT-----------LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345
+ + T S P ++++ G + A L++ A H+ T
Sbjct: 297 ALVDGWQRFGTALEAHLVAGSLPSDPALRRIAADVGRLRVNALLRLG-AAHWAGDTRIAP 355
Query: 346 CFILQVLSDIIH------WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399
+ Q+ + H + + GDD+ ++G+ G +G +L H + I +
Sbjct: 356 RLVRQLFRRLTHIAFHDPIEIADLAIDGDDLRQHGLRAGPALGRVLQHLRHLVIEDPSRN 415
Query: 400 SQEDLHHLLRKLIA 413
+E L L + IA
Sbjct: 416 QREILLALAGEWIA 429
>gi|187932836|ref|YP_001885873.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Clostridium botulinum B str. Eklund 17B]
gi|187720989|gb|ACD22210.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Clostridium botulinum B str. Eklund 17B]
Length = 432
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 103/427 (24%), Positives = 195/427 (45%), Gaps = 38/427 (8%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
D+ IL L ++ IVGG VRDS++N +D DI T P+ V+++F KVI T
Sbjct: 10 DVRFILDRLKNNGHEAYIVGGCVRDSILNNIPKDWDITTKARPEEVIKLFD----KVILT 65
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQ 131
+ +GT+ ++ + +++TT R D + R+ K F + K D RRDFTINA+ ++
Sbjct: 66 GVKHGTVTVLINSEGYEVTTYRMDGEYEDSRHPKKVNFVSNLKEDLARRDFTINAMAYNK 125
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+IDY G++DL+ + IK +G++ R ED LR+LR RF + +I ++ L +
Sbjct: 126 VDGLIDYFEGVSDLKKKVIKTVGNSEKRFSEDALRMLRAIRFSSQLNF-SISNETLNSIK 184
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI- 250
++ +K +S ERI E NK+L + I + G+ + IF ++ ++ ++ +
Sbjct: 185 NLRENIKNISKERIREEFNKILMSN--TKGIDILRETGLMEYIFPEIIKLYDFKIDNMYY 242
Query: 251 -------------EAEQVFEWKIDSLLRFIVLISWQDKK----SILSMAKKFSLPREIRY 293
E E K+ L ++ ++ +D + I K+F +
Sbjct: 243 NDNLYTHTIKATEEIENKLHLKLTMLFHNLLKMNNEDMEYTILQIKKFLKEFKYDNDTVN 302
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353
+ N + EIK++ L + LK+ + + + +L
Sbjct: 303 KVTDLTRYMHNSLN-TKLEIKQMLNLINLDLFEDLLKVKESEILSQNPLYKEERLSHLLY 361
Query: 354 DIIHWKKPLF----------PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED 403
+ K +F ++G D++ G+ GK +G +L + +N+ ++
Sbjct: 362 IRENLKDVIFNNECFNLKDLNISGKDLISLGLEKGKNIGEMLNELLELVMNNPGLNDKQV 421
Query: 404 LHHLLRK 410
L ++++
Sbjct: 422 LIDIVKE 428
>gi|315185643|gb|EFU19411.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Spirochaeta thermophila DSM 6578]
Length = 461
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 104/446 (23%), Positives = 176/446 (39%), Gaps = 51/446 (11%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L+ + L K IVGGA+R+ + +D D+AT P VM++F +VIPT
Sbjct: 17 LLLVCRTLRKHGFSCYIVGGALRNLALGTPPEDYDLATDAPPREVMKLFR----RVIPTG 72
Query: 75 ISYGTIKIICRKKYFDITTLR-SDLITDGRYAKV-VFTRDWKADSLRRDFTINALYADQ- 131
I +GT+ I+ R +++TT R +DGR+ FT + D RRDFTINA+ D
Sbjct: 73 IQHGTVTIVFRDHCYEVTTFRVETSYSDGRHPDEVRFTTSLEEDLSRRDFTINAMALDPL 132
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+ D G +D++ R IK IG+ R ED LRILR RF +I+ + A
Sbjct: 133 TGEFFDPFDGYSDIKRRLIKAIGNPEERFEEDALRILRAIRFATQLSF-SIEQETYTAIG 191
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---------IS 242
+ + L+ +S ERI E++K++EA P + M GI + ++++
Sbjct: 192 RHVEHLRRISWERIRDELSKIMEAVRPSRGFLQMEETGILSIVLPELEKCRGVLQSPPHR 251
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL----------------------S 280
D L ++ D LR+ L+ K L
Sbjct: 252 FDVLDHLLHTCDALPPS-DPPLRWAGLLHDIGKPETLSEDDLGGIHFHRHEHVSSHLAQR 310
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQ--KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
+ K+ P + + + + +++ + G + + +K+ +A
Sbjct: 311 ILKRLKFPNAVIQDVSHLIRHHMFDYTPDWTDAAVRRFLHRTGPEYLERLIKLRIADRIG 370
Query: 339 NLTHQD--------TCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCK 389
++L++ + G + + GIPPG +G L
Sbjct: 371 MTGETAPSHDLAGLKARAERLLAENTPLSIKDLAVDGHILQEDAGIPPGPWMGKTLRFLL 430
Query: 390 QEWINSSFQLSQEDLHHLLRKLIASS 415
+ Q ++ L L R
Sbjct: 431 DAVLEDPSQNTRARLTELARNFYTQR 456
>gi|294498154|ref|YP_003561854.1| CCA-adding enzyme (tRNA nucleotidyltransferase) [Bacillus
megaterium QM B1551]
gi|294348091|gb|ADE68420.1| CCA-adding enzyme (tRNA nucleotidyltransferase) [Bacillus
megaterium QM B1551]
Length = 397
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 94/408 (23%), Positives = 180/408 (44%), Gaps = 19/408 (4%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
++ + H + I+ L ++ VGGAVRD ++N ++ DIDIAT+ P++VM +F
Sbjct: 1 MKEPFIHP---LYIIEKLETAGYEAYFVGGAVRDLILNRTIGDIDIATSARPEQVMELFP 57
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDF 122
K I I +GT+ ++ + +++TT R + R + V F D RRDF
Sbjct: 58 ----KTIHVGIEHGTVVVVHENETYEVTTFRSEGEYDDFRRPSSVTFISSLIEDLQRRDF 113
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
TINA+ + +G++ID G DLRN+ I+ +G+A R ED LR++R RF + ++
Sbjct: 114 TINAMAMNAKGEIIDPFNGREDLRNQLIRTVGNAKERFHEDALRMMRAVRFVSQLAF-SL 172
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
A + + L+ +S ERI E K+L K P A+ +L +
Sbjct: 173 SDQTKRAIQQYGELLRHVSIERITVEFEKMLSGKRPSLALAL--VADTELYRYLPQLNVD 230
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ V + + ++ +V + K + K S + L S +
Sbjct: 231 PQKFRSVCAHDWMMLQRVSESWTLLVHLLDIQDKQAFFKSWKLSNKQIKDIQLQSIGLRD 290
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ S ++ Y G++ ++ +I L N + + +L + S++
Sbjct: 291 VLENGWSK----RIMYTIGEQASVSVNRILQLLRSNE--YMNEHELLYIYSELPIHSLKD 344
Query: 363 FPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ G D++ + G G V +L +++ + + ++ + ++
Sbjct: 345 LDINGQDLLVWTGKKGGPWVSQLLKEIEEKVLYNELMNTKSSIRKWVQ 392
>gi|281492122|ref|YP_003354102.1| tRNA nucleotidyltransferase [Lactococcus lactis subsp. lactis
KF147]
gi|281375805|gb|ADA65302.1| tRNA nucleotidyltransferase [Lactococcus lactis subsp. lactis
KF147]
Length = 398
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 95/405 (23%), Positives = 190/405 (46%), Gaps = 24/405 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+L + + ++ VGG+VRD L+ + D+DIAT+ P+ + IF I
Sbjct: 12 QAKPVLEKIIEHGFEAYFVGGSVRDILLGREIHDVDIATSAYPEEIKDIFP----YTIDV 67
Query: 74 SISYGTIKIICRK---KYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
I +GT+ ++ K ++++ITT R++ R V F RD + D RRDFT+NA
Sbjct: 68 GIEHGTVLVLAGKSEAEHYEITTFRTESKYTDYRRPDHVDFVRDLREDLKRRDFTVNAFA 127
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D G++ID GL DL+ R + +G A R ED LRI+R RF A + I++ +
Sbjct: 128 CDVNGQIIDLFDGLTDLKERRLTAVGSALERFNEDALRIMRAMRFAATLDFQ-IENKTFL 186
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A ++ L+ +S ERI+ E +KLL ++ N + + G +K + D+Q+ +L+++
Sbjct: 187 AMCESAHLLEKISVERIFIEFDKLLLGQDWRNGLTLLLKSGAYKYL-PDLQDSALEKVLT 245
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ + F+ + + S D + + +K+ + E F+ +
Sbjct: 246 DLSVDFHFQNSEQAWAALLTRFSNID---VKTFLRKWKVSNEFAKFVADLVSAYEL---- 298
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
Y +G + ++ ++ +A + + + + + K + G
Sbjct: 299 -DSWDLMSLYHFGLEKVLLVDELKVAYGL----KINREQAVTINNQLQIHDKSEIVIAGK 353
Query: 369 DVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
D++ ++ + PG ++G IL +++ + + + Q + ++K++
Sbjct: 354 DLMEEFSLEPGPELGKILKIIEEKIVKNELKNEQAAIFAEVKKML 398
>gi|295703505|ref|YP_003596580.1| tRNA nucleotidyltransferase [Bacillus megaterium DSM 319]
gi|294801164|gb|ADF38230.1| CCA-adding enzyme (tRNA nucleotidyltransferase) [Bacillus
megaterium DSM 319]
Length = 397
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 93/408 (22%), Positives = 180/408 (44%), Gaps = 19/408 (4%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
++ + H + ++ L ++ VGGAVRD ++N ++ DIDIAT+ P++VM +F
Sbjct: 1 MKEPFIHP---LYVIEKLETAGYEAYFVGGAVRDLILNRTIGDIDIATSARPEQVMELFP 57
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDF 122
K I I +GT+ ++ + +++TT R + R + V F D RRDF
Sbjct: 58 ----KTIHVGIEHGTVVVVHENETYEVTTFRSEGEYDDFRRPSSVTFISSLIEDLQRRDF 113
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
TINA+ + +G++ID G DLRN+ I+ +G+A R ED LR++R RF + ++
Sbjct: 114 TINAMAMNAKGEIIDPFNGREDLRNQLIRTVGNAKERFHEDALRMMRAVRFVSQLAF-SL 172
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
A + + L+ +S ERI E K+L K P A+ +L +
Sbjct: 173 SDQTKRAIQQYGELLRHVSIERITVEFEKMLSGKRPSLALAL--VADTELYRYLPQLNVD 230
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ V + + ++ +V + K + K S + L S +
Sbjct: 231 PQKFRSVCAHDWMMLQRVSESWTLLVHLLDIQDKQAFFKSWKLSNKQIKDIQLQSIGLRD 290
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ S ++ Y G++ ++ +I L N + + +L + S++
Sbjct: 291 VLENGWSK----RIMYTIGEQASVSVNRILQLLRSNE--YMNEHELLYIYSELPIHSLKD 344
Query: 363 FPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ G D++ + G G V +L +++ + + ++ + ++
Sbjct: 345 LDINGQDLLVWTGKKGGPWVSQLLKEIEEKVLYNELMNTKSSIRKWVQ 392
>gi|254520365|ref|ZP_05132421.1| polyA polymerase [Clostridium sp. 7_2_43FAA]
gi|226914114|gb|EEH99315.1| polyA polymerase [Clostridium sp. 7_2_43FAA]
Length = 448
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 93/438 (21%), Positives = 180/438 (41%), Gaps = 49/438 (11%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ I+ K ++ +VGG VRDS++N S +D DI T+ P+ + +F K IPT
Sbjct: 8 EVKFIIDTFYKNNFEAFMVGGCVRDSILNNSPKDYDITTSAKPEDTLSLFE----KTIPT 63
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ +++TT R + + + R + V F D + D RRDFTINAL ++
Sbjct: 64 GIKHGTVTVLINNNSYEVTTYRTEGNYLDNRRPSSVNFVSDIRDDLSRRDFTINALAYNK 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
++DY G++D++N I+ +GDA R ED LR+LR RF +I+ + A +
Sbjct: 124 SAGLVDYFNGISDIKNSIIRCVGDADKRFKEDALRMLRAVRFSCQLNF-DIEEETYNAIL 182
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
K + +S ERI E+ K+L + NP ++ + + G+ I ++ +
Sbjct: 183 NNNKLISNISFERIRDELCKILISDNPSKGLILLKDTGLLGAILPEINNLVNFTPKCNNH 242
Query: 252 AEQVFEWKIDSL------------------------------LRFIVLISWQDKKSILSM 281
VF+ ++ + + + + +
Sbjct: 243 NNNVFKHTLNVIDNTHNNLLLRLSALLHDVGKLNTLTHNENGFYYFPNHNIEGSLMTRKI 302
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
K + + + E+KKL G + + + A +
Sbjct: 303 LSKLRFDNNTINIVCKLIEHHLVLNVNYLPTKFEVKKLLNTIGKEYIYLLFDLQRADINS 362
Query: 339 NLTHQDTCFILQVLSDI--------IHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCK 389
+ + + ++ K ++G+ ++K + + PGK +G L
Sbjct: 363 LDNPKIFLAKVDYIDNLVSEILSNNEPLKIKDLNISGETLIKSFNLKPGKLIGYTLNFLL 422
Query: 390 QEWINSSFQLSQEDLHHL 407
+ + + ++E L L
Sbjct: 423 DKVLENPDLNTRESLLKL 440
>gi|331087228|ref|ZP_08336298.1| hypothetical protein HMPREF0987_02601 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330408914|gb|EGG88375.1| hypothetical protein HMPREF0987_02601 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 444
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 91/437 (20%), Positives = 172/437 (39%), Gaps = 48/437 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ L + ++ VGG VRDSL+ D DI T+ PD ++F+ + + T
Sbjct: 9 VNTIIQTLQEHGYEAYAVGGCVRDSLLGREPGDWDITTSASPDETKKLFA----RTVDTG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ K+ F++TT R D + R+ +FTR+ + D LRRDFTINA+ +
Sbjct: 65 IEHGTVTVLLGKEGFEVTTYRIDGKYEDSRHPTEVIFTRNLREDLLRRDFTINAMAYNDT 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D GG++DL+ + I+ +G+A R ED LRI+R RF A G +
Sbjct: 125 EGIVDIFGGMDDLKRKIIRCVGNARERFGEDALRIMRGVRFAAQLGFSLEKETKEAMTEL 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
A KI + + L+ I Y+ GI I + E+
Sbjct: 185 APTLEKISAERIQTELVKLLVSDSP--ELIREAYHLGITAVILPEFDEMMRTGQETKYHR 242
Query: 253 EQVFEW--------KIDSLLRFIVLISW----------------------QDKKSILSMA 282
V E D +LR +L+ + ++ +
Sbjct: 243 YDVGEHTVQAVCNVPPDKVLRLTMLLHDVAKPEMKTVDADGTAHFKGHDIRGEQKAKEIL 302
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
++ + + + + + ++K ++ L + A + +
Sbjct: 303 RRLKFDNDTIHKVTKLVRWHDYRMPAEKKNVRKAMSKISAELFPMYLLVKRADILAHSMY 362
Query: 343 QDTCFILQV------LSDI----IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
+ + + +I +TG D++ G+ PGK++G +L +
Sbjct: 363 RREEELENLSGLQKCYEEIVADHECVSLKQLAVTGTDLIGIGMKPGKQIGEVLNELLRIV 422
Query: 393 INSSFQLSQEDLHHLLR 409
+ ++E L ++
Sbjct: 423 LEYPEFNNKEHLLRFVQ 439
>gi|313890589|ref|ZP_07824217.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Streptococcus pseudoporcinus SPIN 20026]
gi|313121106|gb|EFR44217.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Streptococcus pseudoporcinus SPIN 20026]
Length = 403
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 95/398 (23%), Positives = 179/398 (44%), Gaps = 18/398 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF+ + +
Sbjct: 13 ALPILKKIKEAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKAIFT----RTVDLG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 69 IEHGTVLVLEGGSEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G +ID GL+DL++R ++ +G A R ED LRI+R FRF A ++ L A +
Sbjct: 129 GVIIDKFSGLDDLKSRRLRAVGKAQDRFEEDALRIMRGFRFAATLDF-TVEEKTLQAMAE 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIE 251
L +S ERI+ E +KLL + + + + L Q+ +L ++ ++
Sbjct: 188 QAHLLTKISVERIFIEFDKLLMSTHWRRGLELLVNAQAYQFLPDLAGQKNNLKKMMTDLQ 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
A F + ++ + + K+ L K + ++ ++S + Q+
Sbjct: 248 ATFNFTESAQAWASLMISLDISNSKAFLKKWKTSNDFQKKVDHIVSLYRLRQKQELDK-- 305
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y YG ++ + + L + D I + + K + G ++
Sbjct: 306 ---WSIYSYGKEIAL----LCEELRHARALEVDFSKIQALDEALAIHDKHEIVINGRYLM 358
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ GIP G ++G +L ++ + + +
Sbjct: 359 QELGIPAGPQLGKLLHQVEKAIVCGRLPNELPAIRKYI 396
>gi|71995920|ref|NP_001023976.1| hypothetical protein F55B12.4 [Caenorhabditis elegans]
gi|13548403|emb|CAB02125.2| C. elegans protein F55B12.4, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 436
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 114/417 (27%), Positives = 194/417 (46%), Gaps = 17/417 (4%)
Query: 2 VSIVQHKW--FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59
+ I + L+ + L K + I GGAVRD LMN+ D+D A+T P ++
Sbjct: 9 MKIDNEDFRTLFTPQLLKLRDLFAKRNYELRIAGGAVRDLLMNIRPADVDFASTATPTQM 68
Query: 60 MRIFSKTRYKV-IPTSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
+F + + ++ +GTI + F+ITTLR D++ DGR A+V +T DW+ D+
Sbjct: 69 KEMFEEDKIRMLHKRGEEHGTITCRIDDCENFEITTLRVDIVCDGRRAQVEYTTDWQLDA 128
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRD TIN+L+ D G V+DY GG+ D+ R I F+GDA RI EDYLRILR+FRFF
Sbjct: 129 NRRDLTINSLFLDLHGNVVDYFGGIRDIETRRIAFVGDARQRIQEDYLRILRYFRFFGRI 188
Query: 178 -GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ D + A ++ K G+ +S+ERIW+E+ K++ + + M ++
Sbjct: 189 SDCTEHEHDTIQAIVENKDGMAGISAERIWTELKKIVVGRMADEVLKAMIEQCELQKYLG 248
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+E +L++ V F ++ + L + + + K S + I
Sbjct: 249 LPKECNLERFHTVF---NRFSKTVEPMTMIACLCEDEHQIAEFHRITKLSNDERLLGEFI 305
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLY----GDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
+ + + G + +L+ L ++ + + +
Sbjct: 306 LSERQSAVENLKNDDWWIDRIVDLEVRPGHENQQDRLRQRLVQLAKSVLADE-----ERI 360
Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
I +++ P FP+TG D+++ G+ G V N+L + W S F S+ L +
Sbjct: 361 QMIENFEAPKFPITGRDLMEAGVRKGPHVRNVLYYLYNLWKESRFTESKYSLLERAK 417
>gi|254439635|ref|ZP_05053129.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Octadecabacter antarcticus 307]
gi|198255081|gb|EDY79395.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Octadecabacter antarcticus 307]
Length = 384
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 121/403 (30%), Positives = 185/403 (45%), Gaps = 26/403 (6%)
Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66
W + + +L + VGG VR++L+++ V D+D+AT PD VM++ +
Sbjct: 5 ANWLNTDASKAVTGMLVDAGYEVYFVGGCVRNALVDMHVADLDLATNARPDVVMKLATDA 64
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
KV+PT I +GT+ ++ + ++ITT R D+ TDGR A V F+ + D++RRDFT+NA
Sbjct: 65 GLKVVPTGIDHGTVTVVADHRPYEITTFRKDVETDGRRAVVAFSDGLEDDAVRRDFTMNA 124
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
LY G VID VGG++DL R ++FI DA RI EDYLRILRFFRF+A +G+ D
Sbjct: 125 LYCAPDGTVIDPVGGISDLHARHVRFINDADMRIREDYLRILRFFRFYAWFGDPEQGLDA 184
Query: 187 LVASIKAKKGL--KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A + L+ ER+ +EI K L A NP A+ M G+ + +L
Sbjct: 185 DGLAACAGNLDGLEGLAKERVQTEILKTLLAPNPAPAMASMAICGVLLRLLPGADVSALA 244
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
L + E + + L + + K + R
Sbjct: 245 PLVHLQE-----QLGRPAHLHTRLAAINPGDVTAQLRLSKADTTKFSR----------IR 289
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
S + L Y G + I L + +AL LT D + +P
Sbjct: 290 DGASSGIKAAPLGYALGADLAIEALMLRVALSGGILTKID-------IDAAQFGGAQTYP 342
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+ D++ G +G L + EWI S F L++ DL +
Sbjct: 343 VKAKDLMSA--YAGAALGARLKQLESEWIASGFTLTKPDLLAI 383
>gi|148284259|ref|YP_001248349.1| polyA polymerase [Orientia tsutsugamushi str. Boryong]
gi|146739698|emb|CAM79508.1| polyA polymerase [Orientia tsutsugamushi str. Boryong]
Length = 402
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 120/410 (29%), Positives = 213/410 (51%), Gaps = 10/410 (2%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M I F ++ +L +L + I+GG++R+ ++ V DIDIAT +LP++VM
Sbjct: 1 MTEIPICIIFPSQNIEKLLLMLATPIKSARIIGGSIRNIILGQPVNDIDIATPLLPEQVM 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ K T I +GT+ + +++ F+ITTLR D+ GR+AKV F+ D+ D+ RR
Sbjct: 61 DLLKLNNIKCYATGIKFGTVTAVIKREKFEITTLRQDVQCYGRHAKVEFSNDYFEDARRR 120
Query: 121 DFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINAL + + DY GL DL++R + FIGD+ RI ED LRILRFFRF ++Y
Sbjct: 121 DFTINALSYSFEQSLLYDYFNGLQDLKDRRVIFIGDSDTRIQEDVLRILRFFRFSSYYA- 179
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
++ID +G + K K L ILS ER+ E++K++ + N +V M I I L ++
Sbjct: 180 RSIDQEGYQSCAKHAKSLTILSKERVIQELSKIIISPNAYETLVKMAEINITYYIGLRLK 239
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
++L V + + ++ + VL+S D + + + + + ++
Sbjct: 240 -LNLPVFKNVTTIAKKKSILPNVIVLYSVLLSSNDVQDLKEILSNLRFSKAMIRKIVRLC 298
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
++ + + + ++L + + LAL ++ ++ Q + ++
Sbjct: 299 IFFSECQSKNALFLIRKYWLTRVDNIDD--YVNLALLLGCISDEEANMFKQQVYEL---- 352
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
P P++G D+ + G + + +L++ K WINS F L++++L LL+
Sbjct: 353 IPKLPVSGSDLKELGFKK-QAIQEVLLYLKHAWINSDFTLNKQELIDLLK 401
>gi|84514898|ref|ZP_01002261.1| polyA polymerase family protein [Loktanella vestfoldensis SKA53]
gi|84511057|gb|EAQ07511.1| polyA polymerase family protein [Loktanella vestfoldensis SKA53]
Length = 380
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 132/409 (32%), Positives = 182/409 (44%), Gaps = 31/409 (7%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
++ V W D + LL ++ VGG VR++L+ V D+D+ T PD V +
Sbjct: 1 MTRVTGAWLADPAAQLVCRLLTDAGYQAWFVGGCVRNALLGAPVADLDLTTDARPDGVTQ 60
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
I KVIPT I +GT+ II + F++TT R D+ TDGR A V F D+ RRD
Sbjct: 61 IAKAAGLKVIPTGIDHGTVTIIAKNTPFEVTTFRRDVATDGRRAVVAFADTMLEDARRRD 120
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FT+NALYA G V+D +GGL DL R ++FI DA RI EDYLRILRFFRF A YG
Sbjct: 121 FTMNALYAGPDGMVVDPLGGLPDLFARRVRFIEDAEQRIREDYLRILRFFRFHAWYGADG 180
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
ID D L A GL LS ER+ +E+ KLL A +P A+ M G+ +I
Sbjct: 181 IDPDALAACAANTDGLASLSRERVTAEMLKLLAAPDPAPAVASMAAAGVLGQILPGADAA 240
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L+ ++ E + R L LS +
Sbjct: 241 ---PLAVLVHIEAAVGLLPSPIRRLGALGGDPVGALRLSKRDALT--------------- 282
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ S + +L Y +G + I I A+ + L S
Sbjct: 283 --LEHMRSDLPVPELAYRHGAEAAINAAAITAAVLGHELDTNIDKNAQFAASQA------ 334
Query: 362 LFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
FPL D++ G +G + + WI S F L++ +L LR
Sbjct: 335 -FPLQAVDLMPDL---QGPALGQAMKKAEAAWIASGFTLTKTELLLRLR 379
>gi|306820496|ref|ZP_07454129.1| tRNA adenylyltransferase [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304551410|gb|EFM39368.1| tRNA adenylyltransferase [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 443
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 105/440 (23%), Positives = 183/440 (41%), Gaps = 39/440 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D ++S+L + IVGG +RD L+ DIDI T LP ++ +F + YKV+
Sbjct: 6 DKKARKVISMLESKGYNAYIVGGCLRDILLGRKSHDIDITTDALPKEIIDVFYDS-YKVV 64
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYA 129
T YGTI +I +ITT RS+ + D KAD RRDFT+NA+
Sbjct: 65 ETGAKYGTITVIIDGSPVEITTFRSEQDYIDGRRPENISFEKDIKADLSRRDFTLNAMAY 124
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + ID G DL ++ I+ +G+ R ED LR+LR RF A + I+ + A
Sbjct: 125 NDKDGFIDLFDGKEDLEDKIIRCVGNPRERFKEDKLRMLRAVRFAA-TFDFKIEDETFEA 183
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ + + +S ERI +E++K+L + P AI+ + G+ K I + E+
Sbjct: 184 IKEFSQDINEISIERINAELSKMLLVQRPSQAIILLKKTGLLKNILPVIDEMYGFSQQNP 243
Query: 250 IEAEQVFEWKIDSL--------LRFIVLISW----------------------QDKKSIL 279
+ +F +D L LR L
Sbjct: 244 YHEKDLFFHTMDVLDNVRDDIVLRLAALFHDSGKLYTKTVDENNIGHFYGHSELSFDIAR 303
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
K+ I + + + ++ I+KL L+G + + +++ A +
Sbjct: 304 DNLKRLRYSNNIIELVALLCKKHMIDTRNITKKGIRKLISLFGKENIYYLIELQRADSAS 363
Query: 339 NLTHQD---TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
D + +VL++ + + G+DV G GK++G+IL + + + +
Sbjct: 364 TTLGGDDTLKNKVDEVLAEEDVFSLKDMNIDGNDVKNLGYK-GKEIGDILRYLFDKVMEN 422
Query: 396 SFQLSQEDLHHLLRKLIASS 415
+ L ++++ IA
Sbjct: 423 PQFNEKTKLLEIIKREIADK 442
>gi|325663707|ref|ZP_08152111.1| hypothetical protein HMPREF0490_02852 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470200|gb|EGC73433.1| hypothetical protein HMPREF0490_02852 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 444
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 91/437 (20%), Positives = 172/437 (39%), Gaps = 48/437 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ L + ++ VGG VRDSL+ D DI T+ PD ++F+ + + T
Sbjct: 9 VNTIIQTLQEHGYEAYAVGGCVRDSLLGREPGDWDITTSASPDETKKLFA----RTVDTG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ K+ F++TT R D + R+ +FTR+ + D LRRDFTINA+ +
Sbjct: 65 IEHGTVTVLLGKEGFEVTTYRIDGKYEDSRHPTEVIFTRNLREDLLRRDFTINAMAYNDT 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D GG++DL+ + I+ +G+A R ED LRI+R RF A G +
Sbjct: 125 EGIVDIFGGMDDLKRKIIRCVGNARERFGEDALRIMRGVRFAAQLGFSLEKETKEAMAEL 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
A KI + + L+ I Y+ GI I + E+
Sbjct: 185 APTLEKISAERIQTELVKLLVSDSP--ELIREAYHLGITAVILPEFDEMMRTGQETKYHR 242
Query: 253 EQVFEW--------KIDSLLRFIVLISW----------------------QDKKSILSMA 282
V E D +LR +L+ + ++ +
Sbjct: 243 YDVGEHTVQAVCNVPPDKVLRLTMLLHDVAKPEMKTVDADGTAHFKGHDIRGEQKAKEIL 302
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
++ + + + + + ++K ++ L + A + +
Sbjct: 303 RRLKFDNDTIHKVTKLVRWHDYRMPAEKKNVRKAMSKISAELFPMYLLVKRADILAHSMY 362
Query: 343 QDTCFILQV------LSDI----IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
+ + + +I +TG D++ G+ PGK++G +L +
Sbjct: 363 RREEELENLSGLQKCYEEIVADHECVSLKQLAVTGTDLIGIGMKPGKQIGEVLNELLRIV 422
Query: 393 INSSFQLSQEDLHHLLR 409
+ ++E L ++
Sbjct: 423 LEYPEFNNKEHLLRFVQ 439
>gi|291236943|ref|XP_002738398.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like
[Saccoglossus kowalevskii]
Length = 418
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 117/408 (28%), Positives = 195/408 (47%), Gaps = 18/408 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + + + I GGAVRD L ++ QD+D+ATT P+ + +F K +
Sbjct: 24 LFTPQMNKLADIFKRYNYELRIAGGAVRDLLGHIMPQDVDLATTATPEEMKVMFEKEGVR 83
Query: 70 VIPT-SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
++ T +GTI K+ F++TTLR D +TDGR+A+V FT+DW+ D+ RRD TIN++
Sbjct: 84 MLNTKGEKHGTITARINDKENFEVTTLRIDKVTDGRHAEVEFTKDWELDAERRDLTINSM 143
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSD 185
+ G + D+ GG DL + ++F+G+A RI EDYLRILR+FRF+ + N +
Sbjct: 144 FLGLDGTLYDFFGGQQDLAEKKVEFVGNAVSRIQEDYLRILRYFRFYGRISDSDDNHNIH 203
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L A GL +S ERIW E+ K+L + + + MY + + I L V + ++D+
Sbjct: 204 TLKAIEDNAAGLADISGERIWMELKKILIGRLAPSTLRCMYQLRLPQYIGLPV-DGNVDE 262
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
V K ++L L + ++ IL K + R + + +
Sbjct: 263 FKFVWNRSLSMNPKSMTVL--CALFNKEEDVIILDKRVKL--SVQERKLGLFLVSSRQDV 318
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ K I + L + N +Q+ D W+ P FP+
Sbjct: 319 MDTDELKPFKDMVGQTKDKQIFPKVLELLKYKGN---------IQLYQDFQKWEIPKFPV 369
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+G D++ GI P KK G + ++ W NS + ++E L + +
Sbjct: 370 SGKDLINMGIQPNKKFGRYMDRLREVWKNSDYTCTKESLLQHAEQFKS 417
>gi|138895759|ref|YP_001126212.1| tRNA CCA-pyrophosphorylase [Geobacillus thermodenitrificans NG80-2]
gi|196248641|ref|ZP_03147341.1| Polynucleotide adenylyltransferase region [Geobacillus sp. G11MC16]
gi|166233855|sp|A4IQ63|CCA_GEOTN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|134267272|gb|ABO67467.1| Poly(A) polymerase [Geobacillus thermodenitrificans NG80-2]
gi|196211517|gb|EDY06276.1| Polynucleotide adenylyltransferase region [Geobacillus sp. G11MC16]
Length = 404
Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats.
Identities = 96/400 (24%), Positives = 164/400 (41%), Gaps = 14/400 (3%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ I+ LN+ ++ VGGAVRD L+ + D+DIAT+ LPD VM IF K I
Sbjct: 7 QALGIIRQLNRHGYEAYFVGGAVRDLLLGRPIGDVDIATSALPDEVMAIFP----KTIDV 62
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+GT+ ++ +++TT R D R V F R + D RRDFT+NA+ D+
Sbjct: 63 GSKHGTVVVVHEGTAYEVTTFRTDGDYEDHRRPESVTFVRSLEEDLKRRDFTMNAIAMDE 122
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID GG + R I+ +G+A R ED LR++R RF + G ++ D A I
Sbjct: 123 HGTIIDPFGGQEAIEKRLIRTVGEADARFREDALRMMRAVRFVSQLGF-SLAIDTKKAII 181
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L +S ER+ E+ KLL A+ + G+ + ++ + +
Sbjct: 182 ANAPLLAHISVERMTMEMEKLLAGPFAAEALPLLAETGLSTYLPGLAEKGEWLRRAAAYR 241
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ + L K + + LP ++ + +
Sbjct: 242 WPWLAAREERWALLCHA----LGVKESRPFLRAWKLPNKVIDEAGAILATLAAVPEPAAW 297
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ +L G K ++ + AL Q + + + + K + G V+
Sbjct: 298 -TNEQLFLAGLKRALSVEVVRAALTGKPYEPQHDE-LRRRFAALPIKTKGELAVNGKVVI 355
Query: 372 KY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ G P G V L + +N + +E ++ L +
Sbjct: 356 DWIGKPAGPWVKETLDAIWRAVVNGEVENEKERIYAWLME 395
>gi|307199467|gb|EFN80080.1| tRNA-nucleotidyltransferase 1, mitochondrial [Harpegnathos
saltator]
Length = 433
Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 112/403 (27%), Positives = 192/403 (47%), Gaps = 12/403 (2%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
S+L +++L K + + I GGAVRD LMN +D+D ATT PD++ +F K +
Sbjct: 26 LFTSELNILVNLFQKYDYELRIAGGAVRDILMNKYPKDLDFATTATPDQMKEMFEKEEIR 85
Query: 70 VIPT-SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
++ +GTI K+ F++TTLR D ITDGR+A+V FT+DWK D+ RRD TIN++
Sbjct: 86 ILNVKGEKHGTITARINDKENFEVTTLRIDNITDGRHAEVEFTKDWKLDACRRDLTINSM 145
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSD 185
+ D GK+ DY G +DL+N+ + F+G+ + RI EDYLRILR+FRF+ D
Sbjct: 146 FLDFNGKLYDYFYGYDDLKNKKVIFVGNVNTRICEDYLRILRYFRFYGKIMDSPDQHDEA 205
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ A GL+++S ERIWSE K+L K L + + + +++
Sbjct: 206 TIKAIKDNVNGLQLISGERIWSEWYKILTGKFALE-LTLKMLECGCGKYMGLPENPNIEN 264
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
V + + + + ++ +D++ ++ + + L R +
Sbjct: 265 FQIVCRRASSNDVALKPISMIVPML--KDEQEVMDVHGRLKLSNADRDLALFLVRYR--- 319
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ ++ Y V + + +++L + W P FP+
Sbjct: 320 -ECTHIPCERPLKPYQQLVFTQQTNRYDVYREYVKEILKYQGAMELLDEFEKWVIPKFPI 378
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G + +P K +G ++ K+ WIN F+ + +L +
Sbjct: 379 NGIMLKDL-VPHPKMIGKVITELKKIWINDDFKNTNSELIDHV 420
>gi|30024049|ref|NP_267715.2| tRNA CCA-pyrophosphorylase [Lactococcus lactis subsp. lactis
Il1403]
gi|73619785|sp|Q9CFC2|CCA_LACLA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|326407027|gb|ADZ64098.1| tRNA nucleotidyltransferase [Lactococcus lactis subsp. lactis CV56]
Length = 398
Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 96/405 (23%), Positives = 189/405 (46%), Gaps = 24/405 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+L + + ++ VGG+VRD L+ + D+DIAT+ P+ + IF I
Sbjct: 12 QAKPVLEKIIEHGFEAYFVGGSVRDILLGREIHDVDIATSAYPEEIKDIFP----YTIDV 67
Query: 74 SISYGTIKIICRK---KYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
I +GT+ ++ K ++++ITT R++ R V F RD + D RRDFTINA
Sbjct: 68 GIEHGTVLVLAGKSEAEHYEITTFRTESKYTDYRRPDHVDFVRDLREDLKRRDFTINAFA 127
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D G++ID GL DL+ R + +G A R ED LRI+R RF A + I++ +
Sbjct: 128 CDVNGQIIDLFDGLTDLKERRLTAVGSALERFNEDALRIMRAMRFAATLDFQ-IENKTFL 186
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A ++ L+ +S ERI+ E +KLL ++ N + + G +K + D+Q+ +L ++
Sbjct: 187 AMCESAHLLEKISVERIFIEFDKLLLGQDWRNGLTLLLKSGAYKYL-PDLQDSALKKVLT 245
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ + F+ + + S D + + +K+ + E F+ +
Sbjct: 246 DLSVDFHFQNSEQAWAALLTRFSNVD---VKTFLRKWKVSNEFAKFVADLVSAYEL---- 298
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
Y +G + ++ ++ +A + + + + + K + G
Sbjct: 299 -DSWDLMSLYHFGLEKVLLVDELKVAYGL----KINREQAVTINNQLQIHDKSEIVIAGK 353
Query: 369 DVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
D++ ++ + PG ++G IL +++ + + + Q + ++K++
Sbjct: 354 DLMEEFSLEPGPELGKILKIIEEKIVKNELKNEQAAIFAEVKKML 398
>gi|166033172|ref|ZP_02236001.1| hypothetical protein DORFOR_02894 [Dorea formicigenerans ATCC
27755]
gi|166027529|gb|EDR46286.1| hypothetical protein DORFOR_02894 [Dorea formicigenerans ATCC
27755]
Length = 443
Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 98/438 (22%), Positives = 165/438 (37%), Gaps = 48/438 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++ I+ L ++ VGG VRDS++ QD DI T+ +P +F K
Sbjct: 10 ENVKKIIETLQTHGYEAYAVGGCVRDSVLGRIPQDWDITTSAMPQETKTLFD----KTFD 65
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYAD 130
T I +GTI ++ + +++TT R D + R+ K FTR K D LRRDFTINA+ +
Sbjct: 66 TGIEHGTITVLLDHEGYEVTTYRIDGKYEDNRHPKEVTFTRSLKEDLLRRDFTINAMAYN 125
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++D GG+ DL+ I+ +GDA R ED LRILR RF A G + D +
Sbjct: 126 DADGLVDIFGGMEDLKKGVIRCVGDATARFSEDALRILRGIRFAAQLGFEIDDEARMAMK 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
A KI + + L+ + + + Y GI K+ + + +
Sbjct: 186 ELAPTLRKISAERIQVELVKTLVSDRP--DMLRTAYELGITKQFLPEFDLLMKTEQETPH 243
Query: 251 EAEQVFEWK--------IDSLLRFIVLISWQDKKSILSM--------------------- 281
V E D +LR +L+ K +M
Sbjct: 244 HMYNVGEHTLHALMRVRPDRILRITMLLHDMGKPEYKTMDETGQAHFKKHAIGSEHIAKE 303
Query: 282 -AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
K+ E + + + +++ G+ + +++ A
Sbjct: 304 ILKRLKFDNETIRTVARLVLYHDYRMPAEAKNVRRAMNKIGEDIFEYYMEVRRADVLAQS 363
Query: 341 THQDTCFIL----------QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390
T+ + ++ ++G D++ GI PGK++G IL +
Sbjct: 364 TYLRERKLKNLDDIEILYAKIKEAKQCVSLKELAVSGSDLIAIGIKPGKEIGEILNRLLE 423
Query: 391 EWINSSFQLSQEDLHHLL 408
I +E L
Sbjct: 424 MVIEDPELNQKEILLKKA 441
>gi|225571166|ref|ZP_03780164.1| hypothetical protein CLOHYLEM_07254 [Clostridium hylemonae DSM
15053]
gi|225159997|gb|EEG72616.1| hypothetical protein CLOHYLEM_07254 [Clostridium hylemonae DSM
15053]
Length = 457
Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 93/436 (21%), Positives = 170/436 (38%), Gaps = 48/436 (11%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +I++ L ++ VGG VRDS++ + +D DI T+ +P++ +F + T
Sbjct: 25 VNDIITTLQAHGFEAYAVGGCVRDSVLGRTPEDWDITTSAMPEQTKSLFP----RTFDTG 80
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + F++TT R D + R+ K FTR K D LRRDFTINA+ +++
Sbjct: 81 IEHGTVTVLLEHEGFEVTTYRIDGKYEDNRHPKEVTFTRSLKEDLLRRDFTINAMAYNEK 140
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D GG+ DL + I+ +GDA R ED LRILR RF A G D
Sbjct: 141 DGLTDIFGGMKDLESGLIRCVGDAKERFSEDALRILRGVRFAAQLGFDIEDETKEGMRKL 200
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
A I + + + + ++ Y GI + + + +
Sbjct: 201 AYTLKNISAERIQTELVKMVTSKRP--QLLMTAYELGITRVFLPEFDRMMETEQETPHHM 258
Query: 253 EQVFEWK--------IDSLLRFIVLISWQDKKSI----------------------LSMA 282
V E D +LR +L+ K + S+
Sbjct: 259 YNVGEHTLHAMNNVRPDKILRLTMLLHDTGKPAYKTVDANGVAHFKKHALESENIARSVL 318
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
++ + + + + + I++ + G+++ +++ A +
Sbjct: 319 RRLKFDNDTLHKVSKLVYYHDYRMPARAKNIRRAMNMIGEELFPYYMEVRKADVLAQSEY 378
Query: 343 QDTCFILQV------LSDII----HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
I + +I +TG D+++ G+ PGK++G L
Sbjct: 379 LREEKIQNLSEIESIYKEIKAAGQCVSLKELAVTGKDLIEAGMAPGKEIGEKLSELLALV 438
Query: 393 INSSFQLSQEDLHHLL 408
I ++E L L
Sbjct: 439 IEEPEMNTKEKLLDRL 454
>gi|242010004|ref|XP_002425767.1| tRNA-nucleotidyltransferase 1, putative [Pediculus humanus
corporis]
gi|212509693|gb|EEB13029.1| tRNA-nucleotidyltransferase 1, putative [Pediculus humanus
corporis]
Length = 469
Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 118/407 (28%), Positives = 194/407 (47%), Gaps = 28/407 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
S++ + ++ + + IVGGAVRD L+ +D+D ATT PD + ++F + ++I
Sbjct: 72 SSEVQTLKNMFIENNHEIRIVGGAVRDLLLGKKPEDLDFATTATPDEMKKMFESNKVRMI 131
Query: 72 P-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI + +K ++ITTLR D ITDGR+A+V FT++W D+ RRD TINA+Y D
Sbjct: 132 NMNGERHGTITVRLNEKNYEITTLRIDTITDGRHAEVEFTKNWFCDANRRDLTINAMYLD 191
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDGLV 188
G + DY+ F+G+A RI EDYLRILR+FRF+ N + + L
Sbjct: 192 FNGTLYDYLTS---------TFVGEASLRIQEDYLRILRYFRFYGKIAKEPDNHEEEILQ 242
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ + KGL +S ERIW+EI+K+L K + + + I +L +L +
Sbjct: 243 SIKENAKGLVTISGERIWTEISKILMGKFVYEILSKIQMLNVGSYIGFP-SSCNLSELKR 301
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
V E + FE+ + F L Q++ + + K S + + I N N K
Sbjct: 302 VTENLKKFEFSAKPMTIFSSLFHTQEEITDFYLKIKASTFDKQLGYFIIL---NRNDKKE 358
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
Y+ ++ L L L N +++ ++ +W+ P FPL G+
Sbjct: 359 QESIKVYQRYILTEQNSRQALTFSLELLKYNGN-------VELHKELENWRIPKFPLNGN 411
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ G+ G +L K+ WI F + L + +++
Sbjct: 412 MLKSKGVN-----GKVLSELKEIWIKEDFNIDNNKLLEFVPEIMNEK 453
>gi|332523718|ref|ZP_08399970.1| putative tRNA adenylyltransferase [Streptococcus porcinus str.
Jelinkova 176]
gi|332314982|gb|EGJ27967.1| putative tRNA adenylyltransferase [Streptococcus porcinus str.
Jelinkova 176]
Length = 403
Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 96/402 (23%), Positives = 180/402 (44%), Gaps = 19/402 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF+ + +
Sbjct: 13 ALPILKKIKEAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKAIFT----RTVDLG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 69 IEHGTVLVLEGGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G +ID GL+DL+ R ++ +G A R ED LRI+R FRF A ++ A +
Sbjct: 129 GDIIDKFNGLDDLKARRLRAVGKAQDRFEEDALRIMRGFRFAATLDF-TVEETTFCAMTE 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIE 251
L +S ERI+ E +KLL + + + + L Q+ +L ++ ++
Sbjct: 188 QAHLLTKISVERIFIEFDKLLMSNHWRCGLELLVNAQAYQFLPDLAGQKTNLQKMMTNLQ 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
A F + I+ + + K+ L K + ++ +IS + Q+
Sbjct: 248 ATFNFTESAQAWASLIISLDISNSKAFLKKWKTSNEFQKKVDHIISLYRLRQKQELDK-- 305
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y YG ++ I ++ A + I + + K + G ++
Sbjct: 306 ---WSLYSYGKEIAILCEELRQAQAL----EVNFSRIQDLDEALAIHDKREIVVNGRYLM 358
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL-HHLLRKL 411
+ G+ G ++G L H ++ + + +++ +L
Sbjct: 359 QELGMSAGPELGKTLNHIEEAIVRGQLINDLPAIRDYIIEEL 400
>gi|19745936|ref|NP_607072.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS8232]
gi|50914037|ref|YP_060009.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS10394]
gi|139473967|ref|YP_001128683.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes str. Manfredo]
gi|73619872|sp|Q5XCN7|CCA_STRP6 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|73619877|sp|Q8P1E3|CCA_STRP8 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|166233885|sp|A2RF34|CCA_STRPG RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|19748093|gb|AAL97571.1| putative poly(A) polymerase [Streptococcus pyogenes MGAS8232]
gi|50903111|gb|AAT86826.1| poly(A) polymerase [Streptococcus pyogenes MGAS10394]
gi|134272214|emb|CAM30461.1| CCA-adding enzyme [Streptococcus pyogenes str. Manfredo]
Length = 402
Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 102/403 (25%), Positives = 182/403 (45%), Gaps = 18/403 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF+ + +
Sbjct: 13 ALPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFN----RTVDVG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL DL+ + ++ +G A R ED LRI+R FRF A +I++ A
Sbjct: 129 GQVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASLDF-DIEAATFEAMRS 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQLSQVIE 251
L+ +S ER ++E +KLL A + I M + L QE L+ L ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIVSLK 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + ++ ++ +D KS L K + + LI+ + + +
Sbjct: 248 DNFTFSDHHQAWAYVMISLAIEDPKSFLKAWKTSNDFQRYVTKLIALYRIRQERSFEKL- 306
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y YG ++ + L D I + ++ K L G ++
Sbjct: 307 ----DIYQYGKEMA----SLVEDLRKAQSLSVDMDRINTLDQALVIHDKHDIVLNGSHLI 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
K +G+ PG ++G +L + + + +R+ +A
Sbjct: 359 KDFGMKPGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELA 401
>gi|114328297|ref|YP_745454.1| poly(A) polymerase [Granulibacter bethesdensis CGDNIH1]
gi|114316471|gb|ABI62531.1| poly(A) polymerase [Granulibacter bethesdensis CGDNIH1]
Length = 413
Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 104/408 (25%), Positives = 187/408 (45%), Gaps = 21/408 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
W D L ++L++L ++ VGG VRD+L V DID+A + P++ ++ +
Sbjct: 12 WLDDPALQDVLAVLP----QARPVGGCVRDALAGRPVADIDLAVPMPPEQTLQRLEQAGL 67
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
IPT +S+GT+ + R ++F+IT+LR DL TDGR+A+V FT DW+ D+ RRDFTINA+
Sbjct: 68 HSIPTGLSHGTVTAVSRGQHFEITSLRRDLATDGRHAEVSFTDDWQEDAARRDFTINAMS 127
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
G + DY GGL+DLR ++F+G A R+ ED LR LRFFRF A YG ++
Sbjct: 128 LSPDGTLHDYFGGLDDLRAGRVRFVGQAGRRVAEDRLRALRFFRFQARYGRWEQGTEPDA 187
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A+++A + ++ + L + + + + D
Sbjct: 188 AAMQAITAMAGELTQLSAERVWSELRRILTGPHLAAILAAMEQTGVLPVLFPAGYDPAPL 247
Query: 249 VIEAEQVF---EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
V +++ R +L+ ++ L+ + S R
Sbjct: 248 VEAVANGMPGEGLAEEAIPRLALLVGAKEPPRALAERLRLSGQEAGRLTTC-------LD 300
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
++ + + + + + + L + + ++L+ + +P FPL
Sbjct: 301 GSVPVWDGAADMVSLRRLLADDPAQALIDRAWVMLRDERAAHLTRLLTPL---SRPNFPL 357
Query: 366 TGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQED---LHHLLR 409
G D++ G+ PG +G++L + EW+ + +E+ L ++
Sbjct: 358 AGRDLLAAGLAVPGPALGHLLDTLRTEWLRRGCREGEEEKAALLAWVK 405
>gi|240138023|ref|YP_002962495.1| putative nucleotidyl transferase/polymerase [Methylobacterium
extorquens AM1]
gi|240007992|gb|ACS39218.1| putative nucleotidyl transferase/polymerase [Methylobacterium
extorquens AM1]
Length = 424
Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats.
Identities = 121/399 (30%), Positives = 193/399 (48%), Gaps = 7/399 (1%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + L+ L+ +++ +VGG VRD+L+ V DID+ATT+ P+ VM K
Sbjct: 23 LARAGVQACLAALDAPGEETRLVGGCVRDALLGTIVADIDLATTLRPEAVMACARTAGIK 82
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ T I +GT+ ++ + ++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL
Sbjct: 83 AVGTGIEHGTVTLVVGGEPHEVTTLREDVETDGRHAVVRFGRDFARDAERRDFTINALSL 142
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D +G++ D GG+ DL ++FIGDA R+ ED LR+LRFFRF A YG D++GL A
Sbjct: 143 DAEGRLHDTTGGVADLAAGRVRFIGDAATRLREDALRLLRFFRFHARYGSGAPDAEGLAA 202
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
SI A+ L LS ER+ +E KLL A ++A+ + G+ I V E+ +LS+
Sbjct: 203 SIAARDSLDRLSRERVRAEFLKLLLAPRAVDAVAILSETGLLPRILGGVGELG--RLSR- 259
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
A + + + + +D + + + ++ +
Sbjct: 260 -CATTELGVDATARFAALAVRTSEDADRLQASLRLSRAEHARLTGYAIALAALHDRPVIE 318
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ L YG + L +T + ++ +P+ P+TG D
Sbjct: 319 ADAVPALVATYGAGPLRELLIALDGEPRPRVTPAARAMLDRME---AAGTRPVLPVTGAD 375
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+V G+ PG+ VG L + W+ S E L+
Sbjct: 376 LVARGVAPGRAVGAGLRAARDLWLASGCPDDAEARERLI 414
>gi|331270840|ref|YP_004397277.1| PolyA polymerase family protein [Clostridium botulinum BKT015925]
gi|329127558|gb|AEB77501.1| PolyA polymerase family protein [Clostridium botulinum BKT015925]
Length = 440
Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats.
Identities = 101/434 (23%), Positives = 176/434 (40%), Gaps = 47/434 (10%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
I+ L + ++ IVGG VRDSL+ + D DI T+ LP++V+ IF YK+IPT + +
Sbjct: 12 IIHKLQEFNYEAYIVGGCVRDSLLKKTPNDWDITTSALPNKVVDIFQNLGYKIIPTGLKH 71
Query: 78 GTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQGKV 135
GT+ I+ +++++TT R D + R+ K FTR+ K D RRDFTIN++ + + +
Sbjct: 72 GTVTIVINNEHYEVTTYRIDGEYEDNRHPKKVEFTRNLKEDLSRRDFTINSMAYNDKDGL 131
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
+DY NDL + +K +GD R ED LRILR +RF A G D
Sbjct: 132 VDYFNSKNDLESGIVKSVGDPMKRFSEDALRILRAYRFAAQLGFVIEDETLSATMQVKDN 191
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
I + + G+ + I ++ + + + + V
Sbjct: 192 LKSISIERIRDEI---DKMLLANSSIFFELSKFGVLEVILPELYQCFNVEQNNPYHVKNV 248
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFS----------------------------- 286
F I++ L + + + + K
Sbjct: 249 FNHIINATLNIEPKLHLKLTMLLHDICKPQCKTTDEKGIDHFYNHAELSSNKSKEILKRM 308
Query: 287 -LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA------LHYNN 339
+ + + + S I+KL L G+ LK+ A L Y +
Sbjct: 309 KYDNNTIDKVSTLVKYHDREIG-SNKSIRKLLSLIGEDNFRDLLKVKEADIKAQNLKYYD 367
Query: 340 LTHQDTCFILQVLSDI----IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
H I L+DI + + G D+++ G GK++G+IL ++ + +
Sbjct: 368 ERHNKLIEIEHKLNDIISKNQCFSLKDLKVNGRDLIELGYT-GKEIGHILNDLLEKVLEN 426
Query: 396 SFQLSQEDLHHLLR 409
+++ L ++R
Sbjct: 427 PDLNNKDTLIGMIR 440
>gi|282890317|ref|ZP_06298845.1| hypothetical protein pah_c016o016 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499699|gb|EFB41990.1| hypothetical protein pah_c016o016 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 412
Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats.
Identities = 87/404 (21%), Positives = 168/404 (41%), Gaps = 12/404 (2%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
I+ L K + GG VRD LM DIDIAT P++++ +F T
Sbjct: 7 HATEIVKKLVKAGYIAYFAGGWVRDYLMGHPSSDIDIATNAPPEKILDLFPHTLL----V 62
Query: 74 SISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYA-DQ 131
+++G + ++ ++I+T R D DGR + + D+ RRDFTIN ++
Sbjct: 63 GLAFGVVIVLIEGHQYEISTFRQDFDYLDGRKPSKIQLSTPQEDAKRRDFTINGMFYDPI 122
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ + D+V G DL I+ IG+ R LED LR++R RF + +G
Sbjct: 123 EDTIFDFVRGAVDLDLGIIRTIGNPQERFLEDRLRMVRAIRFASRFGFIIDTDTQEAIIE 182
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
A ++ ERIW E K+ + +A++ ++ + EIF + L+ + ++
Sbjct: 183 NASTLFPSVAMERIWQEFCKMSNYPSFDHALIELHRLQLLAEIFPTLANTHLNAIKHRVK 242
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLSI 310
+ ++ + ++L L ++L + K+ + +++ + N +
Sbjct: 243 SFHLYPHETPTILYLAQLFPDLSLTTLLDIFKELKTSKRDCHYVEVYRKGQNLMNSANAG 302
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD-----IIHWKKPLFPL 365
+ + Y L I +A D + L I + +
Sbjct: 303 DNWVEWTHYYALPEAQICLDIMIANAATEEERTDLANFHKNLRKKLAKHIERIQHKNPLI 362
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ ++ GI P K++G +L ++ I ++ + +Q+ L L +
Sbjct: 363 SSAFLMDQGILPSKQMGLLLKEAEKIVILNNLENAQDALSSLKQ 406
>gi|56808914|ref|ZP_00366623.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase
[Streptococcus pyogenes M49 591]
Length = 402
Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats.
Identities = 103/403 (25%), Positives = 182/403 (45%), Gaps = 18/403 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF+ + +
Sbjct: 13 ALPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFN----RTVDVG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL DL+ + ++ +G A R ED LRI+R FRF A +I++ A
Sbjct: 129 GQVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASLDF-DIEATTFEAMRS 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQLSQVIE 251
L+ +S ER ++E +KLL A + I M + L QE L+ L ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIVSLK 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + ++ ++ +D KS L K + + LI+ + + +
Sbjct: 248 DNFTFSDHHQAWTYVMISLAIEDPKSFLKAWKTSNDFQRYVTKLIALYRIRQERSFEKL- 306
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y YG K+ + L D I + ++ K L G ++
Sbjct: 307 ----DIYQYGKKMA----SLVEDLRKAQSLSVDMDHINTLDQALVIHDKHDIVLNGSHLI 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
K +G+ PG ++G +L + + + +R+ +A
Sbjct: 359 KDFGMKPGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELA 401
>gi|21910123|ref|NP_664391.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS315]
gi|28896178|ref|NP_802528.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes SSI-1]
gi|71903318|ref|YP_280121.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS6180]
gi|94988359|ref|YP_596460.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS9429]
gi|94992241|ref|YP_600340.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS2096]
gi|73619870|sp|Q8K7W5|CCA_STRP3 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|123640057|sp|Q48U40|CCA_STRPM RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|166233881|sp|Q1JCB2|CCA_STRPB RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|166233882|sp|Q1JM96|CCA_STRPC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|21904315|gb|AAM79194.1| putative poly(A) polymerase [Streptococcus pyogenes MGAS315]
gi|28811429|dbj|BAC64361.1| putative poly(A) polymerase [Streptococcus pyogenes SSI-1]
gi|71802413|gb|AAX71766.1| poly(A) polymerase [Streptococcus pyogenes MGAS6180]
gi|94541867|gb|ABF31916.1| tRNA nucleotidyltransferase [Streptococcus pyogenes MGAS9429]
gi|94545749|gb|ABF35796.1| poly(A) polymerase / tRNA nucleotidyltransferase [Streptococcus
pyogenes MGAS2096]
Length = 402
Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats.
Identities = 102/403 (25%), Positives = 180/403 (44%), Gaps = 18/403 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF+ + +
Sbjct: 13 ALPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFN----RTVDVG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL DL + ++ +G A R ED LRI+R FRF A +I++ A
Sbjct: 129 GQVIDKFRGLIDLEQKRLRAVGKAEERFEEDALRIMRGFRFAASLDF-DIEAATFEAMRS 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQLSQVIE 251
L+ +S ER ++E +KLL A + I M + L QE L+ L ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIVSLK 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + ++ ++ +D KS L K + + LI+ + + +
Sbjct: 248 DNFTFSDHHQAWAYVMISLAIEDPKSFLKAWKTSNDFQRYVTKLIALYRIRQERSFEKL- 306
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y YG ++ + L D I + + K L G ++
Sbjct: 307 ----DIYQYGKEMA----SLVEGLRKAQSLSVDMDHIEALDQALAIHNKYDIVLNGSHLI 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
K +G+ PG ++G +L + + + +R+ +A
Sbjct: 359 KDFGMKPGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELA 401
>gi|210613802|ref|ZP_03289916.1| hypothetical protein CLONEX_02127 [Clostridium nexile DSM 1787]
gi|210151011|gb|EEA82019.1| hypothetical protein CLONEX_02127 [Clostridium nexile DSM 1787]
Length = 465
Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats.
Identities = 93/441 (21%), Positives = 172/441 (39%), Gaps = 44/441 (9%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I++ L + ++ VGG VRDS++ D DI T+ P+ +F + T
Sbjct: 27 VNFIINKLKENGYEAYAVGGCVRDSVLGRVPDDWDITTSATPNETKALFR----RTFDTG 82
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
I +GTI ++ K+ F++TT R D + R+ + VFTR K D LRRDFTINA+ +++
Sbjct: 83 IEHGTITVLVDKEAFEVTTYRVDGEYEDSRHPREVVFTRSLKEDLLRRDFTINAMAYNEE 142
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D GG+ DL+ + I+ +G+A R ED LRILR RF A G + D
Sbjct: 143 EGLVDIFGGIEDLQRKMIRCVGNARERFGEDALRILRAVRFAAQLGFRIEDETMEGIRKL 202
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAI------------VHMYNGGIFKEIFLDVQE 240
A I + + L+ L A+ +E +
Sbjct: 203 APTLANISAERIQVELVKMLVSPNPGLLALSYELGITKVVLPEFDEMMRTGQETPHHMYS 262
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIV----------------LISWQDKKSILSMAKK 284
+ + L V + ++ LL + + + + + K+
Sbjct: 263 VGMHTLKAVEQVRADKVLRLTMLLHDVAKPQMKTVDADGVAHFKMHDVKGAEVAKRILKR 322
Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344
+ + + + +++ G+++ L+I A +
Sbjct: 323 LKFDNDTLGKVTKLVQYHDYRMPAQPKNVRRAMNKIGEELFPYYLEIRKADTMAQSEYMR 382
Query: 345 TCFI----------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
+ ++L + ++G D++ G+ PGK++G +L + I
Sbjct: 383 EEKLSNIAGIERCYKEILKKKECVSLKMLAVSGSDLIADGMQPGKQIGAVLQALLELVIE 442
Query: 395 SSFQLSQEDLHHLLRKLIASS 415
++E L RKL +
Sbjct: 443 QPEYNTKEILLEQSRKLRKET 463
>gi|312127262|ref|YP_003992136.1| polynucleotide adenylyltransferase region [Caldicellulosiruptor
hydrothermalis 108]
gi|311777281|gb|ADQ06767.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor
hydrothermalis 108]
Length = 394
Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats.
Identities = 101/402 (25%), Positives = 174/402 (43%), Gaps = 18/402 (4%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
+ ++ LN+ K+ +VGG VRD L+ QD DIAT P+ V+ +F K IPT I
Sbjct: 9 MKVIRTLNQHGFKAYLVGGCVRDYLLGKEPQDFDIATDAKPEDVIHLFE----KTIPTGI 64
Query: 76 SYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+GT+ +I ++TT R + R+ KV F D RRDFTINA+
Sbjct: 65 KHGTVTVIINGVKIEVTTFRIEKEYKNHRWPKVEFINSLFEDLRRRDFTINAMAYHPDEG 124
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
+IDY GG+ DL+N+ ++ +G+ H R ED LRILR RF I+++ A K
Sbjct: 125 LIDYFGGIEDLKNKIVRCVGNPHERFFEDALRILRCIRFVTQLSFV-IENETFEALKSLK 183
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
LK +S ERI E++K LE+KN + +Y G+ I + +I L + + E
Sbjct: 184 DLLKKISKERINIELSKTLESKNSSYGLKLLYESGVGSIIISEYSQIYLY----LSQVEF 239
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
F + F + +D I + + ++ N
Sbjct: 240 DFIPTKFKVPAFFACL--KDNTLIEKLMRDLKFEKKKINAAAKLCNYL-----TMECSQD 292
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374
KL + +I + H+ + + K L G+D++ G
Sbjct: 293 KLVKKIFFEEEKEAEEILTTISILKSDHRILQIFNDLKRENKLIHKKDVQLRGEDLLILG 352
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ G+ +G +L + + + + +++++ + + + +
Sbjct: 353 LK-GEMIGKVLKSVYEYILENPEKNNKDEILNYVNLYLQQGK 393
>gi|306827536|ref|ZP_07460818.1| polyA polymerase [Streptococcus pyogenes ATCC 10782]
gi|304430243|gb|EFM33270.1| polyA polymerase [Streptococcus pyogenes ATCC 10782]
Length = 402
Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats.
Identities = 102/403 (25%), Positives = 181/403 (44%), Gaps = 18/403 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF+ + +
Sbjct: 13 ALPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFN----RTVDVG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL DL+ + ++ +G A R ED LRI+R FRF A +I++ A
Sbjct: 129 GQVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASLDF-DIEAATFEAMRS 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQLSQVIE 251
L+ +S ER ++E +KLL A + I M + L QE L+ L ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNYLIVSLK 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + ++ ++ +D KS L K + + LI+ + + +
Sbjct: 248 DNFTFSDYHQAWAYVMISLAIEDPKSFLKAWKTSNDFQRYVTKLIALYRIRQERSFEKL- 306
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y YG ++ + L D I + + K L G ++
Sbjct: 307 ----DIYQYGKEMA----SLVEGLRKAQSLSVDMDHIEALDQALAIHDKHDIVLNGSHLI 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
K +G+ PG ++G +L + + + +R+ +A
Sbjct: 359 KDFGMKPGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELA 401
>gi|197302364|ref|ZP_03167421.1| hypothetical protein RUMLAC_01093 [Ruminococcus lactaris ATCC
29176]
gi|197298543|gb|EDY33086.1| hypothetical protein RUMLAC_01093 [Ruminococcus lactaris ATCC
29176]
Length = 444
Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats.
Identities = 94/439 (21%), Positives = 170/439 (38%), Gaps = 48/439 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++ I++ L ++ VGG VRDS++ QD DI T+ P+ + ++F + I
Sbjct: 7 KKVLFIINNLQLHGYEAFAVGGCVRDSILARRPQDWDITTSAKPEEIKKLFR----RTID 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ K F++TT R D + R+ K FT + D RRDFTINA+ +
Sbjct: 63 TGIEHGTVTVLFGKDSFEVTTYRIDGAYEDSRHPKEVQFTNRLEEDLRRRDFTINAMAYN 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
Q +++D GG+ DL + I+ +GD R ED LRILR RF A +
Sbjct: 123 DQVRLVDVFGGMQDLNHHLIRCVGDPEERFSEDALRILRAVRFSAQLNFPIESATADAIR 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
A I + + L+ I Y G+ K I + + +
Sbjct: 183 KLAPNLQNISAERIQAELVKLLVSPHPER--IRDAYELGLTKVILPEWDAMEGVAQNTPH 240
Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDKKS----------------------ILS 280
V E K D +LR +L K S
Sbjct: 241 HKYDVAEHTLRALKNVKRDKILRLTMLFHDMGKPMMKTTDENGRDHFRGHALVSEELARS 300
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ + E + + + + +++ G ++ L LA
Sbjct: 301 IMHRLKFDNETIRTVTKLVCYHDYRVEATPKNVRRAMNRIGVELFPYYLAARLADVKAQS 360
Query: 341 THQDTCFI------LQVLSDIIHWKK----PLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390
+Q I ++ +II ++ + G +++ G+ PG+++G++L +
Sbjct: 361 PYQKREKIENIVEMRRLYQEIIKKQECVTLRQLAVGGRELMDLGMKPGRELGSMLSELLE 420
Query: 391 EWINSSFQLSQEDLHHLLR 409
++ + +E L ++
Sbjct: 421 YVLDDPARNDKEILCAYVK 439
>gi|329725402|gb|EGG61885.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Staphylococcus epidermidis VCU144]
Length = 400
Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats.
Identities = 100/403 (24%), Positives = 163/403 (40%), Gaps = 20/403 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + K+ VGG+VRD +M + D+DI T+ PD + IF K IP
Sbjct: 7 EQAKPILKKIQNKGFKAYFVGGSVRDYIMQRPIHDVDITTSATPDEIESIFD----KTIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + ++ITT RS + I R ++V F RD D RRDFT+NA+ D
Sbjct: 63 VGKEHGTINVVFQNDNYEITTFRSEDEYIDHRRPSEVYFVRDLYQDVQRRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++ DY G D+ NR I+ +G R ED LRI+R RF + + IDSD L A
Sbjct: 123 LNYRLYDYFNGQQDINNRVIRTVGVPSERFSEDALRIIRGLRFQSQLNFQ-IDSDTLHAM 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
++ LS ER+ E+ KL+ N + M N F +
Sbjct: 182 SSQISDIQYLSVERVVVELKKLIMGNNVKQSFEVMQNMKAFNY---------IPFFKSFE 232
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + I L +LI Q K LS K + + ++ ++
Sbjct: 233 MSHLHIDEPITFELWVAILIVQQPKDIQLSTLKISNQEKATIKKWVTLIQTLPKIQSKQS 292
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLA---LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
Y D ++ L L L N + I + + + + G
Sbjct: 293 LITLVYDYNLNDIEILLSLHHLLKQNGLTTANHLIINEISIREANEKLPIHCRKELAING 352
Query: 368 DDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D++ + G + + L + I++ ++E++ +
Sbjct: 353 KDILNHTNKNSGPWLKDTLREIEIAVISNQIANTKEEILEWVD 395
>gi|220929703|ref|YP_002506612.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium cellulolyticum H10]
gi|220000031|gb|ACL76632.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium cellulolyticum H10]
Length = 448
Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats.
Identities = 107/447 (23%), Positives = 180/447 (40%), Gaps = 49/447 (10%)
Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66
K+ + ++ LN+ + +VGG VRDS++ + D DI T LP + IF
Sbjct: 5 EKFEFPENAGYVIKKLNEAGYDAYLVGGCVRDSILCKAPYDWDITTNALPIDIKSIFD-- 62
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ T I +GT+ ++ + ++TT R D R KV FT + D RRDFTI
Sbjct: 63 --RTYDTGIKHGTVTVLIGEMCLEVTTYRIDGDYKDFRRPDKVEFTSSLREDLARRDFTI 120
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
NA+ + ++D+ GGL DL+ R IK +GD R ED LR++R RF A G I+
Sbjct: 121 NAMAYHPEQGLVDFFGGLQDLKKRIIKAVGDPEQRFREDALRMMRAIRFSAQLGF-EIEE 179
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
A + +SSERI E+NK L ++NP + +++ GI I + +
Sbjct: 180 ATFEAIKSNSALIANISSERIRDELNKTLVSENPEH-FNYLHQTGILPYILPEFERCYKT 238
Query: 245 QLSQVIEAEQVFEWKI--------DSLLRFIVLISWQDKKS------------------- 277
+ V + + D +LR+ VL+ K
Sbjct: 239 EQINPYHVYNVADHTMYAVKSIENDHILRWTVLLHDVGKPPRKTTDSKGIDHFYGHQAVS 298
Query: 278 ---ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
+ + +E ++ + + I+K GD++ LK+ A
Sbjct: 299 SQIAEKVLNRLRFDKESIKKIVLLVKYHDMDIEDTPKSIRKAVNKIGDELFPLLLKVQKA 358
Query: 335 LHYNNLTH------QDTCFILQVLSDII----HWKKPLFPLTGDDVVK-YGIPPGKKVGN 383
I ++ SDI K + GDD+++ G+ PG ++
Sbjct: 359 DKMAQNPKFLAERIVKWNRIEKIYSDIKSEQQCLSKKDMAVNGDDLIQLLGMKPGIQIRE 418
Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLRK 410
+L + + ++ L L +K
Sbjct: 419 MLDYLCDCVLECPELNEKQKLLELAKK 445
>gi|325971141|ref|YP_004247332.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Spirochaeta sp. Buddy]
gi|324026379|gb|ADY13138.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Spirochaeta sp. Buddy]
Length = 452
Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats.
Identities = 114/443 (25%), Positives = 187/443 (42%), Gaps = 48/443 (10%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + G IVGGAVRD L+ L ++D D T LPD+VM +F
Sbjct: 4 FPISPGIRRFAKHFIDGGFSLYIVGGAVRDHLLGLKIEDYDFTTDALPDQVMHLFK---- 59
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFT-RDWKADSLRRDFTINA 126
VIPT I +GT+ + K+ F++TT RS+ DGR+ V + + D RRDFTINA
Sbjct: 60 TVIPTGIEHGTVTVHFEKQSFEVTTFRSEAEYLDGRHPSSVSFIPNLEEDLKRRDFTINA 119
Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
AD G ++D+ GG DL+N+TI+ IG+ R ED LRILR R A +ID
Sbjct: 120 FAADCTNGHILDFHGGKEDLKNKTIRAIGNPIQRFEEDALRILRAARIAAKLNF-SIDDQ 178
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE----- 240
+ A + KK L +S+ERI E+ KL+ + +P + ++ GI I + ++
Sbjct: 179 TVSAMQEMKKNLSKVSAERIRDELFKLVLSNHPATGLTYLRTQGILTLIIPEFKQADGLY 238
Query: 241 ----ISLDQLSQVIEAEQV-------FEWKIDSLLRF---------------IVLISWQD 274
D LS I A Q E ++ LL
Sbjct: 239 QGGMHHEDVLSHCISACQASVLVASSLEVRLACLLHDIGKSEVVVASESRNTFAKHELVG 298
Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNF--NQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
+ ++ K+ E + + + Q S +++ G + ++
Sbjct: 299 ENITQTILKRLKASNEQIHAVSHLVRHHMFDYQSNWSDSAVRRFITRVGLAFIPLLFQVR 358
Query: 333 LALHYNNLTHQDTCFILQVLSDII-------HWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385
+A +T + ++ I + G+D++ GIP G+++G L
Sbjct: 359 IADQIAIHGKANTLLLDELKLRIEAILQSHDALSIKDLAVNGNDLMSVGIPKGQRIGTTL 418
Query: 386 VHCKQEWINSSFQLSQEDLHHLL 408
+ + ++ Q +++ L L
Sbjct: 419 TYLLETVLDDPRQNTRDTLLKLA 441
>gi|163791067|ref|ZP_02185487.1| poly A polymerase [Carnobacterium sp. AT7]
gi|159873623|gb|EDP67707.1| poly A polymerase [Carnobacterium sp. AT7]
Length = 400
Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats.
Identities = 87/401 (21%), Positives = 171/401 (42%), Gaps = 19/401 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+ + + ++ VGG+VRD+L+ ++ D+DIAT+ PD + +IF K I
Sbjct: 9 KQALPIIDKIEEAGFEAYFVGGSVRDTLLKETINDVDIATSAKPDEIKQIFQ----KTID 64
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + ++ITT R++ R V F R K D RRDFTINAL +
Sbjct: 65 VGIEHGTVMVLWKDATYEITTFRTESTYQDFRRPDNVEFVRSLKEDLKRRDFTINALAMN 124
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G++IDY G DL + IK +G+ R ED LR++R RF + +D + +A
Sbjct: 125 RDGQIIDYFEGQTDLEKKLIKAVGNPEERFFEDALRMMRGVRFVSQLNF-EMDRETELAI 183
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQ 248
K L+ ++ ERI E KLL + ++ +++ L++ ++
Sbjct: 184 QKNHPLLEKIAIERIQVEFTKLLLGSGRKKGLE-LFIRTNLFYYCPGLKDQKKALEEFAK 242
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ L+ ++ + + + ++ + S ++ L
Sbjct: 243 LECTIDNRIVAWTMLIYYLS--KSKPASEAEPFLRAWKCSKKEIAQVRSAL--FALEQRL 298
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ ++ Y G + + KI L + I + + + K + G+
Sbjct: 299 NDTFNSQVLYQVGLPIALDVEKIMACLGHT----ASFERIHSMYQGLPIYNKKEIKINGN 354
Query: 369 DVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
D+ PGK +G++++ + + ++ +
Sbjct: 355 DLQAALNRKPGKWLGDLMIEMETAILAGELVNEKQAILEWA 395
>gi|270009743|gb|EFA06191.1| hypothetical protein TcasGA2_TC009040 [Tribolium castaneum]
Length = 425
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 118/407 (28%), Positives = 202/407 (49%), Gaps = 19/407 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L + S+ + + I GGAVRD L L D+D ATT P ++ +F+ +
Sbjct: 23 LFTDELKTLASMFKRYGYEIRIAGGAVRDLLSGLRPTDLDFATTATPVQMKEMFTAENVR 82
Query: 70 VIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI K+ F++TTLR D++TDGR A+V FT DW D+LRRD TIN++
Sbjct: 83 MINMNGEKHGTITPRINDKENFEVTTLRIDVVTDGRRAEVQFTTDWLLDALRRDLTINSM 142
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSD 185
+ D +G V DY G DL+ ++F+GDA RI EDYLRILR+FRF+ + +
Sbjct: 143 FLDFEGAVYDYFYGYEDLKVHKVQFVGDAATRIKEDYLRILRYFRFYGRIAKEADKHEEG 202
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L A + K+GL +S ERIW E+ K+LE + ++ + + G+ I L + ++++
Sbjct: 203 TLNAIRENKEGLGNISGERIWMELRKILEGNFAGDLLIKIIDCGLSSYIGLP-ERPNVEE 261
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
L +V + + +LL + QD L+ K S+ I+
Sbjct: 262 LKKVWQNCGHLKLHPITLL--CATLRNQDDAVALNSRLKLSVFERDLALFITEHRAPKPH 319
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+P + + + V +++ ++ + L + +W P FP+
Sbjct: 320 VKPLMPYQQLVLKINNKNVFQYVVEVLKYINSPH------------LEEFQNWTIPKFPV 367
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
TG+ + + G+ G+K+G +L + W + +++S EDL + ++
Sbjct: 368 TGNMLKEVGVESGRKMGLVLTELRNYWADQEYKISAEDLLKQVPNIL 414
>gi|255656450|ref|ZP_05401859.1| putative poly(A) polymerase [Clostridium difficile QCD-23m63]
gi|296450104|ref|ZP_06891866.1| polyA polymerase [Clostridium difficile NAP08]
gi|296878485|ref|ZP_06902491.1| polyA polymerase [Clostridium difficile NAP07]
gi|296261112|gb|EFH07945.1| polyA polymerase [Clostridium difficile NAP08]
gi|296430569|gb|EFH16410.1| polyA polymerase [Clostridium difficile NAP07]
Length = 445
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 104/439 (23%), Positives = 178/439 (40%), Gaps = 50/439 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+ L K ++ IVGG VRD L+ D DI T+ P+ V+ +F K IP
Sbjct: 8 KKVDYIIKELEKNGYEAYIVGGCVRDCLLERVPNDWDITTSARPEVVVELFE----KTIP 63
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + F++TT R D +DGR+ + FT + D RRDFTIN++ +
Sbjct: 64 TGIQHGTVTVMVEHEPFEVTTYRIDGNYSDGRHPDSIEFTNNIVKDLSRRDFTINSIAYN 123
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D G D++N+ I+ +G+ R ED LR+LR RF A NID +
Sbjct: 124 SETGLVDPFNGYEDIQNKYIRCVGNPVDRFEEDALRMLRAVRFSAQLNF-NIDEGTEQSI 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K +K +S ERI +E NK+L + + + + + G+ K I ++ E+
Sbjct: 183 HKKSDLIKNVSIERIQTEFNKILVSDSSK--LNLLKSTGLLKFIIPEICELEDVTQHNPY 240
Query: 251 EAEQVFEWKIDSL------------------------------LRFIVLISWQDKKSILS 280
V + + + + S + K
Sbjct: 241 HIYDVQKHTLIATEVIEDELYLKLTMLFHDLGKKVTKTTDKNGVDHFYTHSRESVKIAKK 300
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-KVMIAKLKIFLALHYNN 339
+ K+ ++ + + IKKL D ++ +K+ A
Sbjct: 301 ILKRLKYDNYTINKVLILIQYHDYRIEPKRKIIKKLLNKLEDVELFEDLIKVNWADTLAK 360
Query: 340 LTHQDTCFILQVLSDIIHWKK----------PLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
IL ++ +K + G D++ GI PGK +G+IL +
Sbjct: 361 NPKYAKQKILNLIECEKEFKHIINQKECFNLKDLAINGKDLISIGIKPGKDIGHILNNML 420
Query: 390 QEWINSSFQLSQEDLHHLL 408
+ IN+ +E L
Sbjct: 421 EIVINNPELNEKEILKEKA 439
>gi|12724561|gb|AAK05657.1|AE006386_8 poly(A) polymerase [Lactococcus lactis subsp. lactis Il1403]
Length = 411
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 96/405 (23%), Positives = 189/405 (46%), Gaps = 24/405 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+L + + ++ VGG+VRD L+ + D+DIAT+ P+ + IF I
Sbjct: 25 QAKPVLEKIIEHGFEAYFVGGSVRDILLGREIHDVDIATSAYPEEIKDIFP----YTIDV 80
Query: 74 SISYGTIKIICRK---KYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
I +GT+ ++ K ++++ITT R++ R V F RD + D RRDFTINA
Sbjct: 81 GIEHGTVLVLAGKSEAEHYEITTFRTESKYTDYRRPDHVDFVRDLREDLKRRDFTINAFA 140
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D G++ID GL DL+ R + +G A R ED LRI+R RF A + I++ +
Sbjct: 141 CDVNGQIIDLFDGLTDLKERRLTAVGSALERFNEDALRIMRAMRFAATLDFQ-IENKTFL 199
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A ++ L+ +S ERI+ E +KLL ++ N + + G +K + D+Q+ +L ++
Sbjct: 200 AMCESAHLLEKISVERIFIEFDKLLLGQDWRNGLTLLLKSGAYKYL-PDLQDSALKKVLT 258
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ + F+ + + S D + + +K+ + E F+ +
Sbjct: 259 DLSVDFHFQNSEQAWAALLTRFSNVD---VKTFLRKWKVSNEFAKFVADLVSAYEL---- 311
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
Y +G + ++ ++ +A + + + + + K + G
Sbjct: 312 -DSWDLMSLYHFGLEKVLLVDELKVAYGL----KINREQAVTINNQLQIHDKSEIVIAGK 366
Query: 369 DVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
D++ ++ + PG ++G IL +++ + + + Q + ++K++
Sbjct: 367 DLMEEFSLEPGPELGKILKIIEEKIVKNELKNEQAAIFAEVKKML 411
>gi|91199952|emb|CAJ72994.1| similar to poly(A) polymerase [Candidatus Kuenenia stuttgartiensis]
Length = 437
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 97/433 (22%), Positives = 167/433 (38%), Gaps = 40/433 (9%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ I I+ L + GG VRD +M D DIAT LP VM +F K
Sbjct: 6 NAIEIVKTLQDKGFDALFAGGCVRDMIMRRESADYDIATNALPHDVMNLFK----KTFSV 61
Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ- 131
YG + ++ F++ T R++ +DGR+ V + D RRDFTIN L D
Sbjct: 62 GTQYGVVVVVKDGHNFEVATFRTEKSYSDGRHPDYVSFSTAEEDVRRRDFTINGLLYDPV 121
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ +++DYVGG +D+ I+ IGD R+ ED LR++R RF + +
Sbjct: 122 KKEMLDYVGGRDDIAAGIIRTIGDPVERLTEDKLRMIRAVRFACRFNFHIHEETRQAIIN 181
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
A + +S+ERI E+ K++ NP I + + +EI +V E+ + +
Sbjct: 182 LAPQIHV-VSAERIREELQKIITGPNPHLGIQLLDELCLLREILPEVSEMKGVRQPENFH 240
Query: 252 AE-QVFEW---------KIDSLLRFIVLISWQDKKSIL--------------------SM 281
E VF L VL+ K +
Sbjct: 241 PEGDVFTHTLLCLSKMENPSWTLAMGVLLHDMGKPRTFQELDRIRFNLHEKVGADITAKI 300
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
+ + +I + K + KL L+ + ++ +
Sbjct: 301 CNRLKTSNADKERIIWLVLKHLCFKDAKKMRLNKLKRLFAHEAYKELEELCRIDALASSG 360
Query: 342 HQDTCFILQVLSDIIHWK--KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399
+ + + + + + KP +TG D++ G+ PG +IL + E ++ +
Sbjct: 361 DLSDYYFCREMFEKLSKEEVKPKPLITGHDLIAIGLTPGPAFKHILTKIEDEQLDGNITT 420
Query: 400 SQEDLHHLLRKLI 412
+E L ++L
Sbjct: 421 KEEALKK-AQELA 432
>gi|160933669|ref|ZP_02081057.1| hypothetical protein CLOLEP_02530 [Clostridium leptum DSM 753]
gi|156867546|gb|EDO60918.1| hypothetical protein CLOLEP_02530 [Clostridium leptum DSM 753]
Length = 422
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 92/404 (22%), Positives = 161/404 (39%), Gaps = 32/404 (7%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I ++ L + ++ VGG VRD L+ +D D A + LPD + V T +
Sbjct: 38 IKLIRRLEEKGFEAYAVGGCVRDMLLGKKPEDYDFAVSALPDETKQAL--NGVPVFDTGL 95
Query: 76 SYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+GT+ + +ITT R++ R KV FTR D RRDFT+NA+ +
Sbjct: 96 RHGTVTAVVDGHAAEITTYRTESGYSDFRRPDKVGFTRSLSEDLSRRDFTVNAMAFHPER 155
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
++D GG DL+NR +K +G+ R ED LRILR RF + E I+ D A +K
Sbjct: 156 GLVDCFGGKEDLKNRILKCVGEPERRFREDALRILRCLRFSS-ALEFAIEEDTRQALLKH 214
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
++ LK ++ ER+ +E +KL+ + + + +L L +
Sbjct: 215 RELLKKIAPERLQAEFSKLILGEWAEQVLTEYLPVFQVFLPEAGQRRSALSWLPAEKK-- 272
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313
LR + S ++ + + + +
Sbjct: 273 ----------LRLAGVFSGCTPDETARALERLRYDGKTIRTVTTLERYRQVPLETDRRQA 322
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII----HWKKPLFPLTGDD 369
+KL +L G + L+ ++ +L+ L I + G+D
Sbjct: 323 RKLVFLLGMETAEELLRF-----------REEPELLKWLEVIRGQGLCCSLSQLSVNGED 371
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+++ G P GK +G L Q ++ + + +E L + +
Sbjct: 372 LIRLGYPEGKGIGKALNRLLQLVLDETLENQKELLLKKAKSWMK 415
>gi|257057896|ref|YP_003135728.1| tRNA adenylyltransferase [Saccharomonospora viridis DSM 43017]
gi|256587768|gb|ACU98901.1| tRNA adenylyltransferase [Saccharomonospora viridis DSM 43017]
Length = 523
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 94/454 (20%), Positives = 167/454 (36%), Gaps = 57/454 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ + +VGG+VRD+L+ D+D T P+++ RI S V
Sbjct: 29 SPIADELAARFSRAGHRLYLVGGSVRDALLGKLSTDLDFTTDARPEQIQRIVSGWAEAVW 88
Query: 72 PTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ + +ITT R GR+ +V F ++D +RRDFT+NA+ D
Sbjct: 89 DTGIEFGTVGVAKHGTTCEITTFRADRYDRVGRHPEVEFGDSIESDLVRRDFTVNAMAVD 148
Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
K +D GL L RT+ +D LR+LR RF + G +
Sbjct: 149 LATKSFVDPHNGLEALARRTLDTPATPEESFADDPLRMLRAARFVSQLGFEPEPRVVRAM 208
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD------------ 237
+ +K +++ER+ +E++KL+ P I M + G+ + +
Sbjct: 209 T-DMADEIKRITAERVQAELSKLILGSAPRKGIELMVDTGLADHVLPEVPGMRLAIDEHH 267
Query: 238 ----VQEISLDQLSQVIEAEQVFEW--KIDSLLRFIVLISWQDKK--------------- 276
V + SL L Q I+ E E + D +LR L+ K
Sbjct: 268 QHKDVYQHSLKVLEQAIDLETAHEPRLEPDLVLRLAALLHDIGKPATRRFEPGGGVSFHH 327
Query: 277 -------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
+ P+++ + + E Y+ ++
Sbjct: 328 HEVVGAKMARKRLRALRYPKDVVNDVSQLVFLHLRFHGYGRGEWTDSAVRRYVTDAGPLL 387
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGI 375
KL + + + + D+ K L G+++++ G+
Sbjct: 388 PKLHKLVRADCTTRNKRKAAALQRAYDDLEQRIERIAKEEDLAKVRPDLDGNEIMRILGV 447
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
PG VG H K+ ++ E + LLR
Sbjct: 448 EPGPIVGKAWKHLKELRLDRGPLGRDEAVAELLR 481
>gi|312622082|ref|YP_004023695.1| polynucleotide adenylyltransferase region [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202549|gb|ADQ45876.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor
kronotskyensis 2002]
Length = 394
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 101/408 (24%), Positives = 178/408 (43%), Gaps = 19/408 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + ++ LLN+ K+ +VGG +RD L++ QD DIAT P+ V+ +F K
Sbjct: 4 LKNEP-MKVIKLLNQHGFKAYLVGGCLRDYLLSKEPQDFDIATDAKPEDVIHLFE----K 58
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
IPT I +GT+ +I ++TT R + R+ KV FT D RRDFTINA+
Sbjct: 59 TIPTGIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMA 118
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+IDY GG+ DL+N+ ++ +G+ H R ED LRILR RF I++
Sbjct: 119 YHPDEGLIDYFGGIEDLKNKIVRCVGNPHERFFEDALRILRCIRFATQLSFV-IENKTFE 177
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K LK +S ERI E++K LE+KN + +Y + I + +I L
Sbjct: 178 ALKSLKHLLKKISKERINIELSKTLESKNSSYGLELLYESSVGSIIIPEYSQIYLY---- 233
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ + + F + F + +D + + + ++ F + N
Sbjct: 234 LSQVDFDFIPTKFKVPAFFACL--KDGILVEKLMRDLKFEKKKINFAVKLCNYL-----T 286
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
KL + +I + H+ + + K L+G
Sbjct: 287 MECSQDKLVKKIFFEEEKEVEEILTTISILKSDHRILQTFNDLKRENKLIHKKDVQLSGK 346
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
D++ G+ G+ +G +L + + + + S++++ + + + +
Sbjct: 347 DLLVLGLR-GEMIGKVLNTVYEYVLENPEKNSKDEILNYVNLYLQQGK 393
>gi|146297248|ref|YP_001181019.1| tRNA adenylyltransferase [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145410824|gb|ABP67828.1| tRNA adenylyltransferase [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 394
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 105/408 (25%), Positives = 182/408 (44%), Gaps = 19/408 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D L ++ LN+ K+ +VGG +RD L+ + QD DIAT P+ VM++F K
Sbjct: 4 LKDEPLQ-VIKRLNQHNFKAYLVGGCLRDYLLGTTPQDFDIATDAKPEDVMKLFE----K 58
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
IPT I +GT+ +I ++TT R + R+ V FT D RRDFTINAL
Sbjct: 59 TIPTGIKHGTVTVIINNVKIEVTTFRIEKEYQNHRWPTVEFTDSLYEDLKRRDFTINALA 118
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+IDY GL+DL+N+ ++ +G+ H R ED LRILR RF +ID
Sbjct: 119 YHPDEGLIDYFNGLDDLKNKIVRCVGNPHERFFEDALRILRCIRFATQLNF-SIDEKTFE 177
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ K LK +S ERI +E++K+L +KN L I +Y G+ + + + +I
Sbjct: 178 GVVLLKDLLKKISKERINAELSKILRSKNSLYGIKLLYESGVGETVIPEYIKIYSF---- 233
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ E + F +D K + + + ++ CN+
Sbjct: 234 LHSTEFDLILSEFKIPAFFACF--RDPKKVEDIMRDLRFDKKNIILATKL--CNYLNSEY 289
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ + K Y +K+ + L + + + + + GD
Sbjct: 290 ATEYLVKKVYFEEEKMPEGIISTLSILKKDKTLMELFSTLKAQNKLVSKKDVK---IKGD 346
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
D++K G+ GK++GN+L + +++ + +++++ + +
Sbjct: 347 DLLKLGLK-GKELGNVLQIIYEYILHNPEKNNRDEILKHVNSYFKQGK 393
>gi|27468063|ref|NP_764700.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis ATCC 12228]
gi|57866965|ref|YP_188604.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis RP62A]
gi|282876109|ref|ZP_06284976.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Staphylococcus epidermidis SK135]
gi|293366574|ref|ZP_06613251.1| polyA polymerase [Staphylococcus epidermidis M23864:W2(grey)]
gi|73619863|sp|Q8CP70|CCA_STAES RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|73619864|sp|Q5HP86|CCA_STAEQ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|27315608|gb|AAO04742.1|AE016747_239 putative poly(A) polymerase [Staphylococcus epidermidis ATCC 12228]
gi|57637623|gb|AAW54411.1| polyA polymerase [Staphylococcus epidermidis RP62A]
gi|281295134|gb|EFA87661.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Staphylococcus epidermidis SK135]
gi|291319343|gb|EFE59712.1| polyA polymerase [Staphylococcus epidermidis M23864:W2(grey)]
gi|329735392|gb|EGG71684.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Staphylococcus epidermidis VCU045]
gi|329737267|gb|EGG73521.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Staphylococcus epidermidis VCU028]
Length = 400
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 100/403 (24%), Positives = 163/403 (40%), Gaps = 20/403 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + K+ VGG+VRD +M + D+DI T+ PD + IF K IP
Sbjct: 7 EQAKPILKKIQNKGFKAYFVGGSVRDYIMQRPIHDVDITTSATPDEIESIFD----KTIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + ++ITT RS + I R ++V F RD D RRDFT+NA+ D
Sbjct: 63 VGKEHGTINVVFQNDNYEITTFRSEDEYIDHRRPSEVYFVRDLYQDVQRRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++ DY G D+ NR I+ +G R ED LRI+R RF + + IDSD L A
Sbjct: 123 LNYRLYDYFNGQQDINNRVIRTVGVPSERFSEDALRIIRGLRFQSQLNFQ-IDSDTLHAM 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
++ LS ER+ E+ KL+ N + M N F +
Sbjct: 182 SSQISDIQYLSVERVVVELKKLIMGNNVKQSFEVMQNMKAFNY---------IPFFKSFE 232
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + I L +LI Q K LS K + + ++ ++
Sbjct: 233 MSHLHIDEPITFELWIAILIVQQPKDIQLSTLKISNQEKATIKKWVTLIQTLPKIQSKQS 292
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLA---LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
Y D ++ L L L N + I + + + + G
Sbjct: 293 LITLVYDYNLNDIEILLSLHHLLKQNGLTTANHLIINEISIREANEKLPIHCRKELAING 352
Query: 368 DDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D++ + G + + L + I++ ++E++ +
Sbjct: 353 KDILNHTNKNSGPWLKDTLREIEIAVISNQIVNTKEEILEWVD 395
>gi|189182930|ref|YP_001936715.1| poly(A) polymerase [Orientia tsutsugamushi str. Ikeda]
gi|189179701|dbj|BAG39481.1| poly(A) polymerase [Orientia tsutsugamushi str. Ikeda]
Length = 402
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 120/410 (29%), Positives = 214/410 (52%), Gaps = 10/410 (2%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M I F ++ +L +L + I+GGA+R+ ++ V DIDIAT +LP++VM
Sbjct: 1 MTEIPICIIFPSQNIEKLLLMLASSIKSARIIGGAIRNIILGHPVNDIDIATPLLPEQVM 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ K T I +GT+ + +++ F+ITTLR D+ GRYAKV F+ D+ D+ RR
Sbjct: 61 NLLKLNNIKCYATGIKFGTVTAVIKQEKFEITTLRQDIQCYGRYAKVEFSNDYFEDAKRR 120
Query: 121 DFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINAL + + DY GL DL++R + FIGD+ RI ED LRILRFFRF ++Y
Sbjct: 121 DFTINALSYSFEQSLLYDYFNGLQDLKDRRVIFIGDSDTRIQEDVLRILRFFRFSSYYA- 179
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
++ID +G + K K L ILS ER+ E++K++ + N +V M I I L ++
Sbjct: 180 RSIDQEGYQSCAKYAKSLSILSKERVVQELSKIIISPNAYETLVKMAEINITYYIGLRLK 239
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
++L V + ++ ++ + VL+S D + + + + + ++
Sbjct: 240 -LNLSVFKNVTTIAKKKSILLNVIVLYSVLLSSNDVQDLKEILSNLRFSKAMIRKIVRLC 298
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
++ + + + ++L + + + L L ++ ++ + Q + ++
Sbjct: 299 LFLSECQSKNAIFLIRKYWLTRADNIDDYINLALLL--GCISDEEANMLKQQVYEL---- 352
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
P P++G D+ + G + + +L++ WINS F L++++L LL+
Sbjct: 353 IPKLPVSGSDLKELGFKK-QAIQEVLLYLNHAWINSDFTLNKQELIDLLK 401
>gi|291551157|emb|CBL27419.1| uncharacterized domain HDIG [Ruminococcus torques L2-14]
Length = 446
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 101/440 (22%), Positives = 188/440 (42%), Gaps = 48/440 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++ I++ L + VGG VRDS++ QD DI T+ P+ + IF + +
Sbjct: 7 KKVLFIINNLQLAGYDAFAVGGCVRDSILARKPQDWDITTSAKPEAIKEIFR----RTVD 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ K +++TT R D + R+ K FT + D RRDFTINA+ +
Sbjct: 63 TGIEHGTVTVMIGKDSYEVTTYRIDGAYEDSRHPKEVRFTNCLEEDLRRRDFTINAMAYN 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GG+ DL + I+ +GD R ED LRILR RF A I+ D A
Sbjct: 123 DDVRLVDVFGGMQDLNHHLIRCVGDPRERFSEDALRILRAVRFSAQLDF-PIEPDTAKAV 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ LK +S+ERI +E+ KLL + +P I GI K + + + + + +
Sbjct: 182 KELAPNLKNISAERIQTELVKLLTSPHPER-IQDACELGITKVVLPEWDAMVGVKQNTIH 240
Query: 251 EAEQVFEWKIDSL--------LRFIVLISWQDKKS----------------------ILS 280
V E + +L LR +L K + +
Sbjct: 241 HKYDVAEHTLHTLKHVKRDKYLRLTMLFHDMGKPAMKTTDEKGNDHFKGHALESEKIART 300
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ K+ E + + + + +++ G ++ L + LA +
Sbjct: 301 VLKRLKFDNETIRIVTKLVCYHDYRMEATPANVRRAMNRIGVELFPYYLAVRLADAKSQS 360
Query: 341 THQDTCFI----------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390
T+ I Q+L + ++G ++++ G+ PG+++G +L +
Sbjct: 361 TYMRREKIENIVEIRNLYKQILMENQCVTLRQLAVSGRELMELGMKPGRELGAMLSELLE 420
Query: 391 EWINSSFQLSQEDLHHLLRK 410
++ + ++E+L +++
Sbjct: 421 YVLDDPERNTKENLCKYVKE 440
>gi|304322137|ref|YP_003855780.1| putative poly(A) polymerase [Parvularcula bermudensis HTCC2503]
gi|303301039|gb|ADM10638.1| possible poly(A) polymerase [Parvularcula bermudensis HTCC2503]
Length = 398
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 107/412 (25%), Positives = 174/412 (42%), Gaps = 26/412 (6%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSV-----QDIDIATTILPDRVMRI 62
W D +L++LN+ ++ VGG +RDSL+ DIDIATT+LP+ +++
Sbjct: 7 AWARSGDAAKLLAILNEEG-EARFVGGCIRDSLLGQPPGAAGHTDIDIATTLLPEETLKL 65
Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
+ +VIPT + +GT+ + F+ITTLR D+ TDGR+A V FT DW+ D+ RRDF
Sbjct: 66 LGRHGIRVIPTGLEHGTVTAVLSAVPFEITTLRCDVATDGRHATVSFTEDWEKDAARRDF 125
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
TINAL D++G++ DY G DL R ++FIG RI EDYLRILRF RF A +G
Sbjct: 126 TINALSLDKEGRLYDYHDGRADLMARRVRFIGRPAQRIKEDYLRILRFMRFSARFGGTLD 185
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ + A L + A P + I + +S
Sbjct: 186 VAGWQASEALAGGLLHLSKERIWSEVSRLFCAAGAPTVLSEAAKGPILDAIIQVAPDPVS 245
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
++ E ++ + SM + P +
Sbjct: 246 FARIHAAREGAPSAGL----------CLAALWPTATRSMLQSAFKP-PTSVLAHALTLPE 294
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +++ + YG L + +++ + P+
Sbjct: 295 IAKVWEAGATPREVLFSYGRPAAEEGLALCRLSAAAKA---------EIVRALTTAPVPV 345
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
P+ G D + G+ G VGN L + W ++F + L +++A+
Sbjct: 346 LPVRGADFIAAGLTAGPMVGNALKDFTERWAQANFPEDPAIVRSLFDEVMAA 397
>gi|254976061|ref|ZP_05272533.1| putative poly(A) polymerase [Clostridium difficile QCD-66c26]
gi|255093452|ref|ZP_05322930.1| putative poly(A) polymerase [Clostridium difficile CIP 107932]
gi|255315194|ref|ZP_05356777.1| putative poly(A) polymerase [Clostridium difficile QCD-76w55]
gi|255517863|ref|ZP_05385539.1| putative poly(A) polymerase [Clostridium difficile QCD-97b34]
gi|255650979|ref|ZP_05397881.1| putative poly(A) polymerase [Clostridium difficile QCD-37x79]
Length = 445
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 101/439 (23%), Positives = 176/439 (40%), Gaps = 50/439 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+ L ++ +VGG VRD L+ D DI T+ P+ V+ +F K IP
Sbjct: 8 KKVDYIIKELETNGYEAYVVGGCVRDCLLERVPNDWDITTSARPEVVVELFE----KTIP 63
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + F++TT R D +DGR+ + FT + D RRDFTIN++ +
Sbjct: 64 TGIQHGTVTVMIEHEPFEVTTYRIDGNYSDGRHPDSIEFTNNIVKDLSRRDFTINSIAYN 123
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D G D++N+ I+ +G+ R ED LR+LR RF A I +
Sbjct: 124 SKTGLVDPFNGYEDIQNKYIRCVGNPVDRFEEDALRMLRAVRFSAQLNF-KIAEGTKQSI 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K +K +S ERI +E NK+L + + + + + G+ K I ++ E+
Sbjct: 183 HKKADLIKNVSIERIQTEFNKILVSDSSK--LNLLKSTGLLKFIIPEICELEDVTQHNPY 240
Query: 251 EAEQVFEWKI--------DSLLRFIVLISWQDK----------------------KSILS 280
V + + + L+ +L K K
Sbjct: 241 HIYDVQKHTLISTEVIEDELYLKLTMLFHDLGKKVTKTTDKNGVDHFYTHSRESVKIAKK 300
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-KVMIAKLKIFLALHYNN 339
+ ++ ++ + + IKKL D ++ +K+ A
Sbjct: 301 ILRRLKYDNYTINKVLILIQYHDYRIEPKRKIIKKLLNKLEDVELFEDLIKVNWADTLAK 360
Query: 340 LTHQDTCFILQVLSDIIHWKK----------PLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
IL ++ +K + G D++ GI PGK +G+IL
Sbjct: 361 NPKYAKQKILNLIECEKEFKHIINQKECFNLKDLAINGKDLISIGIKPGKDIGHILNKML 420
Query: 390 QEWINSSFQLSQEDLHHLL 408
+ IN+ +E L
Sbjct: 421 EIVINNPELNEKEILKEKA 439
>gi|125623783|ref|YP_001032266.1| tRNA CCA-pyrophosphorylase [Lactococcus lactis subsp. cremoris
MG1363]
gi|166233862|sp|A2RJT1|CCA_LACLM RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|124492591|emb|CAL97536.1| poly(A) polymerase [Lactococcus lactis subsp. cremoris MG1363]
gi|300070552|gb|ADJ59952.1| tRNA CCA-pyrophosphorylase [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 402
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 93/409 (22%), Positives = 185/409 (45%), Gaps = 24/409 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+L +++ ++ VGG+VRD L+ + D+DIAT+ P+ + IF I
Sbjct: 12 QAQPVLEKISEHGFEAYFVGGSVRDVLLGREIHDVDIATSAYPEEIKDIFP----YTIDV 67
Query: 74 SISYGTIKIICRK---KYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
I +GT+ ++ K ++++ITT R++ R V F RD + D RRDFT+NA
Sbjct: 68 GIEHGTVLVLAGKSEAEHYEITTFRTESKYTDYRRPDHVDFVRDLREDLKRRDFTVNAFA 127
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D +G++ID GL DL+ R + +G A R ED LRI+R RF + I+
Sbjct: 128 CDFEGQIIDLFDGLTDLKERRLTAVGSALERFNEDALRIMRAMRFASTLDF-KIEEKTFS 186
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A + L+ +S ERI+ E++KLL N + + +K + D Q+++L ++
Sbjct: 187 AMRERSHLLEKISVERIFIELDKLLLGSEWRNGLTLLIESEAWKYL-PDFQDLALKKVLT 245
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ + F+ + + S D + + +K+ + E ++ +
Sbjct: 246 ELSVDFHFKNSEQAWAALLTRFSNID---VKAFLRKWKVSNEFSKYVADLVSAYEL---- 298
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
Y +G + + ++ +A + D + + + K + G
Sbjct: 299 -ENWDLVSLYHFGLEKALLVDELKIAFGRD----IDRERAVFINDQLQIHDKSEIVIAGK 353
Query: 369 DVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
D++ ++ + PG ++G IL +++ + + + Q + ++K++ +
Sbjct: 354 DLMDEFSLKPGPELGKILKTIEEKIVKNELKNEQIAILTEVKKMLELEK 402
>gi|30019684|ref|NP_831315.1| tRNA CCA-pyrophosphorylase [Bacillus cereus ATCC 14579]
gi|218234591|ref|YP_002366317.1| tRNA CCA-pyrophosphorylase [Bacillus cereus B4264]
gi|73619742|sp|Q81FP0|CCA_BACCR RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|226702037|sp|B7HHU0|CCA_BACC4 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|29895228|gb|AAP08516.1| Poly(A) polymerase [Bacillus cereus ATCC 14579]
gi|218162548|gb|ACK62540.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus B4264]
Length = 397
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 87/400 (21%), Positives = 174/400 (43%), Gaps = 15/400 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++GK++D G ++ R I +G+A R ED LR++R RF + G +++ A
Sbjct: 121 EEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLEMKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + + + +F L ++S ++L +
Sbjct: 180 ETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERLLKAT 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + F + ++ S+ KFS + + +K
Sbjct: 238 QYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRTRKEKDWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + + + ++ +TG+D+
Sbjct: 298 V----LLYKTGIHIAEMAERVYEAM-IERYDPTSVERVQSMFHALPIQERQEMNVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ + PG V +L ++ + + +E + L+
Sbjct: 353 LNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 392
>gi|116512356|ref|YP_809572.1| tRNA CCA-pyrophosphorylase [Lactococcus lactis subsp. cremoris
SK11]
gi|123025314|sp|Q02Y22|CCA_LACLS RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|116108010|gb|ABJ73150.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactococcus lactis
subsp. cremoris SK11]
Length = 402
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 93/409 (22%), Positives = 184/409 (44%), Gaps = 24/409 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+L +++ ++ VGG+VRD L+ + D+DIAT+ P+ + IF I
Sbjct: 12 QAQPVLEKISEHGFEAYFVGGSVRDVLLGREIHDVDIATSAYPEEIKDIFP----YTIDV 67
Query: 74 SISYGTIKIICRK---KYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
I +GT+ ++ K ++++ITT R++ R V F RD + D RRDFT+NA
Sbjct: 68 GIEHGTVLVLAGKSEAEHYEITTFRTESKYTDYRRPDHVDFVRDLREDLKRRDFTVNAFA 127
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D +G++ID GL DL+ R + +G A R ED LRI+R RF + I+
Sbjct: 128 CDFEGQIIDLFDGLTDLKERRLTAVGSALERFNEDALRIMRAMRFASTLDF-KIEEKTFS 186
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A + L+ +S ERI+ E++KLL N + + +K + D Q+++L ++
Sbjct: 187 AMRERSHLLEKISVERIFIELDKLLLGSEWRNGLTLLIESEAWKYL-PDFQDLALKKVLT 245
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ + F+ + + S D + +K+ + E ++ +
Sbjct: 246 ELSVDFHFKNSEQAWAALLTRFSNID---VKVFLRKWKVSNEFSKYVADLVSAYEL---- 298
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
Y +G + + ++ +A + D + + + K + G
Sbjct: 299 -ENWDLVSLYHFGLEKALLVDELKIAFGRD----IDRERAVFINDQLQIHDKSEIVIAGK 353
Query: 369 DVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
D++ ++ + PG ++G IL +++ + + + Q + ++K++ +
Sbjct: 354 DLMDEFSLKPGPELGKILKTIEEKIVKNELKNEQIAILTEVKKMLELEK 402
>gi|75760406|ref|ZP_00740450.1| POLY(A) POLYMERASE / TRNA NUCLEOTIDYLTRANSFERASE [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|74492117|gb|EAO55289.1| POLY(A) POLYMERASE / TRNA NUCLEOTIDYLTRANSFERASE [Bacillus
thuringiensis serovar israelensis ATCC 35646]
Length = 400
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 86/400 (21%), Positives = 173/400 (43%), Gaps = 15/400 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 8 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VP 63
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 64 VGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 123
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++G+++D G ++ R I +G+A R ED LR++R RF + G +I++ A
Sbjct: 124 EEGEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMIRGIRFVSTLGF-SIETKTKQAI 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 183 ETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERLLTAT 240
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ F + ++ S+ KFS + ++
Sbjct: 241 RYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKLKDIVASFIAIRTRKERGWDT 300
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + + + + ++ +TG+D+
Sbjct: 301 V----LLYKTGIHIAEMAERVYEAM-IESYDPTSVKRVQSMFHVLPIQERQEMNVTGNDL 355
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ + PG V +L ++ + + +E + L+
Sbjct: 356 LNWANXKPGPWVAEMLQKIEEAIVQGNIVNEKERIREWLQ 395
>gi|296502205|ref|YP_003663905.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis BMB171]
gi|296323257|gb|ADH06185.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis BMB171]
Length = 400
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 87/400 (21%), Positives = 174/400 (43%), Gaps = 15/400 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 8 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VP 63
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 64 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 123
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++GK++D G ++ R I +G+A R ED LR++R RF + G +++ A
Sbjct: 124 EEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLEMKTKQAI 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + + + +F L ++S ++L +
Sbjct: 183 ETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERLLKAT 240
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + F + ++ S+ KFS + + +K
Sbjct: 241 QYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRTRKEKDWDT 300
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + + + ++ +TG+D+
Sbjct: 301 V----LLYKTGIHIAEMAERVYEAM-IERYDPTSVERVQSMFHALPIQERQEMNVTGNDL 355
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ + PG V +L ++ + + +E + L+
Sbjct: 356 LNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 395
>gi|225375849|ref|ZP_03753070.1| hypothetical protein ROSEINA2194_01481 [Roseburia inulinivorans DSM
16841]
gi|225212284|gb|EEG94638.1| hypothetical protein ROSEINA2194_01481 [Roseburia inulinivorans DSM
16841]
Length = 446
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 90/434 (20%), Positives = 165/434 (38%), Gaps = 48/434 (11%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ L + ++ VGG VRD+++ D DI T+ P++V +F I T
Sbjct: 9 VTYIIDTLTQHGFEAYAVGGCVRDTMLGRIPMDWDITTSAKPEQVKELFRH----TIDTG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + F++TT R D + R+ K FT + D RRDFTINA+ + +
Sbjct: 65 IQHGTVTVMLEHEGFEVTTYRIDGEYEDARHPKEVQFTSNLLEDLKRRDFTINAMAYNDK 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D G+ DL I+ +G A R ED LR+LR RF A G +I+ + A +
Sbjct: 125 DGLVDAFDGVGDLERGVIRCVGAAVERFTEDALRMLRAVRFGAQLGF-SIEDETREAIVS 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ +S+ERI E+ KLL + +P + Y G+ + E+ +
Sbjct: 184 LAPNIAKVSAERIQIEMVKLLTSGHP-ELLRTAYETGLTAVFLPEFDEMMKTPQNNPHHC 242
Query: 253 EQVFEWKIDSL------------------------------LRFIVLISWQDKKSILSMA 282
V E + +L + + +
Sbjct: 243 YSVGEHTLHALMEIQPDKVARITMLLHDVAKPMCRTTDEHGVDHFYGHPQEGSLVARKIL 302
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
++ + + C+ + L +++ Y G + A +
Sbjct: 303 RRLKFDNDTTDRVCRLILCHDDNPPLQERTVRRAIYRNGVDQYPLLFAVKRADMLAQSAY 362
Query: 343 QDTCF----------ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
+ Q+++ +TG D++ G+ PGK +G L +
Sbjct: 363 RREEKAEYLKEYEEIYEQIMAKRQCLSIKELAVTGTDLIADGMQPGKAIGETLKQLLEYV 422
Query: 393 INSSFQLSQEDLHH 406
+ ++E L
Sbjct: 423 LEHPEDNTKEKLME 436
>gi|323464448|gb|ADX76601.1| tRNA CCA-pyrophosphorylase [Staphylococcus pseudintermedius ED99]
Length = 400
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 82/410 (20%), Positives = 160/410 (39%), Gaps = 27/410 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
IL L + ++ VGG+VRD +MN + D+DI T PD + +F IP
Sbjct: 9 AKPILERLIQHGYEAYFVGGSVRDFIMNRPIHDVDITTNATPDEIESLFEH----TIPIG 64
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GTI ++ + +++TT R ++ + R +V F RD D RRDFT+NA+ +
Sbjct: 65 KEHGTINVVWSHENYEVTTFRAEAEYVDHRRPTEVYFVRDLYQDVERRDFTMNAIAMNIN 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ ID+ G D+ R I+ +GDA R ED LRILR RF + G ++ + +
Sbjct: 125 YERIDHFEGERDIEQRIIRTVGDAKTRFDEDALRILRGLRFKSQLGFTIEEATFEAMAHQ 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + + + G + F ++ + L + +
Sbjct: 185 MSDLEYLSIERIMNE--------------LTLLIKGTFVAKTFPILEALQLWRYIPYFKD 230
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF-NCNFNQKTLSIP 311
V KI++ + ++ ++ K L + + Q +
Sbjct: 231 VDVAAIKINAPIDMEAFLAILSYRTNYQAFKSLKLSNAQVRTIQTLISAIQVAQTIDTKV 290
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT-----CFILQVLSDIIHWKKPLFPLT 366
++++ Y +G +V + ++ L N + + V D+ + +
Sbjct: 291 QLQQFTYDFGLEVALKINELRPILEDNQIDLPSPIIFSSASLQAVWEDLPIQSREDLAID 350
Query: 367 GDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
G ++ + + G + ++L + I E + +R + S
Sbjct: 351 GKWLMQAFQLKGGPWIKDVLRQVECAVIQRQVNNQTEAIIEWVRTHVKIS 400
>gi|229829762|ref|ZP_04455831.1| hypothetical protein GCWU000342_01859 [Shuttleworthia satelles DSM
14600]
gi|229791751|gb|EEP27865.1| hypothetical protein GCWU000342_01859 [Shuttleworthia satelles DSM
14600]
Length = 461
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 78/441 (17%), Positives = 156/441 (35%), Gaps = 48/441 (10%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ I+ L ++ VGG VRDS++ D DI ++ P + +FS I T
Sbjct: 14 PVRQIIHTLEAAGHEAYAVGGCVRDSVLGRIPDDWDITSSACPREIKALFSH----TIDT 69
Query: 74 SISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKV-VFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ +++TT R D DGR+ + +T D RRDFTINA+
Sbjct: 70 GIQHGTVTVMLDHIGYELTTYRVDGEYLDGRHPRTVRYTPSLTEDLKRRDFTINAMAYHP 129
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
++D G+ DL+ + ++ +GD H R ED LR+LR RF A G
Sbjct: 130 DRGLVDEFDGIGDLKRKLVRCVGDPHQRFTEDALRMLRAVRFAAQLGFGLDADTASAIRD 189
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
A+ K+ + + + + Y G+ + +
Sbjct: 190 LAENLKKVSAERIRVELMKTICSPHPA--CLEMAYELGLTAVFLPEFDACMRTPQNTPHH 247
Query: 252 AEQVFEWKI--------DSLLRFIVLISW----------------------QDKKSILSM 281
V + D +LR L+ + + +
Sbjct: 248 FTDVGHHTLLVMQGVPDDPVLRLAALLHDIAKPVCRTTDERGVDHFKGHPKEGARMAGEI 307
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
++ ++ ++ + + + +++ G + + A
Sbjct: 308 LRRLRFDKDTTDRVVQLVCYHDERPGADLRSVRRAMVRVGAQAFPRLFALKRADMLAQSD 367
Query: 342 HQDTCFI----------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
++ + Q+L ++G D+++ G+P G+ VG +L ++
Sbjct: 368 YKREEKLGEIDDFERLREQILQKKEALSVGDLAISGRDLLEMGLPQGRLVGEVLSALLED 427
Query: 392 WINSSFQLSQEDLHHLLRKLI 412
+ + L R+++
Sbjct: 428 VLEEPEHNQADYLRKKSREIL 448
>gi|163795185|ref|ZP_02189153.1| poly A polymerase family protein [alpha proteobacterium BAL199]
gi|159179583|gb|EDP64112.1| poly A polymerase family protein [alpha proteobacterium BAL199]
Length = 413
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 125/392 (31%), Positives = 183/392 (46%), Gaps = 11/392 (2%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
I W S + + L + VGG VRD+++ L + D+D+ T P+RVM +
Sbjct: 6 RIPAQSWMTASPAAAVFAALAADGVPARFVGGCVRDAVLGLPIGDLDVCTPARPERVMAL 65
Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
K +PT I +GT+ ++ ++TTLR D+ TDGR A V FT DW D+ RRD
Sbjct: 66 VRAAGLKAVPTGIEHGTVTVVADHIPVEVTTLRRDVETDGRRAVVAFTDDWAEDAARRDL 125
Query: 123 TINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T+NALY D G + D GL D R I+F+GDA RI ED LRILRFFRF+A +GE+
Sbjct: 126 TLNALYLDPDGTIYDPTGQGLVDARAGRIRFVGDAETRIREDVLRILRFFRFWARFGEEP 185
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
D GL A + LS ER+W+E+ KL+ A A+ M G+ ++ ++
Sbjct: 186 PDPVGLAACAALASRVPSLSGERVWAELAKLVVACRAAEALSAMAAAGVAACLWPGSADV 245
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+ + VIE EQ K D++ R +I + S R
Sbjct: 246 A--RAVTVIEIEQSLGLKADAVRRLAAMIGAVGNVEPAVSRLRLSRSEADRVRRAFRTEG 303
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
S PE + Y G + + ++ A + + Q + W P
Sbjct: 304 GPAS---SGPERRARIYRAGSQAYLDARVLYTAAEREPV-----EALAQDSALAQAWTPP 355
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
+FP+ G+DV G+PPG G +L + WI
Sbjct: 356 VFPIGGNDVAALGVPPGPTTGRLLRLVEDAWI 387
>gi|303239594|ref|ZP_07326119.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acetivibrio cellulolyticus CD2]
gi|302592765|gb|EFL62488.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acetivibrio cellulolyticus CD2]
Length = 438
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 95/437 (21%), Positives = 166/437 (37%), Gaps = 54/437 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++ I+ LN K+ +VGG VRDS++N +D DI+T+ PD V +F K I
Sbjct: 11 EEVTYIIKKLNDFSFKAYVVGGCVRDSILNKQPKDWDISTSATPDEVKALFD----KTID 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
T I +GT+ ++ ++TT R+ D RD T+N +
Sbjct: 67 TGIKHGTVSVVVNNIAIEVTTFRTG--------STQNNNCLTTDLSYRDLTMNTIAFHPS 118
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D G+ D++N I+ +G+ R ED LR+LR RF A G +I+ L A +
Sbjct: 119 EGLFDPYSGVEDIKNAVIRAVGNPCERFKEDPLRMLRAVRFCATLGF-DIEESTLDAIKR 177
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ------------- 239
+K S ERI E+ K+L + PL + + + + I +
Sbjct: 178 NSALIKNTSQERIRDELTKILISSRPLK-LTLLRETNLLEYILPEFNLCFDITQNHPYHI 236
Query: 240 -EISLDQLSQVIEAEQVFEWKIDSLLR----------------FIVLISWQDKKSILSMA 282
+++ L V E E + LL + K +
Sbjct: 237 FNVAMHSLRAVCEIENEVVLRWTMLLHDTGKALTKSTDREGIDHFYGHPDKSTKIAKDVL 296
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN---- 338
++ + + + + ++ + G + LK+ A +
Sbjct: 297 ERLKFDNKTIAKVCHLVKNHDRRIEPDYKSVRMAASVIGVESFTDLLKVQEADKKSQNPE 356
Query: 339 --NLTHQDTCFILQVLSDIIHW----KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
N QD I ++ +DII ++GDD+V G GK++G +L
Sbjct: 357 FLNSRLQDLYKITEIYADIIKKTHCLSIKDLQISGDDLVNMGFIQGKEIGYVLNKLLYAI 416
Query: 393 INSSFQLSQEDLHHLLR 409
I+ + DL + +
Sbjct: 417 IDKPELNTYSDLIKIAK 433
>gi|319892449|ref|YP_004149324.1| tRNA nucleotidyltransferase [Staphylococcus pseudintermedius
HKU10-03]
gi|317162145|gb|ADV05688.1| tRNA nucleotidyltransferase [Staphylococcus pseudintermedius
HKU10-03]
Length = 400
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 82/410 (20%), Positives = 160/410 (39%), Gaps = 27/410 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
IL L + ++ VGG+VRD +MN + D+DI T PD + +F IP
Sbjct: 9 AKPILERLIQHGYEAYFVGGSVRDFIMNRPIHDVDITTNATPDEIESLFEH----TIPIG 64
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GTI ++ + +++TT R ++ + R +V F RD D RRDFT+NA+ +
Sbjct: 65 KEHGTINVVWSHENYEVTTFRAEAEYVDHRRPTEVYFVRDLYQDVERRDFTMNAIAMNIN 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ ID+ G D+ R I+ +GDA R ED LRILR RF + G ++ + +
Sbjct: 125 YERIDHFEGERDIEQRIIRTVGDAKTRFDEDALRILRGLRFKSQLGFTIEEATFEAMAHQ 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + + + G + F ++ + L + +
Sbjct: 185 MSDLEYLSIERIMNE--------------LTLLIKGTFVAKTFPILEALQLWRYIPYFKD 230
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF-NCNFNQKTLSIP 311
V KI++ + ++ ++ K L + + Q +
Sbjct: 231 VDVAAIKINAPIDMEAFLAILSYRTNYQAFKSLKLSNAQVRTIQTLISAIQVAQTIDTKV 290
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT-----CFILQVLSDIIHWKKPLFPLT 366
++++ Y +G +V + ++ L N + + V D+ + +
Sbjct: 291 QLQQFTYDFGLEVAVKINELRPILEDNQIDLPSPIIFSSASLQAVWEDLPIQSREDLAID 350
Query: 367 GDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
G ++ + + G + ++L + I E + +R + S
Sbjct: 351 GKWLMQAFQLKGGPWIKDVLRQVECAVIQRQVNNQTEAIIEWVRTHVKIS 400
>gi|194016787|ref|ZP_03055400.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus pumilus ATCC 7061]
gi|194011393|gb|EDW20962.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus pumilus ATCC 7061]
Length = 400
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 84/407 (20%), Positives = 164/407 (40%), Gaps = 20/407 (4%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + H I IL L++ ++ VGGAVRD L+ + DIDIAT PD V +F
Sbjct: 1 MNEPFTH---AIPILHTLHEHGHQAYFVGGAVRDVLLGREIGDIDIATDATPDTVESLFE 57
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDF 122
K + +GT+ ++ +++TT R+ + R +V F K D LRRD
Sbjct: 58 ----KTVDVGKEHGTVIVLHDGVSYEVTTFRTESEYEDFRRPKEVAFITSLKEDLLRRDL 113
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
TINA+ D G++ID+V G D+ + I+ +GD R ED LR++R RF + G +
Sbjct: 114 TINAMAMDIDGEIIDHVEGKKDIERKRIQTVGDPACRFQEDALRMMRAVRFLSQLGFELA 173
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ I + + KLL+ + AI + + +++E+ ++
Sbjct: 174 PETAEAMEKDKRLLANISVERKKIE-MEKLLKGRYCERAIKVLISTKLYEELPGLKKDRL 232
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ ++ + +I ++ +E + +
Sbjct: 233 QESFQSFPYYLLDGLEEV-----WGAVIHLLGLDEAEAVLFL----KEWKLSTKLLKDAV 283
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + + + G+ V+++ LKI H + + + +
Sbjct: 284 AISQYVDCDWDAEKMFEAGEHVLLSSLKISQLKHERRIFFDELEAAKRSYDALPIKTLQD 343
Query: 363 FPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++G D++ + GK + L K+ +++ + +E + L
Sbjct: 344 LAVSGKDLMAFRQKTSGKWIAEELDLVKKAVLHNHLENRKEAIEEWL 390
>gi|323693975|ref|ZP_08108160.1| hypothetical protein HMPREF9475_03023 [Clostridium symbiosum
WAL-14673]
gi|323501975|gb|EGB17852.1| hypothetical protein HMPREF9475_03023 [Clostridium symbiosum
WAL-14673]
Length = 408
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 96/400 (24%), Positives = 165/400 (41%), Gaps = 9/400 (2%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL+ L ++ VGG VRD+L+ D DI T+ P++V ++F K I
Sbjct: 7 KQVEEILAGLRADGYEAFAVGGCVRDTLLGRVPGDWDITTSARPEQVKKVF----GKTID 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVV-FTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++ ++ITT R D + R+ K V FT D K D RRDFTINA+
Sbjct: 63 TGLQHGTVTVMREHVGYEITTYRIDGEYEDARHPKEVAFTSDLKEDLRRRDFTINAMAYS 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D GG+ DL+ ++ +G+A R ED LRILR RF A I+ + A
Sbjct: 123 HETGIVDIFGGMKDLKEGVVRCVGNAVERFTEDALRILRAIRFSAQLNF-TIEDETYAAL 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L +S ERI +E+ K L + +P ++ G +
Sbjct: 182 TVIAPNLANVSKERIQAELTKTLLSDHPERILLVEETGMSPYISAGFHSVFGTNIGRVRE 241
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ LR+ +S+ + + K+ + + + + +
Sbjct: 242 ACMRASGLPARKSLRWAAFLSYGGEDCAAQILKELKMDNDTTDRVKTLVRWFSEELQEDD 301
Query: 311 PEIKKLFYLY--GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+++++ G + LK L T + V S + +TG
Sbjct: 302 CKVREVMSSMEDGRFDELLLLKESLLPEEAAGTGRIRKTAEAVRSRGDCIRMRDMAVTGK 361
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
D++ G+ PG +GNIL + +E L ++
Sbjct: 362 DLIAAGVRPGPDMGNILQRLFLYVLKHPECNEKEYLLNMA 401
>gi|167749856|ref|ZP_02421983.1| hypothetical protein EUBSIR_00824 [Eubacterium siraeum DSM 15702]
gi|167657168|gb|EDS01298.1| hypothetical protein EUBSIR_00824 [Eubacterium siraeum DSM 15702]
Length = 438
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 80/431 (18%), Positives = 154/431 (35%), Gaps = 39/431 (9%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL LN ++ VGG VRD L+ +D D+ T+ LP++++ +F Y+++
Sbjct: 7 VYEILQKLNNNGYEAYCVGGCVRDYLLGQCPEDYDVTTSALPEQIIEVFD--GYRLLTVG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYADQQ 132
+ +GT+ +I K +ITT R D FT + D RRD TINA+ + +
Sbjct: 65 LKHGTVTVIINKHPVEITTYRIDGEYIDHRHPSKVGFTPNLADDLARRDLTINAIAYNDK 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D GG DL+N I+ +GD R ED LRILR RF + YG + +
Sbjct: 125 VGMVDLYGGAEDLKNGIIRCVGDPMKRFDEDGLRILRALRFASRYGFSIDKATSDAIHRQ 184
Query: 193 AKKGLKILSSERIWSEI------NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
I + + + + +
Sbjct: 185 KFLLSFISAERINSELCGILTGDCYDILRNYSDVICEIIPEMYPCIGFEQHSKYHNKTVY 244
Query: 247 SQVIEAEQVFEWKIDSLLRFIVL-------------------ISWQDKKSILSMAKKFSL 287
++ E +++ L ++ + K + ++
Sbjct: 245 GHIVATVAAAEPTVEARLTMLLHDIGKPDSFFMKDGAGHFYGHADVSCKIAEKILERLRF 304
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN-------- 339
+I+ ++ + I I++ YG + + +K+
Sbjct: 305 SNKIKDEVLFLIENHGIVINDDIRSIRRGVARYGAERFLKLIKVHYYDTCGKSPAYFGEK 364
Query: 340 -LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398
L + L + + G D+ + G GK++G L ++ +N + +
Sbjct: 365 ALFDSIEKHTREFLQNEPPMSLKQLKVNGSDISRLGFT-GKEIGKALNFLLEQVVNGNCK 423
Query: 399 LSQEDLHHLLR 409
++ L L+
Sbjct: 424 NDKDSLLALIE 434
>gi|70726456|ref|YP_253370.1| tRNA CCA-pyrophosphorylase [Staphylococcus haemolyticus JCSC1435]
gi|123660233|sp|Q4L6G1|CCA_STAHJ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|68447180|dbj|BAE04764.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 400
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 87/407 (21%), Positives = 163/407 (40%), Gaps = 28/407 (6%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
IL + + ++ VGG+VRD LMN + DIDI T+ PD + IF K IP
Sbjct: 8 QAKPILEKIEQHGFEAYFVGGSVRDYLMNRHIHDIDITTSATPDEIESIFE----KTIPI 63
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+GTI ++ + +++TT R ++ + R ++V F RD K D RRDFTINA+ D+
Sbjct: 64 GREHGTINVVYQGTNYEVTTFRAEAEYVDHRRPSEVYFVRDLKEDLQRRDFTINAIAMDK 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ DY G L IK +GDA R ED LRILR RF +
Sbjct: 124 NFNIYDYFEGDVALNQHIIKTVGDAKERFKEDALRILRGLRFQSQLNFTIEGDTFEAMKH 183
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + + + + G + +L++ +++
Sbjct: 184 QIADVEHLSIERIVVE--------------LKKLIKGQNVSQSYLNLIDLNFFNYVPFFR 229
Query: 252 AEQVFEWKIDSLLRFIVLISW-QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + + K++S + F + I+ + + + + + + +S
Sbjct: 230 SLDMKQTKVNSPISFELWIAILLTVEQTNTSLSDLKISNNEKTKINQYHKIMIEMPQVSS 289
Query: 311 PEIKK-LFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFP 364
E K Y YG +I + I L NN+ + I ++ + +
Sbjct: 290 KEQLKLFVYDYGMNNIIDIIAINSILEDNNIKIASPLIFNLQSIKEIDQHLPIRSRRELN 349
Query: 365 LTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ G D+++ G + +L + + + + +++L +++
Sbjct: 350 INGGDILRITSKKSGPWLKEVLRQIEIDVLTNKVPNLKDELLKWVKE 396
>gi|255101627|ref|ZP_05330604.1| putative poly(A) polymerase [Clostridium difficile QCD-63q42]
gi|255307496|ref|ZP_05351667.1| putative poly(A) polymerase [Clostridium difficile ATCC 43255]
Length = 445
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 102/439 (23%), Positives = 172/439 (39%), Gaps = 50/439 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+ L K ++ IVGG VRD L+ D DI T+ P+ V+ +F K IP
Sbjct: 8 KKVDYIIKELEKNGYEAYIVGGCVRDCLLERVPNDWDITTSARPEVVVELFE----KTIP 63
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + F++TT R D +DGR+ + FT + D RRDFTIN++ +
Sbjct: 64 TGIQHGTVTVMIEHEPFEVTTYRIDGNYSDGRHPDSIEFTNNIVKDLSRRDFTINSIAYN 123
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D G D++N+ I +G+ R ED LR+LR RF A I +
Sbjct: 124 SKTGLVDPFNGYEDIQNKYIHCVGNPVDRFEEDALRMLRAVRFSAQLNF-KIAEGTKQSI 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K +K +S ERI +E NK+L + + + + + G+ K I ++ E+
Sbjct: 183 HKKADLIKNVSIERIQTEFNKILVSDSSK--LNLLKSTGLLKFIIPEICELEDVTQHNPY 240
Query: 251 EAEQVFEWKIDSL------------------------------LRFIVLISWQDKKSILS 280
V + + + + S + K
Sbjct: 241 HIYDVQKHTLIATEAIEDELYLKLTMLFHDLGKKVTKTTDKNGVDHFYTHSRESVKIAKK 300
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK-VMIAKLKIFLALHYNN 339
+ K+ ++ + + IKKL D + +K+ A
Sbjct: 301 ILKRLKYDNYTINKVLILIQYHDYRIEPKRKIIKKLLNKLEDVGLFEDLIKVNWADTLAK 360
Query: 340 LTHQDTCFILQVLSDIIHWKK----------PLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
IL ++ +K + G D++ GI PGK +G IL
Sbjct: 361 NPKYAKQKILNLIECEKEFKHIINQKECFNLKDLAINGKDLISIGIKPGKDIGYILNKML 420
Query: 390 QEWINSSFQLSQEDLHHLL 408
+ IN+ +E L
Sbjct: 421 EIVINNPELNEKEILKEKA 439
>gi|256847161|ref|ZP_05552607.1| tRNA adenylyltransferase [Lactobacillus coleohominis 101-4-CHN]
gi|256715825|gb|EEU30800.1| tRNA adenylyltransferase [Lactobacillus coleohominis 101-4-CHN]
Length = 403
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 95/405 (23%), Positives = 164/405 (40%), Gaps = 18/405 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L + + ++ VGG+VRD+++ ++ DIDIAT+ P + IF K +
Sbjct: 11 EPARPVLQKIEQAGFEAYFVGGSVRDTILGDAIHDIDIATSAYPSEIKAIFK----KTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ I+ ++ TT R++ R +V F R K D RRDFTINAL
Sbjct: 67 TGIQHGTVMILDHGTGYETTTFRTESGYQDYRRPDQVTFVRSLKDDLKRRDFTINALAMK 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G +ID GL DL+ I+ +GD R ED LR++R RF A ID
Sbjct: 127 EDGTIIDLFDGLGDLQRHLIRAVGDPEERFHEDALRMMRAVRFAAKLDF-AIDPATQRGI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQV 249
+ L ++ ERI E +KLL NP + + + L +L +LSQ
Sbjct: 186 EDHGELLTKIAVERIEVEFSKLLLGINPKRGLDYFLTTDLYLYCPRLQHHYQALVKLSQH 245
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ + + ++ L + + + +I S K + L + + +
Sbjct: 246 QDWSSITN-EAEAWLALLYSLQITGQSAISSFMKDWKLSNALISLVQHAMTVLLAIQKDQ 304
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
I + + + G K I A +L + + + + G
Sbjct: 305 IKPM--MLFNAGRKA------ILTASQVAEFEELQHPDLLAMNDQLPIHDRHDLAIDGGA 356
Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
++++ I PG +G ++ + + L + LI
Sbjct: 357 LIRHASIQPGPLLGKVMNQLLALVVEGKVANEEPALLQEAQDLIE 401
>gi|73662596|ref|YP_301377.1| tRNA CCA-pyrophosphorylase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123642619|sp|Q49XR3|CCA_STAS1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|72495111|dbj|BAE18432.1| putative poly-A polymerase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 399
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 90/404 (22%), Positives = 160/404 (39%), Gaps = 25/404 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
IL L ++ VGG+VRD LMN + DIDI T+ PD + +F K IP
Sbjct: 9 AKPILEKLQAHHFQAYFVGGSVRDYLMNRPIHDIDITTSATPDEIETVFD----KTIPIG 64
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GTI +I + + +++TT R D R +V F R+ D RRDFT+NA+ D
Sbjct: 65 REHGTINVIYKGEQYEVTTFRSEGDYDDHRRPNEVFFVRNLYDDVQRRDFTMNAIAMDIN 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++ DY G D++++ I+ +G+ R ED LRI+R RF + +G ++ A +
Sbjct: 125 YQIFDYFEGQQDIKHQLIRTVGNPDERFDEDALRIIRGLRFQSQFGFH-LEEATFTAMLN 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+K L+ ERI E+ KL + ++ + FK +
Sbjct: 184 HIADIKYLAIERIVVELKKLTNGDFVSKSFNNLKHFMAFKY---------IPFFKHYDIT 234
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ F + V ++ I + + + + + +
Sbjct: 235 K--FTLRNAMPFTTFVAFLISQQREIDANIADLKVSNNEKKRIKTLVQLIDQIDEVQTKS 292
Query: 313 IKK-LFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFPLT 366
K Y YG K ++ L L N +T + + +V + + +
Sbjct: 293 QLKLFVYDYGKKDILEVLSYLDELKRNRITSISPLIVNDQTVTEVAKQLPMLSRSEMDIN 352
Query: 367 GDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G D+++ G + L + I+ + +L ++
Sbjct: 353 GKDILEIANKKSGPWLKETLREVEYAIISGEVVNFKPELKKWVK 396
>gi|52143812|ref|YP_083016.1| tRNA CCA-pyrophosphorylase [Bacillus cereus E33L]
gi|73619744|sp|Q63DJ6|CCA_BACCZ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|51977281|gb|AAU18831.1| poly(A) polymerase [Bacillus cereus E33L]
Length = 397
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 87/401 (21%), Positives = 174/401 (43%), Gaps = 15/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++G+ ID G ++ R I +G A R ED LR++R RF + G ++++ A
Sbjct: 121 EEGERIDLFAGQEAIQKREIVTVGTAADRFQEDALRMMRGIRFVSTLGF-SLETKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + + + +F L ++S ++L +
Sbjct: 180 ETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERLLKAT 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ F + ++ S+ KFS + + +K
Sbjct: 238 QYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + H + + + + +TG+D+
Sbjct: 298 V----LLYKTGIHIAEMAERVYEAM-IESYDHTSVERVQTLFQALPIKSRQEMDVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG V ++ ++ + + +E + L++
Sbjct: 353 LNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393
>gi|27573943|pdb|1MIV|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme
gi|27573944|pdb|1MIV|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme
gi|27573945|pdb|1MIW|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme In Complex With Atp
gi|27573946|pdb|1MIW|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme In Complex With Atp
Length = 404
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 90/400 (22%), Positives = 158/400 (39%), Gaps = 14/400 (3%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + I+ L + + VGGAVRD L+ + D+DIAT+ LP+ V IF K I
Sbjct: 7 EALGIIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVXAIFP----KTIDV 62
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+GT+ ++ + K +++TT + D R V F R + D RRDFT NA+ D+
Sbjct: 63 GSKHGTVVVVHKGKAYEVTTFKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTXNAIAXDE 122
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID GG +R R I+ +G+A R ED LR R RF + G + D A +
Sbjct: 123 YGTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRXXRAVRFVSELGF-ALAPDTEQAIV 181
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L +S ER E KLL A+ + G+ + + +L+
Sbjct: 182 QNAPLLAHISVERXTXEXEKLLGGPFAARALPLLAETGLNAYLPGLAGKEKQLRLAAAYR 241
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ + L + + + LP ++ +
Sbjct: 242 WPWLAAREERWALLCHA----LGVQESRPFLRAWKLPNKVVDEAGAIL-TALADIPRPEA 296
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + G + ++ + A + + + + K + G DV+
Sbjct: 297 WTNEQLFSAGLERALSVETVRAAFTGAPPGP-WHEKLRRRFASLPIKTKGELAVNGKDVI 355
Query: 372 KY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++ G P G V L + +N + +E ++ L +
Sbjct: 356 EWVGKPAGPWVKEALDAIWRAVVNGEVENEKERIYAWLXE 395
>gi|323486232|ref|ZP_08091560.1| poly A polymerase [Clostridium symbiosum WAL-14163]
gi|323400450|gb|EGA92820.1| poly A polymerase [Clostridium symbiosum WAL-14163]
Length = 408
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 97/403 (24%), Positives = 168/403 (41%), Gaps = 10/403 (2%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL+ L ++ VGG VRD+L+ D DI T+ P++V ++F K I
Sbjct: 7 KQVEEILAGLRADGYEAFAVGGCVRDTLLGRVPGDWDITTSARPEQVKKVF----GKTID 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVV-FTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++ ++ITT R D + R+ K V FT D K D RRDFTINA+
Sbjct: 63 TGLQHGTVTVMREHVGYEITTYRIDGEYEDARHPKEVAFTSDLKEDLRRRDFTINAMAYS 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D GG+ DL+ ++ +G+A R ED LRILR RF A I+ + A
Sbjct: 123 HETGIVDIFGGMKDLKEGVVRCVGNAVERFTEDALRILRAIRFSAQLNF-TIEDETYAAL 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L +S ERI +E+ K L + +P ++ G +
Sbjct: 182 TVIAPNLANVSKERIQAELTKTLLSDHPERILLVEETGMSPYISAGFHSVFGTNIGRVRE 241
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ LR+ +S+ + + K+ + + + + +
Sbjct: 242 ACMRASGLPARKSLRWAAFLSYGGEDCAAQILKELKMDNDTTDRVKTLVRWFSEELQEDD 301
Query: 311 PEIKKLFYLY--GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+++++ G + LK L T + V S + +TG
Sbjct: 302 CKVREVMSSMEDGRFDELLLLKESLLPEEAAGTGRIRKTAEAVRSRGDCIRMRDMAVTGK 361
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL-LRK 410
D++ G+ PG +GNIL + +E L ++ ++K
Sbjct: 362 DLIAAGVRPGPDMGNILQRLFLYVLKHPECNEKEYLLNMGVKK 404
>gi|15674894|ref|NP_269068.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes M1 GAS]
gi|13622033|gb|AAK33789.1| putative poly(A) polymerase [Streptococcus pyogenes M1 GAS]
Length = 397
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 96/402 (23%), Positives = 180/402 (44%), Gaps = 16/402 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF+ + +
Sbjct: 8 ALPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFN----RTVDVG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 64 IEHGTVLVLENGGEYEITTFRTEDIYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL DL+ + ++ +G A R ED LRI+R FRF A +I++ A
Sbjct: 124 GQVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASLDF-DIEAITFEAMRS 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER ++E +KLL A + I M + + Q+ + L+ +I +
Sbjct: 183 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAG--LNHLIVS 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ D + ++ + S K + + + ++ ++ S +
Sbjct: 241 LKDNFTFSDYHQAWAYVMISLAIEDPKSFLKAWKTSNDFQRYVTKLIALYRIRQERSFEK 300
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ Y YG K+ + L D I + ++ K L G ++K
Sbjct: 301 L--DIYQYGKKMA----SLVEDLRKAQSLSVDMDRINTLDQALVIHDKHDIVLNGSHLIK 354
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+G+ G ++G +L + + + +R+ +A
Sbjct: 355 DFGMKSGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELA 396
>gi|291531026|emb|CBK96611.1| uncharacterized domain HDIG [Eubacterium siraeum 70/3]
Length = 438
Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats.
Identities = 80/431 (18%), Positives = 151/431 (35%), Gaps = 39/431 (9%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L LN ++ VGG VRD L+ +D D+ T+ LP++++ +F Y+++
Sbjct: 7 VYEVLQKLNNNGYEAYCVGGCVRDYLLGQCPEDYDVTTSALPEQIIEVFD--GYRLLTVG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYADQQ 132
+ +GT+ +I K +ITT R D FT + D RRD TINA+ + +
Sbjct: 65 LKHGTVTVIINKHPVEITTYRIDGEYIDHRHPSKVGFTPNLADDLARRDLTINAIAYNDK 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D GG DL+N I+ +GD R +D LRILR RF + YG +
Sbjct: 125 VGMVDLYGGAEDLKNGIIRCVGDPMKRFDDDGLRILRALRFASRYGFSIDKETSDAIHRQ 184
Query: 193 AKKGLKILSSERIWSEI------NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
I + + + +
Sbjct: 185 KFLLSFISAERINSELCGILTGDCYDILRNYSDVICEIIPEMYPCIGFEQHSKYHDKTVY 244
Query: 247 SQVIEAEQVFEWKIDSLLRFIVL-------------------ISWQDKKSILSMAKKFSL 287
+ E +++ L ++ + K + ++
Sbjct: 245 GHIAATVAAAEPTVEARLTMLLHDIGKPDSFFMKDGAGHFYGHADVSCKIAEKILERLRF 304
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN-------- 339
+I+ ++ + I I++ YG + I +K+
Sbjct: 305 SNKIKDEVLFLIENHGIVINDDIRSIRRGVARYGAERFIKLIKVHYYDTCGKSPAYFGEK 364
Query: 340 -LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398
L + L + + G D+ K G GK++G L ++ +N + +
Sbjct: 365 ALFDSIEKHTREFLQNEPPMSLKQLKVNGSDISKLGFT-GKEIGQALNFLLEQVVNGNCE 423
Query: 399 LSQEDLHHLLR 409
++ L L+
Sbjct: 424 NDKDSLLALIE 434
>gi|238916042|ref|YP_002929559.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Eubacterium
eligens ATCC 27750]
gi|238871402|gb|ACR71112.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Eubacterium
eligens ATCC 27750]
Length = 417
Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats.
Identities = 93/415 (22%), Positives = 170/415 (40%), Gaps = 23/415 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ NI+ + + K+ VGG +RDS++ + D DI T+ +P ++ F + +
Sbjct: 11 EAVRNIIHTIEEHGFKAYAVGGCIRDSILGRNPDDWDITTSAVPSQIKTFFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130
T I++GT+ I+ K +++TT R D DGR+ K V F+ D RRDFTINA+ +
Sbjct: 67 TGIAHGTVTIMIDKTGYEVTTYRIDGEYEDGRHPKSVEFSDRLVDDLCRRDFTINAMAYN 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+D GL+DL + I+ +G+ R ED LR++R RF A G ID A
Sbjct: 127 DTDGFVDEFNGLDDLDAKIIRCVGEPELRFTEDALRMMRAIRFSAQLGF-TIDEATWNAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K + +S ER+ E+ K L + +P Y+ E L V + SL +
Sbjct: 186 KKLAPSISKISMERVHVELGKTLMSAHPDYVAQ--YSEAGLFEPILPVIDNSLKSRYKRK 243
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + LR+ L + L + + + +
Sbjct: 244 ILATLQHTPDNIYLRYAALFIASTPDEAAKTLRALKLDNKTVDTVSKLVKLSKIDIEETE 303
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNL------THQDTCFIL-------QVLSDIIH 357
P ++ YG + ++ +A+ + +L +L+
Sbjct: 304 PAVRTALNQYGRDFLPLWHELMMAVIQASEDITGISNPAKVKHLLTLKRLGTDILARGDC 363
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ ++G+D+++YG+ G ++G L I + + L ++ +
Sbjct: 364 FTIKALDISGNDLIEYGLQ-GHEIGETLKSLLDIVIENPKLNDKATLIAMIEHIK 417
>gi|242242738|ref|ZP_04797183.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis W23144]
gi|242233874|gb|EES36186.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis W23144]
Length = 400
Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats.
Identities = 101/403 (25%), Positives = 165/403 (40%), Gaps = 20/403 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + K+ VGG+VRD +M + D+DI T+ +PD + IF K IP
Sbjct: 7 KQAKPILKKIQNNGFKAYFVGGSVRDYIMQRPIHDVDITTSAMPDEIESIFD----KTIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + ++ITT RS + I R ++V F RD D RRDFT+NA+ D
Sbjct: 63 VGKEHGTINVVFQNDNYEITTFRSEDEYINHRRPSEVYFVRDLYQDVQRRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++ DY G D++NR I+ +G R ED LRI+R RF + + IDSD L A
Sbjct: 123 LNYQLYDYFNGQQDIKNRVIRTVGVPSERFSEDALRIIRGLRFQSQLNFQ-IDSDTLQAM 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
++ LS ER+ E+ KL+ N + M N F +
Sbjct: 182 SSHISDIQYLSVERVVVELKKLIMGNNVKQSFEVMQNMKAFNY---------IPFFKSFE 232
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + I L +LI Q K LS K + + I+ ++
Sbjct: 233 MSHLHIDEPITFELWIAILIVQQPKDVQLSSLKISNQEKATIKKWITLIQTLPKIQSKQS 292
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLA---LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
Y D ++ L L L N + I + + + + G
Sbjct: 293 LITLVYDYNLKDIEILLSLHHLLKQNGLTTANQLIINEISIREANKKLPIHCRKELAING 352
Query: 368 DDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D++ + G + + L + I++ ++E++ +
Sbjct: 353 KDILNHTNKNSGPWLKDTLREIEIAVISNQIANTKEEILEWVD 395
>gi|152975060|ref|YP_001374577.1| tRNA CCA-pyrophosphorylase [Bacillus cereus subsp. cytotoxis NVH
391-98]
gi|189081870|sp|A7GN74|CCA_BACCN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|152023812|gb|ABS21582.1| Polynucleotide adenylyltransferase region [Bacillus cytotoxicus NVH
391-98]
Length = 397
Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats.
Identities = 87/401 (21%), Positives = 179/401 (44%), Gaps = 15/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM++F K +P
Sbjct: 5 KRAGAIIETLKEHGHEAYFVGGSVRDFIIDRPIGDIDIATSALPEEVMKLFPKH----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ D R + V F R + D RRDFT+NA+ +
Sbjct: 61 VGLEHGTVIVLQDGEPYEVTTFRTESDYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMN 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G++ID GG ++ R I +G+A R ED LR++R RF + G +++ A
Sbjct: 121 EDGEIIDLFGGQEAIQKREIVTVGNAAERFQEDALRMMRGIRFVSTLGF-SLEEKTECAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L+ ++ ERI E KLL + + + +F + +Q L
Sbjct: 180 KRYGHLLEHIAIERITVEFEKLLTGPYCVKGLQKLVETKLFMHL-PYLQMSEEKILKAAE 238
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ FE +I++ F+ I + L + ++I+ + + +
Sbjct: 239 YNWESFETEIEAWAFFLSCIGEEHPSVFLR--QWKFSNKKIKEIVAVLLAIRTRK---TK 293
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
Y G ++ + +++ + + ++ + K+ ++G+D+
Sbjct: 294 EWDAVFLYQTGVQIALMAERVYQVM-IEEYNMSTVSEVQRLFDSLPIQKRQEMNVSGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG V +L ++E + + +E + + +
Sbjct: 353 LSWTDKTPGPWVAEVLQKIEEEILQKRLENEKEAIRGWIEE 393
>gi|30261632|ref|NP_844009.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Ames]
gi|47526833|ref|YP_018182.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184463|ref|YP_027715.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Sterne]
gi|49477261|ref|YP_035752.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|165869330|ref|ZP_02213989.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. A0488]
gi|167633263|ref|ZP_02391588.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. A0442]
gi|167639160|ref|ZP_02397433.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. A0193]
gi|170706553|ref|ZP_02897013.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. A0389]
gi|177650452|ref|ZP_02933419.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. A0174]
gi|190568682|ref|ZP_03021587.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis Tsiankovskii-I]
gi|196033458|ref|ZP_03100870.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus W]
gi|196039035|ref|ZP_03106342.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus NVH0597-99]
gi|218902747|ref|YP_002450581.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus AH820]
gi|227815617|ref|YP_002815626.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. CDC 684]
gi|229602549|ref|YP_002866039.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. A0248]
gi|254683124|ref|ZP_05146985.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. CNEVA-9066]
gi|254723712|ref|ZP_05185498.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. A1055]
gi|254734472|ref|ZP_05192184.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Western North
America USA6153]
gi|254740884|ref|ZP_05198572.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Kruger B]
gi|254755122|ref|ZP_05207156.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Vollum]
gi|254759659|ref|ZP_05211683.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Australia 94]
gi|73619738|sp|Q81ST6|CCA_BACAN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|73619747|sp|Q6HL19|CCA_BACHK RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|226702035|sp|B7JH21|CCA_BACC0 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|254813684|sp|C3P5Q6|CCA_BACAA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|254813685|sp|C3L8Q3|CCA_BACAC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|30255860|gb|AAP25495.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. Ames]
gi|47501981|gb|AAT30657.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. 'Ames Ancestor']
gi|49178390|gb|AAT53766.1| polyA polymerase [Bacillus anthracis str. Sterne]
gi|49328817|gb|AAT59463.1| poly(A) polymerase [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|164714770|gb|EDR20288.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. A0488]
gi|167512950|gb|EDR88323.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. A0193]
gi|167531301|gb|EDR93979.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. A0442]
gi|170128651|gb|EDS97518.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. A0389]
gi|172083596|gb|EDT68656.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. A0174]
gi|190560282|gb|EDV14262.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis Tsiankovskii-I]
gi|195993892|gb|EDX57848.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus W]
gi|196030180|gb|EDX68780.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus NVH0597-99]
gi|218538455|gb|ACK90853.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus AH820]
gi|227007135|gb|ACP16878.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. CDC 684]
gi|229266957|gb|ACQ48594.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. A0248]
Length = 397
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 86/401 (21%), Positives = 176/401 (43%), Gaps = 15/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A
Sbjct: 121 EEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + + + +F L ++S ++L +
Sbjct: 180 ETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERLLKAT 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ F + ++ S+ KFS + + +K
Sbjct: 238 QYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + H + + + + +TG+D+
Sbjct: 298 V----LLYKTGIHIAEMAERVYEAM-IESYDHTSVERVQTLFQALPIKSRQEMDVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG V ++ ++ + + +E + L++
Sbjct: 353 LNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393
>gi|325264322|ref|ZP_08131053.1| polyA polymerase [Clostridium sp. D5]
gi|324030393|gb|EGB91677.1| polyA polymerase [Clostridium sp. D5]
Length = 444
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 90/438 (20%), Positives = 176/438 (40%), Gaps = 48/438 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+I I++ L ++ VGG VRDS++ +D DI T+ P+ + R+F + + T
Sbjct: 9 VIMIINNLQLHGYEAFAVGGCVRDSILCRKPEDWDITTSARPEEIKRLFR----RTVDTG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ F++TT R D + + R+ K FT + D RRDFTINA+ + +
Sbjct: 65 IEHGTLTVMIGREGFEVTTYRVDGLYEDSRHPKDVTFTTSLEEDLRRRDFTINAMAYNDE 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+++D GG+ DL + I+ +GD R ED LRILR RF A +
Sbjct: 125 VRLVDVFGGMKDLNHHLIRCVGDPAERFSEDALRILRAVRFSAQLAFPIEKNTAQAVREL 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
A I + + L+ + I Y GI K I + + + +
Sbjct: 185 APTLKNISAERIQVELVKLLMSDHP--DLIQDAYELGITKIILPEWDAMVGVEQNTRHHK 242
Query: 253 EQVFEW--------KIDSLLRFIVLISWQDKKS----------------------ILSMA 282
V K D +LR +L K S S+
Sbjct: 243 YDVAGHTLHALKNVKKDKILRLTMLFHDMGKPSMKTTDEKGVDHFKGHALVSEEIARSVL 302
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
++ + + + + + +++ G ++ L + +A +
Sbjct: 303 RRLKFDNDTVKKVTRLVCYHDYRIEATPQNVRRAMNRIGVELFPYYLAVRMADVKAQSPY 362
Query: 343 QDTCFI------LQVLSDIIHWKK----PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
+ I ++ + + ++G D++K G+ PG+++G++L +
Sbjct: 363 RRRAKIENIVAMRELYQETLINDHCVTLRQLAVSGRDLMKLGMQPGRQMGDMLNELLELV 422
Query: 393 INSSFQLSQEDLHHLLRK 410
++ +E L + +++
Sbjct: 423 LDEPEMNEKEKLCNYVKE 440
>gi|126700083|ref|YP_001088980.1| putative poly(A) polymerase [Clostridium difficile 630]
gi|115251520|emb|CAJ69353.1| putative tRNA-nucleotidyltransferase/Poly(A) polymerase family
member [Clostridium difficile]
Length = 448
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 102/439 (23%), Positives = 173/439 (39%), Gaps = 50/439 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+ L K ++ IVGG VRD L+ D DI T+ P+ V+ +F K IP
Sbjct: 11 KKVDYIIKELEKNGYEAYIVGGCVRDCLLERVPNDWDITTSARPEVVVELFE----KTIP 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + F++TT R D +DGR+ + FT + D RRDFTIN++ +
Sbjct: 67 TGIQHGTVTVMIEHEPFEVTTYRIDGNYSDGRHPDSIEFTNNIVKDLSRRDFTINSIAYN 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D G D++N+ I+ +G+ R ED LR+LR RF A I +
Sbjct: 127 SKTGLVDPFNGYEDIQNKYIRCVGNPVDRFEEDALRMLRAVRFSAQLNF-KIAEGTKQSI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K +K +S ERI +E NK+L + + + + + G+ K I ++ E+
Sbjct: 186 HKKADLIKNVSIERIQTEFNKILVSDSSK--LNLLKSTGLLKFIIPEICELEDVTQHNPY 243
Query: 251 EAEQVFEWKIDSL------------------------------LRFIVLISWQDKKSILS 280
V + + + + S + K
Sbjct: 244 HIYDVQKHTLIATEVIEDELYLKLTMLFHDLGKKVTKTTDKNGVDHFYTHSRESVKIAKK 303
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK-VMIAKLKIFLALHYNN 339
+ K+ ++ + + IKKL D + +K+ A
Sbjct: 304 ILKRLKYDNYTINKVLILIQYHDYRIEPKRKIIKKLLNKLEDVGLFEDLIKVNWADTLAK 363
Query: 340 LTHQDTCFILQVLSDIIHWKK----------PLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
IL ++ +K + G D++ GI PGK +G IL
Sbjct: 364 NPKYAKQKILNLIECEKEFKHIINQKECFNLKDLAINGKDLISIGIKPGKDIGYILNKML 423
Query: 390 QEWINSSFQLSQEDLHHLL 408
+ IN+ +E L
Sbjct: 424 EIVINNPELNEKEILKEKA 442
>gi|154505528|ref|ZP_02042266.1| hypothetical protein RUMGNA_03065 [Ruminococcus gnavus ATCC 29149]
gi|153794186|gb|EDN76606.1| hypothetical protein RUMGNA_03065 [Ruminococcus gnavus ATCC 29149]
Length = 444
Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats.
Identities = 96/435 (22%), Positives = 164/435 (37%), Gaps = 48/435 (11%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
I+ L + + VGG VRDS++N +D DI T+ P++V RIF + + T I +
Sbjct: 12 IIKNLQRHGYDAYAVGGCVRDSILNRKPEDWDITTSAKPEQVKRIFR----RTVDTGIEH 67
Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYAKV-VFTRDWKADSLRRDFTINALYADQQGKV 135
GT+ ++ K F++TT R D DGR+ K FT + D RRDFTINA+ + ++
Sbjct: 68 GTVTVLIGKDGFEVTTYRVDGLYEDGRHPKEVTFTSRLEEDLKRRDFTINAMAYNDDERL 127
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
+D GG+ DL I+ +GD R ED LRILR RF A A
Sbjct: 128 VDAFGGMRDLNYHLIRCVGDPKERFSEDALRILRAVRFSAQLAFPIEPETAEAIKSLAPN 187
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
KI + + L+ I GI K + + ++ + + V
Sbjct: 188 LEKISAERIQAELVKLLVSDHPER--IQDACELGITKVVLPEWDDMVGVKQNTPHHKYDV 245
Query: 256 FEW--------KIDSLLRFIVLISWQDK----------------------KSILSMAKKF 285
K D +LR +L K + ++ K+
Sbjct: 246 AAHTVHALQNVKNDKVLRLTMLFHDMGKPVMKTTDENGRDHFKGHAIASEQIAKTVMKRL 305
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD- 344
+ + + + + +++ + G ++ L + LA +++
Sbjct: 306 KFDNDTIRKVTKLVAYHDYRMEPTGANVRRAMHEIGVELFPYYLAVRLADTKAQSSYERR 365
Query: 345 ---------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
L + +TG D++ GI PGK++G +L I
Sbjct: 366 GKLENIIQIRELYRNALRNKECVTLKDLAVTGTDLINLGIAPGKELGTLLNELLDMVIED 425
Query: 396 SFQLSQEDLHHLLRK 410
+ L +++
Sbjct: 426 PAWNQKGKLCDYVKE 440
>gi|206970696|ref|ZP_03231648.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus AH1134]
gi|206734332|gb|EDZ51502.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus AH1134]
Length = 397
Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats.
Identities = 87/400 (21%), Positives = 175/400 (43%), Gaps = 15/400 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++GK++D G ++ R I +G+A R ED LR++R RF + G +++ A
Sbjct: 121 EEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLEMKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + + + +F L ++S ++L +
Sbjct: 180 ETHGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERLLKAT 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + F + ++ S+ KFS + + +K
Sbjct: 238 QYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLAIRTRKEKDWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + + + + ++ +TG+D+
Sbjct: 298 V----LLYKTGIHIAEMAERVYEAM-IESYDPTSVERVQLMFHALPIQERQEMNVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ + PG V +L ++ + + +E + L+
Sbjct: 353 LNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 392
>gi|311068759|ref|YP_003973682.1| tRNA CCA-pyrophosphorylase [Bacillus atrophaeus 1942]
gi|310869276|gb|ADP32751.1| tRNA CCA-pyrophosphorylase [Bacillus atrophaeus 1942]
Length = 397
Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats.
Identities = 94/398 (23%), Positives = 167/398 (41%), Gaps = 16/398 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L+ L + ++ VGGAVRDS M ++ D+DIAT P+ V R+F + +
Sbjct: 8 ALPVLNTLIEAGHQAYFVGGAVRDSYMKRAIGDVDIATDAAPNEVERLFK----RTVDVG 63
Query: 75 ISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GTI ++ + +++TT R+ D R ++V F + D RRDFTINA+
Sbjct: 64 KEHGTIIVLWEDETYEVTTFRTESDYQDYRRPSEVHFITSLEEDLKRRDFTINAMAMKTD 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++IDY GG D+ ++ I+ +G R ED LR+LR RF + G + + +
Sbjct: 124 GELIDYFGGRQDIDHQLIRTVGKPEDRFQEDALRMLRAIRFMSQLGF-ALSEETAATIER 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
++ L+ +S ER E KLL+ K+ +A+ M E + L
Sbjct: 183 SRSLLRYVSVERKTVEFEKLLQGKSCSSALR-MMVKTGLFEELPGFSDKKEHLLYASECP 241
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ + + +V + K+ + K + I+ LS
Sbjct: 242 FSLLTEREELWTAILVYLKISAKEQTPFLKKWKLPGKVIKEASRIADTFYQELDALS--- 298
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G+K +I+ +KI + + + + + + +TG D++
Sbjct: 299 ----MYQAGEKALISAVKIKMLSETKQVDKEKLEAVRKEYRSLPIKSLKDLDITGQDLLN 354
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
P GK V L +Q + ++ L L+
Sbjct: 355 VRNRPAGKWVSEELQRIEQAVVTGKLSNQKKHLEEWLK 392
>gi|242373766|ref|ZP_04819340.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis M23864:W1]
gi|242348503|gb|EES40105.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis M23864:W1]
Length = 404
Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats.
Identities = 92/403 (22%), Positives = 164/403 (40%), Gaps = 24/403 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
IL+ + + ++ VGG+VRD LM + DIDI T+ PD + IF K IP
Sbjct: 13 AKPILNQIQQHGFEAYYVGGSVRDYLMGREIHDIDITTSATPDEIEDIFD----KTIPIG 68
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GTI ++ + +++TT R D + R ++V F RD D RRDFTINA+ D
Sbjct: 69 KEHGTINVVYNDENYEVTTFRAEEDYVDHRRPSEVHFVRDLYQDVQRRDFTINAIAMDTN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
DY G +D++ + I+ +G A R ED LRI+R RF + + I ++ A
Sbjct: 129 YNTYDYFDGEDDIKAKQIRTVGVARERFEEDALRIIRGLRFQSQLNFQ-IVNETFEAMAT 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
++ LS ERI E+ KL+ N + +M F +
Sbjct: 188 QISDIQYLSIERIVVELKKLINGINVSESFKNMKEIQAFNY---------IPFFKAFNMN 238
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ + + ++++ Q + L K +L + ++ K S +
Sbjct: 239 KVFINEPLSFEIWIALMLAQQPIEDSLKALKISNLEKSNIQNFVNLIK--ILPKVESKQD 296
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF-----ILQVLSDIIHWKKPLFPLTG 367
+ + Y Y + L L N L + I + + + + + G
Sbjct: 297 LITVVYDYNLSDIECVLTANDTLKENGLEIANPLIINATSIKETDAQLPIHTRKEMDVNG 356
Query: 368 DDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D++K + G + ++L + I ++ ++ +
Sbjct: 357 GDIIKHLQVKSGPWLKDVLRQIELAIITQQMNNTKLEILEWVD 399
>gi|65318901|ref|ZP_00391860.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Bacillus
anthracis str. A2012]
Length = 400
Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats.
Identities = 86/401 (21%), Positives = 176/401 (43%), Gaps = 15/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 8 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VP 63
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 64 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 123
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A
Sbjct: 124 EEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKTKQAI 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + + + +F L ++S ++L +
Sbjct: 183 ETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERLLKAT 240
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ F + ++ S+ KFS + + +K
Sbjct: 241 QYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 300
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + H + + + + +TG+D+
Sbjct: 301 V----LLYKTGIHIAEMAERVYEAM-IESYDHTSVERVQTLFQALPIKSRQEMDVTGNDL 355
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG V ++ ++ + + +E + L++
Sbjct: 356 LNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 396
>gi|289435254|ref|YP_003465126.1| polyA polymerase [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171498|emb|CBH28042.1| polyA polymerase [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 393
Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats.
Identities = 82/399 (20%), Positives = 156/399 (39%), Gaps = 19/399 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IFS
Sbjct: 6 KRALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKTIFSS----TFD 61
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I++GT+ + + +++TT R++ R ++V F R + D LRRDFT+NA+ D
Sbjct: 62 TGIAHGTVTVRENGECYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLLRRDFTMNAIAMD 121
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++ ++ D G ++N+ IK +G A R ED LR++R RF +
Sbjct: 122 EKFQLHDPFSGRISIQNKEIKAVGKAQERFHEDALRMMRAIRFLSQLDFHLEKETEAALQ 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ + + + + L + +L + +
Sbjct: 182 SQIALLQHTSVERITVEWVKMIKGPAVKRAMDLLLKVEMENFLPGLKGKASALKEFASWD 241
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
++ E I L V S ++ + K + LP + + + N+K +
Sbjct: 242 WEKRTTENAIWLGLVTTVQPS-----NVTTFLKAWKLPNKTIQLVGKTYQYALNKKQVWS 296
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G V +I + + N + + + K +TG D+
Sbjct: 297 AD---ELYHAGVDVFSLVNEINVIQYGEN----QQETLNRAYQALPIHSKKDLAITGADL 349
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+K+ G + L ++ I + + + L
Sbjct: 350 LKWSNEQAGPWMKETLEKIERAVILEEIENEKNQIRRWL 388
>gi|326692490|ref|ZP_08229495.1| polynucleotide adenylyltransferase [Leuconostoc argentinum KCTC
3773]
Length = 401
Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats.
Identities = 87/402 (21%), Positives = 152/402 (37%), Gaps = 18/402 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L L ++ VGG+VRD L+ + D+DIA+ P+ V + F K +
Sbjct: 11 EAAKPVLQRLEAAGFEAYFVGGSVRDMLLQKPIHDVDIASAAFPEEVKKQFD----KTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ ++ITT R++ R V F R D RRDFTINAL
Sbjct: 67 TGIQHGTVMVLDHGLGYEITTFRTESTYTDFRRPDTVTFVRSLSEDLQRRDFTINALAMT 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G+++D GL DL I+ +G+A R ED LR++R RF A G + I D A
Sbjct: 127 YDGEIVDLFDGLADLSAGVIRAVGEAEVRFTEDALRMMRALRFSAQLGFQ-IAPDTRAAL 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L ++ ERI E KLL + ++ + + + + Q + +I
Sbjct: 186 QRLAPNLAKIAVERIRVEFEKLLMGQQAAASLAMAIEDDVVTYLPGQLDQW---QFADII 242
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + ++ +L +S ++ + + +
Sbjct: 243 ADLKTQQPATIPVVWAHLLTRSTLSESEMTTFMRTWKTSRDLIKMATAVVPVARHIARRD 302
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
Y Y D +M I + + + + G +
Sbjct: 303 LWTLYQIYDYRDVLMSVLRLIRTDDAV-------IADVDAMFEALPIHHTRELRVAGGQL 355
Query: 371 VKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+ I PG ++G IL ++ + L ++L
Sbjct: 356 IAEQIVQPGPQMGRILKQIERAVVTGQVANQPAALLAYAKEL 397
>gi|71910486|ref|YP_282036.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS5005]
gi|73619883|sp|Q9A0A5|CCA_STRP1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|71853268|gb|AAZ51291.1| poly(A) polymerase/tRNA nucleotidyltransferase [Streptococcus
pyogenes MGAS5005]
Length = 402
Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats.
Identities = 102/403 (25%), Positives = 181/403 (44%), Gaps = 18/403 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF+ + +
Sbjct: 13 ALPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFN----RTVDVG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDIYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL DL+ + ++ +G A R ED LRI+R FRF A +I++ A
Sbjct: 129 GQVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASLDF-DIEAITFEAMRS 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQLSQVIE 251
L+ +S ER ++E +KLL A + I M + L QE L+ L ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIVSLK 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + ++ ++ +D KS L K + + LI+ + + +
Sbjct: 248 DNFTFSDYHQAWAYVMISLAIEDPKSFLKAWKTSNDFQRYVTKLIALYRIRQERSFEKL- 306
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y YG K+ + L D I + ++ K L G ++
Sbjct: 307 ----DIYQYGKKMA----SLVEDLRKAQSLSVDMDRINTLDQALVIHDKHDIVLNGSHLI 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
K +G+ G ++G +L + + + +R+ +A
Sbjct: 359 KDFGMKSGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELA 401
>gi|291557511|emb|CBL34628.1| uncharacterized domain HDIG [Eubacterium siraeum V10Sc8a]
Length = 438
Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats.
Identities = 79/431 (18%), Positives = 150/431 (34%), Gaps = 39/431 (9%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L LN ++ VGG VRD L+ +D D+ T+ LP++++ +F Y+++
Sbjct: 7 VYEVLQKLNNNGYEAYCVGGCVRDYLLGQCPEDYDVTTSALPEQIIEVFD--GYRLLKVG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYADQQ 132
+ +GT+ +I K +ITT R D FT + D RRD TINA+ + +
Sbjct: 65 LKHGTVTVIINKHPVEITTYRIDGEYTDHRHPSKVGFTPNLADDLARRDLTINAIAYNDK 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D GG DL+N I+ +GD R ED LRILR RF + YG +
Sbjct: 125 VGMVDLYGGAEDLKNGIIRCVGDPMKRFDEDGLRILRALRFASRYGFSIDKETSDAIHRQ 184
Query: 193 AKKGLKILSSERIWSEI------NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
I + + + +
Sbjct: 185 KFLLSFISAERINSELCGILTGDCYDILRNYSDVICEIIPEMYPCIGFEQHSKYHDKTVY 244
Query: 247 SQVIEAEQVFEWKIDSLLRFIVL-------------------ISWQDKKSILSMAKKFSL 287
+ E +++ L ++ + K + +
Sbjct: 245 GHIAATVAAAEPTVEARLTMLLHDIGKPDSFFMKDGAGHFYGHADVSCKIAEKILVRLRF 304
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN-------- 339
+I+ ++ + I I++ YG + + +K+
Sbjct: 305 SNKIKDEVLFLIENHGIVINDDIRSIRRGVARYGAERFLKLIKVHYYDTCGKSPAYFGEK 364
Query: 340 -LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398
L + L + + G D+ + G GK++G L ++ +N + +
Sbjct: 365 ALFDSIEKHTREFLQNEPPISLKQLKVNGSDISRLGFT-GKEIGKALNFLLEQVVNGNCE 423
Query: 399 LSQEDLHHLLR 409
++ L L+
Sbjct: 424 NDKDSLLALIE 434
>gi|314933641|ref|ZP_07841006.1| polyA polymerase [Staphylococcus caprae C87]
gi|313653791|gb|EFS17548.1| polyA polymerase [Staphylococcus caprae C87]
Length = 400
Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats.
Identities = 96/403 (23%), Positives = 166/403 (41%), Gaps = 24/403 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
IL + ++ VGG+VRD LM + DIDI T+ P+ + IF K IP
Sbjct: 9 AKPILDHIQHHGFEAYFVGGSVRDYLMGREIHDIDITTSATPNEIEDIFE----KTIPIG 64
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GTI ++ + +++TT R D + R ++V F RD D RRDFT+NA+ D
Sbjct: 65 KEHGTINVVYHHENYEVTTFRAEEDYVDHRRPSEVHFVRDLYQDVQRRDFTVNAIAMDSN 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
K DY G DL+ R I+ +G+ R ED LRI+R RF A I + A K
Sbjct: 125 YKTYDYFEGERDLKERLIRTVGEPRERFEEDALRIIRGLRFQAQLDF-KIVDNTFDAMRK 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
++ LS ERI E+ KL++ N + M FK + +
Sbjct: 184 QIADIQYLSIERIVVELKKLIKGINVAQSFNQMKEIDAFKH---------IPFFNSFNMQ 234
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ ++ + ++++ Q L + K + + + L + K S +
Sbjct: 235 RVHIDEPLEFEMWIAIMLAQQPITDTLKLLKISNNEKSKIHTLANLIET--LPKVQSKSD 292
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFPLTG 367
+ + Y K + L L NNL + I +V + + + + G
Sbjct: 293 LIIVIYDNDIKNIKNVLATKETLKKNNLNTPNPLILNERSIEEVYNQLPIHHRKEMAING 352
Query: 368 DDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D+++ G + ++L + I + ++ ++ +
Sbjct: 353 GDIIQHLNTKSGPWLKDVLRQIEVAIITKQIKNTKVEILEWVD 395
>gi|291460610|ref|ZP_06600000.1| CCA-adding enzyme [Oribacterium sp. oral taxon 078 str. F0262]
gi|291416801|gb|EFE90520.1| CCA-adding enzyme [Oribacterium sp. oral taxon 078 str. F0262]
Length = 441
Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats.
Identities = 101/425 (23%), Positives = 182/425 (42%), Gaps = 40/425 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+ L ++ VGG VRDSL+ + +D DI ++ P+ + R+F + +
Sbjct: 26 DGVQRIIGRLESAGFEAYAVGGCVRDSLLGRTPEDWDITSSARPEELKRLFK----RTVD 81
Query: 73 TSISYGTIKIICRK-------KYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFT 123
T I +GT+ ++ + F++T+ R D DGR+ + V FT D RRDFT
Sbjct: 82 TGIQHGTVTVLIGGGEGGKRAQAFEVTSYRVDGEYKDGRHPESVRFTPSLSEDLSRRDFT 141
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
INA+ +++ ++D G+ DL R I+ +G+A R ED LR+LR RF A I
Sbjct: 142 INAMAYNEKSGIVDLFQGMEDLERREIRAVGEAELRFREDALRMLRALRFSAQL-RFRIA 200
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN--GGIFKEIFLDVQEI 241
L A +GL +S ERI E+ KLL + +P + E F ++
Sbjct: 201 PGTLEAVRSLARGLSRVSKERIRGELTKLLLSDSPEQMELVFQTGLAPYVSEHFPEIASP 260
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
SL +LS +E E W ++ ++ + ++ + R S
Sbjct: 261 SLPELSGDMEREAFLRW---------GMLLRGREQLAKRILRELKMDRATIDRAGSIAAL 311
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------------- 348
+ + PE ++L YG+++ + L + AL + ++
Sbjct: 312 HGERIPEEAPEARRLLSRYGEELFFSWLSMEEALALHFPREREAPLPGERSQGKIRRARA 371
Query: 349 --LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
++L + + G+D+ + GIP G + +L E + + +E L
Sbjct: 372 LGEEILKNGDCLSLSALMINGEDLAELGIPRGPEYSAVLRALLSEVLEDPKRNRREYLRK 431
Query: 407 LLRKL 411
++++
Sbjct: 432 RVKEI 436
>gi|317489811|ref|ZP_07948308.1| poly A polymerase head domain-containing protein [Eggerthella sp.
1_3_56FAA]
gi|325829889|ref|ZP_08163347.1| tRNA adenylyltransferase [Eggerthella sp. HGA1]
gi|316911060|gb|EFV32672.1| poly A polymerase head domain-containing protein [Eggerthella sp.
1_3_56FAA]
gi|325488056|gb|EGC90493.1| tRNA adenylyltransferase [Eggerthella sp. HGA1]
Length = 465
Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats.
Identities = 96/443 (21%), Positives = 161/443 (36%), Gaps = 50/443 (11%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
L L ++ IVGG VRD+L+ DIDIAT V R+F Y+ T ++G
Sbjct: 23 LDALENAGFETWIVGGYVRDALLGRPSSDIDIATQAHWQDVQRVFEGQGYRTHETGTAHG 82
Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYADQQGKVI 136
T+ +I ++ ++TT RSD + D RRDFT+NAL +
Sbjct: 83 TLTVIVDEQALEVTTYRSDGAYADARHPNQVSFVRTIAEDLARRDFTMNALAYHPARGLF 142
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
D GG DL R I+ +GD R ED LR+LR RF A G ID + + K
Sbjct: 143 DPYGGHADLEARIIRAVGDPDRRFSEDALRMLRACRFAAELGF-AIDPNTFEGMLANKGL 201
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
L +S+ERI E+ +LL ++ A+ + + ++ + + V
Sbjct: 202 LPRISTERITHELQRLLLGEHAGRALTA--TVDVLAAVLPELVAMKGFEQRTPYHIYDVL 259
Query: 257 EW--------KIDSLLRFIVLISWQDKKSILS----------------------MAKKFS 286
E L+R+ L K + + + +
Sbjct: 260 EHTARVLDGVPPYPLVRWAALFHDMGKPAAFFTDEDGTGHFYGHAAISVMLARGIMGRLA 319
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--- 343
L +++ + + + +K+ G + L + Q
Sbjct: 320 LSSAFAAQVLTLVERHDDVIDRTPKAVKRALSRLG--GNVELFAALCDLKRGDARGQAPR 377
Query: 344 ------DTCFILQVLSDI----IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
D + ++LS+I + + G DV++ G+P G VG L +
Sbjct: 378 CIDRVSDADELERILSEILAADEAFSLKKLAIDGRDVIELGVPQGPLVGLALSDALDAVM 437
Query: 394 NSSFQLSQEDLHHLLRKLIASSQ 416
+ L + + A +
Sbjct: 438 DERIDNKACALRAFIEEWRAEHE 460
>gi|46445774|ref|YP_007139.1| putative poly A polymerase [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399415|emb|CAF22864.1| putative poly A polymerase [Candidatus Protochlamydia amoebophila
UWE25]
Length = 412
Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats.
Identities = 101/410 (24%), Positives = 184/410 (44%), Gaps = 13/410 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I++ L K + GG VRD +M +DIDIAT P ++M IF T
Sbjct: 5 KQAKIIVTKLVKAGHTAYFAGGWVRDYVMGHPSEDIDIATDATPAQIMDIFPNTLL---- 60
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+++G + ++ F++ T R D DGR+ + + D+LRRDFTIN ++ D
Sbjct: 61 VGLAFGVVIVVWEGHQFEVATFRKDLDYVDGRHPSGIVLSTAREDALRRDFTINGMFYDP 120
Query: 132 QGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ + D+V G D+R I+ IG+ H R ED LR+LR FRF A +G
Sbjct: 121 LKEVIYDFVNGQEDIRRHLIRAIGNPHERFQEDRLRMLRAFRFSARFGFAIELETQQAIF 180
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
A++ ++ ERIW E K+ AIV M+ + IF +++ + +++L ++
Sbjct: 181 ENAEQLFPAVAIERIWQEFKKMAMYPCFDQAIVEMHRLTLLDVIFPELKGLPINELRHLV 240
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
EA + F ++ IVL+ +++ + +AK+ + L F + N K
Sbjct: 241 EAYKRFPKNCATIFYLIVLMPRLNREEKIEVAKRLKVTNRDLKLLHYFEDLNQLIKKEKE 300
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK-------KPLF 363
++ L+ + + ++ ++Q+ + K +
Sbjct: 301 NGLEDLYPWAHALANPDFSIVVEVIAATFPLNKGNELLIQLKNRFEKLKSHIERIQQKTP 360
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
++ + GI GK++G +L ++ IN+ +Q SQ L+ L + ++
Sbjct: 361 LISSALLQANGISAGKQMGILLTEAEKLAINNDYQDSQTVLNALKQTMLW 410
>gi|299821657|ref|ZP_07053545.1| tRNA adenylyltransferase [Listeria grayi DSM 20601]
gi|299817322|gb|EFI84558.1| tRNA adenylyltransferase [Listeria grayi DSM 20601]
Length = 395
Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats.
Identities = 91/400 (22%), Positives = 165/400 (41%), Gaps = 20/400 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ +L L ++ VGG+VRD L+ + D+DIAT+ P+ V IF K
Sbjct: 6 KQALPVLQKLTAAGFEAYFVGGSVRDFLIGRKIADVDIATSAFPEEVKEIFP----KTYD 61
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ + +++ITT R++ R +V F R D RRDFT+NA+ D
Sbjct: 62 TGIEHGTVTVRENGTFYEITTFRTEGTYEDFRRPKEVTFIRSLTEDLRRRDFTMNAIAMD 121
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G+ ID G + + I +GD H R ED LR++R RF + + +D A
Sbjct: 122 AAGRFIDPFRGKEAITAKQICAVGDPHERFHEDALRMMRAIRFVSQLDFQ-LDQATRQAL 180
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG-IFKEIFLDVQEISLDQLSQV 249
+ K L + ER +E KLL+ K A+ + + G L ++ +L QL+
Sbjct: 181 QENKALLAHTAVERKTTEWVKLLQGKAVNKALKLLVDSGVEVYLPGLQGKQEALLQLATW 240
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
F D L +++L + +S + + L + + +
Sbjct: 241 H-----FSKLQDELATWLLLAAAVKPESASQFLRAWKLSNKTIQVVSKAYE---RLMDYP 292
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
Y G++V+ F ++ + +L+ ++ + G D
Sbjct: 293 EEWTATDLYYAGEQVLCLVGSAFEIMYAKDGV---VNELLKQYGELPIHSRDELMADGRD 349
Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ + G PGK + + ++E + + + + +
Sbjct: 350 LMAWTGKAPGKWLKITIEKLEKEIVQGRLSNTSDAIKRWV 389
>gi|170686300|ref|ZP_02877522.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. A0465]
gi|170669997|gb|EDT20738.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus anthracis str. A0465]
Length = 397
Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats.
Identities = 88/401 (21%), Positives = 177/401 (44%), Gaps = 15/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A
Sbjct: 121 EEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + + + +F + +Q L
Sbjct: 180 ETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLLKATQ 238
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
FE I++ + F + ++ S+ KFS + + +K
Sbjct: 239 YNWDSFETDIEAWV-FFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + H + + + + +TG+D+
Sbjct: 298 V----LLYKTGIHIAEMAERVYEAM-IESYDHTSVERVQTLFQALPIKSRQEMDVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG V ++ ++ + + +E + L++
Sbjct: 353 LNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393
>gi|300814961|ref|ZP_07095189.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300510931|gb|EFK38203.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 445
Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats.
Identities = 106/438 (24%), Positives = 184/438 (42%), Gaps = 44/438 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D D+ ++L L+ KS IVGG +RD L+ + D DI T P +V +F + YK+
Sbjct: 2 DKDVFDLLEKLDNHGYKSYIVGGCLRDILLGIRPNDFDITTNARPSQVKEVFRE--YKIF 59
Query: 72 PTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I YGTI + R + ++ITT R + R +V+F D RRDFTI+A+
Sbjct: 60 DYGIKYGTITVEYRDRLYEITTFRSEGTYSDNRRPDRVLFLDSIDDDLARRDFTISAMAM 119
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D+ + D G+ DL+N+ I+ GDA+ RI ED LRILR RF + +D + A
Sbjct: 120 DKSYNIYDPFNGIRDLKNKIIRACGDANKRIEEDALRILRAIRFATRFKFY-LDEELFDA 178
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ LK ++ ERI+SEI K++ NP + M GI +F +++
Sbjct: 179 ISLNRNLLKNIARERIFSEICKIITYDNPSYGFLLMEETGILDILFPSLRKTVGFDQKTP 238
Query: 250 IEAEQVFEW--------KIDSLLRFIVLISW----------------------QDKKSIL 279
+F+ D LRF +
Sbjct: 239 WHDRNLFDHLLCVMDNVPNDLSLRFAAIFHDIAKPLTLKIDGDGTGHFLGHDALGATMAE 298
Query: 280 SMAKKFSLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
+ K + P+ + + + Q+ ++ +++ G + ++ ++ A
Sbjct: 299 DILKYYKAPKALIEKVSILIKEHMKVQEVMTDKALRRQIKRVGRENILDLYELLYADCVC 358
Query: 339 NLTHQD-------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
QD I ++L + K+ + G D+++ G GK +G IL + +
Sbjct: 359 TRYDQDGSFILNRKKRIEELLDEKEMKKEKFLEINGYDLIELGFH-GKIIGQILKYAENL 417
Query: 392 WINSSFQLSQEDLHHLLR 409
++ + +E L ++
Sbjct: 418 VLSDTSLNKKEILLEKIK 435
>gi|223043110|ref|ZP_03613157.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Staphylococcus
capitis SK14]
gi|222443321|gb|EEE49419.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Staphylococcus
capitis SK14]
Length = 400
Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats.
Identities = 95/403 (23%), Positives = 166/403 (41%), Gaps = 24/403 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
IL + ++ VGG+VRD LM + DIDI T+ P+ + IF K IP
Sbjct: 9 AKPILDHIKHHGFEAYFVGGSVRDYLMGRDIHDIDITTSATPNEIEDIFE----KTIPIG 64
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GTI ++ + +++TT R D + R ++V F RD D RRDFT+NA+ D
Sbjct: 65 KEHGTINVVYHHENYEVTTFRAEEDYVDHRRPSEVHFVRDLYQDVQRRDFTVNAIAMDSN 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
K DY G DL+ R I+ +G+ R ED LRI+R RF A I + A K
Sbjct: 125 YKTYDYFEGERDLKERLIRTVGEPRERFEEDALRIIRGLRFQAQLNF-KIVDNTFDAMRK 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
++ LS ERI E+ KL++ N + M FK + +
Sbjct: 184 QIADIQYLSVERIVIELKKLIKGINVAQSFNQMKEIDAFKH---------IPFFNSFNMQ 234
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ ++ + ++++ Q L + K + + + L + + S +
Sbjct: 235 RVHIDEPLEFEMWIAIMLAQQPITDTLKLLKISNNEKSKIHTLANLIKT--LPQVQSKQD 292
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFPLTG 367
+ + Y K + L L NNL + I +V + + + + G
Sbjct: 293 LIIVIYDNDIKNIKNVLATKETLKKNNLNTPNPLILNERSIEEVYNQLPIHHRKEMAING 352
Query: 368 DDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D+++ G + ++L + I + ++ ++ +
Sbjct: 353 GDIIQHLNTKSGPWLKDVLRQIEVAIITQQIKNTKVEILEWVD 395
>gi|324511430|gb|ADY44759.1| tRNA-nucleotidyltransferase 1 [Ascaris suum]
Length = 494
Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats.
Identities = 120/413 (29%), Positives = 191/413 (46%), Gaps = 9/413 (2%)
Query: 2 VSIVQHKW--FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59
+ + ++ +L + L + + + GGAVRD LM L DID A+ P ++
Sbjct: 42 MKLDSEEFRSLFTPELKKLNDLFIANKFQLRMAGGAVRDLLMGLRPADIDFASDATPSQM 101
Query: 60 MRIFSKTRYKVI-PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
+F++ +++ +GTI K+ F+ITTLR D++ DGR AKV FT DW+ D+
Sbjct: 102 KELFTREGIRMLNKNGEEHGTITCRIDDKENFEITTLRIDVVCDGRRAKVEFTTDWQLDA 161
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRD TIN+L+ + G VIDY GG+ DLR R + F+GDA RI EDYLRILR+FRFF
Sbjct: 162 NRRDLTINSLFLELDGTVIDYFGGIEDLRARRVAFVGDATQRIQEDYLRILRYFRFFGRI 221
Query: 178 GEKN--IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ + L A I K+GL +S ERIWSE+ K+ + + + M + +
Sbjct: 222 AKSGDAHEQTTLDAIINNKQGLMNISGERIWSELKKICVGRFGGDVLTTMVSRCGLASLL 281
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
++ + ++ + ++L L Q + K S +
Sbjct: 282 GLPEDCDVATCREIFNYNSDRSLEPMTVL--SALFKNQQDIDVFHKRCKLSNAEKSLAEF 339
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
I S K L Y K KI L C +++ +I
Sbjct: 340 IVEKRDEARSNIDSTKYFKDLILDYEKAPGRDKKKINGRDMVRELAKY-VCASAEIIEEI 398
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
WK P FP++G D++ G+ G + +L H + W S ++ +++L +
Sbjct: 399 GVWKMPEFPVSGKDLIGTGVKTGPIMRRVLTHLFELWKKSEYKAERDELLSHI 451
>gi|254831494|ref|ZP_05236149.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 10403S]
Length = 393
Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats.
Identities = 76/397 (19%), Positives = 149/397 (37%), Gaps = 19/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQS----TYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ + +++++TT R++ R ++V F R + D RRDFT+NA+ D+
Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEH 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D G ++N+ IK +G A R ED LR++R RF + + +
Sbjct: 124 FALHDPFSGQEAIKNKAIKAVGKASERFHEDALRMMRGVRFLSQLDFQLDSETEKALESQ 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + + + L ++ +L +
Sbjct: 184 IGLLQHTSVERITVEWLKMIKGPAIRRAMDLLLKVEMETYLPGLKGEKKALTEFGSWDWG 243
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ D++ +V+ + + A K +
Sbjct: 244 KR---TTDDAIWLGLVVTVQPNNVNAFLKAWKLPNNTIQLVSKAYQYALKMK-----ETW 295
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + Y G V ++ + N H+ + Q + K +TG D++K
Sbjct: 296 LAEELYHAGKAVFSLVNELNIIRGKENNQHK----LSQAYEALPIHSKKDLAITGADLLK 351
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G G V L + +++ + + L
Sbjct: 352 WSGESAGPWVKETLDKLECGVLSNEINNEKNQIKRWL 388
>gi|260684047|ref|YP_003215332.1| putative poly(A) polymerase [Clostridium difficile CD196]
gi|260687707|ref|YP_003218841.1| putative poly(A) polymerase [Clostridium difficile R20291]
gi|260210210|emb|CBA64432.1| putative poly(A) polymerase [Clostridium difficile CD196]
gi|260213724|emb|CBE05620.1| putative poly(A) polymerase [Clostridium difficile R20291]
Length = 470
Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats.
Identities = 101/439 (23%), Positives = 176/439 (40%), Gaps = 50/439 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+ L ++ +VGG VRD L+ D DI T+ P+ V+ +F K IP
Sbjct: 33 KKVDYIIKELETNGYEAYVVGGCVRDCLLERVPNDWDITTSARPEVVVELFE----KTIP 88
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + F++TT R D +DGR+ + FT + D RRDFTIN++ +
Sbjct: 89 TGIQHGTVTVMIEHEPFEVTTYRIDGNYSDGRHPDSIEFTNNIVKDLSRRDFTINSIAYN 148
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D G D++N+ I+ +G+ R ED LR+LR RF A I +
Sbjct: 149 SKTGLVDPFNGYEDIQNKYIRCVGNPVDRFEEDALRMLRAVRFSAQLNF-KIAEGTKQSI 207
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K +K +S ERI +E NK+L + + + + + G+ K I ++ E+
Sbjct: 208 HKKADLIKNVSIERIQTEFNKILVSDSSK--LNLLKSTGLLKFIIPEICELEDVTQHNPY 265
Query: 251 EAEQVFEWKI--------DSLLRFIVLISWQDK----------------------KSILS 280
V + + + L+ +L K K
Sbjct: 266 HIYDVQKHTLISTEVIEDELYLKLTMLFHDLGKKVTKTTDKNGVDHFYTHSRESVKIAKK 325
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-KVMIAKLKIFLALHYNN 339
+ ++ ++ + + IKKL D ++ +K+ A
Sbjct: 326 ILRRLKYDNYTINKVLILIQYHDYRIEPKRKIIKKLLNKLEDVELFEDLIKVNWADTLAK 385
Query: 340 LTHQDTCFILQVLSDIIHWKK----------PLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
IL ++ +K + G D++ GI PGK +G+IL
Sbjct: 386 NPKYAKQKILNLIECEKEFKHIINQKECFNLKDLAINGKDLISIGIKPGKDIGHILNKML 445
Query: 390 QEWINSSFQLSQEDLHHLL 408
+ IN+ +E L
Sbjct: 446 EIVINNPELNEKEILKEKA 464
>gi|119385302|ref|YP_916358.1| polynucleotide adenylyltransferase region [Paracoccus denitrificans
PD1222]
gi|119375069|gb|ABL70662.1| Polynucleotide adenylyltransferase region [Paracoccus denitrificans
PD1222]
Length = 388
Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats.
Identities = 118/408 (28%), Positives = 187/408 (45%), Gaps = 28/408 (6%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
++ + + D L +L+ L G ++ IVGGAVR++L+ V D+DI+T+ P+ +R
Sbjct: 1 MTRLTAPFLDDPALKQVLAALAAGGAQALIVGGAVRNALLGEPVADVDISTSARPEDTVR 60
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ + +PT I +GT+ +I + F++T+ R D+ T GR A V ++ + D+ RRD
Sbjct: 61 LAEAAGLRSVPTGIEHGTVTVIADGRGFEVTSFRRDVETFGRRAVVAYSDRIEDDAHRRD 120
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FT+NALYA G+V+D VGGL DL R ++F+G+ H RI EDYLRILRFFR A YG +
Sbjct: 121 FTMNALYATASGEVLDPVGGLPDLAARRLRFVGNPHARIAEDYLRILRFFRLLAWYGREA 180
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ L A + ++GL +S ERI EI KLL+A +P A+ M G+ +
Sbjct: 181 -ELQALAACRELREGLTGISRERIGHEIRKLLDAPDPSRAVALMAEAGVLPLVLPGADAG 239
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L L +V + R + L++ QD + L
Sbjct: 240 DLPDLVEVEREYGT--GALPCWPRRLALLAPQDAEGALR-------------LSRDEARA 284
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ Y +G + I A D+
Sbjct: 285 QDHIAAALALPAPAAAYRFGRASAAQAVLIRAARGERPAFG--------WCHDLARGAAA 336
Query: 362 LFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
FPLT D++ + G +G L + ++ S F L ++ L +
Sbjct: 337 QFPLTARDLMPEL---SGPALGEALRRAEAAFVESDFTLPRDALLRIA 381
>gi|94994160|ref|YP_602258.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS10750]
gi|166233884|sp|Q1J760|CCA_STRPF RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|94547668|gb|ABF37714.1| poly(A) polymerase / tRNA nucleotidyltransferase [Streptococcus
pyogenes MGAS10750]
Length = 402
Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats.
Identities = 101/403 (25%), Positives = 180/403 (44%), Gaps = 18/403 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF+ + +
Sbjct: 13 ALPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFN----RTVDVG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+
Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL DL + ++ +G A R ED LRI+R FRF A +I++ A
Sbjct: 129 GQVIDKFRGLIDLEQKRLRAVGKAEERFEEDALRIMRGFRFAASLDF-DIEAATFEAMRS 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQLSQVIE 251
L+ +S ER ++E +KLL A + I M + L +E L+ L ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQREAGLNHLIVSLK 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F + ++ ++ +D KS L K + + LI+ + + +
Sbjct: 248 DNFTFSDHHQAWAYVMISLAIEDPKSFLKAWKTSNDFQRYVTKLIALYRIRQERSFEKL- 306
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y YG ++ + L D I + + K L G ++
Sbjct: 307 ----DIYQYGKEMA----SLVEGLRKAQSLSVDMDHIEALDQALAIHNKHDIVLNGSHLI 358
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
K +G+ PG ++G +L + + + +R+ +A
Sbjct: 359 KDFGMEPGPQLGLMLEKVELAIVEGCLDNDFTTIEAFVREELA 401
>gi|47096488|ref|ZP_00234080.1| polyA polymerase [Listeria monocytogenes str. 1/2a F6854]
gi|224500255|ref|ZP_03668604.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes Finland 1988]
gi|254899398|ref|ZP_05259322.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes J0161]
gi|254912463|ref|ZP_05262475.1| polyA polymerase [Listeria monocytogenes J2818]
gi|254936790|ref|ZP_05268487.1| polyA polymerase [Listeria monocytogenes F6900]
gi|284802350|ref|YP_003414215.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 08-5578]
gi|284995492|ref|YP_003417260.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 08-5923]
gi|47015141|gb|EAL06082.1| polyA polymerase [Listeria monocytogenes str. 1/2a F6854]
gi|258609385|gb|EEW21993.1| polyA polymerase [Listeria monocytogenes F6900]
gi|284057912|gb|ADB68853.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 08-5578]
gi|284060959|gb|ADB71898.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 08-5923]
gi|293590445|gb|EFF98779.1| polyA polymerase [Listeria monocytogenes J2818]
Length = 393
Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats.
Identities = 76/397 (19%), Positives = 149/397 (37%), Gaps = 19/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQS----TYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ + +++++TT R++ R ++V F R + D RRDFT+NA+ D+
Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEH 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D G ++N+ IK +G A R ED LR++R RF + + +
Sbjct: 124 FALHDPFSGQEAVKNKAIKAVGKASERFHEDALRMMRGVRFLSQLDFQLDSETEKALESQ 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + + + L ++ +L +
Sbjct: 184 IGLLQHTSVERITVEWLKMIKGPAIRRAMDLLLKVEMETYLPGLKGEKKALTEFGSWDWG 243
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ D++ +V+ + + A K +
Sbjct: 244 KR---TTDDAIWLGLVVTVQPNNVNAFLKAWKLPNKTIQLVSKAYQYALKMK-----ETW 295
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + Y G V ++ + N H+ + Q + K +TG D++K
Sbjct: 296 LAEELYHAGKAVFSLVNELNIIRGKENNQHK----LSQAYEALPIHSKKDLAITGADLLK 351
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G G V L + +++ + + L
Sbjct: 352 WSGESAGPWVKETLDKLECGVLSNEINNEKNQIKRWL 388
>gi|218896565|ref|YP_002444976.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus G9842]
gi|226702036|sp|B7IPB4|CCA_BACC2 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|218543355|gb|ACK95749.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus G9842]
Length = 397
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 86/400 (21%), Positives = 176/400 (44%), Gaps = 15/400 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A
Sbjct: 121 EEGEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSALGF-SLETKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + + + +F L ++S ++L +
Sbjct: 180 ETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERLLKAT 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + F + ++ S+ KFS + + +K
Sbjct: 238 QYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLAIRTRKEKDWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + + + + + +TG+D+
Sbjct: 298 V----LLYKTGIYIAEMAERVYEAM-IESYNPTSVKRVQSMFHALPIQGRQEMNVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ + PG V ++L ++ + + +E + L+
Sbjct: 353 LNWANKKPGPWVADMLQKIEEAIVKGNVVNEKERIREWLQ 392
>gi|83953100|ref|ZP_00961822.1| polyA polymerase family protein [Sulfitobacter sp. NAS-14.1]
gi|83842068|gb|EAP81236.1| polyA polymerase family protein [Sulfitobacter sp. NAS-14.1]
Length = 388
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 128/409 (31%), Positives = 195/409 (47%), Gaps = 30/409 (7%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M +W D D + + G VGG VR++L+ ++ D+D++T LP+RVM
Sbjct: 1 MTLPASTRWLSDPDAQAVCDAVTDGGHAIYFVGGCVRNALLGVADSDVDMSTNALPERVM 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ ++ K +PT + +GT+ ++ K F++TT R D+ TDGR A V F+ D+LRR
Sbjct: 61 ALAARAGLKAVPTGVEHGTVTVVSGGKGFEVTTFRRDVETDGRRAVVAFSDSILDDALRR 120
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY--G 178
DFT+NALYAD QG+VID + GL DLR R ++FI DA RI EDYLR LR+FRF A Y
Sbjct: 121 DFTMNALYADAQGRVIDPLEGLVDLRARRVRFIEDAAQRIREDYLRTLRYFRFCAWYADP 180
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ D + L A GL+ LS+ERI +E+ KLL A +P A+ M G+ I
Sbjct: 181 VEGFDPEALAAIAAHIDGLERLSAERIGAELTKLLTAPDPAPAVAAMRQTGVLGAILPGS 240
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ L V+ EQ+ + +D R L + ++ L + +L
Sbjct: 241 DD---RWLGMVVHFEQLLQMSVDWRRRLAALGG-------EDIDQRLRLSKADAKYLHRL 290
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ +T++ G + A + + L VL I
Sbjct: 291 KEAAYGAETVAAIAHTD-----GGDMARAVVVLRACLSETPPDAA-------VLDRIAQA 338
Query: 359 KKPLFPLTGDDVVKYGIPP--GKKVGNILVHCKQEWINSSFQLSQEDLH 405
+ +FP+ D++ P G +G L K WI S F +++ L
Sbjct: 339 EAAVFPVQAADLM----PEYTGPALGRRLAELKALWIASGFAATRDSLL 383
>gi|196046561|ref|ZP_03113785.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus 03BB108]
gi|225863499|ref|YP_002748877.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus 03BB102]
gi|254813686|sp|C1EN33|CCA_BACC3 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|196022494|gb|EDX61177.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus 03BB108]
gi|225787215|gb|ACO27432.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus 03BB102]
Length = 397
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 85/401 (21%), Positives = 177/401 (44%), Gaps = 15/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMGIFPRH----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A
Sbjct: 121 EEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + + + +F L ++S ++L +
Sbjct: 180 ETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERLLKAT 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ F + ++ S+ KFS + + +K
Sbjct: 238 QYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + + + + + + +TG+D+
Sbjct: 298 V----LLYKTGIHIAEMSERVYEAM-IESYDNTSVKRVQTLFEALPIKSRQEMNVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG V ++ + ++ + + +E + L++
Sbjct: 353 LNWANKKPGPWVAEMIQNIEEAIVQGNVVNEKECIREWLQE 393
>gi|56694954|ref|YP_165299.1| polyA polymerase family protein [Ruegeria pomeroyi DSS-3]
gi|56676691|gb|AAV93357.1| polyA polymerase family protein [Ruegeria pomeroyi DSS-3]
Length = 384
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 117/406 (28%), Positives = 178/406 (43%), Gaps = 28/406 (6%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
++ + W + + L +G ++ VGG VR++L+ V DIDI T P+RVM
Sbjct: 1 MTRIDEAWLTEPATQQVCRALTEGGAQALFVGGCVRNALLGAPVSDIDITTDAHPERVMA 60
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ + K +PT I++GT+ ++ ++TT R D+ TDGR A V F+ D+ RRD
Sbjct: 61 LAAAAGIKAVPTGIAHGTVTLVANSIPHEVTTFRRDVETDGRRAVVAFSDSIHEDAARRD 120
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FT+NALYA G V+D + GL DL+ R ++FIGDA RI EDYLR LR+FRF A YG+
Sbjct: 121 FTMNALYARPDGTVLDPLDGLPDLQARRVRFIGDATDRIREDYLRSLRYFRFHAWYGDAE 180
Query: 182 IDSDGLVASIKAKKGL--KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
D + A LS ER+ +E+ KL A +P ++ M G+ ++
Sbjct: 181 AGFDAEALAAIAGNLDGLSRLSRERVGAEMLKLFAAPDPAPSVAAMRAAGVLAQLLPGAD 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ +L L + + D + R L + S+
Sbjct: 241 DRALAPLVHLED-----GLGADPIRRLAALGDGEALASLRLSK------------AQMAL 283
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ L +L + G + L + AL L I
Sbjct: 284 LDTLRRAALGTAGAGELGHELGVEAARDALLLRAALLEQPLDPHAPAA-------IARGA 336
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+FP+T D++ G +G L K WI S F LS+ L
Sbjct: 337 AAVFPVTARDLMPA--YSGPALGARLATLKARWIASDFSLSRAALL 380
>gi|257791803|ref|YP_003182409.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Eggerthella lenta DSM 2243]
gi|257475700|gb|ACV56020.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Eggerthella lenta DSM 2243]
Length = 465
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 93/443 (20%), Positives = 159/443 (35%), Gaps = 50/443 (11%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
L ++ IVGG VRD+L+ DIDIAT V R+F Y+ T ++G
Sbjct: 23 FDALENAGFETWIVGGYVRDALLGRPSSDIDIATQAHWQDVQRVFEGQGYRTHETGTAHG 82
Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYADQQGKVI 136
T+ +I ++ ++TT RSD + D RRDFT+NAL +
Sbjct: 83 TLTVIVDEQALEVTTYRSDGAYADARHPNQVSFVRTIAEDLARRDFTMNALAYHPARGLF 142
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
D GG DL + I+ +GD R ED LR+LR RF A G ID + + K
Sbjct: 143 DPYGGHADLEAQIIRAVGDPDRRFSEDALRMLRACRFAAELGF-AIDPNTFEGMLANKGL 201
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
L +S++RI E+ +LL ++ A+ + + ++ + + V
Sbjct: 202 LPRISTQRITHELQRLLLGEHAGRALTA--TVDVLAAVLPELVAMKGFEQRTPYHIYDVL 259
Query: 257 EW--------KIDSLLRFIVLISWQDKKSILS----------------------MAKKFS 286
E L+R+ L K + + + +
Sbjct: 260 EHTARVLDGVPPYPLVRWAALFHDMGKPAAFFTDEDGTGHFYGHAAISVMLARGIMDRLA 319
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--- 343
L +++ + + + +K+ G + L + Q
Sbjct: 320 LSSAFAAQVLTLVERHDDVIDRTPKAVKRALSRLG--GNVELFAALCDLKRGDARGQAPR 377
Query: 344 ------DTCFILQVLSDI----IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
D + ++LS+I + + G DV++ G+P G VG L +
Sbjct: 378 CIDRVSDADELERILSEILAADEAFSLKKLAIDGRDVIELGVPQGPLVGLALSDALDAVM 437
Query: 394 NSSFQLSQEDLHHLLRKLIASSQ 416
+ L + A +
Sbjct: 438 DERIDNEACALRAFIEGWRAEHE 460
>gi|312877400|ref|ZP_07737365.1| tRNA adenylyltransferase [Caldicellulosiruptor lactoaceticus 6A]
gi|311795874|gb|EFR12238.1| tRNA adenylyltransferase [Caldicellulosiruptor lactoaceticus 6A]
Length = 394
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 98/408 (24%), Positives = 177/408 (43%), Gaps = 19/408 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + ++ LN+ K+ +VGG +RD L++ +D DIAT P+ V+ +F K
Sbjct: 4 LKNEP-MKVIKTLNQHGFKAYLVGGCLRDYLLSKEPEDFDIATDAKPEDVIHLFE----K 58
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
IPT I +GT+ +I ++TT R + R+ KV FT D RRDFTINA+
Sbjct: 59 TIPTGIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMA 118
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+IDY GG+ DL+N+ ++ +G+ H R ED LRILR RF I++
Sbjct: 119 YHPDEGLIDYFGGIEDLKNKIVRCVGNPHERFFEDALRILRCIRFATQLSFV-IENKTFE 177
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K LK +S ERI E++K LE+KN + +Y + I + +I L
Sbjct: 178 ALKSLKDLLKKISQERINIELSKTLESKNSSYGLELLYESSVGSIIIPEYSQIYLY---- 233
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ + + F + F + +D I + + ++ + N
Sbjct: 234 LSQVDFDFIPTKFKVPAFFACL--RDNTLIEKLMRDLKFEKKKINAAVKLCNYL-----T 286
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
KL + +I + H+ + + K L+G+
Sbjct: 287 MECSQDKLVKKIFFEEEKEAEEILTTISILKSDHRILQIFNDLKRENKLIHKKDVQLSGE 346
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
D++ G+ G+ +G +L + + + + +++++ + + + +
Sbjct: 347 DLLVLGLR-GEMIGKVLNSVYEYILENPERNNKDEILNYVNLYLQQGK 393
>gi|118477089|ref|YP_894240.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis str. Al Hakam]
gi|118416314|gb|ABK84733.1| poly(A) polymerase [Bacillus thuringiensis str. Al Hakam]
Length = 400
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 85/401 (21%), Positives = 177/401 (44%), Gaps = 15/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 8 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMGIFPRH----VP 63
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 64 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 123
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A
Sbjct: 124 EEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKTKQAI 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + + + +F L ++S ++L +
Sbjct: 183 ETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERLLKAT 240
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ F + ++ S+ KFS + + +K
Sbjct: 241 QYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 300
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + + + + + + +TG+D+
Sbjct: 301 V----LLYKTGIHIAEMSERVYEAM-IESYDNTSVKRVQTLFEALPIKSRQEMNVTGNDL 355
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG V ++ + ++ + + +E + L++
Sbjct: 356 LNWANKKPGPWVAEMIQNIEEAIVQGNVVNEKECIREWLQE 396
>gi|315641225|ref|ZP_07896302.1| poly A polymerase [Enterococcus italicus DSM 15952]
gi|315482992|gb|EFU73511.1| poly A polymerase [Enterococcus italicus DSM 15952]
Length = 406
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 87/403 (21%), Positives = 179/403 (44%), Gaps = 16/403 (3%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L + ++ VGG VRD L++ S+ D+DIAT+ P + +FS + I
Sbjct: 12 NAQPVLQKIQAAGFEAYFVGGCVRDVLLHQSIHDVDIATSAYPSEIKELFS----RTIDI 67
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ ++ +++TT R++ R +V F R D RRDFT+NAL +
Sbjct: 68 GIEHGTVLVLWHEEQYEVTTFRTESTYQDFRRPDQVTFVRSLAEDLKRRDFTMNALALAE 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID GL+D+ + ++ +GDA+ R ED LR++R RF + + D L A
Sbjct: 128 NGTIIDLFNGLSDINQKVVRAVGDANERFHEDALRMMRGLRFISQLDF-TMAPDTLAAIE 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
K + L +S ERI E KL+ + A+ ++ ++ ++ L + IE
Sbjct: 187 KHSQLLSFISIERIRIEWEKLVLGRARNRALR-LFLATNCFLYCPQFEQ-QIEGLQKFIE 244
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ ++++ ++ ++ ++ K++ L + + + +K P
Sbjct: 245 LPEKQLTEVEAAWTLLMDCLDVPERQFVAFFKEWKLSNDTIKQIQKTYQGLQFRKHF--P 302
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + Y G +V++ + + Q I +++ + + G D+
Sbjct: 303 WNRWMVYTLGAEVVLRVESLLAYYN----PEQSFVAIEELVQLLPIESLKDLQVNGHDLQ 358
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ PGK + + L +++ + + + +L +A
Sbjct: 359 HTFQKKPGKWLSDTLHFLEKQVVEGAVANQKVELLQAAENYLA 401
>gi|254827210|ref|ZP_05231897.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL N3-165]
gi|258599593|gb|EEW12918.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL N3-165]
Length = 393
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 76/397 (19%), Positives = 149/397 (37%), Gaps = 19/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQS----TYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ + +++++TT R++ R ++V F R + D RRDFT+NA+ D+
Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEH 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D G ++N+ IK +G A R ED LR++R RF + + +
Sbjct: 124 FALHDPFSGQEAIKNKAIKAVGKASERFHEDALRMMRGVRFLSQLDFQLDSETEKALESQ 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + + + L ++ +L +
Sbjct: 184 IGLLQHTSVERITVEWLKMIKGPAIRRAMDLLLKVEMETYLPGLKGEKKALTEFGSWDWG 243
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ D++ +V+ + + A K +
Sbjct: 244 KR---TTDDAIWLGLVITVQPNNVNAFLKAWKLPNKTIQLVSKAYQYALKMK-----ETW 295
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + Y G V ++ + N H+ + Q + K +TG D++K
Sbjct: 296 LAEELYHAGKAVFSLVNELNIIRGKENNQHK----LSQAYEALPIHSKKDLAITGADLLK 351
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G G V L + +++ + + L
Sbjct: 352 WSGESAGPWVKETLDKLECGVLSNEINNEKNQIKRWL 388
>gi|77464784|ref|YP_354288.1| Poly A polymerase family protein [Rhodobacter sphaeroides 2.4.1]
gi|77389202|gb|ABA80387.1| Poly A polymerase family protein [Rhodobacter sphaeroides 2.4.1]
Length = 380
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 119/403 (29%), Positives = 187/403 (46%), Gaps = 28/403 (6%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ W + ++L + ++ VGG VR++L+ +V DID+AT +P V + +
Sbjct: 3 ISGDWLVRPTTQRLCAVLTEAGHRALFVGGCVRNALLGRAVSDIDLATDAVPAAVSALAA 62
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+KV+PT I +GT+ +I ++TT R D+ T GR+A V F+ D D+ RRDFT+
Sbjct: 63 AAGFKVVPTGIDHGTVTVIAGGVPHEVTTFRRDVETFGRHAVVAFSTDVAEDAARRDFTM 122
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--I 182
NALYA+ G VID +GGL DL R ++F+GD RI EDYLRILRFFRF A YG + +
Sbjct: 123 NALYAEASGAVIDPLGGLPDLIARRVRFVGDPIRRIEEDYLRILRFFRFHAIYGAPDEGL 182
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D++GL A +G+ LS ER+ +E+ KLL A +P ++ M G+ + + +
Sbjct: 183 DAEGLAACAARAEGVAQLSRERVGAEMRKLLAADDPARSVASMECAGVLAVVLPGAEARA 242
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
L L + E D LLR + S+ R +
Sbjct: 243 LPVLVHLEE-----GRAPDWLLR------------LASLGGAEVADRLRLSRADAAALAR 285
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ L+ + Y G ++ + + AL +
Sbjct: 286 LREAALAGAPPAEQGYRLGARLGAGAVLLRAALTETPPPAGWEAAV-------ERGATAR 338
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
FP+ D++ G +G L ++ WI S F+L + L
Sbjct: 339 FPVAAADLMPA--LAGPALGARLRALEERWIASDFRLDRAALL 379
>gi|226312087|ref|YP_002771981.1| tRNA CCA-adding enzyme [Brevibacillus brevis NBRC 100599]
gi|226095035|dbj|BAH43477.1| probable tRNA CCA-adding enzyme [Brevibacillus brevis NBRC 100599]
Length = 407
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 84/409 (20%), Positives = 154/409 (37%), Gaps = 15/409 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+L L + ++ VGG VRD L+ V DIDI T P V+ +F +PT
Sbjct: 6 AKRVLDRLEEHGFEAYYVGGCVRDWLLQRPVHDIDICTNAHPGDVILLFPDH----VPTG 61
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ +GT+ + + F++TT R R A+V F + + D RRDFT+NA+ D+
Sbjct: 62 LKHGTVSVKVEGQLFEVTTFRTEGKYEDYRRPAEVQFVSELRLDLERRDFTMNAMAMDRH 121
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D GG D+ +R ++ +G R ED LR+LR RF + G I+ ++A +
Sbjct: 122 QVLHDPFGGQEDIEHRLVRAVGIPLERFQEDALRLLRGVRFASQLGFV-IEDQTMLAMKQ 180
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L ++ ERI E+NK L++K P + + +V+++ +
Sbjct: 181 MAPLLAHIAVERIREELNKTLDSKAPEVGCQLLNETRLMAYA-PEVEKLFILSNEHAWRL 239
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS--- 309
+ L + + + + + + +
Sbjct: 240 RHLQTVTQKWSLLLFA--ANYSPVQAREVCRFLKMSKRETEAICCLVELLTRLQPKWDVP 297
Query: 310 -IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
E L G + A + +L ++ +TG
Sbjct: 298 QEIEWGPLLLEVGWDTCNEFFLLLQACWWEERQSFSMQALLDQYENMPVKTIKDLAITGL 357
Query: 369 DVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
D+ PG+ + +L ++ + E L + +K +A +
Sbjct: 358 DLQVAVQKKPGEWIVRVLESLLRQTALHGLPNTPEALVEVAKKEVAQDE 406
>gi|187736125|ref|YP_001878237.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Akkermansia muciniphila ATCC BAA-835]
gi|187426177|gb|ACD05456.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Akkermansia muciniphila ATCC BAA-835]
Length = 464
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 97/441 (21%), Positives = 171/441 (38%), Gaps = 48/441 (10%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
++ +L+ VGG VRD L+ SV+DIDIAT+ PD V+R+F
Sbjct: 9 LLRKAAEDVARVLSGAGHTVYFVGGCVRDRLLGYSVKDIDIATSARPDEVLRLFPDA--- 65
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
++G + + F++ T R D DGR + V D + D+ RRDFT+N L+
Sbjct: 66 -WEVGAAFGVVLVRREGFSFEVATFRRDGSYRDGRRPEDVCFTDAEEDARRRDFTMNGLF 124
Query: 129 ADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
D +V+DYVGG+ D+R R ++ IG+ R ED LR++R RF E ++
Sbjct: 125 EDPFSSPPGRVVDYVGGVEDIRARVLRCIGEPDRRFEEDSLRLMRAVRFAVTR-EVQVEK 183
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISL 243
+ + + L +S ERI E++++L + + + G+ K + ++ + I
Sbjct: 184 ETCSSIFRNAPLLARISPERIREELDRILLSPGRKRGVEMLVETGLMKHVIPEIYDMIGC 243
Query: 244 DQLSQVIEAEQVFEWKIDSL-------------LRFIVLISWQDKK-------------- 276
Q Q V+ + L L VL+ K
Sbjct: 244 TQPPQWHPEGDVYTHTLMMLDALGRDGSPVSLKLALGVLLHDIGKPPCRQVDETGRIRFS 303
Query: 277 --------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ ++ + + S + + L +
Sbjct: 304 GHDKEGSSMARVILRRLKYSNAVVDAVCSMVERHMRFINVRQMRKSTLRMFMNAPHFRDE 363
Query: 329 LKI-FLALHYNNLTHQDTCFILQVLSDIIHWK-KPLFPLTGDDVVKYGIPPGKKVGNILV 386
L++ L +N + F+ + + P +TG D+V G+ PG G L
Sbjct: 364 LELHRLDCLSSNGLMDNWQFVRDFMDSYRNAPLVPPPLVTGRDLVNLGLSPGPDFGKWLS 423
Query: 387 HCKQEWINSSFQLSQEDLHHL 407
++ + + + +E L L
Sbjct: 424 RLQELQLEGTLRTREEALLQL 444
>gi|16801085|ref|NP_471353.1| tRNA CCA-pyrophosphorylase [Listeria innocua Clip11262]
gi|73619792|sp|Q92AA3|CCA_LISIN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|16414520|emb|CAC97249.1| cca [Listeria innocua Clip11262]
Length = 393
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 83/397 (20%), Positives = 155/397 (39%), Gaps = 19/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N + D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRPISDVDIATSAFPEEVKEIFQS----TYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ + K+ +++TT R++ R ++V F R + D LRRDFT+NA+ D+
Sbjct: 64 IAHGTVTVRENKECYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLLRRDFTMNAIAMDEN 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
K+ D G ++N+ IK +G A R ED LR++R RF + + + +
Sbjct: 124 FKLHDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQLDFQLDKETETALTNQ 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
I + + + ++ +L + +
Sbjct: 184 IALLQHTSVERITVEWIKMIKGQAVKRAIDLLLKVEMETYLPGFKGEKSALMEFASWNWE 243
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ E I L V S +I + K + LP + + + N K
Sbjct: 244 KRTTETAIWLGLVIAVKPS-----NITAFLKAWKLPNKTIQLVNKAYEAALNMK---ETW 295
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + Y + V + +I ++ + + + K +TG D++K
Sbjct: 296 LTEELYHAQEAVFLLVNEINNIRGQSD----KEDELKKAYELLPIHSKKDLAITGADLLK 351
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G G V L + + + + + L
Sbjct: 352 WTGENAGPWVKETLDKVECQVLLGKINNEKNQIKRWL 388
>gi|146278676|ref|YP_001168835.1| polynucleotide adenylyltransferase region [Rhodobacter sphaeroides
ATCC 17025]
gi|145556917|gb|ABP71530.1| Polynucleotide adenylyltransferase region [Rhodobacter sphaeroides
ATCC 17025]
Length = 380
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 121/403 (30%), Positives = 185/403 (45%), Gaps = 28/403 (6%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
++ W + + + L ++ VGG VR++L+ V DID+AT +PD V + +
Sbjct: 3 IEGDWIAEPATQTLCAALAAAGHRALFVGGCVRNALLGRPVADIDLATDAVPDTVSAVAA 62
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+KV+PT I +GT+ +I ++TT R D+ T GR+A V F+ D D+ RRDFT+
Sbjct: 63 AAGFKVVPTGIEHGTVTVIASGIPHEVTTFRRDIETFGRHAVVAFSTDVAEDAARRDFTM 122
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--I 182
NALYA+ G+VID +GGL DL R ++F+GD RI EDYLRILRFFRF A YG+ + +
Sbjct: 123 NALYAEATGEVIDPLGGLPDLIARRVRFVGDPIQRIEEDYLRILRFFRFHAIYGDPSEGL 182
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D++GL A +GL LS ER+ +E+ KLL A +P A+ M G+ + +
Sbjct: 183 DAEGLAACAARAEGLGQLSRERLGAEMRKLLAADDPAPAVAAMEAAGVLVRVLPGASARA 242
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
L L + E R + +A + L R L
Sbjct: 243 LPVLVHLEED------------RPAGWLVRLASLGGEEVADRLRLSRADGAALGRLRAAA 290
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ Y G + + + AL +D+
Sbjct: 291 LRGAPPAEQG-----YRLGLDLGAGAVLLHAALSEAPPPEG-------WRADVARGAGAR 338
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
FP+ D++ G +G L ++ WI S F+L + L
Sbjct: 339 FPVRAADLMPA--LAGPALGARLRELEERWIASDFRLDRAALL 379
>gi|326939253|gb|AEA15149.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 397
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 86/400 (21%), Positives = 176/400 (44%), Gaps = 15/400 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A
Sbjct: 121 EEGEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSALGF-SLETKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + + + +F L ++S ++L +
Sbjct: 180 ETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERLLKAT 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + F + ++ S+ KFS + + +K
Sbjct: 238 QYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLAIRTRKEKDWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + + + + + +TG+D+
Sbjct: 298 V----LLYKTGIYIAEMAERVYEAM-IESYDPTSVKRVQSMFHALPIQGRQEMNVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ + PG V ++L ++ + + +E + L+
Sbjct: 353 LNWANKKPGPWVADMLQKIEEAIVKGNVVNEKERIREWLQ 392
>gi|312793903|ref|YP_004026826.1| polynucleotide adenylyltransferase region [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312181043|gb|ADQ41213.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 394
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 98/408 (24%), Positives = 177/408 (43%), Gaps = 19/408 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + ++ LN+ K+ +VGG +RD L++ +D DIAT P+ V+ +F K
Sbjct: 4 LKNEP-MKVIKTLNQHGFKAYLVGGCLRDYLLSKEPEDFDIATDAKPEDVIHLFE----K 58
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
IPT I +GT+ +I ++TT R + R+ KV FT D RRDFTINA+
Sbjct: 59 TIPTGIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMA 118
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+IDY GG+ DL+N+ ++ +G+ H R ED LRILR RF I++
Sbjct: 119 YHPDEGLIDYFGGIEDLKNKIVRCVGNPHERFFEDALRILRCIRFATQLSFV-IENKTFE 177
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K LK +S ERI E++K LE+KN + +Y + I + +I L
Sbjct: 178 ALKSLKDLLKKISQERINIELSKTLESKNSSYGLELLYESSVGSIIIPEYSQIYLY---- 233
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ + + F + F + +D I + + ++ + N
Sbjct: 234 LSQIDFDFIPTKFKVPAFFACL--RDNTLIEKLMRDLKFEKKKINAAVKLCNYL-----T 286
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
KL + +I + H+ + + K L+G+
Sbjct: 287 MECSQDKLVKKIFFEEEKEAEEILTTISILKSDHRILQIFNDLKRENKLIHKKDVQLSGE 346
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
D++ G+ G+ +G +L + + + + +++++ + + + +
Sbjct: 347 DLLVLGLR-GEMIGKVLNSVYEYILENPERNNKDEILNYVNLYLQQGK 393
>gi|315282932|ref|ZP_07871227.1| CCA-adding enzyme [Listeria marthii FSL S4-120]
gi|313613420|gb|EFR87269.1| CCA-adding enzyme [Listeria marthii FSL S4-120]
Length = 393
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 86/397 (21%), Positives = 158/397 (39%), Gaps = 19/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQS----TYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ + K+ +++TT R++ R ++V F R K D LRRDFT+NA+ D+
Sbjct: 64 IAHGTVTVRENKECYEVTTFRTEGTYEDFRRPSEVTFIRSLKEDLLRRDFTMNAIAMDEH 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D G ++++ IK +G A R ED LR++R RF + + +
Sbjct: 124 FDLHDPFAGQLAIQHKEIKAVGKASERFHEDALRMMRAVRFLSQLDFELDKETENALGSQ 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
I + + + L ++ +L + + A
Sbjct: 184 IALLEHTSVERITVEWIKMIKGPAVKRAMDLLLKVEMETYLPGLQGEKAALTEFASWDWA 243
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+++ E I L V S ++ + K + LP + + + F++K
Sbjct: 244 KRISEEVIWLGLVVAVKPS-----NVTAFLKAWKLPNKTIQLVNKAYQDAFDRK---EIW 295
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ Y G V ++ + + Q S + K +TG D++K
Sbjct: 296 QTEELYHAGQPVFSLVNELNVL----RGQEDKQQVLNQAYSALPIHSKKDLAITGADLLK 351
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G G V L + ++S + + L
Sbjct: 352 WSGENAGPWVKETLDKLECAILSSEINNEKNQIKRWL 388
>gi|319400808|gb|EFV89027.1| poly A polymerase head domain protein [Staphylococcus epidermidis
FRI909]
Length = 400
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 106/405 (26%), Positives = 170/405 (41%), Gaps = 24/405 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + K+ VGG+VRD +M + D+DI T+ +PD + IF K IP
Sbjct: 7 EQAKPILKKIQNKGFKAYFVGGSVRDYIMQRPIHDVDITTSAMPDEIESIFD----KTIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + ++ITT RS + I R ++V F RD D RRDFT+NA+ D
Sbjct: 63 VGKEHGTINVVFQNDNYEITTFRSEDEYINHRRPSEVYFVRDLYQDVQRRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++ DY G D++NR I+ +G R ED LRI+R RF + + IDSD L A
Sbjct: 123 LNYQLYDYFNGQQDIKNRVIRTVGVPSERFAEDALRIIRGLRFQSQLNFQ-IDSDTLHAM 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
++ LS ER+ E+ KL+ N + M N F +
Sbjct: 182 SSHISDIQYLSVERVVVELKKLIMGNNVKQSFEVMQNMKAFNY---------IPFFKSFE 232
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + I L +LI Q K LS K + + I+ K S
Sbjct: 233 MSHLHIDEPITFELWIAILIVQQPKDVQLSSLKISNQEKATIKKWITLI--QTLPKIQSK 290
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL-----SDIIHWKKPLFPL 365
+ L Y Y K + L + L N LT + I ++ + + +
Sbjct: 291 QSLITLVYDYNLKDIEILLSLHHLLKQNGLTTANHLIINEISVREANKKLPIHCRKELAI 350
Query: 366 TGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G D++ + G + + L + I++ ++E++ +
Sbjct: 351 NGKDILNHTNKNSGPWLKDTLREIEIAVISNQIANTKEEILEWVD 395
>gi|149183107|ref|ZP_01861558.1| tRNA nucleotidyltransferase [Bacillus sp. SG-1]
gi|148849184|gb|EDL63383.1| tRNA nucleotidyltransferase [Bacillus sp. SG-1]
Length = 395
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 90/399 (22%), Positives = 157/399 (39%), Gaps = 21/399 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ +L L + ++ VGGAVRD L+N DIDIAT+ LP V +F K I
Sbjct: 9 KQALPVLEKLEEAGYQAYFVGGAVRDLLLNRPTNDIDIATSALPQEVKGVFP----KTID 64
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYAD 130
I +GT+ +I + ++ITT RS+ T K D RRDFTINA+ D
Sbjct: 65 VGIEHGTVVVIYNETPYEITTFRSEEEYKDHRRPESVTFIKSLKEDLQRRDFTINAIAMD 124
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G + D GG D++ +TI+ +G A R ED LR++R RF A G K +
Sbjct: 125 RSGTIHDPFGGEVDIKAKTIRTVGSADERFKEDALRMMRAVRFMAQLGFKMENDTFESIK 184
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
I KLL + + + G+ + ++ +
Sbjct: 185 RNGNTLKYIAVERLSAE-FEKLLGGRFKKASFESLSETGL-YQFLPGLKA----NVVTSA 238
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + + +V +S DK + + I + + I
Sbjct: 239 AGMPINHLSTEQMWIMLVHLSKGDKSILEHWRLPSKKIKYISKGVSFL------SDRMKI 292
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
P + YL G + + +++ + + T D + ++ + + LTG+D+
Sbjct: 293 PWDQYSLYLAGISIALDVQEVYHVVDPHEST--DLQDLKKMYEKLPIKDRGELALTGNDL 350
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ + G G + +I+ ++ I + + L
Sbjct: 351 MGWTGKSGGPWIRDIIEKTEKAVIQGEVSNQKTTIREWL 389
>gi|262204638|ref|YP_003275846.1| tRNA adenylyltransferase [Gordonia bronchialis DSM 43247]
gi|262087985|gb|ACY23953.1| tRNA adenylyltransferase [Gordonia bronchialis DSM 43247]
Length = 489
Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 85/454 (18%), Positives = 169/454 (37%), Gaps = 56/454 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76
+ +L + +VGG+VRD+++ D+D T P++++ + + I
Sbjct: 37 PLGALFTDAGHELYLVGGSVRDAILGRLGNDLDFTTDARPEQILELVGGWADAIWDVGIE 96
Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ--- 132
+GT+ + + +ITT R+D GR +V F D +RRDFTINA+
Sbjct: 97 FGTVGVRKGEAMIEITTFRADAYDRVGRNPEVTFGDTLDGDLVRRDFTINAMAVRVDADG 156
Query: 133 -GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
++D + G+ L I +D LR+LR RF + G + A
Sbjct: 157 AQDLLDPLDGVTALLAGVIDTPAAPEDSFGDDPLRMLRAVRFISQLGF-RLAPRVADAIT 215
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-------- 243
+ ++ +++ER+ E++KL+ + P++AI M G+ + + +V + L
Sbjct: 216 RMADQIERITAERVRMELDKLICGEYPIDAIDAMVETGLAQHVLPEVPGMKLTIDEHHQH 275
Query: 244 -----DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------------- 281
L+ + +A + E D +LR+ L+ K +
Sbjct: 276 KDVYQHSLTVLRQAIDLEEGDPDLVLRWAALLHDIGKPATRRHEPGGGVSFHHHEVVGAK 335
Query: 282 -----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIFL 333
+ P+ + + + Y+ ++ +L +
Sbjct: 336 MVRKRMRALKYPKAVVSDVADLVYLHLRFHGYGDGTWTDSAVRRYVTDAGPLLGRLHKLV 395
Query: 334 ALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKKVG 382
+ + Q + + L G+ +++ G+PPG VG
Sbjct: 396 RADCTTRNKRRARRLQQNYDHLEQRIADLAAAEDLDRVRPDLDGNAIMELLGLPPGPLVG 455
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ K+ ++ LS E+ LR+ A+ Q
Sbjct: 456 EAWRYLKELRLDRG-PLSHEEAEDALREWWAARQ 488
>gi|157692744|ref|YP_001487206.1| tRNA CCA-pyrophosphorylase [Bacillus pumilus SAFR-032]
gi|167006454|sp|A8FEH9|CCA_BACP2 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|157681502|gb|ABV62646.1| bifunctional tRNA adenylyltransferase/tRNA cytidylyltransferase
[Bacillus pumilus SAFR-032]
Length = 400
Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 86/407 (21%), Positives = 164/407 (40%), Gaps = 20/407 (4%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + H I IL L++ ++ VGGAVRD L+ + DIDIAT PD V +F
Sbjct: 1 MNEPFTH---AIPILHTLHEHGYQAYFVGGAVRDVLLGREIGDIDIATDATPDTVESLFE 57
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDF 122
K + +GT+ ++ +++TT R+ + R +V F K D LRRD
Sbjct: 58 ----KTVDVGKEHGTVIVLHDGMSYEVTTFRTESEYEDFRRPKEVAFITSLKEDLLRRDL 113
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
TINA+ D G++ID+VGG D+ + I+ +GD R ED LR++R RF + G +
Sbjct: 114 TINAMAMDINGEIIDHVGGKQDIERKRIQTVGDPACRFQEDALRMMRAIRFLSQLGFELA 173
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
I + + KLL+ + AI + + +++E+ ++
Sbjct: 174 AETAEAMEKDKHLLANISVERKKIE-MEKLLKGRYCERAIKVLISTKLYEELPGLEKDRL 232
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
D ++ + ++ + + L +E + +
Sbjct: 233 QDSFQTFPYYLLDGLEEVWGAVIHLLGLDEEKAVLFL---------KEWKLSTKLLKDAV 283
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + + + G+ V+++ LKI H + + +
Sbjct: 284 AISRYVDCEWNAEKMFEAGEHVLLSSLKITQLKHERRIFFDELEAAKSSYDALPIKTLQD 343
Query: 363 FPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++G D++ + GK + L K+ +++ + +E + L
Sbjct: 344 LAVSGKDLMAFRQKTSGKWIAEELDLVKKAVLHNHLENRKEAIEEWL 390
>gi|163939453|ref|YP_001644337.1| tRNA CCA-pyrophosphorylase [Bacillus weihenstephanensis KBAB4]
gi|226702039|sp|A9VME7|CCA_BACWK RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|163861650|gb|ABY42709.1| Polynucleotide adenylyltransferase region [Bacillus
weihenstephanensis KBAB4]
Length = 397
Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 89/401 (22%), Positives = 180/401 (44%), Gaps = 15/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ +L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIEMLKQHGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++G+++D G +R + I +GDA R ED LR++R RF + G +++ A
Sbjct: 121 EEGEMVDLFAGKEAIRLKEITTVGDAADRFQEDALRMMRGIRFVSTLGF-SLEIKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL +N + + +F L ++S ++L +
Sbjct: 180 ETYGHLLEHIAIERITVEFEKLLTGTYCVNGLQELVETKLF--SHLPYLQMSEERLLKAT 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + F + ++ S+ KFS + + + +K
Sbjct: 238 QYKWDSFETDVEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLAIRSRKEKEWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G ++ +++ A+ + + + + + +TG+D+
Sbjct: 298 I----LLYKTGIRIAEMAERVYEAI-IESYNSASVKQVQSLFHALPIKNRQEMNVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG V +L + ++ + +ED+ L++
Sbjct: 353 LSWTDKKPGPWVAEMLQNIEEAIVQGDLVNKKEDIREWLQR 393
>gi|209559222|ref|YP_002285694.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes NZ131]
gi|209540423|gb|ACI60999.1| tRNA nucleotidyltransferase [Streptococcus pyogenes NZ131]
Length = 386
Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 101/399 (25%), Positives = 180/399 (45%), Gaps = 18/399 (4%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
++ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF+ + + I +G
Sbjct: 1 MTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFN----RTVDVGIEHG 56
Query: 79 TIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136
T+ ++ ++ITT R++ + R ++V F R + D RRDFT+NAL D+ G+VI
Sbjct: 57 TVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDENGQVI 116
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
D GL DL+ + ++ +G A R ED LRI+R FRF A +I++ A
Sbjct: 117 DKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASLDF-DIEATTFEAMRSHSPL 175
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQLSQVIEAEQV 255
L+ +S ER ++E +KLL A + I M + L QE L+ L ++
Sbjct: 176 LEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIVSLKDNFT 235
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
F + ++ ++ +D KS L K + + LI+ + + +
Sbjct: 236 FSDHHQAWTYVMISLAIEDPKSFLKAWKTSNDFQRYVTKLIALYRIRQERSFEKL----- 290
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YG 374
Y YG K+ + L D I + ++ K L G ++K +G
Sbjct: 291 DIYQYGKKMA----SLVEDLRKAQSLSVDMDHINTLDQALVIHDKHDIVLNGSHLIKDFG 346
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ PG ++G +L + + + +R+ +A
Sbjct: 347 MKPGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELA 385
>gi|315303843|ref|ZP_07874330.1| CCA-adding enzyme [Listeria ivanovii FSL F6-596]
gi|313627786|gb|EFR96432.1| CCA-adding enzyme [Listeria ivanovii FSL F6-596]
Length = 393
Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 80/399 (20%), Positives = 152/399 (38%), Gaps = 19/399 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF+
Sbjct: 6 KKALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKTIFTS----TYD 61
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I++GT+ + +Y+++TT R++ R ++V F R + D LRRDFT+NA+ D
Sbjct: 62 TGIAHGTVTVRENNEYYEVTTFRTEGAYEDYRRPSEVTFIRSLEEDLLRRDFTMNAIAMD 121
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ D G +R + I+ +G A R ED LR++R RF +
Sbjct: 122 GDFDLHDPFLGQISIRKKEIRAVGKASERFHEDALRMMRAIRFLSQLDFHLEKETEAALQ 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ + + + + + L + +L +
Sbjct: 182 NQIGLLKHTSVERITVEWVKMVKGSAIKRAMELLLKVEMESFLPGLKGKAAALSNFASWN 241
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
++ E I L V ++ + K + LP + + + +KT
Sbjct: 242 WDKRETEKAIWLGLVVAVK-----PNNVTAFLKAWKLPNKTVQLVNKTYQYALTKKT--- 293
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
++ Y G + ++ N + +V + K +TG D+
Sbjct: 294 DWSEEELYHAGVEAFSLVNELNTIRFGEN----QLERLAKVYQSLPIHSKKDLAITGADL 349
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+K+ G G + L ++ I + + + L
Sbjct: 350 LKWSGEKAGPWMKETLDKIERAVILKEMKNEKNAIRRWL 388
>gi|254560584|ref|YP_003067679.1| nucleotidyl transferase/polymerase [Methylobacterium extorquens
DM4]
gi|254267862|emb|CAX23728.1| putative nucleotidyl transferase/polymerase [Methylobacterium
extorquens DM4]
Length = 424
Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 123/399 (30%), Positives = 192/399 (48%), Gaps = 7/399 (1%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + L+ L+ +++ +VGG VRD+L+ V DID+ATT+ P+ VM + K
Sbjct: 23 LARAGVQACLAALDAPGEETRLVGGCVRDALLGTIVADIDLATTLRPEAVMACAREAGLK 82
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ T I +GTI +I + ++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL
Sbjct: 83 AVGTGIEHGTITLIVGGEPHEVTTLREDVETDGRHAVVRFGRDFVRDAERRDFTINALSL 142
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D +G++ D GG+ DL ++FIGDA R+ ED LR+LRFFRF A YG D++GL A
Sbjct: 143 DAEGRLHDTTGGVADLAAGRVRFIGDAATRLREDALRLLRFFRFHARYGSGAPDAEGLAA 202
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
SI A+ L LS ER+ +E KLL A ++A+ + G+ I V E+ +L++
Sbjct: 203 SIAARDSLDRLSRERVRAEFLKLLLAPRAVDAVAILSETGLLPRILGGVGELG--RLARC 260
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
AE + ++ + + + L R L +
Sbjct: 261 AAAEPHLDAT-----ARFAALAVRTIEDADRLQASLRLSRAEHARLTGYAIALAALHDRP 315
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ E + L ++ +AL + +P+ P+TG D
Sbjct: 316 VIEADAVPALVATYEASPLRELLIALDGEPRPRVTPAARAVLDRMEAAGTRPVLPVTGAD 375
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+V G+ PG+ VG L + W+ S + L+
Sbjct: 376 LVARGVAPGRTVGAGLRAARDLWLASGCPDDAQARERLI 414
>gi|209545131|ref|YP_002277360.1| polynucleotide adenylyltransferase region [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532808|gb|ACI52745.1| Polynucleotide adenylyltransferase region [Gluconacetobacter
diazotrophicus PAl 5]
Length = 420
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 107/390 (27%), Positives = 179/390 (45%), Gaps = 8/390 (2%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
++ +VGG VRD L V D+D+AT PD+V+ KV+ T +++GT+ + +
Sbjct: 36 RARLVGGVVRDLLAGRPVSDLDLATPEPPDQVLAALEAAGIKVVATGLAHGTVTAVIAGR 95
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
++ITTLR D TDGR+A V +T DW D+ RRDFTINA+ + G V D GG DL
Sbjct: 96 PYEITTLRRDERTDGRHAVVAWTDDWAEDAARRDFTINAMSCGRDGVVHDAFGGRADLEA 155
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL--KILSSERI 205
++F+GD RI ED LR+LRFFRF A YG+ D+ + A A LS+ER+
Sbjct: 156 GHVRFVGDPATRIREDALRVLRFFRFHARYGQGTPDAAAMAAIADAAAAGALSRLSAERV 215
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265
WSE+ ++L + ++ M G+ + + + L L++++ A D++L
Sbjct: 216 WSELRRILSGPAVMESLGLMERTGVLARLLPEGYD--LPALARLVAA----GAPPDAILF 269
Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
VL + + + ++ + + +
Sbjct: 270 LGVLARATPGLLAARLRLSRAEAASLASLGVTADSAAPDPEVPEPGADDDARRRMLANEA 329
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385
L + + +D++ +P+FPL G DVV G+ G +VG +L
Sbjct: 330 AEILVRRSWRVQAERVGAPSAAWDGLRADLLARARPVFPLAGRDVVAAGVAAGPRVGAVL 389
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ W+ + + L +++A +
Sbjct: 390 ERVRDWWMAGGCRAGRRACMAQLERMVADT 419
>gi|162149125|ref|YP_001603586.1| tRNA nucleotidyltransferase [Gluconacetobacter diazotrophicus PAl
5]
gi|161787702|emb|CAP57298.1| putative tRNA nucleotidyltransferase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 427
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 107/390 (27%), Positives = 179/390 (45%), Gaps = 8/390 (2%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
++ +VGG VRD L V D+D+AT PD+V+ KV+ T +++GT+ + +
Sbjct: 43 RARLVGGVVRDLLAGRPVSDLDLATPEPPDQVLAALEAAGIKVVATGLAHGTVTAVIAGR 102
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
++ITTLR D TDGR+A V +T DW D+ RRDFTINA+ + G V D GG DL
Sbjct: 103 PYEITTLRRDERTDGRHAVVAWTDDWAEDAARRDFTINAMSCGRDGVVHDAFGGRADLEA 162
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL--KILSSERI 205
++F+GD RI ED LR+LRFFRF A YG+ D+ + A A LS+ER+
Sbjct: 163 GHVRFVGDPATRIREDALRVLRFFRFHARYGQGTPDAAAMAAIADAAAAGALSRLSAERV 222
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265
WSE+ ++L + ++ M G+ + + + L L++++ A D++L
Sbjct: 223 WSELRRILSGPAVMESLGLMERTGVLARLLPEGYD--LPALARLVAA----GAPPDAILF 276
Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
VL + + + ++ + + +
Sbjct: 277 LGVLARATPGLLAARLRLSRAEAASLASLGVTADSAAPDPEVPEPGADDDARRRMLANEA 336
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385
L + + +D++ +P+FPL G DVV G+ G +VG +L
Sbjct: 337 AEILVRRSWRVQAERVGAPSAAWDGLRADLLARARPVFPLAGRDVVAAGVAAGPRVGAVL 396
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ W+ + + L +++A +
Sbjct: 397 ERVRDWWMAGGCRAGRRACMAQLERMVADT 426
>gi|222529695|ref|YP_002573577.1| tRNA adenylyltransferase [Caldicellulosiruptor bescii DSM 6725]
gi|222456542|gb|ACM60804.1| tRNA adenylyltransferase [Caldicellulosiruptor bescii DSM 6725]
Length = 394
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 99/400 (24%), Positives = 175/400 (43%), Gaps = 19/400 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + ++ LN+ K+ +VGG +RD L++ +D DIAT P+ V+ +F K
Sbjct: 4 LKNEP-MKVIRTLNQHGFKAYLVGGCLRDYLLSKEPKDFDIATDAKPEDVIHLFE----K 58
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
IPT I +GT+ +I ++TT R + R+ KV FT D RRDFTINA+
Sbjct: 59 TIPTGIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMA 118
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+IDY GG+ DLRN+ ++ +G+ H R ED LRILR RF I++
Sbjct: 119 YHPDEGLIDYFGGIEDLRNKIVRCVGNPHERFFEDALRILRCIRFATQLSFV-IENKTFE 177
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K LK +S ERI E++K LE+KN + +Y + I + +I L
Sbjct: 178 ALKSLKHLLKKISKERINIELSKTLESKNSSYGLELLYESSVGSIIIPEYSQIYLY---- 233
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ + + F + F + +D + + + ++ + N
Sbjct: 234 LSQVDFDFIPTKFKVPAFFACL--KDGILVEKLMRDLKFEKKKINAAVKLSNYLTI---- 287
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
KL + +I + H+ + + K L+G+
Sbjct: 288 -ECSHDKLVKKIFFEEEKEAEEILTTISILKSDHRILQIFNDLKRENKLIHKKDVQLSGE 346
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
D++ G+ G+ +G +L + + + + +++D+ + +
Sbjct: 347 DLLVLGLR-GEMIGKVLNSVYEYILENPEKNNKDDILNYV 385
>gi|170594816|ref|XP_001902140.1| polyA polymerase family protein [Brugia malayi]
gi|158590356|gb|EDP29010.1| polyA polymerase family protein [Brugia malayi]
Length = 480
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 118/423 (27%), Positives = 192/423 (45%), Gaps = 19/423 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+LI + L K + + + GGAVRD LM + DID AT P+++ +F + +
Sbjct: 46 LFTPELIKLNDLFKKNDFQLRMAGGAVRDLLMGIKPCDIDFATNATPEKMKELFLREGIR 105
Query: 70 VI-PTSISYGTIKIICR-KKYFDITTLRSDLITD------------GRYAKVVFTRDWKA 115
++ +GTI K+ F+ITTLR GR AK+ FT +W+
Sbjct: 106 MLNKNGEEHGTITCRIDDKENFEITTLRHVNFCYIIHFEQIDTVCDGRRAKIEFTTNWQL 165
Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
D+ RRD T+N+L+ D G VIDY GG+ DL R I F+GDA+ RI EDYLRILR+FRF+
Sbjct: 166 DANRRDLTVNSLFLDLDGTVIDYFGGIKDLEERKIVFVGDANQRIQEDYLRILRYFRFYG 225
Query: 176 H--YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
+ D L A I + GLK +S ERIW E+ K+ + + M
Sbjct: 226 RLAIDGEMHDKATLDAIISNRNGLKDISGERIWMELKKICVGRLGGAVLTTMLKRCNLAS 285
Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
+ ++ ++ + + KI+++ L + + I K S +
Sbjct: 286 LLGLPEKADTVYFCKLH---KRYYPKIEAMTLLSSLFTEMGQIEIFHRRCKLSYAEKTLT 342
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353
I + SI K + + + KI + + ++++
Sbjct: 343 EFIVEHRDEAEKNVNSILFFKNILLIEERLHKFTRKKIQTSREKVIELAKYAMVNDELIN 402
Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
++ W+ P FP+ G D++ I PG V IL + Q WI S + +S+E+L + +
Sbjct: 403 ELSIWEMPTFPIGGIDLMHNNISPGPHVKQILDYLFQIWIESEWMISKEELLKHINDIEW 462
Query: 414 SSQ 416
+ +
Sbjct: 463 TDK 465
>gi|282882323|ref|ZP_06290953.1| tRNA adenylyltransferase [Peptoniphilus lacrimalis 315-B]
gi|281297830|gb|EFA90296.1| tRNA adenylyltransferase [Peptoniphilus lacrimalis 315-B]
Length = 445
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 105/438 (23%), Positives = 184/438 (42%), Gaps = 44/438 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D D+ ++L L+ KS IVGG +RD L+ + D DI T P +V +F + YK+
Sbjct: 2 DKDVFDLLEKLDNHGYKSYIVGGCLRDILLGIRPNDFDITTNARPSQVKEVFRE--YKIF 59
Query: 72 PTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I YGTI + R + ++ITT R + R +V+F D RRDFTINA+
Sbjct: 60 HYGIKYGTITVEYRDRLYEITTFRSEGTYSDNRRPDRVLFLDSIDDDLARRDFTINAMAM 119
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D+ + D G+ DL+N+ I+ GDA+ RI ED LRILR RF + +D + A
Sbjct: 120 DKSYNIYDPFNGIRDLKNKIIRACGDANKRIEEDALRILRAIRFATRFKFY-LDEELFDA 178
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ LK ++ ERI+SEI K++ NP + M GI +F +++
Sbjct: 179 ISLNRNLLKNIARERIFSEICKIITYDNPSYGFLLMEETGILDILFPSLRKTVGFDQKTP 238
Query: 250 IEAEQVFEW--------KIDSLLRFIVLISW----------------------QDKKSIL 279
+F+ D +RF +
Sbjct: 239 WHDRNLFDHLLCVMDNVPNDLAIRFAAIFHDIAKPLTLKIDGDGTGHFLGHDALGATMAE 298
Query: 280 SMAKKFSLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
+ K + P+ + + + Q+ ++ +++ G + ++ ++ A
Sbjct: 299 DILKYYKAPKALIEKVSILIKEHMKVQEVMTDKALRRQIKRVGRENILDLYELLYADCVC 358
Query: 339 NLTHQD-------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
+D I ++L + K+ + G D+++ G GK +G IL + +
Sbjct: 359 TRYDRDGSFILNRKKRIEELLDEKEMKKEKFLEINGYDLIELGFH-GKIIGQILKYAENL 417
Query: 392 WINSSFQLSQEDLHHLLR 409
++ + +E L ++
Sbjct: 418 VLSDTSLNKKEILLEKIK 435
>gi|171913058|ref|ZP_02928528.1| metal dependent phosphohydrolase [Verrucomicrobium spinosum DSM
4136]
Length = 439
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 96/441 (21%), Positives = 172/441 (39%), Gaps = 46/441 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++I+ L + ++ GG VRD LM +D DIAT+ PD V R+F K+
Sbjct: 3 KTAVSIVRRLVEAGHQAVFAGGCVRDHLMGKEPKDYDIATSARPDEVQRLFPKS----FA 58
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA-D 130
+G I + + F+I T R+D DGR + V + D+ RRDFT+N L+
Sbjct: 59 VGAHFGVILVREGQHSFEIATFRNDGEYADGRRPESVTFTTAEEDAHRRDFTVNGLFYDP 118
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+V+DYVGG DL + ++ IGD R ED+LR+LR RF G I+ A
Sbjct: 119 INDEVLDYVGGRQDLARQVLRAIGDPRKRFEEDHLRLLRAVRFATVLGF-EIEPGTWAAM 177
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-------- 242
++ + +S+ERI E++++L N + + + G+ + ++ +
Sbjct: 178 LEMAPKITSISAERIREELSRILLHPNRVRGFDLLVSSGLMASVLPEILVLQGCEQPPQF 237
Query: 243 --------------------------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK 276
L I F D +RF +
Sbjct: 238 HPEGDVFIHTRIMLGLLPEQVSLSLVWSVLLHDIAKPATFSRDPDGRIRFNGH-DKLGAE 296
Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI-FLAL 335
+ ++ P ++ + + K + I +L ++++ +
Sbjct: 297 MAEEILRRLKYPNDVIEPTVEAVANHMVFKDVQKMRISRLKRFMARPGFEDEMELHRVDC 356
Query: 336 HYNNLTHQDTCFILQVLSDIIHWK---KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
+N + FI Q + H P + G +++ GIP G +VG +L +
Sbjct: 357 QSSNGFSDNYDFIRQKQEEFGHDPLPLIPKPLINGHELMSLGIPKGPQVGELLTAVQNLQ 416
Query: 393 INSSFQLSQEDLHHLLRKLIA 413
+ S+E + + +
Sbjct: 417 LEGVLTSSEEAMAWVKENWKS 437
>gi|261367214|ref|ZP_05980097.1| poly(A) polymerase [Subdoligranulum variabile DSM 15176]
gi|282570813|gb|EFB76348.1| poly(A) polymerase [Subdoligranulum variabile DSM 15176]
Length = 456
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 88/448 (19%), Positives = 147/448 (32%), Gaps = 48/448 (10%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
D + +L L+ + +VGG VRDSL+ D DI T+ PD++ +F+ + I T
Sbjct: 11 DAMWLLQTLHDAGYSAYVVGGCVRDSLLGRRPGDWDICTSARPDQLRALFADQQL--ILT 68
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYADQ 131
+GT+ ++ ++ITT R D F + D RRDFTINA+
Sbjct: 69 GEKHGTVGVVLHGSPYEITTYRLDGTYRDHRHPDKVQFVSELAEDLARRDFTINAMAYAP 128
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
VID GG DL I+ +GD R ED LRILR RF A + A
Sbjct: 129 GEGVIDLCGGRKDLAAGIIRCVGDPEARFAEDALRILRALRFAARLDFALDPATEAAARE 188
Query: 192 KAKKG-------------------LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
+ + + + P F
Sbjct: 189 ARDSLQAVSAERIYTELDGLLMAQYAGKTLAQYGEILAGAVPEVGPCIGCTQPGRWHCFD 248
Query: 233 EIFLDVQEISLDQL-------SQVIEAEQVFEWKIDSLLR--------FIVLISWQDKKS 277
++ L ++V+ L R + +
Sbjct: 249 VWQHTAAAVTALDLRGQDTRGARVLRWATFLHDIAKPLCRSVGPDGAAHFKGHNQRGAAV 308
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA-LH 336
++ ++ P + + + I K YG + + A L
Sbjct: 309 ARAILRRLKAPSYLLEGAVGLIAIHDAPLPEGDAAILKCLNRYGAVSLRRLCALKYADLD 368
Query: 337 YNNLTHQDTCFILQV---------LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
+ LT + C V LS + + G D+++ G+P G VG +L
Sbjct: 369 AHALTPEVACRREDVTIFENRMTELSKNGCFTIRQLAVNGSDLMEAGLPAGPAVGRVLHA 428
Query: 388 CKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ + ++ L ++L+
Sbjct: 429 LLSAVMEGRIENQRDTLLREAQRLLREC 456
>gi|42780739|ref|NP_977986.1| tRNA CCA-pyrophosphorylase [Bacillus cereus ATCC 10987]
gi|73619740|sp|Q73AV7|CCA_BACC1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|42736659|gb|AAS40594.1| polyA polymerase [Bacillus cereus ATCC 10987]
Length = 397
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 86/401 (21%), Positives = 177/401 (44%), Gaps = 15/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A
Sbjct: 121 EEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + A+ + +F L ++S ++L +
Sbjct: 180 ETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLF--SHLPYLQMSEERLLKAT 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ F + ++ ++ KFS + + +K
Sbjct: 238 QYNWDSFETDIEAWAFFLYCIGEEHPAVFLRQWKFSNKKIKDIVAVLLTVRKRKEKDWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + H + + + + +TG+D+
Sbjct: 298 V----LLYKTGIHIAEMAERVYEAM-IESYDHTSVKRVQTLFQALPIKNRQEMNVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG V ++ ++ + + +E + L++
Sbjct: 353 LNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393
>gi|289550762|ref|YP_003471666.1| tRNA nucleotidyltransferase [Staphylococcus lugdunensis HKU09-01]
gi|315658258|ref|ZP_07911130.1| polyA polymerase family protein [Staphylococcus lugdunensis M23590]
gi|289180294|gb|ADC87539.1| tRNA nucleotidyltransferase [Staphylococcus lugdunensis HKU09-01]
gi|315496587|gb|EFU84910.1| polyA polymerase family protein [Staphylococcus lugdunensis M23590]
Length = 400
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 97/409 (23%), Positives = 180/409 (44%), Gaps = 24/409 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L+ + + ++ VGG+VRD +M + DIDI T+ PD + IF IP
Sbjct: 7 EQAKPLLTKIQQHGYEAYFVGGSVRDYIMGRDIHDIDITTSATPDEIETIFQH----TIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
++GTI ++ + +++TT R + R ++V F R+ D RRDFT+NA+ D
Sbjct: 63 IGKAHGTINVVYGQHNYEVTTFRAEEEYTDHRRPSEVTFVRNLYQDVERRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++ DY GG D++ I+ +G+ H R ED LRILR RF A G ID+ +A
Sbjct: 123 KSYQIYDYFGGQADIKQHIIRTVGEPHERFEEDALRILRGLRFEAQLGF-TIDTTTFLAM 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ LS ERI E+ KL++ ++ HM G+F + +
Sbjct: 182 QQRVADTAYLSIERIIVELKKLIQGHYVSSSYKHMIQLGLFNH---------IPFFESID 232
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + + L L+ + + L+ K + ++ L+S K S
Sbjct: 233 MNKFIVTEPMSFELWIASLLFATNSQFSLTSLKISNNEKQKIKQLLSLLQLLNKIK--SK 290
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLA-----LHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+++ L Y YG ++ L + N + I + +I ++ +
Sbjct: 291 QDLRLLVYDYGSHSLLEILNHRQMFQDQHIKVGNPVIINPEVIHDISQSLIINQRQDIAI 350
Query: 366 TGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+G D++ + G + +L + +N++ Q ++E + ++K +
Sbjct: 351 SGYDLINFFNKKRGPWIKTVLRMIEVAIVNNNVQNNKEQILKWVKKHVE 399
>gi|210623839|ref|ZP_03294088.1| hypothetical protein CLOHIR_02039 [Clostridium hiranonis DSM 13275]
gi|210153334|gb|EEA84340.1| hypothetical protein CLOHIR_02039 [Clostridium hiranonis DSM 13275]
Length = 448
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 95/441 (21%), Positives = 173/441 (39%), Gaps = 55/441 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
I+ + K ++ VGG +RDSL+ D DIAT+ P+ +M IF + T I +
Sbjct: 14 IIEKIEKNGFEAFAVGGCIRDSLLGRVPNDWDIATSAKPEDIMNIFEN----TVETGIEH 69
Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKV 135
GT+ ++ K+ +++TT R D TDGR+ V FT + + D RRDFTINA+ + +
Sbjct: 70 GTVTVVIDKEPYEVTTYRIDGDYTDGRHPDSVEFTENIEEDLSRRDFTINAMAYNNSTGL 129
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
+D GG +DL+N+ I+ +GD R ED LR++R RF A E +I++D A +
Sbjct: 130 VDVFGGRDDLKNKVIRCVGDPIKRFEEDALRMMRGIRFSAQL-EFSIENDTFKAIEEMSD 188
Query: 196 GLKILSSERIWSEI-----------NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ +S ERI E E+ N + +Y + + +
Sbjct: 189 LISAVSIERINVEFTKTLMSDAKKIMIYHESGILKNILQELYKIDSEDY-NREFSAVEMI 247
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
++ + FI + ++ + KK +
Sbjct: 248 KMGVNCADLCKKDLACRLAGFFIYINEAIGLENTRKILKKMRYDNKTISKACELLKYGMR 307
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD-------------------- 344
+ + ++K L M+ L A + +
Sbjct: 308 NISNNKEDLKYLLMKLDSVEMLEDLIDLKAAEVDTYLEERKSKFEEKSEEEKKIESVGIE 367
Query: 345 ----------------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
+ +++ + ++ + G D++ GI PGK++G +L
Sbjct: 368 VLEAFTVEALIVLNNVENTLKEIVDNGECFRVKDLDINGKDLIAAGIKPGKEIGEMLNKI 427
Query: 389 KQEWINSSFQLSQEDLHHLLR 409
+E I + +E L +++
Sbjct: 428 LKEVIKNPDINKKEKLLEMIK 448
>gi|302531336|ref|ZP_07283678.1| tRNA adenylyltransferase [Streptomyces sp. AA4]
gi|302440231|gb|EFL12047.1| tRNA adenylyltransferase [Streptomyces sp. AA4]
Length = 481
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 90/454 (19%), Positives = 170/454 (37%), Gaps = 57/454 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +VGG+VRD+L+ D+D T PDRV++I S+ V
Sbjct: 18 SPLADELAERFARAGHSLYLVGGSVRDALLGRLSSDLDFTTDARPDRVLQIVSEWGDAVW 77
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I++GT+ + +ITT R+D GR +V F + D LRRDFT+NA+ D
Sbjct: 78 DVGIAFGTVGVTKNGTTLEITTFRADSYDRVGRNPEVTFGDTIEGDLLRRDFTVNAMAID 137
Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
GK ID G++ LR + + +D LR++R RF A G
Sbjct: 138 LVGKTFIDPHDGMDALRLKVLDTPALPQESFADDPLRMMRAARFSAQLGFTAAPRVVEAM 197
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------- 238
+ + + +++ER+ +E++KL+ A +P + + + G+ + ++
Sbjct: 198 T-SMAEEIDRITAERVQTELSKLMLAPDPRPGLELLVDTGLADRVLPELPGMRLAIDEHH 256
Query: 239 -----QEISLDQLSQVIEAEQVFEW--KIDSLLRFIVLISWQDKK--------------- 276
+ SL L+Q I E+ E + D +LR L+ K
Sbjct: 257 QHKDVYQHSLTVLAQAIALEKSHEPTSEPDLVLRLAALLHDIGKPATREFTPGGGVSFHH 316
Query: 277 -------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
+ +EI + + E Y+ ++
Sbjct: 317 HEVVGARMARKRLRALKYSKEIVEQVSQLVFLHLRFHGYGGGEWTDSAVRRYVTDAGDLL 376
Query: 327 AKLKIFLALHYNNLTHQDTCFI----------LQVLSDIIHWKKPLFPLTGDDVVK-YGI 375
+L + + + ++ + + + L G+++++ G+
Sbjct: 377 TRLHKLVRADSTTRNKRKAAALQATYDDLEARIERIKEQEDLDRVRPDLDGNEIMRLLGL 436
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
PPG +VG K+ ++ E + L +
Sbjct: 437 PPGPQVGRAWKFLKELRLDRGPLDHDEAVAELKK 470
>gi|253771292|ref|YP_003034142.1| poly A polymerase family protein [Clostridium botulinum D str.
1873]
gi|253721444|gb|ACT33736.1| poly A polymerase family protein [Clostridium botulinum D str.
1873]
Length = 470
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 103/437 (23%), Positives = 174/437 (39%), Gaps = 47/437 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ L + ++ IVGG VRDSL+ D DI T+ LP+ V+ IF Y ++PT
Sbjct: 39 VNYIIHKLQEFNYEAYIVGGCVRDSLLEKKPNDWDITTSALPNEVINIFKNLGYTILPTG 98
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
+ +GT+ I+ +++++TT R D + R+ FTR+ K D RRDFTIN++ + +
Sbjct: 99 LKHGTVTIVINNEHYEVTTYRIDGEYEDNRHPNEVEFTRNLKEDLNRRDFTINSMAYNHK 158
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+IDY NDL +R IK +GD R ED LRILR +RF A K +
Sbjct: 159 DGLIDYFNSKNDLDSRIIKCVGDPVKRFSEDALRILRAYRFAAQLDFKIENKTLNATRQL 218
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
I LL +Y GI K IF ++ + + +
Sbjct: 219 KGNLKNISIERIRDEINKILLTDST---IFFQLYKFGILKIIFPELHQCHNVEQNSPYHM 275
Query: 253 EQVFEWKIDSLLRFIVLISW------------------------------QDKKSILSMA 282
+ +F I+S+L + +
Sbjct: 276 KNLFNHIINSVLNIEPKLHLKLTMLLHAICTVQCKTTDEKGIDYFHNHEELSSYKAKKIL 335
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN---- 338
K+ + + N+K S I+KL L G+ LK+ A
Sbjct: 336 KRMKYDNNTINKVSILIKYH-NRKIDSNKSIRKLLSLIGEDNFRDLLKVKEADIKAQNLK 394
Query: 339 ------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
N + + ++LS + + G D+++ G GK +G+IL + ++
Sbjct: 395 YYHERHNKLIEIEARLNEILSKNQCFLLKDLKVNGRDLLELGY-SGKDIGDILNNLLEKV 453
Query: 393 INSSFQLSQEDLHHLLR 409
+ + + L +++
Sbjct: 454 LENPDLNDKNKLISIIK 470
>gi|222152919|ref|YP_002562096.1| tRNA CCA-pyrophosphorylase [Streptococcus uberis 0140J]
gi|254813700|sp|B9DRX9|CCA_STRU0 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|222113732|emb|CAR41700.1| CCA-adding enzyme [Streptococcus uberis 0140J]
Length = 403
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 99/400 (24%), Positives = 182/400 (45%), Gaps = 18/400 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL + + ++ VGG VRD L++ + D+DIAT+ P+ IFS + +
Sbjct: 13 ALPILKKIKEAGFEAYFVGGGVRDILLDRPIHDVDIATSSYPEETKAIFS----RTVDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++ITT R++ + R + V F R + D RRDFT+NAL D+
Sbjct: 69 IEHGTVLVLENDAEYEITTFRTEDIYVDYRRPSNVSFVRSLEEDLKRRDFTVNALALDET 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GL DL+ + ++ +G A R ED LRI+R FRF A I+ + A
Sbjct: 129 GQVIDKFHGLQDLKRKELRAVGKAEERFQEDALRIMRGFRFAASLDF-KIEDETFEAMKT 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ +S ER + E++KL A N + + + L+ ++ L + +
Sbjct: 188 HAHLLQKISVERSFIELDKLFMAPNWKLGLTYFIEAQAYNYLPGLENRQSELTGMMDHFD 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
A VF+ + I+ +S +K+ L K + ++ +++ + K S
Sbjct: 248 AHFVFDSSEQAWANMIIALSLDKEKAFLKSWKTSNDFQKQVTQIVTLYR-----KRESAL 302
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
K Y+YG + I + A D +++ D+ + K + G ++
Sbjct: 303 LSKMDLYMYGKEAAILSENLRKA----KGLPTDFNHMMRTYDDLTIYDKHEIVVNGRYLM 358
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
K + G ++G++L ++ + + D+ + K
Sbjct: 359 EKLNMKAGPQLGHLLKKVEKAIVEGTLANKVGDIEAFIMK 398
>gi|301053173|ref|YP_003791384.1| poly(A) polymerase [Bacillus anthracis CI]
gi|300375342|gb|ADK04246.1| poly(A) polymerase [Bacillus cereus biovar anthracis str. CI]
Length = 397
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 87/401 (21%), Positives = 178/401 (44%), Gaps = 15/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A
Sbjct: 121 EEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + A+ + +F L ++S ++L +
Sbjct: 180 ETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLF--SHLPYLQMSEEKLLKAT 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + F + ++ ++ KFS + + +K
Sbjct: 238 QYKWDSFEADIEAWAFFLYCIGEEHPAVFLRQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + H + + + + +TG+D+
Sbjct: 298 V----LLYKTGIHIAEMAERVYEAM-IESYDHTAVNRVQTLFQALPIKSRQEMNVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG V I+ ++ + + +E + L++
Sbjct: 353 LNWASKKPGPWVAEIIHKIEEAIVQGNVVNEKECIREWLQE 393
>gi|227486244|ref|ZP_03916560.1| possible tRNA adenylyltransferase [Anaerococcus lactolyticus ATCC
51172]
gi|227235780|gb|EEI85795.1| possible tRNA adenylyltransferase [Anaerococcus lactolyticus ATCC
51172]
Length = 449
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 96/433 (22%), Positives = 165/433 (38%), Gaps = 43/433 (9%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
+L L KS +VGG VRD LM D+DIAT PD + +F YK +
Sbjct: 9 EEVLFRLEDKGYKSYLVGGFVRDKLMGKPPSDVDIATKAFPDEIKEVFKD--YKTLDVGK 66
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133
++GTIK++ + ++ITT R D R V+F + D RRDFTINA+ +
Sbjct: 67 AFGTIKLVADDRDYEITTFRKDFSYKDKRRPGSVIFADTIEEDLKRRDFTINAMALSKD- 125
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
++ID GG DL + I+ +G+ + RI EDYLR LR RF A+ G + K
Sbjct: 126 ELIDPYGGQADLEAKIIRAVGNPYERINEDYLRALRAVRFAANLGFDIENDLKEAIRSKV 185
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
K I + I+K+L +P + + G+ IF +V+ +
Sbjct: 186 KNLAYISVERQTAE-IDKILLGPDPARGLRLLDETGLLGGIFPEVKAMVGFDQHSPHHNL 244
Query: 254 QVFEW--------KIDSLLRFIVLISWQDKKS----------------------ILSMAK 283
F+ +D +R L K S +
Sbjct: 245 DCFDHTLKVLEGTPLDLTIRLAALFHDTGKPSTFFLDENGNGRFFGHQKISKDLAEERLR 304
Query: 284 KFSLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL-- 340
+++ + + + + + +L G++ + + A +
Sbjct: 305 YLKYSKKLIEDVGVLIGRHMDSSNPYTEKSVARLLRRIGEENLKRLFDLQEADILATVHD 364
Query: 341 ----THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
+ + ++L + + G D+ K G G +G IL ++E + +
Sbjct: 365 DISNIDKGRNLLKEILEKKPVLSRKDLAINGRDLTKIGFDEGPDIGFILRKIEKEVFDGT 424
Query: 397 FQLSQEDLHHLLR 409
++ L + R
Sbjct: 425 LSNDRQILLNEAR 437
>gi|225017536|ref|ZP_03706728.1| hypothetical protein CLOSTMETH_01463 [Clostridium methylpentosum
DSM 5476]
gi|224949686|gb|EEG30895.1| hypothetical protein CLOSTMETH_01463 [Clostridium methylpentosum
DSM 5476]
Length = 449
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 88/441 (19%), Positives = 163/441 (36%), Gaps = 39/441 (8%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ LS L ++ IVGG VRD L+ D DI T+ LP MR F+ Y +I
Sbjct: 7 EQVRQALSKLRACGYEAYIVGGCVRDLLLGWEPDDYDITTSALPFETMRCFA--GYHIIE 64
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T + +GT+ + +ITT R + R V FTR + D RRDFTINA+
Sbjct: 65 TGVKHGTVTAVIDGMPLEITTYRIDGQYSDNRRPDSVTFTRSLREDLARRDFTINAMAYS 124
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ DY GG DL+++ I+ +GD R ED LRILR RF + G +
Sbjct: 125 PSNGLQDYFGGQQDLKDQMIRCVGDPQTRFEEDALRILRAVRFSSVLGFGMEPTTAAALL 184
Query: 191 IKAKKGLKILSS-------------------ERIWSEINKLLEAKNPLNAIVHMYNGGIF 231
+ + I + +++ P ++
Sbjct: 185 TRRGLLVHIARERVQVELNKLLLGRDVGRVLREYTEVLCEVIPEIIPCIGFEQHSRYHLY 244
Query: 232 KEIFLDVQ--EISLDQLSQ-----VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284
V E S ++L+ + + + + I+ + + K+
Sbjct: 245 DVWEHTVHTVERSPERLTVRLAMLLHDLAKPLTFSIEGGTGHFYSHQQKSADLAQEILKR 304
Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT--- 341
EI +++ + + S IK+ G++ + L + +
Sbjct: 305 LRYSGEITRRVVNLIRYHSVEFHGSAKAIKRWLGKLGEEELRELLLVQRSDLLGKDPSFW 364
Query: 342 ------HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
++ I ++++ + + G+D+ + G G+ +G +L + I+
Sbjct: 365 YELEELDENEQRINEIIAQNQCFTVAQLAVNGNDLREVGCTQGRLIGQLLEYLLGLVIDE 424
Query: 396 SFQLSQEDLHHLLRKLIASSQ 416
++E L + + + +
Sbjct: 425 ECPNNREALLSRANQYLVNRK 445
>gi|300791145|ref|YP_003771436.1| poly(A) polymerase [Amycolatopsis mediterranei U32]
gi|299800659|gb|ADJ51034.1| poly(A) polymerase [Amycolatopsis mediterranei U32]
Length = 478
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 94/459 (20%), Positives = 165/459 (35%), Gaps = 58/459 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + + +VGG+VRD+L+ D+D T PDRV++I S V
Sbjct: 16 SPLAEELAERFARAGHRLYLVGGSVRDALLGRRSGDLDFTTDARPDRVLKIVSGWGDAVW 75
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I++GT+ + + +ITT R+D GR +V F + D LRRDFT+NA+ D
Sbjct: 76 DVGIAFGTVGVTKKGMQLEITTFRADSYDRVGRNPEVTFGDSIEGDLLRRDFTVNAMAVD 135
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
ID GL+ LR R + +D LR+LR RF A
Sbjct: 136 LASKTFIDPHDGLSALRERVLDTPATPQESFADDPLRMLRAARFAAQLDFAAAPRVVDAM 195
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD------------ 237
+ + + +++ER+ +E++KLL A +P + + + G+ + +
Sbjct: 196 T-SMAEEIDRITAERVQAELSKLLLAADPRPGLELLVDTGLADRVLPEVAGMRLAIDEHH 254
Query: 238 ----VQEISLDQLSQVIEAEQVFEW--KIDSLLRFIVLISWQDKK--------------- 276
V + SL L+Q I+ E E + D +LR L+ K
Sbjct: 255 QHKDVYQHSLTVLAQAIDLESSHEPTSEPDLILRLAALLHDVGKPATREFQEGGGVSFHH 314
Query: 277 -------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
+ +EI + + E Y+ ++
Sbjct: 315 HEVVGARMARKRLRALKFSKEIVDDVSQLVFLHLRFHGYGKGEWTDSAVRRYVTDAGPLL 374
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGI 375
+L + + + D+ + L G+ ++ G+
Sbjct: 375 TRLHKLVRADCTTRNRRKAAVLQATYDDLEARIAALKAKEDLDRVRPDLNGEQIMALLGL 434
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
PG VG K+ ++ L ++ L+K A
Sbjct: 435 KPGPDVGKAWKFLKELRLDRG-PLDHDEAVAELKKWAAE 472
>gi|324325652|gb|ADY20912.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 397
Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats.
Identities = 87/401 (21%), Positives = 176/401 (43%), Gaps = 15/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMGIFPRH----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++GK++D G ++ R I +G+A R ED LR++R RF + G ++++ A
Sbjct: 121 EEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + + + +F L ++S ++L +
Sbjct: 180 ETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERLLKAT 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ F + ++ S+ KFS + + +K
Sbjct: 238 QYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + H + + + + +TG+D+
Sbjct: 298 V----LLYKTGIHIAEMAERVYEAM-IESYDHTSVNRVQTLFQALPIKSRQEMNVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG V ++ ++ + + +E + L++
Sbjct: 353 LNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393
>gi|317055702|ref|YP_004104169.1| metal dependent phosphohydrolase [Ruminococcus albus 7]
gi|315447971|gb|ADU21535.1| metal dependent phosphohydrolase [Ruminococcus albus 7]
Length = 444
Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats.
Identities = 84/438 (19%), Positives = 159/438 (36%), Gaps = 48/438 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ ++ +L + ++ IVGG VRD++M + D D+ T PD +++IFS + I T
Sbjct: 9 VTAVIEILEQNGYEAYIVGGCVRDAMMGVEPHDYDVCTDCTPDDMVKIFS--GFHTIETG 66
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ +GT+ ++ ++TT R + R V F D K D RRDFT+NA+ + +
Sbjct: 67 LKHGTLTVMSEHMPVEVTTYRSDGEYTDHRRPDSVKFETDLKEDLKRRDFTVNAMCFNPK 126
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+D G NDL + I+ +G+A R ED LRI+R RF + + + K
Sbjct: 127 NGTVDLFDGRNDLNEKVIRCVGNAEDRFDEDALRIMRALRFASTLDFRIEEYTAAAMRKK 186
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ I + L + I I ++ + + +
Sbjct: 187 SHLLNAISAERIFSELKKLLCGKAVCRIMLE---YSDIIGVILPEIIPCIGCEQNNIHHC 243
Query: 253 EQVFEW--------KIDSLLRFIVLISWQDKKS----------------------ILSMA 282
V+E + D LR +L K ++
Sbjct: 244 YDVYEHICHSIKYIEADEDLRLTMLFHDIGKPQKKVTDDDGVDHFKLHQLCSGDIAEAVL 303
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
+ + + S + N+ +K+ Y + + LK+ A +
Sbjct: 304 TRLKSSNKTLKRVRSLVIEHDNRIYPKRRSVKRFISKYDHEFYVDWLKVRRADTLAQSEY 363
Query: 343 QDTCFI----------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
+ ++ ++ K + G DV+ G G ++ N L
Sbjct: 364 MRAEKLAELDQLEKLGEEIKEEMCCLKTSDLAINGHDVIALGFK-GAEIKNALNAALDAV 422
Query: 393 INSSFQLSQEDLHHLLRK 410
I+ + ++ L L++
Sbjct: 423 IDEVIENERDALLGYLKE 440
>gi|47565999|ref|ZP_00237037.1| polyA polymerase [Bacillus cereus G9241]
gi|47556916|gb|EAL15246.1| polyA polymerase [Bacillus cereus G9241]
Length = 397
Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats.
Identities = 87/401 (21%), Positives = 177/401 (44%), Gaps = 15/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMGIFPRH----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++GK++D G ++ R I +G+A R ED LR++R RF + G ++++ A
Sbjct: 121 EEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L+ ++ ERI E KLL + + + +F L ++S ++L +
Sbjct: 180 ETYGQLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERLLKAT 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ F + ++ S+ KFS + + +K
Sbjct: 238 QYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + H + + + + +TG+D+
Sbjct: 298 V----LLYKTGIHIAEMAERVYEAM-IESYDHTSVNRVQTLFQALPIKSRQEMNVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG V ++ ++ + + +E + L++
Sbjct: 353 LNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393
>gi|162449360|ref|YP_001611727.1| hypothetical protein sce1090 [Sorangium cellulosum 'So ce 56']
gi|161159942|emb|CAN91247.1| cca [Sorangium cellulosum 'So ce 56']
Length = 460
Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats.
Identities = 107/450 (23%), Positives = 182/450 (40%), Gaps = 52/450 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
D++ I L + + IVGG VRD L +D D+AT P+ V+ F KVIP
Sbjct: 13 EDVLGICRRLRERGKRGWIVGGCVRDLLRGQDAKDWDVATDARPEEVVAAFR----KVIP 68
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ R +++TTLR D +DGR F D AD RRDFT+NA+ D
Sbjct: 69 TGIQHGTVTVLVRGVPYEVTTLRGDGTYSDGRRPDRVEFVDDITADLARRDFTMNAIAID 128
Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-GEKNIDSDGLV 188
G +ID GG +DL + I+ +GD R ED LR+LR RF A G + +++ +
Sbjct: 129 PVDGHLIDPFGGRSDLEAKIIRAVGDPGERFAEDGLRVLRAARFAATLEGTLDPETERAM 188
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ ++ + + +S+ER+ E K + A+ P A M + ++ E + ++
Sbjct: 189 GTARSHQTFRCVSAERVRDEWLKAMRARRPSVAFEIMRRTELLAITCPEMIESVGCEQNR 248
Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQDKKSILSM------------------- 281
A V+ K + +LR L+ K
Sbjct: 249 -WHAYDVWGHAMACLDACKPEPILRVAALMHDIGKPRTREFSEKTKDYTFYEHERVGAEM 307
Query: 282 ----AKKFSLPREIRYFLISFFNCNFN--QKTLSIPEIKKLFYLYGDKVMIAKLKI--FL 333
+ + R +++ + T + +++ + +I
Sbjct: 308 ADPILTRLRFSNDERARIVALIRHHLICYDDTWTDAAVRRWLRRVTPALAPDLYEIGVAD 367
Query: 334 ALHYNNLTHQDTCFILQVLSDII-------HWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385
AL +D I ++ + + G+ ++K GIPP + VG +L
Sbjct: 368 ALGKGREATEDIATIGRLRERVDALLAAGAALSAKDLAVNGNRLMKELGIPPSRLVGELL 427
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ + E L R+L+AS
Sbjct: 428 ERLVELVTEEPEANTPERLLAAARELVASK 457
>gi|326201312|ref|ZP_08191184.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium papyrosolvens DSM 2782]
gi|325988880|gb|EGD49704.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium papyrosolvens DSM 2782]
Length = 448
Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats.
Identities = 104/447 (23%), Positives = 180/447 (40%), Gaps = 49/447 (10%)
Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66
K+ + ++++ LN+ ++ VGG VRDS++ + D DI T LP + ++F
Sbjct: 5 EKFDFPENAGHVINKLNEAGYEAYFVGGCVRDSILCKAPYDWDITTNALPADIKQLFD-- 62
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTI 124
K T I +GT+ ++ + ++TT R D R KV FT K D RRDFTI
Sbjct: 63 --KTYDTGIKHGTVTVLSGEMSLEVTTYRIDGDYKDFRRPEKVEFTSSLKEDLARRDFTI 120
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
NA+ + ++D+ GGL DL+ R IK +GD R ED LR+LR RF A G +I+
Sbjct: 121 NAMAYHPEHGLVDFFGGLKDLKKRVIKAVGDPKQRFREDALRMLRAIRFSAQLGF-SIEE 179
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
A + +SSER+ E+NK L +++PL+ +++ GI I + +
Sbjct: 180 ATFEAIKNNSALIANISSERVRDELNKTLVSQHPLH-FNYLHQTGILPYILPEFERCYKT 238
Query: 245 QLSQVIEAEQVFEW--------KIDSLLRFIVLISWQDKKS------------------- 277
+ V + D +LR+ +L+ K
Sbjct: 239 EQVNPYHVYNVADHTMFAVKSIDNDHILRWTMLLHDVGKPPRKTTDAKGIDHFYGHQAVS 298
Query: 278 ---ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
+ + +E ++ + + I+K GD++ LK+ A
Sbjct: 299 SQIAEKVLNRLRFDKESIKKIVLLVKHHDMDIEDNPKSIRKAINKIGDELFPLLLKVQKA 358
Query: 335 LHYNNLTHQDTCF----------ILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGN 383
+ S+ K + GDD++ G+ PG ++
Sbjct: 359 DKMAQNPDFLPERIIKWIKIEKIYSDIKSEQQCLNKKDMAVNGDDLILLIGMKPGIEIRE 418
Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLRK 410
+L + + ++ L L +K
Sbjct: 419 MLDYLCDCVLECPELNEKQKLLELAKK 445
>gi|223982596|ref|ZP_03632831.1| hypothetical protein HOLDEFILI_00105 [Holdemania filiformis DSM
12042]
gi|223965433|gb|EEF69710.1| hypothetical protein HOLDEFILI_00105 [Holdemania filiformis DSM
12042]
Length = 416
Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats.
Identities = 86/403 (21%), Positives = 149/403 (36%), Gaps = 22/403 (5%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
L LN+ ++ VGG VRD+L+ VQD+D+ T+ LP++ + F Y VIPT + +G
Sbjct: 13 LKCLNEAGYEAWWVGGCVRDTLLGRPVQDVDVTTSALPEQTIVCFRNAGYPVIPTGLKHG 72
Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYADQQGKVI 136
T+ ++ + ++TT RSD FTR D RRDFTINAL +
Sbjct: 73 TVTVMIQDIPIEVTTYRSDSDYQDHRHPESVRFTRSLWEDCARRDFTINALCWHPDLGLR 132
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
DY G DL+N+ I IG+ + R ED LRILR RF + G + +
Sbjct: 133 DYFHGQRDLKNKVIACIGNPYQRFDEDALRILRALRFASTLGFALDLGTRQALFHQEELL 192
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
+ + ++ + P ++ L Q +L + +A F
Sbjct: 193 RVLSAERIAREMEKMVVGLRWPE-----IFANNYEILAVLFPQLPALQSPQAIQKAFDTF 247
Query: 257 EWKIDSLLRFIVLISWQ--------DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ L + + L + + + LI +
Sbjct: 248 RFCPPVTLPRLACFFLETEQTPLVYCIDQALHWTGQLKFSNQNKKNLIQLVRYQNHPIPQ 307
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI---IHWKKPLFPL 365
++ L + +++ AL N LT + ++ +I +
Sbjct: 308 DRVSLRLLIHEL-PDRFGEWIQLQQAL--NRLTPEQAAHLIAASEEIRGHDCLTLKQLAI 364
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G D++ G P ++ +L + + L +
Sbjct: 365 NGADLIAAGCPR-PQISALLKQSLNAVMEDQIPNQKAALLRFV 406
>gi|303255341|ref|ZP_07341411.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS455]
gi|302597709|gb|EFL64785.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS455]
Length = 394
Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats.
Identities = 97/399 (24%), Positives = 179/399 (44%), Gaps = 17/399 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L K + ++GG+VRD+L++ + D+DIAT+ P+ +IF +T
Sbjct: 8 ALPVLEKLKKQALRLILLGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA D+
Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A
Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKT 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER + E +KLL A + M +L S D+L+++ +
Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDL 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F ++ S + L+ + ++ S K + R+ + ++ + +
Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSK 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ I L L + I + + K + G ++K
Sbjct: 300 RDCYRFD------IDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKDIQINGGILIK 353
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
YG PG +G IL + ++ + ++E +H LR+
Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392
>gi|257063620|ref|YP_003143292.1| tRNA nucleotidyltransferase/poly(A) polymerase [Slackia
heliotrinireducens DSM 20476]
gi|256791273|gb|ACV21943.1| tRNA nucleotidyltransferase/poly(A) polymerase [Slackia
heliotrinireducens DSM 20476]
Length = 467
Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats.
Identities = 94/459 (20%), Positives = 173/459 (37%), Gaps = 61/459 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
D +I+ L ++ + G VRD LM D+DI+T+ + + +FS +KV
Sbjct: 11 PDAASIVDALEAAGHEAWVTGSYVRDMLMGRIPHDLDISTSARWETIRDLFSSQGFKVYE 70
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRY-----------------AKVVFTRDWKA 115
T GT+ + +ITT R++ +G ++ FT +
Sbjct: 71 TGTDRGTVTVNTGAHLVEITTFRTEEPIEGTRIAFQNAEHRKLSVWEPSSRFRFTNSVEK 130
Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
D LRRDFT+NAL + ++D GG+ D+ N TI+ +G+ R +D LRILR RF +
Sbjct: 131 DLLRRDFTMNALAFNPNCGILDPFGGVKDISNETIRAVGEPSERFWQDPLRILRAARFAS 190
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G +++S A++ + LK ++RI +E +LL+ + AI M +
Sbjct: 191 QLGF-DVESRTKEAALASAPLLKHAPAQRIEAEFARLLQGDHARQAI--MDWIDVIGVFI 247
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDS--------LLRFIVLISWQDKKSILSM------ 281
+ + V E + +LR+ + K + +
Sbjct: 248 PEALPMKGLDQRTKYHIYDVLEHTAYTVSLAPQQRVLRYAAFLHDIGKPEVFRIDEEGVG 307
Query: 282 ----------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG--DK 323
+ L + + + + ++ + + ++K G +
Sbjct: 308 HSPGHAAAGAVISEQVCSRLKLREDEAAEICTLVGAHDDRISPTPRSVRKALRRLGGNVR 367
Query: 324 VMIAKLKIFLALHYNNLTHQDTCF---------ILQVLSDIIHWKKPLFPLTGDDVVKYG 374
++ L++ A + + VL + + G DV+ G
Sbjct: 368 MLRELLELKKADALAHAPEHQERAAIAEEVGLVLDDVLKKEAAFDIKDLAIDGTDVIARG 427
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+P G VG L I+ +++DL L IA
Sbjct: 428 VPAGPSVGAALEAALDAVIDELVNNTRDDLLAFLDDRIA 466
>gi|16803944|ref|NP_465429.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes EGD-e]
gi|224501296|ref|ZP_03669603.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL R2-561]
gi|255029019|ref|ZP_05300970.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes LO28]
gi|73619795|sp|Q8Y5Z8|CCA_LISMO RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|16411358|emb|CAC99983.1| cca [Listeria monocytogenes EGD-e]
Length = 393
Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats.
Identities = 76/397 (19%), Positives = 148/397 (37%), Gaps = 19/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQS----TYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ + +++++TT R++ R ++V F R + D RRDFT+NA+ D+
Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEH 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D G ++N+ IK +G A R ED LR++R RF + + +
Sbjct: 124 FALHDPFSGQEAIKNKAIKAVGKASERFHEDALRMMRGVRFLSQLDFQLDSETEKALESQ 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + + + L ++ +L +
Sbjct: 184 IGLLQHTSVERITVEWLKMIKGPAIRRAMDLLLKVEMETYLPGLKGEKKALTEFGSWDWG 243
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ D++ +V+ + + A K +
Sbjct: 244 KR---TTDDAIWLGLVVTVQPNNVNAFLKAWKLPNKTIQLVSKAYQYALKMK-----ETW 295
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + Y G V ++ + N H+ + Q + K +TG D++K
Sbjct: 296 LAEELYHAGKAVFSLVNELNIIRGKENNQHK----LSQAYEALPIHSKKDLAITGADLLK 351
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G G V L + + + + + L
Sbjct: 352 WSGESAGPWVKETLDKLECGVLCNEINNEKNQIKRWL 388
>gi|313637213|gb|EFS02729.1| CCA-adding enzyme [Listeria seeligeri FSL S4-171]
Length = 393
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 83/399 (20%), Positives = 155/399 (38%), Gaps = 19/399 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IFS
Sbjct: 6 KRALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKTIFSS----TFD 61
Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I++GT+ + + +++TT R++ R ++V F R + D LRRDFT+NA+ D
Sbjct: 62 TGIAHGTVTVRENGECYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLLRRDFTMNAIAMD 121
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++ ++ D G ++N+ IK +G A R ED LR++R RF +
Sbjct: 122 EKFQLHDPFSGRISIQNKEIKAVGKAQERFHEDALRMMRAIRFLSQLDFHLEKETEAALQ 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ + + + + + L + +L + +
Sbjct: 182 SQIELLQHTSVERITVEWVKMIKGPAVKRAMDLLLKVEMENFLPGLKGKASALKEFASWG 241
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
++ E I L V S ++ + K + LP + + + N+K
Sbjct: 242 WEKRTTENAIWLGLVTTVQPS-----NVTAFLKAWKLPNKTIQLVGKTYQYALNKKQ--- 293
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ Y G V +I + + N + + + K LTG D+
Sbjct: 294 VWSAEELYHAGVDVFSLVNEINVIQYGEN----QQETLNRAYQALSIHSKKDLALTGADL 349
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+K+ G + L ++ I + + L
Sbjct: 350 LKWSNEQAGPWLKETLEKIERAVILEEIDNEKNQIRRWL 388
>gi|217959117|ref|YP_002337665.1| tRNA CCA-pyrophosphorylase [Bacillus cereus AH187]
gi|226702038|sp|B7HL50|CCA_BACC7 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|217063697|gb|ACJ77947.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus AH187]
Length = 397
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 86/401 (21%), Positives = 177/401 (44%), Gaps = 15/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++GK++D G ++ R I +G+A R ED LR++R RF + G ++++ A
Sbjct: 121 EEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + A+ + +F L ++S ++L +
Sbjct: 180 ETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLF--SHLPYLQMSEEKLLKAT 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + F + ++ ++ KFS + + +K
Sbjct: 238 QYKWDSFEADIEAWAFFLYCIGEEHPAVFLRQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
Y G + +++ A+ + H + + + + +TG+D+
Sbjct: 298 V----FLYKTGIHIAEMAERVYEAM-IESYDHTAVNRVQTLFQALPIKNRQEMNVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG V ++ ++ + + +E + L++
Sbjct: 353 LNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393
>gi|332654007|ref|ZP_08419751.1| poly A polymerase [Ruminococcaceae bacterium D16]
gi|332517093|gb|EGJ46698.1| poly A polymerase [Ruminococcaceae bacterium D16]
Length = 437
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 82/437 (18%), Positives = 145/437 (33%), Gaps = 47/437 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + +L+ L ++ +VGG VRD L D D AT+ P+ +M + +
Sbjct: 6 DPRALEVLARLRASGYQAVLVGGCVRDFLRGKEPHDYDAATSARPEEIMSACAD--LHCV 63
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYA 129
PT + +GT+ ++C+ ++TT R + +DGR+ V FT D RRDFTINA+
Sbjct: 64 PTGLRHGTVTVLCQGLPVEVTTFRREGTYSDGRHPDQVSFTTSLTEDLARRDFTINAMAW 123
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D+ + D GG DL I+ +G+ R ED LRILR R A
Sbjct: 124 DED-GLADRFGGRADLEAGLIRCVGEPERRFQEDALRILRGLRLAAQLDFAIHPDTAQAI 182
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ + + + L + EI +
Sbjct: 183 RTETPRLAMVARERIGGEFLRLLCGPGACRV---LLDFPQTVCEIVPQLAPTVGFDQKNP 239
Query: 250 IEAEQVFEW--------KIDSLLRFIVLISWQDKKSILSM-------------------- 281
V+ + R L+ K + M
Sbjct: 240 HHVWDVYTHLVKTVEKVPPEPAPRLAALLHDVGKPATFFMDEGGAGHFYGHAEASARLCE 299
Query: 282 --AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
A + L R +++ + + + + G + + + A +
Sbjct: 300 NIAGQLRLDSATRNRVVTLVERHHLPLQPTQACVGRWLRRLGPGLFFQLIDLMKADGASC 359
Query: 340 LTHQDTCFILQ--------VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
L +Q L +L+ + G D + G+ G +G+ L +
Sbjct: 360 LPNQSAREELDEVADLAHTILAQAPCLTLKDLAVNGRDAMAAGL-SGPAIGHALNRLLDQ 418
Query: 392 WINSSFQLSQEDLHHLL 408
+ ++ L + L
Sbjct: 419 VAEGTLPNERDILLNHL 435
>gi|320108593|ref|YP_004184183.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Terriglobus saanensis SP1PR4]
gi|319927114|gb|ADV84189.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Terriglobus saanensis SP1PR4]
Length = 457
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 90/447 (20%), Positives = 166/447 (37%), Gaps = 49/447 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ ++ L + + VGG VRD LM + +D D+AT PD V+++F +
Sbjct: 14 QQKAALRVVERLRGVQFSAYFVGGCVRDLLMGHAPKDYDVATNACPDAVIKLFR----RT 69
Query: 71 IPTSISYGTIKII-CRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
P +G + + ++ T R R +V + + D LRRDFTIN +
Sbjct: 70 FPVGAHFGVVIVCDNDGSQTEVATFRADGAYEDGRRPTEVRYADTPQVDVLRRDFTINGM 129
Query: 128 YADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
D G+V+D+VGG +DL + ++ IG R ED LR+LR RF A +G ++
Sbjct: 130 MMDPVTGEVLDFVGGRDDLEAKILRAIGTPQVRFEEDKLRMLRAVRFAARFGF-TLEPRT 188
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS---- 242
L A + +S+ER+ E+ ++L + A + G+ +E+ +V ++
Sbjct: 189 LQAIQAQAPTINQVSNERVRDELTRMLTEGHARRAFELLDETGLLREVLPEVAKMKGVQQ 248
Query: 243 -------LDQLSQVIEAEQVFEWKIDSLLRFIVLISW----------------------- 272
D + + + L + L+
Sbjct: 249 PPQFHPEGDVWIHTLLLLEKLQAGCSMELGWAALLHDVGKPPTFRAPDPTHAKPRIRFDG 308
Query: 273 ---QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
++ + + + + + + + L + L
Sbjct: 309 HAEIGTTMARTICNRLRMSNDETEQICLLVANHMRFGDVMQMKPATLKRFFRLPKFDEHL 368
Query: 330 KIFL--ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
++ A + Q S KP LTG D++ G+ PG + +L
Sbjct: 369 RLHWMDASSAHGDLRLYDFAKQQYESAPPDTIKPALFLTGRDLIDAGLKPGPRFKLLLEQ 428
Query: 388 CKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ + E + +LLR+L+AS
Sbjct: 429 IEDAQLEGRITTKAEAI-NLLRELLAS 454
>gi|154500880|ref|ZP_02038918.1| hypothetical protein BACCAP_04565 [Bacteroides capillosus ATCC
29799]
gi|150270380|gb|EDM97706.1| hypothetical protein BACCAP_04565 [Bacteroides capillosus ATCC
29799]
Length = 438
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 94/438 (21%), Positives = 173/438 (39%), Gaps = 54/438 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMN-LSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +L+LL ++ +VGGAVRD +M + +D DIAT+ LP +V +FS Y +I
Sbjct: 5 PQVETVLALLEASGFEAFLVGGAVRDYVMGKRAAKDWDIATSALPQQVKAVFS--GYHLI 62
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
T + +GT+ ++ + +ITT R+D + +AD RRDFT+NAL +
Sbjct: 63 ETGLKHGTVTVVVDHQPIEITTYRTD--------SGCPSPSLRADLERRDFTMNALAYNP 114
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ V+D VGG D+ ++ GD R ED LRILR RF + YG ID+ A
Sbjct: 115 RTGVVDLVGGAGDIEKGIVRCTGDPDRRFREDGLRILRALRFASVYGM-EIDAATADAIR 173
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + L+ ++ ERI E+ +L KN + G+ ++ +
Sbjct: 174 RNQSLLRGVAVERIQVELTGILCGKNAAAVLSD--FAGVLAVTVPELAPMFGFAQHNPHH 231
Query: 252 AEQVFEW--------KIDSLLRFIVLISWQDKKSILSM---------------------- 281
+ V+ +LR+ L+ K S
Sbjct: 232 DKDVWNHTVAVVENVSPQPVLRWAALLHDIGKPLCFSRTEDGVGHFFGHAQKSALLAGDI 291
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN--- 338
+ R ++ + T +K+L +G++ +++ A
Sbjct: 292 LSRLRFDNAGRERIVRLVRYHDMPITADRKLVKRLLSKHGEETARQLIELHRADTLGQSD 351
Query: 339 ------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
+ + + ++L + + + G D++ G+ G+ +G +L C
Sbjct: 352 ICQYRLGILDEVDAMLEELLREERCFSLKDLAVDGSDMMGLGLT-GRDIGRMLQECLNAV 410
Query: 393 INSSFQLSQEDLHHLLRK 410
++ + L +
Sbjct: 411 LDERIPNERNALLAFAGR 428
>gi|321311714|ref|YP_004204001.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis BSn5]
gi|320017988|gb|ADV92974.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis BSn5]
Length = 397
Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats.
Identities = 92/398 (23%), Positives = 161/398 (40%), Gaps = 16/398 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L +L + ++ VGGAVRDS M ++ D+DIAT PD+V R+F + +
Sbjct: 8 ALPVLRILIEAGHQAYFVGGAVRDSYMKRAIGDVDIATDAAPDQVERLFQ----RTVDVG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GTI ++ + +++TT R++ R ++V F + D RRD TINA+
Sbjct: 64 KEHGTIIVLWEDETYEVTTFRTESDYVDFRRPSEVQFISSLEEDLKRRDLTINAMAMTAD 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
GKV+DY GG D+ + I+ +G R ED LR+LR RF + G + + A K
Sbjct: 124 GKVLDYFGGKKDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLGF-TLSPETEEAIAK 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
K L +S ER E KLL+ + A+ + ++KE+ + +I
Sbjct: 183 EKSLLSHVSVERKTIEFEKLLQGRASRQALQTLIQTRLYKELPGFYHKR-----ENLIST 237
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ + + S + ++ + + T
Sbjct: 238 SEFPFFSLTSREELWAALLINLGIALKDAPLFL---KAWKLPGKVIKEAIHIADTFGQSL 294
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G+K +++ KI L + I ++ +TG D++
Sbjct: 295 DAMTMYRAGEKALLSAAKISQLRQNEKLDEKKLKDIQYTYQNLPIKSLKDLDITGKDLLA 354
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
P GK V L +Q + ++ + L+
Sbjct: 355 LRNRPAGKWVSEELQRIEQAVVTGKLSNQKKYIEEWLK 392
>gi|289422289|ref|ZP_06424140.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Peptostreptococcus anaerobius 653-L]
gi|289157294|gb|EFD05908.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Peptostreptococcus anaerobius 653-L]
Length = 430
Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats.
Identities = 82/430 (19%), Positives = 168/430 (39%), Gaps = 32/430 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D IL + + ++ +VGG VRDS+M + +D DI T LP+ ++ +F +
Sbjct: 4 MIDKGAALILDKIEECGFEAFVVGGCVRDSIMARTPKDWDITTDALPEDIIAMFD----R 59
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
IPT I +GT+ ++ + +++TT R D + R V FTR+ D RRDFTINA+
Sbjct: 60 TIPTGIKHGTVTVLVGGQAYEVTTYRIDGDYLDSRRPESVEFTRNIVDDLSRRDFTINAM 119
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
++D GL D++N+ I+ +G+ R ED LRI+R RF A G + +S
Sbjct: 120 AYSPSRGLVDRFSGLEDIKNKIIRCVGNPDLRFKEDALRIMRAIRFSAQLGFQIEESTQK 179
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ + I + + N + + ++ + + ++ +
Sbjct: 180 YIEENSLRLHLISAERIHDELEKVIESDPNKVKNLNNLGGFVDKFFLGYRPSDENIGLST 239
Query: 248 QVIEAEQVFEWK--------IDSLLRFIVL----ISWQDKKSILSMAKKFSLPREIRYFL 295
++ ++F K ID+LL + + + + + ++
Sbjct: 240 KIDHLYEIFGDKFIEVNFGNIDNLLLQDIKRAYLFLDMEGQDLEKTMRALRYSKKDIDKS 299
Query: 296 ISFFNCNFNQKTLSIPEIK--------------KLFYLYGDKVMIAKLKIFLALHYNNLT 341
++ + + E ++ +GD + + + N
Sbjct: 300 LAIHGFLNDSSLEYLFEKDGFAHGERDLRIGLKRIMSRFGDLSLAKNAILAKIIQKNLKA 359
Query: 342 HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401
++ + + G +V+ + G +GN+L + I + +
Sbjct: 360 DVYFRVYNDIIESGECFSISQMKIDGRFIVENNLAKGPMIGNLLNEMLEHVIKNPSDNEK 419
Query: 402 EDLHHLLRKL 411
+ L +L+ +
Sbjct: 420 DRLIEILKNI 429
>gi|85707865|ref|ZP_01038931.1| tRNA nucleotidyltransferase [Erythrobacter sp. NAP1]
gi|85689399|gb|EAQ29402.1| tRNA nucleotidyltransferase [Erythrobacter sp. NAP1]
Length = 396
Score = 183 bits (463), Expect = 5e-44, Method: Composition-based stats.
Identities = 125/402 (31%), Positives = 195/402 (48%), Gaps = 26/402 (6%)
Query: 1 MV-SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59
M + W L + + L VGGAVRD+L+ ++V D+D ATT PD+V
Sbjct: 1 MTNPLQNADWPRRDGLTALTTALGAQ--HIRWVGGAVRDTLLGVAVHDVDCATTHTPDQV 58
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + + + +PT I +GT+ I + ++TTLR D+ TDGR A V F +W+ D+ R
Sbjct: 59 IDLCADAGIRTVPTGIEHGTVTAILKDGPVEVTTLRRDVATDGRRATVAFATEWREDAAR 118
Query: 120 RDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINALYA + +V DY GGL+DL R ++FIGDA RI ED+LRILR++RF A +G
Sbjct: 119 RDFTINALYAHPETLEVSDYFGGLDDLAKRRVRFIGDARQRIAEDHLRILRYYRFQARFG 178
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ S + K LS ER+ E+ KLL +P I M++ + + I +
Sbjct: 179 AELDPEAEDACSELSATL-KGLSRERVADELLKLLSLPDPGATIERMFDRAVLRVILPET 237
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
++QL ++IE E + D + R + + +A + L + R L+S
Sbjct: 238 ALRHVEQLRELIEREAEQGFAPDPI-RRLATLLPPSPDVAEGVAARLRLSKAQRAQLVSA 296
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + + L Y G+ I +L + + + + I W
Sbjct: 297 SE----RLGHDVSNPRVLAYELGNAFAIDRLLL----------------LGEDAAAIAGW 336
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400
+ P FPL G +V G+ G V IL ++ W++ F
Sbjct: 337 QAPTFPLKGGAIVARGVAAGPDVARILQLVEKRWVSEGFPSE 378
>gi|260437796|ref|ZP_05791612.1| poly A polymerase [Butyrivibrio crossotus DSM 2876]
gi|292809820|gb|EFF69025.1| poly A polymerase [Butyrivibrio crossotus DSM 2876]
Length = 404
Score = 183 bits (463), Expect = 5e-44, Method: Composition-based stats.
Identities = 94/402 (23%), Positives = 178/402 (44%), Gaps = 21/402 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
D+ I++ L + ++ VGG VRDS++ D DI T+ P V ++F + +
Sbjct: 7 EDVDYIITRLTEYGYEAYAVGGCVRDSIICRVPGDWDITTSAKPWEVKKLFR----RTVD 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + +++TT R D + R+ K FT + D RRDFTINA+ +
Sbjct: 63 TGIEHGTVTVMMGNEGYEVTTYRIDGEYEDSRHPKNVEFTSNLGEDLKRRDFTINAMAYN 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++D G D+ + I+ +G+ R ED LR+LR RF A G I + A
Sbjct: 123 YSQGIVDMFDGKGDIERKIIRCVGNPEERFTEDALRMLRAVRFSAQLGY-EIAEETADAV 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K + +S ERI +E+NK+L + +P + M + ++ +L+ L
Sbjct: 182 KKLAGTISKISKERIHTELNKILLSDHPDYLMKAM------ELGITEIVFSALNDLPDKE 235
Query: 251 EAEQVF-EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
A ++ + + R+ ++ KK +++ ++ L + + + T
Sbjct: 236 TAMKLLIRLPKELVYRYGAVLFELGKKRTVAVLRELKLDNNTIDNTGRLVDMHGMEITED 295
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFL-------ALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
P I+ G + L+ + + ++L +
Sbjct: 296 KPLIRHQASSCGAAMYEMVLRFEYEFYMAADDRNKAMALKKQEALFKEILENGDCLTLKE 355
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
+TG+D+++ GI PGK++GNIL + +N+ +++ L
Sbjct: 356 LAVTGNDLIEAGIHPGKEIGNILKSMLDDVLNTPEHNTKKYL 397
>gi|291484667|dbj|BAI85742.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. natto BEST195]
Length = 397
Score = 183 bits (463), Expect = 5e-44, Method: Composition-based stats.
Identities = 97/398 (24%), Positives = 162/398 (40%), Gaps = 16/398 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L +L + ++ VGGAVRDS M ++ D+DIAT PD+V R+F + +
Sbjct: 8 ALPVLRILIEAGHQAYFVGGAVRDSYMKRTIGDVDIATDAAPDQVERLFQ----RTVDVG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GTI ++ + +++TT R++ R ++V F + D RRD TINA+
Sbjct: 64 KEHGTIIVLWEDETYEVTTFRTESDYVDFRRPSEVQFISSLEEDLKRRDLTINAMAMTAD 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
GKV+DY GG D+ + I+ +G R ED LR+LR RF + G + + A K
Sbjct: 124 GKVLDYFGGKKDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLGF-TLSPETEEAIAK 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
K L +S ER E KLL+ + A+ + + L + L E
Sbjct: 183 EKSLLSHVSVERKTIEFEKLLQGRASRQALQTLIQTRL--YEELPGFYHKRENLISTSEF 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ L +++ K K + LP ++ I T
Sbjct: 241 PFFSLTSREELWAALLINLGIVLKDAPLFLKGWKLPGKVIKEAIHIA------DTFGQSL 294
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G+K +++ KI L + I ++ +TG D++
Sbjct: 295 DVMTMYRAGEKALLSAAKISQLRQNEKLDEKKLKDIQYAYQNLPIKSLKDLDITGKDLLA 354
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
P GK V L +Q + ++ + L+
Sbjct: 355 LRNRPAGKWVSEELQRIEQAVVTGKLSNQKKHIEEWLK 392
>gi|221640701|ref|YP_002526963.1| polynucleotide adenylyltransferase region [Rhodobacter sphaeroides
KD131]
gi|221161482|gb|ACM02462.1| Polynucleotide adenylyltransferase region [Rhodobacter sphaeroides
KD131]
Length = 380
Score = 183 bits (463), Expect = 6e-44, Method: Composition-based stats.
Identities = 119/403 (29%), Positives = 187/403 (46%), Gaps = 28/403 (6%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ W + ++L + ++ VGG VR++L+ +V DID+AT +P V + +
Sbjct: 3 ISGDWLVQPATQRLCAVLAEAGHRALFVGGCVRNALLGRAVSDIDLATDAVPAAVSALAA 62
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+KV+PT I +GT+ +I ++TT R D+ T GR+A V F+ D D+ RRDFT+
Sbjct: 63 AAGFKVVPTGIDHGTVTVIAGGVPHEVTTFRRDVETFGRHAVVAFSTDVAEDAARRDFTM 122
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--I 182
NALYA+ G VID +GGL DL R ++F+GD RI EDYLRILRFFRF A YG + +
Sbjct: 123 NALYAEASGAVIDPLGGLPDLIARRVRFVGDPIRRIEEDYLRILRFFRFHAIYGAPDEGL 182
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D++GL A +G+ LS ER+ +E+ KLL A +P ++ M G+ + + +
Sbjct: 183 DAEGLAACAARAEGVAQLSRERVGAEMRKLLAADDPAPSVASMECAGVLAVVLPGAEARA 242
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
L L + E D LLR + S+ R +
Sbjct: 243 LPVLVHLEE-----GRAPDWLLR------------LASLGGAEVADRLRLSRADAAALAR 285
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ L+ + Y G ++ + + AL +
Sbjct: 286 LREAALAGAPPAEQGYRLGLRLGAGAVLLRAALTETPPPAGWEAAV-------ERGATAR 338
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
FP+ D++ G +G L ++ WI S F+L + L
Sbjct: 339 FPVAAADLMPA--LAGPALGARLRALEERWIASDFRLDRGALL 379
>gi|154484258|ref|ZP_02026706.1| hypothetical protein EUBVEN_01970 [Eubacterium ventriosum ATCC
27560]
gi|149734735|gb|EDM50652.1| hypothetical protein EUBVEN_01970 [Eubacterium ventriosum ATCC
27560]
Length = 457
Score = 183 bits (463), Expect = 6e-44, Method: Composition-based stats.
Identities = 106/445 (23%), Positives = 194/445 (43%), Gaps = 51/445 (11%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ +L ++ VGG VRD++++ QD DI T+ LP++V +F+ + + T
Sbjct: 18 VKLIIDVLENNGYEAFAVGGCVRDTILDREPQDWDITTSALPEQVKELFN----RTLDTG 73
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAK-VVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +++TT R D + R+ + V FT + D RRDFTINA+ +++
Sbjct: 74 IQHGTVTVMIKHVGYEVTTYRIDGEYNDSRHPESVEFTSNLIEDLKRRDFTINAMAYNER 133
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D G+ND+ N+ I+ +G+ R ED LRILR RF A G +ID + A K
Sbjct: 134 EGLVDAFDGINDINNKIIRCVGEPEERFGEDALRILRAVRFSAQLGF-DIDEKTMEAIKK 192
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S+ERI +E+ KL+ +KNP I YN GI K I + + + +
Sbjct: 193 LAPTLENISAERIKTELEKLIISKNPCKLITA-YNAGITKVILPEFDAMMECEQNTPYHM 251
Query: 253 EQVFEWKI--------DSLLRFIVLISW----------------------QDKKSILSMA 282
V E I D L+R+ L + + +
Sbjct: 252 YNVGEHTIKVMENVSADKLMRWTALFHDVAKPLVKTTDANGRNHFKGHALEGSRLAPQIM 311
Query: 283 KKFSLPREIRYFLISFFNCNFNQ---KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
++ + + C+ ++ K + I++ + G + L++ A
Sbjct: 312 RRLKMDNKTIKTASRLIECHDDRPASKGFNPEAIRRSVHKIGKDIYHNYLELVYADFMGK 371
Query: 340 LTHQDTCFILQV----------LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
+ + + I +TG D++ G P G+K+G L
Sbjct: 372 SKYGKDEGYDAYVYVCKQYEYIMENNICTSTKELAITGKDLIALGCPLGEKIGRALDELL 431
Query: 390 QEWINSSFQLSQEDLHHLLRKLIAS 414
+ + + +++ L+ K+I S
Sbjct: 432 EIVLKEPEKNTKDKLYVEAEKIIKS 456
>gi|67458411|ref|YP_246035.1| Poly(A) polymerase [Rickettsia felis URRWXCal2]
gi|67003944|gb|AAY60870.1| Poly(A) polymerase [Rickettsia felis URRWXCal2]
Length = 385
Score = 183 bits (463), Expect = 6e-44, Method: Composition-based stats.
Identities = 129/401 (32%), Positives = 193/401 (48%), Gaps = 27/401 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
ILSLLN+ + ++GG VRD+L+ DIDIAT + PD V+ I SK + K
Sbjct: 10 IPSKGYKKILSLLNEKGH-ARLIGGCVRDALLEKDSYDIDIATNLTPDEVINILSKAKIK 68
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
IPT + +GTI I ++ F+ITTLR D+ +GR+AKV+FT D+ D+ RRDFTINAL
Sbjct: 69 TIPTGLKFGTITAILNEEKFEITTLRKDIECNGRHAKVIFTNDFAEDAARRDFTINALSY 128
Query: 130 DQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
++ DY G DL+ + FIG+A RI EDYLRILRFFRF ++Y + ++
Sbjct: 129 CPFKNEIYDYFEGFKDLQQEKVVFIGEALDRIKEDYLRILRFFRFSSYYANQ-LNDGSFK 187
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQLS 247
A K GLK LS ERI SE++K++ +K + M + GI + IF + EI + S
Sbjct: 188 ACKALKDGLKTLSRERIKSEMDKIIVSKKAAQILEAMSHIGILELIFSIQNYEIKFFEQS 247
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+ +E + + +L + K S + S+ + S F +K
Sbjct: 248 KELELATNYALLLYNLKNINSKLLLDWKFSRQEAMQILSILNFLNDSKDSMKKIWFEKKN 307
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
+ A L H + ++ P F + G
Sbjct: 308 YKEY-------------------LLAACKIGKLNHSQVKEFIYKYDVLLR---PKFQVNG 345
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+D++ I K++G L + K WI F+ S+ +L L
Sbjct: 346 NDLLNMNIEK-KEIGTKLEYLKNFWIEQDFKPSKLELLEKL 385
>gi|290894259|ref|ZP_06557227.1| polyA polymerase [Listeria monocytogenes FSL J2-071]
gi|290556198|gb|EFD89744.1| polyA polymerase [Listeria monocytogenes FSL J2-071]
Length = 393
Score = 183 bits (463), Expect = 6e-44, Method: Composition-based stats.
Identities = 82/397 (20%), Positives = 155/397 (39%), Gaps = 19/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQ----TSYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ + +Y+++TT R++ R ++V F R + D RRDFT+NA+ D+
Sbjct: 64 IAHGTVTVRENNEYYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEH 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D G ++N+ IK +G A R ED LR++R RF + + +
Sbjct: 124 FVLHDPFSGQEAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQLDFELDKETEKALESQ 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ I + + + L ++ +L + +
Sbjct: 184 IELLQHTSVERITVEWIKMMKGKAAKRAIELLLKVKMETYLPGLKDEKPALSEFASWDWE 243
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ E I L V ++ + K + LP + + + K + +
Sbjct: 244 KRTTEESIWLGLVVAVK-----PNNVNAFLKAWKLPNKTIQLVNKAYQDALKMKETWLTD 298
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G V ++ + N H+ + Q + K +TG D++K
Sbjct: 299 ---ELYHAGKAVFSLVNELNVIRGQENNQHK----LSQAYEALPIHSKKDLAITGADLLK 351
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G G V L + +++ + + L
Sbjct: 352 WSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWL 388
>gi|206974941|ref|ZP_03235856.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus H3081.97]
gi|206746960|gb|EDZ58352.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacillus cereus H3081.97]
Length = 397
Score = 183 bits (463), Expect = 6e-44, Method: Composition-based stats.
Identities = 87/401 (21%), Positives = 178/401 (44%), Gaps = 15/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++GK++D G ++ R I +G+A R ED LR++R RF + G ++++ A
Sbjct: 121 EEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + A+ + +F L ++S ++L +
Sbjct: 180 ETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLF--SHLPYLQMSEEKLLKAT 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + F + ++ ++ KFS + + +K
Sbjct: 238 QYKWDSFEADIEAWAFFLYCIGEEHPAVFLRQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + H + + + + +TG+D+
Sbjct: 298 V----LLYKTGIHIAEMAERVYEAM-IESYDHTAVNRVQTLFQALPIKNRQEMNVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG V ++ ++ + + +E + L++
Sbjct: 353 LNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393
>gi|222095266|ref|YP_002529326.1| tRNA cca-pyrophosphorylase [Bacillus cereus Q1]
gi|254813687|sp|B9IVQ9|CCA_BACCQ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|221239324|gb|ACM12034.1| polyA polymerase [Bacillus cereus Q1]
Length = 397
Score = 182 bits (462), Expect = 7e-44, Method: Composition-based stats.
Identities = 87/401 (21%), Positives = 178/401 (44%), Gaps = 15/401 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P
Sbjct: 5 KKASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VP 60
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ +GT+ ++ + +++TT R+ + R + V F R + D RRDFT+NA+
Sbjct: 61 VGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMT 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++GK++D G ++ R I +G+A R ED LR++R RF + G ++++ A
Sbjct: 121 EEGKMVDLFAGQEAIQKREIMTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKTKQAI 179
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+ ++ ERI E KLL + A+ + +F L ++S ++L +
Sbjct: 180 ETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLF--SHLPYLQMSEEKLLKAT 237
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + F + ++ ++ KFS + + +K
Sbjct: 238 QYKWDSFEADIEAWAFFLYCIGEEHPAVFLRQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L Y G + +++ A+ + H + + + + +TG+D+
Sbjct: 298 V----LLYKTGIHIAEMAERVYEAM-IESYDHTAVNRVQTLFQALPIKNRQEMNVTGNDL 352
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + PG V ++ ++ + + +E + L++
Sbjct: 353 LNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393
>gi|226324134|ref|ZP_03799652.1| hypothetical protein COPCOM_01912 [Coprococcus comes ATCC 27758]
gi|225207683|gb|EEG90037.1| hypothetical protein COPCOM_01912 [Coprococcus comes ATCC 27758]
Length = 450
Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats.
Identities = 103/426 (24%), Positives = 172/426 (40%), Gaps = 48/426 (11%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I++ L K ++ VGG VRDS + D DI T+ P+ +F+ + T
Sbjct: 11 VNRIITTLQKHGFEAYAVGGCVRDSFLGRVPGDWDITTSAAPEETKSLFA----RTFDTG 66
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
I +GTI ++ + F++TT R D + R+ FTR D LRRDFTINA+ ++Q
Sbjct: 67 IEHGTITVLLNGEGFEVTTYRIDGKYEDNRHPSKVQFTRSLSEDLLRRDFTINAMAYNEQ 126
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D G+ DL+ I+ +G+A R ED LRILR RF A G I+ + A K
Sbjct: 127 DGLVDLFHGMEDLKKGVIRCVGNAEARFSEDALRILRAIRFSAQLGF-EIEKETRQAIRK 185
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L +S+ERI +E+ KLL + +P I Y GI K I + + +
Sbjct: 186 LAPNLSYISAERIQTELVKLLISDHPEK-IQDAYELGITKVILPEFDAMMETTQETLHHC 244
Query: 253 EQVFEWKI--------DSLLRFIVLISWQDKKS----------------------ILSMA 282
V E I D +LR +L K + S+
Sbjct: 245 YNVGEHTIHALMNIPADKVLRLTMLFHDTGKPARKTVDPDGTAHFKGHAYVSEELTKSIM 304
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
+ + + + ++ ++ +++ ++ +K+ +A +
Sbjct: 305 HRLKFDNDTLRKVSKLVLYHDDRMPATMKHVRRAMNRISAELFPYYMKVRMADTLAQSDY 364
Query: 343 QDTCFIL----------QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
Q + ++L + G D++ GI G K+G L QE
Sbjct: 365 QRDKKLENLAGIEKCYQEILEKKQCVSLKELKVNGQDLIAAGIEKGPKIGQTLQTLLQEV 424
Query: 393 INSSFQ 398
I +
Sbjct: 425 IEEPEK 430
>gi|332799849|ref|YP_004461348.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Tepidanaerobacter sp. Re1]
gi|332697584|gb|AEE92041.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Tepidanaerobacter sp. Re1]
Length = 444
Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats.
Identities = 92/443 (20%), Positives = 174/443 (39%), Gaps = 47/443 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S + I + L ++ +VGG +RD +MN D DIAT+ P+ + +F + P
Sbjct: 8 SAIKKICNKLRASGFEAYVVGGTIRDLIMNRQNSDFDIATSAFPNEIKSVFPNAK----P 63
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
++GT+ +I +IT R+D GR VF D RRDFTIN++ D
Sbjct: 64 YG-NFGTMLVIADGFKVEITPFRND--APGRKPDYVFGGSIYTDLARRDFTINSIAYDPI 120
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ + + + RI ED LR +R RF A G +ID+ L A
Sbjct: 121 DDELIDPFDGIKDIKKGVIKCTGSTRRIWEDPLRAMRAARFQAQLGF-SIDASTLYALKS 179
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--------QEISLD 244
K L +S ERI E+ ++L A + +V + + I ++ +D
Sbjct: 180 HAKELTGVSQERIRDELTRILTADYNFDGLVTLVITDLMNYIIPELMAGMGVMHSNKPVD 239
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVL-------------------ISWQDKKSILSMAKKF 285
L + A +V + L ++ + + + ++
Sbjct: 240 VLEHNLIACKVIRNTLPLRLAALLHDISKPETAVNCEEGLRFPKHQIESAAAAREILQRL 299
Query: 286 SLPREIRYFLISFFNCNFNQ--KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
+ +I + + S+ + ++L G + + + + +A + +
Sbjct: 300 RFDNKTIKKVILLIENHMFFYTENSSLADARRLISKVGWENIYNLIDLRVADKIASGFDR 359
Query: 344 -DTCFILQVLSDIIHWK--------KPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWI 393
+ + +++ DI K +TG+D++ + GI PG +VG IL + I
Sbjct: 360 VYSPGLKKLIMDIEIIKNEQCGDYQIKDLAVTGEDIMSELGISPGPQVGQILNILLDKVI 419
Query: 394 NSSFQLSQEDLHHLLRKLIASSQ 416
+ ++ L + + +A+ Q
Sbjct: 420 ENPSLNNKAALLEIAKTTLAAEQ 442
>gi|290959021|ref|YP_003490203.1| RNA nucleotidyltransferase [Streptomyces scabiei 87.22]
gi|260648547|emb|CBG71658.1| putative RNA nucleotidyltransferase [Streptomyces scabiei 87.22]
Length = 482
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 79/453 (17%), Positives = 160/453 (35%), Gaps = 53/453 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +VGG+VRD+L+ D+D T P+ V++I +
Sbjct: 26 SPVADDLARRFQQAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADALW 85
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+
Sbjct: 86 EVGIAFGTVGAQKDGYQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVA 145
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + ID GGL DL R ++ G +D LR++R RF A G +
Sbjct: 146 LPEKEFIDPHGGLEDLSARVLRTPGTPEDSFSDDPLRMMRAARFAAQLGFEVAPEVVSAM 205
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ---- 245
+ A + +I+S+ER+ E+NKL+ + +P + + G+ + + ++ + L++
Sbjct: 206 TAMAGRL-EIVSTERVRDELNKLILSAHPREGLSLLVETGLAEHVLPELPALRLERDEHH 264
Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-------------------- 276
L + +A + + D LR L+ K
Sbjct: 265 RHKDVYDHTLIVLEQAIALEDAGPDLTLRLAALLHDIGKPRTRRFEQDGRVSFHHHEVVG 324
Query: 277 --SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
E+ + + + E Y+ ++ +L
Sbjct: 325 AKMTKKRMTALKYSNELVRDVSRLVELHLRFHGYGMGEWTDSAVRRYVRDAGPLLDRLHK 384
Query: 332 FLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + + L G+ +++ G+ PG
Sbjct: 385 LTRSDCTTRNKRKANALSRAYDGLEDRIAQLQEQEELDAIRPDLDGNQIMEILGVGPGPA 444
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+G + + + E + L++ A
Sbjct: 445 IGQAYKFLLELRLENGPMPQDEAVTA-LKEWWA 476
>gi|297622074|ref|YP_003710211.1| Poly(A) polymerase [Waddlia chondrophila WSU 86-1044]
gi|297377375|gb|ADI39205.1| Poly(A) polymerase [Waddlia chondrophila WSU 86-1044]
Length = 403
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 87/384 (22%), Positives = 165/384 (42%), Gaps = 10/384 (2%)
Query: 35 AVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTL 94
VRD L++ DIDIAT P++++ +F K I IS+G + ++ +++ T
Sbjct: 28 WVRDFLLDHPSDDIDIATDAKPEKIVELFQ----KTIEVGISFGVVVVLMDGHQYEVATF 83
Query: 95 RSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKF 152
R D DGR + + D+ RRDFTIN ++ D + VID+V G DL I+
Sbjct: 84 REDLGYEDGRRPTQCAYTNAEGDAKRRDFTINGMFYDPLEKNVIDFVDGRKDLEKGVIRA 143
Query: 153 IGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKL 212
IGD + R ED LR++R RF +G A ++ ER+W E+ K+
Sbjct: 144 IGDPYERFKEDRLRMIRAIRFTYRFGYALDPDTEQAIKDHAHCLFPAVAMERVWHELQKM 203
Query: 213 LEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW 272
+ A++ M+ G+ E+F ++++ +L + +EA F + ++L+ + L
Sbjct: 204 ARYPSFGEALLKMHAVGLLAEVFPPLKKVPEIELLKRVEAINRFPLECPAVLQVMELFPN 263
Query: 273 QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
+ ++ + + +T + LY L++
Sbjct: 264 SPLEEQVAFCYYLKVSNKEI----KLVEYTHQVRTQVSDQDADWVPLYAHPQAETVLQVV 319
Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
A + ++ I ++ +++ GI PG+++G +L ++
Sbjct: 320 CARKNGGQFQVHRERMDRLRVHINRIVNQSPVVSASMLLEEGIVPGRQMGELLREAERLA 379
Query: 393 INSSFQLSQEDLHHLLRKLIASSQ 416
I+ L +E L L ++ + S +
Sbjct: 380 ISHDLHLPEEVLLLLKKQTVWSKE 403
>gi|299143658|ref|ZP_07036738.1| polyA polymerase family protein [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518143|gb|EFI41882.1| polyA polymerase family protein [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 440
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 104/434 (23%), Positives = 183/434 (42%), Gaps = 42/434 (9%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+++ IL++LN IVGG++RD L++ D DIAT P + IF Y
Sbjct: 4 EILEILNILNMRGHLGYIVGGSLRDMLLDRIPFDFDIATDAKPYEIEEIFED--YLFYSI 61
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYADQ 131
YGTI I + ++TT R + I + FT + + D RRDFTINA+ D
Sbjct: 62 GKKYGTITIKYKDYIVELTTFRKEGIYENHRYPTEVFFTENIEEDLKRRDFTINAMAMDG 121
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID G++D+++R I+ +G+A RI ED LRILR RF +D D A I
Sbjct: 122 NGNIIDLYSGISDIKSRVIRTVGNADDRICEDALRILRAIRFAGTLDF-KLDCDLKDAII 180
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
K + L +S ERI SE NK+L ++ P ++ M + + I+ +
Sbjct: 181 KNRSLLNNISKERIASEFNKILLSEMPSKSLKLMADTKVLDIIYPKLYNTVGYNQKTPYH 240
Query: 252 AEQVFEW--------KIDSLLRFIVLISW----------------------QDKKSILSM 281
+ +FE + LR L K +
Sbjct: 241 NKTLFEHLLCVVDNVPKNFELRLAALFHDIAKPSTLSVDKNGIGHFYGHAELGAKMAEEI 300
Query: 282 AKKFSLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
++ + + + ++ +++ G + ++ ++ +A + +
Sbjct: 301 LRENRYSNSTIKKVSTLILYHMKVHDNMTDKALRRQIRKVGAENILELYELMIADRFCTM 360
Query: 341 THQDTCFILQVLSDIIHW------KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
T++DT F+L + I K+ + G D++ G GK +G IL + + ++
Sbjct: 361 TNRDTKFLLDRKNRITELLKESTSKEKFLAVNGRDIMTLGFKEGKIIGEILEYITEVVLD 420
Query: 395 SSFQLSQEDLHHLL 408
++E+L ++
Sbjct: 421 DPSLNNREELEKII 434
>gi|282863336|ref|ZP_06272395.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Streptomyces sp. ACTE]
gi|282561671|gb|EFB67214.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Streptomyces sp. ACTE]
Length = 505
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 84/451 (18%), Positives = 165/451 (36%), Gaps = 53/451 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + + +VGG+VRD+L+ D+D T P+ V++I V
Sbjct: 52 SPVADDLARRFREAGFRLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVW 111
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I++GT+ +ITT RS+ R +V + + D +RRDFT+NA+
Sbjct: 112 EVGIAFGTVGSQKDGYQIEITTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVA 171
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + +D GGL+DL R ++ G +D LR+LR RF A + D L A
Sbjct: 172 LPEKEFVDPHGGLDDLAARVLRTPGTPEESFSDDPLRMLRAARFAAQLDF-EVAPDVLTA 230
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ---- 245
++I+S+ER+ E+NKLL + +P + + G+ + ++ + L++
Sbjct: 231 MTDMAGRIEIVSAERVREELNKLLLSGHPRKGLGLLVETGLADRVLPELPALRLERDEHH 290
Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281
L+ + +A + E D +LR L+ K
Sbjct: 291 RHKDVYEHSLTVLEQAIDLEEEGPDLVLRLAALLHDIGKPKTRRFEKDGRVSFHHHEVVG 350
Query: 282 -------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
+ ++ + + E Y+ ++ +L
Sbjct: 351 AKLTRKRLTELKYSNDMVKDVSKLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLDRLHK 410
Query: 332 FLALHYNNLTHQDTCFILQ----------VLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + L D L G++++K G+ PG
Sbjct: 411 LTRSDCTTRNKRKANALSRTYDGLEERIAQLKDQEELDAIRPDLDGNEIMKILGVGPGPV 470
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+G + + + + ++ L++
Sbjct: 471 IGKAYAFLLELRLENG-PMERDAAIAALKEW 500
>gi|72163501|ref|YP_291158.1| metal-dependent phosphohydrolase [Thermobifida fusca YX]
gi|71917233|gb|AAZ57135.1| metal-dependent phosphohydrolase [Thermobifida fusca YX]
Length = 552
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 98/452 (21%), Positives = 168/452 (37%), Gaps = 55/452 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + + + IVGG VRD+L+ V DID+ T +P+RV+ + V
Sbjct: 88 DPVVTELGERFAAAGHELAIVGGPVRDALLGRPVHDIDLTTDAVPERVLELVDGWADAVW 147
Query: 72 PTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ + + +ITT R R +V + D +RRDFT+NA+
Sbjct: 148 TIGIEFGTVGLRKNGRQVEITTYRSESYQVKSRKPEVSYGTSLYEDLVRRDFTVNAMAVR 207
Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
G+ +D GGL DL +RT++ G +D LRI+R RF A G +
Sbjct: 208 VPGGEFVDPFGGLRDLADRTLRTPGKPEDSFNDDPLRIMRGIRFAAQLGFSVDEKVAAAM 267
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------- 238
+ A++ I+S+ERI E+ KL+ + NP + M + G+ + ++
Sbjct: 268 TAMAERLR-IVSAERIRDELTKLILSPNPRLGVSLMTDLGVANYVLPEIPKLKLTVDEHH 326
Query: 239 -----QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------ 281
E SL L Q ++ E+ + D +LR L+ K +
Sbjct: 327 RHKDVYEHSLTVLDQAVDLERARGMEPDLVLRLAALLHDIGKPKTRAFQPGGKVTFHHHE 386
Query: 282 ----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAK 328
P+++ + + + E Y ++++
Sbjct: 387 VVGASMSKNRLTALRFPKDVVNDVSKLVSLHLRFYGYGKGEWTDSAVRRYARDAGHLLSR 446
Query: 329 LKIFLALHYNN----------LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPP 377
L I + D ++ L+ K L G ++ + GI P
Sbjct: 447 LHILTRADCTTRNRRKAAALARAYDDIERRIERLAKEEELSKIRPDLDGHEIQEVLGIRP 506
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G VG + + + +E LLR
Sbjct: 507 GPLVGQAWRYLLELRLEHGPLGKEEATKALLR 538
>gi|307244320|ref|ZP_07526434.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Peptostreptococcus stomatis DSM 17678]
gi|306492286|gb|EFM64325.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Peptostreptococcus stomatis DSM 17678]
Length = 420
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 94/407 (23%), Positives = 181/407 (44%), Gaps = 15/407 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ + ++ +VGG VRDS+M D DI T LPD ++ IF + IPT
Sbjct: 16 ASQVIDAIQASGYEAFVVGGCVRDSVMGKIPHDWDITTNALPDDIVNIFP----RSIPTG 71
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + F++TT R D + R V ++++ + D RRDFTINA+ + Q
Sbjct: 72 IQHGTVTVLIDDEAFEVTTYRLDGDYLDMRRPRSVSYSQNLEDDLSRRDFTINAMAYNDQ 131
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D GGL+D+ + ++ +G+ R ED LRILR RF A +I+ + + + I+
Sbjct: 132 VGLVDKFGGLDDIEKKLVRCVGNPDKRFNEDALRILRALRFSAKLFF-DIEGETMDSIIR 190
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
++ +S ERI +E ++ A ++++ + + E L + + +
Sbjct: 191 NSVNIEKVSMERINTEFEGIIRANTNKLSLINDLDIRSYLFGDFCFDEEDLTRAMILEDI 250
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ E+ + I D K++L K E F+ + + + L+
Sbjct: 251 DSHEEYLQAAKRAMIFSHYEGDLKALLKFFKYSKKDMEKTLFIWNALRDHMYEDLLNENA 310
Query: 313 IKKLFYLYGDKVMIA----KLKIFLALHYNNLTHQDTCFILQVLSDI----IHWKKPLFP 364
+ L ++ L + + + I + +DI +
Sbjct: 311 TRDDLRLTIKYILRDAKDNILAKYAIYAKIIEKYANIGLIFNLFNDIIETGECFSVSHLQ 370
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
++G D++ G+ GK+VG +L + I+ +E L ++RK+
Sbjct: 371 ISGRDIIDEGLARGKEVGILLEALLCQVISQPQLNEKERLLEMVRKI 417
>gi|156552292|ref|XP_001600496.1| PREDICTED: similar to ENSANGP00000010598 [Nasonia vitripennis]
Length = 575
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 113/410 (27%), Positives = 191/410 (46%), Gaps = 16/410 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L + + + + + GGAVRD LM +D+D ATT P + +F+K +
Sbjct: 18 IFTPELNTLSDIFKRHNYELRVAGGAVRDILMGKHPKDLDFATTATPVEMKEMFTKEEVR 77
Query: 70 VIPT-SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI K+ F++TTLR D++TDGR+A VVFT DW D+ RRD TIN++
Sbjct: 78 MINCNGEKHGTITSRINDKENFEVTTLRVDVVTDGRHADVVFTTDWLLDASRRDLTINSM 137
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSD 185
+ D GKV DY G +DL R + F+G+ RI ED+LRI R+FRF+ N D
Sbjct: 138 FLDLDGKVYDYFYGYDDLMKRRVAFVGEPAQRICEDFLRIFRYFRFYGRIADVPDNHDEK 197
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ A + KGL+I+S ERIWSE +K+L + + G K + L + ++L+
Sbjct: 198 TITAIKENVKGLEIISGERIWSEWSKILAGNFHRELTLKLIECGCSKYMGLP-ENLNLEH 256
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+++ Q K+ + L+ ++ +L + + P R + +
Sbjct: 257 FNKICLNAQKNNVKLRPISLIAALLHTEE--EVLQLFMRLRFPNFDRNLALFIVQHREEK 314
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ + + L + + L + L +L + W FP+
Sbjct: 315 LCENPLKPYQRVVLKTIGKVSDVREFVSELLRYKGS-------LDLLEEFEKWDS-RFPI 366
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
G V Y + K +G ++ K W++S+ ++ E L + + A +
Sbjct: 367 NGGMVKPY-VENPKVIGEVINRLKDIWLDSNCEMPVEKLQKHIPDIAAEA 415
>gi|296333017|ref|ZP_06875474.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305674879|ref|YP_003866551.1| tRNA nucleotidyltransferase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296149868|gb|EFG90760.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305413123|gb|ADM38242.1| tRNA nucleotidyltransferase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 397
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 95/398 (23%), Positives = 157/398 (39%), Gaps = 16/398 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L + ++ VGGAVRDS M ++ D+DIAT PD+V R+F + +
Sbjct: 8 ALPVLRTLIEAGHQAYFVGGAVRDSYMKRTIGDVDIATDAAPDQVERLFQ----RTVDVG 63
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GTI ++ + +++TT R S+ R + V F + D RRD TINA+
Sbjct: 64 KEHGTIIVLWEDETYEVTTFRAESEYEDYRRPSDVQFITSLEEDLKRRDLTINAMAMTAD 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
GKV+DY GG D+ + I+ +G R ED LR+LR RF + G + + A K
Sbjct: 124 GKVLDYFGGKKDIDQKLIRTVGKPEDRFQEDALRMLRAVRFMSQLGF-TLSLETKEAITK 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
K L +S ER E K+L+ + A+ + G+ L + L E
Sbjct: 183 EKSLLSHVSVERKTIEFEKMLQGRASRQALQTLIQTGL--YEELPGFYHKRENLLAASEF 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ L +++ D K + + T
Sbjct: 241 PFYSLTSREELWAALLIDLEIDLKDAPLFL------KAWKLPGKVMKEAIHISHTFGQSL 294
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G+K +++ KI L + I ++ +TG D++
Sbjct: 295 DTMSMYKAGEKSLLSAAKISQLRQNEKLDDEKLKDIQNTYQNLPIKSLRDLDITGKDLLA 354
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
P GK V L +Q + ++ + L+
Sbjct: 355 LRNRPAGKWVSEELQRIEQAVVTGKLSNQKKHIEEWLK 392
>gi|116873340|ref|YP_850121.1| tRNA CCA-pyrophosphorylase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123461247|sp|A0AK10|CCA_LISW6 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|116742218|emb|CAK21342.1| polyA polymerase [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 393
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 83/397 (20%), Positives = 154/397 (38%), Gaps = 19/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+ ++ D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLCRTISDVDIATSAFPEEVKEIFPS----TYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ + K+ +++TT R++ R ++V F R K D RRDFT+NA+ D+
Sbjct: 64 IAHGTVTVRENKECYEVTTFRTEGTYEDFRRPSEVTFIRSLKEDLQRRDFTMNAIAMDEH 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++ D G ++N+ IK +G A R ED LR++R RF +
Sbjct: 124 FELHDPFFGQLAIQNKEIKAVGKASERFQEDALRMMRAVRFLSQLDFHLDKETENALQKN 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + V + L ++ +L +
Sbjct: 184 IALLQHTSVERITVEWVKLMKGPAVKRAINVLLKVEMETYLPGLKGEKSALIPFASWEWD 243
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ E I L V K ++ S K + LP + + + N K
Sbjct: 244 KRTTENVIWLGLAVAVK-----KANVTSFLKAWKLPNKTIQLVNQAYQYALNGK---EYW 295
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
K+ Y G +V +I + N + Q+ + K +TG D+++
Sbjct: 296 QKEELYYAGKEVFSLVNEINVIRGQEN----KQNELDQLYETLPIHSKKDLAITGGDLLE 351
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G + + L + ++ + ++ + L
Sbjct: 352 WADKSAGPWIKDTLDKVESAVLSQAINNDKKHIKRWL 388
>gi|16079302|ref|NP_390126.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. subtilis str.
168]
gi|221310161|ref|ZP_03592008.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. subtilis str.
168]
gi|221314483|ref|ZP_03596288.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221319405|ref|ZP_03600699.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323681|ref|ZP_03604975.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. subtilis str.
SMY]
gi|1709578|sp|P42977|CCA_BACSU RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|1146238|gb|AAB38446.1| poly(A) polymerase [Bacillus subtilis subsp. subtilis str. 168]
gi|2634663|emb|CAB14161.1| tRNA nucleotidyltransferase [Bacillus subtilis subsp. subtilis str.
168]
Length = 397
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 97/398 (24%), Positives = 161/398 (40%), Gaps = 16/398 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L +L + ++ VGGAVRDS M ++ D+DIAT PD+V R+F + +
Sbjct: 8 ALPVLRILIEAGHQAYFVGGAVRDSYMKRTIGDVDIATDAAPDQVERLFQ----RTVDVG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GTI ++ + +++TT R++ R ++V F + D RRD TINA+
Sbjct: 64 KEHGTIIVLWEDETYEVTTFRTESDYVDFRRPSEVQFISSLEEDLKRRDLTINAMAMTAD 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
GKV+DY GG D+ + I+ +G R ED LR+LR RF + G + + A K
Sbjct: 124 GKVLDYFGGKKDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLGF-TLSPETEEAIAK 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
K L +S ER E KLL+ + A+ + + L + L E
Sbjct: 183 EKSLLSHVSVERKTIEFEKLLQGRASRQALQTLIQTRL--YEELPGFYHKRENLISTSEF 240
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ L +++ K K + LP ++ I T
Sbjct: 241 PFFSLTSREELWAALLINLGIVLKDAPLFLKAWKLPGKVIKEAIHIA------DTFGQSL 294
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G K +++ KI L + I ++ +TG D++
Sbjct: 295 DAMTMYRAGKKALLSAAKISQLRQNEKLDEKKLKDIQYAYQNLPIKSLKDLDITGKDLLA 354
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
P GK V L +Q + ++ + L+
Sbjct: 355 LRNRPAGKWVSEELQWIEQAVVTGKLSNQKKHIEEWLK 392
>gi|217963943|ref|YP_002349621.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Listeria
monocytogenes HCC23]
gi|254813696|sp|B8DC21|CCA_LISMH RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|217333213|gb|ACK39007.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl- transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Listeria
monocytogenes HCC23]
gi|307571487|emb|CAR84666.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Listeria
monocytogenes L99]
Length = 393
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 81/397 (20%), Positives = 155/397 (39%), Gaps = 19/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQ----TSYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ + +++++TT R++ R ++V F R + D RRDFT+NA+ D+
Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEH 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D G ++N+ IK +G A R ED LR++R RF + + +
Sbjct: 124 FALHDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQLDFELDKETEKALESQ 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ I + + + L ++ +L + +
Sbjct: 184 IELLQHTSVERMTVEWIKMMKGKAAKRAIELLLKVKMETYLPGLKDEKPALSEFASWDWE 243
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ E I L V ++ + K + LP + + + K + +
Sbjct: 244 KRTTEESIWLGLVVAVK-----PNNVNAFLKAWKLPNKTIQLVNKAYQDALKMKETWLTD 298
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G V ++ + N H+ + Q + K +TG D++K
Sbjct: 299 ---ELYHAGKAVFSLVNELNVIRGQENNQHK----LSQAYEALPIHSKKDLAITGADLLK 351
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G G V L + +++ + + L
Sbjct: 352 WSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWL 388
>gi|218529716|ref|YP_002420532.1| polynucleotide adenylyltransferase region [Methylobacterium
chloromethanicum CM4]
gi|218522019|gb|ACK82604.1| Polynucleotide adenylyltransferase region [Methylobacterium
chloromethanicum CM4]
Length = 428
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 121/399 (30%), Positives = 196/399 (49%), Gaps = 7/399 (1%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + L+ L+ +++ +VGG VRD+L+ V DID+ATT+ P+ VM K
Sbjct: 27 LARAGVQACLAALDAPGEETRLVGGCVRDALLGTIVADIDLATTLRPEAVMACARTAGLK 86
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ T I +GT+ ++ + +++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL
Sbjct: 87 AVGTGIEHGTVTLVVSGEPYEVTTLREDVETDGRHAVVRFGRDFVRDAERRDFTINALSL 146
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D +G++ D GG+ DL ++FIGDA R+ ED LR+LRFFRF A YG D++GL A
Sbjct: 147 DAEGRLHDTTGGVADLAAGRVRFIGDAATRLREDALRLLRFFRFHARYGSGAPDAEGLAA 206
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
SI A+ L LS ER+ +E KLL A ++A+ + G+ I V E+ +L++
Sbjct: 207 SIAARDSLDRLSRERVRAEFLKLLLAPRAVDAVAILSETGLLPRILGGVGELG--RLARC 264
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
AE + + + + + +D + + + ++ +
Sbjct: 265 AAAEPRLDAT--ARFAALAVRTLEDTDRLQASLRLSRAEHARLTGYAIALAALHDRPVIE 322
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ L +G + L I L D +L + + + P+TG D
Sbjct: 323 ADAVPALVATHGAGPLRELL-IALDGEPRPRATPDARAVLDRME--AAGTRLVLPVTGAD 379
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+V G+ PG+ VG L + W+ S + L+
Sbjct: 380 LVARGVAPGRAVGAGLRAARDLWLASGCPDDAQARERLI 418
>gi|255261768|ref|ZP_05341110.1| poly A polymerase family protein [Thalassiobium sp. R2A62]
gi|255104103|gb|EET46777.1| poly A polymerase family protein [Thalassiobium sp. R2A62]
Length = 383
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 103/406 (25%), Positives = 181/406 (44%), Gaps = 26/406 (6%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
++ + +W + + + + VGG VR+++++L + D+D+++ P++ +
Sbjct: 1 MTQIDGQWMKSPAVQRVFEIYADAGFELFFVGGCVRNAVLDLPIHDVDLSSNATPEQGTK 60
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
I S KVI T +GTI ++ +IT+ R D+ T GR A V +++ D+ RRD
Sbjct: 61 IASAAGLKVISTGYDHGTITVVSDGTPLEITSFRRDVETYGRRAVVAYSQSIDDDARRRD 120
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FT+NALYA G+V+D +GGL DL R ++FI +A RI ED+LR LRFFRF A Y ++
Sbjct: 121 FTMNALYARATGEVVDPLGGLLDLYARRLRFIENADQRIQEDFLRSLRFFRFHALYADQT 180
Query: 182 IDSDGLVASIKAKKGL--KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ + + + + L ERI +E+ KLL A +P AI M G+ +
Sbjct: 181 LGFEPEAIAAISGNLDGLETLPKERIGAEMVKLLAATDPAPAIATMGQCGVLMRVLPGAA 240
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+L L V E+ + +++ R V+ + + + ++
Sbjct: 241 AAALAVLVHV---EEAYSVAPNAIRRLCVVGGEDPVRDLRLSKAQAKELNVLK------- 290
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ S+ +L Y G I L + A L ++ + I
Sbjct: 291 -----EGLGSLMSAAELGYRLGSTAAIDVLLLRAATAGMMLDPRE-------IDAAIRGD 338
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+ P+ D+ G +G L + WI S ++ +L
Sbjct: 339 AQVCPIAASDLSDSF--QGWALGEELKRLEAVWIASDLSATKSELL 382
>gi|172041689|ref|YP_001801403.1| tRNA nucleotidyltransferase [Corynebacterium urealyticum DSM 7109]
gi|171852993|emb|CAQ05969.1| tRNA nucleotidyltransferase [Corynebacterium urealyticum DSM 7109]
Length = 521
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 87/466 (18%), Positives = 164/466 (35%), Gaps = 62/466 (13%)
Query: 3 SIVQHKW----FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58
+++ W +D+ L + + + +VGG+VRD+++ D+D T PD
Sbjct: 48 AMLGAAWQSLRRNDATLRRLAKAFEEAGHELYLVGGSVRDAMLARLSHDLDFTTDARPDA 107
Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADS 117
VM I V T I +GT+ + +ITT R+D R +V F + D
Sbjct: 108 VMGILEPMAETVWDTGIEFGTVSALVGGLEVEITTFRADQYDGQSRNPEVTFGDTLEGDL 167
Query: 118 LRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
+RRDF NA+ D + + D +GGL D+ + +D LR+LR RF
Sbjct: 168 VRRDFRANAMALKLSADGEHEFCDPLGGLADVAAGVLDTPDSPEVSFRDDPLRMLRACRF 227
Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
+ G + A + ++ ++ ER+ E+NKLL P + M G+
Sbjct: 228 VSQLGF-AVAPRVAEAMVAMADQIQRITVERVAVELNKLLLGTAPWEGLDLMVEAGLADY 286
Query: 234 IFLDVQEI----------------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+ ++ + SL L + EQ + + D LR+ L+ K
Sbjct: 287 VLPELPRLRMTQDEHKQHKDVYWHSLTVLRNALVQEQNYGVEPDLELRWAALLHDCGKPD 346
Query: 278 ----------------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ +K +++ + +
Sbjct: 347 TRAFTESGQVTFHQHEVVGAKLVRRRLRKLKFSKQLVKDISQLVFLHMRFYGYGDSAWTD 406
Query: 316 ---LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPL 362
Y+ ++ KL + + + + + D+
Sbjct: 407 SAVRRYVTDAGDLLPKLHMLVRADCTTRNKRKGARLRRNYDDLERRIEELKEKEDLAAVR 466
Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
L G+++++ G+ PG +VG K+ ++ E + L
Sbjct: 467 PDLDGNEIMEILGLKPGPEVGQAWAFLKELRLDRGPLGRDEAIAEL 512
>gi|313765090|gb|EFS36454.1| tRNA adenylyltransferase [Propionibacterium acnes HL013PA1]
gi|313815662|gb|EFS53376.1| tRNA adenylyltransferase [Propionibacterium acnes HL059PA1]
gi|314916152|gb|EFS79983.1| tRNA adenylyltransferase [Propionibacterium acnes HL005PA4]
gi|314917414|gb|EFS81245.1| tRNA adenylyltransferase [Propionibacterium acnes HL050PA1]
gi|314921754|gb|EFS85585.1| tRNA adenylyltransferase [Propionibacterium acnes HL050PA3]
gi|314930978|gb|EFS94809.1| tRNA adenylyltransferase [Propionibacterium acnes HL067PA1]
gi|314955350|gb|EFS99755.1| tRNA adenylyltransferase [Propionibacterium acnes HL027PA1]
gi|314959432|gb|EFT03534.1| tRNA adenylyltransferase [Propionibacterium acnes HL002PA1]
gi|315099405|gb|EFT71381.1| tRNA adenylyltransferase [Propionibacterium acnes HL059PA2]
gi|315102383|gb|EFT74359.1| tRNA adenylyltransferase [Propionibacterium acnes HL046PA1]
gi|327454192|gb|EGF00847.1| tRNA adenylyltransferase [Propionibacterium acnes HL087PA3]
gi|327456249|gb|EGF02904.1| tRNA adenylyltransferase [Propionibacterium acnes HL083PA2]
gi|328755949|gb|EGF69565.1| tRNA adenylyltransferase [Propionibacterium acnes HL087PA1]
gi|328758980|gb|EGF72596.1| tRNA adenylyltransferase [Propionibacterium acnes HL025PA2]
Length = 507
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 82/460 (17%), Positives = 156/460 (33%), Gaps = 59/460 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + + + + +VGG+VRD+LM D+D T PD I
Sbjct: 43 INALFEQIPLVAELGEAFAQAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILR 102
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+ + ++GTI ++TT R+D D R ++V+ K D +RRDFT
Sbjct: 103 QHTHATWDIGRAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFT 162
Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + D GL D+ + ++ +D LR++R RF + G +
Sbjct: 163 VNAMALHAATRTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLGF-TV 221
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
++ A ++I+S+ER+ E++K L +P + + I + ++ +S
Sbjct: 222 TNEVRAAMTDMASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALS 281
Query: 243 LDQ----------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKK---------- 276
L++ L Q I+ E+ D R L+ K
Sbjct: 282 LERDEHHRHKDVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGK 341
Query: 277 ------------SILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYL 319
K + P ++ + + + +++
Sbjct: 342 VSFHHHDIVGAKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRD 401
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDD 369
GD+ + +L I + + D+ L G
Sbjct: 402 AGDQ--LERLHILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQ 459
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ GI PG +VG ++ E + LL
Sbjct: 460 IMAILGIKPGPEVGKAYKFLLNLRLDEGPHTPDEAKNALL 499
>gi|154246887|ref|YP_001417845.1| polynucleotide adenylyltransferase region [Xanthobacter
autotrophicus Py2]
gi|154160972|gb|ABS68188.1| Polynucleotide adenylyltransferase region [Xanthobacter
autotrophicus Py2]
Length = 406
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 120/376 (31%), Positives = 193/376 (51%), Gaps = 13/376 (3%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
+SIV ++ L+ +L+ LN +++ +VGGAVR++L+ L V D+DIATT +P+ V
Sbjct: 3 LSIVGAPFWRTPGLMAVLAALNADGEEARVVGGAVRNTLLGLPVSDVDIATTAVPEVVAE 62
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
K K +PT + +GT+ ++ F++TTLR D+ TDGR A V F R W D+ RRD
Sbjct: 63 RARKAGLKPVPTGVEHGTVTVVADHHAFEVTTLREDMETDGRRAVVRFGRSWLHDAERRD 122
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FT+NALYA G V+D VGGL+DL R I+FIGD RI EDYLRILR FRF A YG
Sbjct: 123 FTLNALYATADGAVVDLVGGLSDLTARRIRFIGDPQARIREDYLRILRLFRFHAAYGAGP 182
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+D D +AS++ + GL LS ER+ +E+ KLL A + M + G+ + + + ++
Sbjct: 183 VDKDAFIASVRRRAGLLTLSRERVRTEMLKLLVAPGAAATLAVMSDAGLVQPLIAGIADV 242
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+++ E+ ++ K D++ R + ++ + + + L L +
Sbjct: 243 G--AFTRLAALERDWQAKPDAI-RRLAALAVRVSDDAARLRDRLRLSNAEARRLAALSAT 299
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ ++ Y G + + A + + +V + W P
Sbjct: 300 VSDLP--DAQAVRAFLYRNGVDAALDLALLAAAHGRDGM--------ERVAAMAASWTTP 349
Query: 362 LFPLTGDDVVKYGIPP 377
P D++ G+ P
Sbjct: 350 RLPFAAADLMALGLIP 365
>gi|308069476|ref|YP_003871081.1| tRNA nucleotidyltransferase [Paenibacillus polymyxa E681]
gi|305858755|gb|ADM70543.1| tRNA nucleotidyltransferase (tRNA adenylyltransferase)
[Paenibacillus polymyxa E681]
Length = 440
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 89/427 (20%), Positives = 173/427 (40%), Gaps = 33/427 (7%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
++ L ++ VGG VRD L+ ++ D+D+ T+ P++V+ +F VIPT I
Sbjct: 18 REVIHTLTAAGHEAYWVGGCVRDELLGRAIHDMDLTTSAEPEQVIALFPH----VIPTGI 73
Query: 76 SYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+GT+ ++ F++TT R++ R +V F +D + D +RRDFT+NA+ + G
Sbjct: 74 QHGTVTVMQGGHAFEVTTFRTESGYADHRRPTEVAFVKDIREDLMRRDFTMNAIAMAEHG 133
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+ +D GG DLR ++ +G A R ED LR+LR RF + + + I+
Sbjct: 134 ERVDPFGGEADLRAALVRCVGRAEERFEEDGLRMLRCIRFAS-VFRFRVAYNTWKGMIRR 192
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG--IFKEIFLDVQEISLDQLSQVIE 251
++GL+ ++ ER+ E+ K+L +PL + + G ++ + ++ + L +++
Sbjct: 193 REGLRYIAMERVRVELEKMLVGPDPLRGLEMLSRSGLLGCTKVPVPWEQCEVGALKGIVQ 252
Query: 252 AEQVFEW------------KIDSLLRFIVLISW--QDKKSILSMAKKFSLPREIRYFLIS 297
++ W D LLR + +L +
Sbjct: 253 LQEELRWGLLLMSCRLTSEAADELLRAWTFSNAVRLRLVHLLEWETELIYSAGAIAGDSV 312
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF--LALHYNNLTHQDTCFILQVLSDI 355
+ +L G L ++ L + L + + +
Sbjct: 313 PGESDIVNDEALRRSWIRLLIRLGKDTASDWLDLYKTLPASFRGLPPRVEKHVAKTAELA 372
Query: 356 IHW-------KKPLFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
W + +TG+++ P G +G I+ Q E L
Sbjct: 373 SSWTKQAVVVRIKDLNITGNELVQAMNRPGGPWLGQIMEQLLQAVACGDIPNETETLLQE 432
Query: 408 LRKLIAS 414
+++++S
Sbjct: 433 AKRVMSS 439
>gi|157825180|ref|YP_001492900.1| Poly(A) polymerase [Rickettsia akari str. Hartford]
gi|157799138|gb|ABV74392.1| Poly(A) polymerase [Rickettsia akari str. Hartford]
Length = 385
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 128/401 (31%), Positives = 188/401 (46%), Gaps = 27/401 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
ILSLLNK ++ ++GG VRD+L+ S DIDIAT ++PD V I K K
Sbjct: 10 IPSKGYKKILSLLNKKG-QARLIGGCVRDALLEKSSYDIDIATNLIPDEVTNILLKANIK 68
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I T + +GTI I + F+ITTLR D+ +GR+AKVVFT D+ D+ RRDFTINAL
Sbjct: 69 TIQTGLKFGTITAILNNEQFEITTLRKDIECNGRHAKVVFTDDFAEDAARRDFTINALSY 128
Query: 130 DQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
++ DY G DLR + FIG+A RI EDYLRILRFFRF ++Y +D
Sbjct: 129 CPFKNEIYDYFEGFKDLRQEKVVFIGEALDRIKEDYLRILRFFRFSSYY-TNQLDDGIFK 187
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI-FKEIFLDVQEISLDQLS 247
A K GLK LS ERI SE++K++ +K + M+ GI + EI + S
Sbjct: 188 ACKALKDGLKTLSRERIKSEMDKIIVSKRAEQILKAMFEIGILELIFSIQNYEIKFFEQS 247
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+ +E + + +L + K + + + S+ + F +K
Sbjct: 248 KALELATNYALLLYNLKNINSKLLLDWKFTKQEVIQILSIINFLNNAECDIKKIWFEKKN 307
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
+ A L H + ++ P F + G
Sbjct: 308 YKEY-------------------LLAASIIGKLNHSQVKEFIHKYDPLLR---PKFQVNG 345
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+D++ I K++G L + K WI+ F+ S+ +L L
Sbjct: 346 NDLLNMNIEK-KEIGAKLEYLKNFWIDQDFKPSKSELLEKL 385
>gi|29830842|ref|NP_825476.1| RNA nucleotidyltransferase [Streptomyces avermitilis MA-4680]
gi|29607955|dbj|BAC72011.1| putative RNA nucleotidyltransferase [Streptomyces avermitilis
MA-4680]
Length = 480
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 78/454 (17%), Positives = 159/454 (35%), Gaps = 53/454 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +VGG+VRD+L+ D+D T P+ V++I +
Sbjct: 27 SPVADELARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADAMW 86
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+
Sbjct: 87 EVGIAFGTVGAQKEGYQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVA 146
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + ID GGL+DL R ++ G +D LR++R RF A + D + A
Sbjct: 147 LPEKEFIDPHGGLDDLAARILRTPGTPEESFSDDPLRMMRAARFAAQLDF-EVAPDVVTA 205
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ---- 245
+ + I+S+ER+ E+NKL+ + +P + + + G+ + ++ + L++
Sbjct: 206 MTEMAGRIDIVSAERVRDELNKLVLSAHPRKGLTLLVDTGLADHVLPELPALRLERDEHH 265
Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-------------------- 276
L + +A + E D LR L+ K
Sbjct: 266 RHKDVYDHSLIVLEQAIALEENGPDLTLRLAALLHDIGKPRTRRFEKDGRVSFHHHEVVG 325
Query: 277 --SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
++ + + E Y+ ++ +L
Sbjct: 326 AKMTKKRMTALKYSNDLVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPLLDRLHK 385
Query: 332 FLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + + L G+ +++ G+ PG
Sbjct: 386 LTRSDCTTRNKRRAAALSRAYDGLEERIAQLQEQEELDAIRPDLDGNQIMEVLGVGPGPV 445
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+G + + + + + L++ A
Sbjct: 446 IGQAYKFLLELRLENG-PMEYDAAVAALKEWWAE 478
>gi|47094230|ref|ZP_00231942.1| polyA polymerase [Listeria monocytogenes str. 4b H7858]
gi|226224509|ref|YP_002758616.1| tRNA CCA-adding enzyme [Listeria monocytogenes Clip81459]
gi|254825600|ref|ZP_05230601.1| polyA polymerase [Listeria monocytogenes FSL J1-194]
gi|254931924|ref|ZP_05265283.1| polyA polymerase [Listeria monocytogenes HPB2262]
gi|255520919|ref|ZP_05388156.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL J1-175]
gi|259585845|sp|C1KWK5|CCA_LISMC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|47017402|gb|EAL08223.1| polyA polymerase [Listeria monocytogenes str. 4b H7858]
gi|225876971|emb|CAS05680.1| Putative tRNA CCA-adding enzyme [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|293583476|gb|EFF95508.1| polyA polymerase [Listeria monocytogenes HPB2262]
gi|293594843|gb|EFG02604.1| polyA polymerase [Listeria monocytogenes FSL J1-194]
gi|328466255|gb|EGF37412.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 1816]
gi|332312346|gb|EGJ25441.1| CCA-adding enzyme [Listeria monocytogenes str. Scott A]
Length = 393
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 81/397 (20%), Positives = 156/397 (39%), Gaps = 19/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQ----TSYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ + +++++TT R++ R ++V F R + D RRDFT+NA+ D+
Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEH 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D G ++N+ IK +G A R ED LR++R RF + + +
Sbjct: 124 FALQDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQLDFELDKETEKALESQ 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + + + + L ++ +L + +
Sbjct: 184 IELLQHTSVERITVEWLKMMKGKAAKRAIELLLKVKMETYLPGLKDEKSALSEFASWDWE 243
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ E I L V ++ + K + LP + + + N K
Sbjct: 244 KRTTEESIWLGLVVAVK-----PNNVNAFLKAWKLPNKTIQLVNKAYQYALNMK---ETW 295
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + Y G V ++ + N H+ + Q + K +TG D++K
Sbjct: 296 LTEELYHAGKAVFSLVNELNVIRGQENNQHK----VSQAYEALPIHSKKDLAITGADLLK 351
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G G V L + +++ + + L
Sbjct: 352 WSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWL 388
>gi|302338404|ref|YP_003803610.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Spirochaeta smaragdinae DSM 11293]
gi|301635589|gb|ADK81016.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Spirochaeta smaragdinae DSM 11293]
Length = 451
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 101/451 (22%), Positives = 173/451 (38%), Gaps = 48/451 (10%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+++ + +++ + + + +VGGAVR+ + D D AT P V+ +F
Sbjct: 1 MIRKNFALPTNIRLFGEIFFQRGRECYLVGGAVRNMVAGWKPSDWDFATDAPPSEVISMF 60
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRD 121
+VIPT I +GT+ ++ +++ +++TT R D +DGR V +T D D RRD
Sbjct: 61 R----RVIPTGIKHGTVTVLFKQEKYEVTTFRIDADYSDGRRPDAVTYTGDIYEDLSRRD 116
Query: 122 FTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+ + K+ID G D++ + I+ IGD R ED LR+LR RF A G +
Sbjct: 117 FTINAMAINLNTGKLIDPHDGRADIKRKLIRAIGDPQIRFAEDGLRLLRACRFTAQLGFR 176
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+ S + +S ERI EI K+L+A+ P + M GI +I ++
Sbjct: 177 LEEQTEKALSTCRFQL-SNVSLERIRDEIVKMLDAEKPSIGFLVMEKSGILSDILPELSR 235
Query: 241 I------SLDQLSQVIEAEQVFEWKI--DSLLRFIVLISWQDKKSILSM----------- 281
+ + + L+R L K LS
Sbjct: 236 CRGINQKGFHSFDVLDHSLYACDGAPADRLLIRLAALFHDTGKAVTLSTDEDGFPTFHRH 295
Query: 282 -----------AKKFSLPREIRYFLISFFNCNFNQ--KTLSIPEIKKLFYLYGDKVMIAK 328
++ + + S +++ G + +
Sbjct: 296 EIESEKIAREVMQRLRFSNAQTDAVCHLVKHHMFHYTDDWSDAAVRRFISRVGREHISDL 355
Query: 329 LKIFLALHY--------NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKK 380
+ LA Y I VL + + G D++K GIP G
Sbjct: 356 FALRLADQYGMTARTMEATNLTSFAKRIEAVLDKDMALTLRDLAVNGKDLMKVGIPAGPL 415
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+G IL + ++ +E L + + L
Sbjct: 416 LGTILDQLLEAVLDDPEMNKKERLLAIAKSL 446
>gi|239636869|ref|ZP_04677868.1| cca-adding enzyme [Staphylococcus warneri L37603]
gi|239597543|gb|EEQ80041.1| cca-adding enzyme [Staphylococcus warneri L37603]
Length = 400
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 84/411 (20%), Positives = 160/411 (38%), Gaps = 28/411 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL+ + + ++ VGG+VRD LM + DIDI T+ PD + IF IP
Sbjct: 7 ESAKPILNQIQQHGYQAYFVGGSVRDYLMQRPIHDIDITTSATPDEIESIFDH----TIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R + I R + V F RD D RRDFTINA+ D
Sbjct: 63 IGKEHGTINVVYNHENYEVTTFRAEEEYIDHRRPSDVHFVRDLYEDVQRRDFTINAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ DY G +D++N I+ +G R ED LRILR RF + K + +
Sbjct: 123 TDYQTFDYFNGEDDIKNGIIRTVGQPTERFEEDALRILRGLRFQSQLNFKIENHTFKAMA 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ + + I + + +G + + ++
Sbjct: 183 NQIEDIKYLSIERIIVE--------------LKKLISGRNVATSYHHLNQLKAFNYIPYF 228
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSM-AKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ ++ ID + F I+ + K + + + + N T+S
Sbjct: 229 QNFEMHLLNIDEPMHFDTWIALINSKFDEQQSLSPLKISNKEKSHIKQLTNIISQLPTIS 288
Query: 310 -IPEIKKLFYLYGDKVMIAKLKIFLALHYN-----NLTHQDTCFILQVLSDIIHWKKPLF 363
++ + Y Y ++ +++ L N N + I++ + ++
Sbjct: 289 TKKDLIMMVYDYDINDILTVIELSTLLSKNQFETPNPLMINPQSIMESYHQLPIHERQQL 348
Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G D+++ G V ++L + I + +++ + K +
Sbjct: 349 AVNGSDLMQHLNQRGGPWVKDVLRQIECAVITKQVINTHDEIMKWVDKHVE 399
>gi|89897899|ref|YP_515009.1| poly (A) polymerase [Chlamydophila felis Fe/C-56]
gi|89331271|dbj|BAE80864.1| poly (A) polymerase [Chlamydophila felis Fe/C-56]
Length = 410
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 106/417 (25%), Positives = 170/417 (40%), Gaps = 19/417 (4%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M +I IL L ++ VGG VRD LM +++IDIAT P V
Sbjct: 1 MTTIALET------AKKILQKLRNAGYQAYFVGGCVRDMLMGKPIEEIDIATNAPPVIVS 54
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLR 119
IF + ++G I + + F++ T RSD DGR+ + V K D+LR
Sbjct: 55 TIFPD----TLALGAAFGIIVVKEDSRLFEVATFRSDENYEDGRHPERVVFSSMKEDALR 110
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN +Y D + I D V G D+ R ++ IG R ED LRILR RF + G
Sbjct: 111 RDFTINGMYYDPFEEKIFDLVEGRRDIEKRVVRAIGHPKLRFSEDKLRILRAIRFSSSLG 170
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ +A + +S ERIW E+ K+L+ + P A+ + I IF ++
Sbjct: 171 FTLDPATERAIVREAPTLVNSVSPERIWQELRKMLKQR-PYEALYLLIKLKIITVIFPEL 229
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+++ L IE + + F++ + + +A L+
Sbjct: 230 RDVPPSLLLVNIEFAKKLNPLDFPEICFLLPLFQGVSEEAACVAFTRLRVSNKDLKLVQL 289
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS----- 353
+ Q + L +F A + T Q +Q L
Sbjct: 290 WYQALPQFQNINNNRVFWAHFLASPTASLFLSLFSATQKDPSTQQHFIARVQELETRLEQ 349
Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
I K ++ D++ GI PG+ +G++L + I + L +E + LL++
Sbjct: 350 FIERIKTSSPLVSAPDLISRGIAPGRLLGDLLREAETLSIENEC-LDKEKILSLLKE 405
>gi|313608008|gb|EFR84108.1| CCA-adding enzyme [Listeria monocytogenes FSL F2-208]
Length = 390
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 94/398 (23%), Positives = 169/398 (42%), Gaps = 21/398 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T
Sbjct: 5 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQ----TSYDTG 60
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GTI + +++++TT R++ R ++V F R + D RRDFT+NA+ D+
Sbjct: 61 IAHGTITVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEH 120
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D G ++N+ IK +G A R ED LR++R RF + +D + A
Sbjct: 121 FTLHDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQLDF-ELDKETEKALES 179
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIV-HMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L+ S ERI E K+++ K P AI + L ++ +L + +
Sbjct: 180 QIELLQHTSVERITVEWIKMMKGKAPKRAIELLLKVKMETYLPGLKDEKPALSEFASWDW 239
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
++ E I L V ++ + K + LP + + + K +
Sbjct: 240 EKRTTEESIWLGLVVAVK-----PNNVNAFLKAWKLPNKTIQLVNKAYQDALKMKETWLK 294
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ Y G V ++ + N H+ + Q + K +TG D++
Sbjct: 295 D---ELYHAGKAVFSLVNELNVIRGQENNQHK----LSQAYEALPIHSKKDLAITGADLL 347
Query: 372 KY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K+ G G V L + +++ + + L
Sbjct: 348 KWSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWL 385
>gi|319651319|ref|ZP_08005449.1| hypothetical protein HMPREF1013_02061 [Bacillus sp. 2_A_57_CT2]
gi|317397099|gb|EFV77807.1| hypothetical protein HMPREF1013_02061 [Bacillus sp. 2_A_57_CT2]
Length = 402
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 84/407 (20%), Positives = 161/407 (39%), Gaps = 18/407 (4%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + + +L + ++ VGG+VRD ++ + D+DIAT+ P+ V IF
Sbjct: 1 MNEAFLR---AVPVLENIEAAGYEAYFVGGSVRDFILGKEIADVDIATSAAPEEVKTIFP 57
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDF 122
+ + I +GT+ ++ ++ITT RS + + R +KV F R K D RRDF
Sbjct: 58 ----RTLDVGIEHGTVVVLHNGIPYEITTFRSEAEYLDFRRPSKVQFIRSLKEDLKRRDF 113
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
T+NA+ D++G +ID G + + I +G R ED LR++R RF++ +
Sbjct: 114 TMNAIAMDKKGHLIDPFNGRGAIEEKRICTVGQPAERFTEDALRMMRAVRFYSQLAFEIE 173
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ + A I ++ L + + G
Sbjct: 174 KNTYDALASLAHLLENIAVERKLAEFEKLLAGTSR----MKALMIIGETGLSKYLPNMSG 229
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ E E +D + F+ I D+ + K + LP ++
Sbjct: 230 FQKELMQAEDYNAAELTVDEMWAFLACIFNLDESQAEAFFKSWKLP--VKKIKKILAINK 287
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + Y G + A+ + + +H ++ D ++ + + ++
Sbjct: 288 WIRYRAKNMWDAYSLYQAGCVSLNAERVLNVIVHEDSSRGTDI--LVSKYNCLPIKERSD 345
Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
LTGD+++ +G PPG + IL ++ + S E + L
Sbjct: 346 LQLTGDNLMDWFGKPPGPWIKAILEKTEEAVLRGELNNSNESIREWL 392
>gi|62185492|ref|YP_220277.1| putative poly A polymerase [Chlamydophila abortus S26/3]
gi|62148559|emb|CAH64330.1| putative poly A polymerase [Chlamydophila abortus S26/3]
Length = 410
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 107/417 (25%), Positives = 169/417 (40%), Gaps = 19/417 (4%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M +I IL L ++ VGG VRD LM +++IDIAT+ P V
Sbjct: 1 MTTIALEA------AKKILLKLRNAGYQAYFVGGCVRDMLMGKPIEEIDIATSAPPVIVS 54
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLR 119
IF + ++G I + + F++ T RSD TDGR+ + V K D+LR
Sbjct: 55 TIFPD----TLAIGAAFGIIVVKENNRLFEVATFRSDENYTDGRHPERVIFSSMKEDALR 110
Query: 120 RDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN +Y D + D V G DL R I+ IG R ED LRILR RF + G
Sbjct: 111 RDFTINGMYYDPFEEKLYDLVEGRRDLEKRVIRAIGHPKLRFSEDKLRILRAIRFSSSLG 170
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ +A + +S ERIW E+ K+L+ P A+ + I IF ++
Sbjct: 171 FTLDPATERAIIKEAPSLVCSVSPERIWQELKKMLKKN-PYEALSLLIQLKIMTIIFPEL 229
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
++I L E + + F++ + + +A LI
Sbjct: 230 RDIPPSLLRTSSEFAKRLNPLDFPEICFLLPLFQGVSEEAACVAFTRLRISNKDLKLIQL 289
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD---- 354
+ Q + L +F A + Q +Q L +
Sbjct: 290 WYQALPQFQNVSNNRVFWAHFLASPTAHLFLSLFSATQKDPSQQQHFIARVQELEERLEQ 349
Query: 355 -IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
I+ K ++ D++ GI PG+ +G++L + I + +E + LL++
Sbjct: 350 FIVRIKTASPLVSAPDLIARGIAPGRLLGDLLKEAEILSIENECH-DKEKILTLLKE 405
>gi|328957360|ref|YP_004374746.1| tRNA CCA-pyrophosphorylase [Carnobacterium sp. 17-4]
gi|328673684|gb|AEB29730.1| tRNA CCA-pyrophosphorylase [Carnobacterium sp. 17-4]
Length = 401
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 96/399 (24%), Positives = 172/399 (43%), Gaps = 17/399 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+ + + K+ VGG+VRD+L+N + D+DIAT+ P+ + IF K I
Sbjct: 9 KQALPIIDKIEEAGFKAYFVGGSVRDTLLNKPINDVDIATSAKPNEIKGIFP----KTID 64
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + ++ITT R++ R V F R K D RRDFTINAL +
Sbjct: 65 VGIEHGTVMVLWKDASYEITTFRTESTYQDFRRPDTVEFVRSLKEDLKRRDFTINALAMN 124
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G++IDY G DL N+ IK +G R ED LR++R RF + N+DS+ A
Sbjct: 125 RDGEIIDYFNGQKDLENKLIKAVGIPEERFFEDALRMMRGVRFVSQLNF-NMDSETEAAI 183
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K LK ++ ERI E KLL + ++ ++ S +L
Sbjct: 184 QKNHPLLKKIAIERIQVEFVKLLLGSGRKQGL-GLFIRTNLFYYCPGLK-GSKKELEAFA 241
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E V E +I + I + + + + ++ + + L
Sbjct: 242 KLECVIENRIVAWTLLIHHLKKTS-DDVEPFLRAWKCSKKEINQVK--LAMIALEHRLKD 298
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+++ Y G ++ + + L Y + + + ++ + K + GDD+
Sbjct: 299 DFNRQVLYQVGLQIALDVETVMDCLGY----PINFESVQMMYQELPIYSKHDLEVDGDDL 354
Query: 371 V-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
PGK +GN++ + ++ + + +
Sbjct: 355 QVVLNRKPGKWLGNLITEIETTILSGELANEKSVIVEWI 393
>gi|114799278|ref|YP_759076.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Hyphomonas neptunium ATCC 15444]
gi|114739452|gb|ABI77577.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Hyphomonas neptunium ATCC 15444]
Length = 381
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 122/382 (31%), Positives = 195/382 (51%), Gaps = 15/382 (3%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
VGG+VR++L L +D+DIAT +LP +VIPT I +GT+ +
Sbjct: 13 RYVGGSVRNTLRGLKAEDVDIATQLLPQETAAALEAAGIRVIPTGIEHGTVTAFYKGVPI 72
Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID-YVGGLNDLRNR 148
+ITTLR D+ TDGR A V FT+DW D+ RRDF +NA+YA +G++ + G ++D
Sbjct: 73 EITTLRRDVETDGRRAVVAFTQDWAEDAARRDFRMNAIYAGAEGELYEVIPGSIDDAIAG 132
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208
+ FIG+ R++EDYLRILRF+RF A YG ID DG A + ++GL+ +++ERIW E
Sbjct: 133 RVIFIGEGDQRLIEDYLRILRFYRFNAWYG-AGIDEDGQGACARQREGLRKIAAERIWKE 191
Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
+ + L A +P A+ M G+ + + L L+ V E D + R +
Sbjct: 192 LKRTLAAPDPAPAMAAMEEAGVLEILLPGASAALLPGLAAV---EAANGLAPDPMQRLMA 248
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL-FYLYGDKVMIA 327
L+ + ++ + A L + L ++ + P ++ Y + + ++
Sbjct: 249 LLPRR-QRDVTDAANALRLSNQEAARLQAWADPALGHVLALGPAPRREACYRFTPQAVLD 307
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
+ I A + +L + HW +P+FP+ G D + G+ G +G L
Sbjct: 308 RALIEAASGGEGS-------LTPLLQEKAHWMRPVFPIGGQDALAAGLK-GPDIGKRLYT 359
Query: 388 CKQEWINSSFQLSQEDLHHLLR 409
+Q WI S F+LS+EDL L+
Sbjct: 360 LEQAWIASGFRLSREDLLSRLK 381
>gi|302333068|gb|ADL23261.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 400
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 92/410 (22%), Positives = 162/410 (39%), Gaps = 26/410 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A
Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSF-DIATETFEAM 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+K LS ERI E+ KL+ N + H+ + F + + ++Q++
Sbjct: 182 RTQMADIKFLSIERIVIELTKLMRGNNVEESFNHLKSLKAFNY-MPYFEHLDINQINVTE 240
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ I S+ K I K L + + ++
Sbjct: 241 PIDLELLIAIVSV-----------KFDINYSLKPLKLSNRQVKDINQYIQIMNALPSVIT 289
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPLFP 364
E K+F D +I + + + N + I + L + +
Sbjct: 290 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMM 349
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 350 VNGGVLMAYLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399
>gi|302875215|ref|YP_003843848.1| Polynucleotide adenylyltransferase region [Clostridium
cellulovorans 743B]
gi|307688896|ref|ZP_07631342.1| Polynucleotide adenylyltransferase region [Clostridium
cellulovorans 743B]
gi|302578072|gb|ADL52084.1| Polynucleotide adenylyltransferase region [Clostridium
cellulovorans 743B]
Length = 454
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 103/437 (23%), Positives = 190/437 (43%), Gaps = 43/437 (9%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ +L + ++ IVGG VRDS++ + +D DI T+ P+ ++ +F+ +PT
Sbjct: 13 VKKIVGILYRSNHEAFIVGGCVRDSILGIKPKDWDITTSAEPEEIIELFNSEGCTTVPTG 72
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYA-KVVFTRDWKADSLRRDFTINALYADQQ 132
I +GTI ++ K+ F+ITT R D R+ +V FT+ + D RRD+TINA+ + +
Sbjct: 73 IKHGTITVVIEKEPFEITTYRIDGEYKDSRHPSEVKFTKSLEEDLKRRDYTINAMAYNDK 132
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++DY G D+ + I+ +G+ R+ ED LR+LR RF A G I+ + A
Sbjct: 133 VGLVDYFNGQEDIDKKLIRAVGEPKKRLEEDALRMLRAHRFSAQLGF-KIEKETSEAIKA 191
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ----------EIS 242
++ +S ERI E NK+L + N + +Y G+ + F ++ +IS
Sbjct: 192 LSVNIRQVSIERIREEFNKILLSNNLVQLFQ-LYENGLLQHFFGELANCFERSKKKGDIS 250
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ +IE Q E ++ ++ + ++ K + + N
Sbjct: 251 IYSHVYLIELLQSIEKELSLRWAILINYINEFSYNLEDTLVKPNQCKYSTTSQDCASNIL 310
Query: 303 FNQKTLSIP-------------------EIKKLFYLYGDKVMIAKLKIFLA---LHYNNL 340
K + IK++ G + A ++I A L N
Sbjct: 311 KRMKYDNKTIERVLVLAKYQEVIISDKVAIKRILNTTGIENFKALVEIKEAKIKLQSEND 370
Query: 341 THQDTCFILQVLSDI-------IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
++ I+++ + + + G+D++K G+ PGK +G IL I
Sbjct: 371 INEGMKEIVRIKEEFYEIISSNQCFTIKDLAVKGEDIIKLGVKPGKFIGEILNTLLDMVI 430
Query: 394 NSSFQLSQEDLHHLLRK 410
N + L +++
Sbjct: 431 NEPEINEKHILIGKVKE 447
>gi|52080753|ref|YP_079544.1| tRNA CCA-pyrophosphorylase [Bacillus licheniformis ATCC 14580]
gi|52786124|ref|YP_091953.1| tRNA CCA-pyrophosphorylase [Bacillus licheniformis ATCC 14580]
gi|319645289|ref|ZP_07999522.1| CCA-adding enzyme [Bacillus sp. BT1B_CT2]
gi|73619750|sp|Q65I54|CCA_BACLD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|52003964|gb|AAU23906.1| tRNA nucleotidyltransferase [Bacillus licheniformis ATCC 14580]
gi|52348626|gb|AAU41260.1| Cca [Bacillus licheniformis ATCC 14580]
gi|317393098|gb|EFV73892.1| CCA-adding enzyme [Bacillus sp. BT1B_CT2]
Length = 397
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 91/398 (22%), Positives = 155/398 (38%), Gaps = 16/398 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L K ++ VGGAVRD+ MN V DIDIAT P+ + IF K +
Sbjct: 8 ALPLLRELKKHGWQAYFVGGAVRDAQMNRDVGDIDIATDASPEEIEAIFP----KTVDVG 63
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GTI ++ + +++TT R + R + V F + K D RRD TINA+ D++
Sbjct: 64 KEHGTIIVLFEGESYEVTTFRAELEYEDYRRPSGVQFIKSLKEDLKRRDLTINAMAMDEE 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++IDY GGL D+R R I+ +GD R ED LR+LR RF + + +
Sbjct: 124 GRLIDYFGGLRDIRERLIQTVGDPAERFHEDALRMLRALRFMSQLEFELSPNTKKAICEN 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
I + + L + + + L+
Sbjct: 184 RPLLAHISTERKTVEFEKLLKGKAAGRA--LEAAAETGLYKELPGLDGKKERVLAARAFP 241
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ D FI +IS ++ + + IR L + + +S
Sbjct: 242 FYQLQKSADIWAAFIHMISINPAEAHRFLKGWKLPGKVIRQALHTAERIDQKWDAVS--- 298
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G++ ++A I + + I Q + ++G D++
Sbjct: 299 ----MYEAGEETLLAASAIRSLRDKQAIDEEQLAEIRQSYQALPIKSLKDLAVSGSDLLN 354
Query: 373 YGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ P GK V + L ++ +N ++ + L
Sbjct: 355 FRKKPAGKWVSDDLKRIERAVLNGELANQKKAIEEWLD 392
>gi|196230079|ref|ZP_03128942.1| tRNA adenylyltransferase [Chthoniobacter flavus Ellin428]
gi|196225676|gb|EDY20183.1| tRNA adenylyltransferase [Chthoniobacter flavus Ellin428]
Length = 447
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 71/439 (16%), Positives = 142/439 (32%), Gaps = 40/439 (9%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ L + GG VRD LM + D DIAT P++V +F + I
Sbjct: 8 AESARRVVQQLQDAGFIAYYAGGCVRDQLMGVEPHDYDIATNAHPEQVQNLFR----RTI 63
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+G I ++ F + T R+D DGR + V + D+ RRDFTIN L+ D
Sbjct: 64 AVGAHFGVIIVLQDDFEFQVATFRNDGQYIDGRRPESVSFATPEEDATRRDFTINGLFFD 123
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ G + + + L + L F ++D A
Sbjct: 124 PIAGKLIDYVGGQQDLAKKMLRAIGNPYDRLREDRLRLLRAVRFGATLCFDLDGATWRAV 183
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ + + +S+ERI E+ K+ + + + G+ + +++ + +
Sbjct: 184 CENARHIHEVSAERIREELVKIFLSPKRVRGFDLLDESGLMAAVLPEIEALKGCEQPPQF 243
Query: 251 EAEQVFEWKIDSLL---------------------------------RFIVLISWQDKKS 277
E +L +
Sbjct: 244 HPEGDVFVHTRIMLGLLPTQVSVPLVLSVLFHDIGKPGTYAVDPDGRIRFSGHDKLGAEM 303
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
++ + R + + K + + KL M +L++
Sbjct: 304 TEALMSRLRFSRAEIDATVEAVANHMVFKDVQQMRVAKLKRFLARPHMEDELELHRVDCT 363
Query: 338 NNLTHQDTCFILQVLSDIIHWK--KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
++ D L+ + + P +TG +++ G+ PG + IL + +
Sbjct: 364 SSHGMLDNYEYLKAKREEFANEPLIPPPLITGRELIALGLKPGPRFAEILEAVQSRQLEG 423
Query: 396 SFQLSQEDLHHLLRKLIAS 414
+ + S+E L + +
Sbjct: 424 TLKTSEEALEWVKNDWLGE 442
>gi|328473515|gb|EGF44358.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 220]
Length = 387
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 80/390 (20%), Positives = 154/390 (39%), Gaps = 19/390 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQ----TSYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ + +++++TT R++ R ++V F R + D RRDFT+NA+ D+
Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEH 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D G ++N+ IK +G A R ED LR++R RF + + +
Sbjct: 124 FALQDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQLDFELDKETEKALESQ 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + + + + L ++ +L + +
Sbjct: 184 IELLQHTSVERITVEWLKMMKGKAAKRAIELLLKVKMETYLPGLKDEKSALSEFASWDWE 243
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ E I L V ++ + K + LP + + + N K
Sbjct: 244 KRTTEESIWLGLVVAVK-----PNNVNAFLKAWKLPNKTIQLVNKAYQYALNMK---ETW 295
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + Y G V ++ + N H+ + Q + K +TG D++K
Sbjct: 296 LTEELYHAGKAVFSLVNELNVIRGQENNQHK----VSQAYEALPIHSKKDLAITGADLLK 351
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQ 401
+ G G V L + +++ +
Sbjct: 352 WSGESAGPWVKETLDKVECGVLSNEINNEK 381
>gi|313814283|gb|EFS51997.1| tRNA adenylyltransferase [Propionibacterium acnes HL025PA1]
Length = 507
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 83/460 (18%), Positives = 154/460 (33%), Gaps = 59/460 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + + + + +VGG+VRD+LM D+D T PD I
Sbjct: 43 INALFEQIPLVAELGEAFAQAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILR 102
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+ + ++GTI ++TT R+D D R ++V+ K D +RRDFT
Sbjct: 103 QHTHATWDIGRAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFT 162
Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + D GL D+ + ++ +D LR++R RF + G +
Sbjct: 163 VNAMALHAATRTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLGF-TV 221
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
++ A ++I+S+ER+ E++K L +P + + I + ++
Sbjct: 222 TNEVRAAMTDMASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALR 281
Query: 239 ------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK---------- 276
E SL L Q I+ E+ D R L+ K
Sbjct: 282 LERDEHHRHKDVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGK 341
Query: 277 ------------SILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYL 319
K + P ++ + + + +++
Sbjct: 342 VSFHHHDIVGAKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRD 401
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDD 369
GD+ + +L I + + D+ L G
Sbjct: 402 AGDQ--LERLHILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQ 459
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ GI PG +VG ++ E + LL
Sbjct: 460 IMATLGIKPGPEVGKAYKFLLNLRLDEGPHTPDEAKNALL 499
>gi|229010946|ref|ZP_04168142.1| CCA-adding enzyme [Bacillus mycoides DSM 2048]
gi|229166483|ref|ZP_04294239.1| CCA-adding enzyme [Bacillus cereus AH621]
gi|228617057|gb|EEK74126.1| CCA-adding enzyme [Bacillus cereus AH621]
gi|228750346|gb|EEM00176.1| CCA-adding enzyme [Bacillus mycoides DSM 2048]
Length = 385
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 88/393 (22%), Positives = 177/393 (45%), Gaps = 15/393 (3%)
Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
+L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + +GT+
Sbjct: 1 MLKQHGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLEHGTV 56
Query: 81 KIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138
++ + +++TT R+ + R + V F R + D RRDFT+NA+ ++G+++D
Sbjct: 57 IVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGEMVDL 116
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198
G +R + I +GDA R ED LR++R RF + G +++ A L+
Sbjct: 117 FAGKEAIRLKEITTVGDAADRFQEDALRMMRGIRFVSTLGF-SLEIKTKQAIETYGHLLE 175
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
++ ERI E KLL +N + + +F L ++S ++L + + +
Sbjct: 176 HIAIERITVEFEKLLTGTYCVNGLQELVETKLF--SHLPYLQMSEERLLKATQYKWDSFE 233
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
F + ++ S+ KFS + + + +K L Y
Sbjct: 234 TDVEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLAIRSRKEKEWDTI----LLY 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPP 377
G ++ +++ A+ + + + + + +TG+D++ + P
Sbjct: 290 KTGIRIAEMAERVYEAI-IESYNSASVKQVQSLFHALPIKNRQEMNVTGNDLLSWTDKKP 348
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G V +L + ++ + +ED+ L++
Sbjct: 349 GPWVAEMLQNIEEAIVQGDLVNKKEDIREWLQR 381
>gi|332298006|ref|YP_004439928.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Treponema brennaborense DSM 12168]
gi|332181109|gb|AEE16797.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Treponema brennaborense DSM 12168]
Length = 469
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 94/461 (20%), Positives = 178/461 (38%), Gaps = 71/461 (15%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+L + + ++ + +VGGAVRD + + D D+AT P +V +F +VIPT
Sbjct: 9 ELQKMHEIFSEHGFSAYLVGGAVRDIVRGKTASDWDVATNATPQQVTDMFR----RVIPT 64
Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFT-RDWKADSLRRDFTINALYADQ 131
I++GT+ + K+ ++TT R++ +DGR+ V + D RRDFT+NA+ A+
Sbjct: 65 GIAHGTVTVHFMKREVEVTTFRTETGYSDGRHPDSVKFAATIEDDLSRRDFTMNAIAANL 124
Query: 132 QGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+I D GG +D++ I+ +G+A R ED LR +R RF A G +ID L A
Sbjct: 125 ADGLIVDPFGGRDDIKANVIRTVGNADERFAEDGLRPIRALRFAAQLGF-SIDPATLAAV 183
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---------QEI 241
+AK+ +S ER E K+L+A P A+ M + G+ + ++
Sbjct: 184 PRAKEKTAGVSIERFRDEFVKMLKAPQPSLALRLMEDTGMLRLFLPELAACRGVEQADAR 243
Query: 242 SLDQLSQVIEA--------------------------------------EQVFEWKIDSL 263
+ + ++ E
Sbjct: 244 GFHRFDVLDHLLYACDGAPARKLEVRLAALFHDAGKPAVKRTEIRERVSDRAGEPPPAET 303
Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF--NQKTLSIPEIKKLFYLYG 321
+ ++ ++ P + + + + + + +++
Sbjct: 304 IYTFYNHETVSASITKNVLERLRFPNALTTAVCHLVKNHMFHYESSWTDAAVRRFLVRVT 363
Query: 322 DKVMIAKLKIFLALHYNN-------LTHQDTCFILQVLSDIIHWKK-------PLFPLTG 367
+ + + +A Y + +L++ I + G
Sbjct: 364 PQAVEDLFDLRIADVYGMTGVPPQLKNGVWSENLLELKDRIDAITAQNTALTLKDLAVNG 423
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
D+++ GIP GK++G+IL I+ Q +E L +
Sbjct: 424 ADLIRAGIPAGKRLGHILRELLDTVIDDPKQNDRETLLRIA 464
>gi|298694748|gb|ADI97970.1| probable PolyA polymerase family protein [Staphylococcus aureus
subsp. aureus ED133]
Length = 400
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 92/410 (22%), Positives = 162/410 (39%), Gaps = 26/410 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 63 VGKEHGTINVVFDDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A
Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSF-DIATETFEAM 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+K LS ERI E+ KL+ N + H+ + F + + ++Q++
Sbjct: 182 CTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNY-MPYFEHLDMNQINVTE 240
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ I S+ K I K L + + ++
Sbjct: 241 PIDLELLIAIVSV-----------KFDINYSLKPLKLSNRQAKDINQYIQIMNALSSIIT 289
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPLFP 364
E K+F D +I + + + N + I + L + +
Sbjct: 290 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLQHLPMHNRKDMM 349
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 350 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399
>gi|150016764|ref|YP_001309018.1| tRNA adenylyltransferase [Clostridium beijerinckii NCIMB 8052]
gi|149903229|gb|ABR34062.1| tRNA adenylyltransferase [Clostridium beijerinckii NCIMB 8052]
Length = 443
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 99/440 (22%), Positives = 172/440 (39%), Gaps = 50/440 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++ I+ L + ++ +VGG VRD ++ +D DI T P V+ +F KVI
Sbjct: 9 KNVALIIDRLLENGYEAYMVGGCVRDCILGKEPKDWDITTNAKPLEVVELFD----KVIL 64
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++ K+ ++ITT RSD + R+ K F K D RRDFTIN++ +
Sbjct: 65 TGLKHGTVTVMLNKESYEITTYRSDGEYEDNRHPKEVKFVSSLKEDLARRDFTINSMAYN 124
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++DY G+ DL + I+ +G+ R ED LR+LR RF A ID L +
Sbjct: 125 NISGLVDYFNGIEDLDEKVIRTVGEPRKRFGEDALRMLRAIRFSAQLDF-TIDRLTLNSI 183
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ K ++ +S ERI E NK+L I + GI + I + +I +
Sbjct: 184 KELKDNIRNISKERIREEFNKILLNNP--RKIEMLRECGILEYIVPGISKIYNFNKNNSC 241
Query: 251 EAEQVFEW--------------KIDSLLR----------------FIVLISWQDKKSILS 280
+ ++ K+ L S + +
Sbjct: 242 HSHDLYNHAIIATETVESQIYLKLSMLFHDFGKACTIRTDENDNLHCSSYSKESSRIANE 301
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ K + + + + IKKL G + +KI A
Sbjct: 302 ILKYLKYDNNTINKVTLLIQYHDYRMD-NKVSIKKLLREIGIDLFKDLIKIKRADILAQE 360
Query: 341 THQDTCFIL----------QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390
+ ++ +++ + + G D++ G GK++G IL H
Sbjct: 361 SKNSKKHLINLDGVENILNKIIDKDECFTLKNLKINGGDLLSLGFNKGKEIGEILNHLLD 420
Query: 391 EWINSSFQLSQEDLHHLLRK 410
I +++L L+ K
Sbjct: 421 IVIEDPKSNEKQELIKLVMK 440
>gi|23099220|ref|NP_692686.1| poly(A)polymerase [Oceanobacillus iheyensis HTE831]
gi|73619814|sp|Q8EQD6|CCA_OCEIH RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|22777449|dbj|BAC13721.1| poly(A)polymerase [Oceanobacillus iheyensis HTE831]
Length = 400
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 100/409 (24%), Positives = 173/409 (42%), Gaps = 21/409 (5%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
++ + S IL+ L + VGG VRD L+ + DIDIAT+ P+ VM +F
Sbjct: 1 MISEPFLKASP---ILTTLISNGYEGYFVGGCVRDLLLQKDIHDIDIATSATPNEVMHLF 57
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRD 121
KVIP I +GT+ + + +++TT R + R V F + D RRD
Sbjct: 58 K----KVIPVGIEHGTVIVRHGGESYEVTTYRQDGEYTDHRRPNDVRFVTNLAEDLRRRD 113
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FTINAL D G++ D G +DL+ + I+ +G+A R ED LRILR RF + G
Sbjct: 114 FTINALAMDTSGQITDLFHGQDDLKKKLIRTVGNAEERFTEDALRILRAVRFSSQLGC-T 172
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
I D L A +K ++ L+ ERI E+ KL + ++ AI ++ + + +++ Q
Sbjct: 173 IQEDTLEAMFVIRKQIQHLAVERITIELTKLFQGQHVSKAIQYIIDLQLDEQL-PIFQSG 231
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
D + E + + V I K + ++ I N
Sbjct: 232 KSDIFKAMKENITPLHSFSEVI---AVFHLLDPTIKIHDWIKNYKCSNHVKNDTIQLINA 288
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
++ I L Y+ K+ +++ + + + I L K+
Sbjct: 289 YHYYQSHGINNW--LLYILPTKLWDGFIRLIYVIDRTTIERKQLEEITATL---PIDKRS 343
Query: 362 LFPLTGDDVVKY--GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
L G+D++ + P GK + +L + ++ ++ + +
Sbjct: 344 QLHLDGNDLMNWFPHRPKGKWIKILLEEVEYLVVSKQLPNEKKIIKEWV 392
>gi|229058273|ref|ZP_04196660.1| CCA-adding enzyme [Bacillus cereus AH603]
gi|228720044|gb|EEL71630.1| CCA-adding enzyme [Bacillus cereus AH603]
Length = 385
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 88/393 (22%), Positives = 177/393 (45%), Gaps = 15/393 (3%)
Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
+L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + +GT+
Sbjct: 1 MLKQHGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLEHGTV 56
Query: 81 KIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138
++ + +++TT R+ + R + V F R + D RRDFT+NA+ ++G+++D
Sbjct: 57 IVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGEMVDL 116
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198
G +R + I +GDA R ED LR++R RF + G +++ A L+
Sbjct: 117 FAGKEAIRLKEITTVGDAADRFQEDALRMMRGIRFVSTLGF-SLEIKTKQAIETYGHLLE 175
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
++ ERI E KLL +N + + +F L ++S ++L + + +
Sbjct: 176 HIAIERITVEFEKLLTGTYCVNGLQELVETKLF--SHLPYLQMSEERLLKATQYKWDSFE 233
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
F + ++ S+ KFS + + + +K L Y
Sbjct: 234 TDVEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLAIRSRKEKEWDTI----LLY 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPP 377
G ++ +++ A+ + + + + + +TG+D++ + P
Sbjct: 290 KTGIRIAEMAERVYEAI-IESYNSASVKQVQSLFHALPIKNRQEMNVTGNDLLSWADKKP 348
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G V +L + ++ + +ED+ L++
Sbjct: 349 GPWVAEMLQNIEEAIVQGDLVNKKEDIREWLQR 381
>gi|289424329|ref|ZP_06426112.1| tRNA adenylyltransferase [Propionibacterium acnes SK187]
gi|295131827|ref|YP_003582490.1| tRNA adenylyltransferase [Propionibacterium acnes SK137]
gi|289155026|gb|EFD03708.1| tRNA adenylyltransferase [Propionibacterium acnes SK187]
gi|291375544|gb|ADD99398.1| tRNA adenylyltransferase [Propionibacterium acnes SK137]
Length = 499
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 83/460 (18%), Positives = 154/460 (33%), Gaps = 59/460 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + + + + +VGG+VRD+LM D+D T PD I
Sbjct: 35 INALFEQIPLVAELGEAFAQAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILR 94
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+ + ++GTI ++TT R+D D R ++V+ K D +RRDFT
Sbjct: 95 QHTHATWDIGRAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFT 154
Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + D GL D+ + ++ +D LR++R RF + G +
Sbjct: 155 VNAMALHAATRTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLGF-TV 213
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
++ A ++I+S+ER+ E++K L +P + + I + ++
Sbjct: 214 TNEVRAAMTDMASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALR 273
Query: 239 ------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK---------- 276
E SL L Q I+ E+ D R L+ K
Sbjct: 274 LERDEHHRHKDVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGK 333
Query: 277 ------------SILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYL 319
K + P ++ + + + +++
Sbjct: 334 VSFHHHDIVGAKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRD 393
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDD 369
GD+ + +L I + + D+ L G
Sbjct: 394 AGDQ--LERLHILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQ 451
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ GI PG +VG ++ E + LL
Sbjct: 452 IMAILGIKPGPEVGKAYKFLLNLRLDEGPHTPDEAKNALL 491
>gi|229132445|ref|ZP_04261299.1| CCA-adding enzyme [Bacillus cereus BDRD-ST196]
gi|228651151|gb|EEL07132.1| CCA-adding enzyme [Bacillus cereus BDRD-ST196]
Length = 385
Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 88/393 (22%), Positives = 178/393 (45%), Gaps = 15/393 (3%)
Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
+L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + +GT+
Sbjct: 1 MLKQHGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLEHGTV 56
Query: 81 KIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138
++ + +++TT R+ + R + V F R + D RRDFT+NA+ ++G+++D
Sbjct: 57 IVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGEMVDL 116
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198
G +R + I +GDA R ED LR++R RF + G +++ A L+
Sbjct: 117 FAGKEAIRLKEITTVGDAADRFQEDALRMMRGIRFVSTLGF-SLEIKTKQAIETYGHLLE 175
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
++ ERI E KLL + +N + + +F L ++S ++L + + +
Sbjct: 176 HIAIERITVEFEKLLTGTSCVNGLQELVETKLF--SHLPYLQMSEERLLKATQYKWDSFE 233
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
F + ++ S+ KFS + + + +K L Y
Sbjct: 234 TDVEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLAIRSRKEKEWDTI----LLY 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPP 377
G ++ +++ A+ + + + + + +TG+D++ + P
Sbjct: 290 KTGIRIAEMAERVYEAI-IESYNSASVKQVQSLFHALPIKNRQEMNVTGNDLLSWTDKKP 348
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G V +L + ++ + +ED+ L++
Sbjct: 349 GPWVAEMLQNIEEAIVQGDLVNKKEDIREWLQR 381
>gi|313771128|gb|EFS37094.1| tRNA adenylyltransferase [Propionibacterium acnes HL074PA1]
gi|313811705|gb|EFS49419.1| tRNA adenylyltransferase [Propionibacterium acnes HL083PA1]
gi|313832472|gb|EFS70186.1| tRNA adenylyltransferase [Propionibacterium acnes HL007PA1]
gi|313832699|gb|EFS70413.1| tRNA adenylyltransferase [Propionibacterium acnes HL056PA1]
gi|314969145|gb|EFT13243.1| tRNA adenylyltransferase [Propionibacterium acnes HL037PA1]
gi|314975136|gb|EFT19231.1| tRNA adenylyltransferase [Propionibacterium acnes HL053PA1]
gi|314977547|gb|EFT21642.1| tRNA adenylyltransferase [Propionibacterium acnes HL045PA1]
gi|314985106|gb|EFT29198.1| tRNA adenylyltransferase [Propionibacterium acnes HL005PA1]
gi|315096968|gb|EFT68944.1| tRNA adenylyltransferase [Propionibacterium acnes HL038PA1]
gi|315107385|gb|EFT79361.1| tRNA adenylyltransferase [Propionibacterium acnes HL030PA1]
gi|327332438|gb|EGE74173.1| tRNA adenylyltransferase [Propionibacterium acnes HL096PA2]
gi|327446787|gb|EGE93441.1| tRNA adenylyltransferase [Propionibacterium acnes HL043PA2]
gi|327448772|gb|EGE95426.1| tRNA adenylyltransferase [Propionibacterium acnes HL043PA1]
gi|328759834|gb|EGF73424.1| tRNA adenylyltransferase [Propionibacterium acnes HL099PA1]
Length = 507
Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats.
Identities = 83/460 (18%), Positives = 154/460 (33%), Gaps = 59/460 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + + + + +VGG+VRD+LM D+D T PD I
Sbjct: 43 INALFEQIPLVAELGEAFAQAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILR 102
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+ + ++GTI ++TT R+D D R ++V+ K D +RRDFT
Sbjct: 103 QHTHATWDIGRAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFT 162
Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + D GL D+ + ++ +D LR++R RF + G +
Sbjct: 163 VNAMALHAATRTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLGF-TV 221
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
++ A ++I+S+ER+ E++K L +P + + I + ++
Sbjct: 222 TNEVRAAMTDMASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALR 281
Query: 239 ------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK---------- 276
E SL L Q I+ E+ D R L+ K
Sbjct: 282 LERDEHHRHKDVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGK 341
Query: 277 ------------SILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYL 319
K + P ++ + + + +++
Sbjct: 342 VSFHHHDIVGAKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRD 401
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDD 369
GD+ + +L I + + D+ L G
Sbjct: 402 AGDQ--LERLHILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQ 459
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ GI PG +VG ++ E + LL
Sbjct: 460 IMAILGIKPGPEVGKAYKFLLNLRLDEGPHTPDEAKNALL 499
>gi|291543612|emb|CBL16721.1| uncharacterized domain HDIG [Ruminococcus sp. 18P13]
Length = 446
Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats.
Identities = 91/438 (20%), Positives = 168/438 (38%), Gaps = 48/438 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++ + LL + IVGG VRD L+ + D D+ T LP+++ ++F+ + I
Sbjct: 6 PQVLTAMELLEQAGYACHIVGGCVRDMLLGRTPSDYDLTTNALPEQMQQVFASC--RTIE 63
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130
T I++GT+ I+ + TT R D +DGR+ V FT + D RRDFT+NA+
Sbjct: 64 TGIAHGTLTILLEGMSLECTTYRVDGTYSDGRHPDSVRFTPTLEEDLARRDFTVNAMAYH 123
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ + D GG +DL+ ++ +G+ R ED LRILR RF + G ++ + A
Sbjct: 124 PRLGLTDPFGGRDDLKRGILRCVGEPERRFTEDALRILRCVRFASVLGF-AVEPETAAAV 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K+ L+++S+ERI SE++KLL ++ + G + ++
Sbjct: 183 HSMKQRLELVSAERIRSELDKLLMGEHVTEILCR--YGDVVFVPIPELAPCLGFAQHSRY 240
Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDKKSIL----------------------S 280
V+ D LLR +L+ K
Sbjct: 241 HCYDVWTHVAHTVGAAPRDPLLRLTMLLHDVGKPDCFTLDPDGTGHFKGHAPKGAVLAAK 300
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ + + + + +K S ++ G + + + A +
Sbjct: 301 ILPRLRYDKHTCEQVTELIAWH-AEKLRSRASVRHALSRLGAEQFFRLIDVMCADNSAKQ 359
Query: 341 TH---------QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
+ + +L + + G D+V G G+++G +L
Sbjct: 360 PFCLEELPGLLEAADYARALLDAGVCLTLKQLAVNGRDLVAIG-AQGRQIGQVLQMLLDA 418
Query: 392 WINSSFQLSQEDLHHLLR 409
+ + L L +
Sbjct: 419 VVAERASNDRAQLLELAQ 436
>gi|332559679|ref|ZP_08414001.1| polynucleotide adenylyltransferase region [Rhodobacter sphaeroides
WS8N]
gi|332277391|gb|EGJ22706.1| polynucleotide adenylyltransferase region [Rhodobacter sphaeroides
WS8N]
Length = 380
Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats.
Identities = 118/403 (29%), Positives = 185/403 (45%), Gaps = 28/403 (6%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ W + ++L + ++ VGG VR++L+ V DID+AT +P V + S
Sbjct: 3 ISGDWLVQPATQRLCAVLTEAGHRALFVGGCVRNALLGRPVSDIDLATDAVPAAVSALAS 62
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+KV+PT I +GT+ +I ++TT R D+ T GR+A V F+ D D+ RRDFT+
Sbjct: 63 AAGFKVVPTGIDHGTVTVIAGGVPHEVTTFRRDVETFGRHAVVAFSTDVAEDAARRDFTM 122
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--I 182
NALYA+ G VID +GGL DL R ++F+GD RI EDYLRILRFFRF A YG + +
Sbjct: 123 NALYAEASGAVIDPLGGLPDLIARRVRFVGDPIRRIEEDYLRILRFFRFHAIYGAPDEGL 182
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D++GL A +G+ LS ER+ +E+ KLL A +P ++ M G+ + + +
Sbjct: 183 DAEGLAACAARAEGVAQLSRERVGAEMRKLLAADDPAPSVASMECAGVLAVVLPGAEARA 242
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
L L + E D LLR + S+ R +
Sbjct: 243 LPVLVHLEE-----GRAPDWLLR------------LASLGGAEVADRLRLSRADAAALAR 285
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ L+ + Y G ++ + + AL + + +
Sbjct: 286 LREAALAGAPPAEQGYRLGARLGAGAVLLRAALTETPPPAGWEAAVERGAAARFPVAAA- 344
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
D++ G +G L ++ WI S F+L + L
Sbjct: 345 ------DLMPA--LTGPALGARLRALEERWIASDFRLDRAALL 379
>gi|21222303|ref|NP_628082.1| RNA nucleotidyltransferase [Streptomyces coelicolor A3(2)]
gi|256786596|ref|ZP_05525027.1| RNA nucleotidyltransferase [Streptomyces lividans TK24]
gi|289770488|ref|ZP_06529866.1| tRNA adenylyltransferase [Streptomyces lividans TK24]
gi|4808392|emb|CAB42723.1| putative RNA nucleotidyltransferase [Streptomyces coelicolor A3(2)]
gi|289700687|gb|EFD68116.1| tRNA adenylyltransferase [Streptomyces lividans TK24]
Length = 483
Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats.
Identities = 79/461 (17%), Positives = 158/461 (34%), Gaps = 53/461 (11%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ ++ + +VGG+VRD+L+ D+D T P V++I
Sbjct: 20 AREPLRVAPVADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPQDVLKIMR 79
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
V I++GT+ ++TT RS+ R +V + + D +RRDFT
Sbjct: 80 PWADAVWEVGIAFGTVGGQKDGWQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFT 139
Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + ID GGL+DL R ++ G +D LR++R RF A +
Sbjct: 140 VNAMAVALPEKVFIDPHGGLDDLAARVLRTPGTPEDSFSDDPLRMMRAARFAAQLDF-EV 198
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ + A + I+S+ER+ E+NKL+ + +P + + G+ + + ++ +
Sbjct: 199 APEVVKAMHDMAGRIDIVSAERVRDELNKLILSPHPRKGLSLLVETGLAERVLPELPALR 258
Query: 243 LDQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKK------------- 276
L++ L + +A + D LR L+ K
Sbjct: 259 LERDEHHRHKDVYDHTLIVLEQAMALESEGPDLTLRLAALLHDIGKPRTRRFEKDGRVSF 318
Query: 277 ---------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKV 324
++ + + E Y+
Sbjct: 319 HHHEVVGAKMTKKRMIALKYSNDLVRDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGP 378
Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVVK-Y 373
++ +L + + + + L G+ +++
Sbjct: 379 LLDRLHKLTRSDCTTRNKRKASALSRAYDGLEDRIAQLQEQEELDAIRPDLDGNQIMEVL 438
Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
G+ PG VG H + + + + + L++ A
Sbjct: 439 GVRPGPAVGQAYKHLLELRLENG-PMEHDAAVAALKEWWAQ 478
>gi|313884128|ref|ZP_07817894.1| putative tRNA adenylyltransferase [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620575|gb|EFR31998.1| putative tRNA adenylyltransferase [Eremococcus coleocola
ACS-139-V-Col8]
Length = 411
Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats.
Identities = 83/405 (20%), Positives = 166/405 (40%), Gaps = 18/405 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ +++ + ++ VGG VRDSL+ L + DIDI ++ P + IF I
Sbjct: 11 KAAMPVMAQIESHGYEAYFVGGCVRDSLLGLPIHDIDITSSAQPQEIEAIFKH----TID 66
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R R V F R+ + D+LRRDFT+NAL D
Sbjct: 67 VGKEHGTIIVMWDQVPYEVTTFRIEGKYSDHRRPDSVAFVRNLQEDTLRRDFTVNALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+QG+V D+ GL DL+ I+ +G+A R ED LR++R RF + G ++
Sbjct: 127 RQGQVYDFHDGLKDLKAERIRAVGNAEARFQEDGLRMMRALRFASQLGFSIEETTLRAIQ 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-EISLDQLSQV 249
A I LL + + + + + + ++ +LS +
Sbjct: 187 KLAPTLKYISMERIRIEFSKFLLGSYLHTALPYFLDSNLSEYLLLPQGKVDSAIAELSDL 246
Query: 250 IE--AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+E Q F + + + D+ + + +K++ + +++F +
Sbjct: 247 LEETRNQFFANEESFVWMLFLQKLGLDQAKMKKLLRKWTFSNKFIDQVLAFDTLMHFETE 306
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
L Y + ++F + + I+++ + + + + G
Sbjct: 307 LFWSSQTAYAYNLNLLEPVQAYRLF-------RGEKTSKDIVEIKASLPMQDRQDMLVDG 359
Query: 368 DDVV-KYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
DV+ + G +G IL + + ++ QE + +++
Sbjct: 360 KDVMAALELKQGGPLIGQILAIIEAKILHGELSNEQEAIISFVKE 404
>gi|312075805|ref|XP_003140580.1| hypothetical protein LOAG_04995 [Loa loa]
gi|307764256|gb|EFO23490.1| hypothetical protein LOAG_04995 [Loa loa]
Length = 438
Score = 180 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 106/409 (25%), Positives = 181/409 (44%), Gaps = 8/409 (1%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+LI + L + + + GGAVRD LM + DID AT P+ + +F + +
Sbjct: 21 LFTPELIKLNDLFKRNNFQLRMAGGAVRDLLMGIKPSDIDFATNATPEEMKELFIREGIR 80
Query: 70 VI-PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
++ +GTI K+ F+ITTLR D++ DGR AK+ FT W+ D+ RRD T+N+L
Sbjct: 81 MLNKNGEEHGTITCRIDDKENFEITTLRIDIVCDGRRAKIEFTTSWQLDANRRDLTVNSL 140
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ D G V DY GG+ DL R I F+GDA+ RI + + + + L
Sbjct: 141 FLDLDGTVFDYFGGIKDLEKRRIVFVGDANQRIQDITIFPFFG---RLALDGEAHEKATL 197
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
A I GLK +S ERIW+E+ K+ + + M + + +
Sbjct: 198 DAIISNGHGLKDISGERIWTELKKICVGRLGDAVLTTMLKRCNLASLLGLPENPDIAYFC 257
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
++ + + KI+++ L + + K S + I +
Sbjct: 258 KLH---KRYYQKIEAMTLLSSLFTEMKHIELFHKRCKLSYAEKTLAEFIVEHRDEAKKNA 314
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
S K + + K+ + + T +++S++ WK P+FP+ G
Sbjct: 315 NSNLFFKNMLLNEERLHKFTRKKVQTSREKVIELAKYTMVDDELISELNAWKTPVFPVGG 374
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
D++ +PPG V IL H + WI S + +S+E+L + + + +
Sbjct: 375 IDLMYNNVPPGSHVKQILDHLFKIWIESQWMMSKEELLKHVDDIEWNDE 423
>gi|212638965|ref|YP_002315485.1| tRNA CCA-pyrophosphorylase [Anoxybacillus flavithermus WK1]
gi|226702034|sp|B7GHS8|CCA_ANOFW RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|212560445|gb|ACJ33500.1| tRNA nucleotidyltransferase [Anoxybacillus flavithermus WK1]
Length = 397
Score = 180 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 95/398 (23%), Positives = 177/398 (44%), Gaps = 20/398 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++++ L + ++ VGGAVRD L+ + DIDIAT+ P VM IF + +P
Sbjct: 7 QALSVIETLKRHGHEAYFVGGAVRDYLLQRPIGDIDIATSAHPQEVMAIFP----RTVPV 62
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I++GT+ +I R +++TT R R V F R D RRDFT+NA+ ++
Sbjct: 63 GIAHGTVMVIERGISYEVTTFRKEGRYEDYRRPKDVTFVRSLNEDLQRRDFTMNAIAMNE 122
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G++ID GG+ L+ R I+ +GD R ED LR++R RF + G ++ ++ A I
Sbjct: 123 YGEIIDPFGGVEALKQRIIETVGDPAERFNEDALRMMRALRFVSQLGF-SLSTETKQAII 181
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L+ ++ ERI E KLL AI + +F L ++L ++
Sbjct: 182 RYGHLLQHIAVERIAVEFEKLLLGPFVSKAIALLVETNLFAY--LPELATKKEELIKLSS 239
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
V +I++ RF ++ + K + L + ++ + ++L+
Sbjct: 240 YSLVPVDRIEAWARFAFVVHFH-----REQLKNWKLSNHLIRDILICLKALEHIRSLTDW 294
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD-V 370
I Y YG + +I A++ +L+ + + + G D +
Sbjct: 295 TIDA-LYEYG-PYIPHIERIRAAVY---DDKPSVHSLLKQWEMLPIRNRKELAINGHDLL 349
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ +G G + ++ + ++ ++ + +E L
Sbjct: 350 ILFGKKGGPWLSEMIENIERAVLHRQVENEKEKLKEWA 387
>gi|256381055|ref|YP_003104715.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Actinosynnema mirum DSM 43827]
gi|255925358|gb|ACU40869.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Actinosynnema mirum DSM 43827]
Length = 502
Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats.
Identities = 85/457 (18%), Positives = 156/457 (34%), Gaps = 62/457 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSKTRYK 69
+ + + + +VGG+VRD+L+ S D+D T P+++ R+ S
Sbjct: 8 PVADELAARFAEAGHRLYLVGGSVRDALLGRSSGGDFDLDFTTDARPEQIQRLLSGWADG 67
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ T I++GT+ + +ITT R+D R +V F + D +RRDFT+NA+
Sbjct: 68 LWDTGIAFGTVGATKHGRTVEITTFRADSYDGVTRNPEVTFGDTVEGDLVRRDFTVNAMA 127
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D ++ID GG L + +D LR+LR RF + G D
Sbjct: 128 FDVAARELIDPTGGREALAAMVLDTPATPQQSFGDDPLRMLRAARFVSQIGFTPADRVVE 187
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH----------------MYNGGIF 231
+ A + +I ++KLL +P + M
Sbjct: 188 AMTAMAGELERITPERVQQE-LSKLLCGAHPRRGVELFESTGLAAVVLPELPAMRLEIDE 246
Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK--------------- 276
DV + SL L Q I+ E + D +LR L+ K
Sbjct: 247 HHQHKDVFDHSLVVLQQAIDLEDE-DNSPDLVLRLAALLHDIGKPGTRRFESGGGVSFHH 305
Query: 277 -------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
+ + +E+ + + E Y ++
Sbjct: 306 HEVLGAKMVRKRLRALRYSKEVVEEVAQLVYLHLRFHGYGNGEWTDSAVRRYATDAGPLL 365
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGI 375
++L + + + + + ++ L G+++++ G+
Sbjct: 366 SRLHKLVRADCTTRNKRKANALQRTYDGLEERIDRLAAEEDLRRVRPDLDGNEIMRLLGL 425
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE---DLHHLLR 409
PPG +VG K+ ++ E +L R
Sbjct: 426 PPGPQVGRAWKFLKELRLDRGPLDRDEAEVELLAWAR 462
>gi|126463626|ref|YP_001044740.1| polynucleotide adenylyltransferase region [Rhodobacter sphaeroides
ATCC 17029]
gi|126105290|gb|ABN77968.1| Polynucleotide adenylyltransferase region [Rhodobacter sphaeroides
ATCC 17029]
Length = 380
Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats.
Identities = 119/403 (29%), Positives = 185/403 (45%), Gaps = 28/403 (6%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
V W + ++L + ++ VGG VR++L+ V DID+AT +P V + S
Sbjct: 3 VSGDWLVQPATQRLCAVLAEAGHRALFVGGCVRNALLGRPVSDIDLATDAVPAAVSALAS 62
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+KV+PT I +GT+ +I ++TT R D+ T GR+A V F+ D D+ RRDFT+
Sbjct: 63 AAGFKVVPTGIDHGTVTVIAGGVPHEVTTFRRDVETFGRHAVVAFSTDVAEDAARRDFTM 122
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--I 182
NALYA+ G VID +GGL DL R ++F+GD RI EDYLRILRFFRF A YG + +
Sbjct: 123 NALYAEASGAVIDPLGGLPDLIARRVRFVGDPIRRIEEDYLRILRFFRFHAIYGAPDEGL 182
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D++GL A +G+ LS ER+ +E+ KLL A +P ++ M G+ + + +
Sbjct: 183 DAEGLAACAARAEGVAQLSRERVGAEMRKLLAADDPARSVASMECAGVLAVVLPGAEARA 242
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
L L + E D LLR + S+ R +
Sbjct: 243 LPVLVHLEE-----GRAPDWLLR------------LASLGGAEVADRLRLSRADAAALAR 285
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ L+ + Y G ++ + + AL + + +
Sbjct: 286 LREAALAGAPPAEQGYRLGARLGAGAVLLRAALTETPPPAGWEAAVERGAAARFPVAAA- 344
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
D++ G +G L ++ WI S F+L + L
Sbjct: 345 ------DLMPA--LTGPALGARLRALEERWIASDFRLDRAALL 379
>gi|89099892|ref|ZP_01172764.1| tRNA nucleotidyltransferase [Bacillus sp. NRRL B-14911]
gi|89085450|gb|EAR64579.1| tRNA nucleotidyltransferase [Bacillus sp. NRRL B-14911]
Length = 400
Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats.
Identities = 87/412 (21%), Positives = 164/412 (39%), Gaps = 19/412 (4%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M + + +L + ++ VGG+VRD L+ + D+DIAT+ P +
Sbjct: 1 MRDNMNPVFLK---AAPVLEKIETAGYEAYFVGGSVRDYLLGKDISDVDIATSATPMEIK 57
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSL 118
IF +T I +GT+ ++ +++TT R SD R +KV F R D
Sbjct: 58 GIFPRTA----DVGIEHGTVIVLYDGDSYEVTTFRSESDYEDFRRPSKVDFIRSLDEDLK 113
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDF +N++ + G++ID GG D+R++ I +G+ R ED LR++R RF +
Sbjct: 114 RRDFRMNSMAMSKDGRIIDPFGGQEDIRSKRIATVGNPLERFYEDALRMMRAVRFASQLS 173
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ ID + A + L+ ++ ER +E KLL +N A+ M + G+ + L
Sbjct: 174 FQ-IDGETYEALVSEAYLLEKIAVERKLAEFEKLLAGENSFMALKIMADTGLSQH--LPG 230
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+L + + K + + ++IR
Sbjct: 231 LAGKKQELISFAGRLDSGLLSEERWALLSAGLGHDFKTAESFLRSWKMPVKKIRQIGKIL 290
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + + Y G + ++ A D +++ + +
Sbjct: 291 YWLQYRSVQ---NWTLESVYKAGAEAARNAERVLAA---TGDDSADEEVPVRLYASLPIR 344
Query: 359 KKPLFPLTGDDVVKYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+TG+D++++ P G V +L + I+ +E++ L
Sbjct: 345 STKELDVTGNDLIQWFNKPGGPWVKELLGQVENSIISGHLANKKEEIRGWLE 396
>gi|297207883|ref|ZP_06924316.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300911968|ref|ZP_07129411.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp.
aureus TCH70]
gi|296887457|gb|EFH26357.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300886214|gb|EFK81416.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp.
aureus TCH70]
Length = 411
Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats.
Identities = 80/413 (19%), Positives = 159/413 (38%), Gaps = 32/413 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 73
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF +
Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSFDIATETFEAMR 193
Query: 191 IKAKKGL-----KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----VQEI 241
I+ +I+ + ++ N L ++ F+ + ++ + I
Sbjct: 194 IQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYMPYFEHLDMNQINVTEAI 253
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L+ L ++ + + + L + ++ + A + +E + ++
Sbjct: 254 DLELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIITKEQLKMFVYDYDT 313
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + + ++ K + G + +I L I + L + +
Sbjct: 314 HLIKNVMVAADVIKANDIQGHEPLIVNL----------------QTIDETLHRLPMHNRK 357
Query: 362 LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 358 DMMVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410
>gi|257795487|ref|ZP_05644466.1| polynucleotide adenylyltransferase [Staphylococcus aureus A9781]
gi|258413296|ref|ZP_05681572.1| polynucleotide adenylyltransferase [Staphylococcus aureus A9763]
gi|258420597|ref|ZP_05683539.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9719]
gi|258426793|ref|ZP_05688013.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
A9299]
gi|258444791|ref|ZP_05693120.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
A8115]
gi|258447375|ref|ZP_05695519.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
A6300]
gi|258449740|ref|ZP_05697841.1| polynucleotide adenylyltransferase [Staphylococcus aureus A6224]
gi|258454591|ref|ZP_05702555.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
A5937]
gi|282892953|ref|ZP_06301188.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A8117]
gi|282927984|ref|ZP_06335593.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus
aureus A10102]
gi|147741012|gb|ABQ49310.1| Polynucleotide adenylyltransferase region [Staphylococcus aureus
subsp. aureus JH9]
gi|149946458|gb|ABR52394.1| Polynucleotide adenylyltransferase region [Staphylococcus aureus
subsp. aureus JH1]
gi|257789459|gb|EEV27799.1| polynucleotide adenylyltransferase [Staphylococcus aureus A9781]
gi|257839860|gb|EEV64328.1| polynucleotide adenylyltransferase [Staphylococcus aureus A9763]
gi|257843545|gb|EEV67952.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9719]
gi|257849954|gb|EEV73912.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
A9299]
gi|257850284|gb|EEV74237.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
A8115]
gi|257853566|gb|EEV76525.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
A6300]
gi|257856988|gb|EEV79888.1| polynucleotide adenylyltransferase [Staphylococcus aureus A6224]
gi|257862974|gb|EEV85738.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
A5937]
gi|282590281|gb|EFB95361.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus
aureus A10102]
gi|282764950|gb|EFC05075.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A8117]
Length = 411
Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats.
Identities = 92/410 (22%), Positives = 162/410 (39%), Gaps = 26/410 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 73
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF + +I + A
Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSF-DIAMETFEAM 192
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+K LS ERI E+ KL+ N + H+ + F +++ ++Q++
Sbjct: 193 RTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNY-MPYFEQLDMNQINVTE 251
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ I S+ K I K L + + ++
Sbjct: 252 PIDLELLIAIVSV-----------KFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIIT 300
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPLFP 364
E K+F D +I + + + N + I + L + +
Sbjct: 301 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMM 360
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 361 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410
>gi|320140371|gb|EFW32227.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Staphylococcus aureus subsp. aureus MRSA131]
Length = 411
Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats.
Identities = 79/413 (19%), Positives = 157/413 (38%), Gaps = 32/413 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 73
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF +
Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSFDIATETFEAMR 193
Query: 191 IKAKKGLKILSSER-----IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----VQEI 241
I+ + + ++ N L ++ F+ + ++ + I
Sbjct: 194 IQMADIKFLSIERMVIELTKLMRGINVEKSFNHLKSLKAFNYMPYFEHLDMNQINVTEAI 253
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L+ L ++ + + + L + ++ + A + +E + ++
Sbjct: 254 DLELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIITKEQLKMFVYDYDT 313
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + + ++ K + G + +I L I + L + +
Sbjct: 314 HLIKNVMVAADVLKANDIQGHEPLIVNL----------------QTIDETLHRLPMHNRK 357
Query: 362 LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 358 DMMVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410
>gi|315129172|gb|EFT85167.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
CGS03]
Length = 400
Score = 179 bits (453), Expect = 8e-43, Method: Composition-based stats.
Identities = 92/410 (22%), Positives = 162/410 (39%), Gaps = 26/410 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF + +I + A
Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSF-DIAMETFEAM 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+K LS ERI E+ KL+ N + H+ + F +++ ++Q++
Sbjct: 182 RTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNY-MPYFEQLDMNQINVTE 240
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ I S+ K I K L + + ++
Sbjct: 241 PIDLELLIAIASV-----------KFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIIT 289
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPLFP 364
E K+F D +I + + + N + I + L + +
Sbjct: 290 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMM 349
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 350 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399
>gi|326793190|ref|YP_004311011.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium lentocellum DSM 5427]
gi|326543954|gb|ADZ85813.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium lentocellum DSM 5427]
Length = 455
Score = 179 bits (453), Expect = 8e-43, Method: Composition-based stats.
Identities = 99/439 (22%), Positives = 176/439 (40%), Gaps = 50/439 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I I+ ++ ++ IVGG VRD LMN D DI T+ P+ + RIF +
Sbjct: 11 KEAIQIIQMIEAVGYEAYIVGGCVRDLLMNRQPHDWDITTSAKPEEIKRIFK----RTYD 66
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ +I ++F++TT R + R KV F D D RRDFT+NA+
Sbjct: 67 TGIEHGTVTVILNTEHFEVTTYRIEGEYKDFRRPDKVSFVDDITLDLSRRDFTMNAIAYH 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+D G D++ + I+ + A R ED LRILR RF A G + I+++ L
Sbjct: 127 PDRGFVDPYEGQRDIKRQCIRSVRCAKERFTEDALRILRAVRFSAQLGFQ-IETETLKGI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L +S ERI E K+ + P + I +Y + + IF D + +
Sbjct: 186 EACRALLTHISKERIRDEFLKICVSSRPGH-IDLLYQLKLLEYIFPDFIKAYEIPQNHPH 244
Query: 251 EAEQVFEWKIDSL------------------------------LRFIVLISWQDKKSILS 280
V + + ++ + + ++
Sbjct: 245 HTYNVAKHTLVAMENSEPTVIVRLTMLLHDIGKVYTRTTDKHGIDHFYNHPKRSEQIASE 304
Query: 281 MAKKFSLPREIRYFLISFFNCN--FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
+ K + + + + +S +KK+ + G+++ LK+ A
Sbjct: 305 VLKDLRMDNHTIKAVCELIRYHDYHIEHHISKVYVKKVMMVIGEELFDELLKVQYADAMA 364
Query: 339 NLTHQDTCFI------LQVLSDIIHWKKP----LFPLTGDDVVKYGIPPGKKVGNILVHC 388
+ + ++II +P + +TG D+++ GIP GK +G++L
Sbjct: 365 QNLEKLQPKLDAIEKQRNYKNEIIANHEPYHKGMLAITGSDLIEIGIPKGKIIGDLLEAA 424
Query: 389 KQEWINSSFQLSQEDLHHL 407
Q+ I+ + L
Sbjct: 425 LQKVIHEPNFNQKALLLTY 443
>gi|253733296|ref|ZP_04867461.1| tRNA adenylyltransferase [Staphylococcus aureus subsp. aureus
TCH130]
gi|258451115|ref|ZP_05699150.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
A5948]
gi|282921703|ref|ZP_06329420.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9765]
gi|304380961|ref|ZP_07363619.1| polyA polymerase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|253728836|gb|EES97565.1| tRNA adenylyltransferase [Staphylococcus aureus subsp. aureus
TCH130]
gi|257861170|gb|EEV83983.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
A5948]
gi|282593965|gb|EFB98954.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9765]
gi|304340486|gb|EFM06422.1| polyA polymerase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|320142702|gb|EFW34505.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Staphylococcus aureus subsp. aureus MRSA177]
Length = 411
Score = 179 bits (453), Expect = 8e-43, Method: Composition-based stats.
Identities = 80/413 (19%), Positives = 159/413 (38%), Gaps = 32/413 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 73
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF +
Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSFDIATETFEAMR 193
Query: 191 IKAKKGL-----KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----VQEI 241
I+ +I+ + ++ N L ++ F+ + ++ + I
Sbjct: 194 IQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYMPYFEHLDMNQINVTEAI 253
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L+ L ++ + + + L + ++ + A + +E + ++
Sbjct: 254 DLELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIITKEQLKMFVYDYDT 313
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + + ++ K + G + +I L I + L + +
Sbjct: 314 HLIKNVMVAADVLKANDIQGHEPLIVNL----------------QTIDETLHRLPMHNRK 357
Query: 362 LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 358 DMMVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410
>gi|297563764|ref|YP_003682738.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296848212|gb|ADH70232.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 499
Score = 179 bits (453), Expect = 8e-43, Method: Composition-based stats.
Identities = 91/453 (20%), Positives = 167/453 (36%), Gaps = 56/453 (12%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
+ + +VGG VRD+L+ D+D+ T +P R++ + V I
Sbjct: 47 EELGERFAAHGQQLALVGGPVRDALLGRPANDVDLTTDAVPQRILELVDGWADSVWTVGI 106
Query: 76 SYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQG 133
+GT+ + + ++TT R R +V + D D LRRDFT+NA+
Sbjct: 107 DFGTVGLRKKGLQLEVTTYRSESYSPKSRKPEVAYGTDIHDDLLRRDFTVNAMAVRLPGL 166
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+ +D GGL DLR + ++ G +D LRI+R RF A G + + A+
Sbjct: 167 EFVDPFGGLADLRAKVLRTPGRPEDSFSDDPLRIMRAVRFAAQLGF-TLAPEVAEAARDM 225
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--------------- 238
L I+S+ER+ E+ KL+ + +P I M + GI + + ++
Sbjct: 226 ADRLSIVSAERVRDELTKLMLSPDPHRGIELMVDLGIARYVLPEIPKLRLEIDEHHRHKD 285
Query: 239 -QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI------------------- 278
E SL L Q IE E+ + D +LR L+ K
Sbjct: 286 VYEHSLTVLDQAIELEEKRGHEPDLVLRLAALLHDVGKPKTRAFESGGRVTFHHHEVVGA 345
Query: 279 ---LSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYLYGDKVMIAKLK 330
P+++ + + + + +++ G ++ +
Sbjct: 346 SMSRKRLTALRFPKDVVSDVSTLVELHLRFHGYGRGEWTDSAVRRYARDAGLQLERLHIL 405
Query: 331 IFLALHYNNLTHQ--------DTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKV 381
N D +++L++ + L G+++ + G+ PG V
Sbjct: 406 TRADCTTRNRRKAAALARSYDDIERRIELLAEQEELDRIRPDLDGNEIQEILGVKPGPVV 465
Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
G + + + + +E LR A
Sbjct: 466 GRAYRFLLELRLENG-PMGREAATEELRAWAAE 497
>gi|254852809|ref|ZP_05242157.1| polyA polymerase [Listeria monocytogenes FSL R2-503]
gi|300763785|ref|ZP_07073782.1| polyA polymerase [Listeria monocytogenes FSL N1-017]
gi|258606136|gb|EEW18744.1| polyA polymerase [Listeria monocytogenes FSL R2-503]
gi|300515521|gb|EFK42571.1| polyA polymerase [Listeria monocytogenes FSL N1-017]
Length = 393
Score = 179 bits (453), Expect = 9e-43, Method: Composition-based stats.
Identities = 82/397 (20%), Positives = 155/397 (39%), Gaps = 19/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N + D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRMISDVDIATSAFPEEVKEIFQ----TSYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ + +++++TT R++ R ++V F R + D RRDFT+NA+ D+
Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEH 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D G ++N+ IK +G A R ED LR++R RF + + +
Sbjct: 124 FALQDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQLDFELDKETEKALESQ 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ I + + + L ++ +L + +
Sbjct: 184 IELLQHTSVERITVEWIKMMKGKAAKRAIELLLKVKMETYLPGLKDEKSALSEFASWDWE 243
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ E I L V ++ + K + LP + + + N K
Sbjct: 244 KRTTEESIWLGLVVAVK-----PNNVNAFLKAWKLPNKTIQLVNKAYQYALNMK---ETW 295
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + Y G V ++ + N H+ + Q + K +TG D++K
Sbjct: 296 LTEELYHAGKAVFSLVNELNVIRGQENNQHK----VSQAYEALPIHSKKDLAITGADLLK 351
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G G V L + +++ + + L
Sbjct: 352 WSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWL 388
>gi|257425523|ref|ZP_05601948.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257428182|ref|ZP_05604580.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257430812|ref|ZP_05607194.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
subsp. aureus 68-397]
gi|257433570|ref|ZP_05609928.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
subsp. aureus E1410]
gi|257436412|ref|ZP_05612459.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
subsp. aureus M876]
gi|282904040|ref|ZP_06311928.1| polyA polymerase [Staphylococcus aureus subsp. aureus C160]
gi|282905805|ref|ZP_06313660.1| tRNA nucleotidyltransferase CCA-adding enzyme [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282908775|ref|ZP_06316593.1| polynucleotide adenylyltransferase protein [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282911036|ref|ZP_06318838.1| polynucleotide adenylyltransferase protein [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914248|ref|ZP_06322035.1| polyA polymerase [Staphylococcus aureus subsp. aureus M899]
gi|282919171|ref|ZP_06326906.1| tRNA nucleotidyltransferase [Staphylococcus aureus subsp. aureus
C427]
gi|282924355|ref|ZP_06332029.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus
aureus subsp. aureus C101]
gi|283958222|ref|ZP_06375673.1| polyA polymerase [Staphylococcus aureus subsp. aureus A017934/97]
gi|293501274|ref|ZP_06667125.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
58-424]
gi|293510235|ref|ZP_06668943.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus
aureus subsp. aureus M809]
gi|293526830|ref|ZP_06671514.1| polyA polymerase [Staphylococcus aureus subsp. aureus M1015]
gi|297591063|ref|ZP_06949701.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp.
aureus MN8]
gi|257271980|gb|EEV04118.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257275023|gb|EEV06510.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257278940|gb|EEV09559.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
subsp. aureus 68-397]
gi|257281663|gb|EEV11800.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
subsp. aureus E1410]
gi|257284694|gb|EEV14814.1| polynucleotide adenylyltransferase region [Staphylococcus aureus
subsp. aureus M876]
gi|282313742|gb|EFB44135.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus
aureus subsp. aureus C101]
gi|282316981|gb|EFB47355.1| tRNA nucleotidyltransferase [Staphylococcus aureus subsp. aureus
C427]
gi|282322316|gb|EFB52640.1| polyA polymerase [Staphylococcus aureus subsp. aureus M899]
gi|282324731|gb|EFB55041.1| polynucleotide adenylyltransferase protein [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327039|gb|EFB57334.1| polynucleotide adenylyltransferase protein [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282331097|gb|EFB60611.1| tRNA nucleotidyltransferase CCA-adding enzyme [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282595658|gb|EFC00622.1| polyA polymerase [Staphylococcus aureus subsp. aureus C160]
gi|283790371|gb|EFC29188.1| polyA polymerase [Staphylococcus aureus subsp. aureus A017934/97]
gi|290920388|gb|EFD97452.1| polyA polymerase [Staphylococcus aureus subsp. aureus M1015]
gi|291096279|gb|EFE26540.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
58-424]
gi|291467179|gb|EFF09697.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus
aureus subsp. aureus M809]
gi|297575949|gb|EFH94665.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp.
aureus MN8]
gi|312438138|gb|ADQ77209.1| polyA polymerase family protein [Staphylococcus aureus subsp.
aureus TCH60]
Length = 411
Score = 179 bits (453), Expect = 9e-43, Method: Composition-based stats.
Identities = 92/410 (22%), Positives = 162/410 (39%), Gaps = 26/410 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 73
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A
Sbjct: 134 TANKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSF-DIATETFEAM 192
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+K LS ERI E+ KL+ N + H+ + F + + ++Q++
Sbjct: 193 RTQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNY-MPYFEHLDMNQINVTE 251
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ I S+ K I K L + + ++
Sbjct: 252 PIDLELLIAIVSV-----------KFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIIT 300
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPLFP 364
E K+F D +I + + + N + I + L + +
Sbjct: 301 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMM 360
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 361 VNGGVLMAHLNAKSGPWLKDLLRQIEIAIVTGKVSNEETEILKWVDNHVK 410
>gi|253732099|ref|ZP_04866264.1| tRNA adenylyltransferase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253724146|gb|EES92875.1| tRNA adenylyltransferase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
Length = 411
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 92/410 (22%), Positives = 162/410 (39%), Gaps = 26/410 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 18 EQARPILEQIQDTGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 73
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A
Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSF-DIATETFEAM 192
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+K LS ERI E+ KL+ N + H+ + F + + ++Q++
Sbjct: 193 RTQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNY-MPYFEHLDMNQINVTE 251
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ I S+ K I K L + + ++
Sbjct: 252 AIDLELLIAIASV-----------KFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIIT 300
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPLFP 364
E K+F D +I + + + N + I + L + +
Sbjct: 301 KEQLKMFVYDYDTHLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMM 360
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 361 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410
>gi|15924447|ref|NP_371981.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927038|ref|NP_374571.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
N315]
gi|156979776|ref|YP_001442035.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
Mu3]
gi|162036297|ref|YP_001246886.2| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
JH9]
gi|162077203|ref|YP_001316681.2| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
JH1]
gi|253315966|ref|ZP_04839179.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|255006244|ref|ZP_05144845.2| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|269203082|ref|YP_003282351.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
ED98]
gi|295407207|ref|ZP_06817007.1| tRNA nucleotidyltransferase [Staphylococcus aureus A8819]
gi|296275345|ref|ZP_06857852.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
MR1]
gi|297244631|ref|ZP_06928514.1| CCA-adding enzyme [Staphylococcus aureus A8796]
gi|73619851|sp|Q99U32|CCA_STAAM RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|73619853|sp|Q7A5K2|CCA_STAAN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|166233880|sp|A7X2F4|CCA_STAA1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|13701255|dbj|BAB42550.1| SA1290 [Staphylococcus aureus subsp. aureus N315]
gi|14247228|dbj|BAB57619.1| putative poly(A) polymerase [Staphylococcus aureus subsp. aureus
Mu50]
gi|156721911|dbj|BAF78328.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
gi|262075372|gb|ACY11345.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
ED98]
gi|285817137|gb|ADC37624.1| tRNA nucleotidyltransferase [Staphylococcus aureus 04-02981]
gi|294967920|gb|EFG43949.1| tRNA nucleotidyltransferase [Staphylococcus aureus A8819]
gi|297178661|gb|EFH37907.1| CCA-adding enzyme [Staphylococcus aureus A8796]
gi|312829849|emb|CBX34691.1| poly A polymerase head domain protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|329727606|gb|EGG64062.1| tRNA adenylyltransferase [Staphylococcus aureus subsp. aureus
21172]
gi|329731308|gb|EGG67674.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Staphylococcus aureus subsp. aureus 21193]
Length = 400
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 92/410 (22%), Positives = 162/410 (39%), Gaps = 26/410 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF + +I + A
Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSF-DIAMETFEAM 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+K LS ERI E+ KL+ N + H+ + F +++ ++Q++
Sbjct: 182 RTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNY-MPYFEQLDMNQINVTE 240
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ I S+ K I K L + + ++
Sbjct: 241 PIDLELLIAIVSV-----------KFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIIT 289
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPLFP 364
E K+F D +I + + + N + I + L + +
Sbjct: 290 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMM 349
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 350 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399
>gi|291295024|ref|YP_003506422.1| Polynucleotide adenylyltransferase region [Meiothermus ruber DSM
1279]
gi|290469983|gb|ADD27402.1| Polynucleotide adenylyltransferase region [Meiothermus ruber DSM
1279]
Length = 427
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 92/406 (22%), Positives = 160/406 (39%), Gaps = 37/406 (9%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+ + +D+D AT+ P+ VMR+ + IPT + +GT+ I+
Sbjct: 17 LYLVGGAVRDILLGETPEDLDFATSAPPEVVMRLAKAQGLEAIPTGLEHGTVTILIDHHP 76
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148
+++TT R D+ T GR A+V + + + D RRDFTI A+ D G+VID GG DL
Sbjct: 77 YEVTTFRRDVETYGRKARVAWGQSIEEDLARRDFTIGAIAMDAAGRVIDPYGGQQDLEAG 136
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208
++ +GD R EDYLR++R RF A YG + A A + L ++ ER+ +E
Sbjct: 137 VLRAVGDPAQRFREDYLRVIRAGRFAARYGFEIEPRTLQAARAAAPEVLSHVAIERVTAE 196
Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI-------D 261
+K + P + ++Y+ I + + + ++ L + E +
Sbjct: 197 FDKAFQNGTPSRFLRYLYDLEILQRLIPEFEDTHLLLQNPRWHPEGDVLTHVLQVVDRAP 256
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLP----------------------REIRYFLISFF 299
R+ L+ KK + +R L+
Sbjct: 257 PPYRWHALLHDIGKKDTARWRPEGWYSFYGHERVGAGLIPRIARDLRLPNHLRDELVVTT 316
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ + + L+ +++
Sbjct: 317 ALHMVPVFTKPTPAAIRKFQAQAGPHLPALRALYEADGAGRRSKES------WKFFEPQP 370
Query: 360 KPLFPL-TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
P+ P+ G +++ G PGK +L ++S + E L
Sbjct: 371 VPVQPVLLGRHLIERGHKPGKVFSRMLKAAYDWQLDSG-ETDIEAL 415
>gi|50843738|ref|YP_056965.1| putative RNA nucleotidyltransferase [Propionibacterium acnes
KPA171202]
gi|50841340|gb|AAT84007.1| putative RNA nucleotidyltransferase [Propionibacterium acnes
KPA171202]
Length = 507
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 83/460 (18%), Positives = 153/460 (33%), Gaps = 59/460 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + + + + +VGG+VRD+LM D+D T PD I
Sbjct: 43 INALFEQIPLVAELGEAFAQAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILR 102
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+ + ++GTI + TT R+D D R ++V+ K D +RRDFT
Sbjct: 103 QHTHATWDIGRAFGTIGAQIDDWVVEATTYRADAYHPDSRKPEIVYGETLKDDLIRRDFT 162
Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + D GL D+ + ++ +D LR++R RF + G +
Sbjct: 163 VNAMALHAATRTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLGF-TV 221
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
++ A ++I+S+ER+ E++K L +P + + I + ++
Sbjct: 222 TNEVRAAMTDMASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALR 281
Query: 239 ------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK---------- 276
E SL L Q I+ E+ D R L+ K
Sbjct: 282 LERDEHHRHKDVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGK 341
Query: 277 ------------SILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYL 319
K + P ++ + + + +++
Sbjct: 342 VSFHHHDIVGAKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRD 401
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDD 369
GD+ + +L I + + D+ L G
Sbjct: 402 AGDQ--LERLHILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQ 459
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ GI PG +VG ++ E + LL
Sbjct: 460 IMAILGIKPGPEVGKAYKFLLNLRLDEGPHTPDEAKNALL 499
>gi|21283076|ref|NP_646164.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
MW2]
gi|49486297|ref|YP_043518.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
MSSA476]
gi|73619859|sp|Q6G9A5|CCA_STAAS RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|73619861|sp|Q8NWP0|CCA_STAAW RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|21204516|dbj|BAB95212.1| MW1347 [Staphylococcus aureus subsp. aureus MW2]
gi|49244740|emb|CAG43176.1| poly A polymerase family protein [Staphylococcus aureus subsp.
aureus MSSA476]
Length = 400
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 80/413 (19%), Positives = 159/413 (38%), Gaps = 32/413 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF +
Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSFDIATETFEAMR 182
Query: 191 IKAKKGL-----KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----VQEI 241
I+ +I+ + ++ N L ++ F+ + ++ + I
Sbjct: 183 IQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYMPYFEHLDMNQINVTEAI 242
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L+ L ++ + + + L + ++ + A + +E + ++
Sbjct: 243 DLELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIITKEQLKMFVYDYDT 302
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + + ++ K + G + +I L I + L + +
Sbjct: 303 HLIKNVMVAADVIKANDIQGHEPLIVNL----------------QTIDETLHRLPMHNRK 346
Query: 362 LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 347 DMMVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399
>gi|198422855|ref|XP_002122885.1| PREDICTED: similar to tRNA nucleotidyl transferase, CCA-adding, 1
[Ciona intestinalis]
Length = 488
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 112/404 (27%), Positives = 187/404 (46%), Gaps = 16/404 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + L K + GGAVRD L+ + D+D+ATT P ++ +F K +
Sbjct: 88 LFTDEFRFVQHLFEKENHELRFCGGAVRDLLLGKAPHDLDLATTATPTEMIEMFRKNDVR 147
Query: 70 VI-PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I S+GT+ ++ F+ITTLR D +TDGR A V +T+DW D+ RRD T N+L+
Sbjct: 148 LICENGWSHGTVTCRVEEQNFEITTLRIDRVTDGRRALVEYTKDWYLDASRRDLTCNSLF 207
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDG 186
G VIDY G++D++++ ++F+GD RI EDYLRILR+FRFF E+ D
Sbjct: 208 LTMSGNVIDYFNGISDVKDKKVRFVGDPALRIQEDYLRILRYFRFFGRLKEEPAIPDEST 267
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L K GL ++ ER W E +L + + + MY GI K++ L +++ L++
Sbjct: 268 LQEITKYGSGLGGVAGERKWVEFTMILNGRLLVLIMKMMYRCGILKQLGLP-EQVDLEEF 326
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
V + F +LL I+ + + ++ + ++
Sbjct: 327 ENVYNRSKHFSPNHMTLLTSILKDKTDLDHFMSVIKCSRYEYNVAKFIIEHRALYRPDKD 386
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+S+ + DK ++ + ++ H+ P FPL
Sbjct: 387 MISVYVDLLVDSYKQDKNLVNVFMELMKYIGQA----------DIMDYFTHFNIPTFPLK 436
Query: 367 GDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + + +G+ GK VG + Q+W S ++L E L L+
Sbjct: 437 GGILKERFGMK-GKPVGIAINFAFQKWKESRYKLDSEALLQLIE 479
>gi|329943259|ref|ZP_08292033.1| poly A polymerase head domain protein [Chlamydophila psittaci
Cal10]
gi|332287838|ref|YP_004422739.1| poly A polymerase [Chlamydophila psittaci 6BC]
gi|313848410|emb|CBY17414.1| putative poly A polymerase [Chlamydophila psittaci RD1]
gi|325506735|gb|ADZ18373.1| poly A polymerase [Chlamydophila psittaci 6BC]
gi|328814806|gb|EGF84796.1| poly A polymerase head domain protein [Chlamydophila psittaci
Cal10]
gi|328915099|gb|AEB55932.1| polynucleotide adenylyltransferase [Chlamydophila psittaci 6BC]
Length = 410
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 107/417 (25%), Positives = 170/417 (40%), Gaps = 19/417 (4%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M +I IL L ++ VGG VRD LM +++IDIAT+ P V
Sbjct: 1 MTTIALEA------AKKILLKLRNAGYQAYFVGGCVRDMLMGKPIEEIDIATSAPPVIVS 54
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLR 119
IF + ++G I + + F++ T RSD DGR+ + V K D+LR
Sbjct: 55 TIFPD----TLALGAAFGIIVVKENNRLFEVATFRSDENYQDGRHPERVIFSSMKEDALR 110
Query: 120 RDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN +Y D + D V G DL R I+ IG R ED LRILR RF + G
Sbjct: 111 RDFTINGMYYDPFEEKLFDLVEGRRDLEKRVIRAIGHPKLRFSEDKLRILRAIRFSSSLG 170
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ +A + +S ERIW E+ K+L+ P A+ + I IF ++
Sbjct: 171 FTLDPATERAIIKEAPSLVCSVSPERIWQELKKMLKKN-PYEALSLLIRLKIITVIFPEL 229
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
++I L IE + + F++ + + +A LI
Sbjct: 230 RDIPPSLLRTSIEFAKRLNPLDFPEICFLLPLFQGVSEEAACVAFTRLRVSNKDLKLIQL 289
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD---- 354
+ Q + L +F A + Q+ +Q L +
Sbjct: 290 WYQALPQFQNVSNNRVFWAHFLASPTANLFLSLFSATQKDPSKQQNFIARVQELEERLEQ 349
Query: 355 -IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
I+ K ++ D++ GI PG+ +G++L + I + +E + LL++
Sbjct: 350 FIVRIKTASPLVSAPDLISRGIAPGRLLGDLLKEAETLSIENECH-DKEKILTLLKE 405
>gi|228476094|ref|ZP_04060802.1| cca-adding enzyme [Staphylococcus hominis SK119]
gi|314936408|ref|ZP_07843755.1| polyA polymerase [Staphylococcus hominis subsp. hominis C80]
gi|228269917|gb|EEK11397.1| cca-adding enzyme [Staphylococcus hominis SK119]
gi|313655027|gb|EFS18772.1| polyA polymerase [Staphylococcus hominis subsp. hominis C80]
Length = 400
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 86/408 (21%), Positives = 169/408 (41%), Gaps = 32/408 (7%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL+ + K ++ VGGAVRD +M+ ++ DIDI T+ +PD + IF IP
Sbjct: 9 ALPILNQIEKHHFEAYFVGGAVRDYIMHRTIHDIDITTSAMPDEIEDIFEH----TIPIG 64
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GTI ++ + +++TT R D + R ++V F R+ D RRDFTINA+ D+
Sbjct: 65 KEHGTINVVFNNENYEVTTFRSEGDYLDHRRPSEVNFVRNLYEDVQRRDFTINAIAMDKN 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA--- 189
K+ DY GG D++++ I+ +G+ R ED LRI+R RF +
Sbjct: 125 YKIFDYFGGQKDIQSKLIRTVGNPSERFKEDALRIIRGLRFQSQLTFDIHTETFEAMQLT 184
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
K I ++ N + I LD+ + +++ +
Sbjct: 185 CSDVKYLSIERIVVEFKKLILGSNVKQSYHNLLSLKIFNYIPFFNELDMTCVYINEPLEF 244
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ + K ++L K+ + + + + ++ ++
Sbjct: 245 EQWLAILLIKNNNL----------------PSLKQLKISNKEKSDIHTYIAIIETLPQIT 288
Query: 310 IPEIKK-LFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLF 363
+ K Y Y D ++ L I+ L N + ++ I QV+ + ++
Sbjct: 289 TKDALKLFVYDYSDYYILKVLNIYSVLQNNQIPTASELIINSLSIKQVVQHLQLHERKEM 348
Query: 364 PLTGDDVVKYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ G D++ + G + N+L + + + ++E++ + +
Sbjct: 349 DVNGKDLLAHFNKNGGPWLKNVLREIECAIVTDKIKNNKEEILKWVNE 396
>gi|139436923|ref|ZP_01771083.1| Hypothetical protein COLAER_00056 [Collinsella aerofaciens ATCC
25986]
gi|133776570|gb|EBA40390.1| Hypothetical protein COLAER_00056 [Collinsella aerofaciens ATCC
25986]
Length = 464
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 82/450 (18%), Positives = 155/450 (34%), Gaps = 59/450 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +L L ++ VGG VRD+LM D+D+ + L V+
Sbjct: 12 SDASLRVLRALEAAGLEAWYVGGWVRDALMGYPSHDVDMCCSGLWQESKAALEAAGIAVV 71
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYA 129
+ I +G I I + ++TT R D TDGR+ + V + D RRDFT+NA+
Sbjct: 72 ESGIKFGGITAISDGERIEVTTYRLDGFYTDGRHPQSVERAASLEDDLARRDFTVNAMAW 131
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ ++D G DL + I+ +GD R ED LR+LR RF I+ + A
Sbjct: 132 HPERGLVDRYDGQGDLERKLIRAVGDPKRRFNEDALRMLRAVRFACRLDFM-IEPETKRA 190
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ L ++ ER+ E+ +L + +A+ + + ++ V
Sbjct: 191 LAECAPLLDAVARERVGIELEGILSTGHGGDAM--LRYPELICASVPELAAGRGFDQRSV 248
Query: 250 IEAEQVFEW-----------------KIDSLLRFIVLISWQDKKSILSMAK--------- 283
A V+E S L + + K ++
Sbjct: 249 YHAFNVYEHIARVLTVAGELALCDGVAPSSSLMWAAFLHDVSKPECFTVDHAGSGHFYGH 308
Query: 284 -------------KFSLPREIRYFLISFFNCN---FNQKTLSIPEIKKLFYLYGDKVMIA 327
+ +L ++ + + + + + + G
Sbjct: 309 PELGAKKARVIMDRLALSHDLVRDVCLLIKYHDKPLRPERSCLLNMMRALSGEGVDTARL 368
Query: 328 KLKIFLALHYNNLTHQDTCFI------------LQVLSDIIHWKKPLFPLTGDDVVKYGI 375
++ + L +CF ++L + + + G D+++ G+
Sbjct: 369 IDELMDLKRADTLGKAPSCFYYVETIEEMRALAHELLKAGEPYTLKMLAINGGDLIRAGV 428
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
PG ++G +L I +E L
Sbjct: 429 KPGPELGQLLNSALDAVIEDDIPNEREALL 458
>gi|46908138|ref|YP_014527.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes serotype 4b str.
F2365]
gi|254992071|ref|ZP_05274261.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL J2-064]
gi|73619794|sp|Q71YB0|CCA_LISMF RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|46881408|gb|AAT04704.1| polyA polymerase [Listeria monocytogenes serotype 4b str. F2365]
Length = 393
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 80/397 (20%), Positives = 155/397 (39%), Gaps = 19/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQ----TSYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ + +++++TT R++ R ++V F R + D RRDFT+NA+ D+
Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEH 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D G ++N+ IK +G A R ED LR++R RF + + +
Sbjct: 124 FALQDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQLDFELDKETEKALESQ 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + + + + L ++ +L + +
Sbjct: 184 IELLQHTSVERITVEWLKMMKGKAAKRAIELLLKVKMETYLPGLKDEKSALSEFASWDWE 243
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ E I L V ++ + K + LP + + + K + +
Sbjct: 244 KRTTEESIWLGLVVAVK-----PNNVNAFLKAWKLPNKTIQLVNKAYQDALKMKETWLKD 298
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
Y G V ++ + N H+ + Q + K +TG D++K
Sbjct: 299 ---ELYHAGKAVFSLVNELNVIRGKENNQHK----VSQAYEALPIHSKKDLAITGADLLK 351
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G G V L + +++ + + L
Sbjct: 352 WSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWL 388
>gi|57650412|ref|YP_186341.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
COL]
gi|151221580|ref|YP_001332402.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161353526|ref|YP_499992.2| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|161509625|ref|YP_001575284.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|162138558|ref|YP_494045.2| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|262048981|ref|ZP_06021860.1| hypothetical protein SAD30_1259 [Staphylococcus aureus D30]
gi|284024456|ref|ZP_06378854.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
132]
gi|294848421|ref|ZP_06789167.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9754]
gi|73619848|sp|Q5HFW6|CCA_STAAC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|172048887|sp|A6QH08|CCA_STAAE RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|189081881|sp|A8Z437|CCA_STAAT RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|57284598|gb|AAW36692.1| polyA polymerase [Staphylococcus aureus subsp. aureus COL]
gi|150374380|dbj|BAF67640.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368434|gb|ABX29405.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|259162913|gb|EEW47476.1| hypothetical protein SAD30_1259 [Staphylococcus aureus D30]
gi|269940950|emb|CBI49334.1| poly A polymerase family protein [Staphylococcus aureus subsp.
aureus TW20]
gi|294824447|gb|EFG40870.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9754]
gi|302751288|gb|ADL65465.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|315197797|gb|EFU28131.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
CGS01]
gi|329314134|gb|AEB88547.1| CCA-adding enzyme [Staphylococcus aureus subsp. aureus T0131]
gi|329723189|gb|EGG59720.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Staphylococcus aureus subsp. aureus 21189]
Length = 400
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 80/413 (19%), Positives = 159/413 (38%), Gaps = 32/413 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF +
Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSFDIATETFEAMR 182
Query: 191 IKAKKGL-----KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----VQEI 241
I+ +I+ + ++ N L ++ F+ + ++ + I
Sbjct: 183 IQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYMPYFEHLDMNQINVTEAI 242
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L+ L ++ + + + L + ++ + A + +E + ++
Sbjct: 243 DLELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIITKEQLKMFVYDYDT 302
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + + ++ K + G + +I L I + L + +
Sbjct: 303 HLIKNVMVAADVLKANDIQGHEPLIVNL----------------QTIDETLHRLPMHNRK 346
Query: 362 LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 347 DMMVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399
>gi|49483646|ref|YP_040870.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
MRSA252]
gi|295427967|ref|ZP_06820599.1| tRNA nucleotidyltransferase [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|73619857|sp|Q6GGV2|CCA_STAAR RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|49241775|emb|CAG40466.1| poly A polymerase family protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|295128325|gb|EFG57959.1| tRNA nucleotidyltransferase [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|315195355|gb|EFU25742.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
CGS00]
Length = 400
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 92/410 (22%), Positives = 162/410 (39%), Gaps = 26/410 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A
Sbjct: 123 TANKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSF-DIATETFEAM 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+K LS ERI E+ KL+ N + H+ + F + + ++Q++
Sbjct: 182 RTQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNY-MPYFEHLDMNQINVTE 240
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ I S+ K I K L + + ++
Sbjct: 241 PIDLELLIAIVSV-----------KFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIIT 289
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPLFP 364
E K+F D +I + + + N + I + L + +
Sbjct: 290 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMM 349
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 350 VNGGVLMAHLNAKSGPWLKDLLRQIEIAIVTGKVSNEETEILKWVDNHVK 399
>gi|283770530|ref|ZP_06343422.1| CCA-adding enzyme [Staphylococcus aureus subsp. aureus H19]
gi|283460677|gb|EFC07767.1| CCA-adding enzyme [Staphylococcus aureus subsp. aureus H19]
Length = 411
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 92/410 (22%), Positives = 162/410 (39%), Gaps = 26/410 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 73
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A
Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSF-DIATETFEAM 192
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+K LS ERI E+ KL+ N + H+ + F + + ++Q++
Sbjct: 193 CTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNY-MPYFEHLDMNQINVTE 251
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ I S+ K I K L + + ++
Sbjct: 252 PIDLELLIAIVSV-----------KFDINYSLKPLKLSNRQAKDINQYIQIMNALPSIIT 300
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPLFP 364
E K+F D +I + + + N + I + L + +
Sbjct: 301 KEQLKMFVYDYDTNLIKNVMVAANVLKANDIQGHEPLIVNLQTIDETLHCLPMHNRKDMM 360
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 361 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410
>gi|282916724|ref|ZP_06324482.1| CCA-adding enzyme [Staphylococcus aureus subsp. aureus D139]
gi|282319211|gb|EFB49563.1| CCA-adding enzyme [Staphylococcus aureus subsp. aureus D139]
Length = 411
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 92/410 (22%), Positives = 162/410 (39%), Gaps = 26/410 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 73
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A
Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSF-DIATETFEAM 192
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+K LS ERI E+ KL+ N + H+ + F + + ++Q++
Sbjct: 193 CTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNY-MPYFEHLDMNQINVTE 251
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ I S+ K I K L + + ++
Sbjct: 252 PIDLELLIAIVSV-----------KFDINYSLKPLKLSNRQAKDINQYIQIMNALPSIIT 300
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPLFP 364
E K+F D +I + + + N + I + L + +
Sbjct: 301 KEQLKIFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHCLPMHNRKDMM 360
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 361 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410
>gi|313829124|gb|EFS66838.1| tRNA adenylyltransferase [Propionibacterium acnes HL063PA2]
gi|315109748|gb|EFT81724.1| tRNA adenylyltransferase [Propionibacterium acnes HL030PA2]
Length = 492
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 81/460 (17%), Positives = 154/460 (33%), Gaps = 59/460 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + + + + + +VGG+VRD+LM D+D T PD+ +
Sbjct: 28 IDTLFEQLPLVGRLGQAFQEAGHELHLVGGSVRDALMGTLGHDLDFTTDATPDQTEAVLR 87
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+ ++GTI ++TT R+D D R + + + D +RRDFT
Sbjct: 88 TLTHATWDIGRAFGTIGARIDDWVVEVTTFRTDAYQPDSRKPVIAYGETLEEDLVRRDFT 147
Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + + D GL D+ ++ +D LR++R RF + G +
Sbjct: 148 VNAMALNAATREFHDPHAGLADIVAGKLRTPFPPERSFSDDPLRMMRAARFTSQLGF-TV 206
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ A + I+S+ER+ E+++ L +P + + GI + ++
Sbjct: 207 TDEVRAAMTDMAGRISIISAERVRDELSRTLLTDHPRAGLDLLVTTGIADHVLPELPALR 266
Query: 239 ------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----- 281
E SL L Q I+ E+ + D R L+ K +
Sbjct: 267 LERDEHHRHKDVYEHSLTVLDQSIDLERRRGHEPDLTGRLAALLHDVGKPATRRFEPGGK 326
Query: 282 -----------------AKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYL 319
K + P +I + + + +++
Sbjct: 327 VSFHHHDVVGAKLVRKRLKALAYPSQIVKDVSKLVELHLRFHGYGDQGWTDSAVRRYVRD 386
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDD 369
GD+ + +L I + + D+ L G
Sbjct: 387 AGDQ--LERLHILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAVRPDLDGQQ 444
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ GI PG +VG ++ E + LL
Sbjct: 445 IMAILGIKPGPEVGKAYKFLLNLRLDEGPHTPDEAKNALL 484
>gi|310642529|ref|YP_003947287.1| polynucleotide adenylyltransferase region [Paenibacillus polymyxa
SC2]
gi|309247479|gb|ADO57046.1| Polynucleotide adenylyltransferase region [Paenibacillus polymyxa
SC2]
Length = 440
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 87/427 (20%), Positives = 173/427 (40%), Gaps = 33/427 (7%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
+++ L ++ VGG VRD L+ ++ D+D+ T+ P+ V+ +F VIPT I
Sbjct: 18 RDVIHTLTTAGHEAYWVGGCVRDELLGRAIHDMDLTTSAEPEEVLALFPH----VIPTGI 73
Query: 76 SYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+GT+ ++ F++TT R++ R +V F +D + D +RRDFT+NA+ + G
Sbjct: 74 QHGTVTVMQDGHAFEVTTFRTESGYTDHRRPTEVSFVKDIREDLMRRDFTMNAIAMAEHG 133
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+ +D GG DLR ++ +G A R ED LR+LR RF + + + I+
Sbjct: 134 ERVDPFGGEADLRAALVRCVGRAEERFEEDGLRMLRCIRFAS-VFRFRVAYNTWKGMIRR 192
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN-----GGIFKEIFLDVQEISLDQLSQ 248
++GL+ ++ ER+ E+ K+L +PL + + + +L ++ Q
Sbjct: 193 REGLRHIAMERVRVELEKMLAGPDPLRGLEMLGRSGLLGCTKVPVPWEQCDAQALKEILQ 252
Query: 249 V---------IEAEQVFEWKIDSLLRFIVLISW--QDKKSILSMAKKFSLPREIRYFLIS 297
+ + + ++ D LLR + +L +
Sbjct: 253 LPAELRWGLLLMSCRLSSEAADELLRAWTFSNAVRLRLVHLLEWETELISHAVAIADNSI 312
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL--HYNNLTHQDTCFILQVLSDI 355
+ + + +L G L++ L + L + ++
Sbjct: 313 SRDSDPINDEVLRRNWIRLLIKLGKDTASDWLELHKTLPSSFRGLPPWVEKHVKKIAELA 372
Query: 356 IHW-------KKPLFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
W + +TG+++ P G +G ++ Q E L
Sbjct: 373 NSWTQQAVVVRIKDLNITGNELVQAMNRPGGPWLGQMMERLLQAVACGDIPNETETLLQE 432
Query: 408 LRKLIAS 414
++++++S
Sbjct: 433 VKRVMSS 439
>gi|118471508|ref|YP_891120.1| tRNA adenylyltransferase [Mycobacterium smegmatis str. MC2 155]
gi|118172795|gb|ABK73691.1| tRNA adenylyltransferase [Mycobacterium smegmatis str. MC2 155]
Length = 480
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 86/451 (19%), Positives = 172/451 (38%), Gaps = 57/451 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L + ++ + +VGG+VRD+L+ D+D T P+++ + +
Sbjct: 25 LRELGAVFAAAGHELYLVGGSVRDALLGRLTENSDLDFTTDARPEQMQKFLRGWSDALWD 84
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
T I +GTI + +ITT R+D R V F + D +RRDFTINA+
Sbjct: 85 TGIEFGTIGVGKGDDRLEITTFRADSYDQVSRNPTVEFGDNLGDDLVRRDFTINAMAVRI 144
Query: 132 Q----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
G+ D +GGL R++ + +D LR+LR RF + G ++ L
Sbjct: 145 TADGPGEFHDPLGGLAAARDKVLDTPSAPEVSFGDDPLRMLRAARFVSQLGF-SVAPRVL 203
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--------- 238
A I+ L+ +++ER+ +E++KLL +P+ I M G+ + +V
Sbjct: 204 EALIEMAPQLERITAERVAAELDKLLLGADPVAGIDLMVQTGMGAVVLPEVGEMRMAIDE 263
Query: 239 ----QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------- 281
+++ L+ + +A + + D +LR+ L+ K +
Sbjct: 264 HHQHKDVYWHSLTVLRQAIDLEDDGPDLVLRWAALLHDIGKPATRKHEPDGGVSFHHHEV 323
Query: 282 ---------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKL 329
+ +++ + + + Y+ ++++L
Sbjct: 324 VGAKMVRKRMRALKYSKQMVEDVSQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGPLLSRL 383
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPG 378
+ + + D+ ++ L G+++++ GIPPG
Sbjct: 384 HKLVRADCTTRNKRRAARLRANYDDLEARIAELAAKEDLQRVRPDLDGNEIMQILGIPPG 443
Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+VG + K+ + E + LL+
Sbjct: 444 PQVGEAWKYLKELRLERGPLSHDEAVDELLK 474
>gi|269839869|ref|YP_003324562.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermobaculum terrenum ATCC BAA-798]
gi|269791599|gb|ACZ43739.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermobaculum terrenum ATCC BAA-798]
Length = 484
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 92/442 (20%), Positives = 172/442 (38%), Gaps = 47/442 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVIPT 73
+ + + + VGG VRDSL+ VQ++D AT+ P+ + R+ + R V
Sbjct: 24 VYRLHKQFTEAGHELYAVGGCVRDSLLGKEVQELDFATSAHPEEIKRLLAPLRPDSVYTV 83
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-Q 131
+GTI I +ITT R + + R +V F + D RRDFT+NA+ D
Sbjct: 84 GERFGTIGAIFGPYRVEITTYRGEWYSPDSRKPEVTFGISLEEDLSRRDFTVNAIAMDIP 143
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G++ID GG+ DL ++ I+ +GD R +D LR++R RF A+ G I+ A
Sbjct: 144 SGRLIDPFGGVEDLHSKVIRAVGDPDARFRDDPLRLMRAVRFAANLGF-KIEPRTAEAIR 202
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + +S ER+ E+ ++L P AI + + G+ + I +V E+
Sbjct: 203 RHAAQICKISIERVRDELTRMLTGPAPDVAIAALVDLGLMQYIVPEVVELKQVSTGGGKH 262
Query: 252 AEQVFE-------WKIDSLLRFIVLISW---------------------QDKKSILSMAK 283
+ D ++R+ L+ K +
Sbjct: 263 KDIFIHTLKVVRNTPPDLVIRWAALLHDIAKPRTFGIRDGKVHFDHHETIGAKMAEEILS 322
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH- 342
+ R+ + + + + +L+ LAL ++T
Sbjct: 323 RLHYDRQTIEAVAKVVRMHTQANSYDPEVWTDGAVRRLVREAGDELEPLLALSQADITSY 382
Query: 343 ------------QDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCK 389
++ +Q L + ++ PL G+D+++ +G PG + + +
Sbjct: 383 RRQKVEAGVQRVRELRERIQRLEEEAAIRELRPPLDGNDLMRIFGRGPGPWIKPLKNYLL 442
Query: 390 QEWINSSF-QLSQEDLHHLLRK 410
I+ ++ L+R+
Sbjct: 443 DLVIDGQLAPDDRQTAERLVRE 464
>gi|269129150|ref|YP_003302520.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermomonospora curvata DSM 43183]
gi|268314108|gb|ACZ00483.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermomonospora curvata DSM 43183]
Length = 490
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 83/453 (18%), Positives = 162/453 (35%), Gaps = 53/453 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + +VGG VRD+L+ +D+D+ T P++V+++ +
Sbjct: 30 PAADELGRRFAAAGHELALVGGPVRDALLGRPGKDVDLTTDATPEQVLQLVEGWADAIWT 89
Query: 73 TSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130
I +GT+ + +ITT R R +V + + D RRDF +NA+ A
Sbjct: 90 IGIEFGTVGLRKGDLQLEITTYRSESYDPKSRKPEVSYGKSLTEDLARRDFAVNAMAARL 149
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +D GGL DLR +T++ G +D LR++R RF A G + + + A
Sbjct: 150 PGHEFVDPFGGLGDLRRKTLRTPGRPEDSFNDDPLRMMRAARFAAQLGF-TVAPEVVAAM 208
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD------ 244
++I+S+ERI E++KL+ A P + + + G+ + + ++ ++ L+
Sbjct: 209 RDMAGRIEIVSAERIRDELSKLICAPRPRAGLTLLVDTGLAEHVLPELPKLRLEIDEHHR 268
Query: 245 -------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK--------------------- 276
L + +A E D +LR L+ K
Sbjct: 269 HKDVYEHTLIVLEQAIAQEEDGPDLVLRLAALLHDIGKPKTRSFEPGGRVTFHHHEVVGA 328
Query: 277 -SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIF 332
P+++ + + + Y+ ++ +L
Sbjct: 329 KMARHRLSALRYPKDVVADVSRLVELHLRFHGYGDGQWTDSAVRRYVRDAGHLLNRLHKL 388
Query: 333 LALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK-YGIPPGKKV 381
+ + + D+ K L G+++ + GI PG V
Sbjct: 389 TRADCTTRNRRKAERLRRAYDDLEARIARLAAEEELAKIRPELDGNEIQQILGIKPGPLV 448
Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
G ++ + +E L + A
Sbjct: 449 GKAYKFLLDLRLDRG-MIGKEAATAELLRWAAE 480
>gi|330443931|ref|YP_004376917.1| poly A polymerase [Chlamydophila pecorum E58]
gi|328807041|gb|AEB41214.1| poly A polymerase [Chlamydophila pecorum E58]
Length = 410
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 102/406 (25%), Positives = 178/406 (43%), Gaps = 15/406 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L L ++ VGG VRD LM + DIDIAT P V IFS VI
Sbjct: 7 EAAKKVLVKLRNAGYQAYFVGGCVRDMLMGKPMVDIDIATDAPPVIVSTIFSD----VIS 62
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA-D 130
++G I + F++ T R+D TDGR+ + V + D+LRRDF+IN +Y
Sbjct: 63 IGAAFGIIVVKLEGYLFEVATFRNDGQYTDGRHPQQVKFSSMREDALRRDFSINGIYYDP 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ K+ D+V G+ D+ + I+ IG R ED LRILR RF + +
Sbjct: 123 FEDKLFDFVEGIRDIEKKVIRAIGHPRLRFAEDKLRILRAIRFASSLEFTLDPATERALI 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+A + +S ERIW E+ K++++ +P A+V + + IF ++++I L I
Sbjct: 183 KEAPTLVSAVSPERIWQELKKMMKS-HPYQAMVLLLKLKVLVTIFPELRDIPYGILRSTI 241
Query: 251 EAEQVFEW-KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
K +L + L +++ + + + + + +++ + + +S
Sbjct: 242 AFLNKLNPQKFPEILLLLPLFQGVPEEATSAAFSRLKVSNKELRLIEAWYKALPHFQNIS 301
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS-----DIIHWKKPLFP 364
+ L+IF AL + Q +Q L I+ K
Sbjct: 302 -MSRVFWAHFLASPSASMFLEIFSALQKDPSKQQHFIARVQELETRLEKFILRIKTASPL 360
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++ D++ GI PG+ +G++L + I L +E + +L++
Sbjct: 361 ISAPDLMAKGIAPGRLLGDLLKEAENLSIEHEC-LDKEKILAILQE 405
>gi|82751056|ref|YP_416797.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus RF122]
gi|123549198|sp|Q2YY49|CCA_STAAB RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|82656587|emb|CAI81010.1| probable PolyA polymerase family protein [Staphylococcus aureus
RF122]
Length = 400
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 92/410 (22%), Positives = 161/410 (39%), Gaps = 26/410 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 63 VGKEHGTINVVFNNENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF + I ++ A
Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAAERFQEDALRMIRCLRFQSQLSF-EIATETFEAM 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+K LS ERI E+ KL+ N + H+ + F + + ++Q++
Sbjct: 182 RTQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNY-MPYFEHLDMNQINVTE 240
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ I S+ K I K L + + ++
Sbjct: 241 PIDLELLIAIVSV-----------KFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIFT 289
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPLFP 364
E K+F D +I + + + N + I + L + +
Sbjct: 290 KEQLKIFVYDYDTNLIKNIMVAADVLKANDIQGHEPLIVNLQTIDETLHHLPMHNRKDMM 349
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 350 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399
>gi|313792633|gb|EFS40719.1| tRNA adenylyltransferase [Propionibacterium acnes HL110PA1]
gi|313803167|gb|EFS44363.1| tRNA adenylyltransferase [Propionibacterium acnes HL110PA2]
gi|313839560|gb|EFS77274.1| tRNA adenylyltransferase [Propionibacterium acnes HL086PA1]
gi|314963939|gb|EFT08039.1| tRNA adenylyltransferase [Propionibacterium acnes HL082PA1]
gi|315079096|gb|EFT51103.1| tRNA adenylyltransferase [Propionibacterium acnes HL053PA2]
gi|315081559|gb|EFT53535.1| tRNA adenylyltransferase [Propionibacterium acnes HL078PA1]
gi|327334503|gb|EGE76214.1| tRNA adenylyltransferase [Propionibacterium acnes HL097PA1]
gi|327457476|gb|EGF04131.1| tRNA adenylyltransferase [Propionibacterium acnes HL092PA1]
Length = 492
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 79/454 (17%), Positives = 152/454 (33%), Gaps = 59/454 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + + + + + +VGG+VRD+LM D+D T PD+ +
Sbjct: 28 IDTLFEQLPLVGRLGQAFQEAGHELHLVGGSVRDALMGTLGHDLDFTTDATPDQTEAVLR 87
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+ ++GTI ++TT R+D D R + + + D +RRDFT
Sbjct: 88 TLTHATWDIGRAFGTIGARIDDWVVEVTTFRTDAYQPDSRKPVIAYGETLEEDLVRRDFT 147
Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + + D GL D+ ++ +D LR++R RF + G +
Sbjct: 148 VNAMALNAATREFHDPHAGLADIVAGKLRTPFPPERSFSDDPLRMMRAARFTSQLGF-TV 206
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ A + I+S+ER+ E+++ L +P + + GI + ++
Sbjct: 207 TDEVRAAMTDMAGRISIISAERVRDELSRTLLTDHPRAGLDLLVTTGIADHVLPELPALR 266
Query: 239 ------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----- 281
E SL L Q I+ E+ + D R L+ K +
Sbjct: 267 LERDEHHRHKDVYEHSLTVLDQSIDLERRRGHEPDLTGRLAALLHDVGKPATRRFEPGGK 326
Query: 282 -----------------AKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYL 319
K + P +I + + + +++
Sbjct: 327 VSFHHHDVVGAKLVRKRLKALAYPSQIVKDVSKLVELHLRFHGYGDQGWTDSAVRRYVRD 386
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
GD+ + +L I + + D+ L G++
Sbjct: 387 AGDQ--LERLHILTRSDCTTRNRRKAERLEFAYDDLERRIADLTAKEELAAIRPDLDGEE 444
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQE 402
++ GI PG VG ++ E
Sbjct: 445 IMATLGIKPGPAVGKAYKFLLNLRLDEGPHTPDE 478
>gi|227502218|ref|ZP_03932267.1| possible tRNA adenylyltransferase [Corynebacterium accolens ATCC
49725]
gi|227077042|gb|EEI15005.1| possible tRNA adenylyltransferase [Corynebacterium accolens ATCC
49725]
Length = 478
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 89/452 (19%), Positives = 172/452 (38%), Gaps = 55/452 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
++ + +VGG+VRD+L+ D+D T P+ V I + V T I+Y
Sbjct: 29 LVEKFSARGHALYLVGGSVRDALLGRLGNDLDFTTPARPEVVKEILDEWAETVWDTGIAY 88
Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQ 132
GT+ + + + +ITT RSD R +V++ + D +RRDF +NA+ D
Sbjct: 89 GTVSAVYKGQQIEITTFRSDSYDGQSRNPEVIYGDSLEGDLVRRDFKVNAMAIELLADAT 148
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D +GGL+D+ N+ + +D LR+LR RF + E ++ + A
Sbjct: 149 FEFHDPLGGLHDVANKVLDTPDKPEISFHDDPLRMLRAARFASQL-EFHVADRVVAAMRD 207
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------------Q 239
++ ++ ER+ E++KL+ K P + I + N GI IF ++ +
Sbjct: 208 MAAEIQRITVERVQVELDKLMCGKAPWDGIDLLVNTGIADYIFPEIPALRMTTDEHAQHK 267
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------ 281
++ L + +A E D +LR+ L+ K
Sbjct: 268 DVYAHSLKVLRQAMDQEEDGPDLVLRWAALLHDIGKPDTFDNTDGKVSFHHHEVVGAKLT 327
Query: 282 ---AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIFLAL 335
+K P+ + + + Y+ ++ +L +
Sbjct: 328 RKRLRKLKYPKATTEDIGQLVYLHMRFHGFGENQWTDSAVRRYVNDAGDLLPRLHKLVRA 387
Query: 336 HYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKKVGNI 384
+ + + + + L G+++++ G+ PG +VG
Sbjct: 388 DCTTRNAKKARRLQRTYDQLEERIEEIGRKEDLARVRPDLDGNEIMEILGLSPGPEVGQA 447
Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ K+ + L +E+ LR+ S Q
Sbjct: 448 WSYLKEMRLEYG-PLEREEAIAKLRQWWESKQ 478
>gi|225620332|ref|YP_002721589.1| polyA polymerase [Brachyspira hyodysenteriae WA1]
gi|225215151|gb|ACN83885.1| polyA polymerase [Brachyspira hyodysenteriae WA1]
Length = 464
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 96/452 (21%), Positives = 175/452 (38%), Gaps = 56/452 (12%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ I +L + +VGGAVRDS+M ++ + DI T P+ V RIF IPT
Sbjct: 11 PIKEIARILYVEGFQCFLVGGAVRDSIMGITPHEYDITTDARPEDVQRIFK----YTIPT 66
Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYADQ 131
I +GTI +I + +ITT RSD +DGR+ + + D RRD TINA+ +
Sbjct: 67 GIKHGTILVIIEDMHVEITTFRSDGNYSDGRHPDHVEYATSIEEDLPRRDLTINAMAYNI 126
Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G +ID G+ D++ + +K +G+ + R ED LRI+R RF +
Sbjct: 127 LDGSLIDMFDGMKDIKKKIVKSVGNPYERFSEDGLRIMRAIRFATKLDFDIEKETFDAIT 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------ 238
I + ERI E N +L +KNP + + G+ I ++
Sbjct: 187 HSTGMLASIAA-ERIREEFNGILLSKNPFRGLELLRKTGVLSLILPELMQGFGVNQNKFH 245
Query: 239 -QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI------------------- 278
++ L + E + ++ L+R L K +
Sbjct: 246 KYDVYYHILHTIQSVEPLETEELTLLVRLAALFHDIAKPMVQKKVSKQDDPVYYNHEVVG 305
Query: 279 ----LSMAKKFSLPREIRYFLISFFNCNF--NQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
+ K+ F+ + Q + +++ G + + L++
Sbjct: 306 ANIAKKIMKRLKYSNSEIDFVTLLVRQHMFYYQDEWTDGAVRRFMRAIGVENIRPLLRLR 365
Query: 333 LALHYNNLTHQDTC---------FILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVG 382
A + +D I +++ + + G+D++ ++ + PG +G
Sbjct: 366 EADRLGSGNRKDKESKAIPKLLARIDKIIEEENAITVKDLKIDGNDLINEFNLNPGPLIG 425
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
IL + ++ ++E L + + S
Sbjct: 426 KILNYLLDLILDEPELNNREFLMEKTKNFLES 457
>gi|306834779|ref|ZP_07467843.1| tRNA adenylyltransferase [Corynebacterium accolens ATCC 49726]
gi|304569307|gb|EFM44808.1| tRNA adenylyltransferase [Corynebacterium accolens ATCC 49726]
Length = 478
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 89/452 (19%), Positives = 172/452 (38%), Gaps = 55/452 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
++ + +VGG+VRD+L+ D+D T P+ V I + V T I+Y
Sbjct: 29 LVDKFSARGHALYLVGGSVRDALLGRLGNDLDFTTPARPEVVKEILDEWAETVWDTGIAY 88
Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQ 132
GT+ + + + +ITT RSD R +V++ + D +RRDF +NA+ D
Sbjct: 89 GTVSAVYKGQQIEITTFRSDSYDGQSRNPEVIYGDSLEGDLVRRDFKVNAMAIELLADAT 148
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D +GGL+D+ N+ + +D LR+LR RF + E ++ + A
Sbjct: 149 FEFHDPLGGLHDVANKVLDTPDKPEISFHDDPLRMLRAARFASQL-EFHVADRVVAAMRD 207
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------------Q 239
++ ++ ER+ E++KL+ K P + I + N GI IF ++ +
Sbjct: 208 MAAEIQRITVERVQVELDKLMCGKAPWDGIDLLVNTGIADYIFPEIPALRMTTDEHAQHK 267
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------ 281
++ L + +A E D +LR+ L+ K
Sbjct: 268 DVYAHSLKVLRQAMDQEEDGPDLVLRWAALLHDIGKPDTFDNTDGKVSFHHHEVVGAKLT 327
Query: 282 ---AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIFLAL 335
+K P+ + + + Y+ ++ +L +
Sbjct: 328 RKRLRKLKYPKATTEDIGQLVYLHMRFHGFGENQWTDSAVRRYVNDAGDLLPRLHKLVRA 387
Query: 336 HYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKKVGNI 384
+ + + + + L G+++++ G+ PG +VG
Sbjct: 388 DCTTRNAKKARRLQRTYDQLEERIAEIGRKEDLARVRPDLDGNEIMEILGLSPGPEVGQA 447
Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ K+ + L +E+ LR+ S Q
Sbjct: 448 WSYLKEMRLEYG-PLEREEAIAKLRQWWESKQ 478
>gi|327539083|gb|EGF25715.1| tRNA nucleotidyltransferase/poly(A) polymerase [Rhodopirellula
baltica WH47]
Length = 420
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 90/417 (21%), Positives = 176/417 (42%), Gaps = 22/417 (5%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
I+ ++ + I++ LN + + GG VRD+L+ +D D+AT P+ V
Sbjct: 6 TEILSSP--EAAEAVRIITELNDAGFVAVLAGGCVRDALLGRKPKDFDVATDATPESVRE 63
Query: 62 IFSKTRYKVIPTSISYGTIKIICRK-----------KYFDITTLRSD-LITDGRYAKVVF 109
+F K + S+G I ++ + ++ T R+D +DGR V
Sbjct: 64 VFGKRN--TLAFGESFGVIGVLPPRSAVTEEPSAKLMPTEVATFRADGNYSDGRRPDSVT 121
Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168
D +AD++RRDFTIN ++ D KVIDYVGG+ DL ++ IG A R ED LR+L
Sbjct: 122 YGDAEADAMRRDFTINGMFYDLFDSKVIDYVGGIQDLEKGHLRTIGKAVQRFEEDKLRML 181
Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228
R RF G +I+ A + ++S ERI +E+ +++ + + + +
Sbjct: 182 RAVRFATTLGF-SIEYKTFAAIQNHASDISVVSGERIGAEMRRVMTSSASDFGLETLVDT 240
Query: 229 GIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
G+ ++ ++ ++ + S+ I+ + +++ L + + + + + + L
Sbjct: 241 GLALHVWPQLRSMNWTEYSRAIQTTKHRSFEVAMALA-LFHLPGDSIQCLRLLFNDWKLS 299
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
R + + +L + D+ I +
Sbjct: 300 VAERRAIEAALTHAQTITQCDGLPWSRLQPILIDE---DAETIVATARALAPKSRGVARA 356
Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+ LS + P +TG D++ G+ PG + +IL + + ++ ++ L
Sbjct: 357 ARSLSGDPNELNPPPLVTGADLIANGMRPGPEFKSILQSIRDDQLDGKLTSREDALQ 413
>gi|330684979|gb|EGG96654.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Staphylococcus epidermidis VCU121]
Length = 400
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 79/405 (19%), Positives = 155/405 (38%), Gaps = 28/405 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
IL+ + + ++ VGG+VRD LM + DIDI T+ P + IF IP
Sbjct: 9 AKPILNQIQQHGYQAYYVGGSVRDYLMQRPIHDIDITTSATPYEIESIFDH----TIPVG 64
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GTI ++ ++ +++TT R + I R + V F RD D RRDFTINA+ D
Sbjct: 65 KEHGTINVVYNRENYEVTTFRAEEEYIDHRRPSDVHFVRDLYEDVQRRDFTINAIAMDTD 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ DY G +D+ N I+ +G R ED LRILR RF + K + +
Sbjct: 125 YQTFDYFSGEDDINNGIIRTVGQPTERFEEDALRILRGLRFQSQLNFKIEYHTYNAMANQ 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + I + + +G + + + E+ +
Sbjct: 185 MEDIKYLSIERIIVE--------------LKKLISGQNVAKSYHHLIELKAFNFIPYFQN 230
Query: 253 EQVFEWKIDSLLRFIVLISWQD-KKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLSI 310
++ + ID + F I+ + K + + + + N +
Sbjct: 231 FEMHQLNIDEPIHFDTWIALINSKFDEQQPLSPLKISNKEKSHIKQLTTIINQLPTINTK 290
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFPL 365
++ + Y + ++ +++ L N + I++ + ++ +
Sbjct: 291 KDLIMMVYDFDINDILTVIELSTLLSKNQFETPNPLIINPQTIMESYHQLPINERQQLAV 350
Query: 366 TGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G D+++ G V ++L + + S +++ +
Sbjct: 351 NGSDLMQYLNQRGGPWVKDVLRQIECAVVTKQVINSHDEIMKWVD 395
>gi|220925023|ref|YP_002500325.1| polynucleotide adenylyltransferase region [Methylobacterium
nodulans ORS 2060]
gi|219949630|gb|ACL60022.1| Polynucleotide adenylyltransferase region [Methylobacterium
nodulans ORS 2060]
Length = 417
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 125/380 (32%), Positives = 199/380 (52%), Gaps = 13/380 (3%)
Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66
L +L+ L +++ +VGGAVRD+L+ V D+D+ATT+LP+ V+R+ +K
Sbjct: 11 AALLARPRLRRVLAALEAPGEETRLVGGAVRDALLGRRVADVDLATTLLPEEVVRLAAKA 70
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
K +PT I +GT+ ++ + F++TTLR D+ TDGR+A V F RD+ D+ RRDFTINA
Sbjct: 71 GLKPVPTGIDHGTVTVVAEGEPFEVTTLREDIETDGRHAVVRFGRDFARDAERRDFTINA 130
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
L AD G++ D VGG DL + ++FIG A RI EDYLR+LRFFRF A YG +D +G
Sbjct: 131 LSADPAGRLHDTVGGAADLASGRVRFIGAAAQRIREDYLRVLRFFRFHARYGRGALDPEG 190
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L ASI A++GL LS ER+ E+ KLL A A + G+ + + + ++ +L
Sbjct: 191 LAASIAAREGLATLSRERVRVELLKLLAAPGAAQATAILSGTGLLQRLIGGIGDLG--RL 248
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC----N 302
+++ +E V + LR + ++ + L + L ++ +
Sbjct: 249 ARLAASEAVPDP-----LRRLAALAVLSGPDADRLRDALRLSKAEHARLAAYAEASAALH 303
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
Q + + EI++ L G + + + + LT + + S P
Sbjct: 304 GAQAPVDVAEIRRRVALSGVQAVSDAILVLTGEPTPVLTEEAARALAAFASGAE--PVPA 361
Query: 363 FPLTGDDVVKYGIPPGKKVG 382
P++G +V G PG +G
Sbjct: 362 LPISGALLVSRGAKPGPSLG 381
>gi|126654221|ref|ZP_01726017.1| tRNA nucleotidyltransferase [Bacillus sp. B14905]
gi|126589303|gb|EAZ83459.1| tRNA nucleotidyltransferase [Bacillus sp. B14905]
Length = 392
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 89/399 (22%), Positives = 161/399 (40%), Gaps = 27/399 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+++ L + ++ IVGGAVRD+L+N D+D+AT LP+ V +F + +
Sbjct: 10 AYSVIEQLEQAGFEAVIVGGAVRDALLNRPAHDVDVATNALPEEVKTVFQ----RTVDIG 65
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ +I ++TT R + R KV F R + D RRDFT+NA+ +
Sbjct: 66 IQHGTVLVIVPAGPVEVTTYRTDGEYTDHRRPDKVQFVRSLQDDLQRRDFTMNAIAMRRD 125
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G +DY GG D+ R I+ +GDA R ED LR+LR RF A + + +
Sbjct: 126 GSFVDYYGGRQDIDLRIIRAVGDAQKRFAEDALRMLRAIRFSAQLDFTIAEDTLMAIQHR 185
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ-LSQVIE 251
A I + ++ G ++E L L +
Sbjct: 186 AADIAFIAKERIKAE--------------LDKLWLGTTVFSGLQKLEESGLAAYLQGSFQ 231
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
A++ +E++ + + + + + + L + F+ S K+
Sbjct: 232 ADRWYEFQTEDKHVGWAYFALLQGANWREILRDYRLSNKEMAFVKSVLTAYEALKS---G 288
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
++ Y ++ + A + L + + ILQ + +K + G D++
Sbjct: 289 WTNSHYFTYKEQELEAAIYFAKLLQADVCLPSEPIRILQ--DKLPIRQKQEIAVNGADLL 346
Query: 372 KY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
K+ G G V L + I++ Q+ + L+
Sbjct: 347 KWSGKKGGPWVKEALEDILEAIIHNELANDQQQIKKWLK 385
>gi|298528178|ref|ZP_07015582.1| Polynucleotide adenylyltransferase region [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511830|gb|EFI35732.1| Polynucleotide adenylyltransferase region [Desulfonatronospira
thiodismutans ASO3-1]
Length = 898
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 87/418 (20%), Positives = 147/418 (35%), Gaps = 20/418 (4%)
Query: 17 NILSLLNKGEDKS-------CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
I SLL ++ VGG VRD L+ S D+D+ + R ++
Sbjct: 469 EIYSLLKSAGHQARDMGYQVYCVGGFVRDILLGRSNLDVDLVVEGDGIKFARALAEKLDA 528
Query: 70 VIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + T IIC + D+ T R + +V K D RRDF+INAL
Sbjct: 529 RVREHQKFRTAVIICADGRKIDVATARLEYYEHPAALPMVELSSIKMDLYRRDFSINALA 588
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ + + + + +ED RI+R RF +G +
Sbjct: 589 VHLNPQNMGRLVDFFGGQRDLKDKVIRVLHSLSFVEDPTRIVRAIRFEQRFGFRIGAQTE 648
Query: 187 LVASIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ LS RI+ E+ + E PL ++ M N G+ K I ++ +S +
Sbjct: 649 KLIKNALELNIFHQLSGSRIFHELQMIFEEDTPLPCLIRMENYGLLKHIHPMLK-LSSNV 707
Query: 246 LSQVIEAEQVFEW--------KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+ + E E+V W KID + +++ + + + + + + I
Sbjct: 708 KNILTETEKVINWFQLLYLEEKIDKWILYMLGLLNHINEVQAGIIMQRFNFSQKKTRHIF 767
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
N SI + I L + Q V I H
Sbjct: 768 SLRSQINSAMSSISAWHQDQGKLSSLYFILNPLPLEGLLFLMARVQKEELRKYVSHYITH 827
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ ++G D+ K G+ PG + G IL K I+ QE + +K+ S
Sbjct: 828 LRDIQPQISGRDLKKMGLTPGPEFGRILKELKAAQIDGVACDRQEQKEWVRQKIAEQS 885
>gi|254823068|ref|ZP_05228069.1| PcnA [Mycobacterium intracellulare ATCC 13950]
Length = 480
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 78/452 (17%), Positives = 154/452 (34%), Gaps = 55/452 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
H L + S + +VGG+VRD+L+ D+D T P++V I + +
Sbjct: 21 HAPVLAELGSAFEGAGHQLYLVGGSVRDALLGRLSPDLDFTTDARPEQVQNILRRWADNL 80
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
T I +GT+ + +ITT R+D R V + + D +RRDFT NA+
Sbjct: 81 WDTGIQFGTVGVGKGDHRLEITTFRADTYDQVSRNPDVQYGDRLEDDLVRRDFTANAMAV 140
Query: 130 DQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ +D +GGL LR R + +D LR+LR RF + G
Sbjct: 141 RITPEGPGEFLDPLGGLAALRERVLDTPAAPEVSFGDDPLRMLRAARFVSQLGFTVAPRV 200
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
A + +I + ++KL+ +P I + G+ + + ++
Sbjct: 201 RAAIEQMASQLGRISAERVAAE-LDKLVLGDDPTAGIDLLVQTGMGEVVLPEIGGMQMAI 259
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------- 281
+++ L+ + +A + + D +LR+ L+ K +
Sbjct: 260 DEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEANGGVSFHHH 319
Query: 282 -----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIA 327
+ +++ + + + Y+ ++
Sbjct: 320 EVVGAKMVRKRLRALKYSKQMVEDISQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGPLLP 379
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK-YGIP 376
+L + + + + + L G+ +++ GIP
Sbjct: 380 RLHKLVRADCTTRNKRRAARLQSSYDRLETRIAELAAQEDLARVRPDLDGNQIMELLGIP 439
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G +VG K+ + + E LL
Sbjct: 440 AGPQVGEAWRFLKELRLERGPLDTDEATAELL 471
>gi|268610303|ref|ZP_06144030.1| poly A polymerase family protein [Ruminococcus flavefaciens FD-1]
Length = 439
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 90/439 (20%), Positives = 155/439 (35%), Gaps = 41/439 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ D+ IL L ++ VGG VRD++M S D DI T LP++V+ F YK
Sbjct: 1 MNGKDVDEILERLESCGFEAYTVGGCVRDTIMGRSAHDTDITTNALPEQVIAAFD--GYK 58
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
VIPT + +GT+ I+ ++ITT R + R V FT D RRDFT+NA+
Sbjct: 59 VIPTGLKHGTVTILKNSVPYEITTYRIDGEYKDSRRPETVEFTASITEDLARRDFTMNAI 118
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D+ G + D GG D+ N I+ +GD R ED LRI+R RF A G +
Sbjct: 119 AMDRHGNIADPFGGKEDIENGIIRCVGDPVQRFTEDALRIMRAVRFAAQLGFSIEEKTAE 178
Query: 188 VASIKAKKGLKILSSERIWS-------------------EINKLLEAKNPLNAIVHMYNG 228
++ I I ++ P
Sbjct: 179 AVHSMKERLKNISMERIRSELDKILCGRYCVEVLLEYSDIITTIIPEFEPSIGFDQHSPY 238
Query: 229 GIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI--------DSLLRFIVLISWQDKKSILS 280
+ V+ + V + I D+ R +
Sbjct: 239 HRYDVWEHTVRAVGFAPQDNVKMRTALLFHDIAKPACATFDANCRGHFKKHGPVGAEMTK 298
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA--LHYN 338
K ++K +KK+ GD + +++ L N
Sbjct: 299 EIMKRMKYDGETMTYAVMLIARHSKKVFDRIAVKKMMADIGDDLFFELMELKKCDNLAKN 358
Query: 339 NLTHQDTCFILQVLSD--IIHWKKPL-----FPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
+ ++ +++ + ++ ++G+D++ G+ G+ VG L
Sbjct: 359 DFVFEENELFDRLMDEGRLLIENNECRGLRNLAVSGNDLMAIGLK-GRDVGAALKELLTL 417
Query: 392 WINSSFQLSQEDLHHLLRK 410
+ ++ L + ++
Sbjct: 418 VLEEKLPNIKDTLINYAKQ 436
>gi|315498160|ref|YP_004086964.1| polynucleotide adenylyltransferase region [Asticcacaulis
excentricus CB 48]
gi|315416172|gb|ADU12813.1| Polynucleotide adenylyltransferase region [Asticcacaulis
excentricus CB 48]
Length = 409
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 122/416 (29%), Positives = 190/416 (45%), Gaps = 20/416 (4%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59
+ I + + + L VGG VRD +M + D+D++T + PD
Sbjct: 1 MHIALPPEMTAPAVQRVFAALEAAGGAGCVRFVGGCVRDVVMGRTPGDLDLSTQLTPDAT 60
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
S + +PT ++GTI + + F+IT+LR D+ TDGR A V +T DW D+ R
Sbjct: 61 EAALSAASIRHVPTGKAFGTITAVIDGQPFEITSLREDVETDGRRAVVSYTTDWSRDAQR 120
Query: 120 RDFTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RD +NALYAD +G+V D G +D R ++ IGDA RI EDYLRILRFFRF A +G
Sbjct: 121 RDLYLNALYADIRGEVFDPTGQGFDDARAARVRLIGDAETRIREDYLRILRFFRFSASHG 180
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+D+ L A + + G+ LS ERI E+ KLL +P+N + M G+ +
Sbjct: 181 -TGLDAASLSACVALRAGIDSLSGERIQQELFKLLGIADPVNVVRRMTETGVMAHVVPGA 239
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS--MAKKFSLPREIRYFLI 296
E F D + R I+L+ Q L+ + + R
Sbjct: 240 S-------VNAERVEAGFPLTSDPIQRLIILVGGQGWGETLTALILRLRLSSRMADRLSA 292
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ C T S+ +++ Y YG + L + A L+ + + Q L I
Sbjct: 293 AAVACAEVDITASLAALRRGLYRYGRHAISDGLVLRGA--EAGLSPEAWKALDQNLKKIE 350
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL--SQEDLHHLLRK 410
P+FPL ++ G+ PG ++G L + EWI F ++ + + ++
Sbjct: 351 ---VPVFPLKSARLISIGLAPGPELGQTLRRIEAEWIAHDFSPIVIEDAIDAITKQ 403
>gi|289427314|ref|ZP_06429027.1| tRNA adenylyltransferase [Propionibacterium acnes J165]
gi|289159244|gb|EFD07435.1| tRNA adenylyltransferase [Propionibacterium acnes J165]
Length = 499
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 83/460 (18%), Positives = 154/460 (33%), Gaps = 59/460 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + + + + +VGG+VRD+LM D+D T PD I
Sbjct: 35 INALFEQIPLVAELGEAFAQASHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILR 94
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+ + ++GTI ++TT R+D D R ++V+ K D +RRDFT
Sbjct: 95 QHTHATWDIGRAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFT 154
Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + D GL D+ + ++ +D LR++R RF + G +
Sbjct: 155 VNAMALHAATRTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLGF-TV 213
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
++ A ++I+S+ER+ E++K L +P + + I + ++
Sbjct: 214 TNEVRAAMTDMASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALR 273
Query: 239 ------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK---------- 276
E SL L Q I+ E+ D R L+ K
Sbjct: 274 LERDEHHRHKDVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGK 333
Query: 277 ------------SILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYL 319
K + P ++ + + + +++
Sbjct: 334 VSFHHHDIVGAKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRD 393
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDD 369
GD+ + +L I + + D+ L G
Sbjct: 394 AGDQ--LERLHILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQ 451
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ GI PG +VG ++ E + LL
Sbjct: 452 IMAILGIKPGPEVGKAYKFLLNLRLDEGPHTPDEAKNALL 491
>gi|313806788|gb|EFS45286.1| tRNA adenylyltransferase [Propionibacterium acnes HL087PA2]
gi|313817579|gb|EFS55293.1| tRNA adenylyltransferase [Propionibacterium acnes HL046PA2]
gi|313821595|gb|EFS59309.1| tRNA adenylyltransferase [Propionibacterium acnes HL036PA1]
gi|313824460|gb|EFS62174.1| tRNA adenylyltransferase [Propionibacterium acnes HL036PA2]
gi|313826807|gb|EFS64521.1| tRNA adenylyltransferase [Propionibacterium acnes HL063PA1]
gi|314926209|gb|EFS90040.1| tRNA adenylyltransferase [Propionibacterium acnes HL036PA3]
gi|314961597|gb|EFT05698.1| tRNA adenylyltransferase [Propionibacterium acnes HL002PA2]
gi|314979986|gb|EFT24080.1| tRNA adenylyltransferase [Propionibacterium acnes HL072PA2]
gi|315083014|gb|EFT54990.1| tRNA adenylyltransferase [Propionibacterium acnes HL027PA2]
gi|315086547|gb|EFT58523.1| tRNA adenylyltransferase [Propionibacterium acnes HL002PA3]
gi|315087950|gb|EFT59926.1| tRNA adenylyltransferase [Propionibacterium acnes HL072PA1]
gi|327334060|gb|EGE75775.1| tRNA adenylyltransferase [Propionibacterium acnes HL096PA3]
gi|327444535|gb|EGE91189.1| tRNA adenylyltransferase [Propionibacterium acnes HL013PA2]
gi|328758040|gb|EGF71656.1| tRNA adenylyltransferase [Propionibacterium acnes HL020PA1]
gi|332676693|gb|AEE73509.1| CCA-adding enzyme [Propionibacterium acnes 266]
Length = 507
Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats.
Identities = 83/460 (18%), Positives = 154/460 (33%), Gaps = 59/460 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + + + + +VGG+VRD+LM D+D T PD I
Sbjct: 43 INALFEQIPLVAELGEAFAQASHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILR 102
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+ + ++GTI ++TT R+D D R ++V+ K D +RRDFT
Sbjct: 103 QHTHATWDIGRAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFT 162
Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + D GL D+ + ++ +D LR++R RF + G +
Sbjct: 163 VNAMALHAATRTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLGF-TV 221
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
++ A ++I+S+ER+ E++K L +P + + I + ++
Sbjct: 222 TNEVRAAMTDMASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALR 281
Query: 239 ------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK---------- 276
E SL L Q I+ E+ D R L+ K
Sbjct: 282 LERDEHHRHKDVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGK 341
Query: 277 ------------SILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYL 319
K + P ++ + + + +++
Sbjct: 342 VSFHHHDIVGAKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRD 401
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDD 369
GD+ + +L I + + D+ L G
Sbjct: 402 AGDQ--LERLHILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQ 459
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ GI PG +VG ++ E + LL
Sbjct: 460 IMAILGIKPGPEVGKAYKFLLNLRLDEGPHTPDEAKNALL 499
>gi|258422511|ref|ZP_05685419.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9635]
gi|257847268|gb|EEV71274.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9635]
Length = 411
Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats.
Identities = 81/413 (19%), Positives = 159/413 (38%), Gaps = 32/413 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 73
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF +
Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSFDIATETFEAMR 193
Query: 191 IKAKKGL-----KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----VQEI 241
+ +I+ + E+ N L ++ F+ + ++ + I
Sbjct: 194 TQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNYMPYFEHLDMNQINVTEPI 253
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L+ L ++ + + + L + ++ + A + +E + ++
Sbjct: 254 DLELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPIIITKEQLKMFVYDYDT 313
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
N + + ++ K + G + +I L I + L + + +
Sbjct: 314 NLIKNVMVAADVLKANDIQGHEPLIVNL----------------QTIYETLHHLPMYYRK 357
Query: 362 LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 358 DMMVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410
>gi|262276836|ref|ZP_06054629.1| tRNA-nucleotidyltransferase 1 [alpha proteobacterium HIMB114]
gi|262223939|gb|EEY74398.1| tRNA-nucleotidyltransferase 1 [alpha proteobacterium HIMB114]
Length = 414
Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats.
Identities = 110/399 (27%), Positives = 194/399 (48%), Gaps = 7/399 (1%)
Query: 13 SDLINILSLLNKGEDKS--CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ + +++N E+ VGG VRD L + DID AT++ P++V +K+
Sbjct: 18 EEAKKVFNIINSDEEDVVCLFVGGCVRDLLFGKELSDIDFATSLEPEQVKNKLNKSNITY 77
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T YG+IK+ K+F++ TLR D DGR+A V+FT+DW+ D+LRRD TIN++Y D
Sbjct: 78 DDTFEKYGSIKVFINNKFFEVNTLRKDFNEDGRHASVMFTKDWRQDALRRDLTINSIYCD 137
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G+V D G++D++N IKFIGD RI EDYLR LR+FRF + + + + L
Sbjct: 138 LDGRVYDPFKGVDDIKNGHIKFIGDPAKRIKEDYLRALRYFRFHIQFSKHDHEEYILKYI 197
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ + ++ LS ER+ E++K+L + + ++ +F ++ ++ ++ + +
Sbjct: 198 SQNQDNIENLSKERLIDEMSKILISGLGYKLFSNNFSKDLFLSVYKGIKYLTRLEFKR-- 255
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
++ K + I L+ ++ K F+L EI+ L + F KT
Sbjct: 256 --KKRILKKEVDWVVLISLLLIDQTRNFERFVKDFNLSNEIKSRLNNL-QLQFTFKTTDT 312
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
E + K +A + F+ Y L I K P F + +
Sbjct: 313 IEKIENLKKAVLKYGVASVIDFIHFQYLVNEKYHYDLYESNLKVIKETKPPEFKFDANIL 372
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+K G +GN + KQ W+ +++++ +D+ ++
Sbjct: 373 IKKGFKEDANLGNAINFLKQRWVANNYEIRDKDIDDAIQ 411
>gi|254777641|ref|ZP_05219157.1| PcnA [Mycobacterium avium subsp. avium ATCC 25291]
Length = 480
Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats.
Identities = 83/452 (18%), Positives = 166/452 (36%), Gaps = 55/452 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
H L + S + + +VGG+VRD+L+ D+D T P++V +I + +
Sbjct: 21 HAPMLRELGSAFDAAGHQLYLVGGSVRDALLGRLSPDLDFTTDARPEQVQQILRRWADNL 80
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
T I +GT+ + + +ITT R+D R +V F + D +RRDFT NA+
Sbjct: 81 WDTGIEFGTVGVGKGDRRLEITTFRADTYDQVSRNPQVRFGNRLEDDLVRRDFTANAMAV 140
Query: 130 DQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ +D +GGL LR R + +D LR+LR RF + G +
Sbjct: 141 RITPDGPGEFLDPLGGLAALRQRVLDTPATPEESFGDDPLRMLRAARFVSQLGF-TVAPR 199
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
A + L +S+ER+ +E++KL+ +P+ I + + G+ + + ++
Sbjct: 200 VREAIERMAPQLARISAERVAAELDKLVLGDDPVAGIDLLVHSGMGEVVLPEIGGMQMAI 259
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------- 281
+++ L+ + +A + + D +LR+ L+ K +
Sbjct: 260 DEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPNGGVSFHHH 319
Query: 282 -----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIA 327
+ +++ + + + Y+ ++
Sbjct: 320 EVVGAKMVRKRLRALRYSKQMVDDVSQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGPLLP 379
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIP 376
+L + + + + + L G+ +++ GIP
Sbjct: 380 RLHKLVRADCTTRNKRRAARLQAAYDRLEARIAELAAQEDLARVRPDLDGNQIMEILGIP 439
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G +VG K+ + E LL
Sbjct: 440 AGPQVGEAWRFLKELRLERGPLDPDEATAELL 471
>gi|290890522|ref|ZP_06553597.1| hypothetical protein AWRIB429_0987 [Oenococcus oeni AWRIB429]
gi|290479918|gb|EFD88567.1| hypothetical protein AWRIB429_0987 [Oenococcus oeni AWRIB429]
Length = 399
Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats.
Identities = 105/399 (26%), Positives = 174/399 (43%), Gaps = 22/399 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I +L+ L ++ VGG+VRD+++ + D+DI T LP+ + RIF
Sbjct: 10 KEAIPVLNCLENHGYQAYFVGGSVRDAILRRPIHDVDITTDALPNEMKRIFKTADNYA-- 67
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVV-FTRDWKADSLRRDFTINALYAD 130
+GT + K +++TT R D R+ K V FT++ K D RRDFTINA +
Sbjct: 68 -GEKHGTDLVFLNGKKYEVTTFRIDGKYLDNRHPKNVSFTKNLKEDLSRRDFTINAFAMN 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
Q+G++ DY GLNDL+ + I+ +GDA R ED LRILR FRF + K + +
Sbjct: 127 QEGELFDYFSGLNDLKKKIIRTVGDAKQRFSEDALRILRAFRFSSQLDFKIEEETLRASQ 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ + I + ERI+ E +KLL KNP ++ MY+ GI + L +
Sbjct: 187 MIKENLNDIAT-ERIFVEFSKLLAGKNPQRSLRQMYDLGIVDFLPGHELITDQSDLFRNY 245
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
Q I+ + S + S+ + + +++ + N K +
Sbjct: 246 IGIQSSSHAINWT--RFIFFSNLRESSLTKYLGSWKMSNQLKKQIFKSINLLEKDKPSKL 303
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ A L+I +AL + D +L ++ + G D+
Sbjct: 304 ------------DLFDAGLEISIALSA--IKRDDRNNLLSDYENLAIHDLSELDINGIDL 349
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
GIP G G I+ K++ I +++ L +
Sbjct: 350 KNIGIPVGPIYGKIIEDLKEKVILGKINNNKQRLLKEAK 388
>gi|94967528|ref|YP_589576.1| metal dependent phosphohydrolase [Candidatus Koribacter versatilis
Ellin345]
gi|94549578|gb|ABF39502.1| metal dependent phosphohydrolase [Candidatus Koribacter versatilis
Ellin345]
Length = 454
Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats.
Identities = 92/450 (20%), Positives = 164/450 (36%), Gaps = 60/450 (13%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
I I+ L ++ +VGG VRD L+ D D+AT +PD+VM+IF K
Sbjct: 6 AAIEIVKTLRGHGHQAYLVGGCVRDLLLGRDPADYDVATDAIPDQVMKIFP----KTWAV 61
Query: 74 SISYGTIKII----------------CRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKA 115
+G + + ++ T RSD + +DGR+ F++D +
Sbjct: 62 GAQFGVVLVPVPDEPECDPEATHPQSHHHGCIEVATFRSDGVYSDGRHPDEVRFSQDPRE 121
Query: 116 DSLRRDFTINALYAD--QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
D RRDFTIN + D +V+D+VGG DL + I+ IGD R ED LR+LR RF
Sbjct: 122 DVQRRDFTINGMLLDPLNHDEVLDFVGGRADLAAKIIRTIGDPRQRFEEDKLRMLRAVRF 181
Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
A E I + + + + ++S ER+ E+ K+L + A + G+ +
Sbjct: 182 AAR-FEYEIAPETMAVIQQLSPQISVVSHERVRDELTKMLTEGHARRAFELLDESGLLIQ 240
Query: 234 IFLDVQEIS-----------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282
+ ++ ++ D + + L + L+ K A
Sbjct: 241 VLPEIAKMKGVQQPPQFHPEGDVWIHTLMLLEQLPPNCSPTLAWGALLHDVGKPPTFRRA 300
Query: 283 K---------------------KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+ E + + + ++ L
Sbjct: 301 PDRIRFDGHVDVGVRMTEVLGKQMRFSNEQLDQVSALVENHMKFAEVTHMRESTLKRFMR 360
Query: 322 DKVMIAKLKIFLALHYNNLTHQ-DTCFILQVLSDIIHWKK-PLFPLTGDDVVKYGIPPGK 379
+++ + + F+ Q + + + P +TG D++ G PG
Sbjct: 361 LPKFDEHMELHKMDCLASHRNLGSYDFLKQKMEETQPKEIRPEPLVTGADLIALGHRPGP 420
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
IL + + Q S+E ++
Sbjct: 421 LFKEILSSVEDGQLEGRLQ-SREQAMAFVQ 449
>gi|29840677|ref|NP_829783.1| poly(A) polymerase family protein [Chlamydophila caviae GPIC]
gi|29835027|gb|AAP05661.1| poly(A) polymerase family protein [Chlamydophila caviae GPIC]
Length = 410
Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats.
Identities = 106/417 (25%), Positives = 169/417 (40%), Gaps = 19/417 (4%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M +I IL L ++ VGG VRD LM ++DIDIAT P V
Sbjct: 1 MTTIALEA------AKKILLKLRNSGYQAYFVGGCVRDMLMGKPIEDIDIATNAPPVIVS 54
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLR 119
IF+ + ++G I + + F++ T RSD DGR+ + V K D+LR
Sbjct: 55 TIFTD----TLSLGAAFGIIVVKENNRLFEVATFRSDENYEDGRHPERVVFSSMKEDALR 110
Query: 120 RDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN +Y D + D V G DL R ++ IG R ED LRILR RF + G
Sbjct: 111 RDFTINGMYYDPFEEKLFDLVEGRRDLEKRVVRAIGHPKLRFSEDKLRILRAVRFSSSLG 170
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ +A + +S ERIW E+ K+L+ P A+ + I IF ++
Sbjct: 171 FSLDPATERAIIKEAPTLVNSVSPERIWQELRKMLKKN-PYEALSLLIKLKIITVIFPEL 229
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+++ L IE + + F++ + + +A LI
Sbjct: 230 RDVPPSLLRVNIEFAKKLNPLEFPEICFLLPLFQGVSEEAACVAFTRLRVSNKDLKLIQL 289
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS----- 353
+ Q + L +F A+ + Q +Q L
Sbjct: 290 WYQALPQFQNISNNRVFWAHFLASPTAHLFLSLFSAIQKDPSKQQHFIARVQELETRLEQ 349
Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
I+ K ++ D++ GI PG+ +G++L + I + +E + LL++
Sbjct: 350 FILRIKTSSPLVSAPDLISRGIAPGRLLGDLLREAETLSIENECH-DKEKILLLLKE 405
>gi|320102813|ref|YP_004178404.1| polynucleotide adenylyltransferase region [Isosphaera pallida ATCC
43644]
gi|319750095|gb|ADV61855.1| Polynucleotide adenylyltransferase region [Isosphaera pallida ATCC
43644]
Length = 471
Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats.
Identities = 81/414 (19%), Positives = 162/414 (39%), Gaps = 25/414 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ ++ +L + GG VRD+L+ L D D+AT P+RV+++F + +
Sbjct: 32 RKFAVEVVEILKNQGYLAYFAGGCVRDTLLGLIPSDYDVATNATPERVLKLFR----RTV 87
Query: 72 PTSISYGTIKIICRKKYF--DITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+S+G ++++ K + ++ T RSD + +DGR V D K D+LRRDFTIN ++
Sbjct: 88 NVGLSFGVVRVVAPKGGWDVEVATFRSDGVYSDGRRPDSVTYGDAKEDALRRDFTINGMF 147
Query: 129 ADQ--QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
D +VID+VGG +DL R ++ IG+ R ED LR++R RF A +
Sbjct: 148 MDPLDHDRVIDFVGGRDDLARRILRAIGNPRDRFTEDKLRLIRAVRFAARFDLTMDPLTE 207
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A + + K+L + A+ + G+ + ++ +
Sbjct: 208 QAIRDMADQLGVVAFERIAQE-FRKMLAHSSRARAVSLCRDLGLMPTLLPNLPHEAYQPQ 266
Query: 247 SQVIEAEQVFEWKIDSLLRFIV--LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ + D+ + + + D ++++ K+ L + +
Sbjct: 267 VNWLVLPTLSALPDDAPFETALATVCNRLDPTTLIANLKRLRLSNPEIKRIAWLAEHRHD 326
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK---- 360
+L + + L + L + ++
Sbjct: 327 LDHARELPRHRLKRVLAHPHAGELI----VLARAEAIARGDDATLANIDWADAYRHDLPE 382
Query: 361 ----PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
P ++G D+V G+ PG + +L + ++ ++ L+R+
Sbjct: 383 GPLDPPLLVSGHDLVALGVKPGPRFAALLEAIRDRQLDGLI-TDRDQALDLIRR 435
>gi|314987177|gb|EFT31269.1| tRNA adenylyltransferase [Propionibacterium acnes HL005PA2]
gi|314990621|gb|EFT34712.1| tRNA adenylyltransferase [Propionibacterium acnes HL005PA3]
Length = 507
Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats.
Identities = 82/462 (17%), Positives = 153/462 (33%), Gaps = 62/462 (13%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + + + + +VGG+VRD+LM D+D T PD I
Sbjct: 43 INALFEQIPLVAELGEAFAQASHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILR 102
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+ + ++GTI ++TT R+D D R ++V+ K D +RRDFT
Sbjct: 103 QHTHATWDIGRAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFT 162
Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + D GL D+ + ++ +D LR++R RF + G +
Sbjct: 163 VNAMALHAATRTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLGF-TV 221
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
++ A ++I+S+ER+ E++K L +P + + I + ++
Sbjct: 222 TNEVRAAMTDMASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALR 281
Query: 239 ------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK---------- 276
E SL L Q I+ E+ D R L+ K
Sbjct: 282 LERDEHHRHKDVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGK 341
Query: 277 ------------SILSMAKKFSLPREIRYFLISFFNCNFNQKT-----LSIPEIKKLFYL 319
K + P ++ + + + +++
Sbjct: 342 VSFHHHDIVGAKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRD 401
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
GD+ + +L I + + D+ L G
Sbjct: 402 AGDQ--LERLHILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQ 459
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQL---SQEDLHHL 407
++ GI PG +VG ++ S+ L
Sbjct: 460 IMAILGIKPGPEVGKAYKFLLNLRLDEGPHTPDESKNALLAW 501
>gi|300870433|ref|YP_003785304.1| polyA polymerase family protein [Brachyspira pilosicoli 95/1000]
gi|300688132|gb|ADK30803.1| polyA polymerase family protein [Brachyspira pilosicoli 95/1000]
Length = 464
Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats.
Identities = 94/444 (21%), Positives = 176/444 (39%), Gaps = 56/444 (12%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ I +L+ K +VGGAVRDS+M ++ + DI T P+ V R+F +PT
Sbjct: 11 AVKEIARILHIEGFKCFLVGGAVRDSIMGITPHEYDITTDAKPEDVQRMFK----YTVPT 66
Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYADQ 131
I +GT+ +I + +ITT RSD +DGR+ + + D RRD TINA+ +
Sbjct: 67 GIKHGTVLVIIEDMHVEITTFRSDGNYSDGRHPDKVEYASSIEEDLPRRDLTINAMAYNV 126
Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G +ID G+ D++ + ++ +G+ + R ED LRI+R RF +I+ + A
Sbjct: 127 LDGTLIDMFDGMKDIKRKIVRSVGNPYERFSEDGLRIMRAIRFATKLNF-DIEKETFEAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------ 238
+ L ++SERI E N +L + NP I + G+ I ++
Sbjct: 186 CHSTGMLASIASERIREEFNGILLSNNPFRGIELLRKTGVLPLIMPELMQGFGVNQNKFH 245
Query: 239 -QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI------------------- 278
++ L + E + ++ L+R L K +
Sbjct: 246 KYDVYYHILHTIQAVEPLENDQLTLLVRLAALFHDIAKPMVQKKVSKQDDPVYYNHEVVG 305
Query: 279 ----LSMAKKFSLPREIRYFLISFFNCNF--NQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
+ K+ F+ + Q + +++ G + + LK+
Sbjct: 306 SSVAKKIMKRLKYSNAEIEFVTLLVRQHMFYYQDEWTDGAVRRFMRAVGVENIKPLLKLR 365
Query: 333 LALHYNNLTHQDTC---------FILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVG 382
A + +D I +++ + G+D++ ++ + G +G
Sbjct: 366 EADRIGSGNRKDKESKAIPKLLARIDKIIEAENAITVKDLKIDGNDLIREFNLKQGPMIG 425
Query: 383 NILVHCKQEWINSSFQLSQEDLHH 406
IL + ++ ++ L
Sbjct: 426 KILNYLLDLILDEPDLNEKDILIE 449
>gi|224476578|ref|YP_002634184.1| tRNA CCA-pyrophosphorylase [Staphylococcus carnosus subsp. carnosus
TM300]
gi|254813699|sp|B9DNX1|CCA_STACT RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|222421185|emb|CAL27999.1| putative poly(A) polymerase [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 400
Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats.
Identities = 93/406 (22%), Positives = 166/406 (40%), Gaps = 28/406 (6%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
IL + ++ VGGAVRD LM+ + DIDI T+ PD + IF+ IP
Sbjct: 8 QAAPILQEIQDNGYEAYYVGGAVRDYLMDRPIHDIDITTSASPDEIEGIFTN----TIPI 63
Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+GTI ++ + +++TT R + R ++V+F RD D RRDFTINA+ D
Sbjct: 64 GKEHGTINVVYNHENYEVTTFRAEGEYEDHRRPSEVIFVRDLYKDVERRDFTINAIAMDN 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
Q + DY G +D++N+ IK +G+ + R ED LRILR RF + +
Sbjct: 124 QFNIKDYFNGYSDIQNKLIKTVGNPYERFNEDALRILRGLRFKSQLRFEIDSDTYKAMQE 183
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ----LS 247
K + I + + G ++ + E+ +
Sbjct: 184 KIADTEYLSIERIIIE--------------LRKLLEGTDASIVYPLLNELQFFKYVPFFK 229
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+ + I L ++ Q LSM K + ++ I+ FN + KT
Sbjct: 230 SFNTSAIEIKDPIKLELLIAIMSFKQSSNISLSMLKISNDSKKKIQKYITLFNKLPDIKT 289
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPLFP 364
++ Y I +K LA + L H + I ++ ++I ++
Sbjct: 290 KKALKVFVYDYGISTLSYILDMKDTLAANQIELGHPLIFNIESIDEINQNLIIRQRSDMM 349
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ G D+++ G + ++L + + IN + ++ + ++
Sbjct: 350 VNGKDILESLNQKGGPWLKDVLRNIECAIINQEIPNQKSEIINWVK 395
>gi|329770481|ref|ZP_08261859.1| hypothetical protein HMPREF0433_01623 [Gemella sanguinis M325]
gi|328836230|gb|EGF85899.1| hypothetical protein HMPREF0433_01623 [Gemella sanguinis M325]
Length = 413
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 85/400 (21%), Positives = 174/400 (43%), Gaps = 33/400 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I +L ++NK +S VGG VRD ++N + DIDI T LP+ + IFS K I T
Sbjct: 43 AIEVLEIINKAGFESYFVGGCVRDYILNKNFSDIDITTNALPEEIKEIFS----KTIDTG 98
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ + F + K D RRDFTINA+ D +
Sbjct: 99 IQHGTVTVLYKNNSYEITTFRTEDNYSNHRSPDKVEFVNNLKDDLDRRDFTINAMALDIK 158
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G + D+ G+ND+ N+ IK + + + R ED LR++R FRF + G SI+
Sbjct: 159 GYIYDFHSGVNDITNKIIKTVNNPNERFFEDALRMIRAFRFSSKLG----------FSIE 208
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
I + ++ ++ M N F+ + I + V +
Sbjct: 209 NNTFNAICKNSKLIEYVSIERIITEFKKLFEGMGNKKSFELLLKSGINIYIPFFKYVKKY 268
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ ++ +++ + + + +++ + + + N N N
Sbjct: 269 NDFSKYTFCQIMYYLMFFNKIPISELKKLKLSNKEVSKVKEYDLIYSNFNLNIP------ 322
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
I+K+ Y Y + ++ ++F + + +T ++ +D+ +T ++++
Sbjct: 323 IEKILYQYSLEDVLFISRLFNFMEDRKIL--NTKLNIRSFNDVN--------ITSKEIIE 372
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
PG + +I+ + + + ++ +++L
Sbjct: 373 LVNKTPGPWIKDIIKKIENNILLGRLKNDNNEIIKFIKEL 412
>gi|19572329|emb|CAD19096.1| polynucleotide adenyltransferase [Stigmatella aurantiaca]
Length = 423
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 93/410 (22%), Positives = 160/410 (39%), Gaps = 22/410 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++++L L + +VGG VRD L ++ +D D+A++ LP V F KVIPT
Sbjct: 14 PILDVLQRLRELGFAVFLVGGCVRDILRGVAPKDFDVASSALPQEVQGAFK----KVIPT 69
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++TT RS+ T D D RRDFTINA+ D
Sbjct: 70 GIQHGTVTVVIGGNHVEVTTFRSEGDYLDGRRPSSVTFERDITQDLSRRDFTINAMAYDP 129
Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GG+ DL R I+ + R ED LR LR RF A G +
Sbjct: 130 LGRELVDPFGGMTDLHARLIRCVRSPIERFSEDGLRPLRAVRFAAVLGFTLDPATRDAIP 189
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
++ ER+ E KLL + + + G+ + ++ +
Sbjct: 190 PTLPVFR-KVALERVREEFVKLLLSPRAELGLSLLVETGLLEAFLPELSSAGDEAARMAR 248
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
A Q +++ L ++ + +A + P ++ + ++
Sbjct: 249 AAVQGAPAEVEIRLAALLADLVRG-SQARDIALRLKFPTKVADTVGLLVEHAALEERTEQ 307
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC------FILQVLSDIIHWKKP--- 361
E +V A L+ LA+ + + + + + L + K P
Sbjct: 308 AEP--ALRRLLAQVGPALLEPLLAVARSRVEARQPERLPSVLRLQERLRTLAAAKPPLTS 365
Query: 362 -LFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
LTG D++ GI P +VG + ++ E L LLR
Sbjct: 366 KELALTGKDIMAALGIGPSPQVGEATRFLLEAVLDDPALNESERLKDLLR 415
>gi|325956656|ref|YP_004292068.1| tRNA CCA-pyrophosphorylase [Lactobacillus acidophilus 30SC]
gi|325333221|gb|ADZ07129.1| tRNA CCA-pyrophosphorylase [Lactobacillus acidophilus 30SC]
Length = 405
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 84/373 (22%), Positives = 151/373 (40%), Gaps = 16/373 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F K+ I T
Sbjct: 14 AMPVLRTLEDAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKELFDKS----IDTG 69
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D
Sbjct: 70 IKHGTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDMH 129
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G ++D G+ DL+N I+ +G+ R ED LR++R RF + E ++ A
Sbjct: 130 GDIVDLFNGIEDLKNHIIRAVGNPEKRFHEDALRMMRAVRFMSQL-EFKLEEKTEQAIKD 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ LK +S ERI E K+ A + L QV
Sbjct: 189 NHELLKKISVERIREEFVKMGLGPFSRQAFQI---FLDTQLSEDVPDFAGKKDLLQVYPQ 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ SL I+++ ++I + + + + +
Sbjct: 246 LKFSPTMETSLWAVIIILLKVSNENISKFMRDWKNSNAMTEKVEQIIKMFDLIADHVPTD 305
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ G+ ++I + + L + ++ + + G ++K
Sbjct: 306 Y--ELFEAGEDIIINTIDVADIL----GQPVSSEALVDRYLALPIKTPSELAVDGRFLIK 359
Query: 373 YGIPPGKKVGNIL 385
G+ PG ++G +
Sbjct: 360 RGMRPGAQLGRTI 372
>gi|300934368|ref|ZP_07149624.1| tRNA nucleotidyltransferase [Corynebacterium resistens DSM 45100]
Length = 504
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 89/469 (18%), Positives = 164/469 (34%), Gaps = 65/469 (13%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
++ L + + +VGG+VRD+L+ D+D T P +++ + K+
Sbjct: 35 QNATLQPLARAFHGAGFSLYLVGGSVRDALLGRLSHDLDFTTDARPAQIIEVLEPLAEKI 94
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYA 129
T I YGT+ + R +ITT R+D R V F + D +RRDF +NA+
Sbjct: 95 WDTGIEYGTVSALVRGAMLEITTFRADQYDGDSRNPDVTFGDSLEGDLIRRDFRVNAMAL 154
Query: 130 ----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
D + D +GGL+D + +D LR+LR RF + E +
Sbjct: 155 ELRPDGDHQFQDPLGGLDDAAAGLLDTPDSPEISFNDDPLRMLRACRFVSQL-EFAVAPR 213
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
A + +K ++ ER+ E+NKL+ P + + M + G+ + + ++
Sbjct: 214 VGAAMKEMAPQIKRITVERVAVELNKLMLGAAPWDGLDLMVDSGLAEFVLPELPALKMTQ 273
Query: 239 ---------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK------------- 276
SL L +E E W+ D LR L+ K
Sbjct: 274 DEHKQHKDVYRHSLRVLRNAVELEAKNNWEPDLELRMASLLHDVGKPATRAFTESGAVTF 333
Query: 277 ---------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI---------PEIKKLFY 318
+K R+ + + S + Y
Sbjct: 334 HQHEVVGAKMTRKRLQKLKYSRQHVKDISQLVFLHMRFHGYSDGGAQGEPSWTDSAVRRY 393
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGD 368
+ ++ +L + + + + + + L G+
Sbjct: 394 VNDAGDLLPRLHLLVRADCTTRNKRKADRLQRTYDGLEQRIAELQEQEDLAAVRPDLDGN 453
Query: 369 DVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+++ +PPG +VG + K+ ++ L +E+ LR A Q
Sbjct: 454 AIMEILDLPPGPQVGKAWAYLKELRLDRG-PLPREEAIAELRAWWAEQQ 501
>gi|260583471|ref|ZP_05851219.1| poly A polymerase [Granulicatella elegans ATCC 700633]
gi|260158097|gb|EEW93165.1| poly A polymerase [Granulicatella elegans ATCC 700633]
Length = 403
Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 87/412 (21%), Positives = 162/412 (39%), Gaps = 22/412 (5%)
Query: 2 VSIVQHK-WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
+SI + + + + ++ L ++ VGG+VRD L++ + D+DIAT+ P V
Sbjct: 1 MSIQKEPLFL---EALPVMQQLVDAGYEAYFVGGSVRDMLLHKPISDVDIATSATPQEVK 57
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSL 118
IFS + I +GT+ +I K+ +++TT R++ + R+ F R + D
Sbjct: 58 EIFSH----TVDVGIEHGTVMVIHHKEGYEVTTFRTEEGYEDFRHPDKVTFVRSLEEDLK 113
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDFTINAL ++ID+ G+ DL + I+ +GDA R ED LR+ R RF G
Sbjct: 114 RRDFTINALAIGIDDQLIDFFDGIGDLERQCIRCVGDAKERFNEDALRMFRAVRFVGQLG 173
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ I+ + A K L ++ ER+ E K++++ +A+ ++ +
Sbjct: 174 FQ-IEENTKNAISLLKMNLSKVAVERMKVEFEKMIQSSYRKDALK-LFVETGLYQACPLF 231
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
L + +L V K + + K + E ++
Sbjct: 232 DGKGEILLKLAEFPIKEMSVLQAWIL--FVDELKLSDKEVTHLLKSWKSSNEQIRDVLVG 289
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ +K Y + +L I + +
Sbjct: 290 YKTYRARKEEEWNFFLAYDCSYEVASEVEQLLI------AQNKSTSIKGLEATYQSLPIR 343
Query: 359 KKPLFPLTGDDVVK-YGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
L G D+++ + G +G +L ++ + S + E L +
Sbjct: 344 SMNDIQLNGHDIIRILKLEKKGPIIGQVLKTVEKMILEQSIENDAEILEAYV 395
>gi|326383888|ref|ZP_08205572.1| tRNA adenylyltransferase [Gordonia neofelifaecis NRRL B-59395]
gi|326197347|gb|EGD54537.1| tRNA adenylyltransferase [Gordonia neofelifaecis NRRL B-59395]
Length = 484
Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 87/455 (19%), Positives = 162/455 (35%), Gaps = 56/455 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L + + +VGG+VRD+++ D+D+ T P + I V T
Sbjct: 28 LTPLADSFAARGHELYLVGGSVRDAVLGRLAGDLDLTTDARPAVIAEILRSWGDAVWDTG 87
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD--- 130
I +GT+ +ITT RSD R V F D +RRDF INA+
Sbjct: 88 IDFGTVSAAKAGATVEITTFRSDIYDQQSRNPVVTFGDTLDGDLIRRDFRINAMAVRLLP 147
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ D + G+ DL I +D LR+LR RF + G + L A
Sbjct: 148 GGGQEFCDPLDGMTDLLAGIIDTPAAPESSFNDDPLRMLRGVRFVSQLGF-RMSDRVLEA 206
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL------ 243
+ ++ +++ERI E++K + ++PL A+ + G+ + I ++ + L
Sbjct: 207 TRSMAGQIERITAERIRVELDKTICGEHPLEAVDLLVETGLAELIIPEIPGMKLTIDEHH 266
Query: 244 -------DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281
L+ + +A + D +LR+ L+ K +
Sbjct: 267 QHKDVYQHSLTVLQQAIDLETGDPDPVLRWAALLHDIGKPATRRHEDGGGVSFHHHEVVG 326
Query: 282 -------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
+ P+ + + + Y+ ++ +L
Sbjct: 327 AKMVRKRMRALKYPKAVVDDVSQLVFLHLRFHGYGDGMWTDSAVRRYVTDAGPLLDRLHK 386
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + + D+ + L G+ +++ G+PPG
Sbjct: 387 LVRADCTTRNKRRARRLQETYDDLERRIAVLREAEDLDRVRPDLDGNAIMELLGLPPGPL 446
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
VG + K+ ++S +S+ED LR+ A
Sbjct: 447 VGEAWRYLKELRLDSG-PMSREDAEAALREWWAQR 480
>gi|116491042|ref|YP_810586.1| tRNA nucleotidyltransferase/poly(A) polymerase [Oenococcus oeni
PSU-1]
gi|116091767|gb|ABJ56921.1| tRNA nucleotidyltransferase/poly(A) polymerase [Oenococcus oeni
PSU-1]
Length = 399
Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 106/399 (26%), Positives = 174/399 (43%), Gaps = 22/399 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I +L+ L ++ VGG+VRD+++ + D+DI T LP+ + RIF
Sbjct: 10 KEAIPVLNCLENHGYQAYFVGGSVRDAILRRPIHDVDITTDALPNEMKRIFKTADNYA-- 67
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVV-FTRDWKADSLRRDFTINALYAD 130
+GT + K +++TT R D R+ K V FT++ K D RRDFTINA +
Sbjct: 68 -GEKHGTDLVFLNGKKYEVTTFRIDGKYLDNRHPKNVSFTKNLKEDLSRRDFTINAFAMN 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
Q+GK+ DY GLNDL+ + I+ +GDA R ED LRILR FRF + K + +
Sbjct: 127 QEGKLFDYFSGLNDLKKKIIRTVGDAKQRFSEDALRILRAFRFSSQLDFKIEEETLRASQ 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ + I + ERI+ E +KLL KNP ++ MY+ GI + L +
Sbjct: 187 MIKENLNDIAT-ERIFVEFSKLLAGKNPQRSLRQMYDLGIVDFLPGHELITDQSDLFRNY 245
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
Q I+ + S + S+ + + +++ + N K +
Sbjct: 246 IGIQSSSHAINWT--RFIFFSNLRESSLTKYLGSWKMSNQLKKQIFKSINLLEKDKPSKL 303
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ A L+I +AL + D +L ++ + G D+
Sbjct: 304 ------------DLFDAGLEISIALSA--IKRDDRNNLLSDYENLAIHDLSELDINGIDL 349
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
GIP G G I+ K++ I +++ L +
Sbjct: 350 KNIGIPVGPIYGKIIEDLKEKVILGKINNNKQRLLKEAK 388
>gi|262051628|ref|ZP_06023848.1| hypothetical protein SA930_1905 [Staphylococcus aureus 930918-3]
gi|259160469|gb|EEW45493.1| hypothetical protein SA930_1905 [Staphylococcus aureus 930918-3]
Length = 400
Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 80/413 (19%), Positives = 159/413 (38%), Gaps = 32/413 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 63 VGKEHGTINVVFNAENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF +
Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSFDIATETFEAMR 182
Query: 191 IKAKKGL-----KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----VQEI 241
I+ +I+ + ++ N L ++ F+ + ++ + I
Sbjct: 183 IQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYMPYFEHLDMNQINVTEAI 242
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L+ L ++ + + + L + ++ + A + +E + ++
Sbjct: 243 DLELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIITKEQLKMFVYDYDT 302
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + + ++ K + G + +I L I + L + +
Sbjct: 303 HLIKNVMVAADVLKANDIQGHEPLIVNL----------------QTIDETLHRLPMHNRK 346
Query: 362 LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 347 DMMVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399
>gi|323439540|gb|EGA97261.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus O11]
gi|323442221|gb|EGA99852.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus O46]
Length = 400
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 92/410 (22%), Positives = 162/410 (39%), Gaps = 26/410 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 7 EQARPILEQIQDDGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A
Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSF-DIATETFEAM 181
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+K LS ERI E+ KL+ N + H+ + F + + ++Q++
Sbjct: 182 RTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNY-MPYFEHLDMNQINVTE 240
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ I S+ K I K L + + ++
Sbjct: 241 PIDLELLIAIVSV-----------KFDINYSLKPLKLSNRQVKDINQYIQIMNVLPSIIT 289
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPLFP 364
E K+F D +I + + + N + I + L + +
Sbjct: 290 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHHLTMHDRKDMM 349
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G ++ G + ++L + + + ++ + +
Sbjct: 350 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399
>gi|32471688|ref|NP_864681.1| poly A polymerase [Rhodopirellula baltica SH 1]
gi|32397059|emb|CAD72363.1| poly A polymerase [Rhodopirellula baltica SH 1]
Length = 427
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 88/416 (21%), Positives = 175/416 (42%), Gaps = 22/416 (5%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
I+ ++ + I++ L + + GG VRD+L+ +D D+AT P+ V
Sbjct: 13 TEILNSP--EAAEAVRIITELKDAGFVAVLAGGCVRDALLGRKPKDFDVATDATPESVRE 70
Query: 62 IFSKTRYKVIPTSISYGTIKIICRK-----------KYFDITTLRSD-LITDGRYAKVVF 109
+F K + S+G I ++ + ++ T R+D +DGR V
Sbjct: 71 VFGKRN--TLAFGESFGVIGVLPPRSAVTEEPSAKLMPTEVATFRADGNYSDGRRPDSVT 128
Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168
D +AD++RRDFTIN ++ D + KVIDYVGG+ DL ++ IG A R ED LR+L
Sbjct: 129 YGDAEADAMRRDFTINGMFYDLFESKVIDYVGGIQDLEKGHLRTIGKAVQRFEEDKLRML 188
Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228
R RF G +I+ A + ++S ERI +E+ +++ + + + +
Sbjct: 189 RAVRFATTLGF-SIEYKTFAAIQNHASDISVVSGERIGAEMRRVMTSSASDFGLETLVDT 247
Query: 229 GIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
G+ ++ ++ ++ + S+ I+ + +++ L + + + + + + L
Sbjct: 248 GLALHVWPQLRSMNWTEYSRAIQTTKHRSFEVAMALA-LFHLPGDSIQCLRLLFNDWKLS 306
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
R + + +L + D+ I +
Sbjct: 307 VAERRAIEAALTHAQTITQCDGLPWSRLQPILIDE---DAETIVATARALAPKSRGVARA 363
Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
+ L + P +TG D++ G+ PG + +IL + + ++ ++ L
Sbjct: 364 ARSLFGDPNKLNPPPLVTGADLIANGMRPGPEFKSILQSIRDDQLDGKLTSREDAL 419
>gi|116623706|ref|YP_825862.1| metal dependent phosphohydrolase [Candidatus Solibacter usitatus
Ellin6076]
gi|116226868|gb|ABJ85577.1| metal dependent phosphohydrolase [Candidatus Solibacter usitatus
Ellin6076]
Length = 422
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 93/418 (22%), Positives = 155/418 (37%), Gaps = 40/418 (9%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82
++ +VGG VRD L+ +D DIAT PDR+M +F + +G I +
Sbjct: 2 RGAGHQAYLVGGCVRDHLLGCKPKDYDIATDARPDRIMDLFPSSG----RVGAHFGVILV 57
Query: 83 ICRKKYFDITTLRSDLIT-DGRYAKVVFT-RDWKADSLRRDFTINALYADQQG-KVIDYV 139
++ T RSD DGR+ + V D + D LRRDFTIN L D +V+D+V
Sbjct: 58 RDVFDQVEVATFRSDHDYLDGRHPEQVRFECDPREDVLRRDFTINGLMLDPDTGRVLDFV 117
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199
G DL+ ++ IGD + R ED+LR+LR RF A G I+ A + +
Sbjct: 118 DGQGDLKRGIVRAIGDPYARFREDHLRLLRAVRFAARLGF-EIEPATFDAIRRDHALILK 176
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFEW 258
++ ERI E+ ++L + G+ ++ +V + +DQ Q V+
Sbjct: 177 VAMERIREELVRILTEGGARRGFELLDAAGMLADLLPEVAAMKGVDQPPQFHPEGDVWAH 236
Query: 259 ---------KIDSLLRFIVLISWQDKKSILS--------------------MAKKFSLPR 289
L L+ K + + R
Sbjct: 237 TLLLLEQLRNPTPTLALGALLHDVGKPPTFRVADRIRFDGHVEEGVRIAHAILTRLRFSR 296
Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI--FLALHYNNLTHQDTCF 347
E + + + K + + L L++ + N
Sbjct: 297 EEIDQVEALVENHMRFKDVHHMKESTLKRFLRLPDFEEHLELHRLDVMSSNRRLENYELA 356
Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
++ +P +TG D++ G PG + IL + + + Q E +H
Sbjct: 357 RRKLAEYSEKHLQPEPLVTGADLIGMGYQPGPQFSRILSVIEDAQLEGTIQTRGEAIH 414
>gi|269302631|gb|ACZ32731.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Chlamydophila pneumoniae LPCoLN]
Length = 410
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 107/418 (25%), Positives = 182/418 (43%), Gaps = 21/418 (5%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M +I +L L ++ VGG VRD LMN ++DIDIAT P V
Sbjct: 1 MTTIAIEA------AKKVLIKLRNAGYQAYFVGGCVRDMLMNRPLEDIDIATNASPTIVS 54
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLR 119
IF VI +++G I + + F++ T RSD DGR+ + + D+LR
Sbjct: 55 TIFPD----VISIGVAFGIIVVKQDGRLFEVATFRSDGEYKDGRHPDRIIFSSMREDALR 110
Query: 120 RDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+N +Y + KV D+V G D+ + I+ IG R ED LRILR RF + G
Sbjct: 111 RDFTVNGMYYDPFEDKVFDFVEGTRDIEKKVIRAIGHPRLRFSEDKLRILRAIRFSSSLG 170
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ +A + +S ERIW E+ K+L+ + P A+ + + IF ++
Sbjct: 171 FTLDPTTERAIIKEAPALVNSVSPERIWQELKKMLKRQ-PHGALSLLLKLKVLIFIFPEL 229
Query: 239 QEISLDQLSQVIEAEQVFEWKIDS-LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
++I L IE + F +L + L +++ + + + + S
Sbjct: 230 RDIPYSLLRTTIEFARKFNPTHFPEILFLLPLFQGVSEEAATVAFGRLRISNKELKLIES 289
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS---- 353
++ + + S + + L++F AL + Q +Q L
Sbjct: 290 WYEALPHFQNQSSNRVF-WAHFLASPTAPLFLELFSALQKDPSRQQHFISRVQELESRLE 348
Query: 354 -DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
I+ K ++ D++ GI PG+ +G++L + I + L +E + LL++
Sbjct: 349 QFILRIKTSSPVVSAPDLIAKGITPGRLLGDLLREAEILSIENEC-LDKEKILLLLQE 405
>gi|41410430|ref|NP_963266.1| PcnA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41399264|gb|AAS06882.1| PcnA [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 480
Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats.
Identities = 83/452 (18%), Positives = 166/452 (36%), Gaps = 55/452 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
H L + S + + +VGG+VRD+L+ D+D T P++V +I + +
Sbjct: 21 HAPMLRELGSAFDAAGHQLYLVGGSVRDALLGRLSPDLDFTTDARPEQVQQILRRWADNL 80
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
T I +GT+ + + +ITT R+D R +V F + D +RRDFT NA+
Sbjct: 81 WDTGIEFGTVGVGKGDRRLEITTFRADTYDQVSRNPQVRFGNRLEDDLVRRDFTANAMAV 140
Query: 130 DQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ +D +GGL LR R + +D LR+LR RF + G +
Sbjct: 141 RITPDGPGEFLDPLGGLAALRQRVLDTPATPEESFGDDPLRMLRAARFVSQLGF-TVAPR 199
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
A + L +S+ER+ +E++KL+ +P+ I + + G+ + + ++
Sbjct: 200 VREAIERMAPQLARISAERVAAELDKLVLGDDPVAGIDLLVHSGMGEVVLPEIGGMQMAI 259
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------- 281
+++ L+ + +A + + D +LR+ L+ K +
Sbjct: 260 DEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPNGGVSFHHH 319
Query: 282 -----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIA 327
+ +++ + + + Y+ ++
Sbjct: 320 EVVGAKMVRKRLRALKYSKQMIDDVSQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGPLLP 379
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIP 376
+L + + + + + L G+ +++ GIP
Sbjct: 380 RLHKLVRADCTTRNKRRAARLHASYDRLEARIAELAAQEDLARVRPDLDGNQIMEILGIP 439
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G +VG K+ + E LL
Sbjct: 440 AGPQVGEAWRFLKELRLERGPLDPDEATAELL 471
>gi|283470670|emb|CAQ49881.1| cca-adding enzyme (trnanucleotidyltransferase) (trna
adenylyl-/cytidylyl-transferase)
(trnacca-pyrophosphorylase) (trna-nt) [Staphylococcus
aureus subsp. aureus ST398]
Length = 400
Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats.
Identities = 81/408 (19%), Positives = 158/408 (38%), Gaps = 32/408 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS IP
Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSH----TIP 62
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ + +++TT R D + R + V F RD D RRDFT+NA+ D
Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ DY G D+ NR I+ +G A R ED LR++R RF + +
Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAAERFQEDALRMIRCLRFQSQLSFEIATETFEAMR 182
Query: 191 IKAKKGL-----KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----VQEI 241
+ +I+ + E+ N L ++ F+ + ++ + I
Sbjct: 183 TQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNYMPYFEHLDMNQINVTEPI 242
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L+ L ++ + + + L + ++ + A + +E + ++
Sbjct: 243 DLELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIITKEQLKMFVYDYDT 302
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
N + + ++ K + G + +I L I + L + +
Sbjct: 303 NLIKNVMVAADVLKANDIQGHEPLIVNL----------------QTIDETLHHLPMHNRK 346
Query: 362 LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G ++ G + ++L + + + ++ +
Sbjct: 347 DMMVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWV 394
>gi|118586879|ref|ZP_01544313.1| polynucleotide adenylyltransferase [Oenococcus oeni ATCC BAA-1163]
gi|118432711|gb|EAV39443.1| polynucleotide adenylyltransferase [Oenococcus oeni ATCC BAA-1163]
Length = 399
Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats.
Identities = 101/399 (25%), Positives = 170/399 (42%), Gaps = 22/399 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I +L+ L ++ VGG+VRD+++ + D+DI T LP+ + RIF
Sbjct: 10 KEAIPVLNCLENHGYQAYFVGGSVRDAILRRPIHDVDITTDALPNEMKRIFKTADNYA-- 67
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVV-FTRDWKADSLRRDFTINALYAD 130
+GT + K +++TT R D R+ K V FT++ K D RRDFTINA +
Sbjct: 68 -GEKHGTDLVFLNGKKYEVTTFRIDGKYLDNRHPKNVSFTKNLKEDLSRRDFTINAFAMN 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
Q+G++ DY GLNDL+ + I+ +GDA R ED LRILR FRF + K + +
Sbjct: 127 QEGELFDYFSGLNDLKKKIIRTVGDAKQRFSEDALRILRAFRFSSQLDFKIEEETLRASQ 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ + I + ERI+ E +KLL KNP ++ MY+ GI + + S +
Sbjct: 187 MIKENLNDIAT-ERIFVEFSKLLAGKNPQRSLRQMYDLGIVDFLPGHKL---ITDQSDLF 242
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ D++ + +Y + ++
Sbjct: 243 RNYIGIQSSSDAI-----------NWTRFIFFSNLRESSLTKYLGSWKMSNQLKKQIFKS 291
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ + + A L+I +AL + D +L ++ + G D+
Sbjct: 292 INLLEKDKPSKLDLFDAGLEISIALSA--IKRDDRNNLLSDYENLAIHDLSELDINGIDL 349
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
GIP G G I+ K++ I +++ L +
Sbjct: 350 KNIGIPVGPIYGKIIEDLKEKVILGKINNNKQRLLKEAK 388
>gi|15618754|ref|NP_225040.1| Poly A polymerase [Chlamydophila pneumoniae CWL029]
gi|15836378|ref|NP_300902.1| poly A polymerase [Chlamydophila pneumoniae J138]
gi|16752194|ref|NP_445561.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39]
gi|33242205|ref|NP_877146.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183]
gi|4377160|gb|AAD18983.1| Poly A Polymerase [Chlamydophila pneumoniae CWL029]
gi|7189937|gb|AAF38800.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39]
gi|8979219|dbj|BAA99053.1| poly A polymerase [Chlamydophila pneumoniae J138]
gi|33236716|gb|AAP98803.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183]
Length = 410
Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats.
Identities = 107/418 (25%), Positives = 182/418 (43%), Gaps = 21/418 (5%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M +I +L L ++ VGG VRD LMN ++DIDIAT P V
Sbjct: 1 MTTIAIEA------AKKVLIKLRNAGYQAYFVGGCVRDMLMNRPLEDIDIATNASPTIVS 54
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLR 119
IF VI +++G I + + F++ T RSD DGR+ + + D+LR
Sbjct: 55 TIFPD----VISIGVAFGIIVVKQDGRLFEVATFRSDGEYKDGRHPDRIIFSSMREDALR 110
Query: 120 RDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+N +Y + KV D+V G D+ + I+ IG R ED LRILR RF + G
Sbjct: 111 RDFTVNGMYYDPFEDKVFDFVEGTRDIEKKVIRAIGHPRLRFSEDKLRILRAIRFSSSLG 170
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ +A + +S ERIW E+ K+L+ + P A+ + + IF ++
Sbjct: 171 FTLDPTTERAIIKEAPALVNSVSPERIWQELKKMLKRQ-PYGALSLLLKLKVLIFIFPEL 229
Query: 239 QEISLDQLSQVIEAEQVFEWKIDS-LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
++I L IE + F +L + L +++ + + + + S
Sbjct: 230 RDIPYSLLRTTIEFARKFNPTHFPEILFLLPLFQGVSEEAATVAFGRLRISNKELKLIES 289
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS---- 353
++ + + S + + L++F AL + Q +Q L
Sbjct: 290 WYEALPHFQNQSGNRVF-WAHFLASPTAPLFLELFSALQKDPSRQQHFISRVQELESRLE 348
Query: 354 -DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
I+ K ++ D++ GI PG+ +G++L + I + L +E + LL++
Sbjct: 349 QFILRIKTSSPVVSAPDLIAKGISPGRLLGDLLREAEILSIENEC-LDKEKILLLLQE 405
>gi|114762223|ref|ZP_01441691.1| polyA polymerase family protein [Pelagibaca bermudensis HTCC2601]
gi|114545247|gb|EAU48250.1| polyA polymerase family protein [Roseovarius sp. HTCC2601]
Length = 363
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 115/388 (29%), Positives = 179/388 (46%), Gaps = 27/388 (6%)
Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
+L + + VGG VR++L V D+DIAT PD V+ + K +PT I +GT+
Sbjct: 1 MLEQAGHAAYAVGGCVRNALFGAPVADVDIATDARPDTVVALAVAAGLKPVPTGIDHGTV 60
Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140
++ ++TT R+D+ TDGR A V ++ D D+ RRDFT+NALYAD +G+V+D +
Sbjct: 61 TVVAEGIGHEVTTFRADVETDGRRAVVRYSDDIAEDAARRDFTMNALYADARGEVLDPLN 120
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL--K 198
GL DL R ++FI DA RI EDYLRILRFFRF A YG+ + D + A
Sbjct: 121 GLPDLEARRVRFIRDAGERIREDYLRILRFFRFHAWYGDPDAGVDEEALAGIATNLDGLA 180
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
LS+ER+ EI +LL A +P ++ M G+ + L L + EQ
Sbjct: 181 ALSAERVGHEITRLLSASDPAPSVAVMEQVGVLARVLPGATSRMLAPLVAL---EQSAAL 237
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
D + R VL + A+ L + + L ++ + + Y
Sbjct: 238 PPDPMRRLAVLGYFD--------ARSLRLSKARQRHLEAYQSLISAGTGYTEIA-----Y 284
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG 378
+G+ + + A + + + I P+ D++ G
Sbjct: 285 RHGEAMARDVAALRSASLGQPMPE-------DLEAQIATGAGATLPIRPRDLMPEF--EG 335
Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHH 406
+G+ L ++ WI S F L++ DL
Sbjct: 336 PALGDELRARERRWIESGFTLTKADLLK 363
>gi|313897877|ref|ZP_07831418.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Clostridium sp. HGF2]
gi|312957412|gb|EFR39039.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Clostridium sp. HGF2]
Length = 454
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 91/446 (20%), Positives = 171/446 (38%), Gaps = 48/446 (10%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+DS + ++L L + ++ +VGG VRD LM + D DI T P VM +F + Y+
Sbjct: 4 INDSQIQSVLQLFSTIHKEAWLVGGCVRDMLMGRELHDYDITTDATPYEVMALFQEKGYR 63
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINAL 127
VIPT + +GT+ ++ + + +ITT R++ + FT D D RRDFT+NA+
Sbjct: 64 VIPTGLKHGTVTVLVQDEPIEITTYRTESAYTNHRSPEAVRFTPDIDEDLKRRDFTMNAI 123
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ D G D+ +TI+ +G A R+ ED LRILR RF I+ + +
Sbjct: 124 AWHPKRGFHDPYHGQADIAKKTIRCVGKASERMQEDALRILRALRFHC-TLHFTIEEETV 182
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
A L +S ERI E N++L P + + + + I ++ + +
Sbjct: 183 QAIRTHAHLLSYISRERIREEFNRILLQDYP-DTLQLLKEMRVLDTIAAGYTKLMNKEQN 241
Query: 248 QVIEAEQVFEWKIDSLLR-------------------------------FIVLISWQDKK 276
VF +L + + +
Sbjct: 242 NPWHIYDVFTHTDVALNHTKGMALEGKLAIIFHDTGKPACETLDADGISHYYGHAQKSVE 301
Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL--- 333
KK ++ + T +++ + +++ A L + +
Sbjct: 302 LARCWLKKLHYDNRTIQRVLRCIAYHDYNLTPKKSTLRRYLSKFDNQLEDALLALDVQLA 361
Query: 334 ---------ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNI 384
A + + Q +L + ++ + G D++ +G+ GK++G
Sbjct: 362 DQLAKNPEPAANGVRIIRQCKELLLHMHAEEEPLSLQTLAVNGRDMMDFGL-CGKQIGTA 420
Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRK 410
L + + +++ L L +
Sbjct: 421 LHMLLDYAMQDPSRNTKKQLIEELNR 446
>gi|254391445|ref|ZP_05006647.1| RNA nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064]
gi|294813723|ref|ZP_06772366.1| RNA nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064]
gi|326442144|ref|ZP_08216878.1| RNA nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064]
gi|197705134|gb|EDY50946.1| RNA nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064]
gi|294326322|gb|EFG07965.1| RNA nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064]
Length = 482
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 80/454 (17%), Positives = 162/454 (35%), Gaps = 53/454 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + + +VGG+VRD+L+ D+D T P+ V+RI +
Sbjct: 27 APVADDLARRFQEAGFRLALVGGSVRDALLGRLGNDLDFTTDARPEDVLRIMRPWADSIW 86
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+
Sbjct: 87 DVGIAFGTVGSQKGGYQIEVTTYRSEAYDRTSRKPEVAYGDSIEDDLVRRDFTVNAMAVA 146
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + ID GL DL + ++ G +D LR++R RF A ++ + + A
Sbjct: 147 LPEKEFIDPHNGLEDLAAQVLRTPGTPEESFSDDPLRMMRAARFAAQLDF-DVAPEVVEA 205
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----- 244
++I+S+ER+ E+NKL+ + +P + + + G+ ++ ++ + L+
Sbjct: 206 MKDMAGRIEIVSAERVREELNKLILSAHPRKGLALLVDSGLAAQVLPELPALRLESDEHH 265
Query: 245 --------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-------------------- 276
L+ + +A + D +LR L+ K
Sbjct: 266 RHKDVYEHSLTVLEQAIALEGNGPDLVLRLAALLHDIGKPRTRRFESDGRVSFHHHEVVG 325
Query: 277 --SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
E+ + + E Y+ ++ +L
Sbjct: 326 AKMTKKRMTALKYSNELVKDVSRLVELHLRFHGYGSGEWTDSAVRRYVRDGGPLLDRLHK 385
Query: 332 FLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + + L G+ + K G+ PG
Sbjct: 386 LTRSDCTTRNKRKAAALSRTYDGLEVRIAELKEQEELDAIRPDLDGNQIQKILGVGPGPV 445
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+G H + + + + +E LR A+
Sbjct: 446 IGKAYAHLLELRLENG-PMEEEAAIAALRSWWAA 478
>gi|300859512|ref|YP_003784495.1| tRNA nucleotidyltransferase [Corynebacterium pseudotuberculosis
FRC41]
gi|300686966|gb|ADK29888.1| tRNA nucleotidyltransferase [Corynebacterium pseudotuberculosis
FRC41]
gi|302207195|gb|ADL11537.1| tRNA nucleotidyltransferase [Corynebacterium pseudotuberculosis
C231]
gi|302331756|gb|ADL21950.1| tRNA nucleotidyltransferase [Corynebacterium pseudotuberculosis
1002]
gi|308277448|gb|ADO27347.1| tRNA nucleotidyltransferase [Corynebacterium pseudotuberculosis
I19]
Length = 533
Score = 176 bits (445), Expect = 7e-42, Method: Composition-based stats.
Identities = 89/451 (19%), Positives = 168/451 (37%), Gaps = 55/451 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
L + L K + +VGG+VRD+L++ D+D T P+ VM I + V
Sbjct: 67 SPLLAPLAQLFQKRGHRLYLVGGSVRDALLDELGNDLDFTTDARPETVMEILNDYTSVVW 126
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ + +ITT RSD R +V F + D +RRDF +NA+ +
Sbjct: 127 DTGIEFGTVSAEKDGQQIEITTFRSDVYDGKTRNPEVQFGDSLEGDLIRRDFRVNAMAVE 186
Query: 131 QQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
D V G++DL + + +D LR+LR RF + E ++
Sbjct: 187 VHPTGEMTFHDPVKGMDDLVKKVLDTPSLPEQSFNDDPLRMLRAARFVSQL-EFSVADRV 245
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------- 238
A + + ++ ERI E++KLL + P + I M + G+ + I ++
Sbjct: 246 DNAMTQMADQIDRITVERIQVELDKLLCGRAPWDGIDLMVDTGLAERIIPEIPALRLTQD 305
Query: 239 -----QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------ 281
+++ L L+ + +A + E D +LR+ L+ K +
Sbjct: 306 EHRQHKDVYLHSLTVLRQAMEQEEDGPDVVLRWASLMHDCGKPDTRAFTDEGKVSFHHHE 365
Query: 282 ----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAK 328
+ +++ + + S E Y+ +++K
Sbjct: 366 IVGARIMRARMRALKYSKQMVNDVSDLIRLHMRFHGFSEGEWTDSAVRRYVTDAGPLLSK 425
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + + + + ++ L G++++K + P
Sbjct: 426 LHKLVRADCTTRNKKKAARLQRTYDHLEERIAEIAEREDLQRVRPDLDGNEIMKILDLQP 485
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G VG K+ + S+E + L
Sbjct: 486 GPDVGRAWSFLKELRLERGPLPSEEAIAELK 516
>gi|255324026|ref|ZP_05365151.1| tRNA adenylyltransferase [Corynebacterium tuberculostearicum SK141]
gi|255298883|gb|EET78175.1| tRNA adenylyltransferase [Corynebacterium tuberculostearicum SK141]
Length = 478
Score = 176 bits (445), Expect = 7e-42, Method: Composition-based stats.
Identities = 88/451 (19%), Positives = 164/451 (36%), Gaps = 55/451 (12%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
+ +VGG+VRD+L+ D+D T P+ V I + V T I +G
Sbjct: 30 VEKFAARGYSLYLVGGSVRDALLGRLGNDLDFTTPARPEVVKEILDEWAETVWDTGIDFG 89
Query: 79 TIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQG 133
T+ + + +ITT RSD R +VV+ + D +RRDF NA+ D
Sbjct: 90 TVSAAYKGQQIEITTFRSDSYDGQSRNPEVVYGDTLEGDLVRRDFKANAMAIELLADASF 149
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
K D + GL+D+ +R + +D LR+LR RF + E + + A
Sbjct: 150 KFHDPLHGLHDIADRVLDTPDKPEISFHDDPLRMLRAARFASQL-EFRVADRVVEAMRDM 208
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------------QE 240
++ ++ ER+ E++KL+ P + I + + GI IF ++ ++
Sbjct: 209 AGEIQRITVERVQVELDKLICGTAPWDGIDLLVSTGIADYIFPEIPALRMTADEHAQHKD 268
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------- 281
+ L + +A E D +LR+ L+ K
Sbjct: 269 VYAHSLKVLSQAMDQEEDGPDLVLRWAALLHDIGKPDTFDNTDGKVSFHHHEVVGAKLAR 328
Query: 282 --AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIFLALH 336
+K P+ + + + Y+ ++ +L +
Sbjct: 329 KRLRKLKYPKATTESIGQLVYLHMRFHGFGENQWTDSAVRRYVTDAGDLLPRLHKLVRAD 388
Query: 337 YNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385
+ + + + + L G+++++ G+ PG +VG
Sbjct: 389 CTTRNAKKARRLQRTYDQLEERIEEIGRKEDLARVRPDLDGNEIMEILGLQPGPEVGQAW 448
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ K+ + L +ED LR+ S Q
Sbjct: 449 SYLKELRLEHG-PLEREDAIAKLREWWDSKQ 478
>gi|159046029|ref|YP_001534823.1| CCA-adding enzyme [Dinoroseobacter shibae DFL 12]
gi|157913789|gb|ABV95222.1| CCA-adding enzyme [Dinoroseobacter shibae DFL 12]
Length = 382
Score = 176 bits (445), Expect = 7e-42, Method: Composition-based stats.
Identities = 129/410 (31%), Positives = 183/410 (44%), Gaps = 30/410 (7%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M + ++L +L + VGG VR++L+ V D DIAT LP +V
Sbjct: 1 MSVLASR--LSHPGAQHVLGVLTGAGHAAYFVGGTVRNALIGAPVTDFDIATAALPQQVQ 58
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ KV+ T I +GT+ ++ K F++TT R D+ TDGR A V F +D D+ RR
Sbjct: 59 TLAEDAGIKVVATGIDHGTLTLVLDKTPFEVTTFRRDVATDGRRATVAFAKDVAEDARRR 118
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
DFT+NALYA G+V+D +GGL DL R ++FI D RI EDYLRILRFFRF A YG+
Sbjct: 119 DFTMNALYATAAGEVVDPLGGLPDLEARKVRFIDDPEARIREDYLRILRFFRFTAWYGDP 178
Query: 181 --NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
ID++GL A GL+ LS+ER+ +E+ KLL A +P A+ M GI +
Sbjct: 179 AKGIDAEGLTACAALADGLQTLSTERVTAELLKLLAAPDPAPAVASMGQSGILSRVLPGA 238
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +L L + E + D L R L A L + L +
Sbjct: 239 ADTALAPLVHL---EPTLDLAPDGLRRLAALGGD---------AGGLRLSKVQARHLATL 286
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
++ L G + L + A + SDI
Sbjct: 287 -----RSESGGNDTALHLGQRLGPETAAEVLALRAASLGQPIPP-------NARSDIARG 334
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
FP+ D+ G +G L + W S F+L +E L L
Sbjct: 335 AAATFPVRAADLPAD--LEGPAIGAALGILEAAWRASDFRLDREALLARL 382
>gi|157803201|ref|YP_001491750.1| poly(A) polymerase [Rickettsia canadensis str. McKiel]
gi|157784464|gb|ABV72965.1| poly(A) polymerase [Rickettsia canadensis str. McKiel]
Length = 403
Score = 176 bits (445), Expect = 7e-42, Method: Composition-based stats.
Identities = 112/402 (27%), Positives = 186/402 (46%), Gaps = 23/402 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
ILSLLN+ ++ ++GG VRD+L+ DIDI TT++P V+ I S+ + K
Sbjct: 10 ISSKGYKKILSLLNEKG-QARLIGGCVRDALLKKDSYDIDIDTTLIPSEVINILSRAKIK 68
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
IPT + +GTI I K+ F+ITTLR D+ +GR+AK+VFT D+ D+ RRDFTINAL
Sbjct: 69 TIPTGLKFGTITAILDKEKFEITTLRKDIECNGRHAKLVFTNDFAEDAARRDFTINALSY 128
Query: 130 DQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
K+ DY G DL+ + FIG+A +RI EDYLRILRFFRF ++Y +
Sbjct: 129 CPFKNKIYDYFDGFKDLQQEKVVFIGEALNRIKEDYLRILRFFRFSSYYANQLDHEGLKA 188
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ + +NK++ +K + M+ GI + IF +Q + Q
Sbjct: 189 CKVLKYGLKTLSRERIKSE-MNKIIVSKRAAQILEAMFEIGILELIF-SIQNYKIKFFEQ 246
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ + + LL ++ L + + + ++S N + +
Sbjct: 247 ANDFKLELATRYALLLYNQKDLN-------LKVFLDWKFSKYEAMQILSITNFLNDTECN 299
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ K + A L + ++ ++ P F + G+
Sbjct: 300 MKKIWLEKNNY--------KEYLLAASIIGKLDYLQVKEFIRKYDAVLR---PKFQVNGN 348
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+++ I K++G L + K WI F+ S+ +L ++ +
Sbjct: 349 NLLNMNIEK-KEIGAKLEYLKNFWIEHDFKPSKLELLRVISR 389
>gi|311740246|ref|ZP_07714077.1| tRNA adenylyltransferase [Corynebacterium pseudogenitalium ATCC
33035]
gi|311304629|gb|EFQ80701.1| tRNA adenylyltransferase [Corynebacterium pseudogenitalium ATCC
33035]
Length = 478
Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats.
Identities = 88/451 (19%), Positives = 163/451 (36%), Gaps = 55/451 (12%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
+ +VGG+VRD+L+ D+D T P+ V I + V T I +G
Sbjct: 30 VEKFAARGYSLYLVGGSVRDALLGRLGNDLDFTTPARPEVVKEILDEWAETVWDTGIDFG 89
Query: 79 TIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQG 133
T+ + + +ITT RSD R +VV+ + D +RRDF NA+ D
Sbjct: 90 TVSAAYKGQQIEITTFRSDSYDGQSRNPEVVYGDTLEGDLVRRDFKANAMAIELLADASF 149
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
K D + GL D+ +R + +D LR+LR RF + E + + A
Sbjct: 150 KFHDPLHGLQDIADRVLDTPDKPEISFHDDPLRMLRAARFASQL-EFRVADRVVEAMRDM 208
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------------QE 240
++ ++ ER+ E++KL+ P + I + + GI IF ++ ++
Sbjct: 209 AGEIQRITVERVQVELDKLICGTAPWDGIDLLVSTGIADYIFPEIPALRMTADEHAQHKD 268
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------- 281
+ L + +A E D +LR+ L+ K
Sbjct: 269 VYAHSLKVLSQAMDQEEDGPDLVLRWAALLHDIGKPDTFDNTDGKVSFHHHEVVGAKLAR 328
Query: 282 --AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIFLALH 336
+K P+ + + + Y+ ++ +L +
Sbjct: 329 KRLRKLKYPKATTESIGQLVYLHMRFHGFGENQWTDSAVRRYVTDAGDLLPRLHKLVRAD 388
Query: 337 YNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385
+ + + + + L G+++++ G+ PG +VG
Sbjct: 389 CTTRNAKKARRLQRTYDQLEERIEEIGRKEDLARVRPDLDGNEIMEILGLQPGPEVGQAW 448
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ K+ + L +ED LR+ S Q
Sbjct: 449 SYLKELRLEHG-PLEREDAIAKLREWWDSKQ 478
>gi|118465833|ref|YP_884405.1| tRNA adenylyltransferase [Mycobacterium avium 104]
gi|118167120|gb|ABK68017.1| tRNA adenylyltransferase [Mycobacterium avium 104]
Length = 480
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 84/452 (18%), Positives = 166/452 (36%), Gaps = 55/452 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
H L + S + + +VGG+VRD+L+ D+D T PD+V +I + +
Sbjct: 21 HAPMLRELGSAFDAAGHQLYLVGGSVRDALLGRLSPDLDFTTDARPDQVQQILRRWADNL 80
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
T I +GT+ + + +ITT R+D R +V F + D +RRDFT NA+
Sbjct: 81 WDTGIEFGTVGVGKGDRRLEITTFRADTYDQVSRNPQVRFGNRLEDDLVRRDFTTNAMAV 140
Query: 130 DQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ +D +GGL LR R + +D LR+LR RF + G +
Sbjct: 141 RITPDGPGEFLDPLGGLAALRQRVLDTPATPEESFGDDPLRMLRAARFVSQLGF-TVAPR 199
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
A + L +S+ER+ +E++KL+ +P+ I + + G+ + + ++
Sbjct: 200 VREAIERMAPQLARISAERVAAELDKLVLGDDPVAGIDLLVHSGMGEVVLPEIGGMQMAI 259
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------- 281
+++ L+ + +A + + D +LR+ L+ K +
Sbjct: 260 DEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPNGGVSFHHH 319
Query: 282 -----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIA 327
+ +++ + + + Y+ ++
Sbjct: 320 EVVGAKMVRKRLRALKYSKQMVDDVSQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGPLLP 379
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIP 376
+L + + + + + L G+ +++ GIP
Sbjct: 380 RLHKLVRADCTTRNKRRAARLQASYDRLEARIAELAAQEDLARVRPDLDGNQIMEILGIP 439
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G +VG K+ + E LL
Sbjct: 440 AGPQVGEAWRFLKELRLERGPLDPDEATAELL 471
>gi|226309497|ref|YP_002769459.1| tRNA nucleotidyltransferase [Rhodococcus erythropolis PR4]
gi|226188616|dbj|BAH36720.1| putative tRNA nucleotidyltransferase [Rhodococcus erythropolis PR4]
Length = 483
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 82/459 (17%), Positives = 168/459 (36%), Gaps = 56/459 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
L + + + +VGG+VRD+++ D+D T P++V + K
Sbjct: 26 SDVLNPLGERFAEAGHELFLVGGSVRDAILGRFSGDLDFTTDARPEKVQALLKGWVDKQW 85
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GTI I + +ITT R+D R V + D +RRDFT+NA+
Sbjct: 86 DTGIEFGTISAIKHGQEIEITTFRADAYDRVSRNPIVEYGTTLADDLVRRDFTVNAMAMK 145
Query: 131 Q----QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+D + G++ L + + +D LR+LR RF + G +++
Sbjct: 146 IGADGSYTFVDPLNGMDALLAGELDTPSAPENSFNDDPLRMLRAARFVSQLGF-TLNNRV 204
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-- 244
A + ++ +++ER+ E+NK++ P++ I M + G+ + +V ++ L+
Sbjct: 205 FEAIKEMASQIERITAERVQVELNKMILGMYPVDGINMMVDSGLAAYVLPEVPQMKLEID 264
Query: 245 -----------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------- 277
L+ + +A + E D +LR+ L+ K
Sbjct: 265 EHHQHKDVYQHSLTVLQQAIDLEEGDPDLVLRWAALLHDIGKPDTKRNEPGGGVSFHHHE 324
Query: 278 ------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAK 328
+ + +++ + + + Y+ ++ +
Sbjct: 325 VVGAKLVRKRMRALKFSKQMVDDVSQLVFLHLRFHGYGKGQWTDSAVRRYVTDAGELLPR 384
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + + DI + L G+ +++ IP
Sbjct: 385 LHKLVRADCTTRNKRRAAQLQATYDDIEERIARIAEQEDLARVRPDLDGNAIMELLNIPA 444
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G +VG K+ ++ L +++ L K A+ Q
Sbjct: 445 GPQVGKAWTFLKELRLDRG-PLERDEAEAELLKWWATQQ 482
>gi|182419878|ref|ZP_02951116.1| cca-adding enzyme [Clostridium butyricum 5521]
gi|237668756|ref|ZP_04528740.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Clostridium butyricum E4 str. BoNT E BL5262]
gi|182376247|gb|EDT73831.1| cca-adding enzyme [Clostridium butyricum 5521]
gi|237657104|gb|EEP54660.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Clostridium butyricum E4 str. BoNT E BL5262]
Length = 438
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 103/431 (23%), Positives = 176/431 (40%), Gaps = 42/431 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
SD+ I+++L + + +VGG VRD L+N D DI T P+ V R+F KVI
Sbjct: 9 SDVQYIINVLIENGYEGYMVGGCVRDLLINREPNDYDITTNAKPEVVARLFD----KVIL 64
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++ K +++TT R D R+ + F D K D RRDFTINA+ +
Sbjct: 65 TGLKHGTVTVVINKVQYEVTTYREDGEYKDSRHPENVKFVTDIKNDLSRRDFTINAMAYN 124
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++ +IDY GL+DL+N+ I+ +G+ R ED LR+LR RF K +S
Sbjct: 125 KEKGLIDYFDGLSDLKNKVIRTVGNPEKRFTEDSLRMLRAVRFAVQLDFKIEESIIQSIK 184
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
I K I +L+ N + ++ I K + D+ + ++ I
Sbjct: 185 ILNKNLEFISKERIREEFNKIILKNP---NGLKLLHECSILKYVADDLDKAYDYYINDKI 241
Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDK-------------------KSILSMAK 283
++E K D LR +L K + +
Sbjct: 242 NCYNLYEHLILSSCNIKKDLSLRLTMLFHDLGKLKDWNNKLEKVDNIFIESACIAEKILR 301
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA-LHYNNLTH 342
+ + + IKKL + ++ +K+ A + N+
Sbjct: 302 SLKYDNGTIKKVKTLITY-MHSDLEDKVSIKKLLNIIDVELFEDLIKVKKAHIMSENIEE 360
Query: 343 QDTCFILQVLSDI----IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398
I ++ DI ++ + G+D++K G+ GK VG +L + + I +
Sbjct: 361 VKFLNIEKLYCDIIEKNECFRIRDMRINGEDIIKIGVKKGKDVGIMLNYLLCKVIEDNNL 420
Query: 399 LSQEDLHHLLR 409
++ L L
Sbjct: 421 NYKKKLLELAE 431
>gi|291059673|gb|ADD72408.1| polynucleotide adenylyltransferase [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 494
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 97/470 (20%), Positives = 168/470 (35%), Gaps = 75/470 (15%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L + + +VGGAVRD L+N S D D+AT P+RV +F + +P
Sbjct: 24 PLLREVSERFIRAGFCIYVVGGAVRDFLLNRSAHDWDLATDAPPERVRMLFR----RTVP 79
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYAD 130
T I +GT+ I+ R + TT R + R F + D RRDFT+NA A
Sbjct: 80 TGIEHGTVTILFRGHSIECTTFRVESDYSDRRHPDSVCFAARIEDDLARRDFTVNAFAAA 139
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
G++ID GG DLRN I +GDAH R ED LR LR RF A +I++ A
Sbjct: 140 LPSGEIIDVCGGYADLRNGLICSVGDAHARFSEDALRPLRAVRFAAQLSF-SIEARTREA 198
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----- 244
I + +S ER+ E++K+L P A+ M G+ +F + ++
Sbjct: 199 IIALRAHTARISRERVRDELSKMLCTPRPSIALRLMEETGLLHTLFPALAQVCGRNEGEE 258
Query: 245 -------------------------------------QLSQVIEAEQVFEWKIDSLLRFI 267
+L+ ++ + S
Sbjct: 259 KETQDSLQVSPQQRRDARTFAACAFAACDRVPAELAVRLAALLFPLAHYRTLPASGTGAA 318
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNC--NFNQKTLSIPEIKKLFYLYGDKVM 325
+ I + + P + + + S +++ G +
Sbjct: 319 LFICPPALAEARELLRGLKYPNYLTAQVCHLVAHARFTPHECWSEGTLRRFVVTVGTTQL 378
Query: 326 IAKLKIFLALHYNN------------LTHQDTCFILQVLSDI---IHWKKPLFPL----- 365
+ + A ++ ++ + + + P+
Sbjct: 379 ESLCVLRRAYLADDDYRISAQPGVSCENAREGKKMQEQFEIFVTRVRRVAAQLPVHGIRD 438
Query: 366 ---TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
G D++ GIPPG +G+IL + + ++ L ++++
Sbjct: 439 LAVNGRDLIAQGIPPGPTIGHILNALFDMVLMQPSRNTRPQLLEHAQEIV 488
>gi|15639262|ref|NP_218711.1| polynucleotide adenylyltransferase (pcnA) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189025504|ref|YP_001933276.1| polynucleotide adenylyltransferase [Treponema pallidum subsp.
pallidum SS14]
gi|3322543|gb|AAC65258.1| polynucleotide adenylyltransferase (pcnA) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189018079|gb|ACD70697.1| polynucleotide adenylyltransferase [Treponema pallidum subsp.
pallidum SS14]
Length = 478
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 97/470 (20%), Positives = 168/470 (35%), Gaps = 75/470 (15%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L + + +VGGAVRD L+N S D D+AT P+RV +F + +P
Sbjct: 8 PLLREVSERFIRAGFCIYVVGGAVRDFLLNRSAHDWDLATDAPPERVRMLFR----RTVP 63
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYAD 130
T I +GT+ I+ R + TT R + R F + D RRDFT+NA A
Sbjct: 64 TGIEHGTVTILFRGHSIECTTFRVESDYSDRRHPDSVCFAARIEDDLARRDFTVNAFAAA 123
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
G++ID GG DLRN I +GDAH R ED LR LR RF A +I++ A
Sbjct: 124 LPSGEIIDVCGGYADLRNGLICSVGDAHARFSEDALRPLRAVRFAAQLSF-SIEARTREA 182
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----- 244
I + +S ER+ E++K+L P A+ M G+ +F + ++
Sbjct: 183 IIALRAHTARISRERVRDELSKMLCTPRPSIALRLMEETGLLHTLFPALAQVCGRNEGEE 242
Query: 245 -------------------------------------QLSQVIEAEQVFEWKIDSLLRFI 267
+L+ ++ + S
Sbjct: 243 KETQDSLQVSPQQRRDARTFAACAFAACDRVPAELAVRLAALLFPLAHYRTLPASGTGAA 302
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNC--NFNQKTLSIPEIKKLFYLYGDKVM 325
+ I + + P + + + S +++ G +
Sbjct: 303 LFICPPALAEARELLRGLKYPNYLTAQVCHLVAHARFTPHECWSEGTLRRFVVTVGTTQL 362
Query: 326 IAKLKIFLALHYNN------------LTHQDTCFILQVLSDI---IHWKKPLFPL----- 365
+ + A ++ ++ + + + P+
Sbjct: 363 ESLCVLRRAYLADDDYRISAQPGVSCENAREGKKMQEQFEIFVTRVRRVAAQLPVHGIRD 422
Query: 366 ---TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
G D++ GIPPG +G+IL + + ++ L ++++
Sbjct: 423 LAVNGRDLIAQGIPPGPTIGHILNALFDMVLMQPSRNTRPQLLEHAQEIV 472
>gi|229491197|ref|ZP_04385025.1| tRNA adenylyltransferase [Rhodococcus erythropolis SK121]
gi|229321935|gb|EEN87728.1| tRNA adenylyltransferase [Rhodococcus erythropolis SK121]
Length = 483
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 83/459 (18%), Positives = 167/459 (36%), Gaps = 56/459 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
L + + +VGG+VRD+++ D+D T P++V + K
Sbjct: 26 SDVLNPLGERFAAAGHELFLVGGSVRDAILGRFSGDLDFTTDARPEKVQALLKGWVDKQW 85
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GTI I + +ITT R+D R V + D +RRDFT+NA+
Sbjct: 86 DTGIEFGTISAIKHGQEIEITTFRADAYDRVSRNPIVEYGTTLADDLVRRDFTVNAMAMK 145
Query: 131 Q----QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+D + G++ L + + +D LR+LR RF + G +++
Sbjct: 146 IGADGSYTFVDPLNGMDALLAGELDTPSAPENSFNDDPLRMLRAARFVSQLGF-TLNNRV 204
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-- 244
A + ++ +++ER+ E+NKL+ P++ I M + G+ + +V ++ L+
Sbjct: 205 FEAIKEMASQIERITAERVQVELNKLMLGMYPVDGINMMVDSGLAAYVLPEVPQMKLEID 264
Query: 245 -----------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------- 277
L+ + +A + E D +LR+ L+ K
Sbjct: 265 EHHQHKDVYQHSLTVLQQAIDLEEGDPDLVLRWAALLHDIGKPDTKRNEPGGGVSFHHHE 324
Query: 278 ------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAK 328
+ + +++ + + + Y+ ++ +
Sbjct: 325 VVGAKLVRKRMRALKFSKQMVDDVSQLVFLHLRFHGYGKGQWTDSAVRRYVTDAGELLPR 384
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + + DI + L G+ +++ IP
Sbjct: 385 LHKLVRADCTTRNKRRAAQLQATYDDIEERIARIAEQEDLARVRPDLDGNAIMELLNIPA 444
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G +VG K+ ++ L +++ L K A+ Q
Sbjct: 445 GPQVGKAWTFLKELRLDRG-PLERDEAEAELLKWWATQQ 482
>gi|154686492|ref|YP_001421653.1| tRNA CCA-pyrophosphorylase [Bacillus amyloliquefaciens FZB42]
gi|166233842|sp|A7Z5Z6|CCA_BACA2 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|154352343|gb|ABS74422.1| Cca [Bacillus amyloliquefaciens FZB42]
Length = 396
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 89/397 (22%), Positives = 166/397 (41%), Gaps = 17/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL L K ++ VGGAVRDS M + D+DIAT+ P+ V R+F + +
Sbjct: 8 ALPILHHLMKAGHQAYFVGGAVRDSYMKRKIGDVDIATSASPNEVERLFK----RTVDVG 63
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GT+ ++ + +++TT R S+ R V F D RRD TINA+ +
Sbjct: 64 KEHGTVIVLWEDETYEVTTFRAESEYKDYRRPEAVRFITSLSEDLKRRDLTINAMAMSAE 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++DY GG +D+ + I+ +G+ R ED LR++R RF + G ++ + A IK
Sbjct: 124 GELLDYFGGAHDIGQKLIRTVGNPEDRFREDALRMMRAVRFMSQLGFL-LEKETREAVIK 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
++ L +S ER E KLL+ + AI M G+ + ++ +S + + +
Sbjct: 183 DRELLAHVSVERKTVEFEKLLQGASSQEAIQTMVQTGLIQ----ELPGLSGYEQQMLEAS 238
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
F R+ L+ + + A ++ +
Sbjct: 239 GFPFSSLDAREERWAALLLFLGLCPKSAEAFL----KQWKLPGKVIKKAMQIISVYPAQL 294
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ Y G + + + +KI + + + Q + + + ++G D+++
Sbjct: 295 EAEAMYRAG-EALFSAVKIGMLKKHKTIDEQKLKEVQSLYEQLPIKSLRDLDISGADLME 353
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
GK V L ++ + + D+ L
Sbjct: 354 LRNRRAGKWVAEELRRIEEAVLAGKLPNRKHDIKEWL 390
>gi|302552677|ref|ZP_07305019.1| tRNA adenylyltransferase [Streptomyces viridochromogenes DSM 40736]
gi|302470295|gb|EFL33388.1| tRNA adenylyltransferase [Streptomyces viridochromogenes DSM 40736]
Length = 481
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 78/456 (17%), Positives = 156/456 (34%), Gaps = 53/456 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +VGG+VRD+L+ D+D T P V++I V
Sbjct: 27 APVADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPQDVLKIVRPWADAVW 86
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+
Sbjct: 87 EVGIAFGTVGAHKGGYQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVA 146
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + ID GGL DL +R ++ G +D LR++R RF A +
Sbjct: 147 LPEKEFIDPHGGLEDLASRVLRTPGTPEESFSDDPLRMMRAARFAAQLDFEVAPEVVAAM 206
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ---- 245
++I+S+ER+ E+NKL+ + +P + + G+ + ++ + L++
Sbjct: 207 EG-MAGRIEIVSAERVRDELNKLILSPHPRKGLTLLVETGLADRVLPELPALRLERDEHH 265
Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-------------------- 276
L + +A + D LR L+ K
Sbjct: 266 RHKDVYDHTLIVLEQAMALEGDGPDLTLRLAALLHDIGKPRTRRFEKDGRVSFHHHEVVG 325
Query: 277 --SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
E+ + + E Y+ ++ +L
Sbjct: 326 AKMTKKRMAALKYSNELVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPLLDRLHK 385
Query: 332 FLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + + L G+ +++ G+ PG
Sbjct: 386 LTRSDCTTRNKRKAAALSRAYDGLEERIASLQEEEELDSIRPDLDGNQIMEILGVGPGPV 445
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+G H + + + + + L++ A +
Sbjct: 446 IGRAYKHMLELRLENG-PMEPDAAVTALKEWWAEQE 480
>gi|307330000|ref|ZP_07609152.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Streptomyces violaceusniger Tu 4113]
gi|306884376|gb|EFN15410.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Streptomyces violaceusniger Tu 4113]
Length = 496
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 89/466 (19%), Positives = 165/466 (35%), Gaps = 63/466 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + + +VGG+VRD+L+ D+D T PD V++I V
Sbjct: 32 SPVADDLARHFQQAGFRLALVGGSVRDALLGRLGNDLDFTTDARPDEVLKIVRPWADAVW 91
Query: 72 PTSISYGTIKIICR---------KKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRD 121
I++GT+ +ITT RS+ R +V + + D +RRD
Sbjct: 92 DVGIAFGTVGCRKDMAAGSGSDQSFQIEITTYRSEAYDRTSRKPEVSYGDSIEEDLVRRD 151
Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NA+ Q + ID GL DL R ++ G +D LR++R RF A
Sbjct: 152 FTVNAMAVALPQKEFIDPHHGLEDLAARVLRTPGTPEESFSDDPLRMMRAARFAAQLDF- 210
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+ + + A + I+S+ER+ E+NKL+ A +P + + G+ + ++
Sbjct: 211 EVAPEVVAAMTSMADRIDIVSAERVRDELNKLILADHPREGLRLLVETGLADRVLPELPA 270
Query: 241 ISLDQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKK----------- 276
+ L++ L+ + +A + D +LR L+ K
Sbjct: 271 LRLERDEHHRHKDVYEHSLTVLDQAIDLEAEGPDLVLRLAALLHDIGKPKTRRFEKDGRV 330
Query: 277 -----------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGD 322
K E+ + + E Y+
Sbjct: 331 SFHHHEVVGAKMTKYRMTKLKYSNELIKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDA 390
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVVK 372
++ +L + + + + L G++++K
Sbjct: 391 GPLLDRLHKLTRSDCTTRNKRKATALSRAYDGLEERIAQLQEQEELDSIRPDLDGNEIMK 450
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI-ASSQ 416
GIPPG +VG H + + + +E L++ A S+
Sbjct: 451 ILGIPPGPQVGKAYKHLLEMRLEHG-PMERETAIATLQEWWDAQSE 495
>gi|320009733|gb|ADW04583.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Streptomyces flavogriseus ATCC 33331]
Length = 481
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 83/456 (18%), Positives = 166/456 (36%), Gaps = 53/456 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +VGG+VRD+L+ D+D T P+ V++I V
Sbjct: 27 SPVADDLALRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVW 86
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+
Sbjct: 87 EVGIAFGTVGSQKDGYQIEVTTYRSEAYDRTSRKPEVSYGDSIEDDLVRRDFTVNAMAVA 146
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ ID GGL+DL R ++ G +D LR+LR RF A + D + A
Sbjct: 147 LPHKEFIDPHGGLDDLAQRVLRTPGTPEASFSDDPLRMLRAARFAAQLDF-EVAPDVVKA 205
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----- 244
++I+S+ERI E+NKLL + +P + + + G+ + ++ + L+
Sbjct: 206 MTDMAGRIEIVSAERIREELNKLLLSGHPRKGLGLLVDTGLAGHVLPELPALRLESDEHH 265
Query: 245 --------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-------------------- 276
L+ + +A + E D +LR L+ K
Sbjct: 266 RHKDVYEHSLTVLEQAIDLEEDGPDLVLRLAALLHDVGKPRTRRFEKDGRVSFHHHEVVG 325
Query: 277 --SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
+ ++ + + E Y+ ++ +L
Sbjct: 326 AKMTKKRMAELKYSNDMVKDVSKLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLDRLHK 385
Query: 332 FLALHYNNLTHQDTCFILQ----------VLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + L + + L G+++++ + PG
Sbjct: 386 LTRSDCTTRNKRKANALSRTYDGLEERIAQLQEQEELEAIRPDLDGNEIMRILDVGPGPV 445
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+G + + + + +E L++ A+ +
Sbjct: 446 IGKAYAFLLELRLENG-PMEREAAVAALKEWWAAQE 480
>gi|296141887|ref|YP_003649130.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Tsukamurella paurometabola DSM 20162]
gi|296030021|gb|ADG80791.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Tsukamurella paurometabola DSM 20162]
Length = 486
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 81/459 (17%), Positives = 171/459 (37%), Gaps = 56/459 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
L+ + + + +VGG+VRD+L+ D+D T P++V + +
Sbjct: 28 SDVLVPLGTRFADAGHELYLVGGSVRDALLGRLTSDLDFTTDARPEQVQALLRGWADAMW 87
Query: 72 PTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ + +ITT R R V F + + D +RRDFTINA+
Sbjct: 88 DTGIEFGTVSAAFHDQQIEITTYRAEAYDRVTRNPVVKFGENLRDDLVRRDFTINAMAVR 147
Query: 131 Q----QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
D + GL+ L I +D LR+LR RF + G + +
Sbjct: 148 IGRDGAEDFQDPLNGLDALLAGVIDTPATPEESFSDDPLRMLRAARFVSQLGF-AVAARV 206
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLD 244
A + +++ER+ +E++KL+ ++P++ IV + + G+ + + ++ ++++D
Sbjct: 207 QRAMTDMAPEIDRITAERVRAELDKLILGEHPVDGIVLLVDTGLAERVIPEIPGMKLAID 266
Query: 245 QLSQ-----------VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------ 281
+ Q + +A + E D +LR+ L+ K +
Sbjct: 267 EHHQHKDVFWHSMTVLQQAIDLEESDPDLILRWAALLHDIGKPATRRHEPNGGVSFHHHE 326
Query: 282 ----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAK 328
+ + P+ + + + + Y ++ +
Sbjct: 327 VVGAKMVRKRMRALAYPKSVIEDVAQLVFLHLRFHGYGDGQWTDSAVRRYATDAGPLLPR 386
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + + + + L G+ +++ G+PP
Sbjct: 387 LHKLVRADCTTRNKRRAARLQATYDGLEERIAKIAAQEDLARVRPDLDGNAIMELLGLPP 446
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G +VG + K+ ++ + +++ L K A+ Q
Sbjct: 447 GPQVGAAWKYLKELRLDRG-PMDRDEAEAELAKWWAAQQ 484
>gi|32267207|ref|NP_861239.1| poly(A) polymerase [Helicobacter hepaticus ATCC 51449]
gi|32263260|gb|AAP78305.1| poly(A) polymerase [Helicobacter hepaticus ATCC 51449]
Length = 468
Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 102/443 (23%), Positives = 171/443 (38%), Gaps = 38/443 (8%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ------DIDIATTI 54
M + + +++ IL L ++ IVGG VRD L+ + D DI T+
Sbjct: 36 MKTHIFTPTLP-KEVLYILESLQSAGYEAYIVGGCVRDMLLAQNSHIPYVINDYDITTSA 94
Query: 55 LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRD 112
LP VM++F+ I T + YGTI ++ + +++TT R D + FTR
Sbjct: 95 LPQEVMKLFAH----TIHTGLKYGTISVLIESQSYEVTTFRIDGSYINARSPKNVTFTRS 150
Query: 113 WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
D RRDFTINAL +ID VGGL DL+++ I +GDA R+ ED LRILR R
Sbjct: 151 LAQDLQRRDFTINALAYAPCSGLIDEVGGLADLQHKRIVCVGDAFARLNEDILRILRALR 210
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK------NPLNAIVHMY 226
F + G + + K I L A I +
Sbjct: 211 FSSTLGFEIDFHTKEAIFSLSSKVCLIAKERIRVEFTKLLCGAWVKVVLDEFRFVISEIL 270
Query: 227 NGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286
+ + + +L L + + + F+ + IL K +
Sbjct: 271 SQMREIIANNTLWQHTLSILDNLTPRSHTL-----AWVAFLYHTDELKARDILQSLKFDT 325
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLF--YLYGDKVMIAKLKIFLALHYNNLTHQD 344
++ L+ + N ++ + G+ + LK+ +A+ T
Sbjct: 326 YNKDYICSLLVYVKKPLNNNLTTLKTMLVDMGGRKKGEAMFKDMLKLKVAVINAQDTADK 385
Query: 345 TCFILQVLSDIIHW-----------KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
+ Q+L I + L G D++ G+P GK++G IL QE +
Sbjct: 386 AQKL-QMLDSIHSLLECVLASSVPLELKELCLNGRDLIYIGVPKGKRIGEILHFLHQEVL 444
Query: 394 NSSFQLSQEDLHHLLRKLIASSQ 416
+ ++E L + + + +
Sbjct: 445 HERVSNTKEALLSKAQAFLQTKK 467
>gi|258511621|ref|YP_003185055.1| tRNA cytidylyltransferase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478347|gb|ACV58666.1| tRNA cytidylyltransferase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 407
Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 73/406 (17%), Positives = 147/406 (36%), Gaps = 15/406 (3%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ +L + +VGGAVRD L+ + D+D+AT+ P+ V +F+ + + T
Sbjct: 6 PAREVMEVLQNAGYAAYLVGGAVRDLLLGRTPSDLDVATSARPEDVRSLFA----RTLDT 61
Query: 74 SISYGTIKIICRKKYFDITTLR-SDLITDGRYAKV-VFTRDWKADSLRRDFTINALYADQ 131
I +GT+ + + ++TT R DGR F D +AD RRDFTINA+ D
Sbjct: 62 GIRHGTVSVWSAGCWIEVTTFRAEGPYGDGRRPDFVRFVDDVEADLARRDFTINAMALDL 121
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+++D G DL R ++ +GD R ED LR++R RF + +
Sbjct: 122 DGRLVDPFDGRGDLARRLLRAVGDPVARFREDGLRLVRAVRFSVQLDLTCDPATEAALAE 181
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVI 250
A I + + + + + +++ + +
Sbjct: 182 TADAIRPIALERIGRELVRLSHAPWHAH--LQTLASTPLWRRRGEPLAWLEQGFPWLASQ 239
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + + A+ + ++ +
Sbjct: 240 GRFSLAPPAGWPSVALWFVGVDNGPLRARRFAEALAYGKDAARRIERAVQLAQAWARGVD 299
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
++ Y G ++ L ++ + + + W + L DD+
Sbjct: 300 AASPEMLYEAGRASAEMAARMISFLARGDVF--EVARWKRAIRAQPLWDRSDLALPADDL 357
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ G+ GK++G ++ + Q + L R+++A +
Sbjct: 358 IAMGLR-GKEIGECQKSLVRQILRGEIQNQPDALR---REVMARRK 399
>gi|260654684|ref|ZP_05860174.1| polyA polymerase family protein [Jonquetella anthropi E3_33 E1]
gi|260630700|gb|EEX48894.1| polyA polymerase family protein [Jonquetella anthropi E3_33 E1]
Length = 435
Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 83/418 (19%), Positives = 150/418 (35%), Gaps = 20/418 (4%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M+S+ ++ L + +VGG +RD+LM DID+AT P V
Sbjct: 1 MISLPSS-------ARKVMDALERNGFSVFLVGGYLRDTLMGRKPGDIDLATDAKPKDVT 53
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSL 118
+F + T + +G++ ++ ++TT RS+ + + + D
Sbjct: 54 ALFGAK--YTLETGVKHGSVTVMSDGLPIEVTTFRSEGAYADKRHPNSVSFLTNVTEDLR 111
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDFT+NA+ + + +ID VGG DL+ R I+ +G+ R ED LRILR RF +
Sbjct: 112 RRDFTVNAMAWNPEHGLIDPVGGREDLQRRRIRCVGNPDERFAEDGLRILRALRFAS-LL 170
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI-VHMYNGGIFKEIFLD 237
+ID A + L+ +S R+W E++ + P H+
Sbjct: 171 NFSIDPRADEALNRFTSSLENVSVPRVWHELSLFFQGVRPGRLFASHLPVFAAVIPELAF 230
Query: 238 VQEISLDQLSQ-------VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
+ + S + Q ++ +L + + S+ +
Sbjct: 231 LCDNSPLSFQAATDAARWLDAVPQDLPLRLAALFSAVAPDQQEAAFLAKSVLEDRLQTDR 290
Query: 291 IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
+ + E + L G + + L + L + + +
Sbjct: 291 NTRRAVQSLLKYPAIALKTPDEARALLKAVGRETALDWLGLVLPILSQQEGEGTSRILSA 350
Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
VL + + G D++ G PG +G IL E + L
Sbjct: 351 VLECNLPLDVSQLAVKGSDLIDLGCLPGPLIGEILSTLLDEVFAGRLPNERPALLRRA 408
>gi|302543982|ref|ZP_07296324.1| tRNA adenylyltransferase [Streptomyces hygroscopicus ATCC 53653]
gi|302461600|gb|EFL24693.1| tRNA adenylyltransferase [Streptomyces himastatinicus ATCC 53653]
Length = 477
Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 87/463 (18%), Positives = 163/463 (35%), Gaps = 62/463 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +VGG+VRD+L+ D+D T PD V++I V
Sbjct: 13 SPVADDLARRFQQAGFSLALVGGSVRDALLGRLGNDLDFTTDARPDEVLKIVRPWADAVW 72
Query: 72 PTSISYGTIKIICRK---------KYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRD 121
I++GT+ +ITT RS+ R +V + + D +RRD
Sbjct: 73 EVGIAFGTVGCQKEGPGDNGTHQSFQIEITTYRSEAYDRTSRKPEVSYGASIEEDLVRRD 132
Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NA+ Q + ID GL DL R ++ G +D LR++R RF +
Sbjct: 133 FTVNAMAVALPQKEFIDPHNGLEDLAARVLRTPGTPQESFSDDPLRMMRAARFASQLDF- 191
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+ + + A + I+S+ER+ E+NKL+ P + + G+ + ++
Sbjct: 192 EVAPEVVAAMKAMAGRIDIVSAERVRDELNKLVLGAYPRKGLRLLVETGLADCVLPEIPA 251
Query: 241 ISLDQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKK----------- 276
+ L++ L+ + +A + E D +LR L+ K
Sbjct: 252 LRLERDEHHRHKDVYEHSLTVLDQAMDLEENGPDLVLRLAALLHDIGKPKTRRFEKDGRV 311
Query: 277 -----------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGD 322
S K E+ + + E Y+
Sbjct: 312 SFHHHEVVGAKMTKSRMTKLKYSNELVKEVSRLVELHLRFHGYGTGEWTDSAVRRYVRDA 371
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVVK 372
++ +L + + + + + L G++++K
Sbjct: 372 GPLLDRLHKLTRSDCTTRNKRKAMALSRAYDGLEERIARLQEQEELEAIRPDLDGNEIMK 431
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
GI PG +VG H + + + ++ LR+ A+
Sbjct: 432 VLGIAPGPEVGKAYKHLLELRLEHG-PMGRDAAVAALREWWAA 473
>gi|302535590|ref|ZP_07287932.1| tRNA adenylyltransferase [Streptomyces sp. C]
gi|302444485|gb|EFL16301.1| tRNA adenylyltransferase [Streptomyces sp. C]
Length = 483
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 81/454 (17%), Positives = 161/454 (35%), Gaps = 53/454 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + + +VGG+VRD+L+ D+D T P+ V++I +
Sbjct: 27 APVADELGRRFQEAGFRLALVGGSVRDALLGRLGNDLDFTTDARPEAVLKIMRPWADSLW 86
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+
Sbjct: 87 DVGIAFGTVGAQRDGFQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMALA 146
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + +D GGL DL ++ G +D LR+LR RF A + + + A
Sbjct: 147 LPEQEFVDPHGGLEDLAAGVLRTPGTPEDSFSDDPLRMLRAARFAAQLDF-EVAPEVVSA 205
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ---- 245
++I+S+ER+ E+NKLL + +P + + + G+ + ++ + L++
Sbjct: 206 MKAMSDRIEIVSAERVQGELNKLLLSAHPRKGLGLLVDTGLADRVLPELPALRLERDEHH 265
Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-------------------- 276
L + +A + E D +LR L+ K
Sbjct: 266 RHKDVYDHSLIVLEQAIDLEEDGPDLVLRLAALLHDIGKPRTRRFESDGRVSFHHHEVVG 325
Query: 277 --SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
E+ + + E Y+ ++ +L
Sbjct: 326 AKMTKKRMTALKYSNEMVRDVSRLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLDRLHK 385
Query: 332 FLALHYNNLTHQDTCFILQ----------VLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + L + L G+++ + I PG
Sbjct: 386 LTRSDCTTRNKRKANALSRTYDGLEERIAQLQEQEELDSIRPDLNGNEIQQILEIGPGPL 445
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
VG + + + + +E L++ A+
Sbjct: 446 VGKAYAFLLELRLENG-PMDREAAVAALKEWWAA 478
>gi|282852983|ref|ZP_06262320.1| tRNA adenylyltransferase [Propionibacterium acnes J139]
gi|282582436|gb|EFB87816.1| tRNA adenylyltransferase [Propionibacterium acnes J139]
Length = 499
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 81/460 (17%), Positives = 152/460 (33%), Gaps = 59/460 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + + + + +VGG+VRD+LM D+D T PD I
Sbjct: 35 INTLFEQIPLVAELGEAFARAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILR 94
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+ + ++GTI ++TT R+D D R ++V+ + D +RRDFT
Sbjct: 95 QHTHATWDIGRAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLEDDLIRRDFT 154
Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + D GL D+ + ++ +D LR++R RF + G +
Sbjct: 155 VNAMALHAATRTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLGF-TV 213
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
++ A ++I+S+ER+ E++K L +P + + I + ++
Sbjct: 214 TNEVRAAMTDMASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALR 273
Query: 239 ------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK---------- 276
E SL L Q I+ E+ D R L+ K
Sbjct: 274 LERDEHHRHKDVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGK 333
Query: 277 ------------SILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYL 319
K P ++ + + + +++
Sbjct: 334 VSFHHHDIVGAKMARKRLKALIYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRD 393
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDD 369
GD+ + +L I + + D+ L G
Sbjct: 394 AGDQ--LERLHILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQ 451
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ I PG +VG ++ E + LL
Sbjct: 452 IMATLDIKPGPEVGKAYKFLLNLRLDEGPHTLDEAKNALL 491
>gi|314922775|gb|EFS86606.1| tRNA adenylyltransferase [Propionibacterium acnes HL001PA1]
gi|314982981|gb|EFT27073.1| tRNA adenylyltransferase [Propionibacterium acnes HL110PA3]
gi|315091487|gb|EFT63463.1| tRNA adenylyltransferase [Propionibacterium acnes HL110PA4]
gi|315105242|gb|EFT77218.1| tRNA adenylyltransferase [Propionibacterium acnes HL050PA2]
Length = 507
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 81/460 (17%), Positives = 152/460 (33%), Gaps = 59/460 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + + + + +VGG+VRD+LM D+D T PD I
Sbjct: 43 INTLFEQIPLVAELGEAFARAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILR 102
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+ + ++GTI ++TT R+D D R ++V+ + D +RRDFT
Sbjct: 103 QHTHATWDIGRAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLEDDLIRRDFT 162
Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + D GL D+ + ++ +D LR++R RF + G +
Sbjct: 163 VNAMALHAATRTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLGF-TV 221
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
++ A ++I+S+ER+ E++K L +P + + I + ++
Sbjct: 222 TNEVRAAMTDMASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALR 281
Query: 239 ------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK---------- 276
E SL L Q I+ E+ D R L+ K
Sbjct: 282 LERDEHHRHKDVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGK 341
Query: 277 ------------SILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYL 319
K P ++ + + + +++
Sbjct: 342 VSFHHHDIVGAKMARKRLKALIYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRD 401
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDD 369
GD+ + +L I + + D+ L G
Sbjct: 402 AGDQ--LERLHILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQ 459
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ I PG +VG ++ E + LL
Sbjct: 460 IMATLDIKPGPEVGKAYKFLLNLRLDEGPHTLDEAKNALL 499
>gi|294630321|ref|ZP_06708881.1| tRNA adenylyltransferase [Streptomyces sp. e14]
gi|292833654|gb|EFF92003.1| tRNA adenylyltransferase [Streptomyces sp. e14]
Length = 477
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 82/462 (17%), Positives = 163/462 (35%), Gaps = 61/462 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +VGG+VRD+L+ D+D T P+ V++I V
Sbjct: 16 APVADDLARRFEEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADAVW 75
Query: 72 PTSISYGTIKI--------ICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDF 122
I++GT+ + R ++TT RS+ R +V + + D +RRDF
Sbjct: 76 DVGIAFGTVGAQKQARVEGVERCFQIEVTTYRSEAYDRTSRKPEVSYGDSIEQDLVRRDF 135
Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T+NA+ + ID GGL DL R ++ G +D LR++R RF A
Sbjct: 136 TVNAMAVALPEKDFIDPHGGLEDLAARVLRTPGTPEESFSDDPLRMMRAARFAAQLDF-E 194
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ + + A + + ++I+S+ER+ E+NKL+ + +P + + + G+ + ++ +
Sbjct: 195 VAPEVVTAMTEMAERIEIVSAERVRDELNKLILSDHPRKGLTLLVDTGLADRVLPELPAL 254
Query: 242 SLDQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKK------------ 276
L++ L + +A + E D LR L+ K
Sbjct: 255 RLERDEHHRHKDVYDHTLIVLEQAIALEENGPDLTLRLAALLHDIGKPRTRRFEKDGRVS 314
Query: 277 ----------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDK 323
E+ + + E Y+
Sbjct: 315 FHHHEVVGAKMTKKRMTALKYSNELVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAG 374
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVVK- 372
++ +L + + + + L G+ +++
Sbjct: 375 PLLDRLHKLTRSDCTTRNKRRAAALSRAYDGLEERISQLQEQEELDAIRPDLDGNQIMEI 434
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
G+ PG VG H + + + + + L++ A
Sbjct: 435 LGVKPGPAVGQAYKHLLELRLENG-PMDYDAAVAALKEWWAE 475
>gi|269215861|ref|ZP_06159715.1| polyA polymerase family protein [Slackia exigua ATCC 700122]
gi|269130811|gb|EEZ61887.1| polyA polymerase family protein [Slackia exigua ATCC 700122]
Length = 455
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 89/441 (20%), Positives = 163/441 (36%), Gaps = 46/441 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+D+ +L LL + +VGG VRD+L D+D+AT+ V R+ +V
Sbjct: 10 STDVETLLDLLEGTGASAWVVGGYVRDALAGDDAHDVDVATSARWQDVARVCVDAGMRVY 69
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRY--AKVVFTRDWKADSLRRDFTINALYA 129
T ++GT+ + ++ ++TT R D + A V F + D RRDFT NAL
Sbjct: 70 ETGTAHGTVSVNTGRRIVEVTTYRIDGPYEDARHPASVSFVDSIELDLARRDFTFNALAY 129
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ ++D G +DL+ I+ +GD R ED LRILR RF + +G +D A
Sbjct: 130 HPERGLLDPYDGCSDLKGGIIRTVGDPMKRFREDPLRILRAVRFASRFGF-AVDDRTESA 188
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ + +++ERI +E +++L + NAI + + + +
Sbjct: 189 MRRLAPLIGGVAAERIENEFSRMLLGDHACNAI--IEWIDVIGVFIPEALPMKGFDQRTP 246
Query: 250 IEAEQVFEWKIDS--------LLRFIVLISWQDKKSIL---------------------- 279
V E + + R+ K S+
Sbjct: 247 YHIYDVLEHSAHAVGAAPARRITRYAAFFHDIGKPSVFTVDDEGIGHAKGHPQAGEAIAR 306
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI-------- 331
++ L + + + + + ++++ G V + + +
Sbjct: 307 KALQRLRLKATDIDAICTLVALHQDIVPATPRGVRRMLNRMGGDVTLFRELLDVKRADAA 366
Query: 332 ---FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
+ + VL D ++ + G+DV+ GIP G VG L
Sbjct: 367 AHAPDHRDRGAQADEVESVLEDVLKDRSAFRIADLQIDGNDVMACGIPCGPGVGAALRAA 426
Query: 389 KQEWINSSFQLSQEDLHHLLR 409
E ++ ++ L L
Sbjct: 427 LDEVMDDRIPNERDALLSFLD 447
>gi|149198773|ref|ZP_01875816.1| putative poly(A) polymerase [Lentisphaera araneosa HTCC2155]
gi|149138209|gb|EDM26619.1| putative poly(A) polymerase [Lentisphaera araneosa HTCC2155]
Length = 385
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 107/387 (27%), Positives = 168/387 (43%), Gaps = 14/387 (3%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
IVGGAVRD L+ + V DIDIA+ I P + YK T I +GT+ ++
Sbjct: 9 FGKDIYIVGGAVRDRLLGIDVVDIDIASAIHPYDFKDLSKSLGYKTFDTGIEHGTVTVLI 68
Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
K ++ TT R+D+ DGR A V F++ + D RRDFTINA+ + K+ID G ND
Sbjct: 69 DGKPYEHTTFRTDVSCDGRNANVSFSKTIEEDLSRRDFTINAIALLGK-KIIDPFNGQND 127
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
L+N+ +K +G A R EDYLRI+R RF + + A A K + +S ER
Sbjct: 128 LKNKILKTVGTAEERFSEDYLRIIRAARFASRLKMSIDTDLLIAAKELAPKITQHVSVER 187
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264
I E K + + +Y+ I +F ++ ++L E + D
Sbjct: 188 ISDEFKKAQG--HAEEFLKVLYSMNILDVLFDSTKDHYANEL---WWEEVGRAAQYDGET 242
Query: 265 RFIVLISWQ-DKKSILSMAKKFSLPREIRYFLISFFNC--NFNQKTLSIPEIKKLFYLYG 321
F L+ DK + S+ +++ L R I F FN S+ + ++ G
Sbjct: 243 YFAALVRPSGDKNKVESICREYKLSRSIIRFSCQLVEHLAYFNTGEFSLEKSYQILKSCG 302
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381
D + + + Q+ K PL + G D+ I PG +
Sbjct: 303 DNSSRLLNYLHNVIEQTEPRPALEQTLNQLDDIDQAIKNPL--INGGDLHTMNIKPGPEF 360
Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLL 408
+IL I L++E++ + +
Sbjct: 361 RHILDRAALLQIEG---LNKEEILNKI 384
>gi|255530766|ref|YP_003091138.1| polynucleotide adenylyltransferase region [Pedobacter heparinus DSM
2366]
gi|255343750|gb|ACU03076.1| Polynucleotide adenylyltransferase region [Pedobacter heparinus DSM
2366]
Length = 468
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 78/457 (17%), Positives = 161/457 (35%), Gaps = 54/457 (11%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
++ + + ++ IVGG VRD +N +DIDI + K
Sbjct: 5 LQHPVFKSLARIADMHHIEAYIVGGYVRDIFLNRPSKDIDIVVLGNGIEFAELVGKQLQS 64
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ ++GT + + + R + +V + D LRRDFTINAL
Sbjct: 65 KVAVFKNFGTAMLKYQDLEIEFVGARKESYRSDSRKPIVENGTIEDDQLRRDFTINALAI 124
Query: 130 DQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ D G+ DL N+ I+ D +D LR++R RF ID+
Sbjct: 125 SLNKENYGQLVDPFNGIADLNNKLIRTPLDPELTFSDDPLRMMRAIRFATQLNF-TIDAA 183
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---- 241
+ A K K+ + I+S ERI E+NK++ ++ P ++++ G+ + +F + +
Sbjct: 184 AINAIKKQKERIGIVSKERITDELNKIILSEVPSIGFKYLFDTGLLQLVFPQMANLYGVD 243
Query: 242 -------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP------ 288
+ + + + D LR+ ++ K + +
Sbjct: 244 IINGKGHKDNFYHTLQVLDNICGTTSDLWLRWAAILHDIAKPATKRFEEGHGWTFHGHED 303
Query: 289 -----------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
E F+ + L+ + ++
Sbjct: 304 KGARMVPKIFAQLKLPLNEKMKFVQKLVQLHLRPIVLAQEVVTDSAVRRLLFDAGEDIES 363
Query: 332 FLALHYNNLTHQDTCFILQVLSDII-------------HWKKPLFPLTGDDVVK-YGIPP 377
+ L ++T ++ + + ++ + P++G+D+++ +G+
Sbjct: 364 LMLLCNADVTTKNEYKVKKYRNNFELVKQKLRDVEERDKIRNWQPPISGNDIMETFGLSA 423
Query: 378 GKKVGNILVHCKQEWINSSFQLS-QEDLHHLLRKLIA 413
GK+VG I ++ + + L +L K
Sbjct: 424 GKEVGLIKNAIREAILEGEITNTYDNALQFMLEKAKE 460
>gi|314965692|gb|EFT09791.1| tRNA adenylyltransferase [Propionibacterium acnes HL082PA2]
gi|315094587|gb|EFT66563.1| tRNA adenylyltransferase [Propionibacterium acnes HL060PA1]
Length = 507
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 81/460 (17%), Positives = 152/460 (33%), Gaps = 59/460 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + + + + +VGG+VRD+LM D+D T PD I
Sbjct: 43 INTLFEQIPLVAELGEAFARAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILR 102
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+ + ++GTI ++TT R+D D R ++V+ + D +RRDFT
Sbjct: 103 QHTHATWDIGRAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLEDDLIRRDFT 162
Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + D GL D+ + ++ +D LR++R RF + G +
Sbjct: 163 VNAMALHAATRTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLGF-TV 221
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
++ A ++I+S+ER+ E++K L +P + + I + ++
Sbjct: 222 TNEVRAAMTDMASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALR 281
Query: 239 ------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK---------- 276
E SL L Q I+ E+ D R L+ K
Sbjct: 282 LERDEHHRHKDVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGDK 341
Query: 277 ------------SILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYL 319
K P ++ + + + +++
Sbjct: 342 VSFHHHDIVGAKMARKRLKALIYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRD 401
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDD 369
GD+ + +L I + + D+ L G
Sbjct: 402 AGDQ--LERLHILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQ 459
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ I PG +VG ++ E + LL
Sbjct: 460 IMATLDIKPGPEVGKAYKFLLNLRLDEGPHTLDEAKNALL 499
>gi|168334095|ref|ZP_02692308.1| putative poly(A) polymerase [Epulopiscium sp. 'N.t. morphotype B']
Length = 409
Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 88/409 (21%), Positives = 165/409 (40%), Gaps = 14/409 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++I I++ L + +VGG VRD +M + D DI T+ LP + +IF +
Sbjct: 5 DEVIEIITELELAGFSAYVVGGCVRDMIMKRTPNDWDITTSALPADIKKIFE----RTYD 60
Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I++GT+ +I K+++++TT R + + R V F + D RRDFT+NA+
Sbjct: 61 TGIAHGTVTVILNKEHYEVTTYRIEKEYVNFRRPNGVEFAENIAQDLSRRDFTMNAIAYH 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+D GG D+ N+ I+ +GDA R ED LRILR RF A + +
Sbjct: 121 PHKGFVDPYGGRKDIENKIIRAVGDAKIRFNEDALRILRAVRFAAQLNFEIAEETKTAFI 180
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K + I L ++ ++ + + +L+ +++
Sbjct: 181 DKRELLKYISKERIRDEFNKICLSENLFFILNIYKWDILSYISGEIKKLFDNLETEQKLV 240
Query: 251 EAEQVFEWKIDSLLRFIVLI--SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ +V +L+ + D ++ + ++ + + +
Sbjct: 241 QLLEVMAAMPVNLISRYTALLYPLNDSDAVKHILRELKFDNQTIKNVALAIEYYIYETNF 300
Query: 309 SIP--EIKKLFYLYGDKVMIAKLKI----FLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
I E+K+L + + L I + + I +L +K
Sbjct: 301 KIDAVEMKRLLRICEVDNVRNILLIKKNKASTIEEIEYIEKLFLLIDHILEQKECYKIKD 360
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+TG+DV+K I GK++G L + + + + +L + L KL
Sbjct: 361 LAITGNDVIKQNIASGKEIGKKLEQALEFILCFPHKNTNIELINYLMKL 409
>gi|313835239|gb|EFS72953.1| tRNA adenylyltransferase [Propionibacterium acnes HL037PA2]
gi|314929206|gb|EFS93037.1| tRNA adenylyltransferase [Propionibacterium acnes HL044PA1]
gi|314970839|gb|EFT14937.1| tRNA adenylyltransferase [Propionibacterium acnes HL037PA3]
gi|328905733|gb|EGG25509.1| tRNA adenylyltransferase [Propionibacterium sp. P08]
Length = 499
Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 83/462 (17%), Positives = 152/462 (32%), Gaps = 63/462 (13%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ H + + + +VGG+VRD+LM D+D T PD I + +
Sbjct: 39 FEHIPLVAELGEAFAQTGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQRTH 98
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINAL 127
++GTI ++TT R+D D R ++V+ + D +RRDFT+NA+
Sbjct: 99 ATWDIGRAFGTIGAQINDWVVEVTTYRADAYHPDSRKPEIVYGETLEDDLIRRDFTVNAM 158
Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ D GL D+ ++ +D LR++R RF + G + D
Sbjct: 159 ALHAATRTFSDPYAGLADIVAGVLRTPFPPERSFSDDPLRMMRAARFTSQLGF-TVTGDV 217
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------- 238
A ++I+S+ER+ E++K L +P + + GI + ++
Sbjct: 218 RAAMTDMASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTGIADYVLPELPALRLERD 277
Query: 239 --------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-------------- 276
E SL L Q I+ E+ D R L+ K
Sbjct: 278 EHHHHKDVYEHSLTVLDQSIDLEKRRGHNPDLTGRLAALMHDIGKPPTRRFEPGGKVSFH 337
Query: 277 --------SILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYLYGDK 323
K + P ++ + + + +++ GD+
Sbjct: 338 HHDVVGAKMARKRLKALAYPSQVVKDVAKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ 397
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK- 372
+ +L I + + D+ L G ++
Sbjct: 398 --LERLHILTRSDCTTRNRRKAERLEFAYDDLEARIADLTAKEELAAIRPDLDGQQIMAT 455
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQED----LHHLLRK 410
GI G +VG ++ E L ++
Sbjct: 456 LGIKSGPEVGKAYKFLLNLRLDEGPHTPDEAKSALLAWWAQQ 497
>gi|329890224|ref|ZP_08268567.1| tRNA-nucleotidyltransferase 1 [Brevundimonas diminuta ATCC 11568]
gi|328845525|gb|EGF95089.1| tRNA-nucleotidyltransferase 1 [Brevundimonas diminuta ATCC 11568]
Length = 364
Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 116/374 (31%), Positives = 183/374 (48%), Gaps = 18/374 (4%)
Query: 37 RDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRS 96
R++++ + D+DIAT + P+ V++ K +PT + +GT+ I ++ F+ITTLR
Sbjct: 2 RNAVLGAPIDDVDIATVLTPEAVVKALKAAGLKSVPTGMEHGTVTAISERQPFEITTLRR 61
Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG-GLNDLRNRTIKFIGD 155
D+ TDGR A V FT DW D+ RRDF +NALYAD G ++D G G D I F+G+
Sbjct: 62 DVSTDGRRATVAFTDDWAEDAARRDFRLNALYADADGLILDPTGAGYEDALAGRIVFVGE 121
Query: 156 AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215
RI EDYLRILRF+RFFA YG D + A +G++ LS+ER+ ++ KLL A
Sbjct: 122 PEQRIREDYLRILRFYRFFAWYGRGAPDVAAVEACAALAEGVEQLSAERVSKDLLKLLAA 181
Query: 216 KNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK 275
+P A+ M G+ + + ++L E + D +LR L+ +
Sbjct: 182 PDPRAAVRLMDQAGVLGRVAPQPESLTL--------FEAMVGISADPVLRLSALLPD-EA 232
Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335
+++ + A K L R L+ + +S E + + G + + +L A
Sbjct: 233 EAVRAAALKLRLSNAQRDRLVEAVAERIDP-AMSEAETRAAIWRAGRQAVEDRLYRAWA- 290
Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
+ D + +L+ W P P+ G D+ + G+ PG + G +L +Q WI
Sbjct: 291 -----SGADAGVVQHLLALATAWTPPKLPVGGKDLARLGLSPGPETGRLLKAFEQSWIAD 345
Query: 396 SFQL-SQEDLHHLL 408
F E L
Sbjct: 346 DFPDHGHEARLKAL 359
>gi|308174036|ref|YP_003920741.1| tRNA nucleotidyltransferase [Bacillus amyloliquefaciens DSM 7]
gi|307606900|emb|CBI43271.1| tRNA nucleotidyltransferase [Bacillus amyloliquefaciens DSM 7]
gi|328552838|gb|AEB23330.1| tRNA CCA-pyrophosphorylase [Bacillus amyloliquefaciens TA208]
gi|328912366|gb|AEB63962.1| tRNA nucleotidyltransferase [Bacillus amyloliquefaciens LL3]
Length = 396
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 91/397 (22%), Positives = 167/397 (42%), Gaps = 17/397 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL L K ++ VGGAVRDS M + D+DIAT+ P+ V R+F + +
Sbjct: 8 ALPILHHLMKAGHQAYFVGGAVRDSYMKRKIGDVDIATSASPNEVERLFE----RTVDVG 63
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GT+ ++ + + +++TT R S+ R V F D RRD TINA+ +
Sbjct: 64 KEHGTVIVLWKDETYEVTTFRAESEYKDYRRPEAVRFITSLSEDLKRRDLTINAMAMSAE 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+++DY GG +D+ + I+ +G+ R ED LR++R RF + G ++ A IK
Sbjct: 124 GELLDYFGGAHDIGKKLIRTVGNPEDRFREDALRMMRAVRFMSQLGFV-LEEKTKKAVIK 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
++ L +S ER E KLL + AI M G+ + ++ +S + + +
Sbjct: 183 DRELLAHVSVERKTVEFEKLLLGTSSNEAIQTMVQTGLIQ----ELPGLSGYEQQMLEAS 238
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E F R+ L+ + LS ++ +
Sbjct: 239 EFSFSSLDAREERWAALLLFLG----LSPKNAEPFLKQWKLPGKVIKGAVRIISVYPAQL 294
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ Y G + + + +KI + + + Q + + + ++G D+++
Sbjct: 295 EAEAMYRAG-EALFSAVKIGMLKKHKTIDEQKLKEVQSLYEQLPIKSLRDLDISGADLME 353
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ GK V L ++ + + D+ L
Sbjct: 354 FRNRRAGKWVAEELSRIEEAVLAGKLPNRKHDIKEWL 390
>gi|296271520|ref|YP_003654152.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermobispora bispora DSM 43833]
gi|296094307|gb|ADG90259.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermobispora bispora DSM 43833]
Length = 483
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 87/453 (19%), Positives = 161/453 (35%), Gaps = 57/453 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ L + +VGG VRD + +D+D+ T+ P++V+ I V
Sbjct: 22 APVADELGELFAARGHELALVGGCVRDVFLGRLGKDLDLTTSARPEQVLEIVKDWADAVW 81
Query: 72 PTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ + + +ITT R R +V F + D RRDFT+NA+
Sbjct: 82 TIGIEFGTVGVRKGDRLLEITTYRSESYDPSSRKPEVSFGDSLEGDLSRRDFTVNAMAVR 141
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+D GGL DL + ++ G +D LR+LR RF A G + + + A
Sbjct: 142 LPGYVFVDPFGGLGDLAAKVLRTPGSPEQSFDDDPLRMLRAARFAAQLGF-TVAPEVVEA 200
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ I+S+ERI E++KL+ A +P + + + G+ + ++ + L+ + +
Sbjct: 201 MTAMAGRIDIVSAERIRDELDKLICAPHPRAGLTLLVDTGLAARVLPELPNLRLE-IDEH 259
Query: 250 IEAEQVFEWK--------------IDSLLRFIVLISWQDK-------------------- 275
+ V+E D +LR+ L+ K
Sbjct: 260 HRHKDVYEHTLIVLEQAIAQETGGPDRVLRWAALLHDIGKPKTRRLEPDGRVTFHHHEVV 319
Query: 276 --KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333
+ + P+++ + + E + L+
Sbjct: 320 GAQMARKRLTELKFPKDVVADVSRLVELHLRFHGYGSGEWTDSAVRRYVRDAGHLLERLH 379
Query: 334 ALHYNNLTHQD-------------TCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGK 379
L + T ++ + L+ K L G ++ + GIPPG
Sbjct: 380 KLTRADCTTRNKRKAAALARAYDQLEERIARLAKEEELAKIRPELNGHEIQEILGIPPGP 439
Query: 380 KVGNILVHCKQEWINSSF---QLSQEDLHHLLR 409
VG ++ + ++E L R
Sbjct: 440 LVGKAYKFLLDLRMDRGLIGKEAAKEALLEWAR 472
>gi|255349096|ref|ZP_05381103.1| polyA polymerase [Chlamydia trachomatis 70]
gi|255503633|ref|ZP_05382023.1| polyA polymerase [Chlamydia trachomatis 70s]
gi|255507312|ref|ZP_05382951.1| polyA polymerase [Chlamydia trachomatis D(s)2923]
gi|289525748|emb|CBJ15229.1| polyA polymerase [Chlamydia trachomatis Sweden2]
gi|296435320|gb|ADH17498.1| polyA polymerase [Chlamydia trachomatis E/150]
gi|296439037|gb|ADH21190.1| polyA polymerase [Chlamydia trachomatis E/11023]
Length = 410
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 91/402 (22%), Positives = 155/402 (38%), Gaps = 13/402 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I+ L ++ VGG+VRD L+ ++++DIAT P V IF +
Sbjct: 9 AKKIVRKLRNAGYQAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPD----TLSIG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D
Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFE 124
Query: 134 KV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D V G DL + I+ IG R LED LRILR RF A G +
Sbjct: 125 EKLFDLVEGRADLERKIIRAIGHPKQRFLEDKLRILRAIRFAATLGFALDPQTEQAIIKE 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+S ERIW E+ K+L P ++ + +F +++ S L I
Sbjct: 185 LPSLPNSVSPERIWQELKKMLRTA-PYESLQLLTKLKGLPILFPELKVSSSGFLRSAIAF 243
Query: 253 EQVFEWKIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
Q + ++ DK+ L + + + L ++ +
Sbjct: 244 AQKIHDSQIPEIALLLPLFREVDKEKALEAFSRLRVSNKELKLLEDWYAALPQFLSKQND 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL----QVLSDIIHWKKPLFPLTG 367
+ + + + + I ++ + I + ++
Sbjct: 304 KFFWAHFFASETSSLLLSLFLSMQRSPDEQELFIARIHDLKTRLAAFIERIQSGAPLVSA 363
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D++ GI PG+ +G +L + I +E + LL+
Sbjct: 364 QDLIAKGITPGRLLGELLREAEALSIEHECS-DKEKILSLLK 404
>gi|89052572|ref|YP_508023.1| polynucleotide adenylyltransferase protein [Jannaschia sp. CCS1]
gi|88862121|gb|ABD52998.1| Polynucleotide adenylyltransferase protein [Jannaschia sp. CCS1]
Length = 379
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 123/406 (30%), Positives = 183/406 (45%), Gaps = 32/406 (7%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ W + + L+ VGG VR+ L+ L V DIDI T + P+RVM +
Sbjct: 3 LDADWLRRPETGAVFDALDGHG--VWFVGGCVRNGLLGLDVADIDICTNLRPERVMALAE 60
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
K +PT I +GT+ ++ ++ITTLR D+ TDGR+A V FT D+ RRDFT+
Sbjct: 61 AAGLKAVPTGIDHGTVTVVSGGLPYEITTLRRDVETDGRHASVAFTDVLAEDAARRDFTM 120
Query: 125 NALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-- 181
NALYA + G+V+D GL+DL R ++FIGDA RI EDYLRILRFFRF A Y + +
Sbjct: 121 NALYATRGGEVLDPNGDGLSDLHARRVRFIGDADARIAEDYLRILRFFRFHAWYADPSGG 180
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+D++ L A G+ LS ER+ +EI LL A +P A+ M G+ +
Sbjct: 181 LDAESLAACAAGLDGIAQLSRERVGAEIKTLLRAPDPAPAVAAMDQTGVLAAVLPGASSR 240
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L L+ + D++ R L R S
Sbjct: 241 MLTLLTGLET-----GLTPDAVRRLAALGGDD------------VAERLRLSRSDSKRLT 283
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + ++ L Y +G L + L +T L
Sbjct: 284 LYRTEMGAMTTPGALGYHHGLDAARDILVLRGLLSEQPVTAS-------ALHTAKLGATA 336
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
FP+ D+ GK +G+ L + WI+S+F L++ +L +
Sbjct: 337 TFPIRAADLPDLH---GKPLGDRLKLLEARWIDSTFTLTKSELLNR 379
>gi|15605437|ref|NP_220223.1| polyA polymerase [Chlamydia trachomatis D/UW-3/CX]
gi|166154921|ref|YP_001653176.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|3329159|gb|AAC68299.1| Poly A Polymerase [Chlamydia trachomatis D/UW-3/CX]
gi|165930909|emb|CAP06471.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|297748835|gb|ADI51381.1| Poly(A) polymerase [Chlamydia trachomatis D-EC]
gi|297749715|gb|ADI52393.1| Poly(A) polymerase [Chlamydia trachomatis D-LC]
Length = 410
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 91/402 (22%), Positives = 156/402 (38%), Gaps = 13/402 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I+ L ++ VGG+VRD L+ ++++DIAT P V IF +
Sbjct: 9 AKKIVRKLRNAGYQAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPD----TLSIG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D
Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFE 124
Query: 134 KV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D V G DL + I+ IG R LED LRILR RF A G +
Sbjct: 125 EKLFDLVEGRADLERKIIRAIGHPKQRFLEDKLRILRAIRFAATLGFALDPQTEQAIIKE 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+S ERIW E+ K+L P ++ + + +F +++ S L I
Sbjct: 185 LPSLPNSVSPERIWQELKKMLRTA-PYESLQLLTKLKVLPILFPELKVSSSGFLRSAIAF 243
Query: 253 EQVFEWKIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
Q + ++ DK+ L + + + L ++ +
Sbjct: 244 AQKIHDSQIPEIALLLPLFREVDKEKALEAFSRLRVSNKELKLLEDWYAALPQFLSKQND 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL----QVLSDIIHWKKPLFPLTG 367
+ + + + + I ++ + I + ++
Sbjct: 304 KFFWAHFFASETSSLLLSLFLSMQRSPDEQELFIARIHDLKTRLAAFIERIQSGAPLVSA 363
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D++ GI PG+ +G +L + I +E + LL+
Sbjct: 364 QDLIAKGITPGRLLGELLREAEALSIEHECS-DKEKILSLLK 404
>gi|311742149|ref|ZP_07715959.1| tRNA adenylyltransferase [Aeromicrobium marinum DSM 15272]
gi|311314642|gb|EFQ84549.1| tRNA adenylyltransferase [Aeromicrobium marinum DSM 15272]
Length = 482
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 91/464 (19%), Positives = 166/464 (35%), Gaps = 65/464 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L + L + +VGG VRD+L+ + D D T+ PD+V ++ + +
Sbjct: 22 PVLARVGELFAAAGHEIALVGGPVRDALLGRTGNDWDFTTSATPDQVEQVVAGWADALWD 81
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130
+GTI + +ITT R+D G R V F R D RRDF +NA+
Sbjct: 82 VGREFGTIALRKGDDQLEITTYRTDAYEAGSRKPAVAFGRTLSGDLSRRDFAVNAMAVRL 141
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G+ +D GGL DL +R ++ A +D LR++R RF A G +
Sbjct: 142 PGGEFVDEFGGLADLADRVLRTPVTAQQSFDDDPLRMMRAARFVAQLGFTAAPEVVAAMT 201
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ----- 245
A + I+S+ERI E++KL+ +P+ + + G+ + ++ + L++
Sbjct: 202 AMADRL-AIVSAERIRDELDKLVCGADPVAGLRLLVESGLADRMLPELPALRLERDEHHR 260
Query: 246 -----------LSQVIEAEQVFE-----WKIDSLLRFIVLISWQDKKSILSM-------- 281
L Q I E E + D ++R L+ K
Sbjct: 261 HKDVYEHSLIVLEQAIALEGRLESGDGPPRPDLVIRLAALLHDIGKPRTRRFQPGGTVTF 320
Query: 282 --------------AKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYLYGD 322
K ++ + + + +++ GD
Sbjct: 321 HHHDVVGAKLTRKRMKALRYSNDVTDAVCRLVELHLRFHGYGSGEWTDAAVRRYVRDAGD 380
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK----------PLFPLTGDDVVK 372
+ + +L I + + + ++ L G+ +++
Sbjct: 381 Q--LERLHILTRADCTTRNARKAARLQRTYDELEERIAVLAEAEELGAIRPDLDGNQIME 438
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
G+PPG++VG ++ L +E LR A+
Sbjct: 439 VLGVPPGREVGAAYQFLLDLRMDRG-PLGEEQATEALRAWWAAR 481
>gi|296126066|ref|YP_003633318.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Brachyspira murdochii DSM 12563]
gi|296017882|gb|ADG71119.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Brachyspira murdochii DSM 12563]
Length = 464
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 95/452 (21%), Positives = 177/452 (39%), Gaps = 56/452 (12%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ I +L+ + +VGGAVRD++M ++ + DI T P+ V RIF +PT
Sbjct: 11 PIKEIARILHIEGFQCFLVGGAVRDAVMGITPHEYDITTDAKPEDVQRIFK----YTVPT 66
Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYADQ 131
I +GTI +I + +ITT RSD +DGR+ + + D RRD TINA+ +
Sbjct: 67 GIKHGTILVIIEDMHVEITTFRSDGNYSDGRHPDNVEYASSIEDDLPRRDLTINAMAYNV 126
Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G +ID G+ D++ + +K +GD + R ED LRI+R RF A + +
Sbjct: 127 LDGTLIDMFDGMKDIKRKIVKSVGDPYERFREDGLRIMRAIRFAAKLNFEIEKETFEAIT 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------ 238
I + ERI E N +L + NP + + G+ I ++
Sbjct: 187 HSTGMLASIAA-ERIREEFNGILLSSNPFRGLELLRKTGVLSLILPELMQGYGVAQNKFH 245
Query: 239 -QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI------------------- 278
++ L + E + ++ L+R L K +
Sbjct: 246 KYDVYYHILHTIQSVEPLETEELTLLVRLAALFHDIAKPMVQKKVSKQDDPVYYNHEVVG 305
Query: 279 ----LSMAKKFSLPREIRYFLISFFNCNF--NQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
++ K+ F+ + Q + +++ G + + L++
Sbjct: 306 AKVAKNVMKRLKYSNSEIDFVTLLVRQHMFYYQDEWTDGAVRRFMRAIGVENIKPLLRLR 365
Query: 333 LALHYNNLTHQDTC---------FILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVG 382
A + +D I +++ + + G+D++ ++ + P +G
Sbjct: 366 EADRLGSGHRKDKESKAIPKLLARIDKIIEEENAITVKDLKIDGNDLINEFHLKPSPLIG 425
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
IL + ++ ++E L R + S
Sbjct: 426 KILNYLLDLILDEPELNNREFLLEKTRNFLES 457
>gi|228996750|ref|ZP_04156387.1| CCA-adding enzyme [Bacillus mycoides Rock3-17]
gi|228763069|gb|EEM11979.1| CCA-adding enzyme [Bacillus mycoides Rock3-17]
Length = 384
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 87/392 (22%), Positives = 170/392 (43%), Gaps = 19/392 (4%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82
+ ++ VGG+VRD ++N + DIDIAT+ LP+ VM +F + +P + +GT+ +
Sbjct: 2 KQHGHEAYFVGGSVRDFIINRPIGDIDIATSALPEEVMHLFPRH----VPVGLEHGTVIV 57
Query: 83 ICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140
+ +++TT R+ D R + V F R + D RRDFT+NA+ +++G +ID
Sbjct: 58 VQEGIPYEVTTFRTESDYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMNEEGNIIDLFA 117
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200
G +R + I +G+A R ED LR++R RF + G ++ A + L+ +
Sbjct: 118 GQEAIRKQEIATVGNAADRFQEDALRMMRGIRFVSTLGFF-LEEQTKRAIEEYGHLLEHI 176
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ ERI E KLL K +N + + + L ++S +++ + ++ F
Sbjct: 177 AIERITVEFEKLLTGKYCVNGLQQLVETKL--VTHLPYLQMSEERILKAMQYNWDFFETD 234
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
F + ++ S+ KFS + + + K+ Y
Sbjct: 235 IEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVILAIRSRKTKSWDAV----FLYKT 290
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI---PP 377
G + +++ A+ + + + + ++G+D+ G P
Sbjct: 291 GLHTALMAERVYQAI-IKKYDIFSVNQVQSLFDSLSIHNRQEMKVSGNDL--LGWTEKTP 347
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G V +L ++E + + +E + L+
Sbjct: 348 GPWVAEVLQRIEEEILQERLENEKEKIREWLQ 379
>gi|228990652|ref|ZP_04150617.1| CCA-adding enzyme [Bacillus pseudomycoides DSM 12442]
gi|228769178|gb|EEM17776.1| CCA-adding enzyme [Bacillus pseudomycoides DSM 12442]
Length = 384
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 87/392 (22%), Positives = 170/392 (43%), Gaps = 19/392 (4%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82
+ ++ VGG+VRD ++N + DIDIAT+ LP+ VM +F + +P + +GT+ +
Sbjct: 2 KQHGHEAYFVGGSVRDFIINRPIGDIDIATSALPEEVMHLFPRH----VPVGLEHGTVIV 57
Query: 83 ICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140
+ +++TT R+ D R + V F R + D RRDFT+NA+ +++G +ID
Sbjct: 58 VQEGIPYEVTTFRTESDYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMNEEGNIIDLFA 117
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200
G +R + I +G+A R ED LR++R RF + G ++ A + L+ +
Sbjct: 118 GQEAIRKQEIATVGNAADRFQEDALRMMRGIRFVSTLGFF-LEEQTKRAIEEYGHLLEHI 176
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ ERI E KLL K +N + + + L ++S +++ + ++ F
Sbjct: 177 AIERITVEFEKLLTGKYCVNGLQQLVETKL--VTHLPYLQMSEERILKAMQYNWGFFETD 234
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
F + ++ S+ KFS + + + K+ Y
Sbjct: 235 IEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVILAIRSRKTKSWDAV----FLYKT 290
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI---PP 377
G + +++ A+ + + + + ++G+D+ G P
Sbjct: 291 GLHTALMAERVYQAI-IKKYDIFSVNQVQSLFDSLSIHNRQEMKVSGNDL--LGWTEKTP 347
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G V +L ++E + + +E + L+
Sbjct: 348 GPWVAEVLQRIEEEILQERLENEKEKIREWLQ 379
>gi|297200922|ref|ZP_06918319.1| tRNA adenylyltransferase [Streptomyces sviceus ATCC 29083]
gi|197716906|gb|EDY60940.1| tRNA adenylyltransferase [Streptomyces sviceus ATCC 29083]
Length = 480
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 79/454 (17%), Positives = 161/454 (35%), Gaps = 53/454 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +VGG+VRD+L+ D+D T P V++I V
Sbjct: 27 APVADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPQDVLKIVRPWADAVW 86
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+
Sbjct: 87 EVGIAFGTVGAQKDGYLIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVA 146
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ K ID GGL+DL R ++ G +D LR++R RF A +
Sbjct: 147 LPEKKFIDPHGGLDDLAARVLRTPGTPEASFSDDPLRMMRAARFAAQLDFEVAPEVVTAM 206
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----- 244
+ + + +I+S+ER+ E+NKL+ + +P + + + G+ + + ++ + L+
Sbjct: 207 TEMSGRL-EIVSAERVRDELNKLILSAHPRKGLTLLVDTGLAEHVLPELPALRLESDEHH 265
Query: 245 --------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-------------------- 276
L + +A + + D LR L+ K
Sbjct: 266 RHKDVYEHTLIVLEQAIALEKEGPDLTLRLSALLHDIGKPRTRRFEKDGRVSFHHHEVVG 325
Query: 277 --SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
++ + + E Y+ ++ +L
Sbjct: 326 AKMTKKRMTALKYSNDLVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPLLDRLHK 385
Query: 332 FLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + + L G+ +++ G+ PG
Sbjct: 386 LTRSDCTTRNKRKAAALSRAYDGLEERISQLQEQEELDSIRPDLDGNQIMEILGVGPGPA 445
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
VG H + + + + ++ L++ A+
Sbjct: 446 VGRAYKHMLELRLENG-PMGYDEAVAALKEWWAA 478
>gi|88854483|ref|ZP_01129150.1| poly(A) polymerase [marine actinobacterium PHSC20C1]
gi|88816291|gb|EAR26146.1| poly(A) polymerase [marine actinobacterium PHSC20C1]
Length = 474
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 83/477 (17%), Positives = 165/477 (34%), Gaps = 65/477 (13%)
Query: 1 MVSIVQH-----KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTIL 55
M S+ K + + + N + +VGG VRD+ + +V D+D AT
Sbjct: 1 MESVADAIESLGKLADSKPVATLAARFNAEGFELALVGGPVRDAFLGRAVTDLDFATNAN 60
Query: 56 PDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWK 114
PD +MR+ +GTI + +ITT R+D R V F +
Sbjct: 61 PDEIMRLVKPISEAQWDIGRDFGTIAARIDGESVEITTYRADSYNGASRKPVVAFGDSLE 120
Query: 115 ADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
D RRDF++NA+ + ++D GGL L +T+ G +D LR++R RF
Sbjct: 121 KDLERRDFSVNAMALRLPERVLVDPWGGLEHLMTKTLTTPGSPEVSFGDDPLRMMRAARF 180
Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
+ G + + + A + + I+S ER+ E+ KLL+ +P+ I + G+ +
Sbjct: 181 TSQLGF-TVSPETVRAMTELSARIDIVSVERVSDELTKLLKTDDPVPGIRLLVESGLAEH 239
Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWK-------------------IDSLLRFIVLISWQD 274
+ ++ + L+ + V+E D +LR L+
Sbjct: 240 VLPEIPALKLEVDEHAHH-KDVYEHSLTVLRQAIGLEKSRAGIEGPDLILRLAALLHDIG 298
Query: 275 KKSILS----------------------MAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
K S + +E + + +
Sbjct: 299 KPSTRKIERGGVVTFHHHDVVGAKLVTKRLRALRFDKETITSVARLVELHLRFFGYTEGA 358
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV-------------LSDIIHWK 359
+ +L+ + ++T ++ ++ +++
Sbjct: 359 WTDSAVRRYVRDAGDQLERLHIITRADVTTRNVRKADRLSFAYDDLEDRIAAIAEAEGLA 418
Query: 360 KPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
L G++++ + P ++VG + ++ L + LR +
Sbjct: 419 AVRPDLDGEEIMAILDLKPSREVGEAYTFLLELRLDEG-PLGAAEAEERLRTWWSER 474
>gi|330836490|ref|YP_004411131.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Spirochaeta coccoides DSM 17374]
gi|329748393|gb|AEC01749.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Spirochaeta coccoides DSM 17374]
Length = 475
Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats.
Identities = 101/450 (22%), Positives = 171/450 (38%), Gaps = 53/450 (11%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ S + IVGGAVRD L+ + +D D AT +P+ VM F KVIPT
Sbjct: 25 HIQEFSSFFARKGLSLYIVGGAVRDWLLGIRNEDFDFATDAMPEEVMDTFH----KVIPT 80
Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ RK+ +++TT R D +DGR+ V F R+ + D RRDFTINAL +
Sbjct: 81 GIKHGTVTVLFRKQQYEVTTFRVDGDYSDGRHPDSVAFVRNLEQDLARRDFTINALAVNA 140
Query: 132 QGKVIDY-VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
V+ G+ DL+ + I+ IGD R+ ED LRI+R RF G I+ A
Sbjct: 141 YTGVLTDLHDGIGDLKRKVIRAIGDPEARLSEDALRIVRACRFAGKLGF-AIEDKTFTAM 199
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---------- 240
K GL+ +S ERI E++++L P + + K ++
Sbjct: 200 KKLSPGLEAVSGERIHEELSRMLLGARPSACLRLLQECDALKIFMPELDACVGIEQGGYH 259
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL--------------------- 279
I ++ + + +R+ L K
Sbjct: 260 IHDVFTHSLLACDAAAKNGASLNVRYAALFHDIGKPETRGGTIAGGHTFYKHEFVSERLT 319
Query: 280 -SMAKKFSLPREIRYFLISFFNCNFNQ--KTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
+ ++ R ++ + + + +++ G + + +A
Sbjct: 320 AMVCERLKFSRADTERILLLVRSHMLHYTEDWTDAAVRRFIRRIGVDALDELFALHMADQ 379
Query: 337 YNNLTH-------QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
+ I + L + G ++ GIP G+ +G I
Sbjct: 380 EAIAGKSSMLTLGRLPDRIREQLHAGTALSVKDLTVDGKVLMAAGIPAGRHMGTIFQDLL 439
Query: 390 QEWINSSFQLSQEDLHHLL----RKLIASS 415
+ +S + + E L RK+ S
Sbjct: 440 ELVTDSPEKNTPEILIAEAQMRYRKIKEQS 469
>gi|166154046|ref|YP_001654164.1| polyA polymerase [Chlamydia trachomatis 434/Bu]
gi|301335247|ref|ZP_07223491.1| polyA polymerase [Chlamydia trachomatis L2tet1]
gi|165930034|emb|CAP03517.1| polyA polymerase [Chlamydia trachomatis 434/Bu]
Length = 410
Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats.
Identities = 90/402 (22%), Positives = 156/402 (38%), Gaps = 13/402 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I+ L ++ VGG+VRD L+ ++++DIAT P V IF +
Sbjct: 9 AKKIVRKLRNAGYQAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPD----TLSIG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D
Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFE 124
Query: 134 KV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D V G DL + I+ IG R LED LRILR RF A G +
Sbjct: 125 EKLFDLVEGRADLERKIIRAIGHPKQRFLEDKLRILRAIRFAATLGFALDPQTEQAIIKE 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
++ ERIW E+ K+L P ++ + + +F +++ S L I
Sbjct: 185 LPSLPNSVAPERIWQELKKMLRTA-PYESLQLLTKLKVLPILFPELKVSSSGFLRSAIAF 243
Query: 253 EQVFEWKIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
Q + ++ DK+ L + + + L ++ +
Sbjct: 244 AQKIHDSQIPEIALLLPLFREVDKEKALEAFSRLRVSNKELKLLEDWYAALPQFLSKQND 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL----QVLSDIIHWKKPLFPLTG 367
+ + + + + I ++ + I + ++
Sbjct: 304 KFFWAHFFASETSSLLLSLFLSMQRSPDEQELFIARIHDLKTRLAAFIERIQSGAPLVSA 363
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D++ GI PG+ +G +L + I +E + LL+
Sbjct: 364 QDLIAKGITPGRLLGELLREAEALSIEHECS-DKEKILSLLK 404
>gi|220917575|ref|YP_002492879.1| tRNA cytidylyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955429|gb|ACL65813.1| tRNA cytidylyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 436
Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats.
Identities = 93/424 (21%), Positives = 163/424 (38%), Gaps = 30/424 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKV 70
++++L L+ +S +VGGAVRD L++ D D+AT P +VM +F +V
Sbjct: 14 EAILDVLRRLSAAGHRSWLVGGAVRDLLLHRPRAATDFDVATPATPRQVMALFR----RV 69
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALY 128
IPT I +GT+ ++ + ++TT R + T + +AD RRDFT+NA+
Sbjct: 70 IPTGIDHGTVTVLVGDEKVEVTTFRGEGDYVDGRRPASVTFLAELEADLARRDFTMNAMA 129
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D Q D G D+ R I+ +G+ R ED LR +R RF A G + +
Sbjct: 130 YDPLQADFRDPFDGRVDMSRRRIRAVGEPAARFGEDGLRAMRAVRFAAQLGYRLDPATRA 189
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ +S ER+ E+++L+ A + A++ + G+ + + + L
Sbjct: 190 AIPGALEVVR-KVSVERVAEELSRLVLAAHAGPALLLLRRTGLLGVVLPAIAALPLSAYR 248
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN------- 300
+ + LR L+ + + LPR + + +
Sbjct: 249 HAASVVR--HAPAEPALRLAALLHGVGPEEASKIVFGLRLPRRLSDEVGTLLRAYACPAA 306
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ + +I++ G + + A ++ A +V
Sbjct: 307 RHPAALPDAPADIRRWLARTGPQRVPAVFELVSAELRTLSPAHRAAVAPEVSRARAAIDA 366
Query: 361 P----------LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
L G V+ G PG VG L H + Q ++E L LR
Sbjct: 367 ELAAAPPLATGDLALDGRAVMSLLGEGPGPHVGEALHHLLDRVLEDPAQNTREALAAELR 426
Query: 410 KLIA 413
+ A
Sbjct: 427 RWWA 430
>gi|226362873|ref|YP_002780653.1| tRNA nucleotidyltransferase [Rhodococcus opacus B4]
gi|226241360|dbj|BAH51708.1| tRNA nucleotidyltransferase [Rhodococcus opacus B4]
Length = 483
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 81/459 (17%), Positives = 167/459 (36%), Gaps = 56/459 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
L + + +VGG+VRD+++ D+D T P++V ++ S
Sbjct: 26 SEVLTPLGEKFASAGHELYLVGGSVRDAILGRLGTDLDFTTDARPEQVQKLLSGWVDNQW 85
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GTI + +ITT R+D R V F + D +RRDFT+NA+
Sbjct: 86 DTGIEFGTISAAKAGQQIEITTYRADAYDRVSRNPVVQFGTKLEDDLVRRDFTVNAMAVR 145
Query: 131 Q----QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+D + G++ L + + +D LR+LR RF + G +
Sbjct: 146 IGADGSQDFVDPLNGMDALLAGMLDTPSAPENSFNDDPLRMLRAARFVSQLGFTLHER-V 204
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-- 244
A ++ +++ER+ +E++KL+ + P++ + M G+ + +V ++ L+
Sbjct: 205 HAAIADMAPQIERITAERVRAELDKLILGEFPIDGMNVMCETGLADFVLPEVPQMKLEID 264
Query: 245 -----------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK----------------- 276
L+ + +A + + D +LR+ L+ K
Sbjct: 265 EHHQHKDVYWHSLTVLKQAVDLEDGDPDLVLRWAALLHDIGKPDTKRNEPGGGVSFHHHE 324
Query: 277 -----SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAK 328
+ + +++ + + + Y+ ++ +
Sbjct: 325 VVGAKMVRKRMRALKYSKQMVDDVSQLVFLHLRFHGYGKGQWTDSAVRRYVTDAGPLLPR 384
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + + DI + L G+ +++ GIP
Sbjct: 385 LHKLVRADCTTRNKRRAAALQATYDDIEERIARIAEQEDLARVRPDLDGNAIMELLGIPA 444
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G VG + K+ ++ LS+++ L A+ Q
Sbjct: 445 GPDVGKAWKYLKELRLDRG-PLSRDEAEAELLSWWAAQQ 482
>gi|326329108|ref|ZP_08195437.1| tRNA adenylyltransferase [Nocardioidaceae bacterium Broad-1]
gi|325953190|gb|EGD45201.1| tRNA adenylyltransferase [Nocardioidaceae bacterium Broad-1]
Length = 483
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 82/459 (17%), Positives = 154/459 (33%), Gaps = 63/459 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ ++ G + +VGG VRD+++ D+D T+ P+ +I +
Sbjct: 26 APVIDSLGEAFAAGGHELALVGGPVRDAMLGRPHNDLDFTTSARPEETEKILRTWGEALW 85
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++TT RS+ D R V + D +RRDFT+NA+
Sbjct: 86 DMGRDFGTIGTRKGPWQVEVTTYRSEAYSADSRKPAVAYGTSLADDLVRRDFTVNAMAVR 145
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+V+D GG+ DL R ++ G +D LR++R RF A G + + + A
Sbjct: 146 LPGREVVDLYGGVVDLATRMLRTPGTPEDSFSDDPLRMMRAARFAAQLGF-TVAPEVVAA 204
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------- 238
+ I+S+ER+ E+ KL+ A P + + G+ + + ++
Sbjct: 205 MTDMASRISIISAERVRDELVKLICAPFPRLGLTLLVETGLAELVLPELTALRMERDEHN 264
Query: 239 -----QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK----------------- 276
E +L L Q I+ E D + RF L+ K
Sbjct: 265 RHKDVYEHTLTVLEQSIDQEARLGGGPDFVSRFAALMHDVGKPRTRKFHDDGTVSFHHHD 324
Query: 277 -----SILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYLYGDKVMI 326
K + + + + +++ GD+ +
Sbjct: 325 VVGAKMTRKRMKALRFSNDEIEAVSKLVELHLRFHGYGDGDWTDSAVRRYVRDAGDQ--L 382
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGI 375
+L + + + + + L G+ ++ GI
Sbjct: 383 DRLHVLTRADCTTRNRRKADRLARTYDALEARIERISEEEELAALRPALDGNQIMSLLGI 442
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQED----LHHLLRK 410
PG++VG ++ E L +
Sbjct: 443 SPGREVGAAYKFLMDLRLDEGILSEDEAAKRLLDWWAER 481
>gi|319789869|ref|YP_004151502.1| Polynucleotide adenylyltransferase region protein [Thermovibrio
ammonificans HB-1]
gi|317114371|gb|ADU96861.1| Polynucleotide adenylyltransferase region protein [Thermovibrio
ammonificans HB-1]
Length = 881
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 87/419 (20%), Positives = 162/419 (38%), Gaps = 25/419 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I + + + +VGG VRD ++ DIDI + +K + T
Sbjct: 466 IERIGEVAQELGLNAYLVGGFVRDLVIGRKNFDIDIVVEGDAVTFSKEVAKRLGAKVHTF 525
Query: 75 ISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ T +I D+ + R++L V T K D +RRDFTIN L
Sbjct: 526 ERFKTATLIFPEGLRIDLASARTELYRSPGALPEVDTAPLKKDLMRRDFTINTLAVKINP 585
Query: 134 ----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-GEKNIDSDGLV 188
++ID+ GGL D++ R I+ + +ED RILR RF Y E ++ L+
Sbjct: 586 SEFGRLIDFFGGLRDIKERKIRVLH--SLSFVEDPTRILRALRFATRYRFELGRHTERLL 643
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD---- 244
+K K + +RI+ E+ ++L +NPL + + G+ E+F ++
Sbjct: 644 KMAVERKLFKTVEGQRIYHELKQILLEENPLRVFLKLDRYGVLAELFPGLRWDREKKDLF 703
Query: 245 ---QLSQVIEAEQVFEWKIDS---LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ S + + D+ L+ + L + + + +LP + L++
Sbjct: 704 EKVRKSVIWHKLNFPKLSPDTDYHLVYLLALFWGEPENRVKEYLAALTLPGKEERELLNL 763
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ YL + +L IFL+ + + L I
Sbjct: 764 LKRARELLPRLESADRNSTYLSLLESAPEELLIFLSAVSPPEVSEKVREVATRLRYI--- 820
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF-QLSQEDLHHLLRKLIASSQ 416
++G+D+ G+ PG +L K + S+E+ L++L+ + +
Sbjct: 821 ---KPLVSGNDIKALGLKPGPVFSELLRRVKYAVADGELPPDSREEQLAYLKELVDAVK 876
>gi|221194633|ref|ZP_03567690.1| cca-adding enzyme [Atopobium rimae ATCC 49626]
gi|221185537|gb|EEE17927.1| cca-adding enzyme [Atopobium rimae ATCC 49626]
Length = 473
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 93/445 (20%), Positives = 168/445 (37%), Gaps = 58/445 (13%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
L +L ++ IVGG VRD+L+ + DIDI T+ ++ + Y V T I +G
Sbjct: 31 LEILESAGFEAWIVGGWVRDALLGSATHDIDITTSAHWEQTAETYRAAGYVVHETGIKHG 90
Query: 79 TIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYADQQGKVI 136
T+ ++ +ITT R++ +D R+ F D RRDFT+NA+ + ++
Sbjct: 91 TVTVVVNGHPLEITTYRTEGTYSDHRHPDEVCFVDSIDKDLARRDFTVNAMAFHPRRGLL 150
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
D G DL+ R I+ +GDA R ED LR+LR RF G +I+ A +
Sbjct: 151 DPYHGQYDLQQRCIRAVGDAQSRFEEDALRVLRAIRFACKLGF-SIEKKTADALSASASR 209
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
L ++ ERI +E+ +++A A+ ++ + A V
Sbjct: 210 LAFVAQERIGNEMCAIMDAGVMARALRI--GFAGVAAAVPELAAMEGFDQQSQYHAYDVC 267
Query: 257 EWK--------------IDSLLRFIVLISW----------------------QDKKSILS 280
E LR+ L+ + +
Sbjct: 268 EHTARVCAGVEAFSAGRASCALRWAALLHDVAKPKTFSEDVSHRGHFFGHPEVSAQMAQT 327
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM---------IAKLKI 331
+ + ++P+ + I + + +IP I++ + + I +LK
Sbjct: 328 ILESMAIPQSVVRQAIQLIRWHDLEIDKNIPSIRRFIATLDEGWIGGGALLATQIIELKQ 387
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKP-------LFPLTGDDVVK-YGIPPGKKVGN 383
AL + + + + + ++G D+++ I PG VG
Sbjct: 388 ADALAKAPACREYALELDDISRMVRQEIQKGVAQNPQDLAVSGTDIMQLLHIGPGPSVGM 447
Query: 384 ILVHCKQEWINSSFQLSQEDLHHLL 408
L + ++ ++EDL LL
Sbjct: 448 YLRQLFEAYLAGEVDNTREDLLALL 472
>gi|76789444|ref|YP_328530.1| polyA polymerase [Chlamydia trachomatis A/HAR-13]
gi|237803134|ref|YP_002888328.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT]
gi|237805055|ref|YP_002889209.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT]
gi|76167974|gb|AAX50982.1| polyA polymerase [Chlamydia trachomatis A/HAR-13]
gi|231273355|emb|CAX10270.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT]
gi|231274368|emb|CAX11163.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT]
Length = 410
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 90/402 (22%), Positives = 156/402 (38%), Gaps = 13/402 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I+ L ++ VGG+VRD L+ ++++DIAT P + IF +
Sbjct: 9 AKKIVRKLRNAGYQAYFVGGSVRDMLLGRPIEEVDIATNASPTIITTIFPD----TLSIG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D
Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFE 124
Query: 134 KV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D V G DL + I+ IG R LED LRILR RF A G +
Sbjct: 125 EKLFDLVEGRADLERKIIRAIGHPKQRFLEDKLRILRAIRFAATLGFALDPQTEQAIIKE 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+S ERIW E+ K+L P ++ + + +F +++ S L I
Sbjct: 185 LPSLPNSVSPERIWQELKKMLRTA-PYESLQLLTKLKVLPILFPELKVSSSGFLRSAIAF 243
Query: 253 EQVFEWKIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
Q + ++ DK+ L + + + L ++ +
Sbjct: 244 AQKIHDSQIPEIALLLPLFREVDKEKALEAFSRLRVSNKELKLLEDWYAALPQFLSKQND 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL----QVLSDIIHWKKPLFPLTG 367
+ + + + + I ++ + I + ++
Sbjct: 304 KFFWAHFFASETSSLLLSLFLSMQRSPDEQELFIARIHDLKTRLAAFIERIQSGAPLVSA 363
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D++ GI PG+ +G +L + I +E + LL+
Sbjct: 364 QDLIAKGITPGRLLGELLREAEALSIEHECS-DKEKILSLLK 404
>gi|213966257|ref|ZP_03394441.1| tRNA adenylyltransferase [Corynebacterium amycolatum SK46]
gi|213951109|gb|EEB62507.1| tRNA adenylyltransferase [Corynebacterium amycolatum SK46]
Length = 480
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 82/465 (17%), Positives = 171/465 (36%), Gaps = 57/465 (12%)
Query: 1 MVSIVQHKWFHDSDLI-NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59
M+++ +S+++ ++ + + + +VGG+VRD+L+ D+D T P+
Sbjct: 1 MLAVADQAIAKESEILDSLAAAFSAAGHRLYLVGGSVRDALLGRLGVDLDFTTDARPEVT 60
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSL 118
I V T I +GT+ + +ITT R+D R +V F + D +
Sbjct: 61 RAILDDWADIVWDTGIEFGTLSAERHGRQMEITTFRADTYDQVSRNPEVTFGDTLEGDLI 120
Query: 119 RRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
RRDF N++ + +D +GG DL + G +D LR+LR RF
Sbjct: 121 RRDFRCNSIAVELHGDGTRTFLDPLGGFEDLVAGVLDTPGAPEISFGDDPLRMLRACRFA 180
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
+ G ++ L A + + ++ ERI +E+NKL+ +P I M G+ +
Sbjct: 181 SQLGF-DVAPRVLKALKEMSSEIDRITVERISTELNKLILGADPSRGIDLMVESGLADRV 239
Query: 235 FLDVQEISLDQLSQVIE--------------AEQVFEWKIDSLLRFIVLISWQDKKS--- 277
++ ++ + Q +Q + D +LR+ L+ K +
Sbjct: 240 LPEISDMRMTQDEHRQHKDVYQHSLQVMRQAIDQEEPGEPDLVLRWAALLHDCGKPATRA 299
Query: 278 -------------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ +K P++ + + + +
Sbjct: 300 YNEQGNVTFYQHEVVGAKLVRRRLRKLKFPKKTNHEISQLVYLHMRFHGYGEGKWTDSAV 359
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQ-------------DTCFILQVLSDIIHWKKPLFPL 365
L+ + + T + ++ L++ + L
Sbjct: 360 RRYVNDAGDLLERLNKIVRADCTTRNRRKAARLARACDSLEARIKELAEQEDLARVRPDL 419
Query: 366 TGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G+++++ + PGK+VG + K+ + S ++ + L +
Sbjct: 420 DGNEIMEILDLKPGKEVGQAWNYLKELRLESGPLEREDAILALKK 464
>gi|296122115|ref|YP_003629893.1| tRNA adenylyltransferase [Planctomyces limnophilus DSM 3776]
gi|296014455|gb|ADG67694.1| tRNA adenylyltransferase [Planctomyces limnophilus DSM 3776]
Length = 420
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 94/414 (22%), Positives = 178/414 (42%), Gaps = 30/414 (7%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I I++ L + + GG VRD L+ + +D D+AT+ P+ V ++F R K
Sbjct: 8 AIEIVTTLRQAGHIALFAGGCVRDLLLGKTPKDYDVATSANPEEVQQLFGYRRTKA--VG 65
Query: 75 ISYGTIKIICRKKY--------------FDITTLRSDL-ITDGRYAKVVFTRDWKADSLR 119
S+G I ++ +K ++ T R D DGR + V + D+ R
Sbjct: 66 ASFGVIMVLPARKKGEPHHKSDQPAIPPVEVATFRKDGLYVDGRRPETVTFSSPEEDAQR 125
Query: 120 RDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN ++ D + D+VGG DL++R ++ IG A R ED LR+LR RF +
Sbjct: 126 RDFTINGMFFDPLTETVHDFVGGQIDLQSRQLRAIGIAADRFKEDKLRLLRAVRFNSILD 185
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I+ + A + ++S ERI +E+ ++L + ++I + + G+ IF +
Sbjct: 186 F-SIEFETWRAIQDLAPEICVVSHERIAAELRRMLAHPSRHSSIQTLDHAGLTGAIFGKI 244
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ L +++ + ++ + + +++ S+ + L + R ++
Sbjct: 245 LSATSPDLLLALQSLKTDHFE----TAMALWLRELPVETLRSICSQLRLSNQERDAIVWL 300
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S + + L ++ + AL L ++ + + + W
Sbjct: 301 HTMQSAWLEFSDWPVCRQKRLLAYPLVNELIASGQALASAQLL--ESRHVDAAIERLQSW 358
Query: 359 KK----PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K P +TG+D++ +GI PG + IL + + S+E H L
Sbjct: 359 SKEEIDPPLQVTGEDLIHWGISPGPQFKQILEQLRDGQLEGRL-TSREAAHQWL 411
>gi|239942688|ref|ZP_04694625.1| putative RNA nucleotidyltransferase [Streptomyces roseosporus NRRL
15998]
gi|239989147|ref|ZP_04709811.1| putative RNA nucleotidyltransferase [Streptomyces roseosporus NRRL
11379]
gi|291446152|ref|ZP_06585542.1| RNA nucleotidyltransferase [Streptomyces roseosporus NRRL 15998]
gi|291349099|gb|EFE76003.1| RNA nucleotidyltransferase [Streptomyces roseosporus NRRL 15998]
Length = 480
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 81/453 (17%), Positives = 166/453 (36%), Gaps = 53/453 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +VGG+VRD+L+ D+D T P+ V++I V
Sbjct: 27 SPVADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVW 86
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+
Sbjct: 87 EVGIAFGTVGSQKDGYQIEVTTYRSEAYDRTSRKPEVSYGDSIEDDLVRRDFTVNAMAVA 146
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + +D GGL DL +R ++ G +D LR+LR RF A + + + A
Sbjct: 147 LPEKEFVDPYGGLKDLADRVLRTPGTPEASFSDDPLRMLRAARFAAQLDF-EVAPEVITA 205
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----- 244
+ + I+S+ER+ E+NKLL +++P + + + G+ + ++ + L+
Sbjct: 206 MTEMAARIDIVSAERVRDELNKLLLSQHPRKGLGLLVDTGLAAHVLPELPALRLESDEHH 265
Query: 245 --------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-------------------- 276
L+ + +A + E D +LR L+ K
Sbjct: 266 RHKDVYEHSLTVLEQAIDLEEGGPDLVLRLAALLHDIGKPRTRRFEKDGRVSFHHHEVVG 325
Query: 277 --SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
E+ + + E Y+ ++ +L
Sbjct: 326 AKMTKKRMTALKYSNELVKDVSRLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLERLHK 385
Query: 332 FLALHYNNLTHQDTCFILQ----------VLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + +L + L G+++++ G+ PG
Sbjct: 386 LTRSDCTTRNKRKANALSRTYDALEERIALLQEQEELDSIRPDLDGNEIMQILGVGPGPV 445
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+G ++ + + ++ L++ A
Sbjct: 446 IGKAYGFLLEQRLEHG-PMERDAAVAALKEWWA 477
>gi|327328873|gb|EGE70633.1| tRNA adenylyltransferase [Propionibacterium acnes HL103PA1]
Length = 507
Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats.
Identities = 81/460 (17%), Positives = 152/460 (33%), Gaps = 59/460 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + + + + +VGG+VRD+LM D+D T PD I
Sbjct: 43 INTLFEQIPLVAELGEAFARAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDGTEAILR 102
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+ + ++GTI ++TT R+D D R ++V+ + D +RRDFT
Sbjct: 103 QHTHATWDIGRAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLEDDLIRRDFT 162
Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + D GL D+ + ++ +D LR++R RF + G +
Sbjct: 163 VNAMALHAATRTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLGF-TV 221
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
++ A ++I+S+ER+ E++K L +P + + I + ++
Sbjct: 222 TNEVRAAMTDMASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALR 281
Query: 239 ------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK---------- 276
E SL L Q I+ E+ D R L+ K
Sbjct: 282 LERDEHHRHKDVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGDK 341
Query: 277 ------------SILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYL 319
K P ++ + + + +++
Sbjct: 342 VSFHHHDIVGAKMARKRLKALIYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRD 401
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDD 369
GD+ + +L I + + D+ L G
Sbjct: 402 AGDQ--LERLHILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQ 459
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ I PG +VG ++ E + LL
Sbjct: 460 IMATLDIKPGPEVGKAYKFLLNLRLDEGPHTLDEAKNALL 499
>gi|240168387|ref|ZP_04747046.1| poly(a) polymerase PcnA [Mycobacterium kansasii ATCC 12478]
Length = 480
Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats.
Identities = 85/452 (18%), Positives = 170/452 (37%), Gaps = 55/452 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
H + L + S + + +VGG+VRD+L+ D+D T P++V ++ V
Sbjct: 21 HTAVLRELGSAFAEAGHELYLVGGSVRDALLGRLSPDLDFTTDARPEQVQKLVRSWADAV 80
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
T I +GTI + +ITT R+D R+ +V F D +RRDFT+NA+
Sbjct: 81 WDTGIDFGTIGVGKDAYRLEITTFRADSYDQVSRHPEVSFGDRLHDDLVRRDFTVNAMAV 140
Query: 130 DQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ +D +GGL LR++ + +D LR+LR RF + G +
Sbjct: 141 RVTPNGPGEFLDPLGGLASLRDKVLDTPAPPSESFGDDPLRMLRAARFVSQLGF-TVAPR 199
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
A + L +S+ER+ +E++KLL +P+ I M G+ + + +V
Sbjct: 200 VRTAIEEMAPQLGRISAERVGAELDKLLLGDDPVAGIDLMVQSGMGEVVLPEVGGMRMAI 259
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------- 281
+++ L+ + +A + + + D +LR+ L+ K +
Sbjct: 260 DEHHQHKDVYQHSLTVLRQAMALEDEEPDLVLRWAALLHDIGKPATRRHEANGGVSFHHH 319
Query: 282 -----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIA 327
+ +++ + + + Y+ +++
Sbjct: 320 EVVGAKMVRKRMRALKYSKQMIDDVSQLVYLHLRFHGYGDAKWTDSAVRRYVTDAGPLLS 379
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIP 376
+L + + + + + L G+ +++ IP
Sbjct: 380 RLHKLVRADCTTRNQRRAARLQVSYDRLEQRIAELAAQEDLARVRPDLDGNQIMRLLDIP 439
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G VG + K+ ++ ++E LL
Sbjct: 440 AGPLVGEAWRYLKELRLDRGPLSTEEATAELL 471
>gi|170742595|ref|YP_001771250.1| polynucleotide adenylyltransferase region [Methylobacterium sp.
4-46]
gi|168196869|gb|ACA18816.1| Polynucleotide adenylyltransferase region [Methylobacterium sp.
4-46]
Length = 418
Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats.
Identities = 117/365 (32%), Positives = 186/365 (50%), Gaps = 9/365 (2%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76
+L L +++ +VGGAVRD+L+ +V D+D+ATT+LP+ VMR + + K +PT IS
Sbjct: 20 KVLDALALPGEETRLVGGAVRDALLGRAVADVDLATTLLPETVMRRAAASGLKPVPTGIS 79
Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136
+GT+ ++ + F++TTLR D+ TDGR+A V + RD+ D+ RRDFTINAL+AD G +
Sbjct: 80 HGTVTVVAHGEPFEVTTLREDVETDGRHAVVRYGRDFGRDAARRDFTINALFADAGGHLH 139
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
D VGGL DL ++FIGD RI EDYLRILRFFRF A YG +D GL A+I A+ G
Sbjct: 140 DPVGGLPDLAAGRVRFIGDPAQRIREDYLRILRFFRFHARYGRGPLDPAGLAAAIAARDG 199
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
L LS ER+ E+ KL+ A + M G+ + + + ++ +L+++ +
Sbjct: 200 LATLSRERVRVEMLKLVAAPGAPEVVAVMSATGLLQRLLGGIGDLG--RLARLRSRDD-- 255
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+R + ++ Q + + + L + L +
Sbjct: 256 ---PPDPVRRLAALAVQSEADADRLREGLRLSKAEHARLAGAAAALAALHGATEAIDAAA 312
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK--PLFPLTGDDVVKYG 374
+ + + + ++L+ + + PLFP+TG +V G
Sbjct: 313 LRRQVARHGLPAIIDATMILAGEPRPILDEEARELLASLAAGRIAVPLFPVTGAQLVAGG 372
Query: 375 IPPGK 379
PG
Sbjct: 373 ATPGP 377
>gi|302559683|ref|ZP_07312025.1| tRNA adenylyltransferase [Streptomyces griseoflavus Tu4000]
gi|302477301|gb|EFL40394.1| tRNA adenylyltransferase [Streptomyces griseoflavus Tu4000]
Length = 488
Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats.
Identities = 84/464 (18%), Positives = 163/464 (35%), Gaps = 61/464 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +VGG+VRD+L+ D+D T P V+RI V
Sbjct: 26 APVADELARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPQDVLRIVRPWADAVW 85
Query: 72 PTSISYGTIKIICR--------KKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDF 122
I++GT+ ++TT RS+ R +V + + D +RRDF
Sbjct: 86 DVGIAFGTVGAQKDARVGDADRSFQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDF 145
Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T+NA+ + + ID GGL DL R ++ G +D LR++R RF A
Sbjct: 146 TVNAMAVALPEKRFIDPHGGLGDLAARALRTPGTPEASFSDDPLRMMRAARFAAQLDF-E 204
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ + + A + ++I+S+ER+ E+NKL+ + +P + + + GI + + ++ +
Sbjct: 205 VAPEVVAAMKEMAGRIEIVSAERVRDELNKLILSAHPRKGLSLLVDTGIAEYVLPELPAL 264
Query: 242 SLDQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKK------------ 276
L++ L + +A + E D LR L+ K
Sbjct: 265 HLERDEHHRHKDVYDHTLIVLEQAMALEEGGPDLTLRLAALLHDIGKPRTRRFEKDGRVS 324
Query: 277 ----------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDK 323
E+ + + E Y+
Sbjct: 325 FHHHEMVGAKMTKKRMTALKYSNELVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAG 384
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVVK- 372
++ +L + + + + L G+ +++
Sbjct: 385 PLLGRLHKLTRSDCTTRNRRKAAALSRAYDGLEERIAQLQEQEELDAIRPDLDGNQIMEI 444
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G+ PG VG H + + + ++ + L++ A+ Q
Sbjct: 445 LGVKPGPAVGQAYKHLLELRLENG-PMAHDAAVAALKEWWAAQQ 487
>gi|296436248|gb|ADH18422.1| polyA polymerase [Chlamydia trachomatis G/9768]
gi|296437177|gb|ADH19347.1| polyA polymerase [Chlamydia trachomatis G/11222]
gi|296438108|gb|ADH20269.1| polyA polymerase [Chlamydia trachomatis G/11074]
gi|297140609|gb|ADH97367.1| polyA polymerase [Chlamydia trachomatis G/9301]
Length = 410
Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats.
Identities = 91/402 (22%), Positives = 155/402 (38%), Gaps = 13/402 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I+ L ++ VGG+VRD L+ ++++DIAT P V IF +
Sbjct: 9 AKKIVRKLRNAGYQAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPD----TLSIG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D
Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFE 124
Query: 134 KV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D V G DL + I+ IG R LED LRILR RF A G +
Sbjct: 125 EKLFDLVEGRADLERKIIRAIGHPRQRFLEDKLRILRAIRFAATLGFALDPQTEQAIIKE 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+S ERIW E+ K+L P ++ + +F +++ S L I
Sbjct: 185 LPSLPNSVSPERIWQELKKMLRTA-PYESLQLLTKLKGLPILFPELKVSSSGFLRSAIAF 243
Query: 253 EQVFEWKIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
Q + ++ DK+ L + + + L ++ +
Sbjct: 244 AQKIHDSQIPEIALLLPLFREVDKEKALEAFSRLRVSNKELKLLEDWYAALPQFLSKQND 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL----QVLSDIIHWKKPLFPLTG 367
+ + + + + I ++ + I + ++
Sbjct: 304 KFFWAHFFASETSSLLLSLFLSMQRSPDEQELFIARIHDLKTRLAAFIERIQSGAPLVSA 363
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D++ GI PG+ +G +L + I +E + LL+
Sbjct: 364 QDLIAKGITPGRLLGELLREAEALSIEHECS-DKEKILSLLK 404
>gi|255311533|ref|ZP_05354103.1| polyA polymerase [Chlamydia trachomatis 6276]
gi|255317834|ref|ZP_05359080.1| polyA polymerase [Chlamydia trachomatis 6276s]
Length = 410
Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats.
Identities = 91/402 (22%), Positives = 156/402 (38%), Gaps = 13/402 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I+ L ++ VGG+VRD L+ ++++DIAT P V IF +
Sbjct: 9 AKKIVRKLRNAGYQAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPD----TLSIG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D
Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFE 124
Query: 134 KV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D V G DL + I+ IG R LED LRILR RF A G +
Sbjct: 125 EKLFDLVEGRADLERKIIRAIGHPRQRFLEDKLRILRAIRFAATLGFALDPQTEQAIIKE 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+S ERIW E+ K+L P ++ + + +F +++ S L I
Sbjct: 185 LPSLPNSVSPERIWQELKKMLRTA-PYESLQLLTKLKVLPILFPELKVSSSGFLRSAIAF 243
Query: 253 EQVFEWKIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
Q + ++ DK+ L + + + L ++ +
Sbjct: 244 AQKIHDSQIPEIALLLPLFREVDKEKALEAFSRLRVSNKELKLLEDWYAALPQFLSKQND 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL----QVLSDIIHWKKPLFPLTG 367
+ + + + + I ++ + I + ++
Sbjct: 304 KFFWAHFFASETSSLLLSLFLSMQRSPDEQELFIARIHDLKTRLAAFIERIQSGAPLVSA 363
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D++ GI PG+ +G +L + I +E + LL+
Sbjct: 364 QDLIAKGITPGRLLGELLREAEALSIEHECS-DKEKILSLLK 404
>gi|299538590|ref|ZP_07051873.1| CCA-adding enzyme [Lysinibacillus fusiformis ZC1]
gi|298726177|gb|EFI66769.1| CCA-adding enzyme [Lysinibacillus fusiformis ZC1]
Length = 390
Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats.
Identities = 87/396 (21%), Positives = 153/396 (38%), Gaps = 25/396 (6%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
++ L + ++ IVGGAVRD+L++ D+D+AT LP+ V +F K + I +
Sbjct: 13 VIEQLEQAGFEAVIVGGAVRDALLDRPAHDVDVATNALPEEVKTVFQ----KTVDIGIQH 68
Query: 78 GTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
GT+ +I ++TT R + R V F R K D RRDFT+NA+ + G
Sbjct: 69 GTVLVIVPAGPVEVTTYRTDGEYTDHRRPQNVHFVRSLKEDLQRRDFTMNAIAMRRDGSF 128
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
+DY GG D+ R I+ +G+A R ED LR+LR RF A + +A
Sbjct: 129 VDYYGGQQDIEKRVIRAVGEAEKRFAEDALRMLRAIRFSAQLDFTIEANTLAAIQQRAGD 188
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
I ++KL + I + + G+ + D Q Q + +
Sbjct: 189 LSFIAKERIKAE-LDKLWVGQTVFGGIQKLEDSGLTAYLTGDFQTA---QWHNFQTKDAL 244
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
W +LL+ + + F Y + +
Sbjct: 245 LGWAYFALLQGTAWREVVRDYRLSNKEMAFINSVLTAYDAL------------KDGWTNR 292
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-G 374
++ Y ++ + A + Q + I ++ + + + + G D++K+ G
Sbjct: 293 HYFYYTEQELEAAQYFAQLRQLDASIPQQS--IRELQAKLPIQHRQELVVNGADLLKWSG 350
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G V L ++ Q +E + L +
Sbjct: 351 KKGGPWVKAALEDMLTAILHYELQNDREQIKSWLEQ 386
>gi|38234901|ref|NP_940668.1| putative tRNA nucleotidyltransferase [Corynebacterium diphtheriae
NCTC 13129]
gi|38201166|emb|CAE50890.1| Putative tRNA nucleotidyltransferase [Corynebacterium diphtheriae]
Length = 495
Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats.
Identities = 84/444 (18%), Positives = 160/444 (36%), Gaps = 55/444 (12%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79
+ + +VGG+VRD+L++ D+D T P+ V I + V T I +GT
Sbjct: 48 QAFHDRGHRLYLVGGSVRDALLDELGHDLDCTTDARPEVVSAILEEYAPVVWDTGIEFGT 107
Query: 80 IKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ----QGK 134
+ + +ITT RSD R +V F + D +RRDFT+NA+ + +
Sbjct: 108 VSAEKDGQQIEITTFRSDVYDGQSRNPEVQFGDTLEGDLIRRDFTVNAMAMEILPDGSMQ 167
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
D VGG+NDL + +D LR+LR RF + G ++ A +
Sbjct: 168 FHDPVGGMNDLVAGLLDTPATPQQSFNDDPLRMLRAARFVSQLGF-DLAPRVRHAMTEMA 226
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ--------- 245
+ +++ER+ E++K++ K P + I M + G+ I+ ++ + L Q
Sbjct: 227 DQITRITAERVQVELDKMICGKVPWDGIDVMVDTGLADIIYPEISALRLTQDEHHQHKDV 286
Query: 246 ----LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI----------------------L 279
L+ + +A E D +LR+ L+ K
Sbjct: 287 YAHSLTVLRQAMDQEEDGPDVVLRWAALMHDCGKPDTREFSPEGRVSFHQHEIVGARLMR 346
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIFLALH 336
+ + + + S E Y+ ++ +L +
Sbjct: 347 HRMRALKYSKHTIRDVSELIRLHMRFHGFSEGEWTDSAVRRYVTDAGDLLPRLHKLVRAD 406
Query: 337 YNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385
+ + + + K L G+++++ I G +VG
Sbjct: 407 CTTRNKKKAERLQKTYDHLEDRIADIAAKEDLAKVRPDLDGNEIMEILDIKAGPQVGQAW 466
Query: 386 VHCKQEWINSSFQLSQEDLHHLLR 409
K+ + ++ + L +
Sbjct: 467 KFLKELRLERGPLEREDAILELKK 490
>gi|170747035|ref|YP_001753295.1| polynucleotide adenylyltransferase region [Methylobacterium
radiotolerans JCM 2831]
gi|170653557|gb|ACB22612.1| Polynucleotide adenylyltransferase region [Methylobacterium
radiotolerans JCM 2831]
Length = 412
Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats.
Identities = 110/391 (28%), Positives = 175/391 (44%), Gaps = 10/391 (2%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RY 68
+ +L+ L+ ++ +VGG VRD+L+ DID+ATT P+ VMR +
Sbjct: 14 LERPGVRRVLAALDAPGAETRLVGGCVRDALLGAQTADIDMATTHRPEAVMRAAQRAHGL 73
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
K +PT I +GT+ ++ ++TTLR D+ TDGR+A V F D+ D+ RRDFT+NAL
Sbjct: 74 KAVPTGIEHGTVTLVTEDGPIEVTTLREDVETDGRHAVVRFGTDFLRDAERRDFTVNALS 133
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
G + D VGG DL ++FIGD RI ED LRILRFFRF A +G D+ L
Sbjct: 134 LGADGSLHDPVGGRPDLAAGRVRFIGDPATRIREDALRILRFFRFHARFGAGAPDAAALA 193
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A + A+ L LS ER+ +E KLL A + + G+ I V E+ +L++
Sbjct: 194 ACVAARDSLDRLSRERVRAEFLKLLAAPGGPALVTTLSATGLLARITGGVGELG--RLAR 251
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
A ++ + ++ + + ++ L + L+ + +
Sbjct: 252 AAGA-------GLPPVKRLAALAVGARHDADRLRERLRLSKSEHGHLLGYAEVLADLHGC 304
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
++ + L + L + + P FPL G
Sbjct: 305 AVLDAVAARALAARHGLSCLADTLAILAGEPRPAVTEAARAALRALEGEGASPAFPLAGA 364
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399
D+V G+ PG +G L ++ W+
Sbjct: 365 DLVAAGVAPGPGIGRGLAAARKVWLERGCPT 395
>gi|311030316|ref|ZP_07708406.1| tRNA CCA-pyrophosphorylase [Bacillus sp. m3-13]
Length = 405
Score = 172 bits (435), Expect = 9e-41, Method: Composition-based stats.
Identities = 90/397 (22%), Positives = 173/397 (43%), Gaps = 15/397 (3%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I I+ L + ++ VGG+VRD+LMN + DIDIAT+ P + +F K +
Sbjct: 9 IEIIERLEENGHEAYFVGGSVRDTLMNRVIGDIDIATSATPVEIQALFP----KTVDVGA 64
Query: 76 SYGTIKII-CRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
+GTI +I ++ +++TT R+D R+ +F + + D RRDFT+NA+ ++
Sbjct: 65 EHGTIIVITTEQESYEVTTFRTDGNYTDNRHPDEVIFVKSLEEDLKRRDFTMNAIAMNKH 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
GK+ID G D+ + I+ +G A R ED LR+LR RF + +++++ +
Sbjct: 125 GKIIDPFDGEKDINRQVIRTVGKAKDRFREDALRMLRAVRFASQLSF-SLEAETFLGIQA 183
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ +S ER E+ KL+ + + + G+ FL + + +QL ++ +
Sbjct: 184 DNALLENVSIERKTIEMEKLILGQGVKFGLELLVATGL--HSFLPLLDGKEEQLLKLGDV 241
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ + DK + + LP++I + N K
Sbjct: 242 PLYRLNNRSPVWTVLAYGLKIDKAEVEGFLVSWKLPKKIVKSVAE--NLLLMDKIQHQDW 299
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ Y G + + ++ + L + T + I ++ ++ + G D+++
Sbjct: 300 QSEFVYRAGLERSLEAHQVMVVLGLDEDTSKK--KIYELFENLPIYSLKDIVFDGHDLME 357
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G GK + IL + I+ + + L +
Sbjct: 358 LAGGKRGKWISEILSDMEMALIHEETKNERAALKEWV 394
>gi|116672699|ref|YP_833632.1| metal dependent phosphohydrolase [Arthrobacter sp. FB24]
gi|116612808|gb|ABK05532.1| metal dependent phosphohydrolase [Arthrobacter sp. FB24]
Length = 496
Score = 172 bits (435), Expect = 9e-41, Method: Composition-based stats.
Identities = 85/464 (18%), Positives = 151/464 (32%), Gaps = 59/464 (12%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ D ++ + + +VGG VRD + D+D T PD+ + + K
Sbjct: 14 DFQVDPVVLELGQRFVDAGYELSLVGGPVRDLFLGRRSPDLDFTTDATPDQTLALIRKWA 73
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
++GTI + +ITT R + R V F D LRRDFTINA
Sbjct: 74 DNFWEIGKAFGTIGMRKSGFQIEITTYRAEAYDPESRKPMVAFGSSLTDDLLRRDFTINA 133
Query: 127 LYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ ++ID GG+ DL + G +D LR++R RF A G + D
Sbjct: 134 MALRLPSMELIDPFGGVRDLHASVLATPGAPETSFSDDPLRMMRAARFAAQLG-VAVRGD 192
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
A + + + I+S+ER+ E+ KL+ +P I + + G+ + + +V + L+
Sbjct: 193 VKHAMSQMAERISIISAERVREELVKLICGAHPRVGIDLLVDTGLAEFVLPEVSALRLEA 252
Query: 246 ----------LSQVIEAEQVFEWK---------IDSLLRFIVLISWQDKKSILSM----- 281
+ EQ + D +LRF L+ K +
Sbjct: 253 DEHHRHKDVYQHSLQVLEQAASLETDSDGAVPGPDFVLRFAALMHDVGKPATRRFEPGGA 312
Query: 282 -----------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYG 321
K + + + Y+
Sbjct: 313 VSFRHHDMVGSKLTKKRMKALRFDNDTIKAVARLVELHMRFYGYGEAGWSDSAVRRYVTD 372
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFI----------LQVLSDIIHWKKPLFPLTGDDVV 371
++ +L + + + L + + L G ++
Sbjct: 373 AGPLLERLHRLTRSDVTTRNQRKADRLSFAYDDLEARIAALREQESLEAVRPDLDGGQIM 432
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
G+ PG VG ++ + L LR+ A
Sbjct: 433 ALLGLKPGPVVGKAYKFLLEQRMEHG-PLDPVVAEARLREWWAD 475
>gi|332977064|gb|EGK13868.1| polyA polymerase family protein [Desmospora sp. 8437]
Length = 411
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 87/398 (21%), Positives = 165/398 (41%), Gaps = 12/398 (3%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
+ +L L + ++ VGG VRD L+ D D+ T P +V +F+ K + T I
Sbjct: 9 LQVLERLEEAGFQAYWVGGCVRDELLGREPTDYDVTTDAPPGKVQSLFA----KTVATGI 64
Query: 76 SYGTIKIICRKKYFDITTLRSDL-ITDGRYAKV-VFTRDWKADSLRRDFTINALYADQQG 133
+GT+ ++ +++ ++TT R + D R+ F + + D RRDFTINA+ D++G
Sbjct: 65 RHGTVTVLIQRQAVEVTTFREETGYEDHRHPGQVQFVKRLEMDLARRDFTINAMARDRRG 124
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
++ID GG DLR++ ++ +G+A R ED LR++R RF A G +D A I+
Sbjct: 125 RLIDPFGGRKDLRSQVVRAVGEAEERFREDALRMVRALRFCAQLGF-RLDEQTEAALIRQ 183
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL--DVQEISLDQLSQVIE 251
K L+ L+ ER+ E+ KL P I ++ G+F + + V E
Sbjct: 184 KSLLRHLAVERVTQELEKLWATDKPSQGIRPLWEMGLFPHLPPFTRWDDHIGRPAIPVEE 243
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
++ L + + + + + +++
Sbjct: 244 MDRQMGRWARWALFLHLCGVPPKESGTHLRSFRLPATDVDIIASVHRLGLDWHLTPGEDS 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF--ILQVLSDIIHWKKPLFPLTGDD 369
K+ +G + + + L+ +H ++ + + ++ + G +
Sbjct: 304 TGKQFLLSHGREKLTSALETAAVIHRWGPEEEEEMRRALFRWQQEMPVHHLRQLRVNGRN 363
Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
+V+ G PG G +L ++ E L
Sbjct: 364 LVEATGREPGPWTGRVLDILLKKVALGELPNETEALIE 401
>gi|42523306|ref|NP_968686.1| poly A polymerase [Bdellovibrio bacteriovorus HD100]
gi|39575512|emb|CAE79679.1| poly A polymerase [Bdellovibrio bacteriovorus HD100]
Length = 397
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 99/407 (24%), Positives = 181/407 (44%), Gaps = 26/407 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ +I L + + GG VRD+L+ + D+D+AT P++V +FS K +
Sbjct: 12 PAVESIYHRLQAHGYMAFLAGGCVRDALLGVQAHDLDLATNATPEKVESLFS----KTVN 67
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130
S+G ++++ ++ T R+D +DGR + V + D+ RRDFT+NAL+ D
Sbjct: 68 VGKSFGVMRVLVEGADIEVATFRNDGTYSDGRRPENVVFSSPQEDAQRRDFTVNALFYDL 127
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+V+DYV G DL+ R ++ +GDA R ED+LR+LR RF A ++ A
Sbjct: 128 ATAQVLDYVEGQKDLKARVLRTVGDAERRFEEDHLRLLRAARFSAQLNF-ELEPVSFAAV 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K + +K +S ERI E+ KLL+ ++ + + M + G+ K +F +L +
Sbjct: 187 KKMAEKVKSVSGERIREEMTKLLKTEHADHGLQVMKDSGLMKVLFP-------FRLRKND 239
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ ++ R + + ++ + L R + + + +T+
Sbjct: 240 WVKNSL--ATEAWQRLAMFVRSAQGTELVVVLDMLKLSTRDRRAIEDAWKVWQDPQTVLK 297
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK--PLFPLTGD 368
+ K + + ++ L+I L+ I +L++ W++ P L G+
Sbjct: 298 NSLGKQLQMLAKEGVVFALRILLSEAVEKTA------IEFLLAEWKSWQEVLPRPFLNGE 351
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
DV G G +G L ++ + Q E L L + L S
Sbjct: 352 DVK--GRLTGPAIGVCLDKAFEQQLERQLQSRDEALLWLKKYLERES 396
>gi|325677331|ref|ZP_08156996.1| polyA polymerase family protein [Rhodococcus equi ATCC 33707]
gi|325551794|gb|EGD21491.1| polyA polymerase family protein [Rhodococcus equi ATCC 33707]
Length = 484
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 76/452 (16%), Positives = 165/452 (36%), Gaps = 55/452 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
L + + + + +VGG+VRD+++ D+D T P++V +I
Sbjct: 26 SDVLDPLGARFTEAGHELYLVGGSVRDAVLGRLGTDLDFTTDAHPEQVQQILRGWADNQW 85
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I++GTI +ITT R+D R +V + D +RRDFT+NA+
Sbjct: 86 DTGIAFGTISAAKGADQIEITTYRTDTYDGVTRNPEVQYGTTLDEDLVRRDFTVNAMAVR 145
Query: 131 QQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +D + G++ L + +D LR+LR RF + G +
Sbjct: 146 VDGTGTFEFVDPLNGMDALLAGVLDTPAAPEISFNDDPLRMLRAARFVSQLGF-TLAPRV 204
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-- 244
A ++ ++ +++ER+ +E++KL+ + P++ + M G+ + ++ ++ L+
Sbjct: 205 HEAIVEMSGQIERITAERVRTELDKLILGEFPIDGVNVMCETGLAARVIPEIPQLKLEID 264
Query: 245 -----------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK----------------- 276
L+ + +A + + D +LR+ L+ K
Sbjct: 265 EHHQHKDVYWHSLTVLKQAIDLEDGDPDLVLRWAALLHDIGKPDTKRNEPGGGVSFHHHE 324
Query: 277 -----SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAK 328
+ + +++ + + + Y+ ++ +
Sbjct: 325 VVGAKMVRKRMRALKYSKQMVDEVGQLVFLHLRFHGYGEGQWTDSAVRRYVTDAGDLLPR 384
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + + D+ + L G+ +++ GIP
Sbjct: 385 LHKLVRADCTTRNKRRAAKLQATYDDLERRIARIAEQEDLARVRPDLDGNAIMELLGIPA 444
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G +VG K+ ++ E LL+
Sbjct: 445 GPQVGKAWKFLKELRLDRGPLERDEAEAELLK 476
>gi|15843539|ref|NP_338576.1| polyA polymerase [Mycobacterium tuberculosis CDC1551]
gi|31795080|ref|NP_857573.1| poly(A) polymerase PCNA (polynucleotide adenylyltransferase) (NTP
polymerase) (RNA adenylating enzyme) (poly(A)
polymerase) [Mycobacterium bovis AF2122/97]
gi|57117168|ref|YP_178026.1| poly(A) polymerase [Mycobacterium tuberculosis H37Rv]
gi|121639818|ref|YP_980042.1| Poly(A) polymerase pcnA [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148663774|ref|YP_001285297.1| polyA polymerase [Mycobacterium tuberculosis H37Ra]
gi|148825115|ref|YP_001289869.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis F11]
gi|167969443|ref|ZP_02551720.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis H37Ra]
gi|215405965|ref|ZP_03418146.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis 02_1987]
gi|215413836|ref|ZP_03422501.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis 94_M4241A]
gi|215425170|ref|ZP_03423089.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T92]
gi|218755697|ref|ZP_03534493.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis GM 1503]
gi|224992313|ref|YP_002647003.1| poly(A) polymerase [Mycobacterium bovis BCG str. Tokyo 172]
gi|253800957|ref|YP_003033959.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 1435]
gi|254366445|ref|ZP_04982489.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis str. Haarlem]
gi|254548911|ref|ZP_05139358.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|260184837|ref|ZP_05762311.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis CPHL_A]
gi|260203120|ref|ZP_05770611.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis K85]
gi|289445508|ref|ZP_06435252.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis CPHL_A]
gi|289556175|ref|ZP_06445385.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 605]
gi|289572559|ref|ZP_06452786.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis K85]
gi|289747751|ref|ZP_06507129.1| polyA polymerase [Mycobacterium tuberculosis 02_1987]
gi|289748445|ref|ZP_06507823.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T92]
gi|289764098|ref|ZP_06523476.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis GM 1503]
gi|294995590|ref|ZP_06801281.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis 210]
gi|297636594|ref|ZP_06954374.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 4207]
gi|297733589|ref|ZP_06962707.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN R506]
gi|298527379|ref|ZP_07014788.1| polyA polymerase [Mycobacterium tuberculosis 94_M4241A]
gi|306778272|ref|ZP_07416609.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu001]
gi|306778801|ref|ZP_07417138.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu002]
gi|306786828|ref|ZP_07425150.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu003]
gi|306786957|ref|ZP_07425279.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu004]
gi|306791512|ref|ZP_07429814.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu005]
gi|306795577|ref|ZP_07433879.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu006]
gi|306801552|ref|ZP_07438220.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu008]
gi|306805761|ref|ZP_07442429.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu007]
gi|306970159|ref|ZP_07482820.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu009]
gi|306974390|ref|ZP_07487051.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu010]
gi|307082099|ref|ZP_07491269.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu011]
gi|307086709|ref|ZP_07495822.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu012]
gi|313660920|ref|ZP_07817800.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN V2475]
gi|7478690|pir||D70600 probable polynucleotide polymerase - Mycobacterium tuberculosis
(strain H37RV)
gi|13883916|gb|AAK48390.1| polyA polymerase [Mycobacterium tuberculosis CDC1551]
gi|31620678|emb|CAD96123.1| POLY(A) POLYMERASE PCNA (POLYNUCLEOTIDE ADENYLYLTRANSFERASE) (NTP
POLYMERASE) (RNA ADENYLATING ENZYME) (POLY(A)
POLYMERASE) [Mycobacterium bovis AF2122/97]
gi|38490392|emb|CAE55651.1| PROBABLE POLY(A) POLYMERASE PCNA (POLYNUCLEOTIDE
ADENYLYLTRANSFERASE) (NTP POLYMERASE) (RNA ADENYLATING
ENZYME) (POLY(A) POLYMERASE) [Mycobacterium tuberculosis
H37Rv]
gi|121495466|emb|CAL73954.1| Poly(A) polymerase pcnA [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|134151957|gb|EBA44002.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis str. Haarlem]
gi|148507926|gb|ABQ75735.1| polyA polymerase [Mycobacterium tuberculosis H37Ra]
gi|148723642|gb|ABR08267.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis F11]
gi|224775429|dbj|BAH28235.1| poly(A) polymerase [Mycobacterium bovis BCG str. Tokyo 172]
gi|253322461|gb|ACT27064.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 1435]
gi|289418466|gb|EFD15667.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis CPHL_A]
gi|289440807|gb|EFD23300.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 605]
gi|289536990|gb|EFD41568.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis K85]
gi|289688279|gb|EFD55767.1| polyA polymerase [Mycobacterium tuberculosis 02_1987]
gi|289689032|gb|EFD56461.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T92]
gi|289711604|gb|EFD75620.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis GM 1503]
gi|298497173|gb|EFI32467.1| polyA polymerase [Mycobacterium tuberculosis 94_M4241A]
gi|308213421|gb|EFO72820.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu001]
gi|308328138|gb|EFP16989.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu002]
gi|308328600|gb|EFP17451.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu003]
gi|308336255|gb|EFP25106.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu004]
gi|308339861|gb|EFP28712.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu005]
gi|308343873|gb|EFP32724.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu006]
gi|308347657|gb|EFP36508.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu007]
gi|308351575|gb|EFP40426.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu008]
gi|308352283|gb|EFP41134.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu009]
gi|308356285|gb|EFP45136.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu010]
gi|308360171|gb|EFP49022.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu011]
gi|308363862|gb|EFP52713.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu012]
gi|323717323|gb|EGB26528.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis CDC1551A]
gi|326905740|gb|EGE52673.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis W-148]
gi|328460685|gb|AEB06108.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 4207]
Length = 480
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 86/452 (19%), Positives = 165/452 (36%), Gaps = 55/452 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
H + L + S+ + +VGG+VRD+L+ D+D T P+RV I V
Sbjct: 21 HAALLRELGSVFAAAGHELYLVGGSVRDALLGRLSPDLDFTTDARPERVQEIVRPWADAV 80
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
T I +GT+ + +ITT R+D R+ +V F + D +RRDFT NA+
Sbjct: 81 WDTGIEFGTVGVGKSDHRMEITTFRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAV 140
Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
G+ +D +GGL LR + + +D LR+LR RF + G +
Sbjct: 141 RVTATGPGEFLDPLGGLAALRAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLGF-AVAPR 199
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
A + L +S+ER+ +E++KLL ++P I M G+ + ++
Sbjct: 200 VRAAIEEMAPQLARISAERVAAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRMAI 259
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------- 281
+++ L+ + +A + + D +LR+ L+ K +
Sbjct: 260 DEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHH 319
Query: 282 -----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIA 327
+ +++ + + + Y+ ++
Sbjct: 320 EVVGAKMVRKRMRALKYSKQMIDDISQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGALLP 379
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIP 376
+L + + + + + L G+ ++ IP
Sbjct: 380 RLHKLVRADCTTRNKRRAARLQASYDRLEERIAELAAQEDLDRVRPDLDGNQIMAVLDIP 439
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G +VG + K+ + ++E LL
Sbjct: 440 AGPQVGEAWRYLKELRLERGPLSTEEATTELL 471
>gi|160881945|ref|YP_001560913.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium phytofermentans ISDg]
gi|160430611|gb|ABX44174.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium phytofermentans ISDg]
Length = 459
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 101/444 (22%), Positives = 170/444 (38%), Gaps = 55/444 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ L + VGG VRDSL+ D DI T+ P V +IFS + I T
Sbjct: 9 VNYIIEELMSHGFEGYAVGGCVRDSLLGRIPGDWDITTSANPCEVKQIFS----RTIDTG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ K+ F++TT R D + R+ K +T++ D RRDFTINA+ + +
Sbjct: 65 IKHGTVTVMLGKEGFEVTTYRLDGEYEDNRHPKQVEYTKNLIEDLKRRDFTINAMAYNAK 124
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D GL DL+++ I+ +G A R ED LRILR RF A D +K
Sbjct: 125 DGLVDEFEGLKDLQDKKIRCVGSADQRFDEDALRILRAVRFSAQLNFTIEDETLAAIRLK 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAI----------------VHMYNGGIFKEIFL 236
A K +S+ERI E+NKLL + +P + +
Sbjct: 185 ALNL-KNISAERIREELNKLLLSSHPKKIMIAYETGLTEVILPEFDQMLATKLQGPYQQS 243
Query: 237 DVQEISLDQLSQV-IEAEQVFEWKIDSLLRFIVLISWQ---------------------D 274
V E +L+ L + E K L+ ++
Sbjct: 244 SVGEHTLEALRYFTKNLSKDVEDKKQQLIYCWAILLHDVAKPVIKDNNPQVLNQEHQTKG 303
Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
S+ ++ E + + S +I++ G+K M +
Sbjct: 304 ANIAKSILRRLKFDNETIESVTKLVYYHNFTFGHSKEDIRRATNQIGEKYMPMLFVLQEC 363
Query: 335 LHYNNLT------HQDTCFILQVLSDIIHW----KKPLFPLTGDDVVKYGIPPGKKVGNI 384
+ +D ++ D+I + G D++ G GK +G +
Sbjct: 364 NMQTKDSQVIEEMEKDLKRAKELYQDMIEHGECVSLKSLAVNGKDLMDQGFESGKNIGVL 423
Query: 385 LVHCKQEWINSSFQLSQEDLHHLL 408
L ++ I +++ L +
Sbjct: 424 LDMLLEKVIIDPSLNTKDQLLKIA 447
>gi|120406990|ref|YP_956819.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1]
gi|119959808|gb|ABM16813.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1]
Length = 483
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 79/450 (17%), Positives = 168/450 (37%), Gaps = 56/450 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L + L + +VGG+VRD+L+ D+D T PD+++ + T
Sbjct: 25 LRELGRLFGDHGHQLYLVGGSVRDALLGRLGTDLDFTTDARPDQMLPFLRGWGDALWDTG 84
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
I +GT+ + +ITT R+D R+ +V + + D +RRDFT+NA+
Sbjct: 85 IDFGTLGVAKGGDRLEITTFRADSYDQVSRHPEVRYGDNLADDLVRRDFTVNAMAVRITP 144
Query: 134 ----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ +D + GL LR++ + + +D LR+LR RF + G + A
Sbjct: 145 GGPTEFLDPLDGLAALRDQVLDTPSEPEVSFSDDPLRMLRAARFVSQLGF-AVAPRVRRA 203
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------- 238
+ L +++ER+ +E++KLL +P+ + M G+ + ++
Sbjct: 204 LQEMAPQLSRITAERVAAELDKLLLGADPVAGLNLMVETGLGDVVLPEIGAMRMAIDEHH 263
Query: 239 --QEISLDQLSQVIEAEQVFEWK-IDSLLRFIVLISWQDKKSILSM-------------- 281
+++ L+ + +A + + D +LR+ L+ K +
Sbjct: 264 QHKDVYQHSLTVLRQAMDLEGPEGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHHEVV 323
Query: 282 --------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLK 330
++ +++ + + Y+ ++ +L
Sbjct: 324 GAKMTRKRLRELKYSKQMISDVSQLVYLHLRFHGYGDGRWTDSAVRRYVTDAGPLLGQLH 383
Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGK 379
+ + + D+ + + G+++++ IPPG
Sbjct: 384 KLVRADCTTRNKRRAARLQASYDDLERRIEELAAKEDLARVRPDIDGNEIMRILDIPPGP 443
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+VG H K+ ++ E + LL+
Sbjct: 444 QVGQAWNHLKELRLDRGPLEYDEAVAELLK 473
>gi|111020630|ref|YP_703602.1| tRNA nucleotidyltransferase [Rhodococcus jostii RHA1]
gi|110820160|gb|ABG95444.1| probable tRNA nucleotidyltransferase [Rhodococcus jostii RHA1]
Length = 483
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 82/451 (18%), Positives = 163/451 (36%), Gaps = 55/451 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
L + + +VGG+VRD+++ D+D T P+RV ++ S
Sbjct: 26 SEVLTPLGERFAAAGHELYLVGGSVRDAILGRLGTDLDFTTDAHPERVQKLLSGWADNQW 85
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GTI + +ITT R+D R V F + D +RRDFT+NA+
Sbjct: 86 DTGIEFGTISAAKAGQQIEITTYRADAYDRVSRNPVVQFGTKLEDDLVRRDFTVNAMAVR 145
Query: 131 Q----QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+D +GG+N L + + +D LR+LR RF + G +
Sbjct: 146 IGADGSQDFVDPLGGMNALLAGVLDTPSAPENSFNDDPLRMLRAARFVSQLGFTLHER-V 204
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-- 244
A + ++ +++ER+ +E++KL+ + P++ + M G+ + +V ++ L+
Sbjct: 205 HQAIVDMAPQIERITAERVRAELDKLILGEFPIDGMNVMCETGLADFVLPEVPQMKLEID 264
Query: 245 -----------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK----------------- 276
L+ + +A + + D +LR+ L+ K
Sbjct: 265 EHHQHKDVYWHSLTVLKQAVDLEDGDPDLVLRWAALLHDIGKPDTKRNEPGGGVSFHHHE 324
Query: 277 -----SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAK 328
+ + +++ + + + Y+ ++ +
Sbjct: 325 VVGAKMVRKRMRALKYSKQMVDDVSQLVFLHLRFHGYGKGQWTDSAVRRYVTDAGPLLPR 384
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + + DI + L G+ +++ GIP
Sbjct: 385 LHKLVRADCTTRNKRRAAALQATYDDIEERIARLAEQEDLARVRPDLDGNAIMELLGIPA 444
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G VG + K+ ++ E LL
Sbjct: 445 GPDVGKAWKYLKELRLDRGPLSRDEAEAELL 475
>gi|325847164|ref|ZP_08169963.1| HDIG domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325480944|gb|EGC83990.1| HDIG domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 441
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 101/431 (23%), Positives = 182/431 (42%), Gaps = 43/431 (9%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
I++ L + ++ +VGGAVRD L+ + DID+ T P+ +M IFS K+I +
Sbjct: 6 IINRLEEEGFETYLVGGAVRDKLLGKEIHDIDLTTRARPNDIMNIFSD--LKLIDIGKKF 63
Query: 78 GTIKIICRKKYFDITTLRSDLITDG-RYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135
GTIK+I + K ++ITT R++ R+ + F+ + D RRDFTINA+ +G +
Sbjct: 64 GTIKVIYKSKEYEITTFRAESSYKDKRHPDEISFSNTIEEDLKRRDFTINAMAIR-KGNL 122
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
ID GG DL + I+ +G+ + RI EDYLR LR RF +I+ + A
Sbjct: 123 IDLFGGKKDLERKIIRAVGNPYERIEEDYLRALRAVRFATVLDF-SIEDNLKAAIKNMAG 181
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
++ +S ERI E++K+L AKNP I + + IF +V+++ +
Sbjct: 182 HIEEISKERIRDEVDKILLAKNPSRGIRLLDELNLLAYIFPEVKKMVGFDQHSSHHNLDL 241
Query: 256 FEWKIDSL--------LRFIVLISWQDKKSIL----------------------SMAKKF 285
F+ + L R L K K
Sbjct: 242 FDHTMKVLENCPSNLKTRMAALFHDTGKIDTFFLDENGEGRFFGHQEISEKIMRKRLKVL 301
Query: 286 SLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL--TH 342
P++ + N T + ++KL G++ + + A +
Sbjct: 302 KYPKKFIEDTSLLVQRHMDNTNTYTKKSVRKLLRKVGEENIYDLFDLQRADVLATVHDNT 361
Query: 343 QDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398
++ + L +I++ P +G+D++ G G+++G +L ++
Sbjct: 362 ENIFLAKKYLEEILNSDLPRKEDQIDFSGNDLLDLGFEEGRELGMVLKEVYGLVMDEKLV 421
Query: 399 LSQEDLHHLLR 409
+ ++ ++
Sbjct: 422 NKKSEIIKYIK 432
>gi|215432889|ref|ZP_03430808.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis EAS054]
gi|289756042|ref|ZP_06515420.1| polyA polymerase [Mycobacterium tuberculosis EAS054]
gi|289696629|gb|EFD64058.1| polyA polymerase [Mycobacterium tuberculosis EAS054]
Length = 480
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 85/448 (18%), Positives = 163/448 (36%), Gaps = 55/448 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L + S+ + +VGG+VRD+L+ D+D T P+RV I V T
Sbjct: 25 LRELGSVFAAAGHELYLVGGSVRDALLGRLSPDLDFTTDARPERVQEIVRPWADAVWDTG 84
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ- 132
I +GT+ + +ITT R+D R+ +V F + D +RRDFT NA+
Sbjct: 85 IEFGTVGVGKSDHRMEITTFRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAVRVTA 144
Query: 133 ---GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
G+ +D +GGL LR + + +D LR+LR RF + G + A
Sbjct: 145 TGPGEFLDPLGGLAALRAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLGF-AVAPRVRAA 203
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------- 238
+ L +S+ER+ +E++KLL ++P I M G+ + ++
Sbjct: 204 IEEMAPQLARISAERVAAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRMAIDEHH 263
Query: 239 --QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281
+++ L+ + +A + + D +LR+ L+ K +
Sbjct: 264 QHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHHEVVG 323
Query: 282 -------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
+ +++ + + + Y+ ++ +L
Sbjct: 324 AKMVRKRMRALKYSKQMIDDISQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGALLPRLHK 383
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + + + L G+ ++ IP G +
Sbjct: 384 LVRADCTTRNKRRAARLQASYDRLEERIAELAAQEDLDRVRPDLDGNQIMAVLDIPAGPQ 443
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLL 408
VG + K+ + ++E LL
Sbjct: 444 VGEAWRYLKELRLERGPLSTEEATTELL 471
>gi|145221439|ref|YP_001132117.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK]
gi|145213925|gb|ABP43329.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK]
Length = 497
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 83/453 (18%), Positives = 168/453 (37%), Gaps = 59/453 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL---SVQDIDIATTILPDRVMRIFSKTRYKVI 71
L ++ + + +VGG VRD+L+ D+D T P+++ R +
Sbjct: 36 LRDLGRVFADNGHELYLVGGPVRDALLGRFDPDKNDLDFTTDARPEQMQRFLRGWGDALW 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ + + +ITT R+D R +V F + D +RRDFT+NA+
Sbjct: 96 DTGIEFGTLGVGKGEDRLEITTFRADTYDKVSRNPEVRFGDNLADDLVRRDFTVNAMAVR 155
Query: 131 QQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +D + GL+ LR+ + +D LR+LR RF + G +
Sbjct: 156 VTADGPTEFLDPLDGLSALRDGVLDTPAAPEVSFGDDPLRMLRAARFVSQLGF-TVAPRV 214
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLD 244
A + L +++ER+ +E++KLL +P+ + M + G+ + + +V +++D
Sbjct: 215 RRALEEMSSQLSRITAERVAAELDKLLLGADPVAGLDLMVDTGLGEVVLPEVGAMRMAID 274
Query: 245 QLSQVIEAEQVFEW------------KIDSLLRFIVLISWQDKKSILSM----------- 281
+ Q + Q D +LR+ L+ K +
Sbjct: 275 EHHQHKDVYQHSLTVLRQAMDLEGADGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHH 334
Query: 282 -----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIA 327
++ +++ + + Y+ ++
Sbjct: 335 EVVGAKMTRKRMRELKYSKQMISDVSQLVYLHLRFHGYGDGRWTDSAVRRYVTDAGPLLT 394
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIP 376
+L + + + D+ + + G++++K GIP
Sbjct: 395 RLHKLVRADCTTRNKRRAARLQANYDDLERRIQDLAAREDLARVRPDIDGNEIMKILGIP 454
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
PG +VG H K+ ++ E + L+R
Sbjct: 455 PGPQVGQAWNHLKELRLDRGPLDHDEAVEELVR 487
>gi|289706703|ref|ZP_06503051.1| tRNA adenylyltransferase [Micrococcus luteus SK58]
gi|289556623|gb|EFD49966.1| tRNA adenylyltransferase [Micrococcus luteus SK58]
Length = 483
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 78/455 (17%), Positives = 143/455 (31%), Gaps = 57/455 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ + + +VGG VRD + D+D T PD + +
Sbjct: 24 VVELGRRFEAAGHELSLVGGPVRDLFLGRPSLDLDFTTDADPDASEAVGAGWADATWDVG 83
Query: 75 ISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132
+GTI ++TT R R +V F + D LRRDFT+NA+
Sbjct: 84 RRFGTIGFRKAGWQLEVTTYRAEQYDPASRKPQVAFGDSLEDDLLRRDFTVNAMALRLPA 143
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+++D GG+ DL ++ G +D LR++R RF + G + + A
Sbjct: 144 LELVDPFGGMQDLHAGVLRTPGTPEDSFSDDPLRMMRAARFASQLGF-AVAPEVEQAMTA 202
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------------- 238
+ + I+S+ER+ E+ KL+ +P + + G+ + ++
Sbjct: 203 MAERITIISAERVREELVKLVCGAHPRAGLDLLVRTGLADHVLPELPALQLESDEHHRHK 262
Query: 239 --QEISLDQLSQVIEAEQVFEWK-IDSLLRFIVLISWQDKKSILSM-------------- 281
SL L Q +E E + D +LR L+ K +
Sbjct: 263 DVYAHSLTVLEQAMELEGEYAPSTPDPVLRLAALLHDVGKPATRRFEKGGAVTFRHHETV 322
Query: 282 --------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLK 330
+ + + + Y + ++ +L
Sbjct: 323 GAKLVRKRLRALKFDNDTIKAVARLVELHMRFYGYGDAGWTDSAVRRYAHDAGDLLPRLH 382
Query: 331 IFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK-YGIPPGK 379
+ + D+ L G ++ GI PG
Sbjct: 383 ALTRSDVTTRNRRKAERLAHAYDDLERRIAEIAEAEELAAVRPDLDGQQIMALLGIRPGP 442
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
VG H + ++ + LR+ A
Sbjct: 443 VVGRAYNHLLEWRLDEGPH-EPAEAEAELRRWWAE 476
>gi|168699746|ref|ZP_02732023.1| metal dependent phosphohydrolase [Gemmata obscuriglobus UQM 2246]
Length = 410
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 96/406 (23%), Positives = 168/406 (41%), Gaps = 17/406 (4%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
+ L + GG VRD + L +D D+AT+ P+++ +F + +G
Sbjct: 2 VRTLQSAGFTALWAGGCVRDEFLGLVPEDYDVATSARPEQLRPLFRRRN----EIGAHFG 57
Query: 79 TIKIICRK------KYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+++I K ++ + RSD TDGR V + D+ RRDFT+N ++ D
Sbjct: 58 VVQVIGPKKADGTWHTIEVASFRSDGAYTDGRRPDTVTFSTPEEDAQRRDFTVNGMFFDP 117
Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +++D+VGG DL + ++ IGD R ED LRILR R +G ID A+
Sbjct: 118 VRNELLDFVGGRADLDAKVLRAIGDPFARFTEDKLRILRAARMATRFG-LAIDPTTRDAA 176
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ + ++S+ER+ E+ KL N + + G+ + I ++ S D+ S +
Sbjct: 177 QQMAPQVSVVSAERVAEELRKLFAHPNRTRGLALLRELGLIEPILPELTP-SADRASAAL 235
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
A ++ L F V + + +A++ L L +
Sbjct: 236 AALSEVGGRLPFPLAFAVTLHAVGRAVTERVAERLKLSNVESDRLCWLVANQSVLTDAEV 295
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSDIIHWK-KPLFPLTGD 368
KL L + L + AL +VL D + P LTG
Sbjct: 296 MRPSKLKPLLVHPGIDDLLALHRALATATGGSLAPVEFCTRVLRDTPPEELNPPPVLTGA 355
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
D++ G+ PG +L ++ + ++E H L+ +L+A
Sbjct: 356 DLIARGLKPGPAFKRLLDAVREAQLEGR-AATKEQGHALVTRLLAE 400
>gi|116747757|ref|YP_844444.1| polynucleotide adenylyltransferase region [Syntrophobacter
fumaroxidans MPOB]
gi|116696821|gb|ABK16009.1| Polynucleotide adenylyltransferase region [Syntrophobacter
fumaroxidans MPOB]
Length = 427
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 93/421 (22%), Positives = 177/421 (42%), Gaps = 39/421 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
D++ ++ +L+ +VGGA+RD + + +D D+AT D V+R+F +VIP
Sbjct: 12 PDVMAMMGILSDAGHGVWLVGGALRDHFLGQAPRDFDLATDASADEVVRLFP----RVIP 67
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA-DQ 131
I +GT+++ R + ++T+ + D RRDFTINAL
Sbjct: 68 IGIRHGTVQVHTRTRDVEVTSTPGSGLE-----------GILEDLGRRDFTINALALSYP 116
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+G +D GG ND R ++ +GDA R ED LR+LR FRF + G +++ A+
Sbjct: 117 EGSFLDPHGGCNDADARILRAVGDAGRRFREDPLRVLRVFRFVSELG-LDVEPGTCAAAR 175
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-DQLSQVI 250
GL ++ ER+ E+ ++L N ++A+ M + + + ++ E + +
Sbjct: 176 SEANGLAAVAGERVREEVFRILSGGNAVSALRLMEESRVLRTVLPELHESGCSHAIDTMG 235
Query: 251 EAEQVFEWKIDSLLRFIV-----------LISWQDKKSILSMAKKFSLPREIRYFLISFF 299
++ +LL +V + + ++ L R ++
Sbjct: 236 RCPNRLRIRMAALLHGLVEEEASLGAVSPCGRCVSSRRAEEVMVRWRLSRRQIQGVLGIL 295
Query: 300 NCNF--NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS---- 353
+ + ++++ G + L++ A + +
Sbjct: 296 ENPLPGDSANWTDADLRRFIARTGPEFAGDVLELARACRAAGGDSAGAEQLSGLYRRYRG 355
Query: 354 DIIHWKKPL---FPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
++ P P+TG+DV++ G+ PG +VG IL E I + F ++ L +R
Sbjct: 356 EVELRPVPRLRDLPITGEDVMRITGLKPGPRVGKILERAHLEVIENPFMNERKILMDFIR 415
Query: 410 K 410
K
Sbjct: 416 K 416
>gi|184201989|ref|YP_001856196.1| tRNA nucleotidyltransferase [Kocuria rhizophila DC2201]
gi|183582219|dbj|BAG30690.1| tRNA nucleotidyltransferase [Kocuria rhizophila DC2201]
Length = 478
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 84/473 (17%), Positives = 163/473 (34%), Gaps = 68/473 (14%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M ++ H + + L + + +VGG VRD L+ D+D T PD+ +
Sbjct: 5 MTQLLDTSSLH-PVSLELGRLFERAGHELSLVGGPVRDLLLGREALDLDFTTDASPDQTL 63
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLR 119
+ +GTI + ++TT R++ G R V F D D R
Sbjct: 64 AVIRDWADAHWEIGRDFGTIGMRKAGMQLEVTTYRAEAYDPGSRKPTVAFGDDLTEDLRR 123
Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NA+ +++D GG+ DL ++ G +D LR++R RF + G
Sbjct: 124 RDFTVNAMALRLPGLELVDPFGGIRDLHAGVLRTPGTPEDSFTDDPLRMMRAARFTSQLG 183
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ A + ++I+S+ER+ E+ KL+ +P I M + G+ + + +V
Sbjct: 184 -LTVAEPVREAMTAMAQRIEIVSAERVREELVKLVCGAHPRRGIELMVDTGLAQIVLPEV 242
Query: 239 QEISLDQLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKKSI 278
+ L+ + + V++ D +LRF L+ K +
Sbjct: 243 PALQLET-DEAHHHKDVYQHSLTVMEQAAEKETGPDGPVPAPDFVLRFAALMHDVGKPAT 301
Query: 279 LSM----------------------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIP 311
K + + + + +
Sbjct: 302 RRFEPSGAVSFRHHEVVGAKLTRKRMKALRFDNDTVKKVTRLVELHMRFYGYGEADWTDS 361
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKP 361
+++ GD+ + +L + + ++ +
Sbjct: 362 AVRRYVRDAGDE--LERLHRLTRSDVTTRNRRKASRLAGHYDELERRIAQLAEQEQLQAV 419
Query: 362 LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLS---QEDLHHLLRK 410
L G +++ GIPPG +VG + ++ +E L R+
Sbjct: 420 RPELDGQQIMEILGIPPGPQVGRAYAFLLEMRLDEGAVGEDVARERLLRWARE 472
>gi|218673043|ref|ZP_03522712.1| poly(A) polymerase protein [Rhizobium etli GR56]
Length = 365
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 127/344 (36%), Positives = 194/344 (56%), Gaps = 6/344 (1%)
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ +GT+ ++ K F++TTLR+D+ TDGR AKV F+ DWKAD+ RRD TINALYAD +G
Sbjct: 22 GLQHGTVTLVIDGKPFEVTTLRTDVETDGRRAKVAFSTDWKADAERRDLTINALYADAEG 81
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+V+D VGGL D+ R I+FIGDA RI ED+LRILRFFRFFA+YG D++GL A A
Sbjct: 82 EVVDLVGGLADIETRNIRFIGDAATRIAEDHLRILRFFRFFAYYGSGRPDAEGLKACAAA 141
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
+ LK LS+ER+WSE+ KLL A +P A++ M + EI + + +D + ++ E
Sbjct: 142 RSKLKTLSAERVWSELRKLLGADDPGRALLWMRQVAVLTEILPESERWGIDAIPSLVATE 201
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313
+ W D LLR ++ D + ++A + L L ++ L+
Sbjct: 202 KALGWAPDPLLRLAAIVP-PDAARLEALAARLKLSNAEAATLKAWAITAPVNDELTSAAF 260
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDIIHWKKPLFPLTGD 368
++L Y G + +LK+ L + + + ++L + WKKP FP+ G
Sbjct: 261 ERLLYRNGADGITTRLKLALGVARGKAESDLDEMARSARLGKLLDQAMTWKKPQFPVNGA 320
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
DV+ G P G +VG +L + +W+ +F + L L++L+
Sbjct: 321 DVIAAGTPSGPRVGELLAVLENQWVEENFASDRAALLARLQQLV 364
>gi|297572329|ref|YP_003698103.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Arcanobacterium haemolyticum DSM 20595]
gi|296932676|gb|ADH93484.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Arcanobacterium haemolyticum DSM 20595]
Length = 497
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 81/458 (17%), Positives = 157/458 (34%), Gaps = 62/458 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++ + S+ + + +VGG VRD+L+ L + D D T+ PD + +
Sbjct: 38 KAILELGSIFARNGHELAMVGGPVRDALLGLPIHDYDFTTSARPDETEELLASWGGAHWD 97
Query: 73 TSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130
+GTI ++TT R + + R V + + D RRDFT+NA+
Sbjct: 98 IGREFGTIGASRDGLVVEVTTYRAEEYDAESRKPGVHYGDSLEGDVTRRDFTVNAMAIRL 157
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++ D GGL+DL ++ A +D LRI+R RF A G ++ D A
Sbjct: 158 PSMELADTTGGLDDLVAGVLRTPVTARQSFDDDPLRIMRAARFAAQLGF-DVADDVREAM 216
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-------- 242
+ L+I+S ER+ +E+++L+ + +P + + G+ + ++ +
Sbjct: 217 TEMASRLEIVSVERVQAELHRLMISPHPRKGLELLVETGVADIVLPELSNLQDTVDEHGR 276
Query: 243 -----------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM---------- 281
LDQ + + D +LRF L+ K +
Sbjct: 277 HKDVYTHTLTVLDQAIALETDADGAVPRPDFILRFAALMHDIGKPATRRYESDGSVTFHA 336
Query: 282 ------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
K + + + Y+ +
Sbjct: 337 HDIVGARMAAKRMKALRFDKATTKAVARLVELHLRFHGYGEQRWSDSAVRRYVTDAGPQL 396
Query: 327 AKLKIFLALHYNNLTHQDTCFI----------LQVLSDIIHWKKPLFPLTGDDVVK-YGI 375
+L + ++ + +L + L G +++ G+
Sbjct: 397 ERLNRLTRADVTTRNRRKAQWLAAGMDDLEERIALLKEQEEVDAIRPDLDGGKIMELLGL 456
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
PG +VG + + +E R+L+A
Sbjct: 457 TPGPEVGKAYKFLLELRMEEGPLGEEEA----ARRLLA 490
>gi|227500200|ref|ZP_03930269.1| possible tRNA adenylyltransferase [Anaerococcus tetradius ATCC
35098]
gi|227217722|gb|EEI83026.1| possible tRNA adenylyltransferase [Anaerococcus tetradius ATCC
35098]
Length = 451
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 102/435 (23%), Positives = 179/435 (41%), Gaps = 43/435 (9%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I++ L + ++ VGG VRDSL++L + D+DI + P+ + ++FS + K+I
Sbjct: 11 EKIINRLKENGFEAYPVGGCVRDSLLDLEISDVDITSNARPEEIEKVFSSS--KLIDIGK 68
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYADQQG 133
+GTIKII F++TT R++ R + + D RRDFTINA+ D+ G
Sbjct: 69 KFGTIKIIDFGYEFEVTTFRAESAYRDRRHPEKISFADNIYDDLKRRDFTINAMAFDR-G 127
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
++ID GG DL + I+ +GDA RI ED LR +R RF + G I+ + A
Sbjct: 128 ELIDPFGGRLDLEKKIIRAVGDAKERIDEDLLRSMRAVRFASRLGF-TIEESLMEAIRAK 186
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
+ ++S ERI E++K+L + P I + GI EI ++ +
Sbjct: 187 ACEINLISKERIGEELSKILISDRPSYGIRLLDVAGILSEILPELYKTKGFDQHSSYHQY 246
Query: 254 QVFEWKI--------DSLLRFIVLISW----------------------QDKKSILSMAK 283
V+E + D + RF L + + +
Sbjct: 247 DVYEHSLHVLANTSKDLVTRFAALYHDVGKIDTFFLDERGEGRFFGHQKLSDQMLKKRLR 306
Query: 284 KFSLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
+ + + + S I+KL G+ + + A
Sbjct: 307 ALKFSNKFIEDASMLVARHMDCSNSYSKKSIRKLLRRMGEVNLRRLFDLQRADIRATNHP 366
Query: 343 Q------DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
+ +VL+D + K+ + G D++ G P GK +G +L ++E +
Sbjct: 367 DTSNIDLGEELLCEVLADDLPKKRSDLAINGSDLLALGYPQGKIIGELLSKIEEEILEEK 426
Query: 397 FQLSQEDLHHLLRKL 411
+ + + L ++
Sbjct: 427 LKNEKSAIVEFLTRM 441
>gi|308496537|ref|XP_003110456.1| hypothetical protein CRE_05412 [Caenorhabditis remanei]
gi|308243797|gb|EFO87749.1| hypothetical protein CRE_05412 [Caenorhabditis remanei]
Length = 479
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 109/421 (25%), Positives = 187/421 (44%), Gaps = 30/421 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L+ + L K + I GGAVRD LMN+ D+D A+T P ++ +F + +
Sbjct: 48 LFTPQLLKLRDLFAKRNYEIRIAGGAVRDLLMNIHPADVDFASTATPTQMKEMFEEENIR 107
Query: 70 V-IPTSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ +GTI + + F+ITTLR D++ DGR A+V +T DW+ D+ RRD TIN+L
Sbjct: 108 MLHKRGEEHGTITCRIDEAENFEITTLRIDVVCDGRRAEVKYTTDWQQDANRRDLTINSL 167
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ D G V+DY GG+ D+ +R + F+GDA RI EDYLRILR+ G +
Sbjct: 168 FLDLHGNVVDYFGGIADIESRRVAFVGDARQRIQEDYLRILRYESQQFLIGSNSFRYFRF 227
Query: 188 VAS---------------IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
I K G+ +S+ERIW+E+ K++ + + M +
Sbjct: 228 FGRISNTPEHEADTIQAIIDNKDGMAGISAERIWTELKKIVVGRMADIVVKSMIEQCQLQ 287
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
+ + +L++ +V F ++ + L +++ ++ K S +
Sbjct: 288 KYLGLPENCNLNRFQKVFT---RFPKCVEPMTMIACLCEEEEQIALFHKITKLSNDERLL 344
Query: 293 YFLISFFNC----NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
I N + I I +L G + + +L++ L ++ +
Sbjct: 345 GEFILRERNAAIENLDNNDWWIDRIVELEVRPGHENQLDRLRLRLVQLARSVLADE---- 400
Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+ + I + P FP+T D++ + G V N+L + W S F ++E L
Sbjct: 401 -ERIQMIEKFVAPQFPITAQDLIDLQKVRRGPHVRNVLFYLLDLWKASRFTETRETLLEH 459
Query: 408 L 408
Sbjct: 460 A 460
>gi|328793093|ref|XP_397254.4| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial-like,
partial [Apis mellifera]
Length = 400
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 117/411 (28%), Positives = 197/411 (47%), Gaps = 45/411 (10%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L + L K + I GGAVRD LM++ D+D AT P+ + +F K +
Sbjct: 26 IFTPELNILAELFKKYNYELKIAGGAVRDILMDIKPLDLDFATDATPEEMKTMFVKENVR 85
Query: 70 VIPT-SISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI K F+ITTLR D TDGRYAK+ FT+DWK D+LRRD TIN++
Sbjct: 86 MINNRGERHGTITARINDKQNFEITTLRIDTHTDGRYAKIKFTKDWKLDALRRDLTINSM 145
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSD 185
+ D +GK+ DY G +DL+ R + F+G+ HRI EDYLRILR+FRF+ E+ D
Sbjct: 146 FLDFEGKIYDYFFGYDDLQKRRVVFVGNPSHRIKEDYLRILRYFRFYGRIAEQPDVHDES 205
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
++A + GL+ +S ERIWSE +K+L + M I + + L + +++
Sbjct: 206 TIIAIKENIHGLQRISGERIWSEWSKILSGNYAKELTLKMLKCNIARYVGLP-ENPNIEN 264
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
V + + + + V++ ++ + + + L R +
Sbjct: 265 FKIVYDVFKKNNISLQPITFLAVMLKDEN--EVFQLHNRLKLSAYDRDLALFLTRYWE-- 320
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
DK I LK + + H N + FP+
Sbjct: 321 ----------------DKPSIDLLKFYKSPHCNTHPRK-------------------FPV 345
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+G+ + ++ + GK +G ++ K W++ +F+++ E+L H + ++I+ +
Sbjct: 346 SGNMLKQH-VKKGKMMGIVIKELKNIWLDKNFEMNAEELLHEVPRIISELE 395
>gi|225873814|ref|YP_002755273.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Acidobacterium capsulatum ATCC 51196]
gi|225792662|gb|ACO32752.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Acidobacterium capsulatum ATCC 51196]
Length = 462
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 90/465 (19%), Positives = 170/465 (36%), Gaps = 60/465 (12%)
Query: 2 VSIVQHKWFHDSD---LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58
I + +I++ L ++ GG VRD L+ +D D+ T PD
Sbjct: 4 TPIPFSSFPASPAFRAAAHIVAHLRAHGYEAYFAGGCVRDMLLGHPPKDYDVTTRARPDV 63
Query: 59 VMRIFSKTRYKVIPTSISYGTIKI--ICRKKY--FDITTLRSDLIT-DGRYAKVVFT-RD 112
V+ +F + +G + + + ++ T RSD DGR V
Sbjct: 64 VLALFP----RTYAVGAHFGVVLVADEIDGQPITTEVATFRSDGAYLDGRRPSEVAFADR 119
Query: 113 WKADSLRRDFTINALYADQQGK---------VIDYVGGLNDLRNRTIKFIGDAHHRILED 163
+ D LRRDFTIN + D + V+D+V G DL ++ IG A R ED
Sbjct: 120 PEDDVLRRDFTINGMLLDPEKWQQTGSLDDAVLDFVDGRADLSAGIVRAIGHAERRFTED 179
Query: 164 YLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223
LR+LR RF A +G ++ + A + G+ +S ER+ E+ ++L + +A
Sbjct: 180 KLRMLRAVRFAARFGY-ELEPETFAALRQLAPGIAQVSRERVRDELTRMLTEGHARHAFE 238
Query: 224 HMYNGGIFKEIFLDVQEIS-----------LDQLSQVIEAEQVFEWKIDSLLRFIVLISW 272
+ G+ +E+ ++ + D + + + L + L+
Sbjct: 239 LLDASGLLREVLPEIDRLHGVEQPPQYHPEGDVWVHTLLLLEKLAPGCPATLAWGALLHD 298
Query: 273 QDKKSILSM---------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
K + ++ + +++ + +
Sbjct: 299 VGKPATFERAPDRIRFSGHVEVGVKIAAEICRRLRFSNDETEQILALVENHMRFGDIQRM 358
Query: 312 EI---KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ K+ F L G + +I + +LT + Q + +P +TG
Sbjct: 359 KPSTLKRFFRLPGFDEHLELHRIDCLSSHGDLTLYEFAQ-QQYHALPPEAVRPPLLVTGR 417
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
D+++ G PG + L + + S+E+ L+R+ A
Sbjct: 418 DLIEAGYQPGPQFRQWLALAEDAQLEGRIH-SREEGLALIREAAA 461
>gi|239918793|ref|YP_002958351.1| tRNA adenylyltransferase [Micrococcus luteus NCTC 2665]
gi|281414981|ref|ZP_06246723.1| tRNA adenylyltransferase [Micrococcus luteus NCTC 2665]
gi|239840000|gb|ACS31797.1| tRNA adenylyltransferase [Micrococcus luteus NCTC 2665]
Length = 483
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 80/455 (17%), Positives = 144/455 (31%), Gaps = 57/455 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ + + +VGG VRD + D+D T PD + +
Sbjct: 24 VVELGRRFEAAGHELSLVGGPVRDLFLGRPSPDLDFTTDADPDASEAVGAGWADATWDVG 83
Query: 75 ISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132
+GTI ++TT R R +V F + D LRRDFT+NA+
Sbjct: 84 RRFGTIGFRKAGWQLEVTTYRAEQYDPASRKPQVAFGDSLEDDLLRRDFTVNAMALRLPA 143
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+++D GG+ DL ++ G +D LR++R RF + G + + A
Sbjct: 144 LELVDPFGGMRDLHAGVLRTPGTPEDSFSDDPLRMMRAARFASQLGF-AVAPEVEQAMTA 202
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------------- 238
+ + I+S+ER+ E+ KL+ +P + + G+ I ++
Sbjct: 203 MAERITIISAERVREELVKLVCGAHPRAGLDLLVRTGLADHILPELPALQLESDEHHRHK 262
Query: 239 --QEISLDQLSQVIEAEQVFEWK-IDSLLRFIVLISWQDKKSILSM-------------- 281
SL L Q +E E + D +LR L+ K +
Sbjct: 263 DVYAHSLTVLEQAMELEGEYAPSTPDPVLRLAALLHDVGKPATRRFEKGGAVTFRHHETV 322
Query: 282 --------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLK 330
+ + + + Y + ++ +L
Sbjct: 323 GAKLVRKRLRALKFDNDTIKAVARLVELHMRFYGYGDAGWTDSAVRRYAHDAGDLLPRLH 382
Query: 331 IFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK-YGIPPGK 379
+ + D+ L G ++ GI PG
Sbjct: 383 ALTRSDVTTRNRRKAERLAHAYDDLERRIAEIAEAEELAAVRPDLDGQQIMALLGIRPGP 442
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
VG H + ++ Q + LR+ A
Sbjct: 443 VVGRAYSHLLEWRLDEGPH-EQAEAEAELRRWWAE 476
>gi|295398570|ref|ZP_06808602.1| poly A polymerase [Aerococcus viridans ATCC 11563]
gi|294973171|gb|EFG48966.1| poly A polymerase [Aerococcus viridans ATCC 11563]
Length = 426
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 82/413 (19%), Positives = 164/413 (39%), Gaps = 23/413 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I+ LN+ ++ VGGAVRD L++L + D+DIAT+ P V +F +
Sbjct: 10 AAPIIHTLNEAGYEAYFVGGAVRDLLLDLPIHDVDIATSAYPAEVQALFPRH----FDVG 65
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ +GTI + + ++ITT R++ R KV F ++ + D LRRDFTINAL +
Sbjct: 66 LDHGTIMVWFEGETYEITTFRTESTYQDYRRPDKVTFVQNLEEDLLRRDFTINALAMNPD 125
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
K++DY G DL ++ I+ +G+ H R ED LR++R RF + + + +
Sbjct: 126 HKIVDYFHGQKDLADKVIRAVGNPHDRFNEDGLRMMRGVRFASQLDFQIAPETLVAIAEN 185
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL--DVQEISLDQLSQVI 250
A + I +NKL N + + + + + D + + D L
Sbjct: 186 AGILVHIAVERIAVE-MNKLWIGVNWHKGLDYFLETDLIQYVPYLADYKAVFTDLLDYTS 244
Query: 251 EAEQVFEWKIDSLLRFIVLISWQD-------KKSILSMAKKFSLPREIRYFLISFFNCNF 303
+ Q+ L F ++ + K + + + + ++++ +
Sbjct: 245 DQVQIPNENFAWALFFWRAFERNGKEDLAAIQQQVREFTKAWKMSNKAQKDILAYLDILI 304
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ------DTCFILQVLSDIIH 357
+ + + L+ D++++ + I + + + + +
Sbjct: 305 YRAQAAEWTLADLYGRDPDQLVLVEGFIEAQQAAGQKSFKAIFNQSKVQTVQDLFDQLPI 364
Query: 358 WKKPLFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ G D+ + + +G +L +Q + + L L
Sbjct: 365 HSLRDLAINGQDIVQEINPRNKRAIGQMLQFLEQAVVAQDVVNDRAALLAYLD 417
>gi|322437026|ref|YP_004219238.1| metal dependent phosphohydrolase [Acidobacterium sp. MP5ACTX9]
gi|321164753|gb|ADW70458.1| metal dependent phosphohydrolase [Acidobacterium sp. MP5ACTX9]
Length = 456
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 88/447 (19%), Positives = 160/447 (35%), Gaps = 55/447 (12%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
I+ L ++ GG VRD L+ + +D D+AT+ PD++ +F + +
Sbjct: 7 AARKIVQTLRSAGHQAFFAGGCVRDLLLGKTPKDFDVATSATPDQITALFP----RTLQV 62
Query: 74 SISYGTIKIICR----KKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINAL 127
+G I + ++ T R D +DGR V F+ D + D LRRDFTIN +
Sbjct: 63 GAHFGVILVQMDVEGEPTSTEVATFRHDGAYSDGRRPDAVRFSTDPREDVLRRDFTINGM 122
Query: 128 -----YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
++D+VGG NDL + I+ IG R ED LR+LR RF A I
Sbjct: 123 LLDPFAEGSDNAILDFVGGRNDLAVKIIRTIGSPDTRFEEDKLRMLRAVRFAARLSF-AI 181
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI- 241
D + A + + +S+ERI E+ +L N A +Y G+ I + + +
Sbjct: 182 DPNTAAAITRHAAEIFQVSNERIRDELTLMLTEGNAHRAFELLYQTGLLHHILPEAERMI 241
Query: 242 ----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS-------------- 277
D + L + +L+ K +
Sbjct: 242 GVQQPPQYHPEGDVWVHTLLLLDHLFAGASPTLAWGMLLHDIGKPATFQPPNPAKPGDRI 301
Query: 278 ------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
S+ + + +++ + + + L
Sbjct: 302 RFNGHVETGVRIAESILARLRFSNDDTAQILALIQNHMRFGDILHMKQSTLKRFLRLPHF 361
Query: 326 IAKLKIFLALHYNNLTHQDTCFI--LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383
L + A ++ + Q S +P LTG D++ G P + +
Sbjct: 362 EEHLALHRADCLSSHARLELYDFAKTQYESHDPEQIRPTLLLTGRDLIAAGYRPSPQFKS 421
Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLRK 410
+L + + ++ +H ++++
Sbjct: 422 MLERAEDAQLEGILHSLEDAIHLIIKE 448
>gi|260893598|ref|YP_003239695.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Ammonifex degensii KC4]
gi|260865739|gb|ACX52845.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Ammonifex degensii KC4]
Length = 473
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 90/462 (19%), Positives = 168/462 (36%), Gaps = 67/462 (14%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
LI +L +L + ++ +VGGAVRD L+ D+D+AT+ P V+ + + K +
Sbjct: 8 PLIKVLKMLEEAGFEAYVVGGAVRDYLLGKPPVDLDVATSARPQEVLDLVVQKGLKAVTY 67
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYADQ 131
++G + ++ ++ T RS++ + + + D RRDFTINA+ D
Sbjct: 68 GAAFGVVGVLVEGSLVEVATFRSEVYGEDPHRPEKVDFLGRLEEDLARRDFTINAMAMDL 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+GK+ D GG DLR R I+ +G+ R ED LR R RF A G + ++ A
Sbjct: 128 RGKLYDPFGGQEDLRRRIIRAVGNPIKRFQEDALRAFRACRFAAQLGYQ-VEPRTRSALS 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN------GGIFKEIFLDVQEISLDQ 245
+ K+ + LS ER+ EI ++L + P + K + Q L +
Sbjct: 187 QVKERVARLSVERVRDEIERILISDYPNVGFELLREAGLLLSFCRRKNKGREEQVPILPE 246
Query: 246 LSQVIEAEQVFE-WKIDSLLRFIVLISWQDKKSILSM----------------------- 281
L+++ Q + D + ++ + L
Sbjct: 247 LARLYGVAQNPRYHQYDVWGHTMAVLQNCPPQIALRWAALLHDVAKGLPGVRKLNRRGEL 306
Query: 282 ----------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL-----Y 320
++ + +I + + L + K +
Sbjct: 307 CDHRHEVHSAQIAARILRRLRVRPQIARRAVFLIRHHMFLPGLKERNVIKWISRLAGEFH 366
Query: 321 GDKVMIAKLKIFLALHYNNLT--HQDTCFILQVLSDIIH----------WKKPLFPLTGD 368
+ + L AL +L + L+ L ++ + LTG
Sbjct: 367 NRRELETALDELFALRRADLEGGKVEAEKRLRELEELRQLVEEILTRLPFYPSDLALTGK 426
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
D+V + G ++G +E + +E L + +
Sbjct: 427 DLVTL-LGEGPQIGKAQRELLREVQSGRLPNEREALWRFVER 467
>gi|291303867|ref|YP_003515145.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Stackebrandtia nassauensis DSM 44728]
gi|290573087|gb|ADD46052.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Stackebrandtia nassauensis DSM 44728]
Length = 473
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 88/464 (18%), Positives = 162/464 (34%), Gaps = 55/464 (11%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M + ++ + + + +VGG VRD+++ D+D AT+ P+
Sbjct: 1 MSDRIGNEISVPPVADALGEVFAAAGHELHLVGGPVRDAILRRDTVDLDFATSAHPEVTQ 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLR 119
I + + T +GTI + R ++TT R+D R +V + + D R
Sbjct: 61 AILEEHSSTIWTTGREFGTIGAMFRGHRVEVTTFRADTYDGVSRNPQVAYGDNLTDDLRR 120
Query: 120 RDFTINALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINA+ + D GGL DL +TI+ G +D LR++R RF + G
Sbjct: 121 RDFTINAMAVSVPGHEFSDPFGGLTDLAQQTIRTPGTPEDSFADDPLRMMRAARFTSQLG 180
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+D A + ++ +S+ER+ E KL+ +P+ + + G+ +E ++
Sbjct: 181 FH-VDPAVKTAMTNMARDIERISAERVRDEFVKLMGGTDPVPGLRLLVATGLAEEFLPEL 239
Query: 239 -------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS-------- 277
+++ L+ V A + E D LLR L+ K
Sbjct: 240 PALRMAIDEHAQHKDVYEHTLTVVRNAMSLEEDGPDVLLRIAALLHDIGKPETKGIGPDG 299
Query: 278 --------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLY 320
K P++ + + E Y+
Sbjct: 300 RVTFHHHEVAGARIARKRLKALKFPKDDIGAICHLIALHLRFYGYGRGEWTDSAVRRYVT 359
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDV 370
++ +L + + + + K L G+++
Sbjct: 360 DAGAVLPRLHKLVRSDCTTRNKRKAARLAADYDALEERISRIAAEEDLAKVRPDLNGEEI 419
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQE---DLHHLLRK 410
+ I PG +VG H K+ + +E L R+
Sbjct: 420 MTLLEIKPGPQVGKAWKHLKELRLEQGPLSREEAETALFAWARE 463
>gi|297570022|ref|YP_003691366.1| polynucleotide adenylyltransferase region [Desulfurivibrio
alkaliphilus AHT2]
gi|296925937|gb|ADH86747.1| Polynucleotide adenylyltransferase region [Desulfurivibrio
alkaliphilus AHT2]
Length = 885
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 72/410 (17%), Positives = 135/410 (32%), Gaps = 21/410 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L I + + + ++ VGG VRD L+ DID+ + ++ +
Sbjct: 470 LRTIGEVAQERKYRAFAVGGFVRDLLLQEKNFDIDVVIEGDGMVFAKALAERLKGRVRVH 529
Query: 75 ISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ T + D+ T R + V K D RRDFTINA+
Sbjct: 530 KKFKTAVVKLPDGLKVDVATARLEYYDYPAAMPTVELSSLKLDLYRRDFTINAMAIHLNP 589
Query: 134 KVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVAS 190
+ + +N + +ED RI R RF G ++ L+ +
Sbjct: 590 DTFGTLVDFFNSQNDLKDHKIRVLHNLSFVEDPTRIFRAIRFEQRMGFTIGQHTERLIKN 649
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-----EISLDQ 245
R + E+ +L +NPL AI M + + + ++ +L++
Sbjct: 650 AVRMNLFDRFFGYRFFGELKGILSEENPLPAIRRMADLHLLPFLHPRLKLEPRLTKNLEE 709
Query: 246 LSQVIEAEQVF---EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF---LISFF 299
+ Q+ E + L+ + L + + ++F +P R +
Sbjct: 710 SQAALAWYQLLYRDEPCRNWLVYLLALTVNLKRSELQDFCQRFEVPERNRQQLLGEKTAA 769
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
++P+ Y + L LA+ + + LS +
Sbjct: 770 QQAATVLRRALPDSNSGIYHLLAGLGPEGLLYLLAISRKKAAKKAISLYVTELSQV---- 825
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
L G D+ G PG IL ++ + +E+L + R
Sbjct: 826 --RPELNGHDLKVLGYQPGPIFRQILDQLLDARLDGQVRNREEELVFVRR 873
>gi|329938655|ref|ZP_08288051.1| RNA nucleotidyltransferase [Streptomyces griseoaurantiacus M045]
gi|329302146|gb|EGG46038.1| RNA nucleotidyltransferase [Streptomyces griseoaurantiacus M045]
Length = 488
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 82/462 (17%), Positives = 164/462 (35%), Gaps = 61/462 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +VGG+VRD+L+ D+D T P+ V+RI V
Sbjct: 27 SPAADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLRIVRPWADAVW 86
Query: 72 PTSISYGTIKIICR--------KKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDF 122
I++GT+ + + ++TT RS+ R +V + + D +RRDF
Sbjct: 87 DVGIAFGTVGVQKDARVGDTVQRFQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDF 146
Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T+NA+ + + ID GL+DL R ++ G +D LR++R RF A
Sbjct: 147 TVNAMAVALPEKEFIDPHHGLDDLAARVLRTPGTPEESFSDDPLRMMRAARFAAQLDF-E 205
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ D + A + ++I+S+ER+ E+NKLL + +P + + G+ + + ++ +
Sbjct: 206 VAPDVVAAMKEMAGRIEIVSAERVRDELNKLLLSAHPRKGLTLLVETGLAQYVLPELPAL 265
Query: 242 SLDQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKK------------ 276
L++ L + +A + E D LR L+ K
Sbjct: 266 RLERDEHHRHKDVYDHTLIVLEQAIALEEDGPDLTLRLAALLHDIGKPRTRRFEQDGRVS 325
Query: 277 ----------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDK 323
E+ + + E Y+
Sbjct: 326 FHHHEVVGAKMTKKRMTALKYSNELVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAG 385
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVVK- 372
++ +L + + + + L G+ ++
Sbjct: 386 PLLERLHKLTRSDCTTRNKRKATALSRAYDGLEARIAQLQEQEQLDSIRPDLDGNQIMGI 445
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
G+ PG VG H + + + + ++ L++ ++
Sbjct: 446 LGVRPGPVVGKAYQHLLELRLENG-PMEHDEAVAALKEWWSA 486
>gi|315446809|ref|YP_004079688.1| tRNA adenylyltransferase [Mycobacterium sp. Spyr1]
gi|315265112|gb|ADU01854.1| tRNA adenylyltransferase [Mycobacterium sp. Spyr1]
Length = 486
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 83/453 (18%), Positives = 169/453 (37%), Gaps = 59/453 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL---SVQDIDIATTILPDRVMRIFSKTRYKVI 71
L ++ + + +VGG VRD+L+ D+D T P+++ R+ +
Sbjct: 25 LRDLGRVFADNGHELYLVGGPVRDALLGRFDPDKNDLDFTTDARPEQMQRVLRGWGDALW 84
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ + + +ITT R+D R +V F + D +RRDFT+NA+
Sbjct: 85 DTGIEFGTLGVGKGEDRLEITTFRADTYDKVSRNPEVRFGDNLADDLVRRDFTVNAMAVR 144
Query: 131 QQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +D + GL+ LR+ + +D LR+LR RF + G +
Sbjct: 145 VTADGPTEFLDPLDGLSALRDGVLDTPAAPEVSFGDDPLRMLRAARFVSQLGF-TVAPRV 203
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLD 244
A + L +++ER+ +E++KLL +P+ + M + G+ + + +V +++D
Sbjct: 204 RRALEEMSSQLSRITAERVAAELDKLLLGADPVAGLDLMVDTGLGEVVLPEVGAMRMAID 263
Query: 245 QLSQVIEAEQVFEW------------KIDSLLRFIVLISWQDKKSILSM----------- 281
+ Q + Q D +LR+ L+ K +
Sbjct: 264 EHHQHKDVYQHSLTVLRQAMDLEGADGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHH 323
Query: 282 -----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIA 327
++ +++ + + Y+ ++
Sbjct: 324 EVVGAKMTRKRMRELKYSKQMISDVSQLVYLHLRFHGYGDGRWTDSAVRRYVTDAGPLLT 383
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIP 376
+L + + + D+ + + G++++K GIP
Sbjct: 384 RLHKLVRADCTTRNKRRAARLQANYDDLERRIQDLAAREDLARVRPDIDGNEIMKILGIP 443
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
PG +VG H K+ ++ E + L+R
Sbjct: 444 PGPQVGQAWNHLKELRLDRGPLDHDEAVEELVR 476
>gi|259046862|ref|ZP_05737263.1| poly A polymerase [Granulicatella adiacens ATCC 49175]
gi|259036485|gb|EEW37740.1| poly A polymerase [Granulicatella adiacens ATCC 49175]
Length = 409
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 87/409 (21%), Positives = 163/409 (39%), Gaps = 36/409 (8%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L L K ++ VGG+VRD ++ + D+DIAT+ P+ V +FS +
Sbjct: 18 AALPVLQTLKKAGHEAVFVGGSVRDLVLGKEISDVDIATSATPEEVKSLFSH----TVDV 73
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG-RYAK-VVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ +I + +++TT R++ R+ V F R + D +RRDFTINAL +
Sbjct: 74 GIEHGTVLVIYHQDSYEVTTFRTEGTYQDFRHPDSVTFVRSLEEDLMRRDFTINALAIND 133
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
Q +++DY GL DL N I+ +G+ R ED LR++R RF G +I
Sbjct: 134 QEEIVDYFDGLKDLENSIIRCVGNPMERFNEDALRMMRAIRFAGQLG----------FTI 183
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
++K I + + IV ++ F S + E
Sbjct: 184 ESKTFNAIRVLKSNLERVAVERMKVEFEKMIVSLHRSNAFLAFIESDLYQSCPDFTNSRE 243
Query: 252 AEQ---VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR-EIRYFLISFFNCNFNQKT 307
+ F S+L+ VL ++ ++ S+ + K + + K
Sbjct: 244 TLKKIGEFPVSSMSILQAWVLFAYYNQLSVSELKKVLKNWKSSNEQISETLIGYQTFLKR 303
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
L + Y +++ I + L ++ + QV + + G
Sbjct: 304 LDKEWDSFMAYECTERIAIEIEGLLPGLGRT----ENHNILTQVYKTLPIHSMQDIQIDG 359
Query: 368 DDVVKYGIPP-------GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+G+ G K+G +L ++ +++ + ++ +R
Sbjct: 360 -----FGVKEALKLEKMGPKIGKVLQAVEKAILSNKLKNENHEIVDWIR 403
>gi|317495207|ref|ZP_07953577.1| poly A polymerase head domain-containing protein [Gemella
moribillum M424]
gi|316914629|gb|EFV36105.1| poly A polymerase head domain-containing protein [Gemella
moribillum M424]
Length = 382
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 98/415 (23%), Positives = 181/415 (43%), Gaps = 36/415 (8%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M +I + K+ I+IL ++ K ++ VGG VRD L+++ DID+ T LP++V
Sbjct: 1 MQNIFEQKFGK---AIDILKIIEKNGYEAYFVGGCVRDYLLDVDFSDIDVTTNALPEQVK 57
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSL 118
IF K I T + +GT+ +I + + ++ITT R++ A F R+ K D
Sbjct: 58 EIF----GKTIDTGLQHGTVTVIFKGEAYEITTFRTESDYSNHRAPDKVEFVRNLKEDLD 113
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDFTINA+ D +G + D+ G+ DL+N I+ + + R ED LR+LR FRF +
Sbjct: 114 RRDFTINAMAMDSRGVIYDFHNGVTDLKNGVIRTVNNPSERFYEDSLRMLRAFRFSSKLN 173
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I+ A K K ++ +S ERI SE KLL N++ + + I K
Sbjct: 174 F-EIEESTFFAIKKNAKLIEFVSVERIVSEFKKLLVGVGCKNSLEKLISSEIHKY----- 227
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ L + + + + L ++ + D + L + +
Sbjct: 228 ----IPFLKYIKTYQDLSPYTFTQSLYYLSYFNNIDSVELKK----LKLSNIEIKQIKKY 279
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
N + + + E+ + Y + + + ++F T L++ S
Sbjct: 280 ENIKYALDSNTPLEL--ILYKHEKEDVQFVSELFKYYT----TEYIANIRLKIHSFYDVE 333
Query: 359 KKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+T +++ + PG + +I+ ++ + + +E++ L K+
Sbjct: 334 ------ITSKEIIDTINLKPGPWIKDIISQIEKNILLNKLNNRKEEIIDFLLKIK 382
>gi|307699928|ref|ZP_07636979.1| tRNA adenylyltransferase [Mobiluncus mulieris FB024-16]
gi|307614966|gb|EFN94184.1| tRNA adenylyltransferase [Mobiluncus mulieris FB024-16]
Length = 486
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 87/460 (18%), Positives = 158/460 (34%), Gaps = 59/460 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + + + +VGG VRD+L+ + D+D+ T+ P+ + + V
Sbjct: 18 PLVAPLGDVFTGAGFEIALVGGPVRDALLGQAPHDLDLTTSARPEEIETVLRPWADAVWD 77
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130
++GTI F+ITT R D R V F + D RRDFT+NA+
Sbjct: 78 VGRNFGTIGARKGDAIFEITTYRCDEYQRDSRKPLVKFGDTLEGDLWRRDFTVNAMALRL 137
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D GG DL + ++ +D LRI+R RF A G +ID L A
Sbjct: 138 PEMTLVDPTGGERDLEQQMLRTPISPEESFNDDPLRIMRAARFAAQLGF-DIDYSVLTAM 196
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------ 238
++ L+I+S ERI +E ++LL + P + M + ++ ++
Sbjct: 197 QDMRERLQIVSRERIQAEFSRLLVSPWPRRGLELMVYTDVAAQVVPELMELRDMQDEHKR 256
Query: 239 ----QEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM---------- 281
E SL L Q I E + + D +LR L+ K +
Sbjct: 257 HKDVWEHSLIVLEQAIAQETGPDGPVPEPDLVLRLAALLHDIGKPATRRFEGGGVVTFHQ 316
Query: 282 ------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
++ + + + Y+ ++
Sbjct: 317 HDVVGAKIARRRLRELKYDKATIRDVSRLIALHQRFHGYGEQPWTDSAVRRYVTDAGPLL 376
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK-YGI 375
+L + + D+ L G ++++ GI
Sbjct: 377 QRLHRLTRADCTTRNVRKAERLSAAYDDLEARIAALQAKEELDAVRPELDGSEIMEILGI 436
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
PG +VG + + + +E +LR+
Sbjct: 437 SPGPQVGKAYKYLLAYRMENGLV-GRETAETVLREWWEKC 475
>gi|225386499|ref|ZP_03756263.1| hypothetical protein CLOSTASPAR_00246 [Clostridium asparagiforme
DSM 15981]
gi|225047418|gb|EEG57664.1| hypothetical protein CLOSTASPAR_00246 [Clostridium asparagiforme
DSM 15981]
Length = 401
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 104/404 (25%), Positives = 172/404 (42%), Gaps = 18/404 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ I+ LN+ ++ IVGG VRD L+N D DI T+ LP +V +F + + T
Sbjct: 8 PVERIIGQLNEHGYEAYIVGGCVRDMLLNREPGDWDITTSALPGQVKELFH----RTVDT 63
Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131
I +GT+ ++ K+ +++TT R D DGR+ K V FT + D RRDFTINA+ ++
Sbjct: 64 GIQHGTVTVMVGKEGYEVTTFRVDGEYEDGRHPKSVSFTPNLTEDLKRRDFTINAMAYNK 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+D GG+ DLR I+ +G+ R ED LRILR RF A G I+ A
Sbjct: 124 ATGFVDEFGGVEDLRRGIIRCVGEPMDRFTEDALRILRAIRFSAQLGF-EIEERTQEAIR 182
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L +S ER+ E+ KLL + +P I +Y GI + + EI I
Sbjct: 183 VIAPNLAKVSKERVQVELTKLLCSAHPER-IALVYETGISRYVSGTFDEIYGMGTIPPIP 241
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ LR+ + ++ K L + + + + P
Sbjct: 242 TAIPPQKH----LRWAAFLRKATPDQAFTVLKDLKLDNDTISRVKTLVDLLGRPLVPEKP 297
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALH------YNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
++++ + L + AL ++ + ++ D +
Sbjct: 298 ALRRVMSRIEPALYDDLLDLKDALLPFGVPETGDMLRRARALSGEIRRDGDCLDLKSLAV 357
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G DV+ G+ PGK VG L + + + +++ L L+
Sbjct: 358 KGRDVMDAGVKPGKAVGEALAVLLELVLEDPSRNTRDYLLQHLK 401
>gi|269977721|ref|ZP_06184681.1| tRNA adenylyltransferase [Mobiluncus mulieris 28-1]
gi|269934025|gb|EEZ90599.1| tRNA adenylyltransferase [Mobiluncus mulieris 28-1]
Length = 486
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 87/460 (18%), Positives = 158/460 (34%), Gaps = 59/460 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + + + +VGG VRD+L+ + D+D+ T+ P+ + + V
Sbjct: 18 PLVAPLGDVFTGAGFEIALVGGPVRDALLGQAPHDLDLTTSARPEEIETVLRPWADAVWD 77
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130
++GTI F+ITT R D R V F + D RRDFT+NA+
Sbjct: 78 VGRNFGTIGARKGDAIFEITTYRCDEYQRDSRKPLVKFGDTLEGDLWRRDFTVNAMALRL 137
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D GG DL + ++ +D LRI+R RF A G +ID L A
Sbjct: 138 PEMTLVDPTGGERDLEQQMLRTPISPEESFNDDPLRIMRAARFAAQLGF-DIDYSVLTAM 196
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------ 238
++ L+I+S ERI +E ++LL + P + M + ++ ++
Sbjct: 197 QDMRERLQIVSRERIQAEFSRLLVSPWPRRGLELMVYTDVAAQVVPELMDLRDMQDEHKR 256
Query: 239 ----QEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM---------- 281
E SL L Q I E + + D +LR L+ K +
Sbjct: 257 HKDVWEHSLIVLEQAIAQETGPDGPVPEPDLVLRLAALLHDIGKPATRRFEGGGVVTFHQ 316
Query: 282 ------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
++ + + + Y+ ++
Sbjct: 317 HDVVGAKIARRRLRELKYDKATIRDVSRLIALHQRFHGYGEQPWTDSAVRRYVTDAGPLL 376
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK-YGI 375
+L + + D+ L G ++++ GI
Sbjct: 377 QRLHRLTRADCTTRNVRKAERLSAAYDDLEARIAALQAKEELDAVRPELDGSEIMEILGI 436
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
PG +VG + + + +E +LR+
Sbjct: 437 SPGPQVGKAYKYLLAYRMENGLV-GRETAETVLREWWEKC 475
>gi|258515317|ref|YP_003191539.1| Polynucleotide adenylyltransferase region [Desulfotomaculum
acetoxidans DSM 771]
gi|257779022|gb|ACV62916.1| Polynucleotide adenylyltransferase region [Desulfotomaculum
acetoxidans DSM 771]
Length = 877
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 73/414 (17%), Positives = 156/414 (37%), Gaps = 20/414 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L + GG VRD+L+ + D+D+ + R S+ +
Sbjct: 466 LQEAGKTAAEMGYNVYTAGGIVRDALLGVESLDVDLVVEGNGILLARALSEKSGAFLRVH 525
Query: 75 ISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA---- 129
+GT +I D+ T R + V + K D RRDFTINA+
Sbjct: 526 EKFGTAEICFPNGLQIDVATARVEFYEYPAALPEVESSSLKQDLYRRDFTINAMAVILGE 585
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
++ G +ID G +DL ++ + + +ED RILR RF Y + +
Sbjct: 586 ERFGDLIDPFDGRDDLYKGLVRVLH--NLSFVEDPTRILRALRFEQRYHMRIEQQTLSLL 643
Query: 190 SIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ-LS 247
K G+ + +S ER+W E+ ++ NP+ + + ++ IF ++ + LS
Sbjct: 644 RRAVKDGMLERVSVERLWEELKHIMAENNPVKILQRLAEVEAWQYIFPGIEYWDIQPVLS 703
Query: 248 QVIEAEQVFE-----WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ EA + + L ++ ++ ++ ++++L +
Sbjct: 704 NLPEAIALLKEHGQPEPEPWLPYWLSILHRSQPAMAENLCQRYNLSKRQSVMTRQIVEML 763
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ L + KL + + L L +Q+ L+ + +
Sbjct: 764 PDIVKLLQNKKIKLSEAADILLSVPVEAYALLLSLLPGDYQE-----HFLNLLEAMQTNK 818
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ G+++ K G PG +L ++ ++ +++++ +++ + +
Sbjct: 819 PCIGGEEIKKLGYRPGPIYKQVLDALRRARLDGQINSTEDEIV-FVKEFLRECK 871
>gi|255691214|ref|ZP_05414889.1| polyA polymerase family protein [Bacteroides finegoldii DSM 17565]
gi|260623126|gb|EEX45997.1| polyA polymerase family protein [Bacteroides finegoldii DSM 17565]
Length = 478
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 78/453 (17%), Positives = 164/453 (36%), Gaps = 59/453 (13%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + + +VGG VRD + +DID+ + K + +
Sbjct: 20 KIAETADTLGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKHLGRGAHVSVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133
++GT ++ + + R + +V + D RRDFTINAL
Sbjct: 80 KNFGTAQVKYKGTEVEFVGARRESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKG 139
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GGL D++ +TI+ D +D LR++R RF G ID D +
Sbjct: 140 RFGELVDPFGGLEDMKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLGFY-IDDDTFDSL 198
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241
+ K ++I+S ERI E+NK++ + P + + G+ IF ++ +
Sbjct: 199 CRNKDRIEIISRERIADELNKIILSPIPSKGFIDLDRSGLLPLIFPELAALQGVETRNGR 258
Query: 242 --SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----AKKFSLPREI-RYF 294
+ + + + + + LR+ L+ K F I
Sbjct: 259 SHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPVTKRWEPKAGWTFHNHNFIGEKM 318
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AKLKIFLALH 336
+ + F + ++K+ L+ ++I + + L
Sbjct: 319 IPNIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMTLC 378
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++ + L++ + P++G+++++ +G+ P ++VG
Sbjct: 379 EADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRIRNFQPPVSGEEIMETFGLQPCREVG 438
Query: 383 NILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
+ K ++ E +K+
Sbjct: 439 TLKSAIKDAILDGVIPNEYEAARTFMLARAKKM 471
>gi|227876518|ref|ZP_03994630.1| possible tRNA adenylyltransferase [Mobiluncus mulieris ATCC 35243]
gi|227843059|gb|EEJ53256.1| possible tRNA adenylyltransferase [Mobiluncus mulieris ATCC 35243]
Length = 486
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 87/460 (18%), Positives = 158/460 (34%), Gaps = 59/460 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + + + +VGG VRD+L+ + D+D+ T+ P+ + + V
Sbjct: 18 PLVAPLGDVFTGAGFEIALVGGPVRDALLGQAPHDLDLTTSARPEEIETVLRPWADAVWD 77
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130
++GTI F+ITT R D R V F + D RRDFT+NA+
Sbjct: 78 VGRNFGTIGARKGDAIFEITTYRCDEYQRDSRKPLVKFGDTLEGDLWRRDFTVNAMALRL 137
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D GG DL + ++ +D LRI+R RF A G +ID L A
Sbjct: 138 PEMTLVDPTGGERDLEQQMLRTPISPEESFNDDPLRIMRAARFAAQLGF-DIDYSVLTAM 196
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------ 238
++ L+I+S ERI +E ++LL + P + M + ++ ++
Sbjct: 197 QDMRERLQIVSRERIQAEFSRLLVSPWPRRGLELMVYTDVAAQVVPELMDLRDMQDEHKR 256
Query: 239 ----QEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM---------- 281
E SL L Q I E + + D +LR L+ K +
Sbjct: 257 HKDVWEHSLIVLEQAIAQETGPDGPVPEPDLVLRLAALLHDIGKPATRRFEAGGVVTFHQ 316
Query: 282 ------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
++ + + + Y+ ++
Sbjct: 317 HDVVGAKIARRRLRELKYDKATIRDVSRLIALHQRFHGYGEQPWTDSAVRRYVTDAGPLL 376
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK-YGI 375
+L + + D+ L G ++++ GI
Sbjct: 377 QRLHRLTRADCTTRNVRKAERLSAAYDDLEARIAALQAKEELDAVRPELDGSEIMEILGI 436
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
PG +VG + + + +E +LR+
Sbjct: 437 SPGPQVGKAYKYLLAYRMENGLV-GRETAETVLREWWEKC 475
>gi|302390046|ref|YP_003825867.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermosediminibacter oceani DSM 16646]
gi|302200674|gb|ADL08244.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermosediminibacter oceani DSM 16646]
Length = 449
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 84/440 (19%), Positives = 159/440 (36%), Gaps = 50/440 (11%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I LN ++ +VGGA+RD ++ D DIAT LP+R+ IF+ IP
Sbjct: 11 VKQICLELNTRGHQAFVVGGALRDIILGRESPDYDIATDALPERIASIFADA----IPYG 66
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
++GT+ +I ++T R GR F D RRDFTIN++ D
Sbjct: 67 -NFGTMLLIRGNTKIEVTPFR--DDAPGRKPHYTFGGTIYTDLARRDFTINSMAYDPITG 123
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
G + + R+ ED LR LR RF A G I+ + +
Sbjct: 124 QFIDPFGGLNDLKARTIRCTGSTKRVWEDPLRALRAARFQAQLGF-AIEPSTMYSLKAYA 182
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
L +S ERI E++KL+ + +P + +V + G+ I ++ E + +
Sbjct: 183 SMLDTISRERIRDELSKLITSDHPFDGLVTLVVTGLMNYIIPELMEGMGMR--HFNKPAD 240
Query: 255 VFEWKIDSLLR-----------------------------FIVLISWQDKKSILSMAKKF 285
V E + + + ++ + K
Sbjct: 241 VLEHNLLACRYVKNSLHLRLAALLHDVGKPGCAVEGKKGLEFPGHHLKSVETAKHILKNL 300
Query: 286 SLPREIRYFLISFFNCNF--NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN----- 338
+ ++ + + E ++L G + + +++ +A
Sbjct: 301 RFDSKTIKKVLLLIEHHMFVYSPDSPLSEARRLISRVGWQNIYDLIELRMADRLASGFNE 360
Query: 339 ---NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWIN 394
+ + ++ + +K ++G ++++ GI G VG +L ++ I
Sbjct: 361 AAGPGLKKLINDLEELKKENSDYKIKDLAVSGKELIETLGIRSGPIVGKLLNRLLEDVIE 420
Query: 395 SSFQLSQEDLHHLLRKLIAS 414
+ S+ L L K +
Sbjct: 421 NPELNSKRTLLELAEKYLKE 440
>gi|329944766|ref|ZP_08292845.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328529902|gb|EGF56792.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 503
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 77/441 (17%), Positives = 154/441 (34%), Gaps = 58/441 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L + + + +VGG VRD+ + ++ D+D+ T+ P++ I
Sbjct: 43 PALAALGHAFVRAGHEIALVGGPVRDAFLGVAPHDLDLTTSARPEQTEEILKAWGETTWD 102
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130
++GTI ++TT R++ G R +V + D RRDFT+NA+
Sbjct: 103 VGRAFGTIGARKGSTIVEVTTYRTEDYEVGSRKPQVTYGDTLTGDLTRRDFTVNAMALRL 162
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GGL+DL + ++ A +D LRI+R RF A G +++ D + A
Sbjct: 163 PDLELVDPCGGLSDLASGVLRTPVSAEQSFDDDPLRIMRAARFSAQLGF-DVEMDVMAAM 221
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------ 238
+ L+I+S+ER+ +E+ +LL + P + + + G+ + ++
Sbjct: 222 EEMAPRLEIVSAERVRAELERLLIGRWPRRGLELLVHTGVADVVLPELSALRETVDEHRR 281
Query: 239 ----QEISLDQLSQVIEAEQVFEWK---IDSLLRFIVLISWQDKKSILSMAKK------- 284
E +L L Q ++ E + D +LR ++ K +
Sbjct: 282 HKDVYEHTLTVLDQAVDLETGPDGPVPGPDLVLRLAAILHDIGKPATRRFLPDGTVTFHG 341
Query: 285 ---------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
++ + + + Y ++
Sbjct: 342 HDHVGARMTAKRLRALRFDKQTIKDVSRLVELHLRFHGYADAAWSDSAVRRYATDAGPLL 401
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVV-KYGI 375
+L + + + D+ L G ++ + G+
Sbjct: 402 ERLHRLTRADVTTRNRRKAAMLDRAYDDLEERIESLRAAEELAAIRPDLDGGQIMAELGV 461
Query: 376 PPGKKVGNILVHCKQEWINSS 396
PPG VG +
Sbjct: 462 PPGPIVGEAYRFLMDLRMERG 482
>gi|326772861|ref|ZP_08232145.1| tRNA adenylyltransferase [Actinomyces viscosus C505]
gi|326637493|gb|EGE38395.1| tRNA adenylyltransferase [Actinomyces viscosus C505]
Length = 504
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 82/461 (17%), Positives = 160/461 (34%), Gaps = 59/461 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L + + + +VGG VRD+ + ++ D+D+ T+ P++ +I +
Sbjct: 44 PALAALGHAFVRAGHEIALVGGPVRDAFLGVAPHDLDLTTSARPEQTEKILAAWGETTWD 103
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130
++GTI ++TT R++ G R +V + D RRDFT+NA+
Sbjct: 104 VGRAFGTIGARKGSTIVEVTTYRTEAYEVGSRKPQVTYGDTLTGDLTRRDFTVNAMALRL 163
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GGL DL ++ A +D LRI+R RF A G +++ D + A
Sbjct: 164 PDLELVDPCGGLADLNAGVLRTPVSAEQSFDDDPLRIMRAARFAAQLGF-DVEMDVMTAM 222
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------ 238
+ L+I+S+ER+ +E+ +LL + P + M + G+ + ++
Sbjct: 223 EEMAPRLEIVSAERVRAELERLLISPWPRRGLELMVHTGVADVVLPELSALRETVDEHKR 282
Query: 239 ----QEISLDQLSQVIEAEQVFEWK---IDSLLRFIVLISWQDKKSILSMAKK------- 284
E +L L Q I+ E + D +LR ++ K +
Sbjct: 283 HKDVYEHTLTVLDQAIDLETGPDGPVPGPDLVLRLAAILHDIGKPATRRFLPDGTVTFHG 342
Query: 285 ---------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
++ + + Y ++
Sbjct: 343 HDHVGARMTAKRLRALRFDKQTIKDVSRLVELHLRFHGYVDAAWSDSAVRRYATDAGPLL 402
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVV-KYGI 375
+L + + + D+ L G ++ + G+
Sbjct: 403 ERLHRLTRADVTTRNRRKAAMLDRAYDDLEERIEALRAAEELAAIRPDLDGGQIMAELGV 462
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
PG VG + + ++ LR A+ Q
Sbjct: 463 APGPVVGEAYRFLMDLRMEKG-PIGEDLARQALRSWWAARQ 502
>gi|227834346|ref|YP_002836053.1| tRNA nucleotidyltransferase [Corynebacterium aurimucosum ATCC
700975]
gi|227455362|gb|ACP34115.1| tRNA nucleotidyltransferase [Corynebacterium aurimucosum ATCC
700975]
Length = 545
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 88/451 (19%), Positives = 168/451 (37%), Gaps = 55/451 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
++ + +VGG+VRD+L+ D+D T PD V I + V T I +
Sbjct: 97 LVERFALHDAPLYLVGGSVRDALLGRLGNDLDFTTPARPDVVYSILEEWAETVWDTGIDF 156
Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ---- 132
GT+ + + +ITT RSD R +V++ + D +RRDF +NA+ + +
Sbjct: 157 GTVSAAYKGQQIEITTFRSDSYDGQSRNPEVMYGDTLEGDLVRRDFKVNAMAIELRSDGT 216
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D +GGL+DL R + +D LR+LR RF A E ++ A I
Sbjct: 217 REFHDPMGGLDDLAKRILDTPDAPEISFHDDPLRMLRAARFAAQL-EFDVAQRVRDAMID 275
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------------Q 239
++ ++ ER+ E+NKL+ P I + + GI +F ++ +
Sbjct: 276 MAGEIQRITVERVQVELNKLICGTAPWKGIDLLVDSGIADYVFPEIPALRMAPDEHAQHK 335
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------------I 278
++ L+ + +A + E D +LR+ L+ K
Sbjct: 336 DVYAHSLTVLRQAMEQEEEGPDLILRWAALLHDIGKPDTRDTTDGKVSFHHHEVVGAKLT 395
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIFLAL 335
+K P+ + + + Y+ ++ +L +
Sbjct: 396 RKRLRKLKFPKATTEDIGQLVYLHMRFHGFGDGQWTDSAVRRYVTDAGDLLPRLHKLVRA 455
Query: 336 HYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKKVGNI 384
+ + + + + L G+++++ G+ PG +VG
Sbjct: 456 DCTTRNERKARRLQRTYDQLEERIADIAAKEDLARVRPDLDGNEIMEILGLEPGPEVGKA 515
Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ K+ + L +E LR+ S
Sbjct: 516 WSYLKELRLEEG-PLEREVAIAKLREWWNSR 545
>gi|312142006|ref|YP_004009342.1| polynucleotide adenylyltransferase [Rhodococcus equi 103S]
gi|311891345|emb|CBH50666.1| putative polynucleotide adenylyltransferase [Rhodococcus equi 103S]
Length = 484
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 77/452 (17%), Positives = 165/452 (36%), Gaps = 55/452 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
L + + + + +VGG+VRD+++ D+D T P+RV +I
Sbjct: 26 SDVLDPLGARFTEAGHELYLVGGSVRDAVLGRLGTDLDFTTDAHPERVQQILRGWADNQW 85
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I++GTI +ITT R+D R +V + D +RRDFT+NA+
Sbjct: 86 DTGIAFGTISAAKGADQIEITTYRTDTYDGVTRNPEVQYGTTLDEDLVRRDFTVNAMAVR 145
Query: 131 QQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +D + G++ L + +D LR+LR RF + G +
Sbjct: 146 VDGTGTFEFVDPLNGMDALLAGVLDTPAAPEISFNDDPLRMLRAARFVSQLGF-TLAPRV 204
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-- 244
A ++ ++ +++ER+ +E++KL+ + P++ + M G+ + ++ ++ L+
Sbjct: 205 HEAIVEMSGQIERITAERVRTELDKLILGEFPIDGVNVMCETGLAARVIPEIPQLKLEID 264
Query: 245 -----------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK----------------- 276
L+ + +A + + D +LR+ L+ K
Sbjct: 265 EHHQHKDVYWHSLTVLKQAIDLEDGDPDLVLRWAALLHDIGKPDTKRNEPGGGVSFHHHE 324
Query: 277 -----SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAK 328
+ + +++ + + + Y+ ++ +
Sbjct: 325 VVGAKMVRKRMRALKYSKQMVDEVGQLVFLHLRFHGYGEGQWTDSAVRRYVTDAGDLLPR 384
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + + D+ + L G+ +++ GIP
Sbjct: 385 LHKLVRADCTTRNKRRAAKLQATYDDLERRIARIAEQEDLARVRPDLDGNAIMELLGIPA 444
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G +VG K+ ++ E LL+
Sbjct: 445 GPQVGKAWKFLKELRLDRGPLERDEAEAELLK 476
>gi|254384792|ref|ZP_05000129.1| RNA nucleotidyltransferase [Streptomyces sp. Mg1]
gi|194343674|gb|EDX24640.1| RNA nucleotidyltransferase [Streptomyces sp. Mg1]
Length = 480
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 80/454 (17%), Positives = 159/454 (35%), Gaps = 53/454 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + + +VGG+VRD+L+ D+D T P+ V++I V
Sbjct: 27 APVADELGRRFQEAGFRLALVGGSVRDALLGRLGNDLDFTTDAHPEDVLKIVRPWADSVW 86
Query: 72 PTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I++GT+ ++TT R R +V + + D +RRDFT+NA+
Sbjct: 87 DVGIAFGTVGAHKLGFQIEVTTYRSESYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVA 146
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + +D GGL DL+ ++ G +D LR+LR RF A + + + A
Sbjct: 147 LPEKEFVDPHGGLEDLQAGILRTPGTPEDSFSDDPLRMLRAARFAAQLDF-EVAPEVVAA 205
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----- 244
++I+S+ER+ E+NKLL + NP + + + G+ + ++ + L+
Sbjct: 206 MTAMADRIEIVSAERVQGELNKLLLSPNPRKGLGLLVDSGLADHVLPELPALRLESDEHH 265
Query: 245 --------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-------------------- 276
L + +A + E D +LR L+ K
Sbjct: 266 RHKDVYDHSLIVLEQAIALEEDGPDLVLRLAALLHDIGKPRTRRFESDGRVSFHHHEVVG 325
Query: 277 --SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
++ + + E Y+ ++ +L
Sbjct: 326 AKMTKKRMTALKYSNDMIKDVSRLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLERLHK 385
Query: 332 FLALHYNNLTHQDTCFI----------LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380
+ + ++ L + L G+++ + G+ PG
Sbjct: 386 LTRSDCTTRNKRKANALSRTYDGLEERIEQLKEQEQLDAIRPDLDGNEIQQVLGVGPGPV 445
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+G + + + E L++ A+
Sbjct: 446 IGKAYAFLLDLRLENG-PMGHEAAVTALKEWWAA 478
>gi|117929346|ref|YP_873897.1| metal dependent phosphohydrolase [Acidothermus cellulolyticus 11B]
gi|117649809|gb|ABK53911.1| metal dependent phosphohydrolase [Acidothermus cellulolyticus 11B]
Length = 525
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 88/454 (19%), Positives = 161/454 (35%), Gaps = 54/454 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L + G + +VGG++RD+L+ V D+D+AT+ PD V+++
Sbjct: 31 PMLDELGQRFAHGGHELALVGGSIRDALLERPVVDLDLATSARPDEVLKLAKGWAESQWE 90
Query: 73 TSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130
T I++GT+ + + + +ITT R R V + D RRDFT+NA+
Sbjct: 91 TGIAFGTVGLRKDRYHLEITTYRAERYDPTSRKPAVEYGESLLDDLKRRDFTVNAIALTL 150
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +++D G+ DL R I G +D LR+LR RF A G +
Sbjct: 151 PEHELVDPFDGIRDLLRRRITTPGRPEDSFSDDPLRMLRAARFAAQLGFTVDPHVVAAMT 210
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
A + +S+ERI E KLL A P +V + + G+ ++ + + +
Sbjct: 211 AMAARLDV-VSAERIRDEFTKLLLAPEPRRGLVLLVDTGLADRFLPELPALRRLEADREY 269
Query: 251 EAEQVFEW--------------KIDSLLRFIVLISWQDKKSILS---------------- 280
+ V+E + D +LR L+ K +
Sbjct: 270 RHKDVYEHTLTVLDQAIALEDGEPDLVLRLAALLHDIGKPATRRKEPDGRVSFHHHEVVG 329
Query: 281 ------MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
P+++ + + E + L
Sbjct: 330 KKLAKARLTALKFPKDVVNDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPLLDRLHK 389
Query: 335 LHYNNLTHQDTCF-------------ILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380
L ++ T ++ ++ L L G ++ + GIPPG +
Sbjct: 390 LTRSDCTTRNKKKAAALQAAYDSLVQRIEALRRQEEIDAIRPELNGHEIGEILGIPPGPE 449
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+G + + + +E+ +LR+ A
Sbjct: 450 LGRAYRFLLELRLERG-PIGKENAAAVLREWAAE 482
>gi|227506205|ref|ZP_03936254.1| possible tRNA adenylyltransferase [Corynebacterium striatum ATCC
6940]
gi|227197229|gb|EEI77277.1| possible tRNA adenylyltransferase [Corynebacterium striatum ATCC
6940]
Length = 467
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 87/449 (19%), Positives = 169/449 (37%), Gaps = 53/449 (11%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+ ++ +VGG+VRD+L++ D+D T P+ V I V T I +
Sbjct: 21 LAEQFRARGNRLYLVGGSVRDALLSRLGHDLDFTTDARPEVVQEILDGWAETVWDTGIDF 80
Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ---G 133
GT+ + + + +ITT RSD D R +VVF + D +RRDF +NA+ + +
Sbjct: 81 GTVSAVYKGQQIEITTFRSDSYDGDSRNPEVVFGDSLEGDLVRRDFKVNAMAIELKEDGY 140
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+ D +GGL DL+N+ + +D LR+LR RF + E ++ A +
Sbjct: 141 EFHDPMGGLTDLKNKILDTPDKPEISFHDDPLRMLRAARFASQL-EFDVAERVKTAMTEM 199
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
++ ++ ER+ E++KL+ KNP I + + GI IF ++ + + +
Sbjct: 200 AGEIRRITVERVQVELDKLMLGKNPETGIELLVDTGILDHIFPEIPALRMAPDEHAQHKD 259
Query: 254 ------------QVFEWKIDSLLRFIVLISWQDKKS---------------------ILS 280
E + D +LR+ L+ K +
Sbjct: 260 VYAHSLTVLRQAIDQEEEPDLILRWAALLHDVGKPDTRDTTDGKVTFHHHEVVGAKLVRK 319
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIFLALHY 337
+K P+ + + + Y+ ++ +L +
Sbjct: 320 RLRKLKYPKATIEAIGQLVYLHMRFHGFGEGQWTDSAVRRYVTDAGDLLPRLHKIVRADC 379
Query: 338 NNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKKVGNILV 386
+ + + + + L G+++++ G+ PG +VG
Sbjct: 380 TTRNAKKARRLQRTYDHLEERIAEIAAKEDLARVRPDLDGNEIMEILGLNPGPEVGQAWS 439
Query: 387 HCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ K+ + L ++ LR+ S
Sbjct: 440 YLKELRLEEG-PLERDVAIAKLREWWESR 467
>gi|197122792|ref|YP_002134743.1| tRNA cytidylyltransferase [Anaeromyxobacter sp. K]
gi|196172641|gb|ACG73614.1| tRNA cytidylyltransferase [Anaeromyxobacter sp. K]
Length = 436
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 93/424 (21%), Positives = 166/424 (39%), Gaps = 30/424 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKV 70
++++L L+ +S +VGGAVRD L++ D D+AT P +VM +F +V
Sbjct: 14 EAILDVLRRLSAAGHRSWLVGGAVRDLLLHRPRAATDFDVATPATPRQVMALFR----RV 69
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALY 128
IPT I +GT+ ++ + ++TT R + T + +AD RRDFT+NA+
Sbjct: 70 IPTGIDHGTVTVLVGDEKVEVTTFRGEGDYVDGRRPASVTFLAELEADLARRDFTMNAMA 129
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D Q D G D+ R I+ +G+ R ED LR +R RF A G + +
Sbjct: 130 YDPLQADFRDPFDGRVDMSRRRIRAVGEPAARFGEDGLRAMRAVRFAAQLGYRLDPATRA 189
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ +S ER+ E+++L+ A + +A++ + G+ + + + L
Sbjct: 190 AIPGALEVVR-KVSVERVAEELSRLVLAAHAGSALLLLRRTGLLGVVLPAIAALPLAAYR 248
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN------- 300
+ + + LR L+ + + LPR + + +
Sbjct: 249 HAVAVVR--HAPAEPALRLAALLHGVGPEEASKIVFGLRLPRRLSDEVGTLVRAYACPAA 306
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ + +I++ G + + A ++ A + +V
Sbjct: 307 RHPAALPDAPADIRRWLARTGPQRVPAVFELVSAELRTLSPARRAAVAPEVSRARAAIDA 366
Query: 361 P----------LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
L G V+ G PG VG L H + Q ++E L LR
Sbjct: 367 ELAAAPPLATGDLALDGRAVMSLLGEGPGPHVGEALHHLLDRVLEDPAQNTREALAAELR 426
Query: 410 KLIA 413
+ A
Sbjct: 427 RWWA 430
>gi|297193312|ref|ZP_06910710.1| RNA nucleotidyltransferase [Streptomyces pristinaespiralis ATCC
25486]
gi|197718371|gb|EDY62279.1| RNA nucleotidyltransferase [Streptomyces pristinaespiralis ATCC
25486]
Length = 488
Score = 170 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 79/461 (17%), Positives = 159/461 (34%), Gaps = 61/461 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ +VGG+VRD+L+ D+D T P+ V++I V
Sbjct: 27 SPVADDLARRFQDAGFGLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVW 86
Query: 72 PTSISYGTIKIICRK--------KYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDF 122
I++GT+ ++TT RS+ R +V + + D +RRDF
Sbjct: 87 DVGIAFGTVGAHKAGRVGDAVQSFQIEVTTYRSEAYDRTSRKPEVSYGDSIEQDLVRRDF 146
Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T+NA+ + ID GL+DL + ++ G +D LR++R RF A
Sbjct: 147 TVNAMAVALPAKEFIDPHDGLSDLAAKVLRTPGTPEESFSDDPLRMMRAARFAAQLDF-E 205
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ + + A + ++I+S+ER+ E NKLL + +P + + + G+ + ++ +
Sbjct: 206 VAPEVVAAMKAMAERIEIVSAERVRDEFNKLLLSAHPRKGLSLLVDTGLAAHVLPELPAL 265
Query: 242 SLD-------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK------------ 276
L+ L+ + +A + E D +LR L+ K
Sbjct: 266 RLESDEHHRHKDVYEHSLTVLDQAIALEEDGPDLVLRLAALLHDIGKPRTRRFEQDGRVS 325
Query: 277 ----------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDK 323
E+ + + E Y+
Sbjct: 326 FHHHEVVGAKMTKKRMTALKYSNEMVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAG 385
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVVK- 372
++ +L + + + + L G+++ +
Sbjct: 386 PLLDRLHKLTRSDCTTRNKRKAGALSRAYDGLEDRIAELQEQEELDAIRPDLNGNEIQEI 445
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
GI PG +G + + + + ++ L++ A
Sbjct: 446 LGIGPGPMIGKAYAFLLELRLENG-PMERDAAVSALKEWWA 485
>gi|310817143|ref|YP_003965107.1| polyA polymerase family protein [Ketogulonicigenium vulgare Y25]
gi|308755878|gb|ADO43807.1| polyA polymerase family protein [Ketogulonicigenium vulgare Y25]
Length = 373
Score = 170 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 127/405 (31%), Positives = 185/405 (45%), Gaps = 37/405 (9%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ W H S L +I + L ++ VGG VR++++ D+D+AT P +V
Sbjct: 2 KLDADWLHHSALQDICATLTGAGHQAWFVGGCVRNAVIGGGATDVDMATDATPAQVKAAL 61
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
S + + T I +GTI ++ + +ITT R D+ TDGR+A+VVF D D+ RRDFT
Sbjct: 62 S--GLRTVDTGIDHGTITVLTAQGPVEITTFRRDVETDGRHARVVFGTDLAEDAARRDFT 119
Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-I 182
+NALYA G + D VGGL D + T++FIGDA RI EDYLRILRFFRF A YGE I
Sbjct: 120 MNALYAAPDGTLADPVGGLPDALSGTVRFIGDAPTRIREDYLRILRFFRFHAWYGEAGAI 179
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D+DGL A + G++ LS ER+ +E+ KLL A +P AI M G+ I
Sbjct: 180 DADGLAACAELADGIEGLSRERVGAEMRKLLSAPDPAPAIAAMAQSGVLLRILPGA---G 236
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
L L ++ E + + R + A+ L L
Sbjct: 237 LGTLPALVHIEGLMALPPAPMRRLAAIGG-------EDAARLLRLSNAEARVLAQM---- 285
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + + Y YG + + + Y +L+ +
Sbjct: 286 -----QNPQPLHEAAYRYGADIALDM----AVITYASLSQMPPADLRARAGWAAAQ---K 333
Query: 363 FPLTGDDVVKYGIPP--GKKVGNILVHCKQEWINSSFQLSQEDLH 405
FPL D+ P G +G L + WI S F L +++L
Sbjct: 334 FPLKSSDL------PLSGPALGQALRAAEARWIASDFSLGKDELK 372
>gi|257462979|ref|ZP_05627383.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Fusobacterium sp. D12]
gi|317060596|ref|ZP_07925081.1| poly(a) polymerase [Fusobacterium sp. D12]
gi|313686272|gb|EFS23107.1| poly(a) polymerase [Fusobacterium sp. D12]
Length = 446
Score = 170 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 92/437 (21%), Positives = 166/437 (37%), Gaps = 44/437 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ IL L + + +VGG VRD L+ D D T + + + RIF K
Sbjct: 10 KGVSYILEQLERKG-EGYLVGGCVRDILLGKEPHDYDFCTNLSYEELKRIFKPYPCK--E 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131
T S+G ++ + F+I RSD +DGR + + F + + D RRDFTINA+ +
Sbjct: 67 TGKSFGVFRVQIEGEEFEIARFRSDEGSDGRRPQKIKFVKTIEEDLARRDFTINAMAYHR 126
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+D GG DL+ + I+ +G+ RI ED LRI+R FRF + G ++ +
Sbjct: 127 SKGFLDLYGGEEDLKKKRIRLVGNPIERIREDGLRIMRAFRFVSQLGFHLEENTKRAIAQ 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + K ++ RI E NKL+ + M G + I ++ +
Sbjct: 187 EKQML-KKIAKSRITEEWNKLVVGDFVAKTLEMMKETGALEIILPSLKLCYNFNQNTPYH 245
Query: 252 AEQVFEW--------KIDSLLRFIVLISWQDKKSILSMAKK------------------- 284
++E D +LR + K ++ +K
Sbjct: 246 CYDLWEHTLHVVNLVPNDLVLRLAAIFHDIGKPFTKTVDEKTGYYHFYGHEKKGAEIIGR 305
Query: 285 -----FSLPREIRYFLISFFNCNFNQKTLS-IPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
IR + + + I+K+ +G++ L++ +A +
Sbjct: 306 ILQGELEEANTIRKEVEFLIANHMLLHQNTDEKSIRKMISRFGEERSRKLLQLSVADNLA 365
Query: 339 NLTHQDTCFILQ--VLSDIIHWKKP---LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
+ + L+ I K P + G D+++ G GK + I + ++ +
Sbjct: 366 KDLKKISEKNLEELFYKIIEEEKIPGLSDLAINGFDLMELGYV-GKNIQEIKEYLLEQVV 424
Query: 394 NSSFQLSQEDLHHLLRK 410
+ L +K
Sbjct: 425 EGKIENEHTVLWEAAKK 441
>gi|288799639|ref|ZP_06405098.1| polyA polymerase family protein [Prevotella sp. oral taxon 299 str.
F0039]
gi|288332887|gb|EFC71366.1| polyA polymerase family protein [Prevotella sp. oral taxon 299 str.
F0039]
Length = 475
Score = 170 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 79/462 (17%), Positives = 161/462 (34%), Gaps = 64/462 (13%)
Query: 10 FHDSDLINIL---------SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
+SDL IL + + +VGG VRD + +DID+ V
Sbjct: 4 LSNSDLAKILNQDIFHLISKAADALSLECYVVGGYVRDLFLERPSKDIDVVVVGSGIAVA 63
Query: 61 RIFSKTRYK--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
T + + ++GT ++ + + R + +V + D
Sbjct: 64 EKLKATLGRGAHLSVFRNFGTAQVKYKGIEVEFVGARRESYQRNSRKPIVEDGTLEDDQN 123
Query: 119 RRDFTINALYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
RRDFTINAL +++D G+ DL + I+ + + +D LR+LR RF
Sbjct: 124 RRDFTINALAVCLNSARFGELVDPFYGIEDLEDGIIRTPLEPNITFSDDPLRMLRCIRFA 183
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
I+ + A I+ + +KI+S ERI E+NK++ K P + +Y G+ + I
Sbjct: 184 TQLNFF-IEDETFDALIENAERIKIISGERISDELNKIMLCKTPSKGFIDLYRCGLLQII 242
Query: 235 FLDVQEISL-----------DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM-- 281
++ + + + + + + + + LR+ L+ K
Sbjct: 243 LPELCALDIVETRNGRAHKNNFYHTLEVLDNIAKHTDNLWLRWGALLHDIGKPKSKRWEN 302
Query: 282 --AKKFSLPREI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
F I ++ S + + ++ +
Sbjct: 303 IAGWTFHNHNFIGAKMVPQMFRRLKLPLDAKMKYVQSMVDLHMRPIVIADDVVTDSAVRR 362
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH-------------WKKPLFPLTG 367
+ + L ++T +++ + L + + + G
Sbjct: 363 LINDAGDNIDDLMTLCEADITTKNSMRKQRFLDNFRIVREKIEDLKERDYKRALQPVIDG 422
Query: 368 DDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+++++ +P G VG + K +++ +E L LL
Sbjct: 423 NEIMEMFNLPQGPAVGTLKQTLKNAVLDNVVPNEREALMELL 464
>gi|313159501|gb|EFR58864.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Alistipes sp. HGB5]
Length = 469
Score = 170 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 79/458 (17%), Positives = 160/458 (34%), Gaps = 53/458 (11%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I L + ++ +VGG VRD + DID+ + + +
Sbjct: 3 LTNPIFRRISRLAEEQGVRAFVVGGYVRDHFLRRPSTDIDVVVVGSGIALAEALGRELHA 62
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ ++GT + + + R + T V + D RRDFTINA+
Sbjct: 63 KVSVFKTFGTAMLRHKGVEVEFVGARRESYTQDSRKPQVEAGTLEDDQRRRDFTINAMAW 122
Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
G+++D G++DL I+ D +D LR++R RF + G I+ +
Sbjct: 123 SLNAGSFGELVDPFDGMDDLEECVIRTPCDPDVTFSDDPLRMMRAVRFASQLGF-TIEGE 181
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---- 241
A + ++I+S ERI +E+NK++ + P + G+ + IF ++ +
Sbjct: 182 TFDAIRRNAHRIRIVSRERIAAELNKIVLSPVPSMGFELLELTGLLELIFPEMHNLKGVE 241
Query: 242 -------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP------ 288
+ + + + V D LR+ ++ K + K
Sbjct: 242 KRGAHAHKDNFIHTLKVLDNVARRSGDLWLRWAAVLHDIAKPLTKAYDPKVGWTFHGHEV 301
Query: 289 -----------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
E F+ + LS + ++
Sbjct: 302 LGSKMVPAIFRQLKLPLNEHMKFVQKLVFLHLRPIILSEDLVTDSAVRRLLFEAGDDVEQ 361
Query: 332 FLALHYNNLTHQDTCFILQVLSDII-------------HWKKPLFPLTGDDVVK-YGIPP 377
+ L ++T + + L++ + P+TG+ +++ YGI P
Sbjct: 362 LMILCEADITSGIDAKVKRYLANFELVRRKMKDLEERDRIRNFQPPITGEIIMQTYGIGP 421
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ +G+I K ++ + + L+ +L A
Sbjct: 422 CRAIGDIKEVIKNAILDGEIPNDYDAAYALMERLAAEK 459
>gi|257466072|ref|ZP_05630383.1| Poly(A) polymerase [Fusobacterium gonidiaformans ATCC 25563]
gi|315917228|ref|ZP_07913468.1| poly(a) polymerase [Fusobacterium gonidiaformans ATCC 25563]
gi|313691103|gb|EFS27938.1| poly(a) polymerase [Fusobacterium gonidiaformans ATCC 25563]
Length = 446
Score = 170 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 97/444 (21%), Positives = 177/444 (39%), Gaps = 44/444 (9%)
Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66
++ ++ IL L K + +VGG+VRD L+ V D D T + + + +IFSK
Sbjct: 4 EEFVFPEKVLYILEELEKYG-EGYLVGGSVRDILLGREVHDFDFCTNLSYETLKQIFSK- 61
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV-VFTRDWKADSLRRDFTIN 125
Y I T ++G +++ + F+I + RS+ +DGR + +F + + D RRDF+IN
Sbjct: 62 -YFCIETGKAFGVLRLRIDGEEFEIASFRSEKGSDGRRPEEVIFVKRIEEDLARRDFSIN 120
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
A+ +Q+ ++DY DL N+ I+FIG+ RI ED LRI+R FRF + G +
Sbjct: 121 AMAYNQEKGLLDYYDAQKDLENKVIRFIGNPRERIQEDGLRIMRAFRFMSQLGFSLESNT 180
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ ++ RI E NKL+ + + M G+ + I ++ +
Sbjct: 181 KKAIMEEKGMLG-KIAKSRITEEWNKLILGDFVVETLEEMKKTGVLELILPSLKSLYHFN 239
Query: 246 LSQVIEAEQVFEWKI--------DSLLRFIVLISWQDKKSILSMAKK------------- 284
+ + ++E + D LR + K ++ +K
Sbjct: 240 QNNPYHSYDLWEHTMQVVKSVPKDLDLRLAAIFHDIGKPLTKTIDEKTGYYHFYGHEKKG 299
Query: 285 -----------FSLPREIRYFLISFFNCNFNQK-TLSIPEIKKLFYLYGDKVMIAKLKIF 332
+ R + + S IKKL +G + +K+
Sbjct: 300 AERIRSILQEELEESNKTRKEVEFLIENHMILHRNSSEKGIKKLISHFGIERTEKLIKLS 359
Query: 333 LALHYNNLTHQDTCFILQ--VLSDIIHWKKP---LFPLTGDDVVKYGIPPGKKVGNILVH 387
+A + Q + + K P + G ++K G GK++ I +
Sbjct: 360 IADNLGKNLQQLRENNVADLFYKIVEKQKIPTLQELAIDGFALMKLGYQ-GKEIQKIKEY 418
Query: 388 CKQEWINSSFQLSQEDLHHLLRKL 411
E + + + L ++L
Sbjct: 419 LLNEILEGKIENKETALLSKAKEL 442
>gi|134103797|ref|YP_001109458.1| poly(A) polymerase [Saccharopolyspora erythraea NRRL 2338]
gi|291005745|ref|ZP_06563718.1| poly(A) polymerase [Saccharopolyspora erythraea NRRL 2338]
gi|133916420|emb|CAM06533.1| poly(A) polymerase [Saccharopolyspora erythraea NRRL 2338]
Length = 499
Score = 170 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 80/453 (17%), Positives = 160/453 (35%), Gaps = 57/453 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ + + +VGG+VRD+L+ D+D T P++V + + V
Sbjct: 33 NAPVAEELAERFAAAGHRLYLVGGSVRDALLGRLGTDLDFTTDARPEQVRVLLDEWAETV 92
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
T I +GT+ +ITT R+D R +V F + D LRRDFT+NA+
Sbjct: 93 WDTGIQFGTLGAYRHGTTVEITTFRADTYDRVTRNPEVAFGDTIEGDLLRRDFTVNAMAI 152
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ + +D GG+ DL R + +D LR+LR RF + G
Sbjct: 153 ELPKRAFVDLHGGMADLVARRLDTPATPQESFADDPLRMLRAARFVSQLGFTPAPRVVDA 212
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD---- 244
+ ++ ++ ER+ +E++KLL ++P + + G+ + + ++ + L+
Sbjct: 213 MR-EMAGEIRRITPERVQTELSKLLCGRHPREGVELLVETGLAEHVLPELPAMKLEIDEH 271
Query: 245 ------------QLSQVIEAEQVFEWK--IDSLLRFIVLISWQDKK-------------- 276
L Q I+ E+ + D +LR L+ K
Sbjct: 272 HQHKDVYRHSLVVLDQAIDLERAADPDGEPDLVLRLAALLHDIGKPATRRFEPGGGVSFH 331
Query: 277 --------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVM 325
+ +++ + + + Y+ +
Sbjct: 332 HHEVVGAKMTRKRLRALRYSKDVINDVSGLVYLHLRFHGYGEGQWTDSAVRRYVNDAGHL 391
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YG 374
+++L + + + + D+ + L G+++++ G
Sbjct: 392 LSRLHKLVRADCTTRNRRKAAALQRSYDDLEARIARIAEEEDLARVRPDLDGNEIMRLLG 451
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+ PG VG H K ++ E + L
Sbjct: 452 VDPGPVVGKAWKHLKDVRLDRGPMDHDEAVAEL 484
>gi|149179457|ref|ZP_01858009.1| metal dependent phosphohydrolase [Planctomyces maris DSM 8797]
gi|148841703|gb|EDL56114.1| metal dependent phosphohydrolase [Planctomyces maris DSM 8797]
Length = 422
Score = 170 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 90/416 (21%), Positives = 161/416 (38%), Gaps = 21/416 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ I+ L ++ GG VRD L+ +D D+AT LP+ V +F K + +
Sbjct: 9 AAVEIVRKLRDAGFQALWAGGCVRDLLLQKEPKDYDVATNALPEEVRTLFGKR--RTLAV 66
Query: 74 SISYGTIKIICR--KKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYA- 129
S+G I + +I T RS+ DGR + V + D+ RRDFTIN ++
Sbjct: 67 GASFGVIIVRGHQPDCDVEIATFRSEGPYLDGRRPEHVKFTTAEEDAQRRDFTINGMFYD 126
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ DYVGG DL I+ IG+ R+ ED LR+LR RF A ++ A
Sbjct: 127 PINDSLFDYVGGKADLNQHIIRAIGNPLERMQEDKLRLLRAIRFAA-TLHFQLEESTRQA 185
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----- 244
+ ++S ERI E+ K+L AI + G+ K++ ++ +
Sbjct: 186 VQTMADQINVVSPERIADELRKMLIHPARSQAIALVQETGLLKQVLPELAPLWESAGNRS 245
Query: 245 -QLSQVIEAEQVFEWKIDS-----LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
L + + V ++ LL + Q I + K+ +
Sbjct: 246 LWLQTLDRLKLVSTHSFETAFATLLLDLPASGADQRLDEIYEICKRLRFSNHSLNLVHWL 305
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + ++ +L L + ++ A + D + D
Sbjct: 306 VQQRHSLEHAPAMKLSRLKRLLAHEDCPQLFELIAADLSSRKQPLDDLEFCRQYRDHTPR 365
Query: 359 KK--PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ P ++G+D++ GI G + ++L + + E LL +++
Sbjct: 366 EVLNPPPLISGNDLIDLGIKSGPQFKHLLTQVQDAQLEELIHTQDEA-FALLSQIL 420
>gi|221632084|ref|YP_002521305.1| putative RNA nucleotidyltransferase [Thermomicrobium roseum DSM
5159]
gi|221155983|gb|ACM05110.1| putative RNA nucleotidyltransferase [Thermomicrobium roseum DSM
5159]
Length = 485
Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats.
Identities = 78/443 (17%), Positives = 148/443 (33%), Gaps = 46/443 (10%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSI 75
+ + +VGG VRD L+ V D+D AT+ P+ + + + I
Sbjct: 31 RLARSFAAAGHELYLVGGVVRDLLLGRPVTDLDYATSAHPEETRCLGEEAGAESIYTVGE 90
Query: 76 SYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQG 133
++GTI ++ +ITT R++ R V F D RRDFT+NA+ G
Sbjct: 91 AFGTIGLVFAGVTVEITTYRTEWYPTLDRRPAVRFGDSLLEDLARRDFTVNAMAVHAVTG 150
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
++ID GG DL R ++ +GD R ED LRILR RF A G + L A
Sbjct: 151 ELIDPYGGQLDLERRLLRAVGDPFERFREDPLRILRAARFAAQLGFEVEAQTRLAMQELA 210
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ----- 248
+ ++ +N+LL A P + M + + ++ ++ D +
Sbjct: 211 SELQRVSVERIALE-LNRLLVAPEPDRGLELMRQTRLLPVVLPELVPLAEDPGDRRHKDI 269
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQ-----------------------DKKSILSMAKKF 285
QV L + + + ++
Sbjct: 270 WRHTLQVVRQSPPRLAVRWAALLHDAAKPMTRTIDEQGEVHFFGHELKGAELARKVLRRL 329
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345
+ + + + + + + + + +
Sbjct: 330 RQEKALIERVAQLVELHLRPAAYDETWTDSAVRRLMVEAGDLLEDLLDLVAADVTSARAW 389
Query: 346 CFI------------LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEW 392
++ L + + PL G +++ +G+PPG+ + + + +
Sbjct: 390 RRREARARIERLRAHIRRLEEEAALAQIKSPLDGHELMAIFGLPPGRWIAEVKNYLRDLV 449
Query: 393 INSSF-QLSQEDLHHLLRKLIAS 414
I +E L + +A
Sbjct: 450 IEGQLAPGDKETARVLAERWVAE 472
>gi|239930192|ref|ZP_04687145.1| RNA nucleotidyltransferase [Streptomyces ghanaensis ATCC 14672]
gi|291438534|ref|ZP_06577924.1| RNA nucleotidyltransferase [Streptomyces ghanaensis ATCC 14672]
gi|291341429|gb|EFE68385.1| RNA nucleotidyltransferase [Streptomyces ghanaensis ATCC 14672]
Length = 475
Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats.
Identities = 82/464 (17%), Positives = 158/464 (34%), Gaps = 61/464 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +VGG+VRD+L+ D+D T P V++I V
Sbjct: 13 APVADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPQDVLKIVRPWADAVW 72
Query: 72 PTSISYGTIKIICR--------KKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDF 122
I++GT+ ++TT RS+ R +V + + D RRDF
Sbjct: 73 EVGIAFGTVGAQKEARVGDADRSFQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLARRDF 132
Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T+NA+ + + +D GGL+DL R ++ G +D LR+LR RF A +
Sbjct: 133 TVNAMAVALPEKRFVDPYGGLDDLATRVLRTPGTPEESFSDDPLRMLRAARFAAQLDFEV 192
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
A + +I+S+ER+ E+NKL+ + +P + + G+ + + ++ +
Sbjct: 193 APEVVAAMKEMAGRL-EIVSAERVRDELNKLILSSHPRKGLTLLTETGLAEYVLPELPAL 251
Query: 242 SLDQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKK------------ 276
L++ L + +A + + D LR L+ K
Sbjct: 252 RLERDEHHRHKDVYDHTLIVLEQAMALEDEGPDLTLRLAALLHDIGKPRTRRFEKDGRVS 311
Query: 277 ----------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDK 323
E+ + + E Y+
Sbjct: 312 FHHHEVVGAKMTKKRMTALKYSNELVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAG 371
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVVK- 372
++ +L + + + + L G+ +++
Sbjct: 372 PLLDRLHKLTRSDCTTRNRRKAAALSRAYDGLEERIAQLQEQEELDAIRPDLDGNQIMEI 431
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
GI PG VG H + + + + + L++ A Q
Sbjct: 432 LGIKPGPVVGQAYQHMLELRLENG-PMEHDAAVKALKEWWAERQ 474
>gi|160915815|ref|ZP_02078023.1| hypothetical protein EUBDOL_01831 [Eubacterium dolichum DSM 3991]
gi|158432291|gb|EDP10580.1| hypothetical protein EUBDOL_01831 [Eubacterium dolichum DSM 3991]
Length = 447
Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats.
Identities = 94/444 (21%), Positives = 175/444 (39%), Gaps = 48/444 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+++I ++ ++ +VGG VRD++ + D D+ T LP + +F + ++PT
Sbjct: 7 ILDIFAIYEANGYEAFVVGGCVRDAICKRNCHDYDVITNALPQETIALFQQIGLHILPTG 66
Query: 75 ISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
++GT+ +I ++ + +ITT R D I R A + FT+ D RRDFTINA+
Sbjct: 67 FAHGTLTLIYQEHFIEITTYRKEDDYIDHRRPANISFTKSIYEDLKRRDFTINAIAYHPV 126
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ID G+ D+ RTI+ +GD + R+ ED LRILR RF A I+ A +
Sbjct: 127 HGLIDPFCGIKDIHRRTIRCVGDPNKRMEEDALRILRALRFSAQLSF-TIEEKTWQAILT 185
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ +S ERI +E N+ L + P NA+ + + + I ++Q I A
Sbjct: 186 HAMDIDYVSKERIQAEFNQYLCSDKP-NALHFLRAANVLELILPEMQRIYDAPQPTPWHA 244
Query: 253 EQVFEWKIDSLLR-------------------------------FIVLISWQDKKSILSM 281
+F +L + K+
Sbjct: 245 YDIFTHTDIALNHSKGYNLEKKLAIVFHDLGKPLCESFDEKGIVHYHGHAEISKEIAKQR 304
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD--KVMIAKLKIFLALHYNN 339
K+ ++ + + +++ + ++ + L I LA ++
Sbjct: 305 LKQLHYSNTAIKYITTLIAFHDYYVCPKRKVLRRFLSKLDNDIELALDILDIQLADNHAK 364
Query: 340 LTHQDTCFILQVL----------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
I +L + ++ + G D++ G G + L
Sbjct: 365 HPKLQKELIENILASKALLLQMQKEQDMIQRKDLAVNGHDIIALGYQ-GADIKKALEMLY 423
Query: 390 QEWINSSFQLSQEDLHHLLRKLIA 413
Q I+ Q ++++L LL+ +
Sbjct: 424 QTVIDDPSQNTKDNLLSLLKTFKS 447
>gi|169827541|ref|YP_001697699.1| CCA-adding enzyme [Lysinibacillus sphaericus C3-41]
gi|168992029|gb|ACA39569.1| CCA-adding enzyme [Lysinibacillus sphaericus C3-41]
Length = 392
Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats.
Identities = 90/398 (22%), Positives = 168/398 (42%), Gaps = 25/398 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+++ L + ++ IVGGAVRD+L+N D+D+AT LP+ V +F + +
Sbjct: 10 AYSVIEQLEQAGFEAVIVGGAVRDALLNRPAHDVDVATNALPEEVKSVFQ----RTVDIG 65
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ +I ++TT R + R KV F R + D RRDFT+NA+
Sbjct: 66 IQHGTVLVIVPAGPVEVTTYRTDGEYTDHRRPDKVQFVRSLQDDLQRRDFTMNAIAMRHD 125
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G +DY GG D+ R I+ +GDA R ED LR+LR RF A I D + A
Sbjct: 126 GTFVDYYGGRQDIELRVIRAVGDADKRFAEDALRMLRAIRFSAQLDF-TIAKDTMTAIQN 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ ++ ERI +E++KL + + + + G+ + + Q
Sbjct: 185 RAPDIAFIAKERIKAELDKLWLGTSVFSGLQKLEESGLAAYLHGNFQAH----------- 233
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ ++++ + + + + + + L + F+ + +
Sbjct: 234 -RWYDFRTEDKHVGWAYFALLQGANWREILRDYRLSNKEMAFVKAVLTAYEALNS---GW 289
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
++ Y ++ + A + L + +LQ + +K + G D++K
Sbjct: 290 TNIHYFTYKEQELEAAIYFAKLLQLDVCLPSQPIRVLQ--DQLPIQQKQEVVVNGADLLK 347
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ G G V +L + I++ + QE + + L
Sbjct: 348 WSGKKGGPWVKEVLGDILEAIIHNELENDQERIKNWLD 385
>gi|331700374|ref|YP_004336613.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pseudonocardia dioxanivorans CB1190]
gi|326955063|gb|AEA28760.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pseudonocardia dioxanivorans CB1190]
Length = 545
Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats.
Identities = 85/458 (18%), Positives = 153/458 (33%), Gaps = 60/458 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL---SVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +VGG+VRD+L+ + D+D T P+R+ + + V
Sbjct: 87 ADELGERFRAAGHVLYLVGGSVRDALLGRGAAAGGDLDFTTDARPERIQELLAGWADTVW 146
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GTI +ITT R+D GR V F + D +RRDFT+NA+ +
Sbjct: 147 DTGIDFGTIGARRGDHVLEITTFRADAYDRVGRNPIVRFGDSIEGDLVRRDFTVNAMAVE 206
Query: 131 QQ-----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ +D GGL L T+ +D LR+LR RF + G
Sbjct: 207 VHAPDGQRRFVDPHGGLAALAAGTLDTPATPQESFADDPLRMLRGARFVSQLGFAPAPRV 266
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
+ A + +I +KL+ +P AI M + G+ + + +V
Sbjct: 267 VEAMTAMAGELARITKERVQAE-FSKLILGAHPRRAIELMVDTGLAELVVPEVPAMRLAI 325
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK---------------- 276
+++ L + +A + + D +LR L+ K
Sbjct: 326 DEHMQHKDVYTHSLVVLEQAIEREQDGPDLVLRLAALLHDVGKPDTRRKEPDGRVSFHHH 385
Query: 277 ------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIA 327
+ ++ P+ + + + E Y+ ++
Sbjct: 386 EVVGAKMVRRRLRELRYPKVVVDEVAQLVFLHLRFHGYGNGEWTDSAVRRYVTDAGPLLD 445
Query: 328 KLKIFLALHYNNLTHQDTCFILQ----------VLSDIIHWKKPLFPLTGDDVVK-YGIP 376
+L + + + + L + L G+ +++ G+
Sbjct: 446 RLHKLVRSDCTTRNRRRAAALQRSYDSLEERIAALREQEELDSIRPDLDGNAIMQLLGLR 505
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
PG VG H + LS E+ LR A
Sbjct: 506 PGPLVGKAYKHLLALRMERG-PLSHEEAEAELRAWAAE 542
>gi|323697882|ref|ZP_08109794.1| Polynucleotide adenylyltransferase region [Desulfovibrio sp. ND132]
gi|323457814|gb|EGB13679.1| Polynucleotide adenylyltransferase region [Desulfovibrio
desulfuricans ND132]
Length = 895
Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats.
Identities = 73/420 (17%), Positives = 127/420 (30%), Gaps = 31/420 (7%)
Query: 16 INILSLLNKGE-------DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+L LL + + VGG VRD L+ D+D+ R F+
Sbjct: 469 QRMLDLLKEAGELGTDMGWEVYAVGGFVRDILLGRPNLDLDLVVEGDGIAFARRFAAKLG 528
Query: 69 KVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + T +I + D+ T R + V K D RRDFT+NAL
Sbjct: 529 GRVKAHSKFKTAVVILDDGQRVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTVNAL 588
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ +ED RILR RF + +
Sbjct: 589 ALRINPGRYGQLVDFFGAERDIRNKTIRVLHSLSFVEDPTRILRAIRFERRFDFQIGGQT 648
Query: 186 GLVASIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-- 242
+ + K LS R+ E+ ++ ++PL ++ M GI + I +
Sbjct: 649 MRLIKNALSLKLFSKLSGTRVMHELQLIMNEEDPLACLLRMQELGIMEAIHPLLSLDKER 708
Query: 243 ---LDQLSQVIEAEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
L +L +V ++ + L + + + I + + R
Sbjct: 709 VQILTELVKVHNWYKLLYLEPPVVPWKLYLLGMTMGIKRDQIDQVTGRLHFTRREERDFF 768
Query: 297 SFFNC-----NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ Y + + + +A ++ L
Sbjct: 769 QLRDQIGEALMKLMGWKEGRSRLSRLYKILHPLPVEGILFLMARSRKEYIRRNISQYLAR 828
Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
L + + G D+ GI PG IL I+ + E L +L +KL
Sbjct: 829 LQYVEIE------VNGKDLKNIGIEPGPIYAIILDKLMTAKIDGRAETRHEQL-NLAKKL 881
>gi|119964423|ref|YP_949860.1| RNA nucleotidyltransferase [Arthrobacter aurescens TC1]
gi|119951282|gb|ABM10193.1| putative RNA nucleotidyltransferase [Arthrobacter aurescens TC1]
Length = 488
Score = 169 bits (427), Expect = 8e-40, Method: Composition-based stats.
Identities = 87/457 (19%), Positives = 152/457 (33%), Gaps = 59/457 (12%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ D ++++ + +VGG VRD + + D+D T PD+ + + K
Sbjct: 12 FTIDPVVLDLGQRFVDAGFELSLVGGPVRDLFLGRTSPDLDFTTDATPDQTISVIKKWAD 71
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
++GTI + +ITT R D R V F D LRRDFTINA+
Sbjct: 72 NFWEIGRAFGTIGMKKSGFQIEITTYRAEAYDPDSRKPVVAFGSSLTDDLLRRDFTINAM 131
Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+++D GG+ DL + G +D LR++R RF + G D
Sbjct: 132 ALRLPSLELVDPFGGVRDLHASELATPGAPEASFSDDPLRMMRAARFASQLGVSVHDDVR 191
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ- 245
L S + +KI+S+ER+ E+ KL+ +P I + + G+ + + +V + L+
Sbjct: 192 LAMS-QMADRIKIISAERVREELVKLINGTHPRVGIDLLVDTGLAEFVLPEVSALRLEAD 250
Query: 246 ---------LSQVIEAEQVFEWK---------IDSLLRFIVLISWQDKKSILSM------ 281
+ EQ + D +LRF L+ K +
Sbjct: 251 EHHRHKDVYQHSLQVLEQAAALETGPDGPVPGPDFVLRFAALMHDVGKPATRRFEPGGAV 310
Query: 282 ----------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGD 322
K + + + Y+
Sbjct: 311 SFRHHDVVGAKLTAKRMKALRFDNDSIKAVSRLVELHMRFYGYGDAGWSDSAVRRYVTDA 370
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK 372
++ +L + + D+ L G +++
Sbjct: 371 GPLLERLHRLTRSDVTTRNQRKADRLSFAYDDLEQRISALMEQESLAAVRPDLDGAQIMR 430
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G+ PG VG +E + LS E+ L
Sbjct: 431 LLGLKPGPVVGRAYKFLLEERMEHG-PLSPEEAEQKL 466
>gi|119871509|ref|YP_941461.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS]
gi|119697598|gb|ABL94671.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS]
Length = 489
Score = 169 bits (427), Expect = 9e-40, Method: Composition-based stats.
Identities = 83/452 (18%), Positives = 163/452 (36%), Gaps = 58/452 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L +I ++ + +VGG+VRD+L+ D+D T P+++ + T
Sbjct: 29 LRDIGAVFAEAGHTLYLVGGSVRDALLGRLGTDLDFTTDARPEQMQAFLRPWADALWDTG 88
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ- 132
I +GT+ + +ITT R+D R V + + D +RRDFT+NA+
Sbjct: 89 IEFGTVGVGKAGHRMEITTFRADSYDQVSRNPAVRYGDRLEDDLVRRDFTVNAMAVAITA 148
Query: 133 ---GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
G+ D +GGL LR + + +D LR+LR RF + G + A
Sbjct: 149 AGPGEFHDPLGGLAALRAKVLDTPSAPEVSFGDDPLRMLRAARFASQLGF-GVAPRVRTA 207
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLS 247
+ L ++ ER+ +E++KLL +P+ I M G+ + +V +++D+
Sbjct: 208 MTEMAPQLSRITVERVAAELDKLLLGADPVTGIDLMVQTGLGDVVLPEVGGMRLAIDEHH 267
Query: 248 QVIEAEQV----------FEWKIDSLLRFIVLISWQDKKSILSM---------------- 281
Q + E D +LR+ L+ K +
Sbjct: 268 QHKDVYWHSLTVLRQAIDLEDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHHEVVGA 327
Query: 282 ------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF-------YLYGDKVMIAK 328
+ +++ + + + + Y+ ++ +
Sbjct: 328 KMARKRMRALKYSKQMVDDVSQLVFLHLRFHGYGDAKGPGKWTDSAVRRYVTDAGPLLDR 387
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + + D+ ++ L G+++++ IP
Sbjct: 388 LHKLVRADCTTRNKRRAARLQANYDDLERRIAELAAKEDLQRVRPDLDGNEIMRLLDIPA 447
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G +VG H K+ + E + LL+
Sbjct: 448 GPQVGEAWRHLKELRLERGPLSHDEAVDELLK 479
>gi|257452134|ref|ZP_05617433.1| Poly(A) polymerase [Fusobacterium sp. 3_1_5R]
Length = 444
Score = 169 bits (427), Expect = 9e-40, Method: Composition-based stats.
Identities = 97/436 (22%), Positives = 177/436 (40%), Gaps = 36/436 (8%)
Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66
++ ++ IL L K + +VGG+VRD L+ V D D T + + + +IFSK
Sbjct: 10 EEFVFPEKVLYILEELEKYG-EGYLVGGSVRDILLGREVHDFDFCTNLSYETLKQIFSK- 67
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV-VFTRDWKADSLRRDFTIN 125
Y I T ++G +++ + F+I + RS+ +DGR + +F + + D RRDF+IN
Sbjct: 68 -YFCIETGKAFGVLRLRIDGEEFEIASFRSEKGSDGRRPEEVIFVKRIEEDLARRDFSIN 126
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
A+ +Q+ ++DY DL N+ I+FIG+ RI ED LRI+R FRF + G +
Sbjct: 127 AMAYNQEKGLLDYYDAQKDLENKVIRFIGNPRERIQEDGLRIMRAFRFMSQLGFSLESNT 186
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--EISL 243
+ + ++ RI E NKL+ + + M G+ + I ++ S
Sbjct: 187 KKAIMEEREMLG-KIAKSRITEEWNKLILGDFVVETLEEMKETGVLELILPSLKSLYHSY 245
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL---------------- 287
D ++ + +D L I + + +
Sbjct: 246 DLWEHTMQVVKSVPKDLDLRLAAIFHDIGKPLTKTIDEKTGYYHFYGHEKKGAERIRSIL 305
Query: 288 ------PREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ R + + Q+ S IKKL +G + +K+ +A +
Sbjct: 306 QEELEESNKTRKEVEFLIENHMILQRNSSEKGIKKLISHFGIERTEKLIKLSIADNLGKN 365
Query: 341 THQDTCFILQ--VLSDIIHWKKP---LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
Q + + K P + G ++K G GK++ I + +E +
Sbjct: 366 LQQLRENNVADLFYKIVEKQKIPTLQELAIDGFALMKLGYQ-GKEIQKIKEYLLEEVLEG 424
Query: 396 SFQLSQEDLHHLLRKL 411
+ + L ++L
Sbjct: 425 KIENKETALLSKAKEL 440
>gi|218289185|ref|ZP_03493421.1| Polynucleotide adenylyltransferase region [Alicyclobacillus
acidocaldarius LAA1]
gi|218240768|gb|EED07947.1| Polynucleotide adenylyltransferase region [Alicyclobacillus
acidocaldarius LAA1]
Length = 407
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 76/412 (18%), Positives = 151/412 (36%), Gaps = 19/412 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ ++ +L + +VGGAVRD L+ L+ D+D+AT+ P+ V +F+ +
Sbjct: 2 LIPAPAREVMEVLRSAGYAAYLVGGAVRDLLLGLTPSDLDVATSARPEDVKSLFA----R 57
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
I T I +GT+ + + ++TT R R V F D +AD RRDFT+NA+
Sbjct: 58 TIDTGIRHGTVSVQSAGCWIEVTTFRAEGPYGDGRRPDFVRFVDDVEADLARRDFTMNAM 117
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D G++ID G DL R ++ +GD R ED LR+LR RF + +
Sbjct: 118 ALDLDGRLIDPFDGRGDLSRRLLRAVGDPVARFREDGLRLLRAVRFAVQFHLTCDPATEA 177
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ A I + + + + +++ + L+Q
Sbjct: 178 ALAETADAIRPIALERIGRELERLSHAPWHAH--LDWLASTPLWRRKGEPL--AWLEQGF 233
Query: 248 QVIEAEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ ++ F + + A+ + ++ +
Sbjct: 234 SWLASQGRFSLAPPAGWPSVALWFVGVDDGPLRARRFAEALAYGKDAALRIERAVQLGQA 293
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
++ Y G + L ++ + + + W++
Sbjct: 294 WARGMNAASPEMLYEAGRASAEMAAAMISFLSRGDVF--EMARWKRAIRAQPLWERSHLA 351
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
L D++ G+ GK++G + + + + L R+++A +
Sbjct: 352 LPAGDLLAMGLR-GKEIGECQKSLVRRILRGEIENQPDALR---REVMARRK 399
>gi|126438336|ref|YP_001074027.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS]
gi|126238136|gb|ABO01537.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS]
Length = 489
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 83/452 (18%), Positives = 163/452 (36%), Gaps = 58/452 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L +I ++ + +VGG+VRD+L+ D+D T P+++ + T
Sbjct: 29 LRDIGAVFAEAGHTLYLVGGSVRDALLGRLGTDLDFTTDARPEQMQAFLRPWADALWDTG 88
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ- 132
I +GT+ + +ITT R+D R V + + D +RRDFT+NA+
Sbjct: 89 IEFGTVGVGKAGHRMEITTFRADSYDQVSRNPAVRYGDRLEDDLVRRDFTVNAMAVAITA 148
Query: 133 ---GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
G+ D +GGL LR + + +D LR+LR RF + G + A
Sbjct: 149 AGPGEFHDPLGGLAALRAKVLDTPSAPEVSFGDDPLRMLRAARFASQLGF-GVAPRVRTA 207
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLS 247
+ L ++ ER+ +E++KLL +P+ I M G+ + +V +++D+
Sbjct: 208 MTEMAPQLARITVERVAAELDKLLLGADPVTGIDLMVQTGLGDVVLPEVGGMRLAIDEHH 267
Query: 248 QVIEAEQV----------FEWKIDSLLRFIVLISWQDKKSILSM---------------- 281
Q + E D +LR+ L+ K +
Sbjct: 268 QHKDVYWHSLTVLRQAIDLEDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHHEVVGA 327
Query: 282 ------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF-------YLYGDKVMIAK 328
+ +++ + + + + Y+ ++ +
Sbjct: 328 KMARKRMRALKYSKQMVDDVSQLVFLHLRFHGYGDAKGPGKWTDSAVRRYVTDAGPLLDR 387
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + + D+ ++ L G+++++ IP
Sbjct: 388 LHKLVRADCTTRNKRRAARLQANYDDLERRIAELAAKEDLQRVRPDLDGNEIMRLLDIPA 447
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G +VG H K+ + E + LL+
Sbjct: 448 GPQVGEAWRHLKELRLERGPLSHDEAVDELLK 479
>gi|317058679|ref|ZP_07923164.1| poly(a) polymerase [Fusobacterium sp. 3_1_5R]
gi|313684355|gb|EFS21190.1| poly(a) polymerase [Fusobacterium sp. 3_1_5R]
Length = 438
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 97/436 (22%), Positives = 177/436 (40%), Gaps = 36/436 (8%)
Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66
++ ++ IL L K + +VGG+VRD L+ V D D T + + + +IFSK
Sbjct: 4 EEFVFPEKVLYILEELEKYG-EGYLVGGSVRDILLGREVHDFDFCTNLSYETLKQIFSK- 61
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV-VFTRDWKADSLRRDFTIN 125
Y I T ++G +++ + F+I + RS+ +DGR + +F + + D RRDF+IN
Sbjct: 62 -YFCIETGKAFGVLRLRIDGEEFEIASFRSEKGSDGRRPEEVIFVKRIEEDLARRDFSIN 120
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
A+ +Q+ ++DY DL N+ I+FIG+ RI ED LRI+R FRF + G +
Sbjct: 121 AMAYNQEKGLLDYYDAQKDLENKVIRFIGNPRERIQEDGLRIMRAFRFMSQLGFSLESNT 180
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--EISL 243
+ + ++ RI E NKL+ + + M G+ + I ++ S
Sbjct: 181 KKAIMEEREMLG-KIAKSRITEEWNKLILGDFVVETLEEMKETGVLELILPSLKSLYHSY 239
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL---------------- 287
D ++ + +D L I + + +
Sbjct: 240 DLWEHTMQVVKSVPKDLDLRLAAIFHDIGKPLTKTIDEKTGYYHFYGHEKKGAERIRSIL 299
Query: 288 ------PREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ R + + Q+ S IKKL +G + +K+ +A +
Sbjct: 300 QEELEESNKTRKEVEFLIENHMILQRNSSEKGIKKLISHFGIERTEKLIKLSIADNLGKN 359
Query: 341 THQDTCFILQ--VLSDIIHWKKP---LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
Q + + K P + G ++K G GK++ I + +E +
Sbjct: 360 LQQLRENNVADLFYKIVEKQKIPTLQELAIDGFALMKLGYQ-GKEIQKIKEYLLEEVLEG 418
Query: 396 SFQLSQEDLHHLLRKL 411
+ + L ++L
Sbjct: 419 KIENKETALLSKAKEL 434
>gi|306817479|ref|ZP_07451223.1| tRNA adenylyltransferase [Mobiluncus mulieris ATCC 35239]
gi|304649703|gb|EFM46984.1| tRNA adenylyltransferase [Mobiluncus mulieris ATCC 35239]
Length = 486
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 87/460 (18%), Positives = 157/460 (34%), Gaps = 59/460 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + + + +VGG VRD+L+ + D+D+ T+ P+ + + V
Sbjct: 18 PLVAPLGDVFTGAGFEIALVGGPVRDALLGQAPHDLDLTTSARPEEIETVLRPWADAVWD 77
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130
++GTI F+ITT R D R V F + D RRDFT+NA+
Sbjct: 78 VGRNFGTIGARKGDAIFEITTYRCDEYQRDSRKPLVKFGDTLEGDLWRRDFTVNAMALRL 137
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D GG DL + ++ +D LRI+R RF A G +ID L A
Sbjct: 138 PEMTLVDPTGGERDLEQQMLRTPISPEESFNDDPLRIMRAARFAAQLGF-DIDYSVLTAM 196
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------ 238
++ L+I+S ERI +E ++LL + P + M + ++ ++
Sbjct: 197 QDMRERLQIVSRERIQAEFSRLLVSPWPRRGLELMVYTDVAAQVVPELMDLRDMQDEHKR 256
Query: 239 ----QEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM---------- 281
E SL L Q I E + + D +LR L+ K +
Sbjct: 257 HKDVWEHSLIVLEQAIAQETGPDGPVPEPDLVLRLAALLHDIGKPATRRFEGGGVVTFHQ 316
Query: 282 ------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
++ + + + Y+ ++
Sbjct: 317 HDVVGAKIARRRLRELKYDKATIRDVSRLIALHQRFHGYGEQPWTDSAVRRYVTDAGPLL 376
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK-YGI 375
+L + + D+ L G ++++ GI
Sbjct: 377 QRLHRLTRADCTTRNVRKAERLSAAYDDLEARIAALQAKEELDAVRPELDGSEIMEILGI 436
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
PG +VG + + + E +LR+
Sbjct: 437 SPGPQVGKAYKYLLAYRMENGLV-GHETAETVLREWWEKC 475
>gi|325681365|ref|ZP_08160891.1| HDIG domain protein [Ruminococcus albus 8]
gi|324106855|gb|EGC01145.1| HDIG domain protein [Ruminococcus albus 8]
Length = 444
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 97/438 (22%), Positives = 172/438 (39%), Gaps = 48/438 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L +L+K E ++ IVGG VRDSLM+ S D D+ T P ++RIF + I T
Sbjct: 9 VSAVLDVLSKNEYEAYIVGGCVRDSLMDKSPHDYDVCTNCTPSEMVRIF--NNFHTIETG 66
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ +GT+ ++ +ITT R + R V F + + D RRDFTINA+ +
Sbjct: 67 LKHGTLTVMSEHMPVEITTYRSDGEYTDHRRPDTVKFETELREDLRRRDFTINAMCFNPD 126
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D G DL R I+ +G A R ED LRI+R RF A +I+ + +A K
Sbjct: 127 EGIVDMFEGEKDLELRVIRCVGKAEERFEEDALRIMRALRFAAVLDF-SIEENTSLAMRK 185
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L +S+ERI++E+ KL+ K + + + I ++ + +
Sbjct: 186 KAHLLNAISAERIFTELKKLICGKAARRIL--LEYSDLIALIIPEIAPCIGCAQNNIHHC 243
Query: 253 EQVFEW--------KIDSLLRFIVLISWQDKKS----------------------ILSMA 282
V+E + + LR +L K +
Sbjct: 244 YDVYEHICRSVESIEPNDELRLTMLFHDIGKPQKKTTDEDGQDHFKLHQLASADIAEQVL 303
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
+ ++ + S + N+ +K+ Y A LK+ A +
Sbjct: 304 TRLKSSKKTLDMVTSLVREHDNRVPPKRRSLKRFIAKYDYDFFEAWLKVRRADTLAQSDY 363
Query: 343 QDTCFI----------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
+ ++ +D+ K + G DV+ G G ++ +L
Sbjct: 364 MRAEKLAELDELARLGEEIKADMCCLKVTDLAINGHDVMSMGYK-GAEIKTVLNFALDAV 422
Query: 393 INSSFQLSQEDLHHLLRK 410
I+ + + L +++
Sbjct: 423 IDEVSENEHDTLMDYVKE 440
>gi|153809425|ref|ZP_01962093.1| hypothetical protein BACCAC_03739 [Bacteroides caccae ATCC 43185]
gi|149128011|gb|EDM19233.1| hypothetical protein BACCAC_03739 [Bacteroides caccae ATCC 43185]
Length = 477
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 75/445 (16%), Positives = 162/445 (36%), Gaps = 55/445 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + + +VGG VRD + +DID+ + K + +
Sbjct: 20 QIAETADALGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133
++GT ++ + + R + +V + D RRDFTINAL
Sbjct: 80 KNFGTAQVKYKGTEVEFVGARKESYHRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKA 139
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GG+ D++ +TI+ D +D LR++R RF ID D +
Sbjct: 140 RFGELVDPFGGMEDMKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IDDDTFESL 198
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241
+ ++ + I+S ERI E+NK++ + P + + G+ IF ++ +
Sbjct: 199 CRNRERINIISRERIADELNKIILSPVPSKGFIDLERSGLLSLIFPELAALQGVETRNGR 258
Query: 242 --SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----AKKFSLPREI-RYF 294
+ + + + + + LR+ L+ K + F I
Sbjct: 259 SHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPKAGWTFHNHNFIGEKM 318
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AKLKIFLALH 336
+ + F + ++K+ L+ ++I + + L
Sbjct: 319 VPNIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMTLC 378
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++ + L++ + P++G+++++ +G+ P ++VG
Sbjct: 379 EADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRIRNFQPPVSGEEIMETFGLQPCREVG 438
Query: 383 NILVHCKQEWINSSFQLSQEDLHHL 407
+ K ++ E H
Sbjct: 439 ALKSAIKDAILDGVIPNEYEAAHAF 463
>gi|320532845|ref|ZP_08033618.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320134920|gb|EFW27095.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 495
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 81/461 (17%), Positives = 160/461 (34%), Gaps = 59/461 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L + + + +VGG VRD+ + ++ D+D+ T+ P++ +I +
Sbjct: 35 PALAALGYAFVRAGHEIALVGGPVRDAFLGVAPHDLDLTTSARPEQTEKILAAWGETTWD 94
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130
++GTI ++TT R++ G R +V + D RRDFT+NA+
Sbjct: 95 VGRAFGTIGARKGSTIVEVTTYRTEAYEVGSRKPQVTYGDTLTGDLTRRDFTVNAMALRL 154
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GGL DL ++ A +D LRI+R RF A G +++ D + A
Sbjct: 155 PDLELVDPCGGLADLAAGVLRTPVSAEQSFDDDPLRIMRAARFAAQLGF-DVEMDVMTAM 213
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------ 238
+ L+I+S+ER+ +E+ +LL + P + + + G+ + ++
Sbjct: 214 EEMASRLEIVSAERVRAELERLLISPWPRRGLELLVHAGVADVVLPELSALRETVDEHRR 273
Query: 239 ----QEISLDQLSQVIEAEQVFEWK---IDSLLRFIVLISWQDKKSILSMAKK------- 284
E +L L Q I+ E + D +LR ++ K +
Sbjct: 274 HKDVYEHTLTVLDQAIDLETGPDGPVPGPDLVLRLAAILHDIGKPATRRFLPDGTVTFHG 333
Query: 285 ---------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
++ + + Y ++
Sbjct: 334 HDHVGARMTAKRLRALRFDKQTVKDVSRLVELHLRFHGYVDAAWSDSAVRRYATDAGPLL 393
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVV-KYGI 375
+L + + + D+ L G ++ + G+
Sbjct: 394 ERLHRLTRADVTTRNRRKAAMLDRAYDDLEGRIESLRAAEELAAIRPDLDGGQIMAELGV 453
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
PG VG + + ++ LR A+ Q
Sbjct: 454 APGPVVGEAYRFLMDLRMEKG-SIGEDLARQALRSWWAARQ 493
>gi|86157905|ref|YP_464690.1| polynucleotide adenylyltransferase protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85774416|gb|ABC81253.1| Polynucleotide adenylyltransferase region [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 436
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 93/424 (21%), Positives = 164/424 (38%), Gaps = 30/424 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKV 70
++++L L +S +VGGAVRD L++ D D+AT P +VM +F +V
Sbjct: 14 EAILDVLRRLAAAGHRSWLVGGAVRDVLLHRPRAATDFDVATPATPQQVMALFR----RV 69
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALY 128
IPT I +GT+ ++ + ++TT R + T + +AD RRDFT+NA+
Sbjct: 70 IPTGIDHGTVTVLVGDEKVEVTTFRGEGDYVDGRRPATVTFLAELEADLARRDFTMNAMA 129
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D Q D G D+ R I+ +GD R ED LR +R RF A G + +
Sbjct: 130 YDPLQADFRDPFDGRVDMSRRRIRAVGDPAARFGEDGLRAMRAVRFAAQLGYRLDPATRA 189
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ +S ER+ E+++L+ A +P A++ + G+ + + + L
Sbjct: 190 AIPGALEVVR-KVSVERVAEELSRLVLASHPGPALLLLRRTGLLGVVVPALAALPLAAYR 248
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN------- 300
+ + LRF L+ + + LPR + + +
Sbjct: 249 HAVAV--AGHAPAEPALRFAALLHGVGPEEAARIVFGLRLPRRLSEEVGTLLRAYACPAA 306
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ + +I++ G + + + ++ A + +V
Sbjct: 307 RHPAALPDAPADIRRWLARTGPQRVPSVFELVSAELRTLPPARHAAAAEEVRRARAAIDA 366
Query: 361 P----------LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
L G V+ G PG VG L H + + + + L LR
Sbjct: 367 QLAAAPPLAAGDLALDGRAVMALLGQGPGPHVGEALHHLLDRVLEDPARNTPDALEAELR 426
Query: 410 KLIA 413
+ A
Sbjct: 427 RWWA 430
>gi|229084643|ref|ZP_04216911.1| CCA-adding enzyme [Bacillus cereus Rock3-44]
gi|228698666|gb|EEL51383.1| CCA-adding enzyme [Bacillus cereus Rock3-44]
Length = 384
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 86/391 (21%), Positives = 165/391 (42%), Gaps = 19/391 (4%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82
K ++ VGG+VRD ++N + DIDIAT+ LPD VM +F + +P + +GT+ +
Sbjct: 2 KKHGHEAYFVGGSVRDFIINRPIGDIDIATSALPDEVMHLFPRH----VPVGLEHGTVIV 57
Query: 83 ICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140
+ +++TT R+ D R + V F R + D RRDFT+NA+ +++G +ID
Sbjct: 58 VQEGVPYEVTTFRTESDYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMNEEGAIIDLFS 117
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200
G +R + I +G+A R ED LR++R RF + G +++ A K L+ +
Sbjct: 118 GQEAIRKQEIATVGNAADRFQEDALRMMRGIRFVSTLGF-SLEEKTKQAIEKYGHLLEHI 176
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ ERI E KLL + + + +F L ++S ++L + + +
Sbjct: 177 AIERITVEFEKLLTGTCCVKGLQELVETKLF--THLPYLQMSEERLLEAAQYNWGYFETD 234
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
F + ++ S+ KFS + + + + Y
Sbjct: 235 IEAWAFFLHCIGEEHPSVFLRQWKFSNKKIKDIVAVLLA----IRARKTKHWDAVFLYKT 290
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI---PP 377
+ +++ + + + + + ++G+D+ G P
Sbjct: 291 SLPTALMAERVYRVI-IKKYDMSFVNHVQSLFDSLSIHNRQEMKISGNDL--LGWTEKTP 347
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G V +L ++E + + +E + L
Sbjct: 348 GPWVSEVLQKIEEEILQERLENKKEKIREWL 378
>gi|320120312|gb|EFE28537.2| polyA polymerase [Filifactor alocis ATCC 35896]
Length = 444
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 96/440 (21%), Positives = 174/440 (39%), Gaps = 38/440 (8%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+++ I +L + + +VGG VRD +N D D+AT+ P ++ +
Sbjct: 4 LLSNEVKEIFQILQENGHQVYLVGGIVRDYFLNRENYDFDMATSATPTEMISLLKHFDLD 63
Query: 70 VIPTSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINA 126
T +GTI+I + K +ITT R + D + F D D RRDFT+NA
Sbjct: 64 A--TDSRFGTIRIKVAGKNDIEITTFRMEEYEDETRYPTKIDFVNDILIDLKRRDFTMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
L + + +ID GL D+R IK IG R LED LR+LR RF A ID D
Sbjct: 122 LAWNHK-GLIDCFHGLEDIRQSCIKTIGVPTKRFLEDPLRMLRAIRFSAQLDF-RIDEDS 179
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN--------------GGIFK 232
A ++ + LS E + +E K+L + NP AI +++
Sbjct: 180 YQAIVENAYLISRLSMESMRNEFVKILISNNPNYAIKCLFDSNIVEYIFFDSDIEWDRIY 239
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI-----------LSM 281
+ L L ++ E ++ + L + S + KK + +
Sbjct: 240 LQIRENNCKILFLLQRLSRLPCQLEVRLSAFLYHLFSCSLESKKEVAGKLISIEQLSEKL 299
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF-----YLYGDKVMIAKLKIFLALH 336
K+ + + + + ++ +S +M +++ F L
Sbjct: 300 LKRLKFSKRMISRVCNIIKYYPIEEYISAQTNINRLICAAGEDCWKNIMDIRIQYFSYLG 359
Query: 337 YNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
+ ++ I + + + K +TG+D++ G GK++G I+ I +
Sbjct: 360 VQDGCYEILDRIRKRMKENSIIHKKQLCVTGNDMISLGYK-GKEIGKIIDVLYDAVIEGN 418
Query: 397 FQLSQEDLHHLLRKLIASSQ 416
+ ++ L +++S +
Sbjct: 419 LKNTRVSLMKRAADMMSSIK 438
>gi|320170043|gb|EFW46942.1| tRNA nucleotidyl transferase [Capsaspora owczarzaki ATCC 30864]
Length = 516
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 122/447 (27%), Positives = 197/447 (44%), Gaps = 51/447 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
S L I ++ IVGGAVRD LMN+ +D+D+AT LPD + +F + +VI
Sbjct: 31 SSSLQEIHRVVTSHGYSIRIVGGAVRDLLMNIQPKDVDLATEALPDVLQHMFEEAGIRVI 90
Query: 72 PTSISYGTIKIICRK-----------------------------------KYFDITTLRS 96
PT + +GT+ ++ + +++TTLR
Sbjct: 91 PTGLKHGTVTVVFERPPSAAEQQQVVDNGTDPVAAAAATTAAAGNPRKLYDQYEVTTLRV 150
Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDA 156
D ITDGR+A+V FT DW D+ RRD N++ D G V DY GG+ DL+N I F+G A
Sbjct: 151 DKITDGRHAEVEFTSDWSLDAQRRDLRFNSMSIDFNGTVYDYFGGVQDLQNNHIAFVGTA 210
Query: 157 HHRILEDYLRILRFFRFFAHY------GEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210
RI EDYLRILRFFRF+ G +++ L + L +S+ERIW E +
Sbjct: 211 DLRIKEDYLRILRFFRFYGRMCDSLGQGNVSVEPGTLECIAENAPNLSGISAERIWLECS 270
Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLD--VQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
K+L+ ++ + + M G+ I L Q ++ ++ + + E + L+
Sbjct: 271 KILQQRSCPHTLEVMTRCGVANIIGLADLHQSVASSEIRLLQQLEMAVRHTTELALQLP- 329
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
D+ + + L ++ + + + ++ V
Sbjct: 330 PTDVADRWKEHAYIEMIRLSNIVKNEDSAAELALRWKLSNQQRDLLLFLVFNRHLVNEPD 389
Query: 329 LKIFLALHYNNLTHQDTCFILQVL-------SDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381
L + L + + L +I P+FPL+GD + K G+P GK +
Sbjct: 390 SAFARRLALDMLVDKVHPDWVAALVFPYVSPQEIYFANIPVFPLSGDVLAKSGVPKGKTM 449
Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLL 408
G +L +Q W N+ FQ+S+ +L
Sbjct: 450 GLVLASTRQLWKNAGFQVSENELVQHA 476
>gi|296167162|ref|ZP_06849569.1| polyA polymerase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295897484|gb|EFG77083.1| polyA polymerase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 478
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 85/453 (18%), Positives = 165/453 (36%), Gaps = 55/453 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
H L + S + + +VGG+VRD+++ D+D T P++V I + +
Sbjct: 19 HAPMLRELGSAFDAAGHELYLVGGSVRDAVLGRLSPDLDFTTDARPEQVQEILRRWADNL 78
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
T I +GT+ + +ITT R+D R +V F + D +RRDFT NA+
Sbjct: 79 WDTGIEFGTVGVGKGGNRLEITTFRADAYDRVSRKPEVQFGERLEDDLVRRDFTANAMAV 138
Query: 130 DQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ +D +GGL LR R + +D LR+LR RF A G +
Sbjct: 139 RITPEGPGEFLDPLGGLAALRQRVLDTPAAPSVSFGDDPLRMLRAARFVAQLGF-AVAPR 197
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
A + L +S+ER+ +E++KLL +P++ I + G+ + + +V
Sbjct: 198 VREAIEEMAPELARISAERVAAELDKLLLGDDPVSGIDLLVQTGMGEVVLPEVGGMQMAI 257
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------- 281
+++ L+ + +A + + D +LR+ L+ K +
Sbjct: 258 DEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEANGGVSFHHH 317
Query: 282 -----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIA 327
+ +++ + + + Y+ ++
Sbjct: 318 EVVGAKMTRKRLRALKYSKQMVDDVSQLVYLHLRFHGYGEGKWTDSAVRRYVTDAGPLLP 377
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIP 376
+L + + + + + L G+ ++K IP
Sbjct: 378 RLHKLVRADCTTRNKRRAARLQASYDRLEARIVELAAQEDLARVRPDLDGNAIMKLLDIP 437
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G +VG K+ + ++E LL
Sbjct: 438 AGPQVGEAWRFLKELRLERGPLTAEEATAELLD 470
>gi|218128766|ref|ZP_03457570.1| hypothetical protein BACEGG_00338 [Bacteroides eggerthii DSM 20697]
gi|217988994|gb|EEC55310.1| hypothetical protein BACEGG_00338 [Bacteroides eggerthii DSM 20697]
Length = 474
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 75/445 (16%), Positives = 157/445 (35%), Gaps = 55/445 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I ++ + +VGG VRD + +DID+ + +K + +
Sbjct: 20 RISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALAKRLGRGAHLSVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
++GT ++ + R + T VV + D RRDFTINAL +
Sbjct: 80 KNFGTAQLKYHGTEVEFVGARKESYTHDSRKPVVEDGSLEDDQNRRDFTINALAVCLNRQ 139
Query: 135 VI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
D GG+ D+R +TI+ D +D LR++R RF ID D +
Sbjct: 140 RYGELVDPFGGMEDMREKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IDDDTFESL 198
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----------Q 239
+ K+ + I+S ERI E+NK+L + P ++ + G+ + IF ++ +
Sbjct: 199 CRNKERISIISRERIADELNKILLSPVPSKGLIDLDRSGLLQLIFPELVALQGVETRNGR 258
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------ 281
+ + + + + + LR+ L+ K +
Sbjct: 259 AHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPRAGWTFHNHNFIGEKM 318
Query: 282 -----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
+ E ++ + + ++ + + + L
Sbjct: 319 IPEIFRRMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMTLC 378
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++ + L++ + P++G++++K + +PP ++VG
Sbjct: 379 EADITSKNMERKQRFLNNFQLVRQKLKDLEERDRIRNFQPPVSGEEIMKTFNLPPCRQVG 438
Query: 383 NILVHCKQEWINSSFQLSQEDLHHL 407
+ K ++ E
Sbjct: 439 ALKSAIKDAILDGVIPNDYEAARAF 463
>gi|325965282|ref|YP_004243188.1| tRNA adenylyltransferase [Arthrobacter phenanthrenivorans Sphe3]
gi|323471369|gb|ADX75054.1| tRNA adenylyltransferase [Arthrobacter phenanthrenivorans Sphe3]
Length = 501
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 84/470 (17%), Positives = 144/470 (30%), Gaps = 59/470 (12%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
+ D ++ + + +VGG VRD + + D+D T PD+ +
Sbjct: 8 TDSPTVDFQVDPVVLELGQRFVDAGHELSLVGGPVRDLFLGRTSPDLDFTTDATPDQTVA 67
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRR 120
+ K ++GTI + ++TT R D R V F D LRR
Sbjct: 68 LIKKWADNYWEIGRAFGTIGMRKAGFQIEVTTYRAEAYDPDSRKPVVAFGSSLTDDLLRR 127
Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINA+ +++D GG+ DL + G +D LR++R RF A G
Sbjct: 128 DFTINAMALKLPSLELVDPFGGVRDLHASVLATPGAPELSFSDDPLRMMRAARFAAQLGV 187
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG----------- 228
+ + + I+S+ER+ E+ KL+ P + + +
Sbjct: 188 SVHPDVHKAMT-DMAERITIISAERVRDELVKLICGAQPRAGVDLLVDTGLAEFVLPEVS 246
Query: 229 -----GIFKEIFLDVQEISLDQLSQVIEAEQVFEWK---IDSLLRFIVLISWQDKKSILS 280
DV + SL L Q + E E D +LRF L+ K +
Sbjct: 247 ALRLESDEHHRHKDVYQHSLQVLEQAAQLETDAEGPVPGPDFVLRFAALMHDVGKPATRR 306
Query: 281 M----------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK--- 315
K + + +
Sbjct: 307 FEPGGAVSFRHHDMVGAKLTSKRMKALRFDNDTTKAVARLVELHMRFYGYGEAGWSDSAV 366
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI----------LQVLSDIIHWKKPLFPL 365
Y+ ++ +L + + + L + L
Sbjct: 367 RRYVTDAGPLLERLHRLTRSDVTTRNQRKAERLAFAYDDLEARIAALREQESLDAVRPDL 426
Query: 366 TGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
G ++ + PG VG E + + L E+ L + A
Sbjct: 427 DGARIMALLDLKPGPVVGRAYKFLLNERMENG-PLPAEEAEARLLRWWAE 475
>gi|295084899|emb|CBK66422.1| tRNA nucleotidyltransferase/poly(A) polymerase [Bacteroides
xylanisolvens XB1A]
Length = 477
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 74/453 (16%), Positives = 158/453 (34%), Gaps = 59/453 (13%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + + +VGG VRD + +DID+ + K + +
Sbjct: 20 QIAETADAFGMECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133
++GT ++ R + R + +V + D RRDFTINAL
Sbjct: 80 KNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKA 139
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GG+ D++ +TI+ D +D LR++R RF G ID D +
Sbjct: 140 RFGELVDPFGGMEDMKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLGFY-IDDDTFESL 198
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241
+ K+ ++I+S ERI E+NK++ + P + + G+ IF + +
Sbjct: 199 CRNKERIEIISRERIADELNKIILSPIPSKGFIDLERSGLLPLIFPEFAALQGVETRNGR 258
Query: 242 --SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------ 281
+ + + + + + LR+ L+ K
Sbjct: 259 SHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPVTKRWEPKAGWTFHNHNFIGEKM 318
Query: 282 -----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
K E ++ + + ++ + + + L
Sbjct: 319 IPHIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMMLC 378
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++ + L++ + P++G+++++ +G+ P ++VG
Sbjct: 379 EADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQPPVSGEEIMEIFGLEPCREVG 438
Query: 383 NILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
+ K ++ E +K+
Sbjct: 439 VLKSAIKDAILDGVIPNEYEAAHAFMLERAKKM 471
>gi|68537183|ref|YP_251888.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium K411]
gi|68264782|emb|CAI38270.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium K411]
Length = 547
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 86/483 (17%), Positives = 163/483 (33%), Gaps = 80/483 (16%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D DL+ + +VGG+VRD+L+ D+D T P ++ I + V
Sbjct: 62 DRDLLPLTQAFQDAGHSLYLVGGSVRDALLGRLSHDLDFTTDARPQAIVDIVTPLAETVW 121
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYA- 129
T I YGT+ + + + +ITT R+D R +V F D +RRDF NA+
Sbjct: 122 DTGIEYGTVSALVKGQILEITTFRADQYDGQSRNPEVSFGDSLDGDLIRRDFRANAIALE 181
Query: 130 ---DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
D ++ D +GGL DL+ + +D LR+LR RF + E +
Sbjct: 182 LSPDGNHQLRDPLGGLEDLQAGVLDTPDSPEISFNDDPLRMLRACRFVSQL-EFGVTKRV 240
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ- 245
A + + ++ ER+ E+NKL+ P + M G+ + ++ + L Q
Sbjct: 241 KEAMAAMSEQISRITVERVAVELNKLMLGAAPWVGLDLMVETGLADHVLPELPALKLTQD 300
Query: 246 ---------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS------------- 277
L + E + LR L+ K
Sbjct: 301 EHRQHKDVYWHSLKVLRNAVNLEAERGLEPSLELRMAALLHDIGKPDTRAFTESGAVTFH 360
Query: 278 ---------ILSMAKKFSLPREIRYFLISFFNCNFNQK---------------------- 306
+K ++ + +
Sbjct: 361 QHEVVGARITRRRLRKLKYSKQHVQDIGQLVFLHMRFHGYADTQGKGQNQDARRGAGEKD 420
Query: 307 ----TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN--------LTHQDTCFILQVLSD 354
T + +++ G+ + + L + N T+ + ++ L +
Sbjct: 421 NNESTWTDSAVRRYVNDAGELLPLLHLLVRADCTTRNQRKAQRLQRTYDNLEKRIEQLQE 480
Query: 355 IIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
L G+++++ + PG VG + K+ ++ + +ED L++
Sbjct: 481 QEDLAAVRPDLDGNEIMQILDLKPGPDVGKAWAYLKELRLDRG-PMEREDAIAALKQWWG 539
Query: 414 SSQ 416
+
Sbjct: 540 EQK 542
>gi|224536185|ref|ZP_03676724.1| hypothetical protein BACCELL_01051 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522198|gb|EEF91303.1| hypothetical protein BACCELL_01051 [Bacteroides cellulosilyticus
DSM 14838]
Length = 476
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 72/454 (15%), Positives = 153/454 (33%), Gaps = 59/454 (12%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPT 73
I ++ + +VGG VRD + +DID+ + K + +
Sbjct: 19 KRISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIEMAEALGKCLGRGAHVAV 78
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
++GT ++ R + R + +V + D RRDFTINAL
Sbjct: 79 FKNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNQ 138
Query: 134 ----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+++D GG+ DL+ +TI+ D +D LR++R RF ID +
Sbjct: 139 SRFGELVDPFGGIEDLKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IDDATFES 197
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-------- 241
+ + + I+S ERI E+NK+L + P + + G+ IF ++ +
Sbjct: 198 LCRNCERISIISKERIAEELNKILLSPVPSKGFIDLDRSGLLPLIFPELAALQGVETRNG 257
Query: 242 ---SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------------- 281
+ + + + + LR+ L+ K
Sbjct: 258 RAHKDNFYHTLEVLDNISRKTDNLWLRWAALLHDIAKPVTKRWEPRAGWTFHNHNFIGEK 317
Query: 282 ------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335
+ E ++ + + ++ + + + L
Sbjct: 318 MVPEIFRRMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMTL 377
Query: 336 HYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKV 381
++T ++ + L++ + P++G++++K + + P ++V
Sbjct: 378 CEADITSKNMERKQRFLNNFQLVRQKLKDLEERDRVRNFQPPISGEEIMKTFNLEPCQQV 437
Query: 382 GNILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
G + K ++ E K+
Sbjct: 438 GTLKSAIKDAILDGVIPNEYEAARTFMLQRAEKM 471
>gi|297158774|gb|ADI08486.1| RNA nucleotidyltransferase [Streptomyces bingchenggensis BCW-1]
Length = 496
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 84/463 (18%), Positives = 164/463 (35%), Gaps = 62/463 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ +VGG+VRD+L+ D+D T P+ V++I V
Sbjct: 32 SPVADDLARRFEAAGFGLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADAVW 91
Query: 72 PTSISYGTIKIICRK---------KYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRD 121
I++GT+ +ITT RS+ R +V + D +RRD
Sbjct: 92 EVGIAFGTVGCRKEGGNGNGSSQSFQIEITTYRSEAYDRTSRKPEVSYGDSIDEDLVRRD 151
Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NA+ + + ID GL DL + ++ G +D LR++R RF A
Sbjct: 152 FTVNAMAVALPRKEFIDPHNGLEDLAAKVLRTPGTPEESFSDDPLRMMRAARFAAQLDF- 210
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
++ + + A ++I+S+ER+ E+NKL+ A P+ + + + G+ + ++
Sbjct: 211 DVAPEVIAAMKAMAGRIEIVSAERVRDELNKLILAARPVKGLRLLVDTGLADHVLPELPA 270
Query: 241 ISLDQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKK----------- 276
+ L++ L+ + +A + + D +LR L+ K
Sbjct: 271 LRLERDEHHRHKDVYEHTLTVLEQAIALEKDGPDLVLRLAALLHDIGKPKTRRFEKDGRV 330
Query: 277 -----------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGD 322
S K E+ + + E Y+
Sbjct: 331 SFHHHEVVGAKMTKSRMTKLKYSNELVKEVSHLVELHLRFHGYGTGEWTDSAVRRYVRDA 390
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK 372
++ +L + + + + L G++++K
Sbjct: 391 GPLLERLHKLTRSDCTTRNKRKAGALSRAYDGLEERIARLQQQEQLDAIRPDLDGNEIMK 450
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
GI PG +VG H + + + ++ L+ A+
Sbjct: 451 ILGIGPGPQVGKAYKHLLELRLEHG-PMERDAAVTALQDWWAA 492
>gi|229815493|ref|ZP_04445824.1| hypothetical protein COLINT_02543 [Collinsella intestinalis DSM
13280]
gi|229808930|gb|EEP44701.1| hypothetical protein COLINT_02543 [Collinsella intestinalis DSM
13280]
Length = 481
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 84/459 (18%), Positives = 157/459 (34%), Gaps = 65/459 (14%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +LS L ++ IVGG VRD+LM DIDI + + V+
Sbjct: 24 SAASLTVLSALEGAGLEAWIVGGWVRDALMGAPGHDIDICCSGSWEESAAALRSRGIAVV 83
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYA 129
+ + +G I + ++T R D TDGR+ + + D RRDFT+NA+
Sbjct: 84 ESGVKFGGITAVVDGARIEVTAYRLDGFYTDGRHPENVQRATCVEDDLARRDFTVNAMAW 143
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
++D G DL R I+ +G+ R ED LR+LR RF +D A
Sbjct: 144 HPARGLLDCYDGRGDLERRQIRAVGEPRRRFEEDALRMLRAVRFACRLDF-AMDPATAQA 202
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ L ++ ER+ E+ +L ++ +A+ + + ++ +
Sbjct: 203 LAECAPLLDQVARERVGIELEGILVTRHGGDAL--IRYPELMCAAIPELARMRGFDQRTP 260
Query: 250 IEAEQVFEW-----------------------KIDSLLRFIVLISWQDKKS--------- 277
A V++ L + L+ K
Sbjct: 261 YHAFDVYDHTARVLTVAGELSRFRIDGGDPSAPPSPSLMWAALLHDIAKPDCFTVDERGR 320
Query: 278 -------------ILSMAKKFSLPREIRYFLISFFNCN---FNQKTLSIPEIKKLFYLYG 321
+ ++ S ++ + + + N +S+ + F G
Sbjct: 321 GHFYGHPEAGAKLAEKIIRRLSCSNDLIRDVSLLIHDHDCPLNPDRISLLRQMQRFARSG 380
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFI------------LQVLSDIIHWKKPLFPLTGDD 369
++ + L CF ++L++ + L G D
Sbjct: 381 VDTARLMGELLDLKRADTLGKASGCFYYVEEIERMREMCRELLANREAYSIKTLDLAGSD 440
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ G+ PG ++G L + I + +E L L
Sbjct: 441 LIARGMAPGPRIGEALNRALEGAIVGAVANEREALLAYL 479
>gi|29347385|ref|NP_810888.1| tRNA nucleotidyltransferase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339285|gb|AAO77082.1| tRNA nucleotidyltransferase [Bacteroides thetaiotaomicron VPI-5482]
Length = 502
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 76/444 (17%), Positives = 162/444 (36%), Gaps = 55/444 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTSI 75
I + + +VGG VRD + +DID+ + K + +
Sbjct: 46 IAETADALGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAYVSVFK 105
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-- 133
++GT ++ + + R + +V + D RRDFTINA+
Sbjct: 106 NFGTAQVKYKGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINAMAVCLNKAR 165
Query: 134 --KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+++D GG+ D++ +TI+ D +D LR++R RF ID D +
Sbjct: 166 FGELVDPFGGMADMKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IDDDTFESLC 224
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------- 241
+ K ++I+S ERI E+NK++ + P V + G+ IF ++ +
Sbjct: 225 RNKDRIEIISRERIADELNKIILSPIPSKGFVELERSGLLPLIFPELAALQGVETRNGRS 284
Query: 242 -SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----AKKFSLPREI-RYFL 295
+ + + + + + LR+ L+ K + F I +
Sbjct: 285 HKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPKAGWTFHNHNFIGEKMI 344
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AKLKIFLALHY 337
+ F + ++K+ L+ ++I + + L
Sbjct: 345 PNIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMTLCE 404
Query: 338 NNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVGN 383
++T ++ + L++ + P++G+++++ +G+ P ++VG
Sbjct: 405 ADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQPPVSGEEIMETFGLQPCREVGA 464
Query: 384 ILVHCKQEWINSSFQLSQEDLHHL 407
+ K ++ E H
Sbjct: 465 LKSAIKDAILDGVIPNEYEAAHAF 488
>gi|325280081|ref|YP_004252623.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Odoribacter splanchnicus DSM 20712]
gi|324311890|gb|ADY32443.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Odoribacter splanchnicus DSM 20712]
Length = 467
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 76/459 (16%), Positives = 155/459 (33%), Gaps = 58/459 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR-IFSKTRY 68
+ + + ++ ++GG VRD L+ QDIDI + +
Sbjct: 5 LKHPIFKILSGIAAEKGIEAYVIGGYVRDLLLQRPSQDIDIVVHGSGIELAETAARRLGN 64
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ ++GT + + R + +V D RRDFTINAL
Sbjct: 65 LRVSVFKNFGTAMFRYKGMEIEFVGARKESYRANSRKPIVEEGTIDDDQKRRDFTINALA 124
Query: 129 ADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ D GGL L R IK + +D LR++R RF + + I+
Sbjct: 125 ISLNQENYGVLIDPFGGLQHLEERLIKTPLEPGLTFSDDPLRMMRAIRFASQLNFQ-IEE 183
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--- 241
+ A + + L I+S ERI E NK++ + P I + G+ + F ++ +
Sbjct: 184 NTFQAIAEYRHRLPIVSMERIMDEFNKIMLSPEPSRGIRLLDEAGLLEIFFPELTALKGV 243
Query: 242 --------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL------ 287
+ + + + + D LR+ L+ K + +
Sbjct: 244 DRVQGVKHKDNFYHTLTVLDTLSLYSQDLWLRWAALLHDIGKPATKKYIQGQGWTFYGHN 303
Query: 288 -----------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330
E ++ N + LS + +
Sbjct: 304 HVGERLVGKIFNRLKLPQNEKMKYVQKLVNLHMRPIVLSEETVTDSAVRRLLFDAGDDID 363
Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGIP 376
+ L ++T ++ + + L + ++ P++G++++ + +P
Sbjct: 364 DLMTLAEADITSKNEEKVKRFLENFKTVRRKLKEVEEKDSIRNFQPPISGEEIIATFHLP 423
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHL----LRKL 411
P K +G+I K+ ++ + E+ ++L
Sbjct: 424 PCKTIGDIKNAIKEAILDGIIGNNYEEAREYMFKVAKEL 462
>gi|227487679|ref|ZP_03917995.1| possible tRNA adenylyltransferase [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227092373|gb|EEI27685.1| possible tRNA adenylyltransferase [Corynebacterium glucuronolyticum
ATCC 51867]
Length = 477
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 98/456 (21%), Positives = 169/456 (37%), Gaps = 56/456 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L ++ N+ ++ +VGG+VRDSL+ D+D T+ LPD I S+ V T
Sbjct: 24 LTSLAGEFNRHGEELYLVGGSVRDSLLGRLAGDLDFTTSALPDVTHDILSEWADAVWDTG 83
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA---- 129
I YGTI + +ITT R+D R V F + D +RRDFTINA+
Sbjct: 84 IEYGTISAAKDGQQVEITTFRADTYDGTSRNPVVKFGDTLEGDLVRRDFTINAMAIALSP 143
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D +GGL L+NR I +D LR+LR RF A E ++ + + A
Sbjct: 144 TGDHTFCDPLGGLTALQNRIIDTPDAPEISFGDDPLRMLRAARFAAQL-EFDVATRVVDA 202
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------- 238
+ ++ ERI +E++KL+ P I + GI IF ++
Sbjct: 203 MTTMAAEIDRITRERIQAEMDKLICGAAPWRGIDLLVETGIMDRIFPEISALKALGDEHN 262
Query: 239 --QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-------------------- 276
+++ L+ + +A + E D +LR+ L+ K
Sbjct: 263 QHKDVYQHSLTVLRQAMEQEEDGPDLVLRWAALLHDIGKPQTKRVLDNGQVTFHQHDVVG 322
Query: 277 --SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
+ ++ + + E Y+ ++ +L
Sbjct: 323 AKMARKRLRALKYSKQDIKDISQLIYLHMRFYGFPEGEWTDSAVRRYVTDAGSLLPRLHK 382
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKK 380
+ + +I + D+ + L G+++++ GI PG
Sbjct: 383 LVRADTTTRNKKKARWISRAYDDLEQRIAELAEKEDLARVRPDLDGNEIMEILGITPGPA 442
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
VG K+ ++ L ++ L+K Q
Sbjct: 443 VGKAWTFMKELRLDRG-PLPHDEAVAALKKWWKEQQ 477
>gi|310821276|ref|YP_003953634.1| tRNA nucleotidyltransferase/poly(a) polymerase family protein
[Stigmatella aurantiaca DW4/3-1]
gi|309394348|gb|ADO71807.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Stigmatella aurantiaca DW4/3-1]
Length = 423
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 90/412 (21%), Positives = 157/412 (38%), Gaps = 22/412 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++++L L + + +VGG VRD L ++ +D D+A++ LP V F KVIPT
Sbjct: 14 PILDVLHRLRELGFAAFLVGGCVRDILRGVAPKDFDVASSALPQEVQGAFK----KVIPT 69
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++TT RS+ T D D RRDFTINA+ D
Sbjct: 70 GIQHGTVTVVIGGNHVEVTTFRSEGDYLDGRRPSSVTFERDITQDLSRRDFTINAMAYDP 129
Query: 132 QGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G+V +D GG+ DL+ I+ + R ED LR +R RF A G +
Sbjct: 130 VGQVLVDPFGGMEDLQAHLIRCVRSPLERFSEDGLRPMRAVRFAAVLGFTLEPATREAIP 189
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K ++ ER+ E KLL + + + G+ + ++ + + +
Sbjct: 190 PTLPIF-KKVALERVREEFVKLLLSPRAELGLTLLGETGLLEVFLPELAQAGEEAVRLAR 248
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
A Q +++ L + + + L +
Sbjct: 249 AAAQAAPAEVEIRL---AALLADLVRGAQARDIALRLKFPTKAADTMAVLVEHAFLERRT 305
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK----------K 360
+ +V A L+ LA+ + + + +VL+ +
Sbjct: 306 GDADPALRRLLAQVGPALLEPLLAVARARVEARQRDRLPEVLALQERLRALLAAKPPLTP 365
Query: 361 PLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
L+G D++ GI P +VG + ++ E L LLR
Sbjct: 366 KELALSGKDIMATLGIGPSPQVGEATRFLMEAVFDAPDLNESERLKDLLRTW 417
>gi|198277607|ref|ZP_03210138.1| hypothetical protein BACPLE_03829 [Bacteroides plebeius DSM 17135]
gi|198270105|gb|EDY94375.1| hypothetical protein BACPLE_03829 [Bacteroides plebeius DSM 17135]
Length = 536
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 78/448 (17%), Positives = 162/448 (36%), Gaps = 56/448 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTSI 75
I ++ + +VGG VRD +N +DID+ + + F K + +
Sbjct: 75 ISETADELGLECYVVGGYVRDIFLNRPSKDIDVVVVGSGIEMAQAFGKKLGRGAHVSVFK 134
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-- 133
++GT ++ + + R + + +V + D RRDFTINA+
Sbjct: 135 NFGTAQVKFKDTEVEFVGARKESYSHDSRKPIVEDGTLEDDQNRRDFTINAMAVCLNKAR 194
Query: 134 --KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+++D GGL+DL+ RTI+ D +D LR++R RF ID + A
Sbjct: 195 FGELVDPFGGLDDLKERTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IDDETFEALE 253
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------- 241
+ K+ +KI+S ERI E+NK+L + P + + G+ + IF ++ +
Sbjct: 254 RNKERIKIISRERIADELNKILLSPVPSKGFIDLDRCGLLELIFPELVALQGVEVRNGRG 313
Query: 242 -SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------- 281
+ + + + D LR+ L+ K
Sbjct: 314 HKDNFYHTLEVVDNISRVSNDLWLRWATLLHDIGKPRTKRWEPKAGWTFHNHNFIGEKMI 373
Query: 282 ----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
K E ++ + ++ E+ + + L
Sbjct: 374 PEIFRKMKLPMNEKMKYVQKLVGLHMRPIVIADEEVTDSAVRRLLFEAGDDIDDLMMLCE 433
Query: 338 NNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVGN 383
++T ++ + L + + P+ G ++++ + + P +++G+
Sbjct: 434 ADITSKNEARKQRFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGAEIMQVFNLQPCREIGS 493
Query: 384 ILVHCKQEWINSSFQLSQEDLHHL-LRK 410
+ K ++ + + L+K
Sbjct: 494 LKSSIKDAILDGAIPNEHDAAFEYMLKK 521
>gi|294809798|ref|ZP_06768482.1| HD domain protein [Bacteroides xylanisolvens SD CC 1b]
gi|294443038|gb|EFG11821.1| HD domain protein [Bacteroides xylanisolvens SD CC 1b]
Length = 474
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/453 (16%), Positives = 158/453 (34%), Gaps = 59/453 (13%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + + +VGG VRD + +DID+ + K + +
Sbjct: 17 QIAETADALGMECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVF 76
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133
++GT ++ R + R + +V + D RRDFTINAL
Sbjct: 77 KNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKA 136
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GG+ D++ +TI+ D +D LR++R RF G ID D +
Sbjct: 137 RFGELVDPFGGMEDMKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLGFY-IDDDTFESL 195
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241
+ K+ ++I+S ERI E+NK++ + P + + G+ IF + +
Sbjct: 196 CRNKERIEIISRERIADELNKIILSPIPSKGFIDLERSGLLPLIFPEFAALQGVETRNGR 255
Query: 242 --SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------ 281
+ + + + + + LR+ L+ K
Sbjct: 256 SHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPVTKRWEPKAGWTFHNHNFIGEKM 315
Query: 282 -----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
K E ++ + + ++ + + + L
Sbjct: 316 IPHIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMMLC 375
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++ + L++ + P++G+++++ +G+ P ++VG
Sbjct: 376 EADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQPPVSGEEIMEIFGLEPCREVG 435
Query: 383 NILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
+ K ++ E +K+
Sbjct: 436 VLKSAIKDAILDGVIPNEYEAAHAFMLERAKKM 468
>gi|298385155|ref|ZP_06994714.1| polyA polymerase family protein [Bacteroides sp. 1_1_14]
gi|298262299|gb|EFI05164.1| polyA polymerase family protein [Bacteroides sp. 1_1_14]
Length = 477
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 76/444 (17%), Positives = 161/444 (36%), Gaps = 55/444 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTSI 75
I + + +VGG VRD + +DID+ + K + +
Sbjct: 21 IAETADALGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVFK 80
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-- 133
++GT ++ + R + +V + D RRDFTINA+
Sbjct: 81 NFGTAQVKYNGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINAMAVCLNKAR 140
Query: 134 --KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+++D GG+ D++ +TI+ D +D LR++R RF ID D +
Sbjct: 141 FGELVDPFGGMADMKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IDDDTFESLC 199
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------- 241
+ K ++I+S ERI E+NK++ + P V + G+ IF ++ +
Sbjct: 200 RNKDRIEIISRERIADELNKIILSPIPSKGFVELERSGLLPLIFPELAALQGVETRNGRS 259
Query: 242 -SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----AKKFSLPREI-RYFL 295
+ + + + + + LR+ L+ K + F I +
Sbjct: 260 HKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPKAGWTFHNHNFIGEKMI 319
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AKLKIFLALHY 337
+ F + ++K+ L+ ++I + + L
Sbjct: 320 PNIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMTLCE 379
Query: 338 NNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVGN 383
++T ++ + L++ + P++G+++++ +G+ P ++VG
Sbjct: 380 ADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQPPVSGEEIMETFGLQPCREVGA 439
Query: 384 ILVHCKQEWINSSFQLSQEDLHHL 407
+ K ++ E H
Sbjct: 440 LKSAIKDAILDGVIPNEYEAAHAF 463
>gi|325854980|ref|ZP_08171696.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Prevotella denticola CRIS 18C-A]
gi|325483958|gb|EGC86898.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Prevotella denticola CRIS 18C-A]
Length = 474
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 80/462 (17%), Positives = 160/462 (34%), Gaps = 56/462 (12%)
Query: 10 FHDSDLIN-ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
D D+ + I +K + +VGG VRD + DID+ +V
Sbjct: 12 LLDKDIFHHISGAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVASELKSVLG 71
Query: 69 K--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
K + ++GT ++ + + R + + VV + D RRDFTINA
Sbjct: 72 KKAHLSVFRNFGTAQVKYKDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINA 131
Query: 127 LYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L + D GG++DL N I+ D +D LR++R RF I
Sbjct: 132 LAVCLNRERFGELVDPFGGVDDLWNGIIRTPLDPDVTFSDDPLRMMRCVRFATQLNFL-I 190
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ + A + ++I+S ERI E+NK++ P V +Y G+ + I ++
Sbjct: 191 EDETFEALERNADRIRIVSGERIEEELNKIMMTPTPSKGFVDLYRCGLLQLILPELVALD 250
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSL 287
+ + + + + + LR+ L+ K F
Sbjct: 251 VVETRNGRAHKNNFYHTLEVLDNICRHTDNLWLRWAALLHDIGKAKCKRWDAAAGWTFHN 310
Query: 288 PREI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ ++ + + ++ E+
Sbjct: 311 HNFVGAKMVPAIFRRLKLPMDSKMKYVQKLVDLHMRPIVIADEEVSDSAVRRLMNDAGDD 370
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY-G 374
+ + L ++T ++ + L + ++ + G+++++
Sbjct: 371 IDDLMTLCEADITSKNAVRKKRFLDNFRIVREKLRDLKERDYKRLLQPCIDGNEIMEMFH 430
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ P ++VG + K +++ +E L LLRK A +
Sbjct: 431 LRPSREVGTLKQTLKDAVLDNQVPNEREPLLALLRKKAAELE 472
>gi|309811302|ref|ZP_07705089.1| tRNA adenylyltransferase [Dermacoccus sp. Ellin185]
gi|308434609|gb|EFP58454.1| tRNA adenylyltransferase [Dermacoccus sp. Ellin185]
Length = 509
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 83/467 (17%), Positives = 158/467 (33%), Gaps = 68/467 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L + L + +VGG VRD+ ++ + D+D T+ PD RI +
Sbjct: 40 PLLRQLGELFAGAGHEIALVGGPVRDAFLSRTSPDLDFTTSARPDDTERIVAGWADATWD 99
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130
++GTI + +ITT R+D + R V F D +RRDFT+NA+
Sbjct: 100 LGRAFGTIGVRKGGVQVEITTYRADAYDRETRKPVVEFGDSLDDDLVRRDFTVNAMALRL 159
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+D GGL DL ++ D +D LR++R RF + G ++ + A
Sbjct: 160 PDLTFVDPYGGLADLAAGVLRTPTDPEVSFGDDPLRMMRAARFSSQLGF-DVAPEAFRAM 218
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ ++++S+ER+ E+ KLL + P + + GI + + ++ ++L+ + +
Sbjct: 219 REMAASIEMISAERVRDELVKLLMSPTPRRGLELLVESGIAEHVLPELPALALE-IDEHH 277
Query: 251 EAEQVFEWK---------------------------IDSLLRFIVLISWQDKKSILSM-- 281
+ V+E D +LR L+ K
Sbjct: 278 RHKDVYEHSLIVLEQAMALEGPREVPGVEAPTEVEGPDLVLRLAALLHDIGKPDTRRFEP 337
Query: 282 --------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFY 318
+ +E + + E Y
Sbjct: 338 GGGVSFHHHELVGAKMTRKRLRALRFDKETIKQVSRLVELHLRFHGYGNGEWTDSAVRRY 397
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII----------HWKKPLFPLTGD 368
+ ++ +L + + + D+ L G+
Sbjct: 398 VTDAGPLLPRLHLLTRADSTTRNKRKAARLQATYDDLEARIERLQAEEELAAVRPELDGN 457
Query: 369 DVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++ GI PG +G H ++ + ++ LR+ A
Sbjct: 458 EIQAVLGIKPGPVLGRAYKHLLAVRLDEGV-IGKDAASERLREWWAQ 503
>gi|237714012|ref|ZP_04544493.1| tRNA nucleotidyltransferase [Bacteroides sp. D1]
gi|262407064|ref|ZP_06083613.1| tRNA adenylyltransferase [Bacteroides sp. 2_1_22]
gi|229445836|gb|EEO51627.1| tRNA nucleotidyltransferase [Bacteroides sp. D1]
gi|262355767|gb|EEZ04858.1| tRNA adenylyltransferase [Bacteroides sp. 2_1_22]
Length = 477
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/453 (16%), Positives = 158/453 (34%), Gaps = 59/453 (13%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + + +VGG VRD + +DID+ + K + +
Sbjct: 20 QIAETADALGMECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133
++GT ++ R + R + +V + D RRDFTINAL
Sbjct: 80 KNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKA 139
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GG+ D++ +TI+ D +D LR++R RF G ID D +
Sbjct: 140 RFGELVDPFGGMEDMKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLGFY-IDDDTFESL 198
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241
+ K+ ++I+S ERI E+NK++ + P + + G+ IF + +
Sbjct: 199 CRNKERIEIISRERIADELNKIILSPIPSKGFIDLERSGLLPLIFPEFAALQGVETRNGR 258
Query: 242 --SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------ 281
+ + + + + + LR+ L+ K
Sbjct: 259 SHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPVTKRWEPKAGWTFHNHNFIGEKM 318
Query: 282 -----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
K E ++ + + ++ + + + L
Sbjct: 319 IPHIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMMLC 378
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++ + L++ + P++G+++++ +G+ P ++VG
Sbjct: 379 EADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQPPVSGEEIMEIFGLEPCREVG 438
Query: 383 NILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
+ K ++ E +K+
Sbjct: 439 VLKSAIKDAILDGVIPNEYEAAHAFMLERAKKM 471
>gi|145597083|ref|YP_001161380.1| HDIG domain-containing protein [Salinispora tropica CNB-440]
gi|145306420|gb|ABP57002.1| HDIG domain protein [Salinispora tropica CNB-440]
Length = 485
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 87/459 (18%), Positives = 159/459 (34%), Gaps = 61/459 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +VGG+VRD+L+ D+D T PD+ +RI +
Sbjct: 29 SPVADELGRRFASAGHELHLVGGSVRDALLGRLGDDLDFCTDAHPDQTLRIVRGWAEAIW 88
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T +GTI + +ITT R++ R V + D RRDFT+NA+
Sbjct: 89 ETGREFGTIGVQRDGLRLEITTFRAEVYDQVSRNPVVQYGTSLAEDLKRRDFTVNAMAVS 148
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + ID GGL DL + ++ +D LR+LR RF A
Sbjct: 149 LPEHRFIDPHGGLADLAAKVVRTPAAPEESFRDDPLRMLRAARFAAQLRFAVHPDVRAAM 208
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
A +++ERI E KLL +P+ + + + G+ + ++ + L+ + +
Sbjct: 209 VRMAADL-DRITAERIRDEFTKLLCGADPIAGLRLLADTGLAERFLPELTGLKLE-IDEH 266
Query: 250 IEAEQVFEWKI--------------DSLLRFIVLISWQDKK------------------- 276
+ + V+E + D +LR L+ K
Sbjct: 267 AQHKDVYEHTLTVVRNAVTYEEDGCDFILRMAALMHDVGKPATKAVGPDGRVSFHHHEVV 326
Query: 277 ---SILSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAK 328
+ K P+E + + + + + +++ GD ++A+
Sbjct: 327 GARMTKARMKALRFPKETTTKVTALVALHLRFYGYGRGEWTDSAVRRYVTDAGD--VLAR 384
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + + + L G+ +++ G+PP
Sbjct: 385 LHKLTRSDCTTRNRRKAAQLAADYDALEERIARLAAEEDLARVRPDLDGNAIMELLGVPP 444
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G VG H K+ + E LLR S +
Sbjct: 445 GPVVGQAWKHLKEVRLERGPLGRDEAEAELLR---WSRE 480
>gi|15834702|ref|NP_296461.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg]
gi|270284868|ref|ZP_06194262.1| polyA polymerase [Chlamydia muridarum Nigg]
gi|270288895|ref|ZP_06195197.1| polyA polymerase [Chlamydia muridarum Weiss]
gi|7190112|gb|AAF38959.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg]
Length = 410
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 90/402 (22%), Positives = 161/402 (40%), Gaps = 13/402 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I+ L ++ VGG+VRD L++ ++++DIAT P V IF +
Sbjct: 9 AKKIVQKLRNAGYQAYFVGGSVRDMLLDRPIEEVDIATNASPTIVTTIFPD----TLSIG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D
Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYADGRHPNRVIFASMKDDAIRRDFTINGMYYDPFE 124
Query: 134 KV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D V G DL + ++ IG R LED LRILR RF A G + +
Sbjct: 125 EKLFDLVEGRADLERKVVRAIGHPKQRFLEDKLRILRAIRFAATLGFSLDPKTEIAIIKE 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
A +S ERIW E+ K+L P ++ + + IF +++ L I
Sbjct: 185 APSLPTSVSPERIWQELKKMLRKA-PYESLQLLIKLKVLPIIFPELKASPSGFLRSTIAF 243
Query: 253 EQVFEWKIDSLLRFIVLISWQ-DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
Q + F++ + + ++ ++ + + + L ++ +
Sbjct: 244 AQRIRDPHIPEIAFLLPLFQEVKQEEAIAAFSRLKVSNKELGLLEDWYEALPQFRAKQNN 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL----QVLSDIIHWKKPLFPLTG 367
+I + + + + ++ S I + ++
Sbjct: 304 KIFWAHFFASQTSPLLLSLFLSLQRTPHEQELFISRVHHLKTRLASFIERIQTGSPLVSA 363
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D++ GI PG+ +G +L + I +E + LL+
Sbjct: 364 PDLMARGIAPGRLLGELLKEAEALSIEHECS-DKEKILSLLK 404
>gi|227541389|ref|ZP_03971438.1| possible tRNA adenylyltransferase [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227182940|gb|EEI63912.1| possible tRNA adenylyltransferase [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 477
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 98/456 (21%), Positives = 170/456 (37%), Gaps = 56/456 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L ++ N+ ++ +VGG+VRDSL+ D+D T+ LPD I S+ V T
Sbjct: 24 LTSLAGEFNRHGEELYLVGGSVRDSLLGRLAGDLDFTTSALPDITHDILSEWADAVWDTG 83
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA---- 129
I YGTI + +ITT R+D + R V F + D +RRDFTINA+
Sbjct: 84 IEYGTISAAKDGQQVEITTFRADTYDGNSRNPVVKFGDTLEGDLVRRDFTINAMAIALSP 143
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D +GGL L+NR I +D LR+LR RF A E ++ + + A
Sbjct: 144 TGDHTFCDPLGGLTALQNRIIDTPDAPEISFGDDPLRMLRAARFAAQL-EFDVATRVVDA 202
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------- 238
+ ++ ERI +E++KL+ P I + GI IF ++
Sbjct: 203 MTTMAAEIDRITRERIQTELDKLICGAAPWRGIDLLVETGIMDRIFPEISALKALGDEHN 262
Query: 239 --QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-------------------- 276
+++ L+ + +A + E D +LR+ L+ K
Sbjct: 263 QHKDVYQHSLTVLRQAMEQEEDGPDLVLRWAALLHDIGKPQTKRVLDNGQVTFHQHDVVG 322
Query: 277 --SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
+ ++ + + E Y+ ++ +L
Sbjct: 323 AKMARKRLRALKYSKQDIKDISQLIYLHMRFYGFPEGEWTDSAVRRYVTDAGSLLPRLHK 382
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKK 380
+ + +I + D+ + L G+++++ GI PG
Sbjct: 383 LVRADTTTRNKKKARWISRAYDDLEQRIAELAEKEDLARVRPDLDGNEIMEILGITPGPA 442
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
VG K+ ++ L ++ L+K Q
Sbjct: 443 VGKAWTFMKELRLDRG-PLPHDEAVAALKKWWKEQQ 477
>gi|328883719|emb|CCA56958.1| tRNA nucleotidyltransferase [Streptomyces venezuelae ATCC 10712]
Length = 474
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 82/462 (17%), Positives = 163/462 (35%), Gaps = 61/462 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +VGG+VRD+L+ D+D T P+ V++I V
Sbjct: 13 SPVADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVW 72
Query: 72 PTSISYGTIKIICRK--------KYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDF 122
I++GT+ + ++TT RS+ R +V + D +RRDF
Sbjct: 73 EVGIAFGTVGCQKQGRVGDADQSFQIEVTTYRSEAYDRTSRKPEVSYGDSIDQDLVRRDF 132
Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T+NA+ + + ID GGL DL R ++ G +D LR++R RF A
Sbjct: 133 TVNAMAVALPEKEFIDPYGGLEDLAARVLRTPGTPEESFSDDPLRMMRAARFAAQLDF-E 191
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ + + A + ++I+S+ER+ E+NKLL + +P + + + G+ + + ++ +
Sbjct: 192 VAPEVVTAMKEMSGRIEIVSAERVREELNKLLLSAHPRKGLGLLVDTGLAEHVLPELPAL 251
Query: 242 SLD-------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK------------ 276
L+ L+ + +A + E D +LR L+ K
Sbjct: 252 RLESDEHHRHKDVYEHSLTVLDQAIDLEEDGPDLVLRLAALLHDIGKPRTRRFEKDGRVS 311
Query: 277 ----------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDK 323
E+ + + E Y+
Sbjct: 312 FHHHEVVGAKMTKKRMTALKYSNEMIKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAG 371
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVVK- 372
M+++L + + + + L G+ + +
Sbjct: 372 PMLSRLHKLTRSDCTTRNKRKASALSRAYDGLEDRIAQLQEQEELDAIRPDLDGNQIQEI 431
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
GI PG +G + + + + + L++ A+
Sbjct: 432 LGIGPGPAIGQAYKFLLELRLENG-PMEHDQAVSALKEWWAA 472
>gi|330996014|ref|ZP_08319908.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Paraprevotella xylaniphila YIT 11841]
gi|329574011|gb|EGG55589.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Paraprevotella xylaniphila YIT 11841]
Length = 493
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 76/452 (16%), Positives = 159/452 (35%), Gaps = 56/452 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + ++ + +VGG VRD + QDID+ T + + + + +
Sbjct: 20 QISEVADEQGVECYVVGGYVRDLFLERPSQDIDVVTVGSGIALAKALAGRLGRGARLSVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
++GT ++ R + R + + VV + D RRDFTINAL +
Sbjct: 80 SNFGTAQVKFRGMEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINALAVCLNRE 139
Query: 135 VI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
D G+ D+ +R I+ D +D LR++R RF ID + A
Sbjct: 140 RFGELVDPFDGVWDMEDRLIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-IDEETFEAL 198
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----------Q 239
+ ++ +KI+S ERI E+NK++ P V + G+ IF ++ +
Sbjct: 199 ERNRERIKIVSRERIADELNKIMMTPTPSKGFVELARCGLLPLIFPELAAMEGVEKVKGR 258
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL------------ 287
+ + + + + LR+ L+ K
Sbjct: 259 AHKDNFYHTLEVLDNICRHTDNLWLRWAALLHDIGKPRTKRFDPVAGWTFHNHNFIGSKM 318
Query: 288 -----------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
E ++ + ++ E+ ++ + L
Sbjct: 319 VPDIFRKMKLPMNEKMKYVQKMVELHMRPIVIADEEVTDSAVRRLLFEAGDDIEDLMTLC 378
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++ + L + + P++G++++ +G+PP ++VG
Sbjct: 379 EADITSKNAQRKQRFLDNFKLVRRKLVDLEERDRVRNFQPPVSGEEIMAVFGLPPCREVG 438
Query: 383 NILVHCKQEWINSSFQLSQEDL-HHLLRKLIA 413
++ K ++ + +LR+ +
Sbjct: 439 SLKSAIKDAILDGVVPNEHDAAYEFMLRRAVK 470
>gi|317475446|ref|ZP_07934710.1| poly A polymerase head domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
gi|316908474|gb|EFV30164.1| poly A polymerase head domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
Length = 474
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 75/445 (16%), Positives = 156/445 (35%), Gaps = 55/445 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I ++ + +VGG VRD + +DID+ + +K + +
Sbjct: 20 RISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALAKRLGRGAHLSVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
++GT ++ + R + T VV + D RRDFTINAL +
Sbjct: 80 KNFGTAQLKYHGTEVEFVGARKESYTHDSRKPVVEDGSLEDDQNRRDFTINALAVCLNRQ 139
Query: 135 VI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
D GG+ D+R +TI+ D +D LR++R RF ID D +
Sbjct: 140 RYGELVDPFGGMEDMREKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IDDDTFESL 198
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----------Q 239
+ K+ + I+S ERI E+NK+L + P ++ + G+ + IF ++ +
Sbjct: 199 CRNKERISIISKERIADELNKILLSPVPSKGLIDLDRSGLLQLIFPELVALQGVENRNGR 258
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------ 281
+ + + + + + LR+ L+ K +
Sbjct: 259 AHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPRAGWTFHNHNFIGEKM 318
Query: 282 -----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
+ E ++ + ++ + + + L
Sbjct: 319 IPEIFRRMKLPMNEKMKYVQKLVGLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMTLC 378
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++ + L++ + P++G++++K + +PP ++VG
Sbjct: 379 EADITSKNMERKQRFLNNFQLVRQKLKDLEERDRIRNFQPPVSGEEIMKTFNLPPCRQVG 438
Query: 383 NILVHCKQEWINSSFQLSQEDLHHL 407
+ K ++ E
Sbjct: 439 ALKSAIKDAILDGVIPNDYEAARAF 463
>gi|262183077|ref|ZP_06042498.1| tRNA nucleotidyltransferase [Corynebacterium aurimucosum ATCC
700975]
Length = 477
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 88/451 (19%), Positives = 168/451 (37%), Gaps = 55/451 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
++ + +VGG+VRD+L+ D+D T PD V I + V T I +
Sbjct: 29 LVERFALHDAPLYLVGGSVRDALLGRLGNDLDFTTPARPDVVYSILEEWAETVWDTGIDF 88
Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ---- 132
GT+ + + +ITT RSD R +V++ + D +RRDF +NA+ + +
Sbjct: 89 GTVSAAYKGQQIEITTFRSDSYDGQSRNPEVMYGDTLEGDLVRRDFKVNAMAIELRSDGT 148
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D +GGL+DL R + +D LR+LR RF A E ++ A I
Sbjct: 149 REFHDPMGGLDDLAKRILDTPDAPEISFHDDPLRMLRAARFAAQL-EFDVAQRVRDAMID 207
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------------Q 239
++ ++ ER+ E+NKL+ P I + + GI +F ++ +
Sbjct: 208 MAGEIQRITVERVQVELNKLICGTAPWKGIDLLVDSGIADYVFPEIPALRMAPDEHAQHK 267
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------------I 278
++ L+ + +A + E D +LR+ L+ K
Sbjct: 268 DVYAHSLTVLRQAMEQEEEGPDLILRWAALLHDIGKPDTRDTTDGKVSFHHHEVVGAKLT 327
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIFLAL 335
+K P+ + + + Y+ ++ +L +
Sbjct: 328 RKRLRKLKFPKATTEDIGQLVYLHMRFHGFGDGQWTDSAVRRYVTDAGDLLPRLHKLVRA 387
Query: 336 HYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKKVGNI 384
+ + + + + L G+++++ G+ PG +VG
Sbjct: 388 DCTTRNERKARRLQRTYDQLEERIADIAAKEDLARVRPDLDGNEIMEILGLEPGPEVGKA 447
Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ K+ + L +E LR+ S
Sbjct: 448 WSYLKELRLEEG-PLEREVAIAKLREWWNSR 477
>gi|301336247|ref|ZP_07224449.1| polyA polymerase [Chlamydia muridarum MopnTet14]
Length = 410
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 90/402 (22%), Positives = 161/402 (40%), Gaps = 13/402 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I+ L ++ VGG+VRD L++ ++++DIAT P V IF +
Sbjct: 9 AKKIVQKLRNAGYQAYFVGGSVRDMLLDRPIEEVDIATNASPTIVTTIFPD----TLSIG 64
Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D
Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYADGRHPNRVIFASMKDDAIRRDFTINGMYYDPFE 124
Query: 134 KV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D V G DL + ++ IG R LED LRILR RF A G + +
Sbjct: 125 EKLFDLVEGRADLERKVVRAIGHPKQRFLEDKLRILRAIRFAATLGFSLDPKTEIAIIKE 184
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
A +S ERIW E+ K+L P ++ + + IF +++ L I
Sbjct: 185 APSLPTSVSPERIWQELKKMLRKA-PYESLQLLIKLKVLPIIFPELKASPSGFLRSTIAF 243
Query: 253 EQVFEWKIDSLLRFIVLISWQ-DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
Q + F++ + + ++ ++ + + + L ++ +
Sbjct: 244 AQRIRDPHIPEIAFLLPLFQEVKQEEAIAAFSRLKVSNKELGLLEDWYEALPQFRAKQNN 303
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL----QVLSDIIHWKKPLFPLTG 367
+I + + + + ++ S I + ++
Sbjct: 304 KIFWAHFFASQTSPLLLSLFLSLQRTPHEQELFISRVHHLKTRLASFIERIQTGSPLVSA 363
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D++ GI PG+ +G +L + I +E + LL+
Sbjct: 364 PDLMARGIAPGRLLGELLKEAEALSIEHECS-DKEKILSLLK 404
>gi|294774980|ref|ZP_06740510.1| HD domain protein [Bacteroides vulgatus PC510]
gi|294451189|gb|EFG19659.1| HD domain protein [Bacteroides vulgatus PC510]
Length = 472
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 76/459 (16%), Positives = 164/459 (35%), Gaps = 56/459 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
F++ I ++ + +VGG VRD + +DID+ + + F + +
Sbjct: 7 FNNKIFKLISETADELGLECYVVGGYVRDIFLKRPSKDIDVVVVGSGIEMAQAFGRKLGR 66
Query: 70 --VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT ++ + R + + VV + D RRDFTINA+
Sbjct: 67 GAHVSVFKNFGTAQVKYHDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAM 126
Query: 128 YADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+++D GL+DL+ RTI+ D +D LR++R RF ID
Sbjct: 127 AVCLNKARFGELVDPFNGLDDLKERTIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-ID 185
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----- 238
A + K+ + I+S ERI E+NK+L A P + + G+ IF ++
Sbjct: 186 DTTFEALSRNKERIHIISKERIADELNKILLAPIPSKGFIELDRCGLLPLIFPELVALQG 245
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----- 287
+ + + + + + + LR+ L+ K +
Sbjct: 246 VETRNGRAHKDNFYHTLEVVDNISKHTDNLWLRWATLLHDIGKPRTKRWEPRIGWTFHNH 305
Query: 288 ------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
E ++ + + ++ + +
Sbjct: 306 NFIGEKMVPDLFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDI 365
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGI 375
+ L ++T ++ + L + + P+ G+++++ + +
Sbjct: 366 DDLMMLCEADITSKNEARKQKFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGEEIMRIFDL 425
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRKLIA 413
P +++G++ K ++ + L H+L+K +
Sbjct: 426 QPCREIGSLKSSIKDAILDGIIPNEHDAALEHMLKKAKS 464
>gi|256826444|ref|YP_003150404.1| tRNA adenylyltransferase [Kytococcus sedentarius DSM 20547]
gi|256689837|gb|ACV07639.1| tRNA adenylyltransferase [Kytococcus sedentarius DSM 20547]
Length = 484
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 83/465 (17%), Positives = 159/465 (34%), Gaps = 64/465 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L + + +VGG VRD+ + + D+D+ T PD + ++ +
Sbjct: 22 PLLTEVGERFAAAGYELALVGGPVRDAFLGRTSPDLDLTTDARPDDIEKVLAGWADATWD 81
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD- 130
++GTI + ++TT RSD+ R +V F D D +RRDFT+NA+
Sbjct: 82 LGRAFGTIGARKGETTLEVTTYRSDIYDRASRKPEVCFGHDLADDLVRRDFTVNAMALRL 141
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+D GGL L+ + +D LR++R RF A G + A
Sbjct: 142 PDLGFVDPHGGLAALQAGELDTPTAPEESFADDPLRMMRACRFAAQLGLVP-SERVMDAM 200
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
L+I+S+ERI E KL+ + +P + + G+ +++ ++ + L++
Sbjct: 201 KDMAPSLEIISAERIRDEFTKLILSDHPRAGLEVFVHTGLAEQVVPELPALQLERDEH-H 259
Query: 251 EAEQVFEWKI-----------------------DSLLRFIVLISWQDKKSILSMAKK--- 284
+ V+E + D +LR L+ K +
Sbjct: 260 RHKDVYEHSLIVLEQAMDLEGPREGAAEEVPHGDLVLRLAALLHDIGKPATRRFLPGGRV 319
Query: 285 -------------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGD 322
++ ++ + E Y+
Sbjct: 320 SFHHHEIVGAKLARKRLRALRYDKDTIRDVVRLIELHLRFHGYGDGEWTDSAVRRYVTDA 379
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK 372
++++L + + + Q + L G + +
Sbjct: 380 GPLLSRLHLLTRADCTTRNQRKARRLAQTYDALEERIDRIQAEEELAAVRPDLNGHQISE 439
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
GIPPG +G H Q +++ + E LR+ A+ +
Sbjct: 440 VLGIPPGPVLGEAYDHLLQFRLDAG-PVGPEAAAEELRRWWAARE 483
>gi|329957804|ref|ZP_08298279.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacteroides clarus YIT 12056]
gi|328522681|gb|EGF49790.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacteroides clarus YIT 12056]
Length = 479
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 74/446 (16%), Positives = 155/446 (34%), Gaps = 55/446 (12%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPT 73
I ++ + +VGG VRD + +DID+ + +K + +
Sbjct: 24 KRISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALAKRLGRGAHLSV 83
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
++GT ++ + R + T +V + D RRDFTINAL
Sbjct: 84 FKNFGTAQLKYHGTEVEFVGARKESYTHDSRKPIVEDGSLEDDQNRRDFTINALAVCLNR 143
Query: 134 KVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ D GG+ D+R +TI+ D +D LR++R RF ID D +
Sbjct: 144 ERYGELADPFGGMADMREKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IDDDTFES 202
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------- 238
+ K+ + I+S ERI E+NK+L + P + + G+ + IF ++
Sbjct: 203 LCRNKERISIISRERIADELNKILLSPVPSKGFIDLDRSGLLQLIFPELVALQGVETRNG 262
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------------- 281
+ + + + + + + LR+ L+ K +
Sbjct: 263 RAHKDNFYHTLEVLDNISKKTGNLWLRWAALLHDIAKPATKRWEPRAGWTFHNHNFIGEK 322
Query: 282 ------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335
+ E ++ + ++ + + + L
Sbjct: 323 MIPDIFRRMKLPMNEKMKYVQKLVGLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMTL 382
Query: 336 HYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKV 381
++T ++ + L++ + P++G++++K + +PP ++V
Sbjct: 383 CEADITSKNMERKQRFLNNFQLVRQKLKDLEERDRIRNFQPPVSGEEIMKTFNLPPCRQV 442
Query: 382 GNILVHCKQEWINSSFQLSQEDLHHL 407
G + K ++ E
Sbjct: 443 GALKSAIKDAILDGIIPNEYEAARAF 468
>gi|167462324|ref|ZP_02327413.1| tRNA CCA-pyrophosphorylase [Paenibacillus larvae subsp. larvae
BRL-230010]
gi|322381850|ref|ZP_08055804.1| tRNA CCA-pyrophosphorylase-like protein [Paenibacillus larvae
subsp. larvae B-3650]
gi|321154238|gb|EFX46560.1| tRNA CCA-pyrophosphorylase-like protein [Paenibacillus larvae
subsp. larvae B-3650]
Length = 455
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 91/438 (20%), Positives = 167/438 (38%), Gaps = 49/438 (11%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
++ L++ ++ VGG VRD L+ V+D DIAT LP++VM F KVIPT + +
Sbjct: 13 VIQQLHRHGYEAYFVGGCVRDELLGRPVKDFDIATAALPEQVMGCFE----KVIPTGLQH 68
Query: 78 GTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
GT+ I+ F++TT R + R +V + D D RRDFT+NA+ G++
Sbjct: 69 GTVTILAEGFAFEVTTFRKESEYEQFRRPKEVCYITDLNEDLRRRDFTMNAMAIGLDGRI 128
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
ID GG DL ++ +G R ED LR+LR RF + Y I+ A + A
Sbjct: 129 IDPFGGQEDLAKGLLRCVGQPDERYREDALRMLRAIRFASTYA-LRIEECSWQALLSAAP 187
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
L+ ++ ER+ +E+ +++ P +A+ + G+++ + +SL+ L + +
Sbjct: 188 LLRHIAMERVRTELERMVAGPAPEHAVDLLLKSGLWEHFKDPLH-VSLNMLGEDPAKMLL 246
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
L+ + + + A + + EI
Sbjct: 247 PVLDELPDLQDRWTLLFLLAGAKAKEASRAMRSLTFSNQDLFTVKNILASAETLANEIVS 306
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI--------------------------- 348
+ KL A+ + ++ I
Sbjct: 307 ERKGSMESCTSEKLWKLTAVRQSGISLFSLARIVTAVYPRFYAKPGRKTESLQAGTPFYA 366
Query: 349 -------------LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWIN 394
++ L I + +TG D++K + G + +L ++
Sbjct: 367 LLHILGEDIWKNGIRWLEQIPCKEVKALAITGRDLMKHFDQKGGPWLKTLLQCLLEKVAL 426
Query: 395 SSFQLSQEDLHHLLRKLI 412
+ +E L + +
Sbjct: 427 NVLPNDREKLLEEAERYM 444
>gi|271970534|ref|YP_003344730.1| hypothetical protein Sros_9369 [Streptosporangium roseum DSM 43021]
gi|270513709|gb|ACZ91987.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 479
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 81/454 (17%), Positives = 160/454 (35%), Gaps = 53/454 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ L + + +VGG+VRD L+ D+D+ T P+ V+ + +
Sbjct: 22 APVADELGELFSARGYQIALVGGSVRDVLLGRIGNDLDLTTDARPETVLELIRDWADSIW 81
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ + +ITT RS+ R VV+ + D RRDF +NA+
Sbjct: 82 TIGIDFGTVGVRKGNWLLEITTYRSESYDPKSRKPDVVYGDTLEGDLARRDFAVNAMALR 141
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ +D GGL+DL + ++ +D LR+LR RF + +D A
Sbjct: 142 LPSREFVDPHGGLDDLHAKVLRTPALPERSFDDDPLRMLRAARFASQLAF-TVDPAAFAA 200
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----- 244
+ ++I+S+ERI E+NKL+ +P + + + G+ + ++ ++ L+
Sbjct: 201 MTAMAERIEIVSAERIRDELNKLICGDHPREGLKVLVDSGLASHVLPELPKLRLEIDEHH 260
Query: 245 --------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281
L + +A + E D +LR+ L+ K
Sbjct: 261 RHKDVYEHTLIVLEQAIDLEENGPDRILRWAALLHDVGKPKTRRHEPGGRVSFHHHEMVG 320
Query: 282 -------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
+ P+++ + + E Y+ ++ +L
Sbjct: 321 AQLAKKRMSELKFPKDVVADVSRLVELHLRFHGYGTGEWTDSAVRRYVRDGGPLLERLHK 380
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWK----------KPLFPLTGDDVVK-YGIPPGKK 380
+ + + + K L G+++ G+PPG
Sbjct: 381 LTRADCTTRNKRKAQALSRTYDQLEERIARLADEEELGKIRPELDGNEIQALLGVPPGPV 440
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+G ++ + +E LR+
Sbjct: 441 IGRAYKFLLDMRLDKGV-IGKEAATEALRQWAHE 473
>gi|298479673|ref|ZP_06997873.1| polyA polymerase family protein [Bacteroides sp. D22]
gi|298274063|gb|EFI15624.1| polyA polymerase family protein [Bacteroides sp. D22]
Length = 477
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 74/453 (16%), Positives = 158/453 (34%), Gaps = 59/453 (13%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + + +VGG VRD + +DID+ + K + +
Sbjct: 20 QIAETADALGMECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133
++GT ++ R + R + +V + D RRDFTINAL
Sbjct: 80 KNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKA 139
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GG+ D++ +TI+ D +D LR++R RF G ID D +
Sbjct: 140 RFGELVDPFGGMEDMKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLGFY-IDDDTFESL 198
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----------Q 239
+ K+ ++I+S ERI E+NK++ + P + + G+ IF + +
Sbjct: 199 CRNKERIEIISRERIADELNKIILSPIPSKGFIDLERSGLLPLIFPEFAVLQGVETRNGR 258
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------ 281
+ + + + + + LR+ L+ K
Sbjct: 259 SHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPVTKRWEPKAGWTFHNHNFIGEKM 318
Query: 282 -----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
K E ++ + + ++ + + + L
Sbjct: 319 IPHIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMMLC 378
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++ + L++ + P++G+++++ +G+ P ++VG
Sbjct: 379 EADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQPPVSGEEIMEIFGLEPCREVG 438
Query: 383 NILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
+ K ++ E +K+
Sbjct: 439 VLKSAIKDAILDGVIPNEYEAAHAFMLERAKKM 471
>gi|253570547|ref|ZP_04847955.1| tRNA nucleotidyltransferase [Bacteroides sp. 1_1_6]
gi|251839496|gb|EES67579.1| tRNA nucleotidyltransferase [Bacteroides sp. 1_1_6]
Length = 477
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 76/444 (17%), Positives = 162/444 (36%), Gaps = 55/444 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTSI 75
I + + +VGG VRD + +DID+ + K + +
Sbjct: 21 IAETADALGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVFK 80
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-- 133
++GT ++ + + R + +V + D RRDFTINA+
Sbjct: 81 NFGTAQVKYKGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINAMAVCLNKAR 140
Query: 134 --KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+++D GG+ D++ +TI+ D +D LR++R RF ID D +
Sbjct: 141 FGELVDPFGGMADMKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IDDDTFESLC 199
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------- 241
+ K ++I+S ERI E+NK++ + P V + G+ IF ++ +
Sbjct: 200 RNKDRIEIISRERIADELNKIILSPIPSKGFVELERSGLLPLIFPELAALQGVETRNGRS 259
Query: 242 -SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----AKKFSLPREI-RYFL 295
+ + + + + + LR+ L+ K + F I +
Sbjct: 260 HKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPKAGWTFHNHNFIGEKMI 319
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AKLKIFLALHY 337
+ F + ++K+ L+ ++I + + L
Sbjct: 320 PNIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMTLCE 379
Query: 338 NNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVGN 383
++T ++ + L++ + P++G+++++ +G+ P ++VG
Sbjct: 380 ADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQPPVSGEEIMETFGLQPCREVGA 439
Query: 384 ILVHCKQEWINSSFQLSQEDLHHL 407
+ K ++ E H
Sbjct: 440 LKSAIKDAILDGVIPNEYEAAHAF 463
>gi|256398126|ref|YP_003119690.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Catenulispora acidiphila DSM 44928]
gi|256364352|gb|ACU77849.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Catenulispora acidiphila DSM 44928]
Length = 491
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 90/459 (19%), Positives = 166/459 (36%), Gaps = 57/459 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L + +VGG VRD+L+ +D+D T P++V+++ V
Sbjct: 29 PVLGELAGRFAAAGHSLALVGGPVRDALLGRLSEDLDFTTDARPEQVLKLMQGWAEAVWD 88
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA-- 129
I++GT+ +ITT RS+ + R +V + + D RRDFT+NA+
Sbjct: 89 VGIAFGTVGAQKAGAKLEITTFRSEAYDRESRKPEVAYGDSIEDDLFRRDFTVNAMAVRL 148
Query: 130 ---DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ + +D GGL DL ++ G +D LR++R RF A G ++ +
Sbjct: 149 SADPEDFEFVDPYGGLADLGAGVLRTPGTPEMSFSDDPLRMMRAARFAAQLGF-DVAPEV 207
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-- 244
A + + L I+S+ER+ E++KLL A NP + + + G+ + ++ ++ L+
Sbjct: 208 RTAMTEMAERLTIVSAERVQVELSKLLLAPNPRAGLALLVDTGLADIVVPELPKLRLEID 267
Query: 245 -----------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDK------------------ 275
L+ + +A + D +LR L+ K
Sbjct: 268 EHHRHKDVYEHTLTVLEQAIDLETDGPDLILRLAALLHDIGKPKTRRFEPGGGVSFHHHE 327
Query: 276 ----KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAK 328
S +K +EI + E Y+ ++ +
Sbjct: 328 VVGAHMTASRLRKLKYSKEIIDDTSRLVELHLRFHGYGEAEWTDSAVRRYVRDAGPLLER 387
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + D+ L G+++++ I P
Sbjct: 388 LHKLTRSDCTTRNRRRALMLEHAYDDLERRIAELREREELDSIRPDLDGNEIMQILAIKP 447
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G +VG H + ++ L E LR A +
Sbjct: 448 GPEVGAAYKHLLELRMDRG-PLDHETAETELRSWWAERE 485
>gi|167764732|ref|ZP_02436853.1| hypothetical protein BACSTE_03122 [Bacteroides stercoris ATCC
43183]
gi|167697401|gb|EDS13980.1| hypothetical protein BACSTE_03122 [Bacteroides stercoris ATCC
43183]
Length = 474
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 75/452 (16%), Positives = 158/452 (34%), Gaps = 55/452 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
F DS I ++ + +VGG VRD + +DID+ + ++ +
Sbjct: 13 FSDSIFKRISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALARRLGR 72
Query: 70 --VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT ++ + R + T +V + D RRDFTINAL
Sbjct: 73 GAHLSVFKNFGTAQLKYHGTEVEFVGARKESYTHDSRKPIVEDGSLEDDQNRRDFTINAL 132
Query: 128 YADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+ D GG+ D++ +TI+ D +D LR++R RF ID
Sbjct: 133 AVCLNSQRYGELVDPFGGMADMKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-ID 191
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----- 238
D + + K+ + I+S ERI E+NK+L + P + + G+ + IF ++
Sbjct: 192 DDTFESLCRNKERISIISKERIADELNKILLSPVPSKGFIDLDRSGLLQLIFPELVALQG 251
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------- 281
+ + + + + + + LR+ L+ K +
Sbjct: 252 VETRNGRAHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPRAGWTFHNH 311
Query: 282 ------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
+ E ++ + ++ + +
Sbjct: 312 NFIGEKMIPDIFRRMKLPMNEKMKYVQKLVGLHMRPIVIADDVVTDSAVRRLLFEAGDDI 371
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGI 375
+ L ++T ++ + L++ + P++G++++K + +
Sbjct: 372 DDLMTLCEADITSKNMERKQRFLNNFQLVRQKLKDLEERDRIRNFQPPVSGEEIMKTFNL 431
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
PP ++VG + K ++ E
Sbjct: 432 PPCQQVGALKSAIKDAILDGVIPNEYEAARAF 463
>gi|150004215|ref|YP_001298959.1| putative polyA polymerase [Bacteroides vulgatus ATCC 8482]
gi|149932639|gb|ABR39337.1| putative polyA polymerase [Bacteroides vulgatus ATCC 8482]
Length = 472
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 77/459 (16%), Positives = 164/459 (35%), Gaps = 56/459 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
F++ I ++ + +VGG VRD + +DID+ + + F + +
Sbjct: 7 FNNKIFKLISETADELGLECYVVGGYVRDIFLKRPSKDIDVVVVGSGIEMAQAFGRKLGR 66
Query: 70 --VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT +I + R + + VV + D RRDFTINA+
Sbjct: 67 GARVSVFKNFGTAQIKYHDTEVEFVGARKESYSHDSRKPVVENGTLEDDQNRRDFTINAM 126
Query: 128 YADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+++D GL+DL+ RTI+ D +D LR++R RF ID
Sbjct: 127 AVCLNKARFGELVDPFNGLDDLKERTIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-ID 185
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----- 238
A + K+ + I+S ERI E+NK+L A P + + G+ IF ++
Sbjct: 186 DTTFEALSRNKERIHIISKERIADELNKILLAPIPSKGFIELDRCGLLPLIFPELVALQG 245
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----- 287
+ + + + + + + LR+ L+ K +
Sbjct: 246 VETRNGRAHKDNFYHTLEVVDNISKHTDNLWLRWATLLHDIGKPRTKRWEPRIGWTFHNH 305
Query: 288 ------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
E ++ + + ++ + +
Sbjct: 306 NFIGEKMVPDLFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDI 365
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGI 375
+ L ++T ++ + L + + P+ G+++++ + +
Sbjct: 366 DDLMMLCEADITSKNEARKQKFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGEEIMRIFDL 425
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRKLIA 413
P +++G++ K ++ + L H+L+K +
Sbjct: 426 QPCREIGSLKSSIKDAILDGIIPNEHDAALEHMLKKAKS 464
>gi|220914656|ref|YP_002489965.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Arthrobacter chlorophenolicus A6]
gi|219861534|gb|ACL41876.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Arthrobacter chlorophenolicus A6]
Length = 502
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 85/466 (18%), Positives = 153/466 (32%), Gaps = 63/466 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ D ++ + + +VGG VRD + + D+D T PD+ + + K
Sbjct: 14 DFQVDPVVLELGQRFVDAGHELSLVGGPVRDLFLGRTSPDLDFTTDATPDQTVALIKKWA 73
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
++GTI + +ITT R D R V F D LRRDFTINA
Sbjct: 74 DNFWEIGRAFGTIGMRKAGFQIEITTYRAEAYDPDSRKPVVAFGSSLTDDLLRRDFTINA 133
Query: 127 LYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ +++D GG+ DL + G +D LR++R RF + G D
Sbjct: 134 MALKLPTMELVDPFGGVRDLHASVLATPGSPEASFSDDPLRMMRAARFASQLGVSVHDDV 193
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ + + I+S+ERI E+ KL+ P + + + G+ + + +V + L+
Sbjct: 194 RKAMTG-MAERITIISAERIRDELVKLVCGARPRVGVDLLVDTGLAEFVLPEVSALRLES 252
Query: 246 ----------LSQVIEAEQVFEWK---------IDSLLRFIVLISWQDKKSILSM----- 281
+ EQ + D +LRF L+ K +
Sbjct: 253 DEHHRHKDVYQHSLQVLEQAAALETDADGPVPGPDFVLRFAALMHDVGKPATRRFEQGGA 312
Query: 282 -----------------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYL 319
K + + + S +++
Sbjct: 313 VSFRHHDMVGAKLTTKRMKTLRFDNDTIKSVARLVELHMRFYGYGDAGWSDSAVRRYVTD 372
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFI----------LQVLSDIIHWKKPLFPLTGDD 369
G + + +L + + + L + + L G
Sbjct: 373 AGPQ--LERLHRLTRSDVTTRNQRKADRLSFAYDDLEERIAALREQESLEAVRPDLDGAQ 430
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++ G+ PG VG E + L+ +D L + A
Sbjct: 431 IMSLLGLKPGPVVGRAYKFLLNERMEHG-PLAADDAEARLLRWWAE 475
>gi|320354996|ref|YP_004196335.1| polunucleotide adenylyltransferase region [Desulfobulbus
propionicus DSM 2032]
gi|320123498|gb|ADW19044.1| Polynucleotide adenylyltransferase region [Desulfobulbus
propionicus DSM 2032]
Length = 901
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 68/408 (16%), Positives = 135/408 (33%), Gaps = 14/408 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L I + + GG VRD L+++ DIDI R + ++ R+ V+
Sbjct: 485 LREIGETAAVLGCNAYVAGGFVRDLLLHVRNTDIDIVIEGDGIRFAKTLAEQRHGVVHPH 544
Query: 75 ISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+GT +I + D+ T R + V K D RRDFTINA+
Sbjct: 545 EKFGTATVIFPDQSRVDVATARLEYYEHPAALPTVEHSSIKLDLYRRDFTINAMAIHLNP 604
Query: 134 KVIDYVGGLNDLRNR--TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL-VAS 190
+ + + +N + + +ED RI R RF + +
Sbjct: 605 ERFGTLVDYFNCQNDLKERRIQVLHNLSFVEDPTRIFRAIRFEGRLDFTITRHAEKLIKN 664
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---------I 241
+ + R + E+ +L +P+ A+ M +F ++ D++
Sbjct: 665 TVQMNLFEKVEEPRFFHELKLILSEDDPIPALRRMAQFKLFPFLWPDLRPNLKVDRRFLH 724
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+L Q +Q I ++ + L++ + +
Sbjct: 725 TLTQANQAISWFKLLYLPDRVETWMVYLLAIMSRSRTKELISFCHRFDLPPKQRKKLIQQ 784
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + ++ K+ F + + L Y + V + +K
Sbjct: 785 KTDAERIAQEMQKRPFLKPSETYWLLGELDIEGLLYLMTIARKRYIQQAVSLYVTTLRKV 844
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ + GD++ G PG + I H + ++ S + +R
Sbjct: 845 VPLVGGDELKTMGYIPGPQFRAIHNHLIEMQLDGEI-TSHDQALAFIR 891
>gi|258655493|ref|YP_003204649.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Nakamurella multipartita DSM 44233]
gi|258558718|gb|ACV81660.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Nakamurella multipartita DSM 44233]
Length = 464
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 78/454 (17%), Positives = 153/454 (33%), Gaps = 53/454 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ ++ + +VGG+VRD+L+ D+D T P++V+R+ +
Sbjct: 8 APVADELGTVFAAAGHQLFLVGGSVRDALLGRLEDDLDFTTDARPEQVLRLVKGWAESIW 67
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ + +ITT RSD + R +V F + D LRRDF +NA+
Sbjct: 68 QTGIEFGTVGLAKAGFRVEITTFRSDLYDGETRNPEVTFGDTLEGDLLRRDFAVNAMAVS 127
Query: 131 QQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
G D GL L R + G +D LR+LR RF + G
Sbjct: 128 VPGHTFTDPFHGLTQLAERVLDTPGTPEQSFRDDPLRMLRAARFVSQLGFHPAPRVVAAM 187
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ + ++ ER+ +E+ KL+ ++P + + + G+ I ++ + L++ +
Sbjct: 188 T-AMAGEIDRITPERVGAELVKLIMGEHPREGLRLLTDTGLADRILPELPALRLERDEHL 246
Query: 250 IEAEQVFEW-------------KIDSLLRFIVLISWQDKKSILSM--------------- 281
+ D LR L+ K +
Sbjct: 247 QHKDVYEHTLTVLDQAIAQEADGPDLTLRLAALMHDIGKPATRRFEPGAGVSFHHHEVVG 306
Query: 282 -------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
+ +P+ + + + Y+ ++ +L
Sbjct: 307 AKLARKRLRALRMPKALIDDVAMLTFLHLRFHGYGTGAWTDSAVRRYVTDAGELLPRLHK 366
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + + + L G+ +++ G+PPG
Sbjct: 367 LVRADCTTRNPGRRAALQRSYDSLEERIAQIAAAEDLARVRPDLDGNAIMELLGVPPGPI 426
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
VG + K+ + L +E L +
Sbjct: 427 VGKAWAYLKELRLERG-PLDRETAEAALMQWARD 459
>gi|302036512|ref|YP_003796834.1| hypothetical protein NIDE1150 [Candidatus Nitrospira defluvii]
gi|300604576|emb|CBK40908.1| conserved protein of unknown function, putative Phosphoesterase and
Polynucleotide adenylyltransferase [Candidatus
Nitrospira defluvii]
Length = 891
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 65/397 (16%), Positives = 126/397 (31%), Gaps = 12/397 (3%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82
+ + +VGG VRD L+ + D+D R +K R + +GT +
Sbjct: 485 ERLGYSAYVVGGFVRDLLLGIDNLDVDFVVEGDGIAFARALAKERAGRVKVHERFGTAVV 544
Query: 83 IC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141
+ D+ T R++ V K D RRDFTIN L + +
Sbjct: 545 LLPDGFKVDVATARTEYYEYPTALPTVEQSSIKKDLYRRDFTINTLAVRLNPRAFGQLID 604
Query: 142 LNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLK 198
+ + + +ED R+ R RF + + ++ L+ +
Sbjct: 605 FYGGQRDLKERLIRVLHSLSFVEDPTRVFRAIRFELRFDFHLSKETLALIKGAVKMELFH 664
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
LS +R+ E+ L + P +A+ + + + + I + + ++ E E EW
Sbjct: 665 RLSGQRLLDELRYLFSERTPRHAVRRLADLDLLRFIHPTLTWSNRLD-RRLSEVEAALEW 723
Query: 259 -KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
K+ L R I +M + R+ + +
Sbjct: 724 YKLSCLDRHISGWLVYAMALTEAMPDQAVHEMLERFPFTEAERGAITAARFLTQPVCRAL 783
Query: 318 YLYGDKVMIAKLKIFLALHYNNL-----THQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + L L + + + ++ LTG +
Sbjct: 784 SRRAPLRPSDTVALLAGLADETLVFLLAKNASASAKRHLSLYLTTYRDVKPALTGKSLQA 843
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G PG IL ++ + E+ L++
Sbjct: 844 LGFRPGPLYRTILERLTTARLDGDVKTEAEE-RELVK 879
>gi|293371097|ref|ZP_06617634.1| HD domain protein [Bacteroides ovatus SD CMC 3f]
gi|292633755|gb|EFF52307.1| HD domain protein [Bacteroides ovatus SD CMC 3f]
Length = 474
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 75/453 (16%), Positives = 159/453 (35%), Gaps = 59/453 (13%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + + +VGG VRD + +DID+ + K + +
Sbjct: 17 QIAETADTLGMECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKQLGRGAHVSVF 76
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133
++GT ++ R + R + +V + D RRDFTINAL
Sbjct: 77 KNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKA 136
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GGL D++ +TI+ D +D LR++R RF G ID D +
Sbjct: 137 RFGELVDPFGGLEDMKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLGFY-IDDDTFESL 195
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241
+ K+ ++I+S ERI E+NK++ + P + + G+ IF + +
Sbjct: 196 CRNKERIEIISRERIADELNKIILSPIPSKGFIDLERSGLLSLIFPEFAALQGVETRNGR 255
Query: 242 --SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------ 281
+ + + + + + LR+ L+ K +
Sbjct: 256 SHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPKAGWTFHNHNFIGEKM 315
Query: 282 -----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
K E ++ + + ++ + + + L
Sbjct: 316 IPHIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMMLC 375
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++ + L++ + P++G+++++ +G+ P ++VG
Sbjct: 376 EADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQPPVSGEEIMEIFGLEPCREVG 435
Query: 383 NILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
+ K ++ E +K+
Sbjct: 436 VLKSAIKDAILDGVIPNEYEAAHAFMLERAKKM 468
>gi|54027630|ref|YP_121872.1| putative tRNA nucleotidyltransferase [Nocardia farcinica IFM 10152]
gi|54019138|dbj|BAD60508.1| putative tRNA nucleotidyltransferase [Nocardia farcinica IFM 10152]
Length = 485
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 82/456 (17%), Positives = 170/456 (37%), Gaps = 56/456 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73
L + L + +VGG+VRD+++ D+D T P++V+ I V T
Sbjct: 31 LTPLGGLFAARGHELYLVGGSVRDAVLGRLGTDLDFTTDARPEQVLEIMRGWADHVWDTG 90
Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ- 131
+++GT+ + +ITT RSD R +V F + D +RRDFT+NA+
Sbjct: 91 GLAFGTVSAAKAGQQLEITTFRSDTYDRVSRNPEVTFGDTLEGDLVRRDFTVNAMAVRIA 150
Query: 132 ---QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ +D +GG++ L + +D LR+LR RF + G +
Sbjct: 151 ADGSLEFVDPLGGMDALLAGVLDTPASPEDSFDDDPLRMLRAARFVSQLGF-ELAPRVRA 209
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD---- 244
A + + + +++ER+ E++KL+ +P++ I M G+ + + +V + L+
Sbjct: 210 AIGRMAEQIDRITAERVRVELDKLIAGDHPIDGIDIMCETGLAQRVLPEVPAMKLEIDEH 269
Query: 245 ---------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK------------------- 276
L+ + +A + + D +LR+ L+ K
Sbjct: 270 HQHKDVYRHSLTVLEQAIDLEDGDPDLVLRWAALLHDIGKPDTKRNEPGGGVSFHHHEVV 329
Query: 277 ---SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLK 330
+ + P++ + + + Y+ ++ +L
Sbjct: 330 GAKMVRKRMRALKYPKQFTEDVARLVFLHLRFHGYGKGQWTDSAVRRYVTDAGDLLPRLH 389
Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGK 379
+ + + ++ K L G+ +++ G+PPG
Sbjct: 390 KLVRADCTTRNKRRASALQATYDELEERIARLQQEEDLAKVRPDLDGNAIMELLGLPPGP 449
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+VG + K+ ++ +E L+ + S
Sbjct: 450 EVGRAWRYLKELRLDRGPLTREEAEAALVEWWKSQS 485
>gi|160882737|ref|ZP_02063740.1| hypothetical protein BACOVA_00695 [Bacteroides ovatus ATCC 8483]
gi|299148031|ref|ZP_07041094.1| polyA polymerase family protein [Bacteroides sp. 3_1_23]
gi|156111907|gb|EDO13652.1| hypothetical protein BACOVA_00695 [Bacteroides ovatus ATCC 8483]
gi|298514214|gb|EFI38100.1| polyA polymerase family protein [Bacteroides sp. 3_1_23]
Length = 477
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 75/453 (16%), Positives = 159/453 (35%), Gaps = 59/453 (13%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + + +VGG VRD + +DID+ + K + +
Sbjct: 20 QIAETADTLGMECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKQLGRGAHVSVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133
++GT ++ R + R + +V + D RRDFTINAL
Sbjct: 80 KNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKA 139
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GGL D++ +TI+ D +D LR++R RF G ID D +
Sbjct: 140 RFGELVDPFGGLEDMKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLGFY-IDDDTFESL 198
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241
+ K+ ++I+S ERI E+NK++ + P + + G+ IF + +
Sbjct: 199 CRNKERIEIISRERIADELNKIILSPIPSKGFIDLERSGLLPLIFPEFAALQGVETRNGR 258
Query: 242 --SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------ 281
+ + + + + + LR+ L+ K +
Sbjct: 259 SHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPKAGWTFHNHNFIGEKM 318
Query: 282 -----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
K E ++ + + ++ + + + L
Sbjct: 319 IPHIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMMLC 378
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++ + L++ + P++G+++++ +G+ P ++VG
Sbjct: 379 EADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQPPVSGEEIMEIFGLEPCREVG 438
Query: 383 NILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
+ K ++ E +K+
Sbjct: 439 VLKSAIKDAILDGVIPNEYEAAHAFMLERAKKM 471
>gi|265756837|ref|ZP_06090825.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|263233623|gb|EEZ19243.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 500
Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats.
Identities = 77/459 (16%), Positives = 164/459 (35%), Gaps = 56/459 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
F++ I ++ + +VGG VRD + +DID+ + + F K +
Sbjct: 35 FNNKIFKLISETADELGVECYVVGGYVRDIFLARPSKDIDVVVVGSGIEMAQAFGKKLGR 94
Query: 70 --VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT ++ + R + + VV + D RRDFTINA+
Sbjct: 95 GAHVSVFKNFGTAQVKYHDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAM 154
Query: 128 YADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+++D GL+DL+ RTI+ D +D LR++R RF ID
Sbjct: 155 AVCLNKARFGELVDPFNGLDDLKERTIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-ID 213
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----- 238
A + K+ + I+S ERI E+NK+L A P + + G+ IF ++
Sbjct: 214 DTTFEALSRNKERIHIISKERIADELNKILLAPIPSKGFIELDRCGLLPLIFPELVALQG 273
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----- 287
+ + + + + + + LR+ L+ K +
Sbjct: 274 VETRNGRAHKDNFYHTLEVVDNISKHTDNLWLRWATLLHDIGKPRTKRWEPRIGWTFHNH 333
Query: 288 ------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
E ++ + + ++ + +
Sbjct: 334 NFIGEKMIPDLFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDI 393
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGI 375
+ L ++T ++ + L + + P+ G+++++ + +
Sbjct: 394 DDLMMLCEADITSKNEARKQKFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGEEIMRIFDL 453
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRKLIA 413
P +++G++ K ++ + L H+L+K +
Sbjct: 454 QPCREIGSLKSSIKDAILDGIIPNEHDAALEHMLKKAKS 492
>gi|260579544|ref|ZP_05847415.1| polyA polymerase [Corynebacterium jeikeium ATCC 43734]
gi|258602315|gb|EEW15621.1| polyA polymerase [Corynebacterium jeikeium ATCC 43734]
Length = 541
Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats.
Identities = 86/483 (17%), Positives = 162/483 (33%), Gaps = 80/483 (16%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D DL+ + +VGG+VRD+L+ D+D T P ++ I + V
Sbjct: 56 DRDLLPLTQAFQDAGHSLYLVGGSVRDALLGRLSHDLDFTTDARPQAIVDIVTPLAETVW 115
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYA- 129
T I YGT+ + + + +ITT R+D R +V F D +RRDF NA+
Sbjct: 116 DTGIEYGTVSALVKGQILEITTFRADQYDGQSRNPEVSFGDSLDGDLIRRDFRANAIALE 175
Query: 130 ---DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
D ++ D +GGL DL+ + +D LR+LR RF + E +
Sbjct: 176 LSPDGNHQLRDPLGGLEDLQAGVLDTPDSPEISFNDDPLRMLRACRFVSQL-EFGVTKRV 234
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ- 245
A + + ++ ER+ E+NKL+ P + M G+ + ++ + L Q
Sbjct: 235 KEAMAAMSEQISRITVERVAVELNKLMLGAAPWVGLDLMVETGLADHVLPELPALKLTQD 294
Query: 246 ---------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS------------- 277
L + E + LR L+ K
Sbjct: 295 EHRQHKDVYWHSLKVLRNAVNLEAERGLEPSLELRMAALLHDIGKPDTRAFTESGAVTFH 354
Query: 278 ---------ILSMAKKFSLPREIRYFLISFFNCNFNQK---------------------- 306
+K ++ + +
Sbjct: 355 QHEVVGARITRRRLRKLKYSKQHVQDIGQLVFLHMRFHGYADTQGKGQNQDARRGAGEKD 414
Query: 307 ----TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN--------LTHQDTCFILQVLSD 354
T + +++ G + + L + N T+ + ++ L +
Sbjct: 415 NNESTWTDSAVRRYVNDAGKLLPLLHLLVRADCTTRNQRKAQRLQRTYDNLEKRIEQLQE 474
Query: 355 IIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
L G+++++ + PG VG + K+ ++ + +ED L++
Sbjct: 475 QEDLAAVRPDLDGNEIMQILDLKPGPDVGKAWAYLKELRLDRG-PMEREDAIAALKQWWD 533
Query: 414 SSQ 416
+
Sbjct: 534 EQK 536
>gi|311897290|dbj|BAJ29698.1| putative tRNA nucleotidyltransferase [Kitasatospora setae KM-6054]
Length = 481
Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats.
Identities = 82/459 (17%), Positives = 162/459 (35%), Gaps = 59/459 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I + + +VGG+VRD+L+ D+D T P +++++ V
Sbjct: 21 SPVADEIARRFQEAGHRLSLVGGSVRDALLGRLGNDLDFTTDARPQQILKLVKGWADAVW 80
Query: 72 PTSISYGTIKIICR----KKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINA 126
I++GT+ +ITT RS+ R +V + + D +RRDFT+NA
Sbjct: 81 DVGIAFGTVGARKDTPEGSFLIEITTYRSEAYDRSSRKPEVSYGDSIEQDLVRRDFTVNA 140
Query: 127 LYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ D G+ +D GL+DL R ++ +D LR++R RF A + +
Sbjct: 141 MAVDLPGRGFVDPHRGLDDLEARVLRTPATPEESFSDDPLRMMRAARFAAQLDF-DPAPE 199
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ A + I+S+ER+ +E+NKLL A++P+ + + + G+ + ++ + L+
Sbjct: 200 VVAAMTAMADRIGIVSAERVQAELNKLLLAEHPVKGLRLLVDTGLADHVLPELPALRLES 259
Query: 246 LSQVIEAEQVFEWK--------------IDSLLRFIVLISWQDKK--------------- 276
+ V+E D +LR L+ K
Sbjct: 260 DEH-HRHKDVYEHSLTVLEQAIALETDGPDLVLRLAALLHDIGKPRTRRFESDGRVSFHH 318
Query: 277 -------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
++ E+ + + E Y+ ++
Sbjct: 319 HEVVGAKMTRKRMRELKYSNELVNEVSRLVELHLRFHGYGGGEWTDSAVRRYVADAGPLL 378
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK-YGI 375
++L + + + + L G+ +++ G+
Sbjct: 379 SRLHKLTRSDCTTRNKRKAAALARTYDSLEERITALQAQEELDAIRPALDGNRIMELLGL 438
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
PG +VG H + + + + LR A
Sbjct: 439 RPGPEVGRAYKHLLELRLEHG-PMEPAEAEAALRAWWAE 476
>gi|323344432|ref|ZP_08084657.1| polyA polymerase family protein [Prevotella oralis ATCC 33269]
gi|323094559|gb|EFZ37135.1| polyA polymerase family protein [Prevotella oralis ATCC 33269]
Length = 476
Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats.
Identities = 79/452 (17%), Positives = 154/452 (34%), Gaps = 55/452 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV--IPTS 74
I + + +VGG VRD + DID+ +V K + I
Sbjct: 20 KISLAADSLGMECYVVGGYVRDIFLERPSNDIDVVVVGSGIQVADALKKLLGRRAHISVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
++GT ++ + R + + V + D RRDFTINAL +
Sbjct: 80 RNFGTAQVKFGSMEIEFVGARKESYSHDSRKPAVENGTLEDDQNRRDFTINALAICLNKE 139
Query: 135 V----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
ID GGL D+ + I+ D +D LR++R RF A I+ A
Sbjct: 140 RFGELIDPFGGLEDMEDGIIRTPLDPDITFSDDPLRMMRCVRFAAQLNFF-IEDATFEAL 198
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----------Q 239
+ +KI+S+ERI E++K++ P +Y G+ + I ++ +
Sbjct: 199 RRNADRIKIVSAERIADELHKIMMTPVPSKGFFELYRSGLLEIILPELCALDVVDTRNGK 258
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----AKKFSLPREIRYFL 295
+ + + + + + LR+ L K F I +
Sbjct: 259 AHKNNFYHTLEVVDNIAKHTDNLWLRWAALFHDIGKPRSKRWNPAVGWTFHNHNFIGAKM 318
Query: 296 IS-------------------FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
+ + + T++ E+ + + L
Sbjct: 319 LPGIFRRLKFPMDAKLKFVQKLVDMHMRPITIADDEVTDSAVRRLMNDAGDDVNDLMLLC 378
Query: 337 YNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY-GIPPGKKVG 382
++T ++ + L + ++ + G+++++ + P ++VG
Sbjct: 379 EADITSKNAQRKQRFLDNFRIVREKLKNLEERDYKRLLQPCIDGNEIMEMFHLQPSREVG 438
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ K +++ +E L LLRK S
Sbjct: 439 ALKQSLKDAVLDNKVPNEREPLLELLRKKAKS 470
>gi|237720154|ref|ZP_04550635.1| tRNA nucleotidyltransferase [Bacteroides sp. 2_2_4]
gi|260173994|ref|ZP_05760406.1| tRNA nucleotidyltransferase [Bacteroides sp. D2]
gi|315922263|ref|ZP_07918503.1| tRNA nucleotidyltransferase [Bacteroides sp. D2]
gi|229450706|gb|EEO56497.1| tRNA nucleotidyltransferase [Bacteroides sp. 2_2_4]
gi|313696138|gb|EFS32973.1| tRNA nucleotidyltransferase [Bacteroides sp. D2]
Length = 477
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 75/453 (16%), Positives = 159/453 (35%), Gaps = 59/453 (13%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + + +VGG VRD + +DID+ + K + +
Sbjct: 20 QIAETADTLGMECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKQLGRGAHVSVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133
++GT ++ R + R + +V + D RRDFTINAL
Sbjct: 80 KNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKA 139
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GGL D++ +TI+ D +D LR++R RF G ID D +
Sbjct: 140 RFGELVDPFGGLEDMKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLGFY-IDDDTFESL 198
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241
+ K+ ++I+S ERI E+NK++ + P + + G+ IF + +
Sbjct: 199 CRNKERIEIISRERIADELNKIILSPIPSKGFIDLERSGLLSLIFPEFAALQGVETRNGR 258
Query: 242 --SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------ 281
+ + + + + + LR+ L+ K +
Sbjct: 259 SHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPKAGWTFHNHNFIGEKM 318
Query: 282 -----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
K E ++ + + ++ + + + L
Sbjct: 319 IPHIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMMLC 378
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++ + L++ + P++G+++++ +G+ P ++VG
Sbjct: 379 EADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQPPVSGEEIMEIFGLEPCREVG 438
Query: 383 NILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
+ K ++ E +K+
Sbjct: 439 VLKSAIKDAILDGVIPNEYEAAHAFMLERAKKM 471
>gi|15828457|ref|NP_302720.1| hypothetical protein ML2697 [Mycobacterium leprae TN]
gi|221230934|ref|YP_002504350.1| pcnA [Mycobacterium leprae Br4923]
gi|13093887|emb|CAC32229.1| pcnA [Mycobacterium leprae]
gi|219934041|emb|CAR72797.1| pcnA [Mycobacterium leprae Br4923]
Length = 486
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 86/453 (18%), Positives = 169/453 (37%), Gaps = 56/453 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTRYK 69
H L ++ S+ + +VGG+VRD+L+ D+D AT P++V +I +
Sbjct: 23 HTPVLRDLGSVFAASGHELYLVGGSVRDALLGRLDSPDLDFATDAGPEQVQQIMRRWADN 82
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY 128
+ T I +GTI + +ITT R+D R +V F+ D +RRDFT+NA+
Sbjct: 83 LWETGIEFGTIGVGKGDYRLEITTFRADRYDQVSRNPEVRFSDRLDDDLVRRDFTVNAMA 142
Query: 129 A----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
G+ D +GGL LR R ++ +D LR+LR RF + G +
Sbjct: 143 VRIASYGPGEFFDPLGGLAALRVRVLETPAAPSVSFGDDPLRMLRAARFVSQLGF-TVAP 201
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------ 238
A + L +S+ER+ +E++KLL +P I + G+ + + ++
Sbjct: 202 QVHAAIEEMASQLARISAERVSTELDKLLLGNDPAAGIDLLVQTGMGEVVLPEIGDMRMA 261
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM---------- 281
+++ L+ + +A + + D +LR+ L+ K +
Sbjct: 262 IDEHHQHKDVYQHSLTVLRQAIALEDNGPDLVLRWAALLHDIGKPATRRHELNGGVSFHH 321
Query: 282 ------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
+ +++ + + + Y+ ++
Sbjct: 322 HEVVGAKMVRKRMRALKYAKQLVDDVSQLVYLHLRFHGYGEGKWTDSAVRRYVTDAGPLL 381
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGI 375
++L + + + + + L G+ ++ I
Sbjct: 382 SRLHKLVRADCTTRNQRRAARLQDSYDRLEARIAELAAEEDLARVRPDLDGNQIMALLDI 441
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
P G +VG K+ ++ ++E LL
Sbjct: 442 PAGPQVGEAWRFLKELRLDRGPLTNEEATAELL 474
>gi|302870711|ref|YP_003839348.1| tRNA adenylyltransferase [Micromonospora aurantiaca ATCC 27029]
gi|315506948|ref|YP_004085835.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Micromonospora sp. L5]
gi|302573570|gb|ADL49772.1| tRNA adenylyltransferase [Micromonospora aurantiaca ATCC 27029]
gi|315413567|gb|ADU11684.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Micromonospora sp. L5]
Length = 486
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 83/452 (18%), Positives = 156/452 (34%), Gaps = 58/452 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + + +VGG+VRD+L+ D+D T PD +++ +
Sbjct: 30 SPVADELGRRFAQAGHELHLVGGSVRDALLGRLGNDLDFCTDAHPDETIKVIRGWAESIW 89
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T +GTI +ITT R++ R V + D RRDFT+NA+
Sbjct: 90 ETGREFGTIACQRDGLNLEITTFRAEVYDQVSRNPVVQYGTSLTEDLKRRDFTVNAMAVS 149
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ D GGL DL + I+ G +D LR+LR RF A
Sbjct: 150 LPDHRFTDPYGGLADLAAKIIRTPGTPQESFRDDPLRMLRAARFAAQLRFAVHPDVRAAM 209
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ A +++ERI E KLL +P+ + + + G+ + ++ + L + +
Sbjct: 210 TEMAADL-DRITAERIRDEFTKLLCGADPITGLRLLVDTGLAERFLPELTGLKLT-IDEH 267
Query: 250 IEAEQVFEWKI--------------DSLLRFIVLISWQDKKS------------------ 277
+ + V+E + D +LR L+ K +
Sbjct: 268 AQHKDVYEHTLTVVSNAMSMESDGCDFVLRMAALMHDIGKPATKAVGADGRVSFHHHEVV 327
Query: 278 ----ILSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAK 328
+ K +EI ++ + + + +++ GD ++++
Sbjct: 328 GARLTKNRMKALRYSKEITSQVVKLVGLHLRFYGYGRGEWTDSAVRRYVTDAGD--LLSR 385
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + + + L G+ +++ G+PP
Sbjct: 386 LHKLTRSDCTTRNRRKAAQLAADYDALEERIARIAAEEDLARVRPDLDGNAIMELLGVPP 445
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G VG + K+ + E LLR
Sbjct: 446 GPVVGRAWQYLKELRLERGPLDRDEAEAELLR 477
>gi|326778131|ref|ZP_08237396.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Streptomyces cf. griseus XylebKG-1]
gi|326658464|gb|EGE43310.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Streptomyces cf. griseus XylebKG-1]
Length = 487
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 80/453 (17%), Positives = 164/453 (36%), Gaps = 53/453 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +VGG+VRD+L+ D+D T P+ V++I V
Sbjct: 34 SPVADDLARRFQEAGFGLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVW 93
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+
Sbjct: 94 EVGIAFGTVGSQKDGYQIEVTTYRSEAYDRTSRKPEVSYGDSIEDDLVRRDFTVNAMAVA 153
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + +D GGL DL +R ++ G +D LR+LR RF A + + + A
Sbjct: 154 LPEKEFVDPYGGLKDLADRVLRTPGTPEASFSDDPLRMLRAARFAAQLDF-EVAPEVVTA 212
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----- 244
+ + I+S+ER+ E+NKLL +++P + + + G+ + ++ + L+
Sbjct: 213 MTEMAARIDIVSAERVRDELNKLLLSQHPRKGLGLLVDTGLAAHVLPELPALRLESDEHH 272
Query: 245 --------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-------------------- 276
L+ + +A + E D +LR L+ K
Sbjct: 273 RHKDVYEHSLTVLEQAIDLEEDGPDLVLRLAALLHDIGKPRTRRFEKDGRVSFHHHEVVG 332
Query: 277 --SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
+ E+ + + E Y+ ++ +L
Sbjct: 333 AKMTKKRMTELKYSNELVKDVSKLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLERLHK 392
Query: 332 FLALHYNNLTHQDTCFILQ----------VLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + L + L G+++++ + PG
Sbjct: 393 LTRSDCTTRNKRKANALSRTYDGLEERIAQLKEQEELDSIRPDLDGNEIMRILEVGPGPV 452
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+G + + + ++ L++ A
Sbjct: 453 IGKAYGFLLELRLERG-PMERDAAVAALKEWWA 484
>gi|319948990|ref|ZP_08023091.1| polynucleotide adenylyltransferase [Dietzia cinnamea P4]
gi|319437345|gb|EFV92364.1| polynucleotide adenylyltransferase [Dietzia cinnamea P4]
Length = 542
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 77/454 (16%), Positives = 159/454 (35%), Gaps = 60/454 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L + + + + +VGG+VRD+++ D+D T P+ V I + V T
Sbjct: 65 LSPLAAAFGEAGHELYLVGGSVRDAVLGRLGTDLDFTTDARPEAVRGILDRYADAVWDTG 124
Query: 75 ISYGTIKIICRK-----KYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
I +GT+ + R + +ITT R+D R +VV+ D +RRDFT+NA+
Sbjct: 125 IEFGTLSAVKRDGDGIEQQIEITTFRADSYDGVTRNPEVVYGDTLSGDLVRRDFTVNAMA 184
Query: 129 ADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ +D + G++ L I +D LR+LR RF + G +
Sbjct: 185 VRLHPDGRHEFVDPLNGMDALLAGVIDTPAAPEQSFADDPLRMLRACRFVSQLGF-TLAP 243
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
A + + +++ER+ +E++K + P++ I + G+ + +V + L+
Sbjct: 244 RVFRAMTEMTAEIDRITAERVRAELDKTILGDYPIDGINMLCETGLADHVLPEVPGMKLE 303
Query: 245 QLSQVIEAEQVFE-------------WKIDSLLRFIVLISWQDKK--------------- 276
+ + + + D +LR+ L+ K
Sbjct: 304 RDEHMQHKDVYWHSLTVLKQAIDLEPEGPDLVLRWAALLHDIGKPATRAPKPGGGVTFHH 363
Query: 277 -------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
+ + P+++ + + + Y+ ++
Sbjct: 364 HEVVGAKMVRKRMRALKYPKQMIEDVSGLVFLHLRFHGYGEGQWTDSAVRRYVSDAGHLL 423
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGI 375
+L + + + + + L G++++ G+
Sbjct: 424 PRLHRLVRADCTTRNRRRAAKLQANYDSLERRIAEIEEKEDLARVRPDLDGNEIMSLLGL 483
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
PG VG K+ ++ E LLR
Sbjct: 484 GPGPDVGRAWAFLKELRLDRGPLDRDEAEAELLR 517
>gi|257065886|ref|YP_003152142.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Anaerococcus prevotii DSM 20548]
gi|256797766|gb|ACV28421.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Anaerococcus prevotii DSM 20548]
Length = 450
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 109/405 (26%), Positives = 175/405 (43%), Gaps = 43/405 (10%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
I+ L + KS VGGAVRDSL++ V DIDI T P+ + +F +K+I +
Sbjct: 12 IIERLKEAGFKSFPVGGAVRDSLLSREVSDIDITTDARPEEIEEVFRD--FKLIDIGKRF 69
Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYAKV-VFTRDWKADSLRRDFTINALYADQQGKV 135
GTIK+I + F+ITT R + DGR+ F+ + D RRDFTINA+ D QG++
Sbjct: 70 GTIKVIIEGEAFEITTFRKESAYRDGRHPTEVRFSDNLIDDLERRDFTINAMAFD-QGEI 128
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
ID GG +DL + I+ +GDA RI ED LR LR RF G I+ A +
Sbjct: 129 IDPFGGRDDLSMKVIRAVGDARERIDEDLLRSLRAVRFANRLGF-TIEESLKEAIRENAN 187
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ +S ERI SE++++L + P + I M G+ EIF +V+ ++ V
Sbjct: 188 KINSISQERIASELSEILTSATPSSGIRLMDEVGLLAEIFPEVKRTVGFDQHSSYHSDDV 247
Query: 256 FEWKIDSLLRFIVLIS------------------------------WQDKKSILSMAKKF 285
+ + L + ++ ++ + K+
Sbjct: 248 YNHSLKVLDKSPADLAVRFSALYHDVGKVYTFFLDERGEGRFFGHQNLSEEMLRKRLKEL 307
Query: 286 SLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ- 343
+ S + + T + I+KL G+ + + A +
Sbjct: 308 KFSNKFIDDATSLVKRHMDCSNTYTKKSIRKLLRRLGEGNLRQLFDLQRADILSTKHPDT 367
Query: 344 -----DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383
+ +VL D I K+ + G+D++ G P GK +G+
Sbjct: 368 SNIDLGEEILTEVLKDNIPKKRSELAIDGNDLISMGYPQGKIIGD 412
>gi|237723713|ref|ZP_04554194.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229437924|gb|EEO48001.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 474
Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats.
Identities = 77/459 (16%), Positives = 164/459 (35%), Gaps = 56/459 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
F++ I ++ + +VGG VRD + +DID+ + + F K +
Sbjct: 9 FNNKIFKLISETADELGVECYVVGGYVRDIFLARPSKDIDVVVVGSGIEMAQAFGKKLGR 68
Query: 70 --VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT ++ + R + + VV + D RRDFTINA+
Sbjct: 69 GAHVSVFKNFGTAQVKYHDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAM 128
Query: 128 YADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+++D GL+DL+ RTI+ D +D LR++R RF ID
Sbjct: 129 AVCLNKARFGELVDPFNGLDDLKERTIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-ID 187
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----- 238
A + K+ + I+S ERI E+NK+L A P + + G+ IF ++
Sbjct: 188 DTTFEALSRNKERIHIISKERIADELNKILLAPIPSKGFIELDRCGLLPLIFPELVALQG 247
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----- 287
+ + + + + + + LR+ L+ K +
Sbjct: 248 VETRNGRAHKDNFYHTLEVVDNISKHTDNLWLRWATLLHDIGKPRTKRWEPRIGWTFHNH 307
Query: 288 ------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
E ++ + + ++ + +
Sbjct: 308 NFIGEKMIPDLFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDI 367
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGI 375
+ L ++T ++ + L + + P+ G+++++ + +
Sbjct: 368 DDLMMLCEADITSKNEARKQKFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGEEIMRIFDL 427
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRKLIA 413
P +++G++ K ++ + L H+L+K +
Sbjct: 428 QPCREIGSLKSSIKDAILDGIIPNEHDAALEHMLKKAKS 466
>gi|256829240|ref|YP_003157968.1| polynucleotide adenylyltransferase region [Desulfomicrobium
baculatum DSM 4028]
gi|256578416|gb|ACU89552.1| Polynucleotide adenylyltransferase region [Desulfomicrobium
baculatum DSM 4028]
Length = 892
Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats.
Identities = 84/421 (19%), Positives = 159/421 (37%), Gaps = 20/421 (4%)
Query: 13 SDLINILSLL----NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
D++++L L + + VGG VRD L+ + DID+ +
Sbjct: 465 KDIVSLLQLAGQTGQELGVEVYAVGGFVRDMLLGIPNDDIDLVVEGDGIVFAQNLGHKLA 524
Query: 69 KVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + + + T +I + D+ T R + +V K D RRDF+IN L
Sbjct: 525 ARVRSHLKFRTAVLILPSGQKIDVATARLEYYEYPAALPIVELSSLKMDLYRRDFSINTL 584
Query: 128 YAD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
G+++D+ GG DL++ I+ + +ED RI+R RF + K
Sbjct: 585 AIHLCPPHFGRLVDFFGGQQDLKDGVIRVLH--SLSFVEDPTRIIRAIRFEQRFQFKIGS 642
Query: 184 SDGLVASIKAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK-----EIFLD 237
+ + + LS RI E+ L E PL+A++ M + G+ + F
Sbjct: 643 QTERLIKNAVRLNIFQKLSGARIRHELRLLAEDSAPLDALIRMRDLGLLQEIHPLLHFPQ 702
Query: 238 VQEISLDQLSQVIEAEQVF--EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+E L+++ ++I ++ E D + + + + + R L
Sbjct: 703 TKEALLEEIEKIITWYKLLFREESPDIWIVYFLGLVSGFDTHQVQALTSRLKFPPKRTDL 762
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
+ + + + K D I L Y + + +
Sbjct: 763 VESTRRQLRYVAMQLAQWGKNEGSLADLYEILSPLSLEGLLYTMAKQRKLELKKAISHYL 822
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
H + +TG D+ + G+ PG + NIL K+ +N+ + +E L +++ S
Sbjct: 823 THLQDVGILVTGSDIKEMGLEPGPQFANILRAVKRAVLNAEVRTREEQL-KYAKRMAGSL 881
Query: 416 Q 416
Q
Sbjct: 882 Q 882
>gi|325001233|ref|ZP_08122345.1| tRNA adenylyltransferase [Pseudonocardia sp. P1]
Length = 503
Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats.
Identities = 72/441 (16%), Positives = 146/441 (33%), Gaps = 60/441 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLM------NLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + + + +VGG+VRD+L+ + D+D T P+ ++ I
Sbjct: 45 ADRLAARFAERGHRLYLVGGSVRDALLRGTGAADRDPGDLDFTTDARPETILEIVEGWAD 104
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ T I++GT+ + ++TT R+D R +V F + D +RRDFT+NA+
Sbjct: 105 AIWDTGIAFGTVGLRRGDDILEVTTFRADSYDGASRNPEVRFGDTVEGDLVRRDFTVNAM 164
Query: 128 YAD---QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ + + +D GG L + +D LR+LR RF + G +
Sbjct: 165 AVELTGPERRFVDPHGGFAALAQGILDTPDLPERSFADDPLRMLRAARFVSQLGFTPAER 224
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A + +I + +KL+ +P + + + G+ + + +V ++ L+
Sbjct: 225 VTAAMTEMAGELARITAERVQAE-FSKLILGAHPRRGVELLCDTGLARHVVPEVPDMQLE 283
Query: 245 QLSQVIEA----------EQVFEWK---IDSLLRFIVLISWQDKK--------------- 276
+ EQ E + D LR L+ K
Sbjct: 284 TDEHMQHKDVYTHSLVVMEQAIERETDGPDLTLRLAALLHDIGKPATRRKEPDGRVSFHH 343
Query: 277 -------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
+ P+ + + + E Y+ ++
Sbjct: 344 HEVVGAKMTRKRMRALKYPKALIDDVSQLVYLHLRFHGYGKGEWTDSAVRRYVTDAGPLL 403
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVVKY-GI 375
+L + + + + + L G+ +++ GI
Sbjct: 404 DRLHDLVRSDCTTRNRRRAAALQRNYDGLEDRIAALREKEELDAIRPDLDGNQIMELLGI 463
Query: 376 PPGKKVGNILVHCKQEWINSS 396
PG VG H +
Sbjct: 464 APGPAVGKAYKHLLALRMEEG 484
>gi|327313325|ref|YP_004328762.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Prevotella denticola F0289]
gi|326945762|gb|AEA21647.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Prevotella denticola F0289]
Length = 474
Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats.
Identities = 79/462 (17%), Positives = 160/462 (34%), Gaps = 56/462 (12%)
Query: 10 FHDSDLIN-ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
D D+ + I +K + +VGG VRD + DID+ +V
Sbjct: 12 LLDKDIFHHISGAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVASELKSVLG 71
Query: 69 K--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
K + ++GT ++ + + R + + VV + D RRDFTINA
Sbjct: 72 KKAHLSVFRNFGTAQVKYKDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINA 131
Query: 127 LYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L + D GG++DL + I+ D +D LR++R RF I
Sbjct: 132 LAVCLNRERFGELVDPFGGVDDLWDGIIRTPLDPDVTFSDDPLRMMRCVRFATQLNFL-I 190
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ + A + ++I+S ERI E+NK++ P V +Y G+ + I ++
Sbjct: 191 EDETFEALERNADRIRIVSGERIEEELNKIMMTPTPSKGFVDLYRCGLLQLILPELVALD 250
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSL 287
+ + + + + + LR+ L+ K F
Sbjct: 251 VVETRNGRAHKNNFYHTLEVLDNICRHTDNLWLRWAALLHDIGKAKCKRWDAAAGWTFHN 310
Query: 288 PREI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ ++ + + ++ E+
Sbjct: 311 HNFVGAKMVPAIFRRLKLPMDSKMKYVQKLVDLHMRPIVIADEEVSDSAVRRLMNDAGDD 370
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY-G 374
+ + L ++T ++ + L + ++ + G+++++
Sbjct: 371 IDDLMTLCEADITSKNAVRKKRFLDNFRIVREKLRDLKERDYKRLLQPCIDGNEIMEMFH 430
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ P ++VG + K +++ +E L LLRK A +
Sbjct: 431 LRPSREVGTLKQTLKDAVLDNQVPNEREPLLALLRKKAAELE 472
>gi|304440633|ref|ZP_07400517.1| possible tRNA adenylyltransferase [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304370820|gb|EFM24442.1| possible tRNA adenylyltransferase [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 441
Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats.
Identities = 109/440 (24%), Positives = 187/440 (42%), Gaps = 45/440 (10%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L+N+ ++LN +S VGGAVRD ++ S+ D DI T PD + + Y
Sbjct: 4 IISDELMNLFNILNSH-YESYFVGGAVRDMILGYSIHDYDITTLATPDEIRKTLK--MYT 60
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
I S GT+ + DIT R + + +V+F++D K D RRDFTINA+
Sbjct: 61 TIDIGGSLGTVLALTENYSVDITPFRLDGEYKNFRKPEEVIFSKDVKEDLKRRDFTINAI 120
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
G+ IDYVGGL DL+N+ I+ IGDA+ RI ED LRILR RF Y I++
Sbjct: 121 LY--NGEFIDYVGGLRDLKNKIIRPIGDANIRIKEDALRILRAVRFATKYDF-EIEASLE 177
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
A I LK +S ERI E K+L KN + + IF I ++ + +
Sbjct: 178 SAIISNVNLLKNISFERIRDEFVKILLDKNVKKGMNLLRKLHIFDIILPEILQTYDYDQN 237
Query: 248 QVIEAEQVFEWKIDSL--------LRFIVLISWQDKKSILSM------------------ 281
+++ ++ + +R L+ K + SM
Sbjct: 238 SKYHENNLYDHILNVVGYSPEVLEVRLAALLHDIGKPATFSMGDDGVAHYFGHEIESSKI 297
Query: 282 ----AKKFSLPREIRYFLISFFNCNFNQKT-LSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
++F EI ++ + ++ ++ +++ G++ ++ + +A
Sbjct: 298 AKEVLRRFKFSNEIIKKVVILIENHMTFQSVMTDRALRRQIRKVGNENILDLYDLMVADR 357
Query: 337 YNNLTHQDTCFILQVLSDIIHW-----KKPLFP-LTGDDVVKYGIPPGKKVGNILVHCKQ 390
+ + I + KP F ++G D+++ G PG + IL +
Sbjct: 358 LGTMKSRSADDIYTRRDRVEELLKEPTSKPKFLNISGSDLIEMGFTPGPEFKKILNDLTE 417
Query: 391 EWINSSFQLSQEDLHHLLRK 410
++ + E L ++ +
Sbjct: 418 MVLDDPEINTNEKLRQIVER 437
>gi|229822936|ref|ZP_04449006.1| hypothetical protein GCWU000282_00228 [Catonella morbi ATCC 51271]
gi|229787749|gb|EEP23863.1| hypothetical protein GCWU000282_00228 [Catonella morbi ATCC 51271]
Length = 416
Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats.
Identities = 91/389 (23%), Positives = 161/389 (41%), Gaps = 25/389 (6%)
Query: 1 MVSIVQHKWFHDSD---LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M + ++ + +L + ++ VGG VRD+L+ + DIDIAT+ PD
Sbjct: 1 MTKTIN---LNNPLFQTAMPLLEAIESHGYEAYFVGGCVRDALLGKEIHDIDIATSATPD 57
Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRY--AKVVFTRDWKA 115
+ IF +GTI ++ +K+ ++ITT R++ R +V F R+ +
Sbjct: 58 EIQGIFP----VTFDVGKKHGTIVVVYKKENYEITTFRTEGTYSDRRRPDQVNFVRNLRE 113
Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
D+LRRDFTINAL D+ G+V DY GG DL+ I+ +G A R ED LR++R RF +
Sbjct: 114 DTLRRDFTINALALDRLGRVYDYHGGEQDLQAGIIRAVGTAMERFDEDALRMMRALRFAS 173
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G I+S A + L +S ERI E++KL++ + + G+ +
Sbjct: 174 QLGF-EIESQTFEAIGQLAPNLSYVSIERIRIELSKLMQGDYLGTSYKALTESGLCAYLL 232
Query: 236 LDVQEISLDQLSQVIEAEQ---VFEWKIDSLLRFIVLI--SWQDKKSILSMAKKFSLPRE 290
Q +L QV E D L + L+ D + + +
Sbjct: 233 GMEQVDALSVWQQVYETLAAQIAAGLARDERLVWWALVKALGLDSTQARAFLRDWKHSNP 292
Query: 291 IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
+ + + + + ++ L I+ ++ + + Q
Sbjct: 293 FIKDVSDLLELDQAFASGPLDAWQLY------QMPTHVLAIYETYAFHQGWLSQSNQLSQ 346
Query: 351 VLSDIIHWKKPLFPLTGDDVVK-YGIPPG 378
+ + + + G V++ G+ G
Sbjct: 347 AKAQLPLASRSDLAINGQKVMEALGLSRG 375
>gi|149278885|ref|ZP_01885020.1| tRNA nucleotidyltransferase [Pedobacter sp. BAL39]
gi|149230504|gb|EDM35888.1| tRNA nucleotidyltransferase [Pedobacter sp. BAL39]
Length = 468
Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats.
Identities = 81/456 (17%), Positives = 164/456 (35%), Gaps = 54/456 (11%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ ++ + + ++ ++GG VRD ++ +DIDI +
Sbjct: 5 LQHPVFKVLANIAHTQQTEAYVIGGYVRDIFLSRPSKDIDIVVLGNGIDFAEAAGRQLRT 64
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ ++GT + + + R + +V + D LRRDFTINAL
Sbjct: 65 KVAVFKNFGTAMLKTQDLEIEFVGARKESYRADSRKPIVENGTIQDDQLRRDFTINALAI 124
Query: 130 DQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
D G+ DL+N+ I+ D +D LR++R RF A G +ID
Sbjct: 125 SLNADNYAALVDPFDGITDLKNKLIRTPLDPEITFSDDPLRMMRAIRFAAQLGF-SIDHQ 183
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---- 241
+ A K K+ + I+S ERI E+NK++ +K P ++++ G+ IF + +
Sbjct: 184 AIEAIKKQKERIGIVSKERITDELNKIILSKLPSVGFKYLFDTGLLHLIFPQMANLYGVE 243
Query: 242 -------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP------ 288
+ + + + E D LR+ ++ K + +
Sbjct: 244 IINGKGHKDNFYHTLQVLDNICEATDDIWLRWAAILHDIAKPATKRFEEGHGWTFHGHED 303
Query: 289 -----------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
E ++ + L+ + ++
Sbjct: 304 KGARMVPQIFGQLKLPLNEKMKYVQKLVQLHLRPIVLAQEVVTDSAVRRLLFDAGEDIES 363
Query: 332 FLALHYNNLTHQDTCFILQVLSDII-------------HWKKPLFPLTGDDVVK-YGIPP 377
+ L ++T ++ + + ++ + P+TG+D+++ +G+
Sbjct: 364 LMMLCNADVTTKNEYKVKKYRNNFELVKQKLKDVEERDKIRNWQPPITGNDIMQIFGLTA 423
Query: 378 GKKVGNILVHCKQEWINSSFQLS-QEDLHHLLRKLI 412
GK+VG I ++ + S E L +L K
Sbjct: 424 GKEVGLIKNAIREAILEGEITNSYDEALQFMLEKAK 459
>gi|281356278|ref|ZP_06242770.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Victivallis vadensis ATCC BAA-548]
gi|281316970|gb|EFB00992.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Victivallis vadensis ATCC BAA-548]
Length = 447
Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats.
Identities = 92/427 (21%), Positives = 166/427 (38%), Gaps = 42/427 (9%)
Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
L + + +VGG+VRD L+ D D+ T+ P+ + ++F+ R S+G
Sbjct: 24 RLREHGFAAGLVGGSVRDLLLGKVPSDFDLVTSAKPEELAQLFADFRA----VGASFGVS 79
Query: 81 KIICRKKYFDITTLRSDLIT-DGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVID 137
I ++ T R + DGR+ + V +T D + D RRDFTINAL+ D +G+V D
Sbjct: 80 LIGVGGVSLEVATAREERNYLDGRHPELVRYTADLECDVQRRDFTINALWYDPAEGEVCD 139
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
VGG++DL ++ +GDA R EDYLR+LR RF A + + A
Sbjct: 140 CVGGIDDLERGVVRTVGDAGRRFNEDYLRMLRAVRFAARL-RFELFPETRRAIQALAPKA 198
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
L+ ERI +E+ ++L +P A+ +++ G+ + +V + + E
Sbjct: 199 AGLAGERINAEVTRMLTGPDPARAVRMLFDTGLLAAVLPEVAALDGVEQPPEFHPEGDVL 258
Query: 258 WKIDSLLRFIVLISWQDKKSILSM--------------------------------AKKF 285
+L + S+L +
Sbjct: 259 THTLLMLSHMACADANLAWSVLLHDISKPEARTVGEDGRARFYAHESMGAELAGKILDRL 318
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI--FLALHYNNLTHQ 343
R + + ++ KL L D +L++ + + L
Sbjct: 319 HFSSADRDSITQAVRNHMRFASVRDMRAAKLRKLIADPNFPLELELHRLDCISCHGLMEC 378
Query: 344 DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED 403
+ ++ ++ H + P + G D+V G+ PG + +L + + +E
Sbjct: 379 FVFLLDRLAAEPEHRRLPEPWVRGRDLVAAGVKPGPRFKTVLEEVFELQLAGELSTPEEA 438
Query: 404 LHHLLRK 410
L L +
Sbjct: 439 LETALER 445
>gi|296392447|ref|YP_003657331.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Segniliparus rotundus DSM 44985]
gi|296179594|gb|ADG96500.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Segniliparus rotundus DSM 44985]
Length = 513
Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats.
Identities = 82/451 (18%), Positives = 166/451 (36%), Gaps = 59/451 (13%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+ + +VGG+VRD+L+ D+D T P+ ++ ++ T I++
Sbjct: 64 LAERFADQGHQLYLVGGSVRDALLGRLGDDLDFTTDARPEHTQKLLRGWAEEMWDTGIAF 123
Query: 78 GTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYA----DQQ 132
GT+ + +ITT R D R V F D + D RRDF +NA+
Sbjct: 124 GTVGALKNGNKLEITTFRKDDYDQSSRNPAVDFGTDLRTDLTRRDFRMNAMAVSLTAQGC 183
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+ +D +GGL D+ I +D LR+LR RF A G A++
Sbjct: 184 GEFVDPLGGLEDVLAGRIDTPDTPEISFGDDPLRMLRAARFAAQLGF-TWSPRVARATVD 242
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL--------- 243
+ +++ER+ +E+ KL+ ++ + + + + G+ + + +V ++ L
Sbjct: 243 MAGEITRITAERVGAELQKLIVGEHAVEGVELLVDSGLAEFVLPEVPQLQLATDAAHHHK 302
Query: 244 ----DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------ 281
L+ + A + D +LR+ L+ K +
Sbjct: 303 DVYRHSLAVLGNAMALEPGDPDPVLRWAALLHDIGKPATRRFEAGGAVSFHHHEVVGAKL 362
Query: 282 ----AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
+ + P+ + + + +++ + +++ G+ + L +
Sbjct: 363 ARKRLRALAFPKHMVEDVGKLVFLHMRFYGYGEQSWTDSAVRRYVVDAGELLPKLNLLVR 422
Query: 333 LALHYNNLT--------HQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGN 383
N + + L++ K L G+ +++ GI PG+ VG
Sbjct: 423 ADCTTRNARRSRQLAAAYDRFEERIAKLAEAEDLAKVRPDLDGNAIMEILGIGPGRAVGE 482
Query: 384 ILVHCKQEWINSSFQLSQED----LHHLLRK 410
H K+ + QE L ++
Sbjct: 483 AWHHLKELRLEHGPLDPQEAKRHLLDWWAKR 513
>gi|237708182|ref|ZP_04538663.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229457735|gb|EEO63456.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 474
Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats.
Identities = 77/459 (16%), Positives = 164/459 (35%), Gaps = 56/459 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
F++ I ++ + +VGG VRD + +DID+ + + F K +
Sbjct: 9 FNNKIFKLISETADELGLECYVVGGYVRDIFLARPSKDIDVVVVGSGIEMAQAFGKKLGR 68
Query: 70 --VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT ++ + R + + VV + D RRDFTINA+
Sbjct: 69 GAHVSVFKNFGTAQVKYHDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAM 128
Query: 128 YADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+++D GL+DL+ RTI+ D +D LR++R RF ID
Sbjct: 129 AVCLNKARFGELVDPFNGLDDLKERTIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-ID 187
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----- 238
A + K+ + I+S ERI E+NK+L A P + + G+ IF ++
Sbjct: 188 DTTFEALSRNKERIHIISKERIADELNKILLAPIPSKGFIELDRCGLLPLIFPELVALQG 247
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----- 287
+ + + + + + + LR+ L+ K +
Sbjct: 248 VETRNGRAHKDNFYHTLEVVDNISKHTDNLWLRWATLLHDIGKPRTKRWEPRIGWTFHNH 307
Query: 288 ------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
E ++ + + ++ + +
Sbjct: 308 NFIGEKMIPDLFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDI 367
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGI 375
+ L ++T ++ + L + + P+ G+++++ + +
Sbjct: 368 DDLMMLCEADITSKNEARKQKFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGEEIMRIFDL 427
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRKLIA 413
P +++G++ K ++ + L H+L+K +
Sbjct: 428 QPCREIGSLKSSIKDAILDGIIPNEHDAALEHMLKKAKS 466
>gi|254884767|ref|ZP_05257477.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319644170|ref|ZP_07998695.1| polyA polymerase [Bacteroides sp. 3_1_40A]
gi|254837560|gb|EET17869.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317384292|gb|EFV65263.1| polyA polymerase [Bacteroides sp. 3_1_40A]
Length = 474
Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats.
Identities = 77/459 (16%), Positives = 164/459 (35%), Gaps = 56/459 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
F++ I ++ + +VGG VRD + +DID+ + + F K +
Sbjct: 9 FNNKIFKLISETADELGLECYVVGGYVRDIFLARPSKDIDVVVVGSGIEMAQTFGKKLGR 68
Query: 70 --VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT ++ + R + + VV + D RRDFTINA+
Sbjct: 69 GAHVSVFKNFGTAQVKYHDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAM 128
Query: 128 YADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+++D GL+DL+ RTI+ D +D LR++R RF ID
Sbjct: 129 AVCLNKARFGELVDPFNGLDDLKERTIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-ID 187
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----- 238
A + K+ + I+S ERI E+NK+L A P + + G+ IF ++
Sbjct: 188 DTTFEALSRNKERIHIISKERIADELNKILLAPIPSKGFIELDRCGLLPLIFPELVALQG 247
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----- 287
+ + + + + + + LR+ L+ K +
Sbjct: 248 VETRNGRAHKDNFYHTLEVVDNISKHTDNLWLRWATLLHDIGKPRTKRWEPRIGWTFHNH 307
Query: 288 ------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
E ++ + + ++ + +
Sbjct: 308 NFIGEKMVPDLFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDI 367
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGI 375
+ L ++T ++ + L + + P+ G+++++ + +
Sbjct: 368 DDLMLLCEADITSKNEARKQKFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGEEIMRIFDL 427
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRKLIA 413
P +++G++ K ++ + L H+L+K +
Sbjct: 428 QPCREIGSLKSSIKDAILDGIIPNEHDAALEHMLKKAKS 466
>gi|225174850|ref|ZP_03728847.1| CBS domain containing protein [Dethiobacter alkaliphilus AHT 1]
gi|225169490|gb|EEG78287.1| CBS domain containing protein [Dethiobacter alkaliphilus AHT 1]
Length = 873
Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats.
Identities = 83/419 (19%), Positives = 162/419 (38%), Gaps = 27/419 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L+ + +K K VGG +RD L+N+ D+D+ +K + +
Sbjct: 461 LLLVAQKADKENVKVFAVGGFIRDLLLNIKNHDLDLVVEPAAIPFAEELNKMLGGRLTSH 520
Query: 75 ISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+GT I+ + D+ T R + V K D RRDFTIN L
Sbjct: 521 EKFGTASIVLPEGIHIDLVTSRQEFYARPAALPEVEQSSLKNDLFRRDFTINTLACSLNS 580
Query: 134 ----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
K+ID G+ DL I+ + + +ED LR+LR RF +G + ++ +
Sbjct: 581 PGFGKLIDLFNGIGDLEKGLIRVL--YNLSFVEDPLRVLRAIRFEQRFGFRLEETTLSLM 638
Query: 190 SIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A+ + + +S ER+ E+ L+ + ++ + I IF ++ +S +
Sbjct: 639 ENAAQTRVLEKVSKERLHDELVLALQEEKAPEILIRYFTLNIAPMIFPGIR-LSDALQER 697
Query: 249 VIEAEQVFEWKIDSL---------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ A ++ W + L L+ + + ++ LP++ R +++
Sbjct: 698 LFAAREMCYWANRNWPDTEVVPGNLYLAALLLEAPFQEARHICRRLRLPQKQREPILAAV 757
Query: 300 NCNFNQKTLSIPEIKKL--FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
K + K Y + L + A + + T + L I
Sbjct: 758 EAVPRLKEKLLANALKPSELYRLFSGQPVETLLLLQADSKQSRIWESTALYWEKLRHI-- 815
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
++G D+ + G PG +L H + +N + +E+L + +K++A+ +
Sbjct: 816 ----QPHISGHDLRELGFKPGPGFQEVLSHIRAARLNGEVKNREEEL-AMAKKMLAARE 869
>gi|189468554|ref|ZP_03017339.1| hypothetical protein BACINT_04957 [Bacteroides intestinalis DSM
17393]
gi|189436818|gb|EDV05803.1| hypothetical protein BACINT_04957 [Bacteroides intestinalis DSM
17393]
Length = 476
Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats.
Identities = 69/446 (15%), Positives = 151/446 (33%), Gaps = 55/446 (12%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPT 73
I ++ + +VGG VRD + +DID+ + K + +
Sbjct: 19 KRISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIEMAEALGKRLGRGAHVAL 78
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
++GT ++ R + R + +V + D RRDFTINAL
Sbjct: 79 FKNFGTAQVKYRGIEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNQ 138
Query: 134 ----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+++D GG+ DL+ +TI+ D +D LR++R RF ID +
Sbjct: 139 SRFGELVDPFGGIEDLKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IDDTTFES 197
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------- 238
+ + I+S ERI E+NK++ + P + + G+ IF ++
Sbjct: 198 LCRNCGRISIISKERIADELNKIILSPIPSKGFIDLDRSGLLSLIFPELAALQGVETRNG 257
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----------- 287
+ + + + + + LR+ L+ K + +
Sbjct: 258 RAHKDNFYHTLEVLDNISRKTDNLWLRWAALLHDIAKPATKRWEPRAGWTFHNHNFIGEK 317
Query: 288 ------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335
E ++ + + ++ + + + L
Sbjct: 318 MVPDIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMTL 377
Query: 336 HYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKV 381
++T ++ + L++ + P++G+++++ + + P ++V
Sbjct: 378 CEADITSKNMERKQRFLNNFQLVRQKLKDLEERDRVRNFQPPVSGEEIMETFNLEPCREV 437
Query: 382 GNILVHCKQEWINSSFQLSQEDLHHL 407
G + K ++ E
Sbjct: 438 GALKSAIKDAILDGVIPNEYEAARAF 463
>gi|313677488|ref|YP_004055484.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Marivirga tractuosa DSM 4126]
gi|312944186|gb|ADR23376.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Marivirga tractuosa DSM 4126]
Length = 471
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 78/451 (17%), Positives = 160/451 (35%), Gaps = 55/451 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-- 68
+ + ++ +VGG VRD ++ +DID + + +
Sbjct: 9 QHPVFELVKKSAHSLGIEAYVVGGYVRDLILKRPSKDIDFVCVGSGIDLAKEVAANIGSK 68
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
K ++GT I + R + +V + D RRDFTINAL
Sbjct: 69 KKFQVFKNFGTASIHHGDWELEFVGARKESYQRDSRKPIVEEGTLEDDQNRRDFTINALA 128
Query: 129 ADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ D GG+ DL+ + IK + +D LR++R RF + +I
Sbjct: 129 ISLNEENYGALIDPFGGVKDLKKKIIKTPLEPDVTFSDDPLRMIRAIRFASQLNF-DIAP 187
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--- 241
+ + IK + LKI+S+ERI E+NK++ + P +Y+ + + F ++ E+
Sbjct: 188 NTFDSIIKNAERLKIISAERITDELNKIILTEKPSYGFKLLYHAQLLDKFFPEIVELQGV 247
Query: 242 --------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP----- 288
+ + + E+ D LR+ ++ K + K
Sbjct: 248 DEKNGFKHKDNFYHTLQVLDNTAEYGGDLWLRWAAILHDIAKPATKRFNPKQGWTFHGHE 307
Query: 289 ------------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330
E ++ + L I ++
Sbjct: 308 DKGARMVPKIFKRMKLPLNEKMKYVQKLVLLHLRPIPLVRDNITDNAVRRLLFEAGDDIE 367
Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGIP 376
+ L ++T ++ + Q ++ ++ P++G+D++K + +
Sbjct: 368 DLMTLCRADVTSKNMNKVKQFRANFDKVEQKMKEVEENDQVRNFQPPVSGEDIMKAFDLS 427
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
P K++G I K+ ++ Q ++E+ +
Sbjct: 428 PCKEIGIIKSEIKEAILDGEIQNNREEAYEY 458
>gi|238061892|ref|ZP_04606601.1| HDIG domain-containing protein [Micromonospora sp. ATCC 39149]
gi|237883703|gb|EEP72531.1| HDIG domain-containing protein [Micromonospora sp. ATCC 39149]
Length = 486
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 87/454 (19%), Positives = 155/454 (34%), Gaps = 57/454 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +VGG+VRD+L+ D+D T PD+ +RI +
Sbjct: 30 SPVADELGRRFADAGHELHLVGGSVRDALLGRLGDDLDFCTDAHPDQTLRIVKGWAESIW 89
Query: 72 PTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T +GTI +ITT R R V + D RRDFTINA+
Sbjct: 90 ETGREFGTIGCQRDGLRLEITTFRAEAYDQVSRNPIVEYGTSLTEDLRRRDFTINAMAVS 149
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + D GGL+DL R I+ G +D LR+LR RF A
Sbjct: 150 LPEHRFTDPHGGLDDLAARVIRTPGTPAESFGDDPLRMLRAARFTAQLRFAVHPDVRAAM 209
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ A +++ERI E KLL +P+ + + + G+ + ++ + L+ + +
Sbjct: 210 AAMAADL-DRITAERIRDEFTKLLCGADPITGLRLLVDTGLAERFLPELTGLKLE-IDEH 267
Query: 250 IEAEQVFEWKI--------------DSLLRFIVLISWQDKKS------------------ 277
+ + V+E + D +LR L+ K +
Sbjct: 268 AQHKDVYEHTLTVVANAVSYETDGCDFVLRMAALMHDVGKPATKAVGSDGRVSFHHHEVV 327
Query: 278 ----ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333
+ K P+++ ++ + E L
Sbjct: 328 GARLTKARMKAMRYPKDVTAQVVKLVGLHLRFYGYGRGEWTDSAVRRYVTDAGDLLARLH 387
Query: 334 ALHYNNLTHQDT-------------CFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGK 379
L ++ T ++ + ++ + L G+ +++ G+PPG
Sbjct: 388 KLTRSDCTTRNRRKAAALAADYDALEERIARIAAEEDLARVRPDLDGNAIMELLGVPPGP 447
Query: 380 KVGNILVHCKQEWINSSFQLSQE---DLHHLLRK 410
VG H K+ + E +L R+
Sbjct: 448 MVGRAWKHLKELRLERGPLDRDEAEAELLRWARE 481
>gi|159040572|ref|YP_001539825.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Salinispora arenicola CNS-205]
gi|157919407|gb|ABW00835.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Salinispora arenicola CNS-205]
Length = 485
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 85/456 (18%), Positives = 157/456 (34%), Gaps = 61/456 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +VGG+VRD+L+ D+D T PD+ ++I V
Sbjct: 29 SPVADELGRRFVAAGHELHLVGGSVRDALLGRLGDDLDFCTDAHPDQTLQIVRGWAEAVW 88
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T +GTI + +ITT R++ R V + D RRDFT+NA+
Sbjct: 89 ETGREFGTIGVQRDGLRLEITTFRAEVYDQVSRNPVVQYGTSLTEDLKRRDFTVNAMAVS 148
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ D GGL DL + ++ +D LR+LR RF A
Sbjct: 149 VPDHRFTDPHGGLADLATKVVRTPSAPEESFRDDPLRMLRAARFAAQLRFAVHPDVRAAM 208
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ A +++ERI E KLL +P+ + + + G+ + ++ + L+ + +
Sbjct: 209 TRMATDL-DRITAERIRDEFTKLLCGADPVTGLRLLVDSGLAERFLPELTGLKLE-IDEH 266
Query: 250 IEAEQVFEWKI--------------DSLLRFIVLISWQDKKS------------------ 277
+ + V+E + D +LR L+ K +
Sbjct: 267 AQHKDVYEHTLTVVRNAVSYEEDGCDFVLRMAALMHDVGKPATKAVGPDGRVSFHHHEVV 326
Query: 278 ----ILSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAK 328
+ K PRE + + + + + +++ GD ++ +
Sbjct: 327 GARLTKARMKALRFPREAIAKVTALVALHLRFYGYGRGEWTDSAVRRYVADAGD--LLPR 384
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + + + L G+ ++K G+PP
Sbjct: 385 LHKLTRSDCTTRNRRKAAQLAADYDALEERIARIAAEEDLARVRPDLDGNAIMKLLGVPP 444
Query: 378 GKKVGNILVHCKQEWINSSFQLSQE---DLHHLLRK 410
G VG H K+ + E +L R+
Sbjct: 445 GPVVGLAWKHLKELRLERGPLGRDEAEAELLRWARE 480
>gi|325299813|ref|YP_004259730.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Bacteroides salanitronis DSM 18170]
gi|324319366|gb|ADY37257.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Bacteroides salanitronis DSM 18170]
Length = 473
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 75/452 (16%), Positives = 158/452 (34%), Gaps = 59/452 (13%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY--KVIPTSI 75
I ++ + +VGG VRD +N +DID+ + K +
Sbjct: 15 ISQTADELGLECYVVGGYVRDIFLNRPSKDIDVVVVGSGIQTAEALGKRLGPKAHVSVFH 74
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-- 133
++GT ++ + R + + VV + D RRDFTINAL
Sbjct: 75 NFGTAQVKFFDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINALAVCMNKAR 134
Query: 134 --KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
++ID GGL+DL+ I+ D +D LR+LR RF I+ + A
Sbjct: 135 FGELIDPFGGLDDLKQGIIRTPLDPDITFSDDPLRMLRCIRFATQLNFY-IEDETFNALE 193
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------- 241
+ ++ +KI+S ERI E+NK+L + P V + G+ + IF ++ +
Sbjct: 194 RNRERIKIISYERIKDELNKILLSPIPSKGFVDLDRCGLLELIFPELTALQGVEVRNGRG 253
Query: 242 -SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL------------- 287
+ + + + + + LR+ L+ K +
Sbjct: 254 HKDNFYHTLEVVDNIAKVSDNLWLRWATLLHDIGKPRTKRWDPRLGWTFHNHNYIGEKMV 313
Query: 288 ----------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
E ++ + ++ E+ + +AL
Sbjct: 314 PEIFRRMKLPMNEKMKYVQKLVGLHMRPIVIADDEVTDSAVRRLLFEAGDDIDDLMALCE 373
Query: 338 NNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVGN 383
++T ++ + L + + P+ G ++++ + + P +++G+
Sbjct: 374 ADITSKNEARKQRFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGKEIMQVFNLHPCREIGD 433
Query: 384 ILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
+ K ++ + + +++
Sbjct: 434 LKSAIKDAILDGAIPNEHDAAFRFMLEKAKEM 465
>gi|329961598|ref|ZP_08299657.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacteroides fluxus YIT 12057]
gi|328531590|gb|EGF58424.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacteroides fluxus YIT 12057]
Length = 476
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 72/461 (15%), Positives = 160/461 (34%), Gaps = 60/461 (13%)
Query: 10 FHDSDL-INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ D+ I +K + +VGG VRD + +DID+ + ++
Sbjct: 12 YFSDDIFKRISGTADKLGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGRSLG 71
Query: 69 K--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + ++GT ++ + R + T +V + D RRDFTINA
Sbjct: 72 RGAHVSVFKNFGTAQLKYHGTEVEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTINA 131
Query: 127 LYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ +++D GG+ DL+ +TI+ D +D LR++R RF I
Sbjct: 132 MAVCLNSARYGELVDPFGGMEDLKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-I 190
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
D + + + + I+S ERI E+NK+L + P + + G+ + IF ++
Sbjct: 191 DDVTFESLQRNRDRISIISKERIADELNKILLSPVPSKGFIDLDRSGLLELIFPELVALQ 250
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL---- 287
+ + + + + + + LR+ L+ K +
Sbjct: 251 GVETRNGRAHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPVTKRWEPRAGWTFHN 310
Query: 288 -------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
E ++ + + ++ +
Sbjct: 311 HNFIGEKMIPEIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDD 370
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YG 374
+ + L ++T ++ + L++ + P++G+++++ +G
Sbjct: 371 IDDLMTLCEADITSKNMERKKRFLNNFQLVRQKLKDLEERDRIRNFQPPVSGEEIMETFG 430
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
+ P ++VG + K ++ E K+
Sbjct: 431 LTPCREVGALKSAIKDAILDGVIPNEYEAARTFMLQRAEKI 471
>gi|95931324|ref|ZP_01314039.1| Polynucleotide adenylyltransferase region [Desulfuromonas
acetoxidans DSM 684]
gi|95132625|gb|EAT14309.1| Polynucleotide adenylyltransferase region [Desulfuromonas
acetoxidans DSM 684]
Length = 880
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 74/407 (18%), Positives = 144/407 (35%), Gaps = 15/407 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L I S+ ++ VGG VRD L++ D+DI R F+ +
Sbjct: 468 LSQISSVADEVGCSVYAVGGFVRDLLLHKKNLDVDIVVEGNAIDFARRFADQHACRVRAH 527
Query: 75 ISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ T +I D+ + R++ + V K D RRDFTIN L
Sbjct: 528 EKFVTAVVIFDDGYKLDVASTRTEYYLEPGALPNVEEASIKLDLYRRDFTINTLALALNH 587
Query: 134 KVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVAS 190
+ + + +ED R+ R RF G K + ++ L+ S
Sbjct: 588 DSYGELLDYFGAQRDLHDKAIRVLHNLSFVEDPTRMFRAVRFEQRLGFKLGMHTENLLRS 647
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIV------HMYNGGIFKEIFLDVQEISLD 244
++ + R+++E+ +L +NP AI + + V+E
Sbjct: 648 AVEMDFVQRVGPLRLFNELTIILNEENPFPAISRLEELGLLACLCDQWRVDARVKESFRQ 707
Query: 245 QLSQVIEAEQVFEWKI--DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ E ++ ++ F+ L ++ ++ K S+P+ + L+
Sbjct: 708 AQKALHWHELLYTGSPVERWVVYFLCLSQPLSDDAMAAVCGKLSVPQRWQDILVGERCRV 767
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIF--LALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ +K Y + +LK L Y L V + W+
Sbjct: 768 MKVFHRLERDQQK-LAEYRPSEVSQRLKGIGDEMLLYAMARTHSDAVRLAVSQYLTQWRD 826
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
L GDD++ G+ G ++G +L + +++ Q+++ +
Sbjct: 827 VKPLLNGDDLIALGVDRGPRIGEVLALLRDARLDAEVSSRQDEVDFV 873
>gi|182437476|ref|YP_001825195.1| putative RNA nucleotidyltransferase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|178465992|dbj|BAG20512.1| putative RNA nucleotidyltransferase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 480
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 80/453 (17%), Positives = 164/453 (36%), Gaps = 53/453 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +VGG+VRD+L+ D+D T P+ V++I V
Sbjct: 27 SPVADDLARRFQEAGFGLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADAVW 86
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+
Sbjct: 87 EVGIAFGTVGSQKDGYQIEVTTYRSEAYDRTSRKPEVSYGDSIEDDLVRRDFTVNAMAVA 146
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + +D GGL DL +R ++ G +D LR+LR RF A + + + A
Sbjct: 147 LPEKEFVDPYGGLKDLADRVLRTPGTPEASFSDDPLRMLRAARFAAQLDF-EVAPEVVTA 205
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----- 244
+ + I+S+ER+ E+NKLL +++P + + + G+ + ++ + L+
Sbjct: 206 MTEMAARIDIVSAERVRDELNKLLLSQHPRKGLGLLVDTGLAAHVLPELPALRLESDEHH 265
Query: 245 --------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-------------------- 276
L+ + +A + E D +LR L+ K
Sbjct: 266 RHKDVYEHSLTVLEQAIDLEEDGPDLVLRLAALLHDIGKPRTRRFEKDGRVSFHHHEVVG 325
Query: 277 --SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
+ E+ + + E Y+ ++ +L
Sbjct: 326 AKMTKKRMTELKYSNELVKDVSKLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLERLHK 385
Query: 332 FLALHYNNLTHQDTCFILQ----------VLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + L + L G+++++ + PG
Sbjct: 386 LTRSDCTTRNKRKANALSRTYDGLEERIAQLKEQEELDSIRPDLDGNEIMRILEVGPGPV 445
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+G + + + ++ L++ A
Sbjct: 446 IGKAYGFLLELRLERG-PMERDAAVAALKEWWA 477
>gi|325066341|ref|ZP_08125014.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Actinomyces oris K20]
Length = 459
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 81/457 (17%), Positives = 159/457 (34%), Gaps = 59/457 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76
+ + + +VGG VRD+ + ++ D+D+ T+ P++ +I + +
Sbjct: 3 ALGHAFVRAGHEIALVGGPVRDAFLGVAPHDLDLTTSARPEQTEKILAAWGETTWDVGRA 62
Query: 77 YGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQGK 134
+GTI ++TT R++ G R +V + D RRDFT+NA+ +
Sbjct: 63 FGTIGARKGSTIVEVTTYRTEAYEVGSRKPQVTYGDTLTGDLTRRDFTVNAMALRLPDLE 122
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
++D GGL DL ++ A +D LRI+R RF A G +++ D + A +
Sbjct: 123 LVDPCGGLADLNAGILRTPVSAEQSFDDDPLRIMRAARFAAQLGF-DVEMDVMTAMEEMA 181
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---------------- 238
L+I+S+ER+ +E+ +LL + P + M + G+ + ++
Sbjct: 182 PRLEIVSAERVRAELERLLISPWPRRGLELMVHTGVADVVLPELSALRETVDEHKRHKDV 241
Query: 239 QEISLDQLSQVIEAEQVFEWK---IDSLLRFIVLISWQDKKSILSMAKK----------- 284
E +L L Q I+ E + D +LR ++ K +
Sbjct: 242 YEHTLTVLDQAIDLETGPDGPVPGPDLVLRLAAILHDIGKPATRRFLPDGTVTFHGHDHV 301
Query: 285 -----------FSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLK 330
++ + + Y ++ +L
Sbjct: 302 GARMTAKRLRALRFDKQTIKDVSRLVELHLRFHGYVDAAWSDSAVRRYATDAGPLLERLH 361
Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVV-KYGIPPGK 379
+ + + D+ L G ++ + G+ PG
Sbjct: 362 RLTRADVTTRNRRKAAMLDRAYDDLEERIEALRAAEELAAIRPDLDGGQIMAELGVAPGP 421
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
VG + + ++ LR A+ Q
Sbjct: 422 IVGEAYRFLMDLRMEKG-PIGEDLARQALRSWWAARQ 457
>gi|330470813|ref|YP_004408556.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Verrucosispora maris AB-18-032]
gi|328813784|gb|AEB47956.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Verrucosispora maris AB-18-032]
Length = 486
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 83/456 (18%), Positives = 157/456 (34%), Gaps = 61/456 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +VGG+VRD+L+ +D+D T PD+ + I +
Sbjct: 30 SPVADELGRRFAAAGHELHLVGGSVRDALLGRLGEDLDFCTDAHPDQTLGIVRGWAEAIW 89
Query: 72 PTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T +GTI +ITT R R V + + D RRDFTINA+
Sbjct: 90 ETGREFGTIGCQRDGLRLEITTFRAESYDQVSRNPVVEYGTNLTEDLRRRDFTINAMAVS 149
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ D GGL DL + ++ G +D LR+LR RF A
Sbjct: 150 LPDHRFTDPYGGLADLAAKVVRTPGTPAESFGDDPLRMLRAARFAAQLRFAVHPDVYAAM 209
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ A +++ERI E KLL A +P+ + + + G+ + ++ + L+ + +
Sbjct: 210 TRMAADL-DRITAERIRDEFTKLLCAADPITGLRLLVDTGLAERFLPELTGLKLE-IDEH 267
Query: 250 IEAEQVFEWK--------------IDSLLRFIVLISWQDKKS------------------ 277
+ + V+E D +LR L+ K +
Sbjct: 268 AQHKDVYEHTLTVVRNAISYEQDGPDFILRMAALMHDVGKPATKAVGSDGRVSFHHHEVV 327
Query: 278 ----ILSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAK 328
+ K P++I + + + + + +++ GD ++++
Sbjct: 328 GARLTKARMKALRYPKDITAKVTALVALHLRFYGYGRGEWTDSAVRRYVTDAGD--LLSR 385
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + + + L G+ +++ G+PP
Sbjct: 386 LHKLTRSDCTTRNRRKAAQLAADYDALEERIARIAAEEDLARVRPDLDGNAIMELLGVPP 445
Query: 378 GKKVGNILVHCKQEWINSSFQLS---QEDLHHLLRK 410
G VG + K + + +L R+
Sbjct: 446 GPIVGQAWKYLKDLRLERGPLDRDTAEAELLRWARE 481
>gi|260592681|ref|ZP_05858139.1| polyA polymerase family protein [Prevotella veroralis F0319]
gi|260535451|gb|EEX18068.1| polyA polymerase family protein [Prevotella veroralis F0319]
Length = 474
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 77/455 (16%), Positives = 161/455 (35%), Gaps = 56/455 (12%)
Query: 10 FHDSDLIN-ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
D D+ + I + +K + +VGG VRD + DID+ +V
Sbjct: 12 LLDKDIFHHISNAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVASELKAVLG 71
Query: 69 K--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
K + ++GT ++ + + R + + VV + D RRDFTINA
Sbjct: 72 KKAHLSVFRNFGTAQVKYKHTEVEFVGARRESYSHDSRKPVVEDGTLEDDQNRRDFTINA 131
Query: 127 LYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L +++D G++DL + I+ D +D LR++R RF I
Sbjct: 132 LAVCLNKARFGELVDPFDGVDDLWDGIIRTPLDPDVTFSDDPLRMMRCVRFATQLNFF-I 190
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ + A + + +KI+S ERI E+NK++ P + +Y G+ + I ++
Sbjct: 191 EDETFEALERNAERIKIISGERIEEELNKIMMTPTPSKGFIDLYRCGLLQIILPELVALD 250
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSL 287
+ + + + + + + LR+ L+ K F
Sbjct: 251 VVETRNGRAHKNNFYHTLEVLDNICKHTDNLWLRWAALLHDVGKAMCKRWDAVAGWTFHN 310
Query: 288 PREI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ ++ + + ++ E+
Sbjct: 311 HNYVGAKMVPEIFRRLKLPMDSKMKYVQKQVDLHMRPIVIADEEVTDSAVRRLLNDAGED 370
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY-G 374
+ + L ++T ++ + L + +K + G+++++
Sbjct: 371 IDDLMTLCEADITSKNVARKQRFLDNFRSVRKKLKDLKERDYKRLLQPCIDGNEIMEMFH 430
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ P ++VG + K +++ +E L LLR
Sbjct: 431 LKPSREVGILKQTLKDAVLDNKVPNEREPLMELLR 465
>gi|108802356|ref|YP_642553.1| metal dependent phosphohydrolase [Mycobacterium sp. MCS]
gi|108772775|gb|ABG11497.1| metal dependent phosphohydrolase [Mycobacterium sp. MCS]
Length = 455
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 81/446 (18%), Positives = 159/446 (35%), Gaps = 58/446 (13%)
Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
+ + +VGG+VRD+L+ D+D T P+++ + T I +GT+
Sbjct: 1 MFAEAGHTLYLVGGSVRDALLGRLGTDLDFTTDARPEQMQAFLRPWADALWDTGIEFGTV 60
Query: 81 KIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKV 135
+ +ITT R+D R V + + D +RRDFT+NA+ G+
Sbjct: 61 GVGKAGHRMEITTFRADSYDQVSRNPAVRYGDRLEDDLVRRDFTVNAMAVAITAAGPGEF 120
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
D +GGL LR + + +D LR+LR RF + G + A +
Sbjct: 121 HDPLGGLAALRAKVLDTPSAPEVSFGDDPLRMLRAARFASQLGF-GVAPRVRTAMTEMAP 179
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQVIEAE 253
L ++ ER+ +E++KLL +P+ I M G+ + +V +++D+ Q +
Sbjct: 180 QLSRITVERVAAELDKLLLGADPVTGIDLMVQTGLGDVVLPEVGGMRLAIDEHHQHKDVY 239
Query: 254 QV----------FEWKIDSLLRFIVLISWQDKKSILSM---------------------- 281
E D +LR+ L+ K +
Sbjct: 240 WHSLTVLRQAIDLEDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHHEVVGAKMARKR 299
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF-------YLYGDKVMIAKLKIFLA 334
+ +++ + + + + Y+ ++ +L +
Sbjct: 300 MRALKYSKQMVDDVSQLVFLHLRFHGYGDAKGPGKWTDSAVRRYVTDAGPLLDRLHKLVR 359
Query: 335 LHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKKVGN 383
+ + D+ ++ L G+++++ IP G +VG
Sbjct: 360 ADCTTRNKRRAARLQANYDDLERRIAELAAKEDLQRVRPDLDGNEIMRLLDIPAGPQVGE 419
Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLR 409
H K+ + E + LL+
Sbjct: 420 AWRHLKELRLERGPLSHDEAVDELLK 445
>gi|332878045|ref|ZP_08445775.1| HDIG domain protein [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332684007|gb|EGJ56874.1| HDIG domain protein [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 493
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 74/452 (16%), Positives = 158/452 (34%), Gaps = 56/452 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + ++ + +VGG VRD + QDIDI T + + + + +
Sbjct: 20 QISEVADEQGVECYVVGGYVRDLFLERPSQDIDIVTVGSGIALAKALAGRLGRGAHLSVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
++GT ++ + ++ R + + VV + D RRDFTINAL +
Sbjct: 80 SNFGTAQVKFKGMEVELVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINALAVCLNRE 139
Query: 135 VI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
D G+ D+ +R ++ D +D LR++R RF ID + A
Sbjct: 140 RFGELVDPFDGVWDMEDRLVRTPLDPDITFSDDPLRMMRCVRFATQLNFY-IDEETFEAL 198
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----------Q 239
+ ++ +KI+S ERI E+NK++ P V + G+ IF ++ +
Sbjct: 199 ERNRERIKIISRERIADELNKIMMTPTPSKGFVELARCGLLPLIFPELAAMEGVEKVNGR 258
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL------------ 287
+ + + + + LR+ L+ K
Sbjct: 259 AHKDNFYHTLEVLDNICRHTDNLWLRWAALLHDIGKPRTKRFDPVAGWTFHNHNFIGAKM 318
Query: 288 -----------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
E ++ + ++ E+ ++ + L
Sbjct: 319 VPDIFRKMKLPMNEKMKYVQKMVELHMRPIVIADEEVTDSAVRRLLFEAGDDIEDLMTLC 378
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++ + L + + P++G++++ +G+ P ++VG
Sbjct: 379 EADITSKNAQRKQRFLDNFKLVRRKLVDLEERDRVRNFQPPVSGEEIMAVFGLSPCREVG 438
Query: 383 NILVHCKQEWINSSFQLSQEDL-HHLLRKLIA 413
++ K ++ + +LR+
Sbjct: 439 SLKSAIKDAILDGVVPNEHDAAYEFMLRRAAK 470
>gi|227494171|ref|ZP_03924487.1| tRNA nucleotidyltransferase [Actinomyces coleocanis DSM 15436]
gi|226831905|gb|EEH64288.1| tRNA nucleotidyltransferase [Actinomyces coleocanis DSM 15436]
Length = 489
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 85/454 (18%), Positives = 157/454 (34%), Gaps = 59/454 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++I++ + + + +VGG VRD+ ++L+ D D+ T PD + K
Sbjct: 31 KEIIDLGHVFAEAGYELALVGGPVRDAFLSLTPHDFDLTTNARPDTTEGLLEKWGAATWA 90
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130
++GTI + +ITT R++ G R V + + D RRDFT+NA
Sbjct: 91 VGKAFGTIGGRKNQLTVEITTYRTEAYEVGSRKPVVEYGDTLEGDLTRRDFTVNACAITL 150
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K++D GL DL N ++ A +D LRI+R RF A G ++ D + A
Sbjct: 151 PDLKLVDPHNGLQDLANGVLRTPVSATQSFDDDPLRIMRAARFAAQLGI-DVSEDVIAAM 209
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-------- 242
+ L+I+S+ERI +E+ +L+ + P + M G+ + + +
Sbjct: 210 EEQAHRLEIVSAERIRAELERLIISPYPRRGLELMVYTGVCDIVLPEFSALRETVDEHNR 269
Query: 243 -----------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK--------------- 276
LD+ + D LRF L+ K
Sbjct: 270 HKDVYEHTLTVLDRAIALETDADGPVPGPDFTLRFAALMHDIGKPATRKFEADGTVSFHH 329
Query: 277 -------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
K ++ + + Y+ ++
Sbjct: 330 HDYVGAKMTRKRMKALKFDKQTTEDVSELVKLHLRFHGYGDQSWTDSAVRRYVADAGHLL 389
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGI 375
L + ++ +D+ L G ++++ G+
Sbjct: 390 EYLHRITKADCTTRNRRKALYLETAYADLEKRISELKAQEELDSIRPDLDGSEIMELLGL 449
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
PG +VG + + + L +E LL+
Sbjct: 450 TPGPEVGKAYKYLLELRMEHG-PLGKEKAAELLK 482
>gi|224025809|ref|ZP_03644175.1| hypothetical protein BACCOPRO_02551 [Bacteroides coprophilus DSM
18228]
gi|224019045|gb|EEF77043.1| hypothetical protein BACCOPRO_02551 [Bacteroides coprophilus DSM
18228]
Length = 477
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 75/448 (16%), Positives = 157/448 (35%), Gaps = 56/448 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTSI 75
I ++ + VGG VRD +N +DIDI + + F K + +
Sbjct: 15 ISKTADEMGLECYAVGGYVRDIFLNRPSKDIDIVVVGSGIEIAQAFGKKLGRGAHVSVFK 74
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-- 133
++GT ++ + R + + +V + D RRDFTINA+
Sbjct: 75 NFGTAQVKYHDTEVEFVGARKESYSHDSRKPIVENGTLEDDQNRRDFTINAMAVCLNQAR 134
Query: 134 --KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+++D GG+ DL+ R I+ D +D LR++R RF I+ + A
Sbjct: 135 FGELVDPFGGMEDLKERIIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-IEDETFAALE 193
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----------QE 240
+ K+ +KI+S ERI E+NK+L + P V + G+ + IF ++ +
Sbjct: 194 RNKERIKIISRERIADELNKILLSPIPSKGFVELDRCGLLELIFPELTALQGVEVRNGRA 253
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL------------- 287
+ + + + + + LR+ L+ K K
Sbjct: 254 HKDNFYHTLEVVDNISKVSNNLWLRWATLLHDIGKPRTKRWEPKIGWTFHNHNFIGEKMI 313
Query: 288 ----------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
E ++ + ++ + + + L
Sbjct: 314 PDIFRKMKLPMNEKMKYVQKLVGLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMMLCE 373
Query: 338 NNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVGN 383
++T ++ + L + + P+ G ++++ + + P +++G+
Sbjct: 374 ADITSKNEARKQRFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGAEIMRVFNLEPCREIGS 433
Query: 384 ILVHCKQEWINSSFQLSQEDLHHL-LRK 410
+ K ++ + L+K
Sbjct: 434 LKSSIKDAILDGVIPNEHDAAFEYMLKK 461
>gi|288803036|ref|ZP_06408472.1| polyA polymerase family protein [Prevotella melaninogenica D18]
gi|288334553|gb|EFC72992.1| polyA polymerase family protein [Prevotella melaninogenica D18]
Length = 474
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 76/456 (16%), Positives = 163/456 (35%), Gaps = 56/456 (12%)
Query: 10 FHDSDLIN-ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
D D+ + I + +K + +VGG VRD + DID+ +V
Sbjct: 12 LIDKDIFHHISTAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVASELKAILG 71
Query: 69 K--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
K + ++GT ++ R + R + + +V + D RRDFTINA
Sbjct: 72 KKAHLSVFRNFGTAQVKYRNIEVEFVGARKESYSHDSRKPIVEDGTLEDDQNRRDFTINA 131
Query: 127 LYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ +++D GG++DL + I+ D +D LR++R RF I
Sbjct: 132 MAVCLNKARFGELVDPFGGIDDLWDGIIRTPLDPDVTFSDDPLRMMRCVRFATQLNFF-I 190
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ + A + + +KI+S ERI E+NK++ P + +Y G+ + I ++
Sbjct: 191 EDETFEALERNAERIKIISGERIEEELNKIMMTATPSKGFIELYRCGLLQLILPELVALD 250
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSL 287
+ + + + + + + LR+ L+ K F
Sbjct: 251 VVDTRNGRAHKNNFYHTLEVLDNICKHTDNLWLRWSALLHDVGKAKCKRWDATVGWTFHN 310
Query: 288 PREI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ ++ + + ++ E+
Sbjct: 311 HNFVGAKMVPTIFRRLKLPMDSKMKYVQKQVDLHMRPIAIADEEVTDSAVRRLMNDAGDD 370
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY-G 374
+ + L ++T ++ + L + ++ + G+++++
Sbjct: 371 IDDLMTLCEADITSKNAVRKQRFLDNFRIVREKLKDLKDRDYKRLLQPCVDGNEIMEMFN 430
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ P ++VG + K +++ +E L LLR+
Sbjct: 431 LKPSREVGVLKKTLKDAVLDNKVPNEREPLLALLRE 466
>gi|119718898|ref|YP_925863.1| HDIG domain-containing protein [Nocardioides sp. JS614]
gi|119539559|gb|ABL84176.1| HDIG domain protein [Nocardioides sp. JS614]
Length = 483
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 82/461 (17%), Positives = 164/461 (35%), Gaps = 61/461 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ ++ + + +VGG VRD+++ D+D T+ P++ + V
Sbjct: 26 APVIDDLGERFTQAGHELALVGGPVRDAMLGRQHNDLDFTTSARPEQTEALLKGWADAVW 85
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
++GTI + +ITT RS+ D R V F D RRDFT+NA+
Sbjct: 86 DMGRAFGTIGCRKGEWQVEITTYRSEAYDPDSRKPTVDFGDTLAGDLGRRDFTVNAMAVR 145
Query: 131 QQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
G+ + D GG+ DL R ++ G +D LR++R RF A G +D + A
Sbjct: 146 VPGRELEDPYGGVVDLAERVLRTPGRPEDSFSDDPLRMMRAARFAAQLGF-GVDPAVVAA 204
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
++I+S+ER+ E+ KL+ A P + + + G+ + ++ ++L++
Sbjct: 205 MTAMAGRIEIISAERVRDELVKLVCAPYPRLGLRLLVDTGLAALVLPELPALALERDEHH 264
Query: 250 IEAE-----------------QVFEWKIDSLLRFIVLISWQDKK---------------- 276
+ ++ D + RF L+ K
Sbjct: 265 RHKDVYEHTLTVLEQAIDLESRLPGGGPDFVTRFAALMHDVGKPRTRRFIDDGTVTFHHH 324
Query: 277 ------SILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYLYGDKVM 325
+ + + + + +++ GD+
Sbjct: 325 DVVGAKMTRKRMRALRFSNDETDAVTKLVELHLRFHGYGTGEWTDSAVRRYVRDAGDQ-- 382
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDII----------HWKKPLFPLTGDDVVK-YG 374
+ +L + + + + D+ L G+ +++ G
Sbjct: 383 LGRLHVVTRADCTTRNQRKADRLRRTYDDLEARIARLSEQEELDALRPDLDGNQIMEILG 442
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
I PG++VG + + ++ +E LL + AS
Sbjct: 443 IGPGREVGAAYQYLLELRMDRGPMAEEEARAALL-EWAASR 482
>gi|319903055|ref|YP_004162783.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Bacteroides helcogenes P 36-108]
gi|319418086|gb|ADV45197.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Bacteroides helcogenes P 36-108]
Length = 482
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 74/461 (16%), Positives = 161/461 (34%), Gaps = 59/461 (12%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+F D +I + ++ + VGG VRD + +DID+ + +
Sbjct: 12 FFSDDIFKSISATADELGLECYAVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGRRLG 71
Query: 69 K--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + ++GT ++ R + R + T +V + D RRDFTINA
Sbjct: 72 RGAHVSVFKNFGTAQLKYRGVEVEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTINA 131
Query: 127 LYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L +++D GG+ D++ RTI+ D +D LR++R RF I
Sbjct: 132 LAVCLNRARYGELVDPFGGMQDMKERTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-I 190
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
D + + ++ + I+S ERI E+NK++ + P + + G+ + IF ++
Sbjct: 191 DDGTFDSLCRNRERISIISKERIADELNKIILSPIPSRGFIDLDRCGLLELIFPELVALQ 250
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL---- 287
+ + + + + + + LR+ L+ K +
Sbjct: 251 GVETRNGRAHKDNFYHTLEVLDNICKNTDNLWLRWAALLHDIAKPVTKRWEPRVGWTFHN 310
Query: 288 -------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
E ++ + + ++ +
Sbjct: 311 HNFIGEKMIPNIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDD 370
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YG 374
+ + L ++T ++ + L + + P++G++++K +G
Sbjct: 371 IDDLMILCEADITSKNVERKKRFLDNFQLVRRKLKDLEERDRVRNFQPPVSGEEIMKTFG 430
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
+ P ++VG + K ++ E K+
Sbjct: 431 LSPCRQVGVLKSAIKDAILDGIIPNEYEAARSFMLQRAEKM 471
>gi|305681647|ref|ZP_07404453.1| tRNA adenylyltransferase [Corynebacterium matruchotii ATCC 14266]
gi|305658807|gb|EFM48308.1| tRNA adenylyltransferase [Corynebacterium matruchotii ATCC 14266]
Length = 506
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 87/468 (18%), Positives = 161/468 (34%), Gaps = 67/468 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + + N +VGG+VRD+L+ D+D T P+ ++ I
Sbjct: 22 PIIQPLAAEFNTRGHHLYLVGGSVRDALLGRLGNDVDFTTDARPETILEILEHFADITWD 81
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130
T I YGT+ + +ITT RSD + R +VVF D +RRDFTINA+ +
Sbjct: 82 TGIEYGTVSAEKSGQQIEITTFRSDIYDGESRNPEVVFGDTLAGDLVRRDFTINAMAVEI 141
Query: 131 -------------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
+ + D +GG DL I +D LR+LR RF +
Sbjct: 142 TSAPDAAGATPAAAELEFFDPMGGFADLMKGVIDTPAAPDQSFADDPLRLLRAARFSSQL 201
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G + A ++ ++ ER+ E++K+L P I M G+ +F +
Sbjct: 202 GF-TVSDRVRAAMTDLASEIQRITVERVQVELDKMLLGAQPWLGIDLMVTTGLADYVFPE 260
Query: 238 VQEISLDQLSQVIEA--------------EQVFEWKIDSLLRFIVLISWQDKKS------ 277
+ + L Q +Q + D +LR+ L+ K
Sbjct: 261 LPRLQLAQDEHHQHKDVYAHSLQVLRQAMDQEAAGEPDLVLRWAALVHDIGKPDTREFTE 320
Query: 278 ----------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFY 318
+ + +K + + + + S + Y
Sbjct: 321 DGRVSFHQHEVVGAKLVRNRMRKLKYSKAMVRDVSQLVYLHMRFHGFSEGQWTDSAVRRY 380
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGD 368
+ ++ +L + + ++ Q+ + + K L G
Sbjct: 381 VTDAGDLLPRLHKLVRADCTTRNKRKAAWLRQMYAQLEERIADLAAKEDLAKVRPDLDGK 440
Query: 369 DVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+++ G+ PG VG + K+ + L +++ +L A
Sbjct: 441 EIMAILGLQPGPDVGEAWSYLKEVRLERG-PLDRDEAIKVLTTWWADR 487
>gi|325294588|ref|YP_004281102.1| polynucleotide adenylyltransferase region [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065036|gb|ADY73043.1| Polynucleotide adenylyltransferase region [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 881
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 88/417 (21%), Positives = 163/417 (39%), Gaps = 23/417 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I ++ + IVGG VRD ++ D+DI + +K + T
Sbjct: 468 IKKIGEFADEFGVNAYIVGGFVRDLILGRKNFDVDIVIEGDATEFAKKVAKKANAKVHTF 527
Query: 75 ISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ T ++ D + R+++ V K D +RRDFTIN L
Sbjct: 528 ERFKTATVVFPDGFRIDFASARTEVYKAPGALPEVDMAPLKKDLMRRDFTINTLAIKLNK 587
Query: 134 KV----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-GEKNIDSDGLV 188
K ID+ GGL D+++R I+ + +ED RILR RF Y E ++ L+
Sbjct: 588 KEFGKLIDFFGGLRDIKDRKIRILH--SLSFVEDPTRILRALRFATRYRFELGKHTEKLL 645
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----QEISL 243
+K K + +RI+ E+ ++ NPL + + + IF + ++
Sbjct: 646 KIAVQRKLFKTVEGQRIYHELKQIFLEDNPLRVVNKLAYYKVLSSIFPTIVWDKKKKDLF 705
Query: 244 DQLSQVIEAEQVFEWKIDS---LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI-SFF 299
+++ +VI ++ + + LL F L+ Q + I + S+P + R L
Sbjct: 706 ERIRKVIIWHKLNFQEKEIRYDLLYFGALLIGQSFQKIDTYLDNLSVPEKDREILKEILL 765
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
++ K ++ Y + L +L ++ ++L + W+
Sbjct: 766 KASYLLKEVNKERKNSEIYKLVSRFKEEVLLFAASL------TEEEWKREKILEYLKSWR 819
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+TGD++ G+ PG IL K I+ +E ++ LI +
Sbjct: 820 FTKPAVTGDNLKAIGLKPGPIFREILNELKYRLIDKEIPEDKEKQLDFVKFLIKEEE 876
>gi|300770908|ref|ZP_07080785.1| polyA polymerase [Sphingobacterium spiritivorum ATCC 33861]
gi|300762181|gb|EFK59000.1| polyA polymerase [Sphingobacterium spiritivorum ATCC 33861]
Length = 472
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 76/461 (16%), Positives = 155/461 (33%), Gaps = 62/461 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFSKTRY 68
I L + + ++GG VRD +M + D+DI +
Sbjct: 5 LQHPIFSLIKDLAQQTSTECYVIGGYVRDRIMGRPFKNDVDIVVIGSGIEFADKLGEKLN 64
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ S+GT ++ + R + +V + D RRDFTINA+
Sbjct: 65 TKVTVYKSFGTAMLVYDGLNVEFVGARKESYRSDSRKPIVENGTLEDDQNRRDFTINAMA 124
Query: 129 ADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
D G+ D+ R I+ +D LR++R RF + G ID
Sbjct: 125 YSLNAHNYGALLDPFNGIEDIAQRIIRTPLAPQETFSDDPLRMMRAIRFASQLGF-KIDI 183
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-------- 236
+ A ++ + I+S ERI E+NK++ ++ P ++++ G+ + IF
Sbjct: 184 HTIEAIYNTRERISIISKERITDELNKIILSEKPSVGFKYLFDTGLLELIFPAMYQLHGV 243
Query: 237 ---DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE--- 290
+ + + + + V E+ D LR+ ++ K + KK
Sbjct: 244 DVVEGKGHKDNFYHTLEVLDNVAEYSDDLWLRWAAIMHDIAKPATKRFDKKLGWTFHGHE 303
Query: 291 -------------------------IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
+ L+ + ++ +++L + G+
Sbjct: 304 DKGARMVPKLFAELKLPLHDKMKFVQKLVLLHLRPIVLAKDIVTDSAVRRLLFEAGND-- 361
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVL----------SDIIHWKKPLFPLTGDDVVK-YG 374
I L + + + + P+TG+D++ +
Sbjct: 362 IDALMLLCHADVTTKNEYKKKKYRENFELVKQKLKDVEERDQIRNWQPPITGEDIMTVFN 421
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
+ PG++VG I ++ + S+E +++
Sbjct: 422 LGPGREVGKIKNAIREAILEGDITNSKEQAYYFMLEQAKQM 462
>gi|154498343|ref|ZP_02036721.1| hypothetical protein BACCAP_02332 [Bacteroides capillosus ATCC
29799]
gi|150272654|gb|EDM99832.1| hypothetical protein BACCAP_02332 [Bacteroides capillosus ATCC
29799]
Length = 392
Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 94/396 (23%), Positives = 159/396 (40%), Gaps = 19/396 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ + + L ++ VGG VRD L+ + D D+ T+ +P+ V+ +F + +PT
Sbjct: 13 VAALCARLRSAGWEAYPVGGCVRDLLLGRTPGDWDVTTSAMPEEVIALFD----RTVPTG 68
Query: 75 ISYGTIKIICRKKYFDITTLR-SDLITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ ++TT R DGR+ V F D D RRDFTINA+
Sbjct: 69 IRHGTVTVLTEDGGVEVTTFRAESGYADGRHPDAVTFGGDLTGDLTRRDFTINAMALGPD 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G VID GG DL+ R I+ +G+ R ED LR+LR RF A G +++ A
Sbjct: 129 GAVIDPFGGQKDLQARLIRCVGEPGRRFREDALRMLRAVRFSAQLGF-AVENATAEALRD 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ LS+ERI +E+ K+L ++ P ++ G+ + L L +V
Sbjct: 188 NAELTACLSAERIRTELEKILLSQWPERG-EGLFAWGLLAAFVGADAQPDLTTLHRVPAR 246
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ +LL D+ SI S + R + + KT+ P
Sbjct: 247 PLERWAALCALL--------LDEGSIRSAEEFLKDLRLDGRTVRACAAGAELVKTM--PR 296
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + A+ + + + + L++ L+G ++
Sbjct: 297 GAAGWRHALAEHGADACTAAAAIGAAMMGGEYLRELAETLAEGSCLTVRELALSGAELAA 356
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G G +G ++ E L LL
Sbjct: 357 MGYR-GADIGAAQRRLLDHVLDHPEDNRPERLRELL 391
>gi|229822681|ref|YP_002884207.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Beutenbergia cavernae DSM 12333]
gi|229568594|gb|ACQ82445.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Beutenbergia cavernae DSM 12333]
Length = 483
Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 86/456 (18%), Positives = 149/456 (32%), Gaps = 61/456 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+D+ + L G + +VGG VRD+ + D+D AT+ P++ I ++ V
Sbjct: 24 AADVDPLGDLFAAGGHEIALVGGPVRDAFLGRGSSDLDFATSARPEQTEAILARWGDAVW 83
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD 130
++GTI ++TT R++ G R V + D RRDFTINA+
Sbjct: 84 DVGRAFGTIGAGRGDVVVEVTTYRTEAYDAGSRKPAVEYGDTLDGDLSRRDFTINAMAVR 143
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+D GL+DL ++ A +D LR++R RF A ++ D + A
Sbjct: 144 LPDLTFVDPHHGLDDLAAHVLRTPVSAEQSFDDDPLRMMRAARFAAQL-RVDVAPDVMAA 202
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------- 238
L I+S+ER+ +E+ KLL A P + M G+ + ++
Sbjct: 203 MTAMAGRLAIVSAERVQAELTKLLLAPAPRRGLELMVETGLADVVLPELPAMKLEIDEHH 262
Query: 239 -----QEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM--------- 281
E SL L Q I+ E + D +LR L+ K +
Sbjct: 263 RHKDVYEHSLTVLDQAIDLETGPDGPVPAPDLVLRLAALLHDVGKPATRRNEPGGRVSFH 322
Query: 282 -------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVM 325
+ + + + Y+
Sbjct: 323 HHEVVGAKLARKRLAALRYDKATIADVTTLIALHLRFHGYGDGAWTDSAVRRYVTDAGPE 382
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YG 374
+ +L + + D+ L G ++ G
Sbjct: 383 LERLHRLTRADCTTRNRRKAERLSHAYDDLERRIAELAEKEELAAIRPDLDGAAIMATLG 442
Query: 375 IPPGKKVGNILVHCKQEWIN-SSFQLS--QEDLHHL 407
I PG VG + + + + +L
Sbjct: 443 IGPGPVVGEAYRFLLELRMERGPVEPDVARAELLAW 478
>gi|295104303|emb|CBL01847.1| tRNA nucleotidyltransferase/poly(A) polymerase [Faecalibacterium
prausnitzii SL3/3]
Length = 444
Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 94/425 (22%), Positives = 160/425 (37%), Gaps = 54/425 (12%)
Query: 35 AVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTL 94
VRDSL+ + D D+ T+ LP +VM +F + IPT + +GT+ I + ++ TT
Sbjct: 29 CVRDSLLGRTAHDWDLCTSALPQQVMELFGTE--QCIPTGLQHGTVTIKYGGQLYETTTF 86
Query: 95 RSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKF 152
R++ TDGR+ F D + D RRDFTINA+ + ++D GG DL+N ++
Sbjct: 87 RTEGSYTDGRHPDEVQFVPDVREDLARRDFTINAMAYNAAEGLVDPFGGQKDLQNGLLRA 146
Query: 153 IGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKL 212
+G+ R ED LRILR +RF A +G + A A I + E+ KL
Sbjct: 147 VGEPQQRFTEDALRILRLYRFAARFGFALDAATARAARQLAPHLDCISAERIQ-EELAKL 205
Query: 213 LEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW 272
L A P + + + ++ +L+ V++A E + +R+ L+
Sbjct: 206 LAAPQPGAYLE----PAVLAVVLPELTPAALEAAKPVVDACPAGEENLP--VRWAALLGA 259
Query: 273 QDKKSILSMAKKFSLPREIRYFLISFFN-------------------------------- 300
+ + K+
Sbjct: 260 LGESDTRRVLKRLRCSNACIEETAVLVRETAGEGVCGSFLLGHESGHSIARPTACGSRVP 319
Query: 301 ---------CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH--YNNLTHQDTCFIL 349
+ S I++L YG + + AL
Sbjct: 320 PQRTVLGETPAHAPERASDIHIRQLLGRYGLCTVERLCALCAALRPQAAPACALAAQRAR 379
Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
Q+ +D + + + G D++ GIP G + +L I + + + L +
Sbjct: 380 QLEADGVCCRVSQLAVNGRDLMAAGIPAGPALRRVLEALLDGVIRAEYPNEKPALLAAAQ 439
Query: 410 KLIAS 414
K+IAS
Sbjct: 440 KIIAS 444
>gi|237745324|ref|ZP_04575805.1| poly(a) polymerase [Fusobacterium sp. 7_1]
gi|229432553|gb|EEO42765.1| poly(a) polymerase [Fusobacterium sp. 7_1]
Length = 442
Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 101/432 (23%), Positives = 184/432 (42%), Gaps = 44/432 (10%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I IL+ LNK K IVGGA+RD L+ L +D+D T + + + +IFS+ K T
Sbjct: 14 IKILNKLNKCG-KGYIVGGAIRDILLGLKPKDVDFTTNLPYETLKKIFSEYTPK--ETGK 70
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
S+G ++I ++I R D+ G+ KV F D + D RRDFTINA+ ++ +
Sbjct: 71 SFGVLRIRINNIDYEIAKFRKDI--YGKEKKVSFVDDIRNDLARRDFTINAMAYNEIDGI 128
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
ID GG D+ N+ I F+G+ RI+ED LR+LR FRF + ++ + + A K
Sbjct: 129 IDLYGGQKDIENKIINFVGNVEERIIEDPLRVLRAFRFMSRLNF-SLSENTIEAIKNQKS 187
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
LK + ERI E +KLL N N + M + G+ + I + + +
Sbjct: 188 LLKNIPEERINMEFSKLLLGDNIKNTLTLMKDTGVLELIIPEFKATYDFNQCNPHHNLDL 247
Query: 256 FEW--------KIDSLLRFIVLISWQ----------------------DKKSILSMAKKF 285
F D LR+ L+ + +
Sbjct: 248 FNHIINVVSKVPADLELRYSALLHDMAKPIVQIFDEEGIAHYKTHEIVGADMARDILTRL 307
Query: 286 SLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344
LP ++ ++ + K ++ + KL G ++ ++ +A + +
Sbjct: 308 KLPVKLIDTVVEIIKKHMVLYKDITDKKFNKLLSEMGYDNLLRLIEHSIADNSSKNNEVV 367
Query: 345 T------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398
+ + + + + + G D+++ G GK++G I ++++ Q
Sbjct: 368 STENDLHERLKRAVEKQMQVTVNDLAINGKDLIELGF-NGKEIGEIKKELLDKYLSEEIQ 426
Query: 399 LSQEDLHHLLRK 410
++E++ +++
Sbjct: 427 NNKEEMMEYVKE 438
>gi|326799830|ref|YP_004317649.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Sphingobacterium sp. 21]
gi|326550594|gb|ADZ78979.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Sphingobacterium sp. 21]
Length = 469
Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 78/454 (17%), Positives = 163/454 (35%), Gaps = 54/454 (11%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFSKTRY 68
+ +L N+ + ++GG VRD LM + DIDI K
Sbjct: 5 LQLPVFETLSNLANQYNTEIYVIGGYVRDRLMKRPFKNDIDILVIGSGIEFAEKVGKHLN 64
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ ++GT + + + R + +V + D RRDFT+NA+
Sbjct: 65 TKVSVFKNFGTAMLRYDQIDIEFVGARKESYRRDSRKPIVENGSLEDDQKRRDFTVNAMA 124
Query: 129 A----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
G+++D G+ D++ RTI+ + +D LR++R RF + + I S
Sbjct: 125 LSLNKQNFGELLDPFNGVKDIQIRTIRTPLEPEATFSDDPLRMMRAIRFASQL-QFKISS 183
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-------- 236
A ++ +KI+S ERI E+NK++ +K P ++++ G+ + IF
Sbjct: 184 PTFNAIKSQRERIKIISKERITDELNKIICSKKPSIGFNYLFDTGLLELIFPLMTQLYGV 243
Query: 237 ---DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP----- 288
D + + + + + E D LR+ ++ K + KK
Sbjct: 244 EIIDGKGHKDNFYHTLEVVDNIAEVTDDLWLRWAAILHDIAKPATKRFDKKQGWTFHGHE 303
Query: 289 ------------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330
+ F+ + L+ + +
Sbjct: 304 DRGARMVPKIFADLKLPLNDRMKFVQKLVLLHLRPIVLAKDVVTDSAVRRLLFEAGDDID 363
Query: 331 IFLALHYNNLTHQDTCFILQVLSDII-------------HWKKPLFPLTGDDVV-KYGIP 376
+ L + ++T ++ + + + P++G+D++ + +
Sbjct: 364 SLMKLCHADVTTKNEYKRKKYRDNFELVKQRIKDVEERDQIRNWQPPVSGEDIMRSFNLR 423
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
PG +VG I ++ + + ++E+ + K
Sbjct: 424 PGPEVGIIKKAIREAILEGDIKNNREEALAYMEK 457
>gi|153005214|ref|YP_001379539.1| tRNA cytidylyltransferase [Anaeromyxobacter sp. Fw109-5]
gi|152028787|gb|ABS26555.1| tRNA cytidylyltransferase [Anaeromyxobacter sp. Fw109-5]
Length = 434
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 99/416 (23%), Positives = 160/416 (38%), Gaps = 28/416 (6%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMN--LSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++++L L +S +VGGAVRD L++ D D+AT LP++V +F KVI
Sbjct: 15 PVLHVLRRLGDAGYRSWLVGGAVRDLLLHRARDANDFDVATPALPEQVAALFP----KVI 70
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW--KADSLRRDFTINALYA 129
PT I +GT+ ++ + ++TT R + T +AD RRDFTINAL
Sbjct: 71 PTGIEHGTVTVLVGGEPIEVTTFRGEGEYKDGRRPESVTFHEDLEADLARRDFTINALAL 130
Query: 130 DQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D G++ D GG DLR R I+ +GD R ED LR +R RF A G +
Sbjct: 131 DPLAGELRDPFGGEADLRRRLIRAVGDPVARFGEDGLRPMRAVRFAAQLGYSLDPATEEA 190
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+S ERI E+ +L+ A + A+ M G+ + + +L
Sbjct: 191 IRGALPIVR-KVSRERIADELTRLVVAPDAPRAVDLMRTTGLLATVLPALAGRPERELDH 249
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ--- 305
+ + LR L+ + + L R I + + +
Sbjct: 250 AVAVLAA--TPGEPALRLAALLHALPAEDVGRTLLDLRLSRRISDETAALVRAHVCRLDG 307
Query: 306 ---KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY---------NNLTHQDTCFILQVLS 353
S ++++ G L++ A H + I ++
Sbjct: 308 SRALPASPADVRRWLSAAGPARAPLLLELARAEAAAMGAQVGGDQRAVHALSEAIARIRR 367
Query: 354 DIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ L G V++ G PG VG L H + + + + L L
Sbjct: 368 ERDPLTPQDLALDGRAVMRILGAGPGPHVGEALRHLLERVLAEPRENDEARLTEAL 423
>gi|222151352|ref|YP_002560508.1| hypothetical protein MCCL_1105 [Macrococcus caseolyticus JCSC5402]
gi|222120477|dbj|BAH17812.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 410
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 82/399 (20%), Positives = 152/399 (38%), Gaps = 20/399 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I+ L K IVGGA+R+ LM + V DIDI T LP++++RIF + IP
Sbjct: 23 AFAIIETLESYGYKGYIVGGAIRNLLMGIPVNDIDITTDCLPEQMIRIFE----RTIPVG 78
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ F++TT R + R V F K D RRDFT+NA+ AD +
Sbjct: 79 IEHGTVIVLIEDFPFEVTTFREDGEYKDHRRPDSVNFVTSLKVDLERRDFTVNAIAAD-K 137
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++ DY G + +R I+ +GD R ED LRI+R RF + +
Sbjct: 138 YQLYDYFDGKKHIEDRLIQAVGDPALRFEEDALRIIRALRFMSVLDFQIEQETLENMKQS 197
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
A+ + I + KLL N ++ + GI + +
Sbjct: 198 AQYLEAVSIERIIIE-LCKLLSGVNVTRSLKLFFELGINCY---------IPFFKDMKPY 247
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ + + + Q L K + + I+ +
Sbjct: 248 IVTQPIRLYEYISSYIFLHDQTLSQKLPQLKLSNAEKRNIKETITLLHHLVEGDRTIEYL 307
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + + + + + + N D + ++ + + + G +++
Sbjct: 308 LYHFGLDFFKRTLSLAKAVNIEALHINYKAYDEKSLSEIYDGLPIHSRESLAINGTILME 367
Query: 373 YGIPP--GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
Y G + +IL + +++ Q ++ L +
Sbjct: 368 Y-YKRNGGPWIKDILGITENAVLHNEVQNTKNTLLEWID 405
>gi|167629951|ref|YP_001680450.1| tRNA nucleotidyltransferase/poly(a) polymerase [Heliobacterium
modesticaldum Ice1]
gi|167592691|gb|ABZ84439.1| tRNA nucleotidyltransferase/poly(a) polymerase [Heliobacterium
modesticaldum Ice1]
Length = 891
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 76/418 (18%), Positives = 146/418 (34%), Gaps = 20/418 (4%)
Query: 13 SDLINILS----LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
++++ L + + +VGG VRD L+ ++ DID+ ++
Sbjct: 465 PHILDLFDDVGRLADGEGVQVYVVGGFVRDLLLGVNNLDIDLVVEGDGICFATELARFLK 524
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ T +GT I + D+ T R + V D + D RRDFTINAL
Sbjct: 525 GTLRTHEKFGTAVIRWGDQKIDVATARREFYQYPAALPQVEASDLRQDLYRRDFTINALA 584
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEK-NIDSD 185
+ + + + + +ED RILR RF YG +
Sbjct: 585 IRLNRERFGELVDFFQGVKDLEQGLVRVLYNLSFVEDPTRILRAIRFEQRYGFTIEPQTM 644
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----QE 240
G A++ ++ LS ER+ E+ +L +NP A+ + G+++ + + E
Sbjct: 645 GFAREAIARQMIRELSYERMVDELILILSEENPAPALRRLTELGLWEYLLPGLVWTPWVE 704
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+ + + +++A + + S+ + + F
Sbjct: 705 VEVSAVPSMLKALAEAGLPVPQRPWVVYFYILARHLSMEGVCFVNDHYPLKQVMRDDLFK 764
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL----QVLSDII 356
+ K + +L GD + I + F L ++
Sbjct: 765 LH---KEGKDTNQALMNWLRGDDPLSRLESILRDWSEEAILALRAGFSLPDTVRLFEAWR 821
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++ LTG+D+ IPPG IL ++E ++ +R+L+
Sbjct: 822 RIRETRPCLTGNDLKALKIPPGPIYARILNRLRRERLDGRL-TDAGAERDFVRRLLQE 878
>gi|227537511|ref|ZP_03967560.1| tRNA adenylyltransferase [Sphingobacterium spiritivorum ATCC 33300]
gi|227242648|gb|EEI92663.1| tRNA adenylyltransferase [Sphingobacterium spiritivorum ATCC 33300]
Length = 472
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 76/461 (16%), Positives = 155/461 (33%), Gaps = 62/461 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFSKTRY 68
I L + + ++GG VRD +M + D+DI +
Sbjct: 5 LQHPIFSLIKDLAQQTSTECYVIGGYVRDRIMGRPFKNDVDIVVIGSGIEFADKLGERLN 64
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ S+GT ++ + R + +V + D RRDFTINA+
Sbjct: 65 TKVTVYKSFGTAMLVYDGLNIEFVGARKESYRSDSRKPIVENGTLEDDQNRRDFTINAMA 124
Query: 129 ADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
D G+ D+ R I+ +D LR++R RF + G ID
Sbjct: 125 YSLNAHNYGALLDPFNGIEDIEQRVIRTPLAPQETFSDDPLRMMRAIRFASQLGF-KIDI 183
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-------- 236
+ A ++ + I+S ERI E+NK++ ++ P ++++ G+ + IF
Sbjct: 184 HTIEAIYSTRERISIISKERITDELNKIILSEKPSVGFKYLFDTGLLELIFPAMYQLHGV 243
Query: 237 ---DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE--- 290
+ + + + + V E+ D LR+ ++ K + KK
Sbjct: 244 DIVEGKGHKDNFYHTLEVLDNVAEYSDDLWLRWAAIMHDIAKPATKRFDKKLGWTFHGHE 303
Query: 291 -------------------------IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
+ L+ + ++ +++L + G+
Sbjct: 304 DKGARMVPKLFAELKLPLHDKMKFVQKLVLLHLRPIVLAKDIVTDSAVRRLLFEAGND-- 361
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVL----------SDIIHWKKPLFPLTGDDVVK-YG 374
I L + + + + P+TG+D++ +
Sbjct: 362 IDALMLLCHADVTTKNEYKKKKYRENFELVKQKLKDVEERDQIRNWQPPITGEDIMTVFN 421
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
+ PG++VG I ++ + S+E +++
Sbjct: 422 LGPGREVGKIKNAIREAILEGDITNSKEQAYYFMLEQAKQM 462
>gi|283779836|ref|YP_003370591.1| tRNA adenylyltransferase [Pirellula staleyi DSM 6068]
gi|283438289|gb|ADB16731.1| tRNA adenylyltransferase [Pirellula staleyi DSM 6068]
Length = 419
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 90/409 (22%), Positives = 162/409 (39%), Gaps = 14/409 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I+++ L ++ GG VRD L+ +D D+AT+ LPD V ++F + +
Sbjct: 13 AISVVRQLRAAGYQALWAGGCVRDQLLGQRPKDYDVATSALPDEVRKLFGHK--RTLAIG 70
Query: 75 ISYGTIKIICRKK--YFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA-D 130
++G I ++ ++ D+ T R+D +DGR+ + + D+ RRDFTIN L+
Sbjct: 71 AAFGVITVLGPREAGQLDVATFRTDATYSDGRHPDAITFSTPEHDAQRRDFTINGLFFDP 130
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +VIDYVGG DL R ++ I D RI ED LR+LR RF A G
Sbjct: 131 IEERVIDYVGGEADLAARVVRAIRDPAERIEEDKLRMLRAVRFAARLGFSIEAQTLAAIE 190
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ-- 248
+A + + + + K+L + + + + E+ ++ E++ L
Sbjct: 191 QRADQLQVVSAERIAAE-MEKILVHNSRAQGLALLRQARLLPEVLPELAEVTDFTLLARE 249
Query: 249 VIEAEQ-VFEWKIDSLLRFI--VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ EQ F I +LLR +A ++ L + +
Sbjct: 250 LSLLEQPSFAMAIAALLRHTAAARSPLTAAALADQIAARWRLSNHVAEGISLALRQLPQL 309
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK-KPLFP 364
+ + +L + + L + A+ + + + P
Sbjct: 310 QIATELPWPQLQRMLVQPRIGELLGLLAAVERGAGERSPQTDYCRAKLALPAEQLNPPPL 369
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
LTG D+ + G+ PG IL + + + + + KL A
Sbjct: 370 LTGSDLKRAGLSPGPMFREILEQVRDQQLLGQLHTLGDAI-EYAEKLAA 417
>gi|189462187|ref|ZP_03010972.1| hypothetical protein BACCOP_02869 [Bacteroides coprocola DSM 17136]
gi|189431090|gb|EDV00075.1| hypothetical protein BACCOP_02869 [Bacteroides coprocola DSM 17136]
Length = 501
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 77/450 (17%), Positives = 156/450 (34%), Gaps = 56/450 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTSI 75
I ++ + +VGG VRD +N +DID+ + F + + +
Sbjct: 44 ISDTADELGLECYVVGGYVRDIFLNRPSKDIDVVVVGSGIEIAEAFGRKLGRGAHVSVFK 103
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
++GT ++ + R + + VV + D RRDFTINAL
Sbjct: 104 NFGTAQVKYHDLEVEFVGARKESYSHDSRKPVVENGTLEDDQNRRDFTINALAVCLNKSR 163
Query: 136 I----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
D GGL+DL+ RTI+ D +D LR++R RF I+ + A
Sbjct: 164 YGELVDPFGGLDDLKERTIRTPLDPDITFSDDPLRMMRCIRFATQLNFF-IEDETFDALE 222
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------- 241
+ ++ +KI+S ERI E+NK+L + P V + G+ + IF + +
Sbjct: 223 RNRERIKIISRERIADELNKILLSPVPSKGFVDLDRCGLLELIFPEFVALQGVEVKNGRG 282
Query: 242 -SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL------------- 287
+ + + + + + LR+ L+ K +
Sbjct: 283 HKDNFYHTLEVVDNIAKVTDNLWLRWATLLHDIGKPRTKRWDSRIGWTFHNHNFVGEKMI 342
Query: 288 ----------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
E ++ + ++ E+ + + L
Sbjct: 343 PDIFRKMKLPMNEKMKYVQKLVGLHMRPIVIADEEVTDSAVRRLLFEAGDDIDDLMLLCE 402
Query: 338 NNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVGN 383
++T ++ + L + + P+ G +++K + + P +++G+
Sbjct: 403 ADITSKNEVRKQRFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGAEIMKVFNLQPCREIGS 462
Query: 384 ILVHCKQEWINSSFQLSQEDLHHL-LRKLI 412
+ K ++ + L+K
Sbjct: 463 LKSSIKDAILDGVIPNEHDAAFEYMLKKAK 492
>gi|283768261|ref|ZP_06341174.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bulleidia extructa W1219]
gi|283105138|gb|EFC06509.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bulleidia extructa W1219]
Length = 404
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 87/401 (21%), Positives = 145/401 (36%), Gaps = 26/401 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ ++ L ++ +VGGA+R+ L+ ++D D+ T P+ +MR F Y IPT
Sbjct: 9 IQKLIHELQNHGYEAYLVGGAIRNHLLGYPIKDYDLTTNATPEEMMRFF--QNYPTIPTG 66
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + +ITT R D F+ K D RRDFTINAL QQ
Sbjct: 67 IQHGTLTVLSQGHPIEITTYRVDGEYQDHRHPNQVQFSSSLKEDCARRDFTINALCYHQQ 126
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D+ G DL R I+ IG A R ED LRILR RF A + K
Sbjct: 127 EGLVDFFQGQRDLEKRLIRCIGKAEDRFEEDALRILRALRFAARLNFEIEKETAQAMFKK 186
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
I I P + IF + +I + + +VI+
Sbjct: 187 KDLLAFISKERIHSEIIQLFS---YPKSGQFLEPYFDIFISAIPSLSQIQKEVVFKVIQK 243
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E + + +LL + S+ K F+ + + +
Sbjct: 244 EPLSQISRLALLFSTL-------SDYHSVLKNFTFSNQEIQKIETILQYQSLPIK----- 291
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGD 368
+ + Y + + ++ +L D +L L + P G
Sbjct: 292 --EDYDGYRILSLFSNVEDYLLYRVALTESLDYSSLLSWLKQLKEKPIPTSLSELKFNGY 349
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D + G G ++ +L + +L +
Sbjct: 350 DAKRLGY-EGIEIKKLLNELLDLCMQEKIVNHHHELLKYAQ 389
>gi|270295998|ref|ZP_06202198.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317479566|ref|ZP_07938693.1| poly A polymerase head domain-containing protein [Bacteroides sp.
4_1_36]
gi|270273402|gb|EFA19264.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316904228|gb|EFV26055.1| poly A polymerase head domain-containing protein [Bacteroides sp.
4_1_36]
Length = 476
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 78/453 (17%), Positives = 166/453 (36%), Gaps = 56/453 (12%)
Query: 10 FHDSDL-INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ D+ I ++ + +VGG VRD + +DID+ + K
Sbjct: 12 YFSDDIFKRISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLG 71
Query: 69 K--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + ++GT ++ + R + T +V + D RRDFTINA
Sbjct: 72 RGAHVSVFKNFGTAQLKYYGTEVEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTINA 131
Query: 127 LYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L +++D GG+ DL+ +TI+ D +D LR++R RF G I
Sbjct: 132 LAVCLNRVRYGELVDPFGGIGDLKEKTIRTPLDPDITFSDDPLRMMRCVRFATQLGFY-I 190
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
D + + + ++ + I+S ERI E+NK++ + P + + G+ + IF ++
Sbjct: 191 DDETFDSLERNRERISIISKERIADELNKIILSPIPSKGFIELDRCGLLELIFPELVRLQ 250
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----AKKFSL 287
+ + + + + + + LR+ L+ K + F
Sbjct: 251 GVETRNGRAHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPRAGWTFHN 310
Query: 288 PREI-RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AK 328
I + F + ++K+ L+ ++I
Sbjct: 311 HNFIGEKMIPDIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSAVRRLLFEAGDD 370
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YG 374
+ + L ++T ++ + L++ + P++G++++K +G
Sbjct: 371 IDDLMTLCEADITSKNMERKKRFLNNFQLVRQKLKDLEERDRIRNFQPPVSGEEIMKTFG 430
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+ P ++VG + K ++ E
Sbjct: 431 LSPCQQVGALKSAIKDAILDGIIPNEYEAARAF 463
>gi|225020840|ref|ZP_03710032.1| hypothetical protein CORMATOL_00848 [Corynebacterium matruchotii
ATCC 33806]
gi|224946322|gb|EEG27531.1| hypothetical protein CORMATOL_00848 [Corynebacterium matruchotii
ATCC 33806]
Length = 531
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 87/468 (18%), Positives = 159/468 (33%), Gaps = 67/468 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + + N +VGG+VRD+L+ D+D T P+ ++ I
Sbjct: 47 PIIQPLAAEFNTRGHHLYLVGGSVRDALLGRLGNDVDFTTDARPETILEILEHFADITWD 106
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130
T I YGT+ + +ITT RSD + R +VVF D +RRDFTINA+ +
Sbjct: 107 TGIEYGTVSAEKSGQQIEITTFRSDIYDGESRNPEVVFGDTLAGDLVRRDFTINAMAVEI 166
Query: 131 -------------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
+ + D +GG DL I +D LR+LR RF +
Sbjct: 167 TSAPDAAGATPAAAELEFFDPMGGFADLMKGVIDTPAAPDQSFADDPLRLLRAARFSSQL 226
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G + A ++ ++ ER+ E++K+L P I M G+ +F +
Sbjct: 227 GF-AVSDRVRAAMTDLASEIQRITVERVQVELDKMLLGAQPWLGIDLMVTTGLADYVFPE 285
Query: 238 VQEISLDQLSQVIEA--------------EQVFEWKIDSLLRFIVLISWQDKKSILSM-- 281
+ + L Q +Q + D +LR+ L+ K
Sbjct: 286 LPRLQLAQDEHHQHKDVYAHSLQVLRQAMDQEAAGEPDLVLRWAALVHDIGKPDTREFTE 345
Query: 282 --------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFY 318
+K + + + + S + Y
Sbjct: 346 DGRVSFHQHEVVGAKLVRNRMRKLKYSKAMVRDVSQLVYLHMRFHGFSEGQWTDSAVRRY 405
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGD 368
+ ++ +L + + ++ Q+ + + K L G
Sbjct: 406 VTDAGDLLPRLHKLVRADCTTRNKRKAAWLRQMYAQLEERIADLAAKEDLAKVRPDLDGK 465
Query: 369 DVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+++ G+ PG VG + K+ + L +++ +L A
Sbjct: 466 EIMAILGLQPGPDVGEAWSYLKEVRLERG-PLDRDEAIKVLTTWWADR 512
>gi|282858987|ref|ZP_06268125.1| HDIG domain protein [Prevotella bivia JCVIHMP010]
gi|282588267|gb|EFB93434.1| HDIG domain protein [Prevotella bivia JCVIHMP010]
Length = 474
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 78/456 (17%), Positives = 162/456 (35%), Gaps = 56/456 (12%)
Query: 10 FHDSDLIN-ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
D D+ + I +K + +VGG VRD + DID+ +V
Sbjct: 12 LLDKDIFHHISEAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVASELKNILG 71
Query: 69 K--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
K + ++GT ++ R + R + + +V + D RRDFTINA
Sbjct: 72 KKAHLSVFKNFGTAQVKYRDTEVEFVGARKESYSHDSRKPIVEDGTLEDDQNRRDFTINA 131
Query: 127 LYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ +++D GG++DL + I+ D +D LR++R RF I
Sbjct: 132 MAVCLNKDRLGELVDPFGGVDDLWDGIIRTPLDPDITFSDDPLRMMRCVRFATQLNFF-I 190
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D + A + + +KI+S ERI E+NK++ K P V ++ G+ + I ++ +
Sbjct: 191 DDETFAALERNAERIKIISGERIAEELNKIMMTKTPSKGFVDLHRCGLLQLIMPELTAMD 250
Query: 243 L-----------DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSL 287
+ + + + + LR+ L+ K F
Sbjct: 251 IVDVKNGRAHKNNFYHTLEVLDNSCKTTDKLWLRWSALLHDIGKPKCKRWDNAIGWTFHN 310
Query: 288 PREI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ ++ + + ++ E+
Sbjct: 311 HNIVGAKMVPGLFRRMKLPMDAKMKYVRKLVDMHMRPIVIADEEVTDSAVRRLMNDAGDD 370
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY-G 374
+ + L ++T ++ + L++ ++ + G+++++
Sbjct: 371 IDDLMTLCEADITSKNELRKQRFLNNFRTVREKIEDLKVRDYKRLLQPCIDGNEIMEMFH 430
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ P +VG + K+ +++ +E L LL K
Sbjct: 431 LKPSYEVGVLKKALKEAVLDNKVANEREPLLALLNK 466
>gi|160889203|ref|ZP_02070206.1| hypothetical protein BACUNI_01624 [Bacteroides uniformis ATCC 8492]
gi|156861210|gb|EDO54641.1| hypothetical protein BACUNI_01624 [Bacteroides uniformis ATCC 8492]
Length = 476
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 78/453 (17%), Positives = 166/453 (36%), Gaps = 56/453 (12%)
Query: 10 FHDSDL-INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ D+ I ++ + +VGG VRD + +DID+ + K
Sbjct: 12 YFSDDIFKRISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLG 71
Query: 69 K--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + ++GT ++ + R + T +V + D RRDFTINA
Sbjct: 72 RGAHVSVFKNFGTAQLKYYGTEVEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTINA 131
Query: 127 LYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L +++D GG+ DL+ +TI+ D +D LR++R RF G I
Sbjct: 132 LAVCLNRVRYGELVDPFGGIGDLKEKTIRAPLDPDITFSDDPLRMMRCVRFATQLGFY-I 190
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
D + + + ++ + I+S ERI E+NK++ + P + + G+ + IF ++
Sbjct: 191 DDETFDSLERNRERISIISKERIADELNKIILSPIPSKGFIELDRCGLLELIFPELVRLQ 250
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----AKKFSL 287
+ + + + + + + LR+ L+ K + F
Sbjct: 251 GVETRNGRAHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPRAGWTFHN 310
Query: 288 PREI-RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AK 328
I + F + ++K+ L+ ++I
Sbjct: 311 HNFIGEKMIPDIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSAVRRLLFEAGDD 370
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YG 374
+ + L ++T ++ + L++ + P++G++++K +G
Sbjct: 371 IDDLMTLCEADITSKNMERKKRFLNNFQLVRQKLKDLEERDRIRNFQPPVSGEEIMKTFG 430
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+ P ++VG + K ++ E
Sbjct: 431 LSPCQQVGALKSAIKDAILDGIIPNEYEAARAF 463
>gi|325845057|ref|ZP_08168373.1| tRNA adenylyltransferase [Turicibacter sp. HGF1]
gi|325488933|gb|EGC91326.1| tRNA adenylyltransferase [Turicibacter sp. HGF1]
Length = 386
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 90/399 (22%), Positives = 169/399 (42%), Gaps = 35/399 (8%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+L+ L + ++ VGG VRD L+ + DIDI T+ PD V+ +F K I T I +
Sbjct: 10 VLNRLIENGYEAYFVGGMVRDRLLGRDIYDIDITTSAKPDVVIGLFE----KTIQTGIKH 65
Query: 78 GTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
GT+ ++ ++TT R R ++V FT D RRDFT+NA+ G +
Sbjct: 66 GTVTVMIEGIPVEVTTFRVEEAYEDFRRPSEVRFTSSLIEDLKRRDFTVNAIAESIDGTL 125
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
D GL DL NR IK +G+A R +ED LR+LR RF + G ++ + A +
Sbjct: 126 EDPFHGLKDLSNRQIKAVGEAKERFIEDPLRMLRGLRFMSKLGF-ELEDETSKAIGEVGA 184
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--EIFLDVQEISLDQLSQVIEAE 253
++ +S ERI EI ++ + L A + + + F +++ S L+++ E
Sbjct: 185 LIEHISKERIKKEIEGMVSGEFSLKAFNLLIHTPLCDSITYFKELKRYSSSNLARLEEGV 244
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313
++F + + + K + + + + C Q
Sbjct: 245 ELFA------------LIGLTVEEMEDYLKAWPFSNVEKRMIKAIRECYDKQLP-----P 287
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK- 372
+ + Y Y + + + +I L + + L ++ + + D+++
Sbjct: 288 QYIQYKYKEDLALHYHRIQNVLKQSVEKFE--------LRELPITDRKELAIEVADIIQC 339
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
P G + +L + E + + + L + +++L
Sbjct: 340 INHPKGPWLSQLLEALEFEVVMGTLENEVVSLRNYIQQL 378
>gi|256833750|ref|YP_003162477.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Jonesia denitrificans DSM 20603]
gi|256687281|gb|ACV10174.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Jonesia denitrificans DSM 20603]
Length = 492
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 82/466 (17%), Positives = 150/466 (32%), Gaps = 65/466 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +I + L + + IVGG VRD+L+ + D+D AT+ PD +
Sbjct: 27 NPTVIELGELFHAAGHELAIVGGPVRDALLGRTSHDLDFATSASPDETEALLRTWGDSHW 86
Query: 72 PTSISYGTIKIICRKKY------FDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTI 124
+GTI + +ITT R+D R V F D RRDFT+
Sbjct: 87 DIGKEFGTIGAMRHGVNGSDDIVVEITTYRTDKYDPTSRKPLVAFGDTLDGDLSRRDFTV 146
Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
NA+ + D GLNDL + ++ +D LR++R RF A G ++
Sbjct: 147 NAMAIRLPELTFADPFDGLNDLSHGLLRTPIRPEQSFDDDPLRMMRAARFAAQLGF-TVE 205
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
D A + I+S+ER+ E+ KL+ + +P+ + + N G+ + +V +
Sbjct: 206 PDAFAAIAAMAGRISIVSAERVRDELTKLMLSAHPVTGLEVLVNTGLAHHVIPEVPGMKE 265
Query: 244 DQLSQVIEAEQVFE-------------------WKIDSLLRFIVLISWQDKKSILSM--- 281
+ D +LRF L+ K +
Sbjct: 266 ASDEHNRHKDVYAHTMTVIQQAIDLETGPDGPVPAPDLVLRFAALMHDVGKPATRKFEPN 325
Query: 282 -------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYL 319
+ ++ + + Y+
Sbjct: 326 GTVSFHHHELVGAKMTAKRLRALRFDKDTIKSVSRLVELHLRFHGYGEGAWTDSAVRRYV 385
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
+ +L + + D+ L G+
Sbjct: 386 TDAGPHLERLHRLTRADCTTRNKNKARRLSRAYDDLEQRIVALREQEEIDAIRPDLNGEQ 445
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++ GI PG++VG + + ++ L ++ L + A
Sbjct: 446 IMDILGIAPGREVGLAYKYLLELRMDEG-PLDEDTAKERLLQWWAQ 490
>gi|147677571|ref|YP_001211786.1| hypothetical protein PTH_1236 [Pelotomaculum thermopropionicum SI]
gi|146273668|dbj|BAF59417.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
Length = 873
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 77/402 (19%), Positives = 138/402 (34%), Gaps = 23/402 (5%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
+ GG VRD L+ + DID+ + R + + + T ++
Sbjct: 475 GYRVYAAGGIVRDLLLGMECLDIDLVVEGDGIELARALGQDYGARVRVHQKFKTATVLLP 534
Query: 86 KKYF-DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----KVIDYVG 140
++ D+ T R + + D RRDFTINA+ +V+D+ G
Sbjct: 535 GEWQVDVATARMEFYQYPAAMPQIEASSLHQDLYRRDFTINAMAVSLNRDDFGEVVDFFG 594
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKI 199
G DL+ I+ + + +ED R+LR RF Y + L K L
Sbjct: 595 GREDLQRGLIRVLH--NLSFVEDPTRLLRGIRFEKRYNMSLEPQTLKLAQEAIRSKMLAR 652
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS----LDQLSQVIEAEQV 255
+S ERIW E+ +L P A+ + ++ +F V +D+L + I +
Sbjct: 653 VSRERIWEELKCILLEPRPGPALARLAELKLWDFLFPAVDYSKIAPVIDELPRSINFLRS 712
Query: 256 FEWK---IDSLLRFIVLISWQDKKSILSMAKKFSLPREIR-YFLISFFNCNFNQKTLSIP 311
L+ F+ ++ D++S + + L R + + L
Sbjct: 713 CNVPGIGETWLIYFLAVLHQMDRQSADEILSLYRLGRRQAEKIDAALGGWRDVVEGLRCH 772
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
V + LA N + C + ++G D+
Sbjct: 773 IATSGLARRLISVPTETYPLILAYLETNELRRRFC------DVLTAVSCEKPAISGKDLR 826
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
G PG L Q ++ QE+L ++ ++
Sbjct: 827 HMGYRPGPAFKKALDAVWQARLDGIVSTRQEEL-EYAKEFLS 867
>gi|301061040|ref|ZP_07201837.1| putative tRNA adenylyltransferase [delta proteobacterium NaphS2]
gi|300444834|gb|EFK08802.1| putative tRNA adenylyltransferase [delta proteobacterium NaphS2]
Length = 444
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 85/441 (19%), Positives = 159/441 (36%), Gaps = 53/441 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76
I+ L + ++ +VGGAVRD L+ + D+DI T+ P+ + +F Y V +
Sbjct: 5 RIIKRLCQHGYETYVVGGAVRDMLIGKAPADVDIVTSATPEEIEVLFE--GYPVKTVGKA 62
Query: 77 YGTIKIICRKKYFDITTLRSDLIT--DGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+G + + ++++T R D D + +V F + D RRD TINA+ Q
Sbjct: 63 FGVVLV----AGYEVSTFRQDRYLGLDDKACQVTFVEAIEEDLSRRDLTINAMAFCDQSG 118
Query: 135 -VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+ID G DL+ R I+F+G+ RI ED RI+R RF A
Sbjct: 119 ALIDPHNGREDLKKRRIRFVGNPMERIYEDPNRIVRACRFLARIDGSFDPQTFKALKECG 178
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS---------LD 244
++ +R+ EI K ++ + +++ G+ + IF +++ D
Sbjct: 179 HYVRDHVAPDRVRIEIMKAMKIRRASRFFYALHDIGVLQYIFPSMEKCYSHAHGPHHLED 238
Query: 245 QLSQVIEAEQ----------------------VFEWKIDSLLRFIVLISWQDKKSILSMA 282
++ V+E+ + + ++
Sbjct: 239 VFDHLMICGDAVSIRYPLLKLAGYLHDVGKPLVYEYNPEKGHHTFYGHAGAGSEAAREEM 298
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV---MIAKLKIFLALHYNN 339
+ + + P+ + + L++ LA N
Sbjct: 299 GLLRFSNSDIDHVSTLVGLHMRAMEGITPKAARRMLKTLHEHDIDFRDFLRLRLADSQAN 358
Query: 340 LTH--------QDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQ 390
L ++ +V S + +TG DV+ I PG KVG +L
Sbjct: 359 LAKRPMAIADLKNIVHAFEVESYEGSFSVTDLAVTGKDVMAVLRIAPGPKVGKVLKSLLD 418
Query: 391 EWIN-SSFQLSQEDLHHLLRK 410
++ S+E L ++ +
Sbjct: 419 RVLDQGKELNSRETLLAVIAR 439
>gi|284034912|ref|YP_003384843.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Kribbella flavida DSM 17836]
gi|283814205|gb|ADB36044.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Kribbella flavida DSM 17836]
Length = 475
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 88/442 (19%), Positives = 155/442 (35%), Gaps = 58/442 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + + ++ + +VGG VRD L+ +D+D AT+ PD V R+ + V
Sbjct: 16 APVVDELGARFDRAGHEIALVGGPVRDILLGRGSKDLDFATSARPDDVQRLLTGWADHVW 75
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALY-A 129
+GTI +ITT RS+ R +V + +AD RRDF +NA+
Sbjct: 76 DIGKDFGTIGCRKGDWVLEITTYRSESYDPTSRKPEVAYGDTLEADLARRDFAMNAMAVL 135
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ +D GGL D+ N+ I+ G +D LR++R RF A D + A
Sbjct: 136 LPSHRFVDPYGGLEDVANKAIRTPGSPEDSFSDDPLRMMRAARFAAQLAFTP-DPAVVAA 194
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------- 238
+ + I+S+ER+ E+ KL+ A P + + + G+ + ++
Sbjct: 195 MTAMAERITIVSAERVRDELVKLVCAPYPRIGLDLLVSTGLADHVLPELPALRLELDEHH 254
Query: 239 -----QEISLDQLSQVIEAEQVFEWK---IDSLLRFIVLISWQDKKSILSM--------- 281
+ SL L Q I+ E + D ++RF LI K
Sbjct: 255 RHKDVYQHSLTVLDQAIDLEPRLGEEVELPDFVVRFAALIHDIGKPRTRKFEGDGKVTFH 314
Query: 282 -------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVM 325
K E + + E Y+ +
Sbjct: 315 HHDVVGAKLARKRMKALRFSNEQIDQVGKLVELHLRFHGYGTGEWTDSAVRRYVRDAGPL 374
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YG 374
+ +L + + + D+ L G+ +++ G
Sbjct: 375 LTRLHVLTRADSTTRNRRKADALRAAYDDLEQRIARLQEQEELDAMRPDLDGNQIMEILG 434
Query: 375 IPPGKKVGNILVHCKQEWINSS 396
I PG+KVG + ++
Sbjct: 435 IGPGRKVGEAYKFLMELRMDQG 456
>gi|83942051|ref|ZP_00954513.1| polyA polymerase family protein [Sulfitobacter sp. EE-36]
gi|83847871|gb|EAP85746.1| polyA polymerase family protein [Sulfitobacter sp. EE-36]
Length = 367
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 123/387 (31%), Positives = 189/387 (48%), Gaps = 30/387 (7%)
Query: 24 KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
G VGG VR++L+ ++ D+D++T LP+RVM + ++ K +PT + +GT+ ++
Sbjct: 3 DGGHAIYFVGGCVRNALLGVADSDVDMSTNALPERVMALAARAGLKAVPTGVEHGTVTVV 62
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
K F++TT R D+ TDGR A V F+ D+LRRDFT+NALYAD QG+VID + GL
Sbjct: 63 SGGKGFEVTTFRRDVETDGRRAVVAFSDSILDDALRRDFTMNALYADSQGRVIDPLEGLV 122
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY--GEKNIDSDGLVASIKAKKGLKILS 201
DLR R ++FI DA RI EDYLR LR+FRF A Y + D + L A GL+ LS
Sbjct: 123 DLRARRVRFIEDAAQRIREDYLRTLRYFRFCAWYADPIEGFDPEALAAIAAHTDGLESLS 182
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ERI +E+ KLL A +P A+ M G+ I + L V+ EQ+ + +D
Sbjct: 183 AERIGAELTKLLTAPDPAPAVAAMRQTGVLGTILPGSDD---RWLGMVVHFEQLLQMSVD 239
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
R L + ++ L + +L + +T++ G
Sbjct: 240 WRTRLAALGG-------EDIDQRLRLSKADAKYLHRLKEAAYGGETVAAIAHID-----G 287
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP--GK 379
+ A + + L VL I + +FP+ D++ P G
Sbjct: 288 GDMARAVVVLRACLSETPPDAT-------VLDRIAQAETAVFPVQAADLM----PEYTGP 336
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHH 406
+G L + WI S F +++ L +
Sbjct: 337 ALGRRLAELRAHWIASGFAATRDSLLN 363
>gi|212690796|ref|ZP_03298924.1| hypothetical protein BACDOR_00283 [Bacteroides dorei DSM 17855]
gi|212666673|gb|EEB27245.1| hypothetical protein BACDOR_00283 [Bacteroides dorei DSM 17855]
Length = 500
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 76/459 (16%), Positives = 164/459 (35%), Gaps = 56/459 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
F++ I ++ + +VGG VRD + +DID+ + + K +
Sbjct: 35 FNNKIFKLISETADELGLECYVVGGYVRDIFLARPSKDIDVVVVGSGIEMAQALGKKLGR 94
Query: 70 --VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT ++ + R + + VV + D RRDFTINA+
Sbjct: 95 GAHVSVFKNFGTAQVKYHDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAM 154
Query: 128 YADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+++D GL+DL+ RTI+ D +D LR++R RF ID
Sbjct: 155 AVCLNKARFGELVDPFNGLDDLKERTIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-ID 213
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----- 238
A + K+ + I+S ERI E+NK+L A P + + G+ IF ++
Sbjct: 214 DTTFEALSRNKERIHIISKERIADELNKILLAPIPSKGFIELDRCGLLPLIFPELVALQG 273
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----- 287
+ + + + + + + LR+ L+ K +
Sbjct: 274 VETRNGRAHKDNFYHTLEVVDNISKHTDNLWLRWATLLHDIGKPRTKRWEPRIGWTFHNH 333
Query: 288 ------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
E ++ + + ++ + +
Sbjct: 334 NFIGEKMIPDLFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDI 393
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGI 375
+ L ++T ++ + L + ++ P+ G+++++ + +
Sbjct: 394 DDLMMLCEADITSKNEARKQKFLDNFKLVRQKLKDLEEKDWIRNFQPPVDGEEIMRIFDL 453
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRKLIA 413
P +++G++ K ++ + L H+L+K +
Sbjct: 454 QPCREIGSLKSSIKDAILDGIIPNEHDAALEHMLKKAKS 492
>gi|269838464|ref|YP_003320692.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Sphaerobacter thermophilus DSM 20745]
gi|269787727|gb|ACZ39870.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Sphaerobacter thermophilus DSM 20745]
Length = 478
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 83/443 (18%), Positives = 146/443 (32%), Gaps = 51/443 (11%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVIPTSI 75
+ + + +VGG+VRD L+ V D+D AT+ P+ + V
Sbjct: 33 RLGDAFAQHGAELYLVGGSVRDLLLGQPVTDLDFATSAEPELTKAAGAAAGADSVYTVGE 92
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQG 133
+GT+ + +ITT R + R KV D D RRDFTINA+ D + G
Sbjct: 93 QFGTVGFVFDGVSVEITTYREEHYPTPDRRPKVRLGTDLVGDLSRRDFTINAIAVDARDG 152
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
V D GGL+DL R I+ +GD R ED LRILR RF A +
Sbjct: 153 TVHDPFGGLDDLERRIIRAVGDPKARFAEDPLRILRAARFAAQLDFRVDRRTLAAMRAMG 212
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------QEI 241
+ +I +N+LL A + ++ + + + +V ++I
Sbjct: 213 PQLERISRERIAAE-LNRLLIAPAAARGLALLHETDLLRWVLPEVVPMAEDTGAGRHKDI 271
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS----------------ILSMAKKF 285
L L V ++ + +LL + + ++
Sbjct: 272 WLHTLRVVEQSPPRLAVRWAALLHDAAKPMTRSVDARGEVHFFGHERVGADLARKALRRL 331
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF---------LALH 336
R + + + + + + H
Sbjct: 332 KQERALIDRVAGLVEMHLRPASYDSTWTDSAVRRLMLEAGDLWDDLLDLAAADVTSARAH 391
Query: 337 YNNLTHQDTCFILQVLSDII---HWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEW 392
+ + + + + PL G +++ G PPG+ +G + H ++
Sbjct: 392 RQREAARRIAALREHARRLEEEHALAQLQSPLDGHELMAMFGRPPGRWIGEVKDHLRELV 451
Query: 393 INSSFQLSQ------EDLHHLLR 409
I+ E L +
Sbjct: 452 IDGVLAPDDKEGARAEALRWMAE 474
>gi|114567328|ref|YP_754482.1| tRNA nucleotidyltransferase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338263|gb|ABI69111.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
Length = 437
Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats.
Identities = 93/437 (21%), Positives = 178/437 (40%), Gaps = 49/437 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVI 71
++ IL+ L+ ++ I G +RD L+ + DI T LP+ + IF + I
Sbjct: 7 ENVQTILNKLHSNGYQAYIYGACIRDYLLGKEPINWDITTNALPNNTVVIFDENEGFTSI 66
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
P+ YG + + + + + T R+ F D D L +DFT+N++ ++
Sbjct: 67 PSVEDYGIVTLHFKGESCQVNTFRTGE-------ARRFADDISEDLLHKDFTMNSIAYNE 119
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
Q ++D G+ D+ R I+ + + ++ ED RILR RF + G K L+ ++
Sbjct: 120 QAGIVDPYNGVGDIEKRLIRCAQNPYEQMQEDSARILRAVRFESQLGFK--IEAELLQAM 177
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
K K S R+ +E +LL ++ P +I + G+ + + ++
Sbjct: 178 KDLKDTVPASGSRVRNEFIQLLLSEQPSRSIRRLLELGLLERLIPELMPAIGFDTHSSYH 237
Query: 252 AEQVFEWK--------IDSLLRFIVLISWQDKKSILS----------------------M 281
+ VFE + LR L+ DK + L+ +
Sbjct: 238 DKDVFEHSLVVLDNTEPNLTLRLAALLHDIDKPNCLTIDEDGEGHCYGHASGGSEMAQAI 297
Query: 282 AKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLA-LHYNN 339
+ + R+ + S + N +S IK+L G + ++ LA + +
Sbjct: 298 LGRLNFDRKTIQAVSSLIKEHMNDFGNISDLSIKRLIRRVGPDNIDRLFELQLADIKGSA 357
Query: 340 LTHQDTCFILQV-------LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
L+ +D I ++ LS ++G D++ G PPGKK+G + + +
Sbjct: 358 LSSRDPERITKIRNKCFEVLSRREPLTVHDLDISGYDLLSLGYPPGKKIGETMDYLLDQV 417
Query: 393 INSSFQLSQEDLHHLLR 409
I++ ++ L LL+
Sbjct: 418 IDNPSLNQRDTLIALLK 434
>gi|255014465|ref|ZP_05286591.1| tRNA nucleotidyltransferase [Bacteroides sp. 2_1_7]
Length = 476
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 79/453 (17%), Positives = 159/453 (35%), Gaps = 55/453 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
I + + ++GG VRD +N +DID+ + + +K +
Sbjct: 12 ISAKPFHLISEAAEELGVEVYVIGGYVRDIFLNRPSKDIDVVAVGSGIELAKRVAKKIGR 71
Query: 70 --VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT ++ + R + + VV + D RRDFTINAL
Sbjct: 72 GAYLSVFKNFGTAQVKAGDLELEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAL 131
Query: 128 YADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+ D GGL D+ TI+ D +D LR++R RF G ID
Sbjct: 132 ALCLNKERYGELVDPFGGLEDMDELTIRTPLDPDVTFSDDPLRMMRAIRFATQLGFF-ID 190
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-- 241
D A I+ ++ + I+S ERI E+NK++ + P + G+ IF ++ +
Sbjct: 191 PDTFDAIIRNRERISIISKERIVDELNKIVLSPKPSIGFDLLDKCGLLPLIFPELCALKG 250
Query: 242 ---------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----- 287
+ ++ +++ + + LR+ L K + +
Sbjct: 251 VETKEGIGHKDNFAHTLMVLDRLSKTSDNLWLRWSALFHDIAKPATKRFDPRLGWTFHNH 310
Query: 288 ------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
E ++ + + LS E+ +
Sbjct: 311 NFIGERMIPGIFRKMKLPMNEKMKYVQKMVSLHMRPIALSDDEVTDSAIRRLLFDAGDDI 370
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGI 375
+ L ++T ++ + + L++ ++ P++G+++++ +G+
Sbjct: 371 DDLMKLCEADITSKNPEKVRRFLNNFRKVREKLADIEEKDRVRNFQPPVSGEEIMETFGL 430
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
P K VG + K ++ E L
Sbjct: 431 APSKPVGVLKEAIKNAILDGVIPNEYEAARQFL 463
>gi|296133143|ref|YP_003640390.1| Polynucleotide adenylyltransferase region [Thermincola sp. JR]
gi|296031721|gb|ADG82489.1| Polynucleotide adenylyltransferase region [Thermincola potens JR]
Length = 876
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 83/411 (20%), Positives = 153/411 (37%), Gaps = 17/411 (4%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76
I L ++ IVGG VRD L+ + D D+ + ++ +
Sbjct: 467 QISYLADQKGYSVFIVGGFVRDLLLGVENLDFDLVVEGDGIAFAKELAEFLCGRVRVHDK 526
Query: 77 YGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
+GT +I + D+ T R++ V K D RRDFTINA+ K
Sbjct: 527 FGTAIVILSDEFKIDVATARTEYYEYPAALPKVEISSLKQDLYRRDFTINAMAIALSQKN 586
Query: 136 IDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+ + + + + +ED RILR RF YG +A
Sbjct: 587 FGELIDFFGGKRDLEEKVVRVLYNLSFVEDPTRILRAVRFEQRYGFTIEPQTLALAKGAI 646
Query: 194 KKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL------DVQEISLDQL 246
K + LS++R+ E+ +LE +PL AI+ M GI++ + ++ +
Sbjct: 647 KAQILNKLSADRVREELKHILEETSPLGAIIRMKELGIWQFVLPQAMVDEEIISLIERAP 706
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ +++ I L + L+ + +I + L +E + L + C
Sbjct: 707 KETTHIKELGFLDIKVWLIHLALLVHKSGATIEEIDTHLRLNKEEQLILKNILACWEVIV 766
Query: 307 TLSIPEIKKLFYLYG-DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
L K+ + M A+ +FL L D + ++ + K+ +
Sbjct: 767 RLCAVPGAKVSEIARYLNEMPAEGYVFLLLKLG-----DQRSVNNLVKCLKRMKRNKLLI 821
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
TGDD+ + G PG L + ++ + +E+L + + I +
Sbjct: 822 TGDDIKRLGHQPGPLFKEALQAAWEAKLDGLLKSREEEL-GFVDRYIKERE 871
>gi|169632007|ref|YP_001705656.1| Poly(A) polymerase PcnA [Mycobacterium abscessus ATCC 19977]
gi|169243974|emb|CAM65002.1| Poly(A) polymerase PcnA [Mycobacterium abscessus]
Length = 478
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 78/457 (17%), Positives = 156/457 (34%), Gaps = 56/457 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
H L + +L + +VGG+VRD+ + D+D T P++V + + +
Sbjct: 21 HKKLLSELGALFDSAGFDLYLVGGSVRDAALGKPGIDLDFTTDARPEQVQNLVTGWAEAI 80
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
T I++GTI + R + +ITT RSD R +VVF + D +RRDFT+NA+
Sbjct: 81 WDTGIAFGTIGVARRGQRVEITTFRSDSYDQQSRNPEVVFGDSLEGDLVRRDFTVNAMAV 140
Query: 130 DQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ D + GL LR + +D LR+LR RF + G
Sbjct: 141 KIGPDGPGEFCDPLNGLEALRAGVLDTPSAPEISFGDDPLRMLRAARFVSQLGFTVAPRV 200
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY-------------NGGIFK 232
A + +I + ++KL+ +P+ I + +
Sbjct: 201 LEALHAMADQLGRITAERVQTE-LDKLIVGAHPVAGIDLLVDSGLGAVVLPEVGQMQLTI 259
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------- 281
+ +++ L+ + +A + + D +LR+ L+ K +
Sbjct: 260 DEHHQHKDVYRHSLTVLEQAVDLEDEGPDLVLRWAALLHDIGKPATRRHEEGGGVSFHHH 319
Query: 282 -----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIA 327
+ +++ + + + Y+ ++
Sbjct: 320 EVVGAKMVRKRMRALKYSKQMVDDVSQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGPLLP 379
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIP 376
+L + + + + + L G+ +++ G+P
Sbjct: 380 RLHKLVRADCTTRNKRRAARLQANYDGLEERIAELAAKEDLARVRPDLDGNQIMELLGVP 439
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
G VG K+ + L ++ LR+ A
Sbjct: 440 AGPIVGQAWQFLKELRLERG-PLDHDEAVEALRQWWA 475
>gi|255011076|ref|ZP_05283202.1| putative polyA polymerase [Bacteroides fragilis 3_1_12]
gi|313148884|ref|ZP_07811077.1| tRNA nucleotidyltransferase [Bacteroides fragilis 3_1_12]
gi|313137651|gb|EFR55011.1| tRNA nucleotidyltransferase [Bacteroides fragilis 3_1_12]
Length = 483
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 77/453 (16%), Positives = 162/453 (35%), Gaps = 59/453 (13%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + + +VGG VRD + +DID+ + K + +
Sbjct: 22 QISETADMLGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVF 81
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
++GT ++ + R + +V + D RRDFTINAL +
Sbjct: 82 KNFGTAQVKYHGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKE 141
Query: 135 VI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
D GG+NDL+ + I+ D +D LR++R RF ID D +
Sbjct: 142 RFGELVDPFGGMNDLKEKVIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IDDDTFESL 200
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----------Q 239
+ ++ ++I+S ERI E+NK++ + P + + G+ IF ++ +
Sbjct: 201 CRNRERIEIISRERIADELNKIMLSPIPSKGFIDLDRSGLLALIFPELVALQGVETRNGR 260
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----AKKFSLPREI-RYF 294
+ + + + + + LR+ L+ K F I
Sbjct: 261 AHKDNFYHTLEVLDNISKVTDNLWLRWAALLHDIAKPVTKRWEPKAGWTFHNHNFIGEKM 320
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AKLKIFLALH 336
+ + F + ++K+ L+ ++I + + L
Sbjct: 321 IPNIFRRMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMTLC 380
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++T + L++ + P++G+++++ + + P K+VG
Sbjct: 381 EADITSKNTERKQRFLNNFQLVRRKLKDLEEKDRVRNFQPPVSGEEIMEVFNLGPCKEVG 440
Query: 383 NILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
++ K ++ E +K+
Sbjct: 441 SLKSAIKDAILDGVIPNEYEAAYSFMLQKAKKM 473
>gi|150008663|ref|YP_001303406.1| tRNA nucleotidyltransferase [Parabacteroides distasonis ATCC 8503]
gi|256841303|ref|ZP_05546810.1| tRNA adenylyltransferase [Parabacteroides sp. D13]
gi|262383540|ref|ZP_06076676.1| tRNA nucleotidyltransferase [Bacteroides sp. 2_1_33B]
gi|301311477|ref|ZP_07217404.1| polyA polymerase family protein [Bacteroides sp. 20_3]
gi|149937087|gb|ABR43784.1| tRNA nucleotidyltransferase [Parabacteroides distasonis ATCC 8503]
gi|256737146|gb|EEU50473.1| tRNA adenylyltransferase [Parabacteroides sp. D13]
gi|262294438|gb|EEY82370.1| tRNA nucleotidyltransferase [Bacteroides sp. 2_1_33B]
gi|300830563|gb|EFK61206.1| polyA polymerase family protein [Bacteroides sp. 20_3]
Length = 476
Score = 163 bits (411), Expect = 6e-38, Method: Composition-based stats.
Identities = 79/453 (17%), Positives = 159/453 (35%), Gaps = 55/453 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
I + + ++GG VRD +N +DID+ + + +K +
Sbjct: 12 ISAKPFHLISEAAEELGVEVYVIGGYVRDIFLNRPSKDIDVVAVGSGIELAKRVAKKIGR 71
Query: 70 --VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT ++ + R + + VV + D RRDFTINAL
Sbjct: 72 GAYLSVFKNFGTAQVKAGDLELEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAL 131
Query: 128 YADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+ D GGL D+ TI+ D +D LR++R RF G ID
Sbjct: 132 ALCLNKERYGELVDPFGGLEDMDELTIRTPLDPDVTFSDDPLRMMRAVRFATQLGFF-ID 190
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-- 241
D A I+ ++ + I+S ERI E+NK++ + P + G+ IF ++ +
Sbjct: 191 PDTFDAIIRNRERISIISKERIVDELNKIVLSPKPSIGFDLLDKCGLLPLIFPELCALKG 250
Query: 242 ---------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----- 287
+ ++ +++ + + LR+ L K + +
Sbjct: 251 VETKEGIGHKDNFAHTLMVLDRLSKTSDNLWLRWSALFHDIAKPATKRFDPRLGWTFHNH 310
Query: 288 ------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
E ++ + + LS E+ +
Sbjct: 311 NFIGERMIPGIFRKMKLPMNEKMKYVQKMVSLHMRPIALSDDEVTDSAIRRLLFDAGDDI 370
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGI 375
+ L ++T ++ + + L++ ++ P++G+++++ +G+
Sbjct: 371 DDLMKLCEADITSKNPEKVRRFLNNFRKVREKLADIEEKDRVRNFQPPVSGEEIMETFGL 430
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
P K VG + K ++ E L
Sbjct: 431 APSKPVGVLKEAIKNAILDGVIPNEYEAARQFL 463
>gi|323489708|ref|ZP_08094935.1| CCA-adding enzyme [Planococcus donghaensis MPA1U2]
gi|323396839|gb|EGA89658.1| CCA-adding enzyme [Planococcus donghaensis MPA1U2]
Length = 377
Score = 163 bits (411), Expect = 6e-38, Method: Composition-based stats.
Identities = 78/396 (19%), Positives = 161/396 (40%), Gaps = 34/396 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I ++ L ++ IVGGAVRD L+ + DID+AT+ LP +V +F+ + + T
Sbjct: 4 AIKVIHTLKAAGFEAYIVGGAVRDLLLGKAPHDIDVATSALPQQVKALFA----RTVDTG 59
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++TT R++ + R V F + D RRDFTINA+ +
Sbjct: 60 IDHGTVLVLLDGEGIEVTTFRTESSYSDNRRPDSVEFVLSLEEDLRRRDFTINAMAMTED 119
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ID GG DL+N+ I+ +GD R ED LR+LR RF ID L++ +
Sbjct: 120 LDIIDPFGGKEDLKNKVIRAVGDPDERFEEDALRMLRAIRFSGQLDFI-IDMKTLLSIRR 178
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ ++ ++ ER+ SEI+K+ ++ ++ + + K + + +
Sbjct: 179 HARLIRFIAVERLKSEIDKIFVNPCMQKSMAYLKDSVLTKFLPVGG-----------LFE 227
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ D + +K + K + + + L+ +
Sbjct: 228 VDWIPYQPDGKPTYGWFYLLHQQKRQFADIKDYRFSNGEK----KLIEKSLELTALNTWD 283
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ ++ L + + + + + + G D+++
Sbjct: 284 QWTFYKYTLEQ-----------LEMASRVTDKRENLAAIKRQLPIQSRSELAVDGWDLLE 332
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+ G G + + ++ + + +E +
Sbjct: 333 WSGAKSGPWLKVWIEKIERLIVYGILKNDKELIKDW 368
>gi|302345230|ref|YP_003813583.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Prevotella melaninogenica ATCC 25845]
gi|302148944|gb|ADK95206.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Prevotella melaninogenica ATCC 25845]
Length = 474
Score = 163 bits (411), Expect = 6e-38, Method: Composition-based stats.
Identities = 74/456 (16%), Positives = 163/456 (35%), Gaps = 56/456 (12%)
Query: 10 FHDSDLIN-ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ D+ + I + +K + +VGG VRD + DID+ +V
Sbjct: 12 LINKDIFHHISTAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVASELKVILG 71
Query: 69 K--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
K + ++GT ++ + + R + + +V + D RRDFTINA
Sbjct: 72 KKAHLSVFRNFGTAQVKYKNIEVEFVGARKESYSHDSRKPIVEDGTLEDDQNRRDFTINA 131
Query: 127 LYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ +++D GG++DL + I+ D +D LR++R RF I
Sbjct: 132 MAVCLNKARFGELVDPFGGIDDLWDGIIRTPLDPDVTFSDDPLRMMRCVRFATQLNFF-I 190
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ + A + + +KI+S ERI E+NK++ P + +Y G+ + I ++
Sbjct: 191 EDETFEALERNAERIKIISGERIEEELNKIMMTATPSKGFIELYRCGLLQLILPELVALD 250
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSL 287
+ + + + + + + LR+ L+ K F
Sbjct: 251 VVDTRNGRAHKNNFYHTLEVLDNICKHTDNLWLRWSALLHDVGKAKCKRWDATVGWTFHN 310
Query: 288 PREI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ ++ + + ++ E+
Sbjct: 311 HNFVGAKMVPTIFRRLKLPMDSKMKYVQKQVDLHMRPIAIADEEVTDSAVRRLMNDAGDD 370
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY-G 374
+ + L ++T ++ + L + ++ + G+++++
Sbjct: 371 IDDLMTLCEADITSKNAVRKQRFLDNFRIVREKLKDLKDRDYKRLLQPCVDGNEIMEMFN 430
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ P ++VG + K +++ +E L LLR+
Sbjct: 431 LKPSREVGVLKQTLKDAVLDNRVPNEREPLLALLRE 466
>gi|157964083|ref|YP_001498907.1| Poly(A) polymerase [Rickettsia massiliae MTU5]
gi|157843859|gb|ABV84360.1| Poly(A) polymerase [Rickettsia massiliae MTU5]
Length = 418
Score = 163 bits (411), Expect = 6e-38, Method: Composition-based stats.
Identities = 126/430 (29%), Positives = 191/430 (44%), Gaps = 53/430 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLM----NLSVQ------------------- 46
ILSLLN+ ++ ++GG VRD+L+ N + +
Sbjct: 11 IPSKGYRKILSLLNEKG-QARLIGGCVRDTLLDLLHNKTNKEEFAGSTYKLPLEASYPRD 69
Query: 47 -------DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI 99
DIDIAT + P V I S + K IPT + +GTI + F+ITTLR D+
Sbjct: 70 RLEKGSYDIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTITATLNNEKFEITTLRKDIE 129
Query: 100 TDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHH 158
+GR+AKV+FT D+ D+ RRDFTINAL ++ DY G DL+ + FIG+A
Sbjct: 130 CNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQQEKVVFIGEALD 189
Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218
RI EDYLRILRFFRF ++Y + +D A K GLK LS ERI SE++K++ +K
Sbjct: 190 RIKEDYLRILRFFRFSSYYANQ-LDDGNFKACKALKDGLKTLSRERIKSEMDKIIVSKRA 248
Query: 219 LNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI 278
+ M+ GI + IF +Q + Q + + + LL +
Sbjct: 249 AQILKAMFEIGILELIF-SIQNYEIKFFEQANDFKLELVTRYALLLYCQKDFN------- 300
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
L + + + ++S N + K + K + A
Sbjct: 301 LKVFLDWKFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNY--------KEYLLAASIIG 352
Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398
L H + ++ P F + G+D++ I K++G L + K WI F+
Sbjct: 353 KLNHSQVKEFILKYDALLR---PKFQVNGNDLLNMNIEK-KEIGIKLEYLKNFWIEQDFK 408
Query: 399 LSQEDLHHLL 408
S+ +L L
Sbjct: 409 PSKLELLEKL 418
>gi|293376425|ref|ZP_06622657.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Turicibacter sanguinis PC909]
gi|292644934|gb|EFF63012.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Turicibacter sanguinis PC909]
Length = 386
Score = 163 bits (411), Expect = 6e-38, Method: Composition-based stats.
Identities = 90/399 (22%), Positives = 170/399 (42%), Gaps = 35/399 (8%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+L+ L + ++ VGG VRD L+ + DIDI T+ PD V+ +F K I T I +
Sbjct: 10 VLNRLIENGYEAYFVGGMVRDRLLGRDIYDIDITTSAKPDVVIGLFE----KTIQTGIKH 65
Query: 78 GTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
GT+ ++ ++TT R R ++V FT D RRDFT+NA+ G +
Sbjct: 66 GTVTVMIEGIPVEVTTFRVEEAYEDFRRPSEVRFTSSLIEDLKRRDFTMNAIAESIDGTL 125
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
D GL DL NR IK +G+A R +ED LR+LR RF + G ++ + A +
Sbjct: 126 EDPFHGLKDLSNRQIKAVGEAKERFIEDPLRMLRGLRFMSKLGF-ELEDETSKAIGEVGA 184
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--EIFLDVQEISLDQLSQVIEAE 253
++ +S ERI EI ++ + L A + + + F +++ S L+++ E
Sbjct: 185 LIEHISKERIKKEIEGMVSGEFSLKAFNLLIHTPLCDSITYFKELKRYSSSNLARLEEGV 244
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313
++F + + + K + + + + C Q
Sbjct: 245 ELFA------------LIGLTVEEMEDYLKAWPFSNVEKRMIKAIRECYNKQLP-----P 287
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373
+ + Y Y + + + +I L + + L ++ + + D++++
Sbjct: 288 QYIQYKYKEDLALHYHRIQNVLKQSVEKFE--------LRELPITDRKELAIEVADIIQW 339
Query: 374 -GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
P G + +L + E + + + L + +++L
Sbjct: 340 INHPKGPWLSQLLEALEFEVVMGTLENEVVSLRNYIQQL 378
>gi|317128612|ref|YP_004094894.1| polynucleotide adenylyltransferase region [Bacillus
cellulosilyticus DSM 2522]
gi|315473560|gb|ADU30163.1| Polynucleotide adenylyltransferase region [Bacillus
cellulosilyticus DSM 2522]
Length = 385
Score = 163 bits (411), Expect = 6e-38, Method: Composition-based stats.
Identities = 69/401 (17%), Positives = 150/401 (37%), Gaps = 24/401 (5%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
++S I+IL+ L ++ IVGGAVRD L+ DIDI T ++ IF +
Sbjct: 4 NESAAIHILNSLESYGFEAFIVGGAVRDKLLKRKPNDIDICTKASIKQIQSIFPSS---- 59
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I ++GT+ + + +++T R+ +D RDFTINA+ D
Sbjct: 60 IHVGSNHGTLIVKIKGCTLEVSTYRARNGEKP---------TIYSDLSLRDFTINAMAID 110
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+G +ID G ++ + I+ + R +ED +R+LR R + + +
Sbjct: 111 IRGNIIDPYDGQLAIKRKVIEVVQSG-QRFIEDPIRLLRAIRIAKQLNFSIENKTSALLT 169
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
A ++ + + N + + F+ ++ ++ L +
Sbjct: 170 DSAHLIKEVAAERITAEFQKIVTAVLNKKEVCELVSGDVVQNIPFMFPEKKVIESLKRYP 229
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
V +L D + + + L +++ + + +S
Sbjct: 230 YEFIVKHHVEWWMLASFSY----DSNETVHILSELKLSKKVVKDITFI--SKLVIEVIST 283
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
YL G + +I K+ + + +L + +TG ++
Sbjct: 284 SWSDYHLYLLGRERLIFAEKLLSLIQMR---ENKSSILLDKYDSLPIHDNKELAITGQEL 340
Query: 371 VKYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+++ GK +G+ L ++ + + ++ + + L++
Sbjct: 341 LEWFPQERGKWIGDRLKKVEEAVVLNKVANEKKAIFNSLKR 381
>gi|183985441|ref|YP_001853732.1| poly(a) polymerase PcnA [Mycobacterium marinum M]
gi|183178767|gb|ACC43877.1| poly(a) polymerase PcnA [Mycobacterium marinum M]
Length = 481
Score = 163 bits (411), Expect = 6e-38, Method: Composition-based stats.
Identities = 87/455 (19%), Positives = 170/455 (37%), Gaps = 59/455 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTRYK 69
H + L + S +VGG+VRD+L+ D+D T P +V +I
Sbjct: 21 HAAVLGELGSAFADAGHDLYLVGGSVRDALLGRLKSPDLDFTTDARPQQVQKIVRSWADA 80
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
V T I +GTI I +ITT R+D R+ +V F + D +RRDFT+NA+
Sbjct: 81 VWDTGIEFGTIGIAKNDYRLEITTFRADSYDQVSRHPEVRFGERLEDDLVRRDFTVNAMA 140
Query: 129 ADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
G+ +D +GGL+ LR++ + +D LR+LR RF + G +
Sbjct: 141 VRITASGPGEFLDPLGGLSVLRDKVLDTPAAPSVSFGDDPLRMLRAARFVSQLGF-AVAP 199
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------ 238
A + L +S+ER+ +E++KLL +NP+ I M + G+ + + ++
Sbjct: 200 RVRDAIEEMAPQLARISAERVAAELDKLLLGENPVAGIDLMVHTGMGEVVLPEIGGMQMA 259
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK--------------- 276
+++ L+ + +A ++ + D +LR+ L+ K
Sbjct: 260 IDEHHQHKDVYQHSLTVLRQAIELEDDGPDLVLRWAALLHDIGKPTTRRHEANGGVSFHH 319
Query: 277 -------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
+ + +++ + + + Y+ ++
Sbjct: 320 HEVVGAKMVRKRMRALKYSKQMVDDVSQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGPLL 379
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGI 375
A+L + + + + + L G+ ++ I
Sbjct: 380 ARLHKLVRADCTTRNKRRAARLQASYDRLEERITELAAQEDLDRVRPDLDGNQIMTLLDI 439
Query: 376 PPGKKVGNILVHCKQEWIN-SSFQLS--QEDLHHL 407
P G +VG + K+ + + + +L
Sbjct: 440 PAGPQVGEAWRYLKELRLERGPLTIEEAKAELLSW 474
>gi|256028296|ref|ZP_05442130.1| Poly(A) polymerase [Fusobacterium sp. D11]
gi|289766225|ref|ZP_06525603.1| poly(A) polymerase [Fusobacterium sp. D11]
gi|289717780|gb|EFD81792.1| poly(A) polymerase [Fusobacterium sp. D11]
Length = 442
Score = 163 bits (411), Expect = 6e-38, Method: Composition-based stats.
Identities = 103/432 (23%), Positives = 187/432 (43%), Gaps = 44/432 (10%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I IL+ LN+ K IVGGA+RD L+ L +D+D AT + + + +FS+ K T
Sbjct: 14 IKILNKLNEYG-KGYIVGGAIRDILLGLKPKDVDFATNLSYETLKTLFSEYTPK--ETGK 70
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
S+G ++I ++I R D+ G+ KV F D + D RRDFTINA+ +Q+ +
Sbjct: 71 SFGVLRIRINNIDYEIAKFREDI--YGKEKKVSFVDDIRNDLARRDFTINAMAYNQKEGI 128
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
ID G D+ NR I FIG+A RI+ED LR+LR FRF + ++ + + A K K
Sbjct: 129 IDLYNGQKDIENRIINFIGNAEERIIEDPLRVLRSFRFMSRLNF-SLSENTIEAIKKQKD 187
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
LK + ERI E +KLL +N N + M + G+ + I + + +
Sbjct: 188 LLKNIPEERITMEFSKLLLGENIKNTLTLMKDTGVLELIIPEFKATYDFNQCNPHHNLDL 247
Query: 256 FEW--------KIDSLLRFIVLISWQ----------------------DKKSILSMAKKF 285
F D LR+ L+ + +
Sbjct: 248 FNHIINVVSKVPADLELRYSALLHDIAKPIVQTFDEKGIAHYKTHEIVGADMARDILARM 307
Query: 286 SLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344
LP ++ ++ + K ++ + +L G + ++ +A + +
Sbjct: 308 KLPVKLIDTVVEIIKKHMVLYKDITDKKFNELLSEMGYDNLWRLIEHSIADNSSKNNEVV 367
Query: 345 T------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398
+ + + + + + + G D+++ G GK++G I ++++ Q
Sbjct: 368 STENDLHERLKRAVEKQMQVRVNDLAVNGKDLIELGFT-GKEIGEIKKELLDKYLSEEIQ 426
Query: 399 LSQEDLHHLLRK 410
++E++ +++
Sbjct: 427 NNKEEMMEYVKE 438
>gi|227549419|ref|ZP_03979468.1| possible tRNA adenylyltransferase [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078496|gb|EEI16459.1| possible tRNA adenylyltransferase [Corynebacterium lipophiloflavum
DSM 44291]
Length = 493
Score = 163 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 85/459 (18%), Positives = 162/459 (35%), Gaps = 60/459 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L + +L + + +VGG VRD+++ D+D T+ P+ + I K T
Sbjct: 36 LEPLAALFAQRGESLYLVGGPVRDAMLGRLGNDLDFTTSARPEVIAEILGSWGEKTWDTG 95
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
I +GT+ I R + +ITT RSD R +V F + D +RRDF NA+ +
Sbjct: 96 IEFGTVSSIKRGQQVEITTFRSDLYDGVTRNPEVTFGDTLEGDLVRRDFACNAMAIELSL 155
Query: 134 K-------VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ D VGGL+D+ +R + +D LR+LR RF + G ++
Sbjct: 156 RDGTLSPAFHDPVGGLDDILHRVLDTPQAPEISFRDDPLRMLRAARFASQLGF-SVADRV 214
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A + + ++ ER+ +E++KL+ P I + GI + I +V + L+
Sbjct: 215 FTAMCEMAGEINRITVERVQAELDKLMLGTLPWEGIDLLVETGIAQHILPEVPALQLETD 274
Query: 247 SQVIEAE-------------QVFEWKIDSLLRFIVLISWQDKK----------------- 276
+ + ++ + D LR+ L+ K
Sbjct: 275 EHMQHKDVYRHSLTVLRQATELEDSGPDLELRWAALMHDIGKPATRAVKEGGGVSFHHHE 334
Query: 277 -----SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAK 328
+ P+ + + + + Y+ ++ K
Sbjct: 335 VVGAKMTRKRLRALKYPKHVIEDVGQLVYLHMRFHGFGEGQWTDSAVRRYVTDAGELLPK 394
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPP 377
L + + + + + + L G++++ G+ P
Sbjct: 395 LHKLVRADSTTRNAKKAKRLQRTYDHLEERIDQIAAKEDLARVRPDLDGNEIMSILGLSP 454
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G +VG K+ + E + L K S+
Sbjct: 455 GPEVGKAWNFMKELRLERGSLEHDEAVAEL--KAWWESE 491
>gi|298376033|ref|ZP_06985989.1| polyA polymerase family protein [Bacteroides sp. 3_1_19]
gi|298267070|gb|EFI08727.1| polyA polymerase family protein [Bacteroides sp. 3_1_19]
Length = 476
Score = 163 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 79/453 (17%), Positives = 159/453 (35%), Gaps = 55/453 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
I + + ++GG VRD +N +DID+ + + +K +
Sbjct: 12 ISAKPFHLISEAAEELGVEVYVIGGYVRDIFLNRPSKDIDVVAVGSGIELAKRVAKKIGR 71
Query: 70 --VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT ++ + R + + VV + D RRDFTINAL
Sbjct: 72 GAYLSVFKNFGTAQVKAGDLELEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAL 131
Query: 128 YADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+ D GGL D+ TI+ D +D LR++R RF G ID
Sbjct: 132 ALCLNKERYGELVDPFGGLEDMDELTIRTPLDPDITFSDDPLRMMRAVRFATQLGFF-ID 190
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-- 241
D A I+ ++ + I+S ERI E+NK++ + P + G+ IF ++ +
Sbjct: 191 PDTFDAIIRNRERISIISKERIVDELNKIVLSPKPSIGFDLLDKCGLLPLIFPELCALKG 250
Query: 242 ---------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----- 287
+ ++ +++ + + LR+ L K + +
Sbjct: 251 VETKEGIGHKDNFAHTLMVLDRLSKTSDNLWLRWSALFHDIAKPATKRFDPRLGWTFHNH 310
Query: 288 ------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
E ++ + + LS E+ +
Sbjct: 311 NFIGERMIPGIFRKMKLPMNEKMKYVQKMVSLHMRPIALSDDEVTDSAIRRLLFDAGDDI 370
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGI 375
+ L ++T ++ + + L++ ++ P++G+++++ +G+
Sbjct: 371 DDLMKLCEADITSKNPEKVRRFLNNFRKVREKLADIEEKDRVRNFQPPVSGEEIMETFGL 430
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
P K VG + K ++ E L
Sbjct: 431 APSKPVGVLKEAIKNAILDGVIPNEYEAARQFL 463
>gi|118620062|ref|YP_908394.1| poly(a) polymerase PcnA [Mycobacterium ulcerans Agy99]
gi|118572172|gb|ABL06923.1| poly(a) polymerase PcnA [Mycobacterium ulcerans Agy99]
Length = 481
Score = 163 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 87/453 (19%), Positives = 170/453 (37%), Gaps = 56/453 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTRYK 69
H + L + S +VGG+VRD+L+ D+D T P ++++I
Sbjct: 21 HAAVLRELGSAFADAGHDLYLVGGSVRDALLGRLKSPDLDFTTDARPQQILKIVRPWADA 80
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
V T I +GTI I +ITT R+D R+ +V F + D +RRDFT+NA+
Sbjct: 81 VWDTGIEFGTIGIAKNDYRLEITTFRADSYDQVSRHPEVRFGERLEDDLVRRDFTVNAMA 140
Query: 129 ADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
G+ +D +GGL+ LR++ + +D LR+LR RF + G +
Sbjct: 141 VRITASGPGEFLDPLGGLSVLRDKVLDTPAAPSVSFGDDPLRMLRAARFVSQLGF-AVAP 199
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------ 238
A + L +S+ER+ +E++KLL ++P+ I M + G+ + + ++
Sbjct: 200 RVRDAIEEMAPQLARISAERVAAELDKLLLGEDPVAGIDLMVHTGMGEVVLPEIGGMQMA 259
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM---------- 281
+++ L+ + +A ++ + D LR+ L+ K +
Sbjct: 260 IDEHHQHKDVYQHSLTVLRQAIELEDEGPDLALRWAALLHDIGKPATRRHEANGGVSFHH 319
Query: 282 ------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
+ +++ + + + Y+ ++
Sbjct: 320 HEVVGAKMVRNRMRALKYSKQMVDDVSQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGPLL 379
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGI 375
A+L + + + + + L G+ ++ I
Sbjct: 380 ARLHKLVRADCTTRNKRRAARLQSSYDRLEERITELAAQEDLDRVRPDLDGNQIMTLLDI 439
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
P G +VG + K+ + +E LL
Sbjct: 440 PAGPQVGEAWRYLKELRLERGPLTIEEAKAELL 472
>gi|160944761|ref|ZP_02091988.1| hypothetical protein FAEPRAM212_02276 [Faecalibacterium prausnitzii
M21/2]
gi|158443945|gb|EDP20949.1| hypothetical protein FAEPRAM212_02276 [Faecalibacterium prausnitzii
M21/2]
Length = 444
Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats.
Identities = 94/425 (22%), Positives = 161/425 (37%), Gaps = 54/425 (12%)
Query: 35 AVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTL 94
VRDSL+ + D D+ T+ LP +VM +F + IPT + +GT+ I + ++ TT
Sbjct: 29 CVRDSLLGRTAHDWDLCTSALPQQVMELFGTE--QCIPTGLQHGTVTIKYGGQLYETTTF 86
Query: 95 RSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKF 152
R++ TDGR+ V F D + D RRDFTINA+ + ++D GG DL+N ++
Sbjct: 87 RTEGSYTDGRHPDAVQFVPDVREDLARRDFTINAMAYNAAEGLVDPFGGQKDLQNGLLRA 146
Query: 153 IGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKL 212
+G+ R ED LRILR +RF A +G + A A I + E+ KL
Sbjct: 147 VGEPQQRFTEDALRILRLYRFAARFGFTLDAATARAARQLAPHLDCISAERIQ-EELAKL 205
Query: 213 LEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW 272
L A P + + + ++ +L+ V++A E + +R+ L+
Sbjct: 206 LVAPQPGAYLE----PAVLAVVLPELTPAALEAAKPVVDACPAGEENLP--VRWAALLGT 259
Query: 273 QDKKSILSMAKKFSLPREIRYFLISFFN-------------------------------- 300
+ + K+
Sbjct: 260 LGEADTRRVLKRLRCSNACIEETAVLVRETAGEGVCGSFLLGHESGHSIARPTACGSRVP 319
Query: 301 ---------CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH--YNNLTHQDTCFIL 349
+ S +++L YG + + AL
Sbjct: 320 PQRTVLGETPAHAPERASDIHLRRLLGRYGLCTVERLCALCAALRPQAAPACALAAQRAR 379
Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
Q+ +D + + + G D++ GIP G + +L I + + + L +
Sbjct: 380 QLEADGVCCRVRQLAVNGRDLMAAGIPAGPALRRVLEALLDGVIRAEYPNEKPALLAAAQ 439
Query: 410 KLIAS 414
K+IAS
Sbjct: 440 KIIAS 444
>gi|333029157|ref|ZP_08457218.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Bacteroides coprosuis DSM 18011]
gi|332739754|gb|EGJ70236.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Bacteroides coprosuis DSM 18011]
Length = 481
Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats.
Identities = 72/453 (15%), Positives = 158/453 (34%), Gaps = 55/453 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
F I ++ + +VGG VRD ++ DID+ ++ ++ +
Sbjct: 13 FDSPIFHQISQTADELNLECYVVGGYVRDIFLDRPSTDIDVVVVGSGIKIAEALTRKLGR 72
Query: 70 --VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT ++ + + R + +V + D RRDFTINA+
Sbjct: 73 GANLSVFKNFGTAQVKYKNLEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINAM 132
Query: 128 YADQQGKV----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+ ID G+ DL +TI+ D +D LR++R RF I+
Sbjct: 133 AVCLNQERFGELIDPFNGMKDLEEKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IE 191
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-- 241
D + + + ++I+S ERI E+NK++ + P V + G+ IF ++ +
Sbjct: 192 DDTFDSLARNHERIEIISKERIADELNKIILSPVPSKGFVDLDRSGLLALIFPELLALQG 251
Query: 242 ---------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----- 287
+ + + + + + LR+ L+ K + K
Sbjct: 252 VETVNGRGHKDNFYHTLQVLDNICQATDNLWLRWAALLHDIAKPATKRWDPKAGWTFHNH 311
Query: 288 ------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
E ++ + ++ E+ +
Sbjct: 312 NFIGEKMIPKIFRKMKLPMNEKMKYVQKLVRLHMRPIVIADDEVTDSAVRRLLFEAGDDI 371
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVKY-GI 375
+ L ++T ++ + L++ + P++G+++++ +
Sbjct: 372 DDLMTLCEADITSKNLERKQRFLNNFALVRRKLKSIEEKDRVRNFQPPISGEEIMEMFNL 431
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
PP K+VG++ K ++ + + L
Sbjct: 432 PPSKEVGSLKTAIKDAILDGVIPNEYDAAFNFL 464
>gi|307718754|ref|YP_003874286.1| polyA polymerase family protein [Spirochaeta thermophila DSM 6192]
gi|306532479|gb|ADN02013.1| polyA polymerase family protein [Spirochaeta thermophila DSM 6192]
Length = 421
Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats.
Identities = 96/420 (22%), Positives = 162/420 (38%), Gaps = 51/420 (12%)
Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR-SDLI 99
+ D D+AT P VM++F +VIPT I +GT+ I+ R ++ITT R
Sbjct: 3 LGTPPDDYDLATDAPPREVMKLFR----RVIPTGIQHGTVTIVFRDHCYEITTFRVETSY 58
Query: 100 TDGRYAKV-VFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAH 157
+DGR+ FT + D RRDFTINA+ D G+ D G +D++ R IK IG+
Sbjct: 59 SDGRHPDEVRFTTSLEEDLSRRDFTINAMALDPLTGEFFDPFDGYSDIKRRLIKAIGNPE 118
Query: 158 HRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKN 217
R ED LRILR RF +I+ + A + + L+ +S ERI E++K++EA
Sbjct: 119 ERFEEDALRILRAIRFATQLSF-SIEQETYAAIGRHAEYLRRISWERIRDELSKIMEAVR 177
Query: 218 PLNAIVHMYNGGIFKEIFLDVQE---------ISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
P + M GI + ++++ D L ++ D LR+
Sbjct: 178 PSQGFLRMEETGILSIVVPELKKCRGVPQSPPHRFDVLDHLLHTCDALPPS-DPPLRWAG 236
Query: 269 LISWQDKKSIL----------------------SMAKKFSLPREIRYFLISFFNCNFNQ- 305
L+ K L + K+ P + + +
Sbjct: 237 LLHDIGKPETLSEDDLGGIHFHRHEHVSSHLAQHILKRLKFPNAVIQDVSHLIRHHMFDY 296
Query: 306 -KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD--------TCFILQVLSDII 356
+ +++ + G + + +K+ +A ++L++
Sbjct: 297 TPDWTDAAVRRFLHRTGPEYLERLIKLRIADRIGMTGETAPSHDLAGLKARAERLLAENT 356
Query: 357 HWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ G + + GIPPG +G L + Q ++ L L R
Sbjct: 357 PLSIKDLAVDGHILKEDAGIPPGPWMGKTLRFLLDAVLEDPSQNTRARLTELARNFYTQR 416
>gi|296118581|ref|ZP_06837159.1| tRNA adenylyltransferase [Corynebacterium ammoniagenes DSM 20306]
gi|295968480|gb|EFG81727.1| tRNA adenylyltransferase [Corynebacterium ammoniagenes DSM 20306]
Length = 478
Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats.
Identities = 80/458 (17%), Positives = 165/458 (36%), Gaps = 55/458 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
L ++S + +VGG+VRD+L+ D+D T P V I
Sbjct: 23 SDLLSGLISEFARRNHTLYLVGGSVRDALLGRLGNDLDFTTDARPQVVHEILDSWAETTW 82
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I +GT+ + + + +ITT R+D D R +V F D +RRDF +NA+ +
Sbjct: 83 DTGIEFGTVSAVYKGQQIEITTFRADLYDGDSRNPEVTFGNTLDDDLIRRDFKVNAMAIE 142
Query: 131 QQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ + D + GL DL+ + +D LR+LR RF + + +
Sbjct: 143 LRADGTREFFDPMEGLKDLQAGIMDTPDAPELSFRDDPLRMLRAARFVSQL-QFGVSDRV 201
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ- 245
A + ++ ++ ERI E++K++ P + I + G+ + IF ++ ++++
Sbjct: 202 RQAMTDMAEEIRRITVERIQVEMDKMILGVAPWDGIDLLVETGLAQIIFPEIPAMAMEPD 261
Query: 246 ------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------- 277
L+ + +A + E D +LR+ L+ K
Sbjct: 262 EHAQHKDVYAHSLTVLRQAMEQEEDGPDLVLRWAALLHDIGKPDTRDVTDGKVSFHQHEI 321
Query: 278 -----ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKL 329
++ P+ + + + Y+ ++ +L
Sbjct: 322 VGAKLARRRMRQLKYPKATTQEVSELVRLHMRFHGFGEGQWTDSAVRRYVNDAGELLPRL 381
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPG 378
+ + + + + L G+++++ + PG
Sbjct: 382 HKLVRADCTTRNERKARRLQRTYDHLEERIEEIQEKEGIAAIRPDLDGNEIMEILDLKPG 441
Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+VG + K + L +++ LR+ S +
Sbjct: 442 PEVGQAWAYMKDLRLELG-PLERDEAIAKLRQWWESKK 478
>gi|225850507|ref|YP_002730741.1| poly A polymerase [Persephonella marina EX-H1]
gi|225645716|gb|ACO03902.1| poly A polymerase [Persephonella marina EX-H1]
Length = 865
Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats.
Identities = 80/411 (19%), Positives = 157/411 (38%), Gaps = 23/411 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+L I + + ++ +VGG VRD +M DIDI +++ ++K
Sbjct: 462 ELKKIGVIAKRSGFRAYLVGGIVRDIVMKRKNLDIDIIVEGDAIELVKKYAKENNYRYYY 521
Query: 74 SISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA--- 129
+ T ++ D T R ++ V K D RRDFTIN L
Sbjct: 522 FEEFMTAQVTLPSGLKIDFATARKEIYEYPGAYPKVRKASIKEDLYRRDFTINTLAIEIT 581
Query: 130 -DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGL 187
D G +ID+ GL D++++ I+ + +ED +RILR RF +G K ++ L
Sbjct: 582 EDNFGTLIDFFNGLRDIKDKVIRILHQ--LSFIEDPVRILRAVRFAGRFGFKIGKMTERL 639
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----QEIS 242
+ + L + + R+ +E++ + I M I ++ + +E
Sbjct: 640 LKLAVDENLLLVAPTGRVNTELSYSFNEEKATEIIYLMNRYKILHQLIPEFVFDDKREEV 699
Query: 243 LDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+++L +I E F K+D + +++ + + I + + FF+
Sbjct: 700 INRLRDMIVTFEIFFGHKVDRVANYLLALMYHLPLDISYQFLERYHFSNGKQLFKLFFSV 759
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
IPE Y+ + L + ++ + + +
Sbjct: 760 KGR--FRKIPEKNSELYMIIKNIKKDVLVFLCSYLPAEISERIIYILKKEEER------- 810
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+TG+D+ + G+ P IL ++++ + +E L +L K
Sbjct: 811 KLLITGNDLKELGLKPSPLFKEILDEIFLKYLDGEIKNRREALEYLKNKYK 861
>gi|297627555|ref|YP_003689318.1| tRNA nucleotidyltransferase PcnB [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296923320|emb|CBL57920.1| tRNA nucleotidyltransferase PcnB [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 496
Score = 162 bits (409), Expect = 9e-38, Method: Composition-based stats.
Identities = 87/471 (18%), Positives = 169/471 (35%), Gaps = 72/471 (15%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L +K ++ +VGG+VRD+L+ D+D T+ PD R+ + V
Sbjct: 23 TPVIDELGALFHKAGEELYLVGGSVRDALLGRLGHDLDFTTSADPDTTERLLHRFSSAVW 82
Query: 72 PTSISYGTIKI----ICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+GTI + +ITT R+D D R V + + + D +RRDFT+NA
Sbjct: 83 TVGKEFGTIGASKKSNGHELQIEITTFRADAYEPDSRKPIVAYGDNVQDDLVRRDFTVNA 142
Query: 127 LYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ D K +D GG+ DL + ++ +D LR++R RF A G +D
Sbjct: 143 MAIDVHSKAFVDPHGGIRDLAAKVLRTPTAPEISFSDDPLRMMRACRFAAQLGF-KVDPV 201
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
A + ++I+S ER+ E++KLL A P + + G+ + ++ + L++
Sbjct: 202 TFNAMKAMHERIEIVSPERVRDELSKLLLADAPRPGLNLLVASGLADIVLPELPAMRLER 261
Query: 246 LSQVIEA-------------------------EQVFEWKIDSLLRFIVLISWQDKKS--- 277
+ + D ++R L+ K +
Sbjct: 262 DEHFRHKDVYEHSLTVLDQAIALEKARDYKDGKPNPHHQPDLVIRLAALLHDIGKPATRG 321
Query: 278 ------------------ILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIK 314
+ P+ + + + + + ++
Sbjct: 322 LDGDKVTFHHHDIVGAKLARKRLRALHYPKAVVDAVGQLIEQHLRFHGYGEASWTDSAVR 381
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFP 364
+ GD+ + L I + + + ++ K
Sbjct: 382 RYVRDAGDQ--LEHLHILTRSDCTTRNARKADTLRRAYDELEARIDELAATEELKSIRPD 439
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
L GD+++ GI PG +VG H ++ L + L++ A+
Sbjct: 440 LNGDEIMTILGIAPGPQVGRAYQHMLSVRMDQG-PLDHDAAVAELKRWWAA 489
>gi|302335866|ref|YP_003801073.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Olsenella uli DSM 7084]
gi|301319706|gb|ADK68193.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Olsenella uli DSM 7084]
Length = 464
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 80/444 (18%), Positives = 157/444 (35%), Gaps = 52/444 (11%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ ++ L ++ +VGG VRD+L+ D+D+ T+ + R+ +V T
Sbjct: 15 ALRVVFALESAGFEAWVVGGWVRDALLGTPSHDVDVTTSAPWEAAARVLRAAGIEVHETG 74
Query: 75 ISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQ 132
+++GT+ + + + TT R +D R+ V F D + D RRD T+NA+
Sbjct: 75 VAHGTVTAVVDGRAVETTTYRVEGSYSDHRHPDEVLFVDDIRDDLARRDLTVNAMAYHPA 134
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK------------ 180
++D GG DL I+ +G R ED LR+LR RF G
Sbjct: 135 RGLLDPFGGREDLATGVIRAVGVPRRRFEEDALRVLRAVRFACRLGFVVEPHTQEALVAC 194
Query: 181 -----NIDSDGLVASIKAKKGLKILSSERIWS-----------EINKLLEAKNPLNAIVH 224
+I + + + G + + ++P +A
Sbjct: 195 ARGLGDIARERIGQELDGIVGTGRMGWALTHETEVLSAAIPEIAAMVGFDQRSPYHAFDV 254
Query: 225 M----YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQ-DKKSIL 279
+ + +E + L + + + + + ID R +
Sbjct: 255 LTHTAHVCHAVEEFTGGMASSELRWAALLHDVAKPQTFTIDETGRGHFYGHPKVGADMAA 314
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF----------------YLYGDK 323
++ ++ +LP ++ + + + + + I++ L K
Sbjct: 315 AIMRRLALPGDLVAPVRALVRLHDHVVKPTGRSIRRTLLKFENACPGRALELTFALLDLK 374
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
A K+ A Y + + + + ++ W+ ++G DV+ GI PG VG
Sbjct: 375 RADAASKVSSAAKYAIDLDRMSAAVREEVARGGAWRLRDLDVSGADVIACLGISPGPAVG 434
Query: 383 NILVHCKQEWINSSFQLSQEDLHH 406
IL +N + L
Sbjct: 435 IILNEMLSSVVNGDVPNERRALLA 458
>gi|19554274|ref|NP_602276.1| putative polynucleotide polymerase [Corynebacterium glutamicum ATCC
13032]
gi|62391931|ref|YP_227333.1| polyA polymerase [Corynebacterium glutamicum ATCC 13032]
gi|41223078|emb|CAF19023.1| POLYA POLYMERASE [Corynebacterium glutamicum ATCC 13032]
Length = 494
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 83/449 (18%), Positives = 159/449 (35%), Gaps = 56/449 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L+ + + + +VGG+VRD+ + D+D T+ P+ I V T
Sbjct: 39 LVPLAAAFSSKGHSLYLVGGSVRDAFLGELGHDLDFTTSARPEETKAILDDYADVVWDTG 98
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
I++GT+ + +ITT RSD + R +V F + D +RRDF +NA+ + Q
Sbjct: 99 IAFGTLSAEKHGQQIEITTFRSDLYDGNSRNPEVTFGDTLEGDLIRRDFKVNAMAVEIQA 158
Query: 134 ----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D VGGL DL T+ +D LR+LR RF + + + A
Sbjct: 159 DGELTFHDPVGGLEDLLTHTLDTPATPEQSFNDDPLRMLRAARFVSQLNF-TLAPRVITA 217
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ + + ++ ER+ E++K++ KNP I M GI + I+ ++ + + Q +
Sbjct: 218 MTEMAQQITRITVERMQVELDKMILGKNPEAGIDLMVESGIAQIIYPEIPAMQMTQDEHM 277
Query: 250 IEAE-------------QVFEWKIDSLLRFIVLISWQDKKS------------------- 277
+ E D +LR+ L+ K
Sbjct: 278 QHKDVYAHSLQVMRQAIDQEEDGPDLVLRWAALLHDCGKPDTRDFNEEGRVSFHQHEVVG 337
Query: 278 ---ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
+ +K +++ + + S + Y ++ +L
Sbjct: 338 AKLVRRRMRKLKYSKQMVGDVGQLVFLHMRFHGFSEGQWTDSAVRRYAADAGELLPRLHK 397
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + + + L G+++++ I G +
Sbjct: 398 LVRADCTTRNKRKAARLQATYDHLEERIAEIAAKEDLARVRPDLDGNEIMEILNIQAGPE 457
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLR 409
VG K+ + L +E L+
Sbjct: 458 VGKAWAFLKELRLERG-PLDREVAIAELK 485
>gi|229004419|ref|ZP_04162169.1| CCA-adding enzyme [Bacillus mycoides Rock1-4]
gi|228756836|gb|EEM06131.1| CCA-adding enzyme [Bacillus mycoides Rock1-4]
Length = 366
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 85/379 (22%), Positives = 164/379 (43%), Gaps = 19/379 (5%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82
+ ++ VGG+VRD ++N + DIDIAT+ LP+ VM +F + +P + +GT+ +
Sbjct: 2 KQHGHEAYFVGGSVRDFIINRPIGDIDIATSALPEEVMHLFPRH----VPVGLEHGTVIV 57
Query: 83 ICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140
+ +++TT R+ D R + V F R + D RRDFT+NA+ +++G +ID
Sbjct: 58 VQEGIPYEVTTFRTESDYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMNEEGNIIDLFA 117
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200
G +R + I +G+A R ED LR++R RF + G ++ A + L+ +
Sbjct: 118 GQEAIRKQEIATVGNAADRFQEDALRMMRGIRFVSTLGFF-LEEQTKRAIEEYGHLLEHI 176
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ ERI E KLL K +N + + + L ++S +++ + ++ F
Sbjct: 177 AIERITVEFEKLLTGKYCVNGLQQLVETKL--VTHLPYLQMSEERILKAMQYNWDFFETD 234
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
F + ++ S+ KFS + + + K+ Y
Sbjct: 235 IEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVILAIRSRKTKSWDAV----FLYKT 290
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI---PP 377
G + +++ A+ + + + + ++G+D+ G P
Sbjct: 291 GLHTALMAERVYQAI-IKKYDIFSVNQVQSLFDSLSIHNRQEMKVSGNDL--LGWTEKTP 347
Query: 378 GKKVGNILVHCKQEWINSS 396
G V +L ++E +
Sbjct: 348 GPWVAEVLQRIEEEILQER 366
>gi|307565902|ref|ZP_07628361.1| HDIG domain protein [Prevotella amnii CRIS 21A-A]
gi|307345330|gb|EFN90708.1| HDIG domain protein [Prevotella amnii CRIS 21A-A]
Length = 474
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 76/460 (16%), Positives = 161/460 (35%), Gaps = 56/460 (12%)
Query: 10 FHDSDLIN-ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ D+ + I +K + +VGG VRD + DID+ +V
Sbjct: 12 LLNKDIFHNISKAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIKVAHELKNILG 71
Query: 69 KV--IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
K I ++GT ++ + + R + + +V + D RRDFTINA
Sbjct: 72 KQAHISIFKNFGTAQVKYKNIEVEFVGARKESYSHDSRKPLVENGTLEDDQNRRDFTINA 131
Query: 127 LYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ +ID GG++DL + I+ D +D LR++R RF I
Sbjct: 132 MAICLNSHLFGKLIDPFGGIDDLWDGIIRTPLDPDVTFSDDPLRMMRCVRFATQLNFF-I 190
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ D A + + +KI+S+ERI E+NK++ K P V + G+ + I ++
Sbjct: 191 EDDTFAALERNAERIKIISNERIIEELNKIIMTKTPSKGFVDLQRCGLLQIIMPELTSMD 250
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL---- 287
+ + + + + + + LR+ L+ K
Sbjct: 251 VVDIKNGRAHKNNFYHTLEVLDNICKKTNNIWLRWAALLHDIGKPKCKRWDNIIGWTFHN 310
Query: 288 -------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + ++ E+
Sbjct: 311 HNIVGANMVPKLFRRMKLPMDMKMKYVRKLVDMHMRPIAIADKEVTDSAVRRLINDAGND 370
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YG 374
+ + L ++T ++ + L++ ++ + G+++++ +
Sbjct: 371 IDDLMTLCEADITSKNEVRKQRFLNNFKIVREKIEALKEQDYKRLLQPCIDGNEIMEIFH 430
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ P +VG + K+ +++ +E L LL +
Sbjct: 431 LKPSYEVGLLKKSLKEAILDNKVPNEREPLLKLLNETAKE 470
>gi|284993422|ref|YP_003411977.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Geodermatophilus obscurus DSM 43160]
gi|284066668|gb|ADB77606.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Geodermatophilus obscurus DSM 43160]
Length = 487
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 87/471 (18%), Positives = 153/471 (32%), Gaps = 69/471 (14%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLM----------NLSVQDIDIATTILPDRVMR 61
L + + +VGG+VRD+L+ ++ D+D+ T P++V+
Sbjct: 16 SPVLTRLGERFTAAGFEVHLVGGSVRDALLSAGSAGGRGTGMAPGDLDVTTDARPEQVLD 75
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRR 120
+ + I++GT+ +ITT R + R +V + D RR
Sbjct: 76 LLRGFASSTWNSGIAFGTVGAEVDGVRLEITTFRADRYDRESRNPEVAWGDSLVDDLARR 135
Query: 121 DFTINALY--ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
DFT+NA+ V D GGL DL ++ G A +D LR+LR RF A G
Sbjct: 136 DFTVNAMAVSLGPDRTVTDPYGGLGDLLAGRLRTPGAAEDSFADDPLRMLRAVRFVAQLG 195
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-------------- 224
+D + A + +I ++K L +P A+
Sbjct: 196 LTPVDEVVAAMTSLAPELGRITPERVQVE-LSKTLLQHSPRAALELFVATGLADVVLPEL 254
Query: 225 --MYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE--WKIDSLLRFIVLISWQDKKSILS 280
+ DV SL L + I E+ D +LR L+ K +
Sbjct: 255 SALRMEIDEHHQHKDVYTHSLTVLDRAIALEEADPDAESPDLVLRLAALLHDIGKPATRR 314
Query: 281 M----------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK--- 315
+ +E+ + + E
Sbjct: 315 HEPRGRVSFHHHEVVGAKLVRKRLQALRYSKEVVESVARLTFLHLRFHGYGRGEWTDSAV 374
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPL 365
Y+ ++ +L + + + + + L
Sbjct: 375 RRYVTDAGDLLPRLHKLVRSDCTTRNKRRAAALSATYDALERRIAELSAAEDLARVRPDL 434
Query: 366 TGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
G+ +++ GIPPG++VG H K + L+ E+ LR A+
Sbjct: 435 DGNAIMEILGIPPGREVGEAWKHLKDLRLERG-PLAPEEAEAELRSWWAAR 484
>gi|188527511|ref|YP_001910198.1| poly(A) polymerase [Helicobacter pylori Shi470]
gi|188143751|gb|ACD48168.1| poly(A) polymerase [Helicobacter pylori Shi470]
Length = 388
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 93/403 (23%), Positives = 151/403 (37%), Gaps = 22/403 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ D +L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELDKELQELFDIYEKSSHELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--ADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + + D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ VID G N + N+ I+ +G A R ED LRILR RF A G I
Sbjct: 122 IAYSPTKGVIDPFKGQNAIENQIIECVGGARLRFFEDALRILRALRFSAILGF-KIAPST 180
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A K LK LS ER+ SE+NK L KN ++
Sbjct: 181 KEAIFACKDLLKHLSKERLQSELNKFLMGKNAYEVAK------------------EYQEI 222
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+++ E++ F + + + P++ + C+ +
Sbjct: 223 LELVTQEKIENLGFLKNAPFNLGLRLLGFFKHQKSLENLRYPKKTCVLFLKAKECHKDFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ + +KK L
Sbjct: 283 NIHNKTGLKFLLKNYDLEPFNLALDFYALKNPKCALKIKSLLKEIFNANEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +K+G IL C I S E L +R
Sbjct: 343 GGTLQNLGYRR-QKIGEILNACLNLVIAHPENNSLERLVEWVR 384
>gi|282880095|ref|ZP_06288815.1| hypothetical protein HMPREF9019_1920 [Prevotella timonensis CRIS
5C-B1]
gi|281305968|gb|EFA98008.1| hypothetical protein HMPREF9019_1920 [Prevotella timonensis CRIS
5C-B1]
Length = 475
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 77/453 (16%), Positives = 156/453 (34%), Gaps = 55/453 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I ++ + + + +VGG VRD + DID+ V + K
Sbjct: 13 LDNDIFHQISAVADHLDVECYVVGGYVRDLFLERPSNDIDVVVVGSGIEVAAALKQKLGK 72
Query: 70 --VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT +I + + R + + VV + D RRDFTINAL
Sbjct: 73 RAYLSVFRNFGTAQIKFKGMEIEFVGARKESYSHDSRKPVVENGTLEDDQNRRDFTINAL 132
Query: 128 YADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+++D GL DL + I+ D +D LR+LR RF I+
Sbjct: 133 AVCLNQARFGELVDPFDGLLDLEDGLIRTPLDPDITFSDDPLRMLRCVRFSTQLKFF-IE 191
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----- 238
+ A + + +KI+S ERI E+NK++ +P + +Y G+ + I ++
Sbjct: 192 DETFEALRRNAERIKIVSGERIADELNKIMMTDHPSRGFIELYRCGLLELILPELVAMDQ 251
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSLP 288
+ + + + + + LR+ L K F
Sbjct: 252 VDTKNGRAHKNNFYHTLEVVDNICQHTDKLWLRWAALFHDIGKPRSKRWDSLVGWTFHNH 311
Query: 289 REI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
I ++ + + ++ E+ +
Sbjct: 312 NFIGAKMVPGIFRRLKFPLDAKMKYVQKLVDMHMRPIAIADDEVTDSAVRRLMNDAADDI 371
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY-GI 375
+ L ++T +++ + L + + + G+++++ +
Sbjct: 372 DDLMTLCEADITSKNSQRKKRFLDNFRIVRAKLDDLKERDYKRLLQPCIDGNEIMELFHL 431
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
P K+VG + K +++ +E L LL
Sbjct: 432 KPSKEVGALKQALKDAVLDNKVPNEREPLMKLL 464
>gi|312888916|ref|ZP_07748477.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Mucilaginibacter paludis DSM 18603]
gi|311298606|gb|EFQ75714.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Mucilaginibacter paludis DSM 18603]
Length = 472
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 86/451 (19%), Positives = 158/451 (35%), Gaps = 53/451 (11%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
I S K E + ++GG VRD +N +DIDI +
Sbjct: 5 LQHPIFNIISSAAQKMEVDAYVIGGFVRDLYLNRPSKDIDIVVVGNGIAFAEQVAAKLRV 64
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ ++GT + + + R + +V + D RRDFTINAL
Sbjct: 65 PLSVFKNFGTAMLKYQDMEIEFVGARKESYRSESRKPIVENGTLEDDQKRRDFTINALAI 124
Query: 130 DQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
K +ID GG+ DL+N+ I+ D +D LRI+R RF + + ID
Sbjct: 125 ALHPKQFGQLIDPFGGITDLQNKLIRTPLDPVETFSDDPLRIMRAVRFASQLNFQ-IDES 183
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---- 241
L A + I+S ERI E+NK++ + P H++N G+ K IF + ++
Sbjct: 184 ALAAISTTASRISIVSQERITDELNKIILSPIPSIGFKHLFNTGLLKAIFPQMVDLYGVD 243
Query: 242 -------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP------ 288
+ + + + E D LR+ ++ K + +
Sbjct: 244 IIKGKGHKDNFYHTLEVLDHIAETTNDLWLRWAAILHDIAKPATKRFEEGHGWTFHGHED 303
Query: 289 -----------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
E + + L+ I ++
Sbjct: 304 KGARMVPKIFAQLKLPLNEKMKLVQKLVQLHLRPIVLAQDIITDSAVRRLLFEAGDDIES 363
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY-GIPP 377
+ L ++T ++ I + + ++ P++G D+++ GI
Sbjct: 364 LMLLCKADITTKNEYKIKKYRQNFERVQEKLKQVEERDKIRNWQPPVSGLDIMELFGIRE 423
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G++VG I ++ ++ S+E +
Sbjct: 424 GREVGIIKQKIREAILDGEISNSRETAINYA 454
>gi|311746152|ref|ZP_07719937.1| polyA polymerase family protein [Algoriphagus sp. PR1]
gi|126576375|gb|EAZ80653.1| polyA polymerase family protein [Algoriphagus sp. PR1]
Length = 483
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 81/456 (17%), Positives = 157/456 (34%), Gaps = 58/456 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSKTRYKVIP- 72
+ ++ +VGG VRD ++N DID + +K +P
Sbjct: 15 KVAKAAQDLGLEAYVVGGYVRDLILNRKKSDKRDIDFTCVGSGIELAEEVAKNFDYHVPV 74
Query: 73 -TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
++GT + + + R + +V + D RRDFTINA+
Sbjct: 75 SVFKNFGTAMVKLEEWELEFVGARKESYRSESRKPIVEDGTLQEDLERRDFTINAMAISL 134
Query: 132 QGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D GL DL+ +TI+ + +D LR+LR RF A +ID D
Sbjct: 135 HASNYGDLLDPFEGLVDLKRKTIRTPLEPSITFSDDPLRMLRAIRFAAQLDF-DIDPDTF 193
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--------- 238
A + L+I+S ERI E+NK++ P ++ + E F ++
Sbjct: 194 YAITQNAHRLRIISGERIIDELNKIMLVPKPSYGFKLLFASKLLHEFFPEMVELQGVDSV 253
Query: 239 --QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM-----AKKFSLPREI 291
+ + + + V D LR+ ++ K + +
Sbjct: 254 DDKSHKDNFYHTLQVLDNVSVMSEDLWLRWAAVLHDIAKPATKRFNKKVGWTFHGHEDKG 313
Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AKLKIFL 333
F + ++KL L+ + + + +
Sbjct: 314 ARMTPGIFRRLKLPMDDRMKFVQKLVRLHLRPIALVKDEVTDSALRRLLFDAGDDIDSLM 373
Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGIPPGK 379
L ++T ++ + + L + +K P++G+++++ +G+ P K
Sbjct: 374 KLCRADVTSKNNRRVKRYLENFDKVEKKLMEVEEKDQVRNFQPPISGEEIMETFGLSPSK 433
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
VG I K+ + Q + L+ ++ S
Sbjct: 434 IVGEIKEEIKEAILEGKIQNKPDKARELMYEIAKSK 469
>gi|308063569|gb|ADO05456.1| poly(A) polymerase [Helicobacter pylori Sat464]
Length = 388
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 93/403 (23%), Positives = 151/403 (37%), Gaps = 22/403 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ D +L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FKLDKELQELFDIYEKSSHELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINA 126
+V+ T I +GTI + ++ITT R + F+ D RRDF++NA
Sbjct: 62 RVLETGIKHGTITAFKNNQSYEITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ VID G N + N+ I+ +G+A R ED LRILR RF A G I
Sbjct: 122 IAYSPTKGVIDPFKGQNAIENQIIECVGEARLRFFEDALRILRALRFSATLGF-KIAPST 180
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A K LK LS ER+ SE+NK L KN ++
Sbjct: 181 KEAIFAYKDLLKHLSKERLQSELNKFLMGKNAYEVAK------------------EYQEI 222
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+++ E++ F + + + P++ + C+
Sbjct: 223 LELVTQEKIESLGFLKSAPFNLELRLLGFFKHQKSLENLCYPKKTCVLFLKAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ + +KK L
Sbjct: 283 NIHNKTELKFLLKNYDLEPFNLALDFYALKNPKRALKIKGLLKEIFNANEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +++G IL C I S E L +R
Sbjct: 343 GGTLQNLGYRR-QQIGEILNACLNLVIAHPENNSLERLVEWVR 384
>gi|315605488|ref|ZP_07880525.1| polyA polymerase family protein [Actinomyces sp. oral taxon 180
str. F0310]
gi|315312755|gb|EFU60835.1| polyA polymerase family protein [Actinomyces sp. oral taxon 180
str. F0310]
Length = 533
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 87/453 (19%), Positives = 161/453 (35%), Gaps = 58/453 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++ + ++ ++ +VGG VRD+ + ++ D D+AT+ P+R + S+
Sbjct: 39 PAIMELGTIFRDAGEELALVGGPVRDAFLGVTPHDFDMATSARPERTEELLSRWGNATWD 98
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130
+GTI ++TT R+D G R +V F + D RRDFT+NA+
Sbjct: 99 IGKEFGTIGGRRGDVVVEVTTYRTDEYEIGSRKPEVTFGDTLEGDLTRRDFTVNAMAMRL 158
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
Q ++D GL DL ++ A +D LRI+R RF A G ++D D + A
Sbjct: 159 PQMALVDPCAGLTDLAAGNLRTPVSAEQSFDDDPLRIMRAARFSAQLG-LDVDEDVMNAM 217
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD------------- 237
L+I+S+ERI +E+ +L+ + P I M + G+ + +
Sbjct: 218 ETMASRLEIVSAERIRAELERLIISPYPRRGIELMVHTGVADIVLPEVAALVSTVDEHKR 277
Query: 238 ---VQEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKK--------------- 276
V E +L + Q I+ E + D +LRF L+ K
Sbjct: 278 HKDVYEHTLTVVEQAIDLETGPDGPVPAPDFVLRFAALMHDVGKPATRRFEANGSVSFHH 337
Query: 277 -------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
K + + + + Y+ ++
Sbjct: 338 HEIVGAKMTRKRMKALHFDKATIEAVSTLVALHLRFHGYGEAAWSDSAVRRYVADAGDLL 397
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGI 375
+L + ++ D+ L GD +++ G+
Sbjct: 398 ERLHRLTRADCTTRNRRKAAYLSAAYDDLEQRIAALREQEELDAIRPDLDGDQIMEILGL 457
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
P + V + + + ++ LL
Sbjct: 458 RPSRAVKIARDYLLELRMERGPLGEEDAREALL 490
>gi|53714925|ref|YP_100917.1| tRNA nucleotidyltransferase [Bacteroides fragilis YCH46]
gi|265766778|ref|ZP_06094607.1| tRNA adenylyltransferase [Bacteroides sp. 2_1_16]
gi|52217790|dbj|BAD50383.1| tRNA nucleotidyltransferase [Bacteroides fragilis YCH46]
gi|263253155|gb|EEZ24631.1| tRNA adenylyltransferase [Bacteroides sp. 2_1_16]
gi|301164367|emb|CBW23925.1| putative polyA polymerase [Bacteroides fragilis 638R]
Length = 481
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 75/445 (16%), Positives = 162/445 (36%), Gaps = 55/445 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + + +VGG VRD + +DID+ + K + +
Sbjct: 20 QISETADALGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133
++GT ++ C + R + +V + D RRDFTINAL
Sbjct: 80 KNFGTAQVKCHGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKG 139
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GG+NDL+ + I+ D +D LR++R RF ID D +
Sbjct: 140 RFGELVDPFGGMNDLKEKIIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IDDDTFESL 198
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----------Q 239
+ ++ ++I+S ERI E+NK++ + P + + G+ + IF ++ +
Sbjct: 199 CRNRERIEIISRERIADELNKIMLSPIPSKGFIDLDRSGLLELIFPELVALQGVETRNGR 258
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----AKKFSLPREI-RYF 294
+ + + + + LR+ L+ K F I
Sbjct: 259 AHKDNFYHTLEVLDNISRVTDNLWLRWSALLHDIAKPVTKRWEPKAGWTFHNHNFIGEKM 318
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AKLKIFLALH 336
+ + F + ++K+ L+ ++I + + L
Sbjct: 319 IPNIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMTLC 378
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++ + L++ + P++G+++++ + + P ++VG
Sbjct: 379 EADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQPPVSGEEIMEVFNLGPCRQVG 438
Query: 383 NILVHCKQEWINSSFQLSQEDLHHL 407
++ K ++ E +
Sbjct: 439 SLKSAIKDAILDGVIPNEYEAAYAF 463
>gi|315924857|ref|ZP_07921074.1| poly A polymerase [Pseudoramibacter alactolyticus ATCC 23263]
gi|315621756|gb|EFV01720.1| poly A polymerase [Pseudoramibacter alactolyticus ATCC 23263]
Length = 413
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 99/409 (24%), Positives = 167/409 (40%), Gaps = 14/409 (3%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT--RYK 69
L + + +VGGAVRD+L+ D+D+AT P+ + +FS+ +
Sbjct: 2 RDALERLFDHFERAGYALYLVGGAVRDALLGAVPTDMDLATDARPEAMQALFSRALPGAR 61
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKV-VFTRDWKADSLRRDFTINAL 127
V+ +GT+ + ++F+ITT R+D DGR+ VF + D LRRDFT+N L
Sbjct: 62 VVTAGARFGTVGVQLDGQWFEITTFRADKNYGDGRHPDRVVFGTSVREDVLRRDFTVNGL 121
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D++G V+DYVGGL+DL+ R ++ IGD R ED LR R R G +
Sbjct: 122 LMDRRGVVLDYVGGLSDLKARRLRCIGDPQARFAEDKLRKWRCVRLATIKGFAIEAATWH 181
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ A +S ERI E K L + ++ + G++ ++ + EIS ++
Sbjct: 182 ALAADAD--TAGVSCERIGGEWRKFLIGPHFGRGMMLLAASGLWADLIRRL-EISRARIP 238
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+A + D +R + +K++ + K +LP+ + +
Sbjct: 239 SEGDASALDALPADPAVR--LAFLLTGEKALSEVLKPLALPKAMVRAAERYGERRQISAD 296
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LF 363
I K G L + AL + + I+ +P
Sbjct: 297 ADIVAFKSALADLGRPQFEKLLALQEALAQTAADQRRAAANRACYARIVQTCQPIARSEL 356
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
L+ D+ G G +G+ L + E L +L + I
Sbjct: 357 ALSAADLKAMGFG-GAAIGSSLTLLLHHVYRRPAANTPEALRAVLAEAI 404
>gi|329767023|ref|ZP_08258551.1| hypothetical protein HMPREF0428_00248 [Gemella haemolysans M341]
gi|328837748|gb|EGF87373.1| hypothetical protein HMPREF0428_00248 [Gemella haemolysans M341]
Length = 386
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 105/399 (26%), Positives = 172/399 (43%), Gaps = 31/399 (7%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
INIL N+ ++ VGG VRD L+N DIDI T LP+ V +IF K+ I T
Sbjct: 13 AINILEKFNEAGYEAYFVGGCVRDYLLNDEFSDIDITTNALPEEVKQIFRKS----IDTG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYADQQ 132
I +GT+ I+ + F++TT R++ F D K D RRDFTINA+ D
Sbjct: 69 IQHGTVTILVDEDSFEVTTFRTEDDYIDHRTPEKVEFVSDLKEDLDRRDFTINAMALDSN 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
GK+ DY G DLRN+ IK + + + R ED LR+LR FRF + G I+ + L A
Sbjct: 129 GKLYDYHCGERDLRNKVIKTVNNPNERFFEDALRMLRSFRFSSKLGF-EIEENTLKAIKN 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ +K +S ERI +E KLL + ++ + + + I LD++S++I+
Sbjct: 188 NAELIKFVSIERIVNEFRKLLTGRGNKRSLELLLDSKLNNYIPF------LDEISKIIDF 241
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ I + K+ L + + + N + + E
Sbjct: 242 SN-------YTFCQSLYILSKINDISFEKLKELKLSNKEIKQIKIYEKINEDFSSNIPLE 294
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
I Y D IA + + + + ++ +DI + +
Sbjct: 295 IILYNYDVNDVTFIAS----YSNYCDKEDIEKIKLPIKSFNDIAITSMEIISI------- 343
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
P G + I+ +++ I +++D+ L K+
Sbjct: 344 IDKPAGPWIKEIIKKLEEDIILYKIDNTKKDILDFLMKI 382
>gi|260495614|ref|ZP_05815738.1| tRNA adenylyltransferase [Fusobacterium sp. 3_1_33]
gi|260196797|gb|EEW94320.1| tRNA adenylyltransferase [Fusobacterium sp. 3_1_33]
Length = 442
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 106/432 (24%), Positives = 185/432 (42%), Gaps = 44/432 (10%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I IL+ LNK K IVGGA+RD L+ L +D+D AT + + + +FS+ K T
Sbjct: 14 IKILNKLNKCG-KGYIVGGAIRDILLELKPKDVDFATNLSYETLKTLFSEYTPK--ETGK 70
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
S+G ++I ++I R D+ G+ KV F D K D RRDFTINA+ +Q+ +
Sbjct: 71 SFGVLRIRINNIDYEIAKFREDI--YGKEKKVSFVDDIKNDLARRDFTINAMAYNQKEGI 128
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
ID G D+ NR I FIG+A RI+ED LR+LR FRF + ++ + + A K K
Sbjct: 129 IDLYNGQKDIENRIINFIGNAEERIIEDPLRVLRAFRFMSRLDF-SLSENTIEAIKKQKD 187
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
LK + ERI E +KLL +N N + M + G+ + I + + +
Sbjct: 188 LLKNIPEERITMEFSKLLLGENIKNTLTLMKDTGVLELIIPEFKATYDFNQCNPHHNLDL 247
Query: 256 FEW--------KIDSLLRFIVLISWQ----------------------DKKSILSMAKKF 285
F D LR+ L+ + +
Sbjct: 248 FNHIINVVSKVPADLELRYSALLHDIAKPVVQTFDEEGIAHYKTHEIVGADMARDILTRL 307
Query: 286 SLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344
LP ++ + + K ++ + KL G + ++ +A + +
Sbjct: 308 KLPVKLIDTVEEIIKKHMVLYKDITDKKFNKLLSEMGYDNLWRLIEHSIADNSSKNDEVV 367
Query: 345 T------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398
+ + + + + + G D+++ G GK++G I ++++ Q
Sbjct: 368 STENDLHERLKRAVEKQMQVTVNDLAINGKDLIELGF-NGKEIGEIKKELLDKYLSEEIQ 426
Query: 399 LSQEDLHHLLRK 410
++E++ +++
Sbjct: 427 NNKEEMLEYVKE 438
>gi|145297078|ref|YP_001139899.1| hypothetical protein cgR_2974 [Corynebacterium glutamicum R]
gi|140846998|dbj|BAF55997.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 470
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 83/449 (18%), Positives = 160/449 (35%), Gaps = 56/449 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L+ + + + +VGG+VRD+ + D+D T+ P+ I V T
Sbjct: 15 LVPLAAAFSSKGHSLYLVGGSVRDAFLGELGHDLDFTTSARPEETKAILDDYADVVWDTG 74
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
I++GT+ + +ITT RSD + R +V F + D +RRDF +NA+ A+ Q
Sbjct: 75 IAFGTLSAEKHGQQIEITTFRSDLYDGNSRNPEVTFGDTLEGDLIRRDFKVNAMAAEIQA 134
Query: 134 ----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D VGGL DL T+ +D LR+LR RF + + + A
Sbjct: 135 DGELTFHDPVGGLEDLLTHTLDTPATPEQSFNDDPLRMLRAARFVSQLNF-TLAPRVITA 193
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ + + ++ ER+ E++K++ KNP I M GI + ++ ++ + + Q +
Sbjct: 194 MTEMAQQITRITVERMQVELDKMILGKNPEAGIDLMVESGIAQIVYPEIPAMQMTQDEHM 253
Query: 250 IEAE-------------QVFEWKIDSLLRFIVLISWQDKKS------------------- 277
+ E D +LR+ L+ K
Sbjct: 254 QHKDVYAHSLQVMRQAIDQEEDGPDLVLRWAALLHDCGKPDTRDFNEEGRVSFHQHEVVG 313
Query: 278 ---ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
+ +K +++ + + S + Y ++ +L
Sbjct: 314 AKLVRRRMRKLKYSKQMVGDVGQLVFLHMRFHGFSEGQWTDSAVRRYAADAGELLPRLHK 373
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + + + L G+++++ I G +
Sbjct: 374 LVRADCTTRNKRKAARLQATYDHLEERIAEIAAKEDLARVRPDLDGNEIMEILNIQAGPE 433
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLR 409
VG K+ + L +E L+
Sbjct: 434 VGKAWAFLKELRLERG-PLDREVAIAELK 461
>gi|300780175|ref|ZP_07090031.1| tRNA adenylyltransferase [Corynebacterium genitalium ATCC 33030]
gi|300534285|gb|EFK55344.1| tRNA adenylyltransferase [Corynebacterium genitalium ATCC 33030]
Length = 517
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 80/461 (17%), Positives = 160/461 (34%), Gaps = 62/461 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L +++ + + +VGG VRD+++ D+D T+ PD + I S V T
Sbjct: 58 LTSLVREFHDRGESFYLVGGPVRDAMLGRLGNDLDFTTSARPDIIEAILSGWGEAVWDTG 117
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD--- 130
I +GT+ + + +ITT R+D R +V F D +RRDF +NA+ +
Sbjct: 118 IEFGTVSTVKDGQQVEITTFRADLYDGVTRNPEVTFGDAIDDDLVRRDFRVNAMAIELLV 177
Query: 131 ------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
D V GL DL N + + +D LR+LR RF + G +
Sbjct: 178 AEGEDSLALDFHDPVDGLKDLLNHVLDTPQEPEVSFRDDPLRMLRAARFVSQLGFH-VSE 236
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
A + + ++ ER+ +E++KL+ P I + G+ + ++ + L+
Sbjct: 237 RVKRAMTDMAQEINRITVERVQAELDKLMLGVQPWEGIDLLVETGLADHVLPEIPALKLE 296
Query: 245 QLSQVIEAE-------------QVFEWKIDSLLRFIVLISWQDKKS-------------- 277
+ + + ++ E D LR+ L+ K
Sbjct: 297 RDEHMQHKDVYAHSLTVLRQATELEEEGPDLKLRWAALMHDIGKPDTREAKPGGGVSFHH 356
Query: 278 --------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
+K P+ + + + + Y+ ++
Sbjct: 357 HEVVGAKLTRKRMRKLKYPKHMIEDVGQLVYLHMRFHGFGEGQWTDSAVRRYVTDAGDLL 416
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGI 375
+L + + + + + + L G+++++ G+
Sbjct: 417 PRLHKLVRADCTTRNPKKAARLQRTYDHLEERIADLAAKEDLARVRPDLDGNEIMEILGL 476
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
PG +VG + K + E + L K ++
Sbjct: 477 EPGPQVGKAWKYMKDLRLEHGELGRDEAVAKL--KAWWEAE 515
>gi|60682903|ref|YP_213047.1| putative polyA polymerase [Bacteroides fragilis NCTC 9343]
gi|253566030|ref|ZP_04843484.1| tRNA nucleotidyltransferase [Bacteroides sp. 3_2_5]
gi|60494337|emb|CAH09133.1| putative polyA polymerase [Bacteroides fragilis NCTC 9343]
gi|251945134|gb|EES85572.1| tRNA nucleotidyltransferase [Bacteroides sp. 3_2_5]
Length = 481
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 75/445 (16%), Positives = 162/445 (36%), Gaps = 55/445 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + + +VGG VRD + +DID+ + K + +
Sbjct: 20 QISETADALGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133
++GT ++ C + R + +V + D RRDFTINAL
Sbjct: 80 KNFGTAQVKCHGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKG 139
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GG+NDL+ + I+ D +D LR++R RF ID D +
Sbjct: 140 RFGELVDPFGGMNDLKEKIIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IDDDTFESL 198
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----------Q 239
+ ++ ++I+S ERI E+NK++ + P + + G+ + IF ++ +
Sbjct: 199 CRNRERIEIISRERIADELNKIMLSPIPSKGFIDLDRSGLLELIFPELVALQGVETRNGR 258
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----AKKFSLPREI-RYF 294
+ + + + + LR+ L+ K F I
Sbjct: 259 AHKDNFYHTLEVLDNISRVTDNLWLRWSALLHDIAKPVTKRWEPKAGWTFHNHNFIGEKM 318
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AKLKIFLALH 336
+ + F + ++K+ L+ ++I + + L
Sbjct: 319 IPNIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSAVRRLLFEAGDDIDDLMTLC 378
Query: 337 YNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++T ++ + L++ + P++G+++++ + + P ++VG
Sbjct: 379 EADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQPPVSGEEIMEVFNLGPCRQVG 438
Query: 383 NILVHCKQEWINSSFQLSQEDLHHL 407
++ K ++ E +
Sbjct: 439 SLKSAIKDAILDGVIPNEYEAAYAF 463
>gi|84497211|ref|ZP_00996033.1| putative RNA nucleotidyltransferase [Janibacter sp. HTCC2649]
gi|84382099|gb|EAP97981.1| putative RNA nucleotidyltransferase [Janibacter sp. HTCC2649]
Length = 483
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 85/466 (18%), Positives = 151/466 (32%), Gaps = 66/466 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L + +L + + +VGG VRD+ ++ + D+D T+ P+ I
Sbjct: 13 PLLTELGALFTQAGHELALVGGPVRDAFLDRTPPDLDFTTSASPEETEAILRAWGTATWD 72
Query: 73 TSISYGTIKIICR----KKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+GTI R + +ITT R+D R V F + D +RRDFT+NA+
Sbjct: 73 MGREFGTIGARRRVGGVETTVEITTYRADAYDGVTRKPVVAFGESLEEDLVRRDFTVNAM 132
Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ID GGL DL+ ++ +D LR++R RF A G
Sbjct: 133 ALRLPSLEFIDPYGGLADLQAGWLRTPAAPEVSFGDDPLRMMRAVRFVAQLGLDPAPEVY 192
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A +I+S+ERI E+ KLL A P + + G+ + ++ + L+
Sbjct: 193 AAMQAMAASL-EIVSAERIRDELVKLLLAPRPRAGLELLTVTGLAAHVLPELPALQLEVD 251
Query: 247 SQ----------VIEAEQVFEWK------------IDSLLRFIVLISWQDKKSILSM--- 281
+I EQ + + D +LR L+ K +
Sbjct: 252 EHHRHKDVYDHSLIVLEQAIDLEGPADGPVESVPGPDLVLRLAALLHDIGKPATRRFEPA 311
Query: 282 -------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYL 319
K +E + + Y+
Sbjct: 312 GGVSFHHHEVVGAKLTAKRLKALRFDKETIKAVSRLVELHLRFHGYGDGAWTDSAVRRYI 371
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
++ +L + + + ++ L G++
Sbjct: 372 TDAGPLLPRLHRLTRADCTTRNVRKAQRLSRTYDELERRIGLLLEQESLAAVRPELDGNE 431
Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ + GI PG +G + ++ + E LR A
Sbjct: 432 IAELLGIKPGPVLGRAYKYLLSVRLDEG-PIGPEAAADRLRTWWAE 476
>gi|253583935|ref|ZP_04861133.1| poly(A) polymerase [Fusobacterium varium ATCC 27725]
gi|251834507|gb|EES63070.1| poly(A) polymerase [Fusobacterium varium ATCC 27725]
Length = 448
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 95/436 (21%), Positives = 169/436 (38%), Gaps = 45/436 (10%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
IL + K + IVGG VRDSL+ L +D D T + ++++ IF + K
Sbjct: 14 KYILETIQKYG-EGYIVGGYVRDSLLGLKPKDCDFVTNLSYEKLLEIFKEFHPK--EIGK 70
Query: 76 SYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
++G I+I + +++I R D+ D R +V FT + D RRDFTINA+ D +
Sbjct: 71 AFGIIQIKYKGIHYEIAKYRKDIGVPEDRREQEVEFTDNIMEDLKRRDFTINAVAFDGEN 130
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+ D+ N+ ++F+G A RI ED LR++RF RF N + +
Sbjct: 131 YRY-VEHAVEDIMNKNLRFVGGAPERIKEDPLRVMRFIRFLVTKNLNNKNDIKQILP--Y 187
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
+K LS ER+ E +K++ A + +AI + GI + + + +
Sbjct: 188 IPLVKKLSMERMRDEFSKIITADDAHSAIELLEKTGILEYLIPEWTKTKKFNQRNPHHNL 247
Query: 254 QVFEW--------KIDSLLRFIVLISWQDKKSILS----------------------MAK 283
+ E + D LR L+ K + + +
Sbjct: 248 TLDEHIKKVVASIEGDIELRLAALLHDIGKPQTYTLKNGIGHFYGHEQESAVLAEKILLR 307
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
+ ++ + N N K + KKL G + M K+ A +
Sbjct: 308 MKYANKIVKNVTLLIANHLNNSKNSNKKYCKKLIEKIGYENMPKLFKLMEADRIAHKPPF 367
Query: 344 DTCFILQVL-------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
D + ++ ++ + G+D++ GI GK +G L + + +
Sbjct: 368 DFTALDKLKIAYYEICNNNEPISIKDLVVNGNDMIALGITKGKDIGETLKYLLGKVLEDP 427
Query: 397 FQLSQEDLHHLLRKLI 412
+E L + +
Sbjct: 428 ANNDREILLNFAEQYK 443
>gi|218262165|ref|ZP_03476724.1| hypothetical protein PRABACTJOHN_02398 [Parabacteroides johnsonii
DSM 18315]
gi|218223571|gb|EEC96221.1| hypothetical protein PRABACTJOHN_02398 [Parabacteroides johnsonii
DSM 18315]
Length = 476
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 78/444 (17%), Positives = 158/444 (35%), Gaps = 55/444 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTSI 75
I ++ ++ ++GG VRD ++ +DID+ + + +K + +
Sbjct: 20 ISEAADELGIEAYVIGGYVRDIFLHRPSKDIDVVAVGSGIELAKAVAKKLGRGAYLSVFK 79
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
++GT ++ + R + T +V + D RRDFTINAL
Sbjct: 80 NFGTAQVKAGDLELEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTINALALCLNKDR 139
Query: 136 I----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
D GL D+ N I+ D +D LR++R RF + G ID D A
Sbjct: 140 YGELVDPFDGLTDMDNLLIRTPLDPDITFSDDPLRMMRAVRFASQLGFF-IDPDTFDAIE 198
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------- 241
+ K+ + I+S ERI E+NK++ + P + G+ IF ++ +
Sbjct: 199 RNKERISIISKERIVDELNKIVLSPKPSVGFDLLDRCGLLPLIFPELCALKGVETKEGIG 258
Query: 242 -SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL------------- 287
+ ++ +++ + + LR+ L K +
Sbjct: 259 HKDNFAHTLMVLDRLSKTTDNLWLRWSALFHDIAKPVTKRFDPRLGWTFHNHNFIGEKMI 318
Query: 288 ----------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
E ++ + + LS E+ + + L
Sbjct: 319 PGIFRKMKLPMNEKMKYVQKMVSLHMRPIALSDDEVTDSAIRRLLFDAGDDIDDLMKLCE 378
Query: 338 NNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGIPPGKKVGN 383
++T ++ + + L++ + P+TG+++++ +G+PP + VG
Sbjct: 379 ADITSKNPEKVRRFLNNFQKVRSKLAAIEEKDRVRNFQPPVTGEEIMETFGLPPSQPVGI 438
Query: 384 ILVHCKQEWINSSFQLSQEDLHHL 407
+ K ++ E H
Sbjct: 439 LKEAIKNAILDGVIPNEYEAAHAF 462
>gi|189502253|ref|YP_001957970.1| hypothetical protein Aasi_0872 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497694|gb|ACE06241.1| hypothetical protein Aasi_0872 [Candidatus Amoebophilus asiaticus
5a2]
Length = 474
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 78/452 (17%), Positives = 161/452 (35%), Gaps = 56/452 (12%)
Query: 7 HKWFHD-SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65
W L I ++ ++C+VGG VRD + +DIDI + + ++
Sbjct: 4 SNWLKKYPVLQKIGDTADRLGIETCVVGGFVRDLFLQRPSKDIDIVCVGNGIELAQAVAQ 63
Query: 66 TRYK--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
+ V+ ++GT + + + R + + V D LRRDFT
Sbjct: 64 ELGEDIVVHIFKTFGTAMLRWQDNEVEFVGARKESYSRDSRNPEVTQGTLVDDQLRRDFT 123
Query: 124 INALYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
IN L ++ID +GG++DL+ + IK D +D LR++R RF
Sbjct: 124 INTLAIRINKSQWGELIDDLGGVSDLQQKIIKTPLDPGITFSDDPLRMMRAIRFATQL-R 182
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
ID L++ + + +KI+S ERI E+NK++ A P +++ G+ K F +
Sbjct: 183 FTIDEVTLMSIQQHAERIKIISQERITEELNKIILADIPSKGFKLLFDTGLLKLFFPALV 242
Query: 240 EI-----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + + + + + + LR+ ++ K S + +
Sbjct: 243 NLQGKETIQGYTHKDNFYHTLQVLDNIAKHTNNLWLRWAAILHDIAKPLTKSFSPEIGFS 302
Query: 289 RE-----------------------IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
++ + ++ +
Sbjct: 303 FHGHEDLGAKLVPKIFRQLKLPLSEKMEYVQKLVRLHLRPIAIAQDVVTDSAVRRLIYEA 362
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK 372
L+ + L ++T + + Q L + ++ +TGD +++
Sbjct: 363 GDDLEDLMLLCRADITSNNPTKVKQYLGNFDKVERKVIEVEERDQIRNLQPVITGDIIMQ 422
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQED 403
+ + P + +G I K+ + + E+
Sbjct: 423 TFQLKPSRMIGEIKAAIKEAILEGEIRNEYEE 454
>gi|124003434|ref|ZP_01688283.1| tRNA nucleotidyltransferase [Microscilla marina ATCC 23134]
gi|123991003|gb|EAY30455.1| tRNA nucleotidyltransferase [Microscilla marina ATCC 23134]
Length = 478
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 79/455 (17%), Positives = 164/455 (36%), Gaps = 56/455 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK- 69
++ L + + + ++ +VGG VRD ++ +DIDI + + ++
Sbjct: 9 NNPLLETVAKVAQQTGLETYVVGGFVRDLILKRPSKDIDIVCVGSGIELAKAVAEELPDK 68
Query: 70 -VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ ++GT +I + + R + +V + D RRDFTINAL
Sbjct: 69 PQVNYFKNFGTAQIKAQDWELEFVGARKESYQRNSRKPIVENGTLEDDQNRRDFTINALA 128
Query: 129 A----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ G+VID GG+ L R IK D +D LR++R RF + +I+
Sbjct: 129 ISLQANNYGEVIDPFGGIKHLEQRVIKTPLDPDITFSDDPLRMMRAMRFATQL-KFDIEP 187
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------ 238
+ + K K+ +KI+S ERI E+NK++ A P ++ + IF ++
Sbjct: 188 NTFESIQKNKERIKIVSQERITVELNKIVAASVPSYGFKLLFYAELLHLIFPEMVDLHGV 247
Query: 239 -----QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL------ 287
+ + + + V + D LR+ ++ K K+
Sbjct: 248 DVVEGKAHKDNFFHTLQVLDNVAKVSDDLWLRWSAIMHDIAKPVTKRFDKRAGWTFHGHE 307
Query: 288 -----------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330
+ F+ + L I +
Sbjct: 308 DKGAKMVPHIFRRLKLPMNDRMRFVQKLVRLHLRPIPLFRDHITDSAIRRLLFDAGDDID 367
Query: 331 IFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIP 376
+ L ++T ++ + + L + + +TG+ +++ + +
Sbjct: 368 ALMMLCRADITSKNHEKVKRFLKNFDVVERKLKEIEEKDRMRNFQPVITGEVIMEAFDLK 427
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHL-LRK 410
P ++VG I ++ ++ + E+ ++K
Sbjct: 428 PSREVGLIKTAVREAVLDGEIRNEIEEAFAFMVKK 462
>gi|87311632|ref|ZP_01093749.1| poly A polymerase [Blastopirellula marina DSM 3645]
gi|87285635|gb|EAQ77552.1| poly A polymerase [Blastopirellula marina DSM 3645]
Length = 426
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 93/408 (22%), Positives = 178/408 (43%), Gaps = 21/408 (5%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
+ ++ L ++ GG VRD L+ QD D+AT P+RV +IF + + +
Sbjct: 14 LEVVRTLKTHGHQALWAGGCVRDMLLGRDPQDFDVATDAPPERVRQIFGEK--RTLAIGA 71
Query: 76 SYGTIKIICRKK--YFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
S+G I + KK ++ T R D+ +DGR V + D+ RRDFTIN ++ D
Sbjct: 72 SFGVITVQGGKKRGQIEVATFRQDVGYSDGRRPDEVRFTSAEEDAKRRDFTINGIFYDPD 131
Query: 133 GK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ D+VGG DLR+R ++ IGD + R ED LR+LR RF + + +++ + + A
Sbjct: 132 ASAIYDFVGGQIDLRDRLVRAIGDPNQRFAEDKLRMLRAIRFSS-TFQFDLEMNTMRAIQ 190
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------QEISLDQ 245
+ + + ++S+ER+ E+ K+L + + A+V + + +F + +V +
Sbjct: 191 RHSRNIAVVSAERVAVEMRKMLCSPRRVEAVVLLRDSWLFPTVLPEVITVIDHAPRWTET 250
Query: 246 LSQVIEAE-QVFEWKIDSLLRFI------VLISWQDKKSILSMAKKFSLPREIRYFLISF 298
L + F + +LLRF + ++ + +++ L + +
Sbjct: 251 LRTLQFLSGNDFATALAALLRFSTARELASGDPRKPIPLLVEVCRRWKLTNDETRDVQWL 310
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD-TCFILQVLSDIIH 357
+T +L + D + + A+ + + F+ + L +
Sbjct: 311 LRQVHVLQTAKDQSWPRLQRVLVDPRIEKLADLASAIAKARMESLEHLDFVRERLGWAVE 370
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
P TGDD+++ G+ PG+ +L + + E L
Sbjct: 371 RLNPSPVATGDDLIRAGLKPGRHFQGLLESIRDAQLLGEIATLDEALE 418
>gi|304390464|ref|ZP_07372417.1| tRNA adenylyltransferase [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|304326220|gb|EFL93465.1| tRNA adenylyltransferase [Mobiluncus curtisii subsp. curtisii ATCC
35241]
Length = 509
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 87/439 (19%), Positives = 155/439 (35%), Gaps = 58/439 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ + + +VGG VRD+L+ ++ D+D+ T+ PD + V
Sbjct: 43 VVPLGEAFAAAGYEIALVGGPVRDALLGITPHDLDLTTSARPDETEAVLRSWADAVWDVG 102
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132
+YGT+ F+ITT RSD R V F + D RRDFT+N++
Sbjct: 103 RNYGTLGARKGDDVFEITTYRSDDYQRDSRKPTVKFGDTLEGDLFRRDFTVNSIALRLPT 162
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+++D GGLNDL ++ D +D LRI+R RF A E ++D + + A
Sbjct: 163 LELVDPTGGLNDLAAGILRTPIDPEESFSDDPLRIMRAARFAAQL-EFDVDYETMQAMET 221
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------------- 238
++ L I+S ER+ +E+++L+ A P + M + +++ ++
Sbjct: 222 MRERLTIVSPERVQAELSRLMTAPAPRRGLELMVYTRLAEQVLPELMDLLDMQDEHKRHK 281
Query: 239 --QEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM------------ 281
E SL L Q I E + D +LR ++ K +
Sbjct: 282 DVWEHSLTVLDQAIAQETGPDGPVPAPDLVLRLAAILHDIGKPATRRFEAGGVVTFHQHD 341
Query: 282 ----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAK 328
K + + + Y+ ++ +
Sbjct: 342 VVGARITRARLKALKYDKATIRDVSRLVALHQRFHGYGEQVWTDSAVRRYVTDAGPLLER 401
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKK----------PLFPLTGDDVVK-YGIPP 377
L + + D+ K L GD++++ GIP
Sbjct: 402 LHRLTRADCTTRNVKKAQRLAAAYDDLEARIKELKAQEELDAVRPELNGDEIMEILGIPA 461
Query: 378 GKKVGNILVHCKQEWINSS 396
G +VG +
Sbjct: 462 GPEVGKAYKFMLAYRMEHG 480
>gi|269217865|ref|ZP_06161719.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269212800|gb|EEZ79140.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 520
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 93/468 (19%), Positives = 167/468 (35%), Gaps = 72/468 (15%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + S+ + +VGG VRD+ + L + D D+ T+ P+ R+ S
Sbjct: 35 PAIDELGSIFADAGHEVSLVGGPVRDAFLGLPIHDFDLTTSAPPEITERLLSSWGAATWD 94
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130
+GTI + ++TT RSD G R KV F R + D RRDFT+NA+
Sbjct: 95 VGREFGTIGSVRDGVTAEVTTYRSDSYEVGSRKPKVDFGRTLEGDLSRRDFTVNAMAVRL 154
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +++D GGL+DL ++ A +D LRI+R RF A G ++ D + A
Sbjct: 155 PELELVDPCGGLDDLVGGVLRTPVTAVQSFDDDPLRIMRAARFAAQLGF-DVGEDVVSAM 213
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------ 238
+ + L I+S+ERI +E+ +L+ + P I + G+ + ++
Sbjct: 214 AEMAERLAIVSAERIRAELERLMLSPAPRRGIELLVYTGVADVVLPEIAQLRETVDEHKR 273
Query: 239 ----QEISLDQLSQVIEAEQVFEWK-------------IDSLLRFIVLISWQDKKSILSM 281
E +L + Q I E + D LR L K
Sbjct: 274 HKDVYEHTLTVVDQAIALEDPASKEEYEAYLLGGELEGPDLTLRLAALFHDVGKPRTRRF 333
Query: 282 ----------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
++ + + S
Sbjct: 334 EKDGSVTFRAHDVVGARMAAKRMAALRFDKQTEKDVARLVELHLRAFGFSEAGWTDSAVR 393
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCF-------------ILQVLSDIIHWKKPLFPLT 366
+ L + L ++T Q+ ++ L++ L
Sbjct: 394 RFVRDAGDLLPRLMRLIRADVTSQNRRKVGRLQAGNDELAARIRDLAEQEALDAIRPDLD 453
Query: 367 GDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
G +++ G+ PG +VG + + ++ L +E+ R+L+A
Sbjct: 454 GARIMEILGLKPGPEVGAARNYLLELRLDEG-PLGEEEAE---RRLLA 497
>gi|148264296|ref|YP_001231002.1| CBS domain-containing protein [Geobacter uraniireducens Rf4]
gi|146397796|gb|ABQ26429.1| CBS domain containing protein [Geobacter uraniireducens Rf4]
Length = 875
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 64/424 (15%), Positives = 133/424 (31%), Gaps = 29/424 (6%)
Query: 12 DSDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
++ +L L + D+ VGG VRD L+N DID+ FS
Sbjct: 456 SPTVLQVLRDLGRVGDRLDLPVYAVGGFVRDLLLNNENYDIDVTVEGDGILFAETFSAEF 515
Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + +GT I+ D+ + R + V K D RRDFTIN
Sbjct: 516 GCRVKSHEKFGTAVIVFPDGFKVDVASTRLEYYVSPGALPTVERSSLKMDLYRRDFTINT 575
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDS 184
L + + + +ED R+ R RF
Sbjct: 576 LAIRLNNSEFGLLIDYFGAHRDLQDRLIRVLHNLSFVEDPTRVFRAIRFEQRLDFHIAKH 635
Query: 185 DGLVASIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ---- 239
+ L+ L +R+ +E+ +L K P A+ + G+ + I ++Q
Sbjct: 636 TENLIKNAVKMDFLEKLGGKRLLTELVYILREKEPFKAVERLSALGLLRFIHPELQMTAR 695
Query: 240 -------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
+ ++ ++ +E + L ++ + +E
Sbjct: 696 TRTVLEDARKIISWFDLLFLDRAYERWVVYFLTLCESLTDDMLWGACTRLAVNEHYKEKL 755
Query: 293 YFLISFFNCNFNQKTLSIPEIKK----LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
+ + + + + Y + + + L +A ++ +
Sbjct: 756 FEMRRRGEEVLEIMEMKVARGGRVAKSEIYFWLKDLPVEILLYLMAKTGSDDAKKCISL- 814
Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ ++G+D+ + G+P G +L + +N ++L +
Sbjct: 815 -----YFTQLQGVRCLISGEDLKRLGVPAGPLYRELLDVVLKARLNGQVVSRDDELGMVR 869
Query: 409 RKLI 412
+L
Sbjct: 870 ERLK 873
>gi|320528618|ref|ZP_08029771.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Solobacterium moorei F0204]
gi|320130984|gb|EFW23561.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Solobacterium moorei F0204]
Length = 393
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 99/400 (24%), Positives = 185/400 (46%), Gaps = 19/400 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ ++ LLN+ + +VGGA+R++L+ L + D D+ T PD ++++FS +V+ T
Sbjct: 9 IQVLIDLLNQNHYSAYVVGGAIRNALLELPIHDYDLTTDATPDEMLQVFSSH--RVLKTG 66
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYADQQ 132
I +GTI ++ + + +ITT RS+ + + F+ + K D RRDFTINAL +
Sbjct: 67 IQHGTITVLSKGQPVEITTFRSENVYEDHRHPSGVLFSDNIKEDCKRRDFTINALCYNNN 126
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D+ GG+NDL N+ I+ IG+A+ RI ED LRILR RF I+ + A K
Sbjct: 127 EGLLDFFGGVNDLSNKIIRCIGNANERIDEDALRILRALRFAGRLSF-TIEENTATAIHK 185
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
K L +S ERI SE +LE + + + DV ++ + +L + I
Sbjct: 186 QKDLLHYISEERIHSEWIGILETNALSSIL----------TEYSDVIQVFIPELKENIIQ 235
Query: 253 EQVFEWKIDSLLRF-IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E + L + I ++ ++ + ++ + ++S + + LS
Sbjct: 236 ESISSINQSPLSANIRMAILLKEIPNVKEILERLKYSGAEQTVILSCIQNSM--QPLSSK 293
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
K F + A+ + + ++ + ++ + G+ V
Sbjct: 294 IELKRFLSTLKIPFDTYHQYRSAIDSSYQKETIHAYYQEIHNMHEPYQLKELAIDGNTVK 353
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
++G GK + +IL C I + E L ++++++
Sbjct: 354 EFGYQ-GKDIADILQRCLNAVIEKPENNTVEYLTNMIKRI 392
>gi|317153261|ref|YP_004121309.1| polynucleotide adenylyltransferase region [Desulfovibrio
aespoeensis Aspo-2]
gi|316943512|gb|ADU62563.1| Polynucleotide adenylyltransferase region [Desulfovibrio
aespoeensis Aspo-2]
Length = 901
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 70/409 (17%), Positives = 132/409 (32%), Gaps = 12/409 (2%)
Query: 14 DLINILSLL-NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
D + + L + VGG VRD L+ D+D+ R ++ +
Sbjct: 480 DFLKVAGELGQDMGWEVYAVGGFVRDILLARPNFDLDLVVEGDAIAYARRLARQLGGRVK 539
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ + T +I + D+ T R + V K D RRDFTINAL
Sbjct: 540 AHVKFKTAVVILDDQRVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTINALALRIN 599
Query: 133 GKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +ED RILR RF + + +
Sbjct: 600 PGRFGQLVDFFGAEQDMKNKAIRVLHSLSFVEDPTRILRAIRFERRFEFQIGGQTLRLIK 659
Query: 191 IK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-----LD 244
+ LS RI E+ ++ +NPL + M GI + I ++ + L
Sbjct: 660 NALSLDLFSKLSGTRIMHELQLIMAEENPLACLNRMQELGIMEAIHPLLKLSADRVQVLM 719
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF--FNCN 302
+L +V ++ + + + L+ + + S R F
Sbjct: 720 ELGKVNNWYKLLYLEPRVVPWKLYLLGLTMGIKRDQIGQVTSRLRFTTKEEREFLQLRDM 779
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + ++ I + + + + + + +
Sbjct: 780 IGDALMRLMSWREDKSRLSRLSAILRPIPLEGVLFLMARSRKEHIRRGISQYLTRLRDVT 839
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
++G D+ + G+ PG ILV + I+ Q ++ L L ++L
Sbjct: 840 IDVSGTDLQEMGLAPGPAYSAILVRVLEAKIDGRAQTREDQL-RLAKRL 887
>gi|308061970|gb|ADO03858.1| poly(A) polymerase [Helicobacter pylori Cuz20]
Length = 388
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 91/402 (22%), Positives = 151/402 (37%), Gaps = 22/402 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ D +L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELDKELQELFDIYEKSSHELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--ADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + + D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ VID G N + N+ I+ +G+A R ED LRILR RF A G I
Sbjct: 122 IAYSPTKGVIDPFKGQNAIENQMIECVGEARLRFFEDALRILRALRFSATLGF-KIAPST 180
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A K LK LS ER+ SE+NK L KN ++
Sbjct: 181 KEAIFACKDLLKHLSKERLQSELNKFLMGKNAYEVAK------------------EYQEI 222
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+++ E++ + F + + + P++ + C+
Sbjct: 223 LELVTQEKIENLGFLKKVPFNLELRLLGFFKHQKSLENLRYPKKTCVLFLKAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ + +KK L
Sbjct: 283 NIHNKTELKFLLKNYDLEPFNLALEFYALKNPKRALKIKSLLKEIFNANEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G + G +++G IL C I S E L +
Sbjct: 343 GGTLQNLGYQR-QQIGEILNACLNLVIAHPKNNSLERLVEWV 383
>gi|269797051|ref|YP_003316506.1| tRNA adenylyltransferase [Sanguibacter keddieii DSM 10542]
gi|269099236|gb|ACZ23672.1| tRNA adenylyltransferase [Sanguibacter keddieii DSM 10542]
Length = 488
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 83/461 (18%), Positives = 153/461 (33%), Gaps = 64/461 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +++ + + +VGG VRD+ + S D+D AT+ PD +R+ +
Sbjct: 20 APEAVDLGEVFAAAGHELALVGGPVRDAFLGRSSADLDFATSARPDETLRLLAAWGDAHW 79
Query: 72 PTSISYGTIKII------CRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTI 124
+GTI + ++TT R+D R VVF D RRDFT+
Sbjct: 80 DIGKEFGTIGAKRFARGGAPEVVVEVTTYRTDEYDPASRKPLVVFGDTLDGDLSRRDFTV 139
Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
NA+ +D GL DL ++ +A +D LR++R RF A G ++D
Sbjct: 140 NAMAVRLPDLTFVDPHDGLTDLAREVLRTPIEAARSFDDDPLRMMRAARFAAQLGF-DVD 198
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----- 238
+ A + I+S+ER+ E++KLL +++P + + G+ + ++
Sbjct: 199 PEADRAVRDMADRISIVSAERVRDELSKLLVSQHPRKGLHVLVETGLADHVLPELVGMKQ 258
Query: 239 -----------QEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM--- 281
E SL L Q I+ E + D +LR L+ K +
Sbjct: 259 AVDEHNRHKDVYEHSLTVLDQAIDLETDADGAVPGPDFVLRLAALLHDIGKPATRRFESN 318
Query: 282 -------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYL 319
+ +E + + Y+
Sbjct: 319 GTVSFHHHEIVGAKLTAKRLRALRFDKETVSQVSRLVELHLRFHGYGDGAWTDSAVRRYV 378
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDD 369
++ +L + + D+ L G
Sbjct: 379 TDAGPLLERLHRLTRADCTTRNKRKAQRLSDAYDDLESRIEVLRGEEELASIRPDLDGQQ 438
Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
++ + PG +VG + ++ L+R
Sbjct: 439 IMDALSLTPGPEVGQAYRFLMELRLDRGPLGPDAARDELVR 479
>gi|237786638|ref|YP_002907343.1| tRNA nucleotidyltransferase [Corynebacterium kroppenstedtii DSM
44385]
gi|237759550|gb|ACR18800.1| tRNA nucleotidyltransferase [Corynebacterium kroppenstedtii DSM
44385]
Length = 511
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 82/447 (18%), Positives = 156/447 (34%), Gaps = 55/447 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76
+ N + +VGG+VRD+L+ D+D T P + R+ T V T I
Sbjct: 53 PLAQAFNDDDCDLYLVGGSVRDALLGRLSSDLDFTTNARPHDIHRLLESTCDAVWDTGID 112
Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ---- 131
YGT+ + ++TT R+D + R +V F D RRDFT+NA+ +
Sbjct: 113 YGTVSGQRSGQDIEVTTFRADTYDGESRNPEVTFGDSLDKDLTRRDFTVNAMAVEVRGDG 172
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
D + GL DL + D +D LR+LR RF + G + A
Sbjct: 173 SQVFHDPLHGLTDLVRGYLDTPDDPAISFHDDPLRMLRACRFVSQLG-LRVAPRVREAME 231
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------ 245
+ ++ +++ERI +E++KL+ +P + I M + G+ I ++ + + +
Sbjct: 232 RMAGDIQRITAERIHAELDKLILGDHPTDGIELMVDTGLADYIIPEIPAMRMTRDEHMQH 291
Query: 246 -------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKK---------------------- 276
L + +A D +LR+ L+ K
Sbjct: 292 KDVYAHSLQVLRQAIDREPDGPDLVLRWAALLHDCGKPSTRAPKPGGGVTFYHHDVVGAK 351
Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIFL 333
+ ++ + + + Y+ ++ +L +
Sbjct: 352 MARKRFRALKYSKQFIKDVSGLIYLHQRFHGYTEKAWNDSAVRRYVTDAGPLLPRLHRLV 411
Query: 334 ALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKKVG 382
+ ++ D+ + L G+D++ I PG VG
Sbjct: 412 RADCTTRNQAKARRLQRLYDDLERRIEEIQHKEDLARIRPDLDGNDIMTILDIEPGPMVG 471
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLR 409
H K ++ ++ + L +
Sbjct: 472 KAWKHMKDVRLDQGPLEREDAILELKK 498
>gi|51243913|ref|YP_063797.1| poly(A) polymerase [Desulfotalea psychrophila LSv54]
gi|50874950|emb|CAG34790.1| related to poly(A) polymerase [Desulfotalea psychrophila LSv54]
Length = 882
Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats.
Identities = 79/411 (19%), Positives = 143/411 (34%), Gaps = 20/411 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L + L ++ K+ VGG VRD L+ + D+DI + ++
Sbjct: 468 LQEVGELADEIGFKAFAVGGFVRDLLLKTANLDLDIVVEGNGIAFAKKVAEHFKGKFFPH 527
Query: 75 ISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ T + DI T R + ++ K D RRDF+INA+
Sbjct: 528 EKFLTATVTLPNDFKIDIATARLEYYESPAAMPMIQLSSIKLDLSRRDFSINAMALQINR 587
Query: 134 K----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLV 188
+ +IDY +DLRN+ I+ + + +ED RI R RF + GL+
Sbjct: 588 EQFGTLIDYFNSQSDLRNQVIRVLH--NLSFVEDPSRIFRAIRFEKRMNFHIGPHTKGLI 645
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-------- 240
+ A R SE+ + + K+PL +V + G+F+ ++ D++
Sbjct: 646 GNAVAMNLFGKSRDSRFLSELKIIFKEKDPLGPLVRLAEFGLFQYLWPDLRPNYRTDRRF 705
Query: 241 -ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ Q I+ E K L++ + + + E
Sbjct: 706 CHGIRQTKAAIKKLYEIEPKAKIDKSVAFLLTIFHRSGPEEIQAFCNRFNEEEKICKKLL 765
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
L + + + + L Y + + VL + +
Sbjct: 766 QTKQRCDALLPILYTPMAKSELHQHLQDLN--YEDLLYICSVAKKSHIHKSVLDYLCQLR 823
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
L G D+++ G P G K IL K+ ++ ++ LL+K
Sbjct: 824 HIKPLLKGKDLMEMGYPRGPKFSEILNSLKRAKMDGLVSSRADE-EELLQK 873
>gi|262037488|ref|ZP_06010947.1| tRNA adenylyltransferase [Leptotrichia goodfellowii F0264]
gi|261748418|gb|EEY35798.1| tRNA adenylyltransferase [Leptotrichia goodfellowii F0264]
Length = 586
Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats.
Identities = 108/456 (23%), Positives = 185/456 (40%), Gaps = 54/456 (11%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ +SD+ IL LN +VGGAVRD + D D AT I +++ IF
Sbjct: 3 FKLNSDVKFILEQLNNNG-TGFLVGGAVRDLITGKEPYDYDFATDIEYEKLKEIFKNFSP 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRD-WKADSLRRDFTINA 126
K +G + I K+++I R + + R+ K V D + D RRDFT+NA
Sbjct: 62 K--EVGAHFGILIIKVNGKHYEIAKFRKETGVLNSRHPKSVKFIDTIEEDLSRRDFTVNA 119
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++ +ID GG D+ NR I+F+G RI ED LRI+R FRF + G K
Sbjct: 120 MAYNEIRGLIDLFGGKKDIENRIIRFVGKPKIRIEEDALRIMRAFRFISQLGFKLDKKTS 179
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+K K +S ERI++E++++L A+ M G+ + I +
Sbjct: 180 EAIYLKKKFLN-KISKERIFTELSRILTGPCMKRALRMMKKCGVLEMIIPEFDYAYDFDQ 238
Query: 247 SQVIEAEQVFEW--------KIDSLLRFIVLISWQDKKS--------------------- 277
+ + + +FE D + RF L K S
Sbjct: 239 NNSYKKDLLFEHIIKVTDLCHPDLITRFAALFHDLGKISTKSIDAKGKFHYYGHEKESVL 298
Query: 278 -ILSMAKKFSLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLA- 334
+ K+ +P + + + + + +S EIKKL G+K + +F A
Sbjct: 299 IAENCLKELRVPNDFLHSVKKIVLNHMIVYQEISDREIKKLIINLGEKDLARLFDLFNAD 358
Query: 335 -LHYNNLTHQDTCFILQVLSDIIHWK----KP---LFPLTGDDVVKYGIPPGKKVGNILV 386
L N+ ++ + ++ I K P +TG D++ G P +G I
Sbjct: 359 FLCKNSNEYKKENPVGKLKKRIEEIKSRGYIPSLRELDITGADLISLGFEP-INIGEIKN 417
Query: 387 HCKQEWINSSFQLSQEDLHHLL-------RKLIASS 415
++ ++ + + +E++ L +K+
Sbjct: 418 DIYEQVLDETVKNEKEEILKYLSGKYNISKKMKHEK 453
>gi|34540583|ref|NP_905062.1| polyA polymerase family protein [Porphyromonas gingivalis W83]
gi|188994688|ref|YP_001928940.1| tRNA nucleotidyltransferase [Porphyromonas gingivalis ATCC 33277]
gi|34396896|gb|AAQ65961.1| polyA polymerase family protein [Porphyromonas gingivalis W83]
gi|188594368|dbj|BAG33343.1| tRNA nucleotidyltransferase [Porphyromonas gingivalis ATCC 33277]
Length = 483
Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats.
Identities = 67/440 (15%), Positives = 147/440 (33%), Gaps = 54/440 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTSI 75
I + ++ ++ +VGG VRD +N +DIDI + + +K + +
Sbjct: 19 IAEVADQLGLETYVVGGYVRDIFLNRPSKDIDIVAVGRGIDLAKAVAKKLGRKAHLSVFA 78
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
++GT ++ + R + +V + D RRDFTINAL
Sbjct: 79 NFGTAQVKHGDLEIEFVGARKESYRHDSRKPIVEDGTLEDDLRRRDFTINALAVCLNSDR 138
Query: 136 I----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
D GL D+ + + D +D LR++R RF + I A
Sbjct: 139 FGDLVDMFDGLCDMDDMLLCTPLDPDITFSDDPLRMMRAIRFASQLPGFTILPRDFEAIQ 198
Query: 192 KAKKGLK-ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ----- 245
+ +K +S+ER+ E+NK++ + P + G+ + +F ++ + +
Sbjct: 199 RNAHRIKEAVSAERVIEELNKIMLSPRPSIGLSLFEETGLMEYVFPELLALKGAETRDGI 258
Query: 246 ------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY------ 293
+ + LR+ L+ K +
Sbjct: 259 GHKDNLTHTYKVVDNLARHSDSLWLRWAALLHDIGKPRTKKFVGGQWTFHNHNFVGAKML 318
Query: 294 ----------------FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
++ + + L + + + L
Sbjct: 319 PSLFKRLRLPLDAKLKYVQKLVDLHMRPAALVDEGVTDSAVRRLLFEAGDDIDDLMMLCE 378
Query: 338 NNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVGN 383
++T ++ + + + + H + P++G+++++ +G+ P + VG
Sbjct: 379 ADITSKNPDKVRKYIDNYALVRHKFKEIEEKDHVRNFQPPISGEEIMQTFGLKPSRHVGT 438
Query: 384 ILVHCKQEWINSSFQLSQED 403
I K+ ++ + E
Sbjct: 439 IKEAIKEAILDGAIPNDYEA 458
>gi|295837774|ref|ZP_06824707.1| tRNA adenylyltransferase [Streptomyces sp. SPB74]
gi|295826667|gb|EDY45863.2| tRNA adenylyltransferase [Streptomyces sp. SPB74]
Length = 489
Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats.
Identities = 83/466 (17%), Positives = 170/466 (36%), Gaps = 66/466 (14%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ ++ +VGG+VRD+L+ D+D T P+ V+ + V
Sbjct: 27 SPVADELARRFHEAGFTLALVGGSVRDALLGRLGNDLDFTTDARPEDVLALVRPWADAVW 86
Query: 72 PTSISYGTIK----IICRKK----YFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDF 122
I++GT+ ++ ++TT RS+ R KV + + D +RRDF
Sbjct: 87 EVGIAFGTVGCQKAARVGEEEQSFQIEVTTYRSEAYDRTSRKPKVSYGDSIEEDLVRRDF 146
Query: 123 TINALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T+NA+ + + +D GGL+DL + ++ G +D LR+LR RF A
Sbjct: 147 TVNAMAVFLPEKRFVDPHGGLDDLAAKVLRTPGTPEASFSDDPLRMLRAARFAAQLDF-E 205
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ +D + A + + I+S+ER+ +E+NKLL + +P+ + + + G+ +++ ++ +
Sbjct: 206 VAADVVAAMTAMAERIGIVSAERVQAELNKLLLSAHPVKGLRLLVDTGLAEQVLPELPAL 265
Query: 242 SLD-------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------- 281
L+ L+ + +A + E D LR L+ K
Sbjct: 266 RLESDEHHRHKDVYEHSLTVLEQAIDLEEDGPDLTLRIAALLHDIGKPKTRRFEGDGRVS 325
Query: 282 ---------------AKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYLYG 321
E+ + + + +++ G
Sbjct: 326 FHHHEIVGAKIAKKRLAALKYSNEMIRDVCRLIELHLRFHGYGAGEWTDSAVRRYVRDAG 385
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVV 371
+ +++L + + + + L G++++
Sbjct: 386 PQ--LSRLHKLTRSDCTTRNKRKANALARAYDGLEQRIEELQEQEELDAIRPDLDGNEIM 443
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
GI PG +G + L ++ LR+ S+Q
Sbjct: 444 ALLGITPGPAIGRAYAFLLDLRMEKG-PLGKDAAGEALREW-WSTQ 487
>gi|258647149|ref|ZP_05734618.1| polyA polymerase family protein [Prevotella tannerae ATCC 51259]
gi|260853114|gb|EEX72983.1| polyA polymerase family protein [Prevotella tannerae ATCC 51259]
Length = 479
Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats.
Identities = 78/454 (17%), Positives = 155/454 (34%), Gaps = 59/454 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ + ++ + + +VGG VRD + DIDI + +K +
Sbjct: 15 REPLFRELAQTADRLQLECYVVGGYVRDLFLERPTNDIDIVVVGSGIAMAEALTKRLGRA 74
Query: 71 --IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ ++GT ++ + + R + + +V + D +RRDFTINAL
Sbjct: 75 AHLSVFKNFGTAQVKYHHQEIEFVGARRESYSHDSRKPIVEDGTLEDDQMRRDFTINALA 134
Query: 129 ADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+++D GL DL + ++ D +D LR++R RF ID
Sbjct: 135 VCLNTARYGELVDPFDGLWDLEDGLLRTPTDPDITFSDDPLRMMRCVRFATQLNF-RIDD 193
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A + + L I+S ERI E+NK++ A P V + G+ I ++ +
Sbjct: 194 ETFAALERNAERLSIISGERIIEELNKIMRAPLPSIGFVELQRSGLLPIILPELSALDNV 253
Query: 245 QLSQVIEAEQVFEWKI-----------DSLLRFIVLISWQDKKSILSM----AKKFSLPR 289
+ + F + + LR+ L+ K F
Sbjct: 254 ETRNGKSHKNNFYHTLEVLDNVARRTDNVWLRWAALLHDIGKAKTKRWEPAVGWTFHNHN 313
Query: 290 EI------------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
+ + + ++ +++L + GD
Sbjct: 314 FVGEKMTPALFRRLKLPLDERMKYVKKMVGLHMRPIVIADDIVTDSAVRRLLFDAGDD-- 371
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQ----------VLSDIIHWKKPLFPLTGDDVVKYG- 374
I L + + Q L + + + P+TGD++++
Sbjct: 372 IDDLMLLCEADVTSKNAQRKRNFLNNFKLVREKLVAIEEKDRIRNFQPPVTGDEIMRRFS 431
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+PP ++VG + K ++ S E+ +
Sbjct: 432 LPPCREVGLLKAALKDAILDGKVPNSYEEALAFV 465
>gi|229918726|ref|YP_002887372.1| polynucleotide adenylyltransferase region [Exiguobacterium sp.
AT1b]
gi|229470155|gb|ACQ71927.1| Polynucleotide adenylyltransferase region [Exiguobacterium sp.
AT1b]
Length = 379
Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats.
Identities = 79/400 (19%), Positives = 148/400 (37%), Gaps = 35/400 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I+ + + ++ IVGGAVRD ++ DID+AT++ P+ VM +F K+ +PT
Sbjct: 7 AKQIIDTIEQHGGEAYIVGGAVRDYVLGSLPDDIDLATSLFPEEVMALFPKS----VPTG 62
Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ +I F++TT R R V + D LRRDFT+NA+
Sbjct: 63 IEHGTVTVILDHHPFEVTTFRSEGSYSDSRRPDHVALGVSLEEDLLRRDFTMNAMAF-HD 121
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+V+D GG +DL R I+ +G R ED LRI+R RF + D AS
Sbjct: 122 GRVVDLFGGQHDLEERIIRTVGSPFERFGEDALRIMRALRFMSQLDFTLHDELREAASGL 181
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
K +I + G +K+ ++ E+ + + +
Sbjct: 182 GHKLEQIAMERIAIE--------------FEKLLTGPAYKKALGEMVELGIHRHLPNVTT 227
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E + + D+ L A+ + +
Sbjct: 228 ELMQRVQEDTRTPVNA---VSGWALFLYHAQDDGWLSPWKRSNAIKREARTLAQLCDTGL 284
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ Y ++ + ++ + + ++ + + G D +
Sbjct: 285 DRMTIYATDEQTLSTYFRM----------NGERDRSRELKQSLPMTSRKELKFNGRDALA 334
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
G G+ + ++L ++ I + + L ++ +
Sbjct: 335 LG-ARGEAIKHLLADLERRVILNELPNHETVLKEEAKRWL 373
>gi|51892192|ref|YP_074883.1| putative RNA nucleotidyltransferase [Symbiobacterium thermophilum
IAM 14863]
gi|51855881|dbj|BAD40039.1| putative RNA nucleotidyltransferase [Symbiobacterium thermophilum
IAM 14863]
Length = 457
Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats.
Identities = 86/440 (19%), Positives = 170/440 (38%), Gaps = 61/440 (13%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
IL+ L ++ +VGGAVRD L+ L QD D+AT+ P + +F + + + +
Sbjct: 30 RTILARLTGAGHEAVVVGGAVRDLLLGLVPQDWDLATSARPAELQALFPE--GRAVGAAR 87
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
GT+ I ++IT R+ + D RRDFTI+A+ A +G++
Sbjct: 88 ETGTLLIPGDGTTYEITPYRAG--------------RLEGDLARRDFTIDAMAATPEGRL 133
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
ID +GG DL ++ G R+ ED LR+LR R A + + + + A +
Sbjct: 134 IDPLGGRRDLAAGVVRACGRPEDRLAEDPLRMLRAVRLAAQFDLELDPALARAIAALAPR 193
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
++ ERI +E +LL P + + G+ + ++ E+ + ++ A V
Sbjct: 194 LQA-VAPERIGAEFGRLLVTDRPAWGMQRLRELGLLHQFAPELLEMVGVEQNR-YHAFPV 251
Query: 256 FEWKIDSLL------------------------------RFIVLISWQDKKSILSMAKKF 285
+E + +L R + + ++
Sbjct: 252 WEHSLMALALVPPALHLRLAALLHDVAKPRCLSVDADGERHFYGHEAVGAELADRLLRRL 311
Query: 286 SLPREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
R + + + ++ ++++ G + + +++ A +
Sbjct: 312 RFDNATREKAVHLVRRHMDLHLDGPVTDAALRRMVRRIGVEHLDDLVQLRRADRLASGKR 371
Query: 343 Q---------DTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEW 392
+ I +VL++ K + G DV+ +G PG VG +L +E
Sbjct: 372 EGDLGPDTMAILDGIRRVLAEDAALKVTDLAVDGHDVMAAFGRGPGPYVGQVLEALLEEV 431
Query: 393 INSSFQLSQEDLHHLLRKLI 412
++ +E L L+++
Sbjct: 432 LDRPELNRREALLRRLQEMA 451
>gi|318058987|ref|ZP_07977710.1| RNA nucleotidyltransferase [Streptomyces sp. SA3_actG]
gi|318078637|ref|ZP_07985969.1| RNA nucleotidyltransferase [Streptomyces sp. SA3_actF]
gi|333025736|ref|ZP_08453800.1| putative RNA nucleotidyltransferase [Streptomyces sp. Tu6071]
gi|332745588|gb|EGJ76029.1| putative RNA nucleotidyltransferase [Streptomyces sp. Tu6071]
Length = 475
Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats.
Identities = 80/464 (17%), Positives = 161/464 (34%), Gaps = 61/464 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +VGG+VRD+L+ D+D T P+ V+ + V
Sbjct: 13 SPVADELARRFEEAGFTLALVGGSVRDALLGRLGNDLDFTTDARPEDVLALVRPWADAVW 72
Query: 72 PTSISYGTIK----IICRKK----YFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDF 122
I++GT+ ++ ++TT RS+ R +V + + D +RRDF
Sbjct: 73 EVGIAFGTVGCQKAARVGEEEQSFQIEVTTYRSEAYDRSSRKPQVSYGDSIEEDLVRRDF 132
Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T+NA+ + + +D GGL+DL + ++ G +D LR+LR RF A
Sbjct: 133 TVNAMAVFLPEKRFVDPHGGLDDLAAKVLRTPGTPEASFSDDPLRMLRAARFAAQLDF-E 191
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ + + A + + I+S+ER+ E+NKLL + +P+ + + + G+ + ++ +
Sbjct: 192 VAPEVVAAMTAMAERIDIVSAERVQGELNKLLLSAHPVKGLRLLVDTGLADRVLPELPAL 251
Query: 242 SLDQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------- 281
L+ L+ + +A + E D LR L+ K
Sbjct: 252 RLESDEHHRHKDVYEHSLTVLEQAIDLEEDGPDLTLRIAALLHDIGKPKTRRFEGDGRVS 311
Query: 282 ---------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDK 323
E+ + + E Y+
Sbjct: 312 FHHHEIVGAKLAKKRLAALKYSNELIRDVSRLIELHLRFHGYGTGEWTDSAVRRYVRDAG 371
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVKY 373
++ +L + + + + L G++++
Sbjct: 372 PLLTRLHKLTRSDCTTRNKRKANALARAYDGLERRIEELQEQEELDAIRPDLDGNEIMAL 431
Query: 374 -GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ PG +G + L +E L++ A+ Q
Sbjct: 432 LDVSPGPVIGKAYAFLLDLRMEKG-PLGKEAAGAALKEWWAAQQ 474
>gi|110638922|ref|YP_679131.1| tRNA adenylyltransferase [Cytophaga hutchinsonii ATCC 33406]
gi|110281603|gb|ABG59789.1| tRNA adenylyltransferase (tRNA nucleotidyl transferase) [Cytophaga
hutchinsonii ATCC 33406]
Length = 479
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 83/445 (18%), Positives = 160/445 (35%), Gaps = 55/445 (12%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + + ++ ++ IVGG VRD +M+ +DID + + + + +
Sbjct: 16 HIRAVAAAADELGLETYIVGGYVRDLIMDRDNKDIDFVCLGSGIELAQKVAANMGEHVQV 75
Query: 74 SI--SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
I ++GT I + R + V + + D LRRDFTINAL
Sbjct: 76 HIFKTFGTAMINAGDTELEFVGARKESYDFNSRKPTVESGTLEDDQLRRDFTINALAICL 135
Query: 132 QG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+++D G++D++ + IK DA +D LR++R RF +I++
Sbjct: 136 NKARFGELVDPFDGVSDIKRKIIKTPQDALLTFSDDPLRMIRAVRFATQLNF-DIEAATF 194
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--------- 238
A K L I+S ERI E+NK++ A P +Y G+ K+IF +
Sbjct: 195 QAIATNKDRLSIVSMERISQELNKIISAPVPSYGFKLLYISGVLKDIFPEFVALHGVESI 254
Query: 239 --QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP-------- 288
+ + + + V + D LR+ ++ K ++
Sbjct: 255 DNKSHKDNFYHTLQVLDNVAKVSDDLWLRWAAILHDIAKPLTKRFVERIGWTFHGHEDKG 314
Query: 289 ---------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333
E + + +L E+ +
Sbjct: 315 ARMVPAIFRKLRLPLNEKMDMVAKLVRLHLRPISLVKDEVTDSAVRRLMFEAGEHFSDLM 374
Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGIPPGK 379
L ++T ++ + + L + ++ ++G+D++K + I PGK
Sbjct: 375 ILCRADVTSKNNNKVKRYLENFDKVERKVIEVEEKDQQRNFQPVVSGEDIMKTFDIKPGK 434
Query: 380 KVGNILVHCKQEWINSSFQLSQEDL 404
+G+I + + Q E L
Sbjct: 435 VIGDIKADLIEAILEGDVQNEYEIL 459
>gi|260198967|ref|ZP_05766458.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T46]
gi|289441350|ref|ZP_06431094.1| tRNA adenylyltransferase [Mycobacterium tuberculosis T46]
gi|289414269|gb|EFD11509.1| tRNA adenylyltransferase [Mycobacterium tuberculosis T46]
Length = 450
Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats.
Identities = 82/431 (19%), Positives = 157/431 (36%), Gaps = 55/431 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
H + L + S+ + +VGG+VRD+L+ D+D T P+RV I V
Sbjct: 21 HAALLRELGSVFAAAGHELYLVGGSVRDALLGRLSPDLDFTTDARPERVQEIVRPWADAV 80
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
T I +GT+ + +ITT R+D R+ +V F + D +RRDFT NA+
Sbjct: 81 WDTGIEFGTVGVGKSDHRMEITTFRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAV 140
Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
G+ +D +GGL LR + + +D LR+LR RF + G +
Sbjct: 141 RVTATGPGEFLDPLGGLAALRAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLGF-AVAPR 199
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
A + L +S+ER+ +E++KLL ++P I M G+ + ++
Sbjct: 200 VRAAIEEMAPQLARISAERVAAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRMAI 259
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------- 281
+++ L+ + +A + + D +LR+ L+ K +
Sbjct: 260 DEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHH 319
Query: 282 -----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIA 327
+ +++ + + + Y+ ++
Sbjct: 320 EVVGAKMVRKRMRALKYSKQMIDDISQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGALLP 379
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIP 376
+L + + + + + L G+ ++ IP
Sbjct: 380 RLHKLVRADCTTRNKRRAARLQASYDRLEERIAELAAQEDLDRVRPDLDGNQIMAVLDIP 439
Query: 377 PGKKVGNILVH 387
G +VG +
Sbjct: 440 AGPQVGEAWRY 450
>gi|296131529|ref|YP_003638779.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Cellulomonas flavigena DSM 20109]
gi|296023344|gb|ADG76580.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Cellulomonas flavigena DSM 20109]
Length = 507
Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats.
Identities = 78/462 (16%), Positives = 151/462 (32%), Gaps = 67/462 (14%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + + + + +VGG VRD+ + D+D+ T PD + +
Sbjct: 39 APDALELGTRFRQAGFDLALVGGPVRDAFLGRPSNDLDLTTPATPDEAEPLLAAWGDAHW 98
Query: 72 PTSISYGTIKII--------CRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDF 122
+GT+ + ++TT R+D R V F + D RRDF
Sbjct: 99 DIGREFGTVGARRFAGRRGATQDVVVEVTTYRTDAYDPTSRKPLVEFGDTLEGDLSRRDF 158
Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T+NA+ +D GL DL ++ D +D LR++R RF A G
Sbjct: 159 TVNAMAVRVPDLVFVDPFDGLADLAAGVLRTPIDPRRSFDDDPLRMMRAARFVAQLGF-R 217
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ D A ++ ++I+S+ER+ E+ KLL + +P + + G+ + ++ +
Sbjct: 218 LEDDTRAAIVEMASRIEIVSAERVRDELTKLLLSPHPRAGLEVLVETGLADHVLPELPAL 277
Query: 242 SLDQ----------LSQVIEAEQVFEWK---------IDSLLRFIVLISWQDKKSILSM- 281
L+ ++ ++ + D LR L+ K
Sbjct: 278 RLEIDEHHRHKDVYQHTLMVLDKAIALETGPDGAVPGPDLTLRLAALLHDIGKPRTRRFE 337
Query: 282 ---------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LF 317
K + + + + E
Sbjct: 338 PGGGVSFHHHEVVGAKLAAKRLKALRFDKHTVHDVARLTELHLRFHGYGDGEWTDSAVRR 397
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTG 367
Y+ ++ +L + + D+ L G
Sbjct: 398 YVTDAGPLLERLHRLTRSDSTTRNQRKANRLKAAYDDLEQRIATLREAEELASIRPDLDG 457
Query: 368 DDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+++ GI PG++VG + ++ + L +E LL
Sbjct: 458 TQIMEALGIRPGREVGEAYRYLLEQRMEHG-PLGEERARELL 498
>gi|239980804|ref|ZP_04703328.1| RNA nucleotidyltransferase [Streptomyces albus J1074]
gi|291452663|ref|ZP_06592053.1| RNA nucleotidyltransferase [Streptomyces albus J1074]
gi|291355612|gb|EFE82514.1| RNA nucleotidyltransferase [Streptomyces albus J1074]
Length = 488
Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats.
Identities = 79/446 (17%), Positives = 162/446 (36%), Gaps = 64/446 (14%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +VGG+VRD+L+ D+D T P++V+R+ V
Sbjct: 27 SPAADDLARRFEEAGHSLALVGGSVRDALLGRLGNDLDFTTDARPEQVLRLVRPWADAVW 86
Query: 72 PTSISYGTI----KIICRKK----YFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDF 122
I++GT+ + + + +ITT RS+ R +V + + D +RRDF
Sbjct: 87 EVGIAFGTVGCQKRAVVEGEEVTFEIEITTYRSEAYDRASRKPEVSYGDSIEDDLVRRDF 146
Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T+NA+ Q ID GGL DL + ++ G +D LR++R RF A +
Sbjct: 147 TVNAMAVALPQKTFIDPYGGLEDLSAQVLRTPGTPEASFSDDPLRMMRAARFAAQLDF-D 205
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ + + A + + I+S+ER+ E+NKLL + +P + + + G+ + ++ E+
Sbjct: 206 VAPEVVAAMTAMAERITIVSAERVRDELNKLLLSTHPRKGLTLLVDTGLAAHVLPELPEL 265
Query: 242 SLD-------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK------------ 276
L+ L+ + +A + E D LR L+ K
Sbjct: 266 RLESDEHHRHKDVYEHSLTVLEQAIDLEEDGPDLTLRLAALLHDIGKPRTRRFEKDGRVS 325
Query: 277 ----------SILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYLYG 321
+ E+ + + + +++ G
Sbjct: 326 FHHHEVVGAKMVKKRMTALKYANELVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAG 385
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLTGDDVV 371
+ +++L + + + + L G+ ++
Sbjct: 386 PQ--LSRLHKLTRSDCTTRNKRKAAALSRAYDGLEERIAQLQEQEELDAIRPDLDGNQIM 443
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSS 396
+ G+ PG +G + + +
Sbjct: 444 QLLGVGPGPVIGKAYAFLLDQRLENG 469
>gi|320095130|ref|ZP_08026839.1| polyA polymerase family protein [Actinomyces sp. oral taxon 178
str. F0338]
gi|319977997|gb|EFW09631.1| polyA polymerase family protein [Actinomyces sp. oral taxon 178
str. F0338]
Length = 532
Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats.
Identities = 87/460 (18%), Positives = 164/460 (35%), Gaps = 63/460 (13%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ + ++ ++ +VGG VRD+ + ++ D D+ T+ P R + + V
Sbjct: 40 AIMELGTVFESAGEEIALVGGPVRDAFLGVAPHDFDLTTSARPGRTEELLGQWGNAVWDI 99
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-Q 131
+GTI ++TT R+D G R +V F + D RRDFT+NA+
Sbjct: 100 GKEFGTIGARRGDVVVEVTTYRADSYQIGSRKPEVTFGDTLEGDLTRRDFTVNAMAMRLP 159
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ ++D GGL DL ++ A +D LRI+R RF A G ++D D + A
Sbjct: 160 RMALVDPCGGLADLAAGNLRTPVSAEQSFDDDPLRIMRAARFSAQLGM-DVDLDVMNAME 218
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD-------------- 237
L I+S+ERI +E+ +L+ + +P I + + G+ + +
Sbjct: 219 DMAHRLGIVSAERIRTELERLIVSPHPRRGIELLVHTGVASIVLPEVADLVSTVDEHRRH 278
Query: 238 --VQEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM----------- 281
V E +L + Q ++ E + D +LRF L+ K +
Sbjct: 279 KDVYEHTLTVVEQAMDLETGPDGPVPAPDFILRFAALMHDVGKPATRRFEPNGAVTFHHH 338
Query: 282 -----------AKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYLYGDKVM 325
+ + + + +++ G++
Sbjct: 339 EVVGAKLTRKRMRALHFDNATTDAVCQLVALHLRFHGYGESAWTDSAVRRYVSDAGEQ-- 396
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK-YG 374
+ +L + + D+ L GD +++ G
Sbjct: 397 LERLHRLTRADCTTRNRRKANRLSAAYDDLEERISTLREREELDAIRPDLDGDQIMEILG 456
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ P + V H + + L E L + AS
Sbjct: 457 LRPSRAVKMARDHLLELRMEHG-PLGPEAAREALERWWAS 495
>gi|94266573|ref|ZP_01290257.1| CBS:Phosphoesterase, RecJ-like:Polynucleotide adenylyltransferase
region:Phosphoesterase, DHHA1 [delta proteobacterium
MLMS-1]
gi|93452791|gb|EAT03323.1| CBS:Phosphoesterase, RecJ-like:Polynucleotide adenylyltransferase
region:Phosphoesterase, DHHA1 [delta proteobacterium
MLMS-1]
Length = 881
Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats.
Identities = 71/412 (17%), Positives = 132/412 (32%), Gaps = 22/412 (5%)
Query: 14 DLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L+ I + + + VGG VRD L+ D+D+ R ++ +
Sbjct: 468 ELLRIAGEVASGLGYHAFTVGGFVRDLLLQEKNFDLDLVVEGDGVRFADALARRLGGRVR 527
Query: 73 TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+ T + + D+ T R + V K D RRDF+INAL D
Sbjct: 528 IHKKFKTAVVKLPDGRKIDVATARLEYYDYPAALPTVELSSLKLDLYRRDFSINALAIDV 587
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + + +N + +ED RI R RF G +
Sbjct: 588 NPETFGTLVDFFNGQNDLKDKKLRVLHNLSFVEDPTRIFRAIRFEQRMGFSIGRHTERLI 647
Query: 190 SIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-----L 243
R ++E+ +L +NPL A+ + G+ + ++ + L
Sbjct: 648 KNAVRMNLYDRGYGYRFYNELRLMLSEENPLPALRRLAALGLLPFLSPRLRLDNRLEKVL 707
Query: 244 DQLSQVIEAEQVF---EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-- 298
+ + + E L+ + L ++ ++F LP +R L
Sbjct: 708 AEAQAALAWYDLLYLDEPCRSWLVYLLALTVDLKTAELMEFCQRFELPERLRRTLRREKV 767
Query: 299 -FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
PE Y + L LA+ + +
Sbjct: 768 AARQAATTLRRHEPESNSGIYHLLSGLAPEGLLFLLAIVRKKSAKKAISL------YVTE 821
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ L G D+ + G PG IL H ++ + ++++ H+ R
Sbjct: 822 LRTAQTALNGHDLKQLGYQPGPLFKEILQHLLDARLDGQVKTREDEVAHVRR 873
>gi|298345833|ref|YP_003718520.1| tRNA adenylyltransferase [Mobiluncus curtisii ATCC 43063]
gi|315654406|ref|ZP_07907314.1| polyA polymerase family protein [Mobiluncus curtisii ATCC 51333]
gi|298235894|gb|ADI67026.1| tRNA adenylyltransferase [Mobiluncus curtisii ATCC 43063]
gi|315491441|gb|EFU81058.1| polyA polymerase family protein [Mobiluncus curtisii ATCC 51333]
Length = 509
Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats.
Identities = 87/439 (19%), Positives = 156/439 (35%), Gaps = 58/439 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ + + + +VGG VRD+L+ ++ D+D+ T+ PD + V
Sbjct: 43 VVPLGEVFAAAGYEIALVGGPVRDALLGITPHDLDLTTSARPDETEAVLRSWADAVWDVG 102
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132
+YGT+ F+ITT RSD R V F + D RRDFT+N++
Sbjct: 103 RNYGTLGARKGDDVFEITTYRSDDYQRDSRKPTVKFGDTLEGDLFRRDFTVNSIALRLPT 162
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+++D GGLNDL ++ D +D LRI+R RF A E ++D + + A
Sbjct: 163 LELVDPTGGLNDLAAGILRTPIDPEESFSDDPLRIMRAARFAAQL-EFDVDYETMQAMET 221
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------------- 238
++ L I+S ER+ +E+++L+ A P + M + +++ ++
Sbjct: 222 MRERLTIVSPERVQAELSRLMIASAPRRGLELMVYTRLAEQVLPELMDLLDMQDEHKRHK 281
Query: 239 --QEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM------------ 281
E SL L Q I E + D +LR ++ K +
Sbjct: 282 DVWEHSLTVLDQAIAQETGPDGPVPAPDLVLRLAAILHDIGKPATRRFEAGGVVTFHQHD 341
Query: 282 ----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAK 328
K + + + Y+ ++ +
Sbjct: 342 VVGARITRARLKALKYDKATIRDVSRLVALHQRFHGYGEQVWTDSAVRRYVTDAGPLLER 401
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKK----------PLFPLTGDDVVK-YGIPP 377
L + + D+ K L GD++++ GIP
Sbjct: 402 LHRLTRADCTTRNVKKAQRLAAAYDDLEARIKELKAQEELDAVRPELNGDEIMEILGIPA 461
Query: 378 GKKVGNILVHCKQEWINSS 396
G +VG +
Sbjct: 462 GPEVGKAYKFMLAYRMEHG 480
>gi|288556123|ref|YP_003428058.1| tRNA CCA-pyrophosphorylase [Bacillus pseudofirmus OF4]
gi|288547283|gb|ADC51166.1| tRNA CCA-pyrophosphorylase [Bacillus pseudofirmus OF4]
Length = 389
Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats.
Identities = 83/398 (20%), Positives = 167/398 (41%), Gaps = 33/398 (8%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+LS L++ + IVGGAVRD L + DIDI T P+ + +FS K
Sbjct: 15 DGAEPVLSQLHERGFLAYIVGGAVRDLLCKRPITDIDIVTEATPEEISTVFS----KTFS 70
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ + T+ + F++TT R + D L RDFTIN++ D++
Sbjct: 71 MNNQHQTVIVRHSGCLFEVTTQRGK--------------SIEEDLLMRDFTINSIALDKK 116
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ D + G +D++N+ + + R+ ED LR+LR +RF + G K ++ G + +
Sbjct: 117 GQLFDPLDGQSDIKNQ-VIRSHNPAARMSEDPLRMLRAYRFSSDLGFKVAENLGEIIRYQ 175
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQLSQVIE 251
A+ ++ ERI E KL+ A+ + + G++K + + ++D L ++
Sbjct: 176 AETL-SRVAMERISKEFYKLVSGPFKHTALKELASSGLYKHCGLPQLDKKAIDFLRELPV 234
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ E I + + + ++ S K F ++ + + + S
Sbjct: 235 LKNEKEEVIWTFICLSMNLTS------ESHLKGFLFSNQLTKDVRNRLAAFSYRNNHS-- 286
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
Y +V + ++ N ++ IL + + K +TG D++
Sbjct: 287 WEVLSLYRASIEVALDVERVREL---TNESYIAKEKILTIWEQLPIQTKNDLAVTGTDLL 343
Query: 372 KYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ G +G L+ +++ + ++ L +
Sbjct: 344 RHFKREAGPWLGEALLWVEEQVVTGYLPNEKDTLLQAI 381
>gi|325269379|ref|ZP_08135996.1| polyA polymerase family protein [Prevotella multiformis DSM 16608]
gi|324988300|gb|EGC20266.1| polyA polymerase family protein [Prevotella multiformis DSM 16608]
Length = 485
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 73/458 (15%), Positives = 157/458 (34%), Gaps = 55/458 (12%)
Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66
+ + +I ++ + +VGG VRD + DID+ +V
Sbjct: 21 AELLDNDIFHHISDAADRLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVASGLKGI 80
Query: 67 RYK--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ + ++GT ++ + + R + + V + D RRDFTI
Sbjct: 81 LGRKAHLSVFRNFGTAQVKYKDTEVEFVGARKESYSHDSRKPAVEDGTLEDDQNRRDFTI 140
Query: 125 NALYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
NAL + D GG++DL + I+ D +D LR++R RF A
Sbjct: 141 NALAVCLNRERFGELVDPFGGVDDLWDGIIRTPLDPDVTFSDDPLRMMRCVRFAAQLNFL 200
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-- 238
I+ + A + + ++I+S ERI E+NK++ P V +Y G+ + I ++
Sbjct: 201 -IEEETFEALERNAERIRIISGERIEEELNKIMMTPTPSKGFVELYRCGLLQLILPELVA 259
Query: 239 ---------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKF 285
+ + + + + + LR+ L+ K F
Sbjct: 260 LDVVETRNGRAHKNNFYHTLEVLDNICRHTDNLWLRWAALLHDIGKAKCKRWDTAAGWTF 319
Query: 286 SLPREI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ ++ + + ++ E+
Sbjct: 320 HNHNFVGAKMVPGIFRRLKLPMDSKMKYVQKLVDLHMRPIVIADEEVTDSAVRRLMNDAG 379
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY 373
+ + L ++T ++ + L + ++ + G+++++
Sbjct: 380 DDIDDLMTLCEADITSKNAVRKKRFLDNFRVVREKLKDLKERDYKRLLQPCIDGNEIMEM 439
Query: 374 -GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ P ++VG + K +++ +E L LL K
Sbjct: 440 FHLRPSREVGVLKQTLKDAVLDNQVPNEREPLLALLTK 477
>gi|85859113|ref|YP_461315.1| poly A polymerase [Syntrophus aciditrophicus SB]
gi|85722204|gb|ABC77147.1| poly A polymerase [Syntrophus aciditrophicus SB]
Length = 495
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 91/433 (21%), Positives = 164/433 (37%), Gaps = 58/433 (13%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
I+ L + ++ VGG VRD L + D DI T+ P+ + +F + + I +
Sbjct: 74 IVRRLKEAGHEAWFVGGCVRDYLRGVEAGDYDIVTSASPEAIQALFP----RTVGVGIRF 129
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVI 136
G + +I ++ T RS + D LRRDFTINA+ D ++I
Sbjct: 130 GILIVIENGYSHEVATYRSP-------------GGYLEDVLRRDFTINAMLQDPDTGRII 176
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
D VGG DL R I+ +G R ED LR+LR RF A+ +++ + L A
Sbjct: 177 DEVGGRADLEGRVIRAVGRPDERFAEDRLRMLRAVRFAANLAF-SVEQETLEAIQAHAPE 235
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-----------SLDQ 245
++ +S ER+ E+ +LL + + G+ +E+ +V + D
Sbjct: 236 IQEVSVERVADELTRLLTLGGAGEGMRLLMKTGLLEELLPEVAAMRGVKQPPKFHPEGDV 295
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI---------------------LSMAKK 284
+ ++ + DS L + VL+ K + + ++
Sbjct: 296 WTHTVKMLDLMSIPADSRLAWGVLLHDVGKPDVQSRDHRGIHFYGHVQQGEILAEGILRR 355
Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344
PR ++ C+ + + +L L L++ + D
Sbjct: 356 LRFPRADMECILGLIRCHMSFINVREMRTSRLKRLLRSPDFDLLLELHRLDCLGSNGVLD 415
Query: 345 TCF--ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402
+ + + +P L G D+++ G PG IL + +N S +E
Sbjct: 416 SYEYCLQKQRELTDEQLRPPPLLRGKDLLEMGYLPGALFREILNAVEDAQLNGSIATPEE 475
Query: 403 DLHHLLRKLIASS 415
R+L+ +
Sbjct: 476 A-----RQLVKNR 483
>gi|94269324|ref|ZP_01291432.1| CBS:Phosphoesterase, RecJ-like:Polynucleotide adenylyltransferase
region:Phosphoesterase, DHHA1 [delta proteobacterium
MLMS-1]
gi|93451263|gb|EAT02156.1| CBS:Phosphoesterase, RecJ-like:Polynucleotide adenylyltransferase
region:Phosphoesterase, DHHA1 [delta proteobacterium
MLMS-1]
Length = 881
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 70/413 (16%), Positives = 132/413 (31%), Gaps = 23/413 (5%)
Query: 14 DLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L+ I + + + VGG VRD L+ D+D+ R ++ +
Sbjct: 468 ELLRIAGEVASGLGYHAFTVGGFVRDLLLQEKNFDLDLVVEGDGVRFADALARRLGGRVR 527
Query: 73 TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+ T + + D+ T R + V K D RRDF+INAL D
Sbjct: 528 IHKKFKTAVVKLPDGRKIDVATARLEYYDYPAALPTVELSSLKLDLYRRDFSINALAIDV 587
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + + +N + +ED RI R RF G +
Sbjct: 588 NPETFGTLVDFFNGQNDLKDKKLRVLHNLSFVEDPTRIFRAIRFEQRMGFSIGRHTERLI 647
Query: 190 SIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-----L 243
R ++E+ +L +NPL A+ + G+ + ++ + L
Sbjct: 648 KNAVRMNLYDRGYGYRFYNELRLMLSEENPLPALRRLAALGLLPFLSPRLRLDNRLEKVL 707
Query: 244 DQLSQVIEAEQVF---EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-- 298
+ + + E L+ + L ++ ++F LP +R L
Sbjct: 708 AEAQAALAWYDLLYLDEPCRSWLVYLLALTVDLKTAELMEFCQRFELPERLRRTLRREKV 767
Query: 299 -FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
PE Y + L LA+ + +
Sbjct: 768 AARQAATTLRRHEPESNSGIYHLLSGLAPEGLLFLLAIVRKKSAKKAISL------YVTE 821
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ L G D+ + G PG IL H ++ + ++++ +R+
Sbjct: 822 LRTAQTALNGHDLKQLGYQPGPLFKEILQHLLDARLDGQVKTREDEV-AHVRR 873
>gi|303245446|ref|ZP_07331730.1| Polynucleotide adenylyltransferase region [Desulfovibrio
fructosovorans JJ]
gi|302493295|gb|EFL53157.1| Polynucleotide adenylyltransferase region [Desulfovibrio
fructosovorans JJ]
Length = 931
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 78/421 (18%), Positives = 140/421 (33%), Gaps = 31/421 (7%)
Query: 16 INILSLLNKGE-------DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+IL+LL +VGG VRD L+ D+D+ ++
Sbjct: 471 KDILALLKNAGKLGQKLGYAVYVVGGFVRDVLLKHPNTDVDLVVEGDGIAFAAAMTREMG 530
Query: 69 KVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ T ++ + D+ T R + V K D RRDFT+NAL
Sbjct: 531 GRYKAHPKFKTAVVVLPSGQRVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTVNAL 590
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ + + +ED RI+R RF +G +
Sbjct: 591 AVHLSPDRYGELVDFFGAQRDIKDRVLRVLHSLSFVEDPTRIVRAIRFSERFGFRIGGQT 650
Query: 186 GLVASIKAKK-GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-----DVQ 239
+ + LS R++ E+ +LE K PL + M++ + I +
Sbjct: 651 DRLIKNAVRHSFFHRLSGSRVFHELQLILEEKTPLACLRRMHDYKLLAAIHPLLALTPPR 710
Query: 240 EISLDQLSQVIEAEQVFEWKID---SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
E L ++ VI ++ + L+ F+ L S D + + K+ + + +
Sbjct: 711 ETVLMEVENVINWYRLLYIEPQPQAWLVYFLALCSGMDAEQFAVVGKRLNFSKRTAGDIA 770
Query: 297 SFF-NCNFNQKTLSIPEIKK----LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ + L E K Y + + + +A + + L
Sbjct: 771 TLRMRIRETAQGLFNWEYHKGPLSELYFLMEPLPVEGALFLMARNPREPLQKYVSLYLTT 830
Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
L +TG+D+ GI PG +IL + I+ E L + R+L
Sbjct: 831 LR------GKRLEITGNDLKGIGIAPGPDYTSILRRVRGSVIDGHAPCRAEQL-EMARRL 883
Query: 412 I 412
Sbjct: 884 A 884
>gi|212702794|ref|ZP_03310922.1| hypothetical protein DESPIG_00824 [Desulfovibrio piger ATCC 29098]
gi|212673656|gb|EEB34139.1| hypothetical protein DESPIG_00824 [Desulfovibrio piger ATCC 29098]
Length = 893
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 71/405 (17%), Positives = 138/405 (34%), Gaps = 23/405 (5%)
Query: 15 LINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ ++L L + + +VGG VRD L++ D+D R +
Sbjct: 466 VRHLLELAGRLGQQLNMPVYVVGGFVRDLLLDRPNHDVDFVVEGEGVAFARALAAELGGR 525
Query: 71 IPTSISYGTIKIICRKK-----YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + T +I + D+ T R + V K D RRDFTIN
Sbjct: 526 VREHRKFLTSMVIYHDEDGLEQRIDVATARLEYYESPAALPTVELSSIKMDLFRRDFTIN 585
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEK-NI 182
AL + + + + +ED R LR RF YG
Sbjct: 586 ALAIRLDCTPYGQLVDFFGGQRDIKEGVLRVLHTLSFVEDPTRSLRAVRFEQRYGFHIGP 645
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
++ L+ ++ + L LS +RI++E + + ++P + G+ + + +
Sbjct: 646 SAEKLIKNLLSLHMLDKLSGKRIFNEYTHICDEEDPAACFERLDGLGLLRALGPSLSLTP 705
Query: 239 -QEISLDQLSQVIEAEQVFEWK---IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294
+ L Q+ ++ ++ + + L+ F+ L + + + LP +
Sbjct: 706 SKRQILQQVCSMLNWYRLLYFDESVENWLIYFLALGHRLNYAEVSANFAALGLPEGRKQE 765
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK---IFLALHYNNLTHQDTCFILQV 351
++ + + K G + L L Y +D+ +
Sbjct: 766 ILQQRESMRHVQPKLARWQKAFEAGTGRISELYLLLEKFSLEFLLYIMAGVEDSGLQKNL 825
Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
I W++ + G D+ GI PG G IL ++
Sbjct: 826 SRYITQWRREKPDIDGRDLRDMGIAPGPLFGRILRAVLVGKLDGE 870
>gi|332662823|ref|YP_004445611.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Haliscomenobacter hydrossis DSM 1100]
gi|332331637|gb|AEE48738.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Haliscomenobacter hydrossis DSM 1100]
Length = 471
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 85/457 (18%), Positives = 165/457 (36%), Gaps = 59/457 (12%)
Query: 16 INILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR--YK 69
IL ++++ K + +VGG VRD L+ +DIDI + + +
Sbjct: 10 RKILEIVSQAAAKMQVPAYVVGGYVRDRLLARPSKDIDIVCVGSGIELAQRVAGELHPVP 69
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I +GT I R + R + V + D RRDFTINAL
Sbjct: 70 RITVFQRFGTAMIKHRDLEVEFVGARKESYRHDSRKPAVEDGSLEDDQNRRDFTINALAV 129
Query: 130 DQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ID GL DL + I+ D +D LR++R RF I+
Sbjct: 130 SLNEADFGNIIDPFDGLGDLERKIIRTPLDPGKTFSDDPLRMMRAIRFATQLDFV-IEPA 188
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
A K+ +KI+S+ERI +E+NK+++A P +++ G+ + IF ++
Sbjct: 189 TFKAIDTYKERIKIISAERIATELNKIIQAPKPSVGFKLLFDSGLLQLIFPEMTALHGVE 248
Query: 239 ----QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL------- 287
+ + + + + + + LR+ ++ K +
Sbjct: 249 IRNGRAHKDNFYHTLEVLDNLSKKTENLWLRWSAILHDIAKPPTKRFHPEQGWTFHGHEV 308
Query: 288 ----------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
+ ++ + +L+ EI L+
Sbjct: 309 MGATMTATIFRRFRLPMDQKMKYVQKLVRLHLRPISLTKEEITDSAMRRLLVDAGDDLED 368
Query: 332 FLALHYNNLTHQDTCFILQVLSDII-------------HWKKPLFPLTGDDVVK-YGIPP 377
+ L ++T ++ + + L + H + P+TG+ +++ +GI P
Sbjct: 369 LMLLCEADITSKNPDKVKRYLENYELVRQRLQAVEERDHLRNWQPPITGEVIMEAFGIGP 428
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++VG I ++ ++ E + L+ + A
Sbjct: 429 SREVGEIKNFVREAILDGIIPNQYEAAYALMMEKAAE 465
>gi|222056094|ref|YP_002538456.1| hypothetical protein [Geobacter sp. FRC-32]
gi|221565383|gb|ACM21355.1| CBS domain containing protein [Geobacter sp. FRC-32]
Length = 875
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 74/426 (17%), Positives = 140/426 (32%), Gaps = 32/426 (7%)
Query: 12 DSDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ IL L + D VGG VRD LMN+ D+D+ F+
Sbjct: 456 APRIQQILHELGRVGDSLDVPVFAVGGFVRDLLMNVPNLDMDVTVEGDGILFAETFAGQY 515
Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + +GT I+ D+ + R + V K D RRDFTIN
Sbjct: 516 GCRVKSHDKFGTAVIVFPDGFKIDVASTRLEYYVSPGALPTVERSSLKMDLYRRDFTINT 575
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDS 184
L + + + + +ED R+ R RF
Sbjct: 576 LAIRLNESEFGVMLDFFGAQRDLQDHLIRVLHNLSFVEDPTRVFRAIRFEQRLDFTIAKH 635
Query: 185 DGLVASIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ---- 239
+ L+ L +R+ +E+ +L PL AI M + G+ + I +++
Sbjct: 636 TENLIKNAVKMDFLEKLGGKRLLTELVYILRENEPLKAIERMASFGLLRFIHPELELTTG 695
Query: 240 -EISLDQLSQVIEAEQVFEWK---IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
L++ ++I + + F+VL + + ++ R L
Sbjct: 696 TRNMLEEARRIISWFDLLFLNRAYERWAVYFLVLCESLTHDQLWGACTRLAVSEHYREKL 755
Query: 296 ISFFNC-------NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
+ + K Y + + L +A + +
Sbjct: 756 FETRRQGEEALATIEKKIARTGAIEKSEVYFLLKDLPVEVLLYLMAKTGSEEVKKWLSLY 815
Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH--- 405
L ++ + +TG D+ + +PPG ++L + ++ +++L
Sbjct: 816 FTQLQNVRCF------VTGHDLKRLQVPPGPLYKDLLDLVLKARLDGRVISREDELELVR 869
Query: 406 HLLRKL 411
H L+KL
Sbjct: 870 HKLKKL 875
>gi|323702567|ref|ZP_08114230.1| CBS domain containing protein [Desulfotomaculum nigrificans DSM
574]
gi|323532541|gb|EGB22417.1| CBS domain containing protein [Desulfotomaculum nigrificans DSM
574]
Length = 910
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 77/415 (18%), Positives = 151/415 (36%), Gaps = 22/415 (5%)
Query: 17 NILSLLNKGE-------DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
I+++L K + VGG VRD L+ + D+D+ + +
Sbjct: 462 RIMNILTKAGEVADKLNYQVYAVGGLVRDVLLKVENFDVDLVVEGNGILMANQLAAVLGG 521
Query: 70 VIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ T +GT +II + D+ T R + V + D RRDFTINA+
Sbjct: 522 RVRTHEKFGTAEIIFPDGYWVDVVTARVEYYEYPAALPQVEQSSLRHDLYRRDFTINAMA 581
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGE-KNIDSD 185
+ + R + +ED RILR RF Y +
Sbjct: 582 VALNPGRFGELVDYFNGREDLQIGAIRVLHNLSFVEDPTRILRAIRFEQRYDMAIEPQTM 641
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--- 242
L+ +K + LS+ER+W E+ +LE +P + + M G++ +F ++
Sbjct: 642 RLIKEAVREKVIARLSTERMWGELKSILEEADPEHMLDRMSELGVWDYLFPEITFWEVQP 701
Query: 243 -LDQLSQVIEAEQVFEWKID---SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ ++ Q + + + W L F+ ++ W + + + ++++L R ++
Sbjct: 702 VISEMPQALMILRNWGWAEPAEKWLPYFLAILHWTTQDTAYQICQRYNLGRRQTDKVLDT 761
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
++ + L L ++ +++ + +H
Sbjct: 762 IAHWREALRRLSAPEDVPLSALNK-IVQTLPREAYPLFLTLLEDKNAIRRFRLVMESVHK 820
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
KP + G D+ G PG L Q ++ Q +E+L +R +
Sbjct: 821 HKPT--VNGKDIRDMGFKPGPLYRRALDSVWQARLDGLVQTREEEL-AYVRAYLE 872
>gi|317178996|dbj|BAJ56784.1| poly(A) polymerase [Helicobacter pylori F30]
Length = 409
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 76/403 (18%), Positives = 140/403 (34%), Gaps = 22/403 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + +L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 4 FELEKELQELFEIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHF 63
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--ADSLRRDFTINA 126
+V+ T I +GTI + ++ITT R + + D RRDF++NA
Sbjct: 64 RVLETGIKHGTITAFKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNA 123
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N + N+ I+ +G+A R ED LRILR RF G K +
Sbjct: 124 IAYSPTKGIIDPFKGQNAIENQMIECVGEARLRFFEDALRILRALRFSTTLGFKIV---- 179
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + ++ + + L
Sbjct: 180 ---------LSTKEAVFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVTQ 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ E + + LR + P++ + C+
Sbjct: 231 EEIENLEFLKNAPFNLELR------LLGFFKHQKSLENLRYPKKTCVLFLKAKECHKAFL 284
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ + +KK L
Sbjct: 285 NIYNKTELKFLLKNYDLEPFNLALDFYALKNPKRALKIKSLLKEISNANEPFKKEHLALK 344
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +++G IL C I S E L ++
Sbjct: 345 GGTLQNLGYQR-QQIGEILNACLNLVIAHPENNSLEWLIKWVK 386
>gi|304383950|ref|ZP_07366407.1| polyA polymerase [Prevotella marshii DSM 16973]
gi|304335028|gb|EFM01301.1| polyA polymerase [Prevotella marshii DSM 16973]
Length = 474
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 73/462 (15%), Positives = 160/462 (34%), Gaps = 60/462 (12%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
+ +++ FH I + + + +VGG VRD + DID+ +V
Sbjct: 9 LTTLLDQNIFH-----RISEAADDLQLECYVVGGYVRDLFLERPSNDIDVVVVGSGIKVA 63
Query: 61 RIFSKTRYK--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
+ + + +GT ++ R + R + + +V + D
Sbjct: 64 DRLKQLLGRKAHLSVFKRFGTAQVKYRDIEIEFVGARRESYSHDSRKPIVEDGTLEDDQC 123
Query: 119 RRDFTINALYADQQGKV----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
RRDFTINAL + ID G+ D+ + I+ D +D LR++R RF
Sbjct: 124 RRDFTINALAVCLNRERFGQLIDPFDGIADMEDGIIRTPLDPDVTFSDDPLRMMRCVRFA 183
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
I+ + A ++ LKI+S ERI E++K++ + P V ++ G+ I
Sbjct: 184 TQL-HFFIEDETFEALVRNTDRLKIVSGERIVDELHKIMMTRTPSKGFVDLHRTGLLPLI 242
Query: 235 FLDV-----------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA- 282
++ + + + + + + + LR+ L+ K
Sbjct: 243 MPELCAMDMVETRNGKAHKNNFYHSLEVLDNICKTTDNLWLRWAALLHDIGKPKSKRWDN 302
Query: 283 ---KKFSLPREI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
F I ++ + + ++ +
Sbjct: 303 TSGWTFHNHNYIGAKMLPQIFKRMKLPMDAKMKYVQKMVDLHMRPIVIADDIVTDSAVRR 362
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTG 367
+ + L ++T ++ + L + ++ + G
Sbjct: 363 LVNDAGDDIDDLMTLCEADITSKNAIRKQRFLENFRIVREKIADLKEKDYKRLLQPVIDG 422
Query: 368 DDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+++++ + P ++VG + K+ ++++ +E L LL
Sbjct: 423 NEIMEMFHLRPSREVGILKKALKEAVLDNTVPNEREPLMQLL 464
>gi|251796453|ref|YP_003011184.1| polynucleotide adenylyltransferase region [Paenibacillus sp. JDR-2]
gi|247544079|gb|ACT01098.1| Polynucleotide adenylyltransferase region [Paenibacillus sp. JDR-2]
Length = 417
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 96/406 (23%), Positives = 175/406 (43%), Gaps = 18/406 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
I +L L + ++ VGG VRD+ M L ++D+DIAT+ P++VM IF + IPT
Sbjct: 13 QAIPVLEALVQQGFEAVFVGGCVRDTAMGLPIKDVDIATSARPEQVMSIFPRC----IPT 68
Query: 74 SISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+ +GT+ ++ +++TT R+ + R +V F D LRRD TINA+ +
Sbjct: 69 GLQHGTVTVLHDGGSYEVTTFRTESEYEKHRRPLQVEFIDRLDGDLLRRDLTINAMAMNA 128
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G++ D GLNDL+NRTI+ +GDA R ED LR+LR RF + E I A +
Sbjct: 129 AGELYDPFRGLNDLKNRTIRCVGDADARFQEDALRMLRTIRFASQ-FEFTIAHTTWRALV 187
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ ++ L+ ++ ER+ +E+++++ +P A+ + + + + ++L+QV
Sbjct: 188 RHRELLRHIAMERVHAELDRMIGGAHPGRALHLLAASKLLRYTGTVLPAA--EKLAQVDP 245
Query: 252 AEQVFEWKIDS-------LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ + D LL + +S ++ + + + F N
Sbjct: 246 SYSELDKLNDPDARYAALLLAEGITLSDAEETLKALRLPTQKMNAILSVLFVQFAMNQLN 305
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
Q++ YG++ L I + + + H + L +
Sbjct: 306 QQSGLRLVWTSTVLQYGEEASRRWLSI-VVWNQKHHLHDQKNLFDKWLDAMPAMTLKQLN 364
Query: 365 LTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
L G + + G G +L E ++ L +
Sbjct: 365 LNGKQLAEELQRVTGNWTGLMLKRLLLEVALDKLPNEKDLLLKQAQ 410
>gi|134298994|ref|YP_001112490.1| polynucleotide adenylyltransferase region [Desulfotomaculum
reducens MI-1]
gi|134051694|gb|ABO49665.1| Polynucleotide adenylyltransferase region [Desulfotomaculum
reducens MI-1]
Length = 907
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 79/408 (19%), Positives = 144/408 (35%), Gaps = 19/408 (4%)
Query: 17 NILSLLNKGE-------DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
I+++L K + VGG VRD L+ + D+D+ + +K
Sbjct: 460 RIMNILTKAGEVAEGLNYQVYAVGGLVRDVLLKVENLDVDLVVEGNGIEMANELAKVIGG 519
Query: 70 VIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ +GT +II + D+ T R + V K D RRDFTINA+
Sbjct: 520 RVRPHEKFGTAEIIFPDGYWVDVVTARVEYYEYPAALPQVEQSSLKHDLYRRDFTINAMA 579
Query: 129 ADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NID 183
+ DY G DL+N I+ + + +ED RILR RF Y
Sbjct: 580 VALNPERFGELVDYFNGREDLQNGAIRVLH--NLSFIEDPTRILRAIRFEQRYDMDIEPQ 637
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS- 242
+ L+ +K + LS+ER+W E+ +LE +P + + + G++ +F ++
Sbjct: 638 TLRLIKEAVREKVIARLSTERMWGELKHILEEADPEHMLDRLSELGVWDYLFPEITFWEV 697
Query: 243 ---LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ ++ Q + + + W + +S + + R
Sbjct: 698 QYVISEIPQALMILRNWGWAEPAEKWLPYFLSILHLTAQETAYTICQRYNLGRRQTEKVL 757
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ + + I + A +D I + +
Sbjct: 758 DTIAYGRVALRRLSATEEVPLSELTKIVQTLPREAYPMFLTLLEDKNAIRRFRLVMESVN 817
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
K + G D+ G PG L Q ++ Q +E+L ++
Sbjct: 818 KNKPTVNGKDIRDMGYQPGPMYRRALDSVWQARLDGMVQTREEELEYI 865
>gi|308271595|emb|CBX28203.1| hypothetical protein N47_G35270 [uncultured Desulfobacterium sp.]
Length = 889
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 70/420 (16%), Positives = 140/420 (33%), Gaps = 26/420 (6%)
Query: 12 DSDLINILSLLNK----GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
LI IL + K ++ +GG VRD L+ +D+DI + ++
Sbjct: 476 SKHLIEILKTIGKVATETGFRAYAIGGFVRDLLLYRKNEDVDITVEGDGIAFAKKYAPLV 535
Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +GT +I DI + R + V K D RRDFTIN
Sbjct: 536 GARLHIYEKFGTAVVIFPDGFKIDIASARMEYYKFPAALPTVEMSSIKLDLFRRDFTINT 595
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ + + + + + +ED RI R RF +G
Sbjct: 596 MAIQLNPERFGTLIDFFAAQKDIKEKAIKVLHNLSFVEDPTRIFRAIRFEQRFGFTIGKL 655
Query: 185 DGLVASIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS- 242
+ K LS R++SE+ ++LE +NP+ +I+ + + G+ K I + +
Sbjct: 656 TSGLIENAVKMDFFKRLSGRRVFSELRQILEEENPIFSIIRLNDYGLLKVIDPSIILNNE 715
Query: 243 ----LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK------SILSMAKKFSLPREIR 292
L+ + QV+ + + + + ++ ++ + + + I
Sbjct: 716 LISYLNSVKQVVSWYNLLFLEESYIKWAVYFMALFGHCKKEVTENVCTRFEIAPKQKSIF 775
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
+ + Y I + +A+ + F + L
Sbjct: 776 CEERIESERCLRELENGYNITNDMLYNMLFPFRIEIILYMMAITKRERAKKAISFFITQL 835
Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
++G D+ G+ PG NIL +N + ++ ++ +
Sbjct: 836 RMA------KLSVSGKDLKTLGLEPGPLYKNILQAALNAKLNGLLKTKYDE-MDFIKNYV 888
>gi|242279424|ref|YP_002991553.1| polynucleotide adenylyltransferase region [Desulfovibrio salexigens
DSM 2638]
gi|242122318|gb|ACS80014.1| Polynucleotide adenylyltransferase region [Desulfovibrio salexigens
DSM 2638]
Length = 891
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 75/423 (17%), Positives = 136/423 (32%), Gaps = 29/423 (6%)
Query: 17 NILSLLNKGED-------KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
IL +L + ++ +VGG VRD L+ S D+D+ + +K
Sbjct: 471 KILDILETAGEMAAEIGTEAYVVGGFVRDVLLTKSNLDLDLVVESDGIAFAKKLAKRMDG 530
Query: 70 VIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ T +I + D+ T R + V K D RRDFTINAL
Sbjct: 531 RAKYHRKFKTAVVILPDGQRVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTINALA 590
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ + +ED RI+R RF + K
Sbjct: 591 VHINPSSFGKLVDFFGSQRDLKDKTIRVLHALSFVEDPTRIMRAIRFEQRFDFKIGGQTL 650
Query: 187 LVASIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--- 242
+ + LS R+ E+ +L N L +I M G+ + I ++ S
Sbjct: 651 NLIKNALKLNLINKLSGYRLTHEMRIILNEANVLRSIERMNELGVLEAIHPLMELNSARS 710
Query: 243 --LDQLSQVIEAEQVFEWKID---SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+ +L +++ + + F+ + K + + +FS R I
Sbjct: 711 QVIAELERLMSWYSLLYLEPPLSVWKTYFLAMCMGVSKAKMEQIYDRFSFSPSERREFIH 770
Query: 298 FFNCNF----NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353
+ F N + Y V + + +A + +
Sbjct: 771 LRDAVFWAAGNIMNIKQEMKPSEIYETLSPVPLEGVLFIMARTKREMIKKYVS------Q 824
Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ + +TG+D+ G+ PG L K ++ + E + L K+
Sbjct: 825 YLTSLRLKTIDVTGEDLKDLGLEPGPLYSEFLNQVKLACLDGKLKGRDEQIQFLKDKIKK 884
Query: 414 SSQ 416
S +
Sbjct: 885 SEK 887
>gi|326336252|ref|ZP_08202424.1| polyA polymerase family protein [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325691761|gb|EGD33728.1| polyA polymerase family protein [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 476
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 85/461 (18%), Positives = 159/461 (34%), Gaps = 60/461 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKT-- 66
I + ++ K +VGG VRD L+ + +DIDI T + +
Sbjct: 7 LTSPIFELISKIADQNNQKCFVVGGFVRDLLLKRGIAKDIDIVTLGSGIELAEKVAAQLP 66
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
I ++GT I + R + + +V D RRDFTIN
Sbjct: 67 NNPKISVFKNFGTAMIKTDSIDIEFVGARKESYREDSRKPLVENGTLADDQNRRDFTINT 126
Query: 127 LYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L +++D GG+NDL+N+ I+ + + +D LR+LR RF + I
Sbjct: 127 LAISLNQDSFGELVDPFGGINDLQNQIIRTPLEPNITYSDDPLRMLRAIRFATQLNFQ-I 185
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ L A K+ LKI+S+ERI E+NK+L + P +Y G+ I ++
Sbjct: 186 EEKSLQAIADNKERLKIISNERIAEELNKILASNKPSIGFKLLYETGLLSLILPELVALQ 245
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSL 287
Q + + + + D LR+ L+ K F
Sbjct: 246 GVDEKEGQRHKDNFWHTLEVVDNISLNTNDLWLRWAALLHDIGKAPTKRFDKKIGWTFHG 305
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI-------------------AK 328
+ ++ + + + +I
Sbjct: 306 HEFVGGKMVVKIFQRLRLPQNEKMKFVQKIVTMSSRPIIIAQDIVTDSAVRRLLFDAGDD 365
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVKY-G 374
+ + L ++T ++ + + H + P+TG++++ G
Sbjct: 366 FEALMTLCEADITTKNPQRYKKYHQNFQIVRQKVVEVEEKDHIRNFQPPITGEEIMALFG 425
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
+ P ++VG + K+ + S E+ +K+
Sbjct: 426 LKPSREVGQLKEVIKEAILEGIIGNSYEEAYPFMLEKAKKM 466
>gi|308182871|ref|YP_003926998.1| poly(A) polymerase [Helicobacter pylori PeCan4]
gi|308065056|gb|ADO06948.1| poly(A) polymerase [Helicobacter pylori PeCan4]
Length = 388
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 78/403 (19%), Positives = 144/403 (35%), Gaps = 22/403 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ D +L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELDKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHDF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + F+ D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSSRLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N + N+ I+ +G+A R ED LR+LR RF A G K S
Sbjct: 122 IAYSPTKGLIDPFKGQNAIENQMIECVGEARLRFFEDALRVLRALRFSATLGFKIASS-- 179
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + ++ ++
Sbjct: 180 -----------TKKAIFACKDLLKHLSKERLQSELNKLLMGKNAYEVAK------EYQEI 222
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+++ E++ F + + + P++ + C+
Sbjct: 223 LELVTQEKIENLGFLKSAPFNLELRLLGFFKRQKSLENLRYPKKTCVLFLKAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ + +KK L
Sbjct: 283 NIHNKTELKFLLKNYDLEPFNLALDFYALKNPKRALKIKSLLQEIFNANEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +++G IL C I S E L +R
Sbjct: 343 GGTLQNLGYRR-QQIGEILNACLNLVIAHPENNSLECLVEWVR 384
>gi|218783041|ref|YP_002434359.1| polynucleotide adenylyltransferase region [Desulfatibacillum
alkenivorans AK-01]
gi|218764425|gb|ACL06891.1| Polynucleotide adenylyltransferase region [Desulfatibacillum
alkenivorans AK-01]
Length = 896
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/417 (17%), Positives = 131/417 (31%), Gaps = 24/417 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ + + + ++ +VGG VRD +M+ +D D+ R F++ + +
Sbjct: 486 VRELGKIADAMGLEAFLVGGFVRDLVMSHKNEDFDVVVEGDGIAFARRFAQVHGYRVHSH 545
Query: 75 ISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+GT II D+ + R + VV T K D RRDFT+N +
Sbjct: 546 SEFGTAVIIMEDGFKIDVASARFEYYASPASLPVVETSSLKMDLYRRDFTVNTMAIQINE 605
Query: 134 KVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
K + + + +ED R+ R RF YG +
Sbjct: 606 KSFGTLIDYFGAQRDIKAKAIRVLHNLSFVEDPTRVFRAIRFEQRYGFSIGKLTSNLIKN 665
Query: 192 K-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ----- 245
+ LS R++SE+ +LE +NP+ A+ M + I D+ Q
Sbjct: 666 AVKMDFFRHLSGRRLFSELKLILEDENPIGAVDRMAGYNLLPFIHPDLDFGPEKQDLFES 725
Query: 246 ------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ + + L + L + ++ Y +
Sbjct: 726 VKEVLTWHDLQFMDDSYMKWAVQFLALFHGFDQDQVDAALLRLEIAPKFHDLFYEHRQYG 785
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ + Y + L LA + + L L +
Sbjct: 786 RQCLYRLEREDKMVNSELYRMLTLLPTEMLLFLLARAKSKKAKRRLTRFLTELKGVACL- 844
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS-FQLSQEDLHHLLRKLIASS 415
L+G + + GI PG +L ++ F E + +LI +
Sbjct: 845 -----LSGKTLKQMGIKPGPIYKKVLDAVLDARLDGKVFTFEDEMALAV--RLINDA 894
>gi|241889742|ref|ZP_04777040.1| CCA-adding enzyme [Gemella haemolysans ATCC 10379]
gi|241863364|gb|EER67748.1| CCA-adding enzyme [Gemella haemolysans ATCC 10379]
Length = 386
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 98/402 (24%), Positives = 175/402 (43%), Gaps = 33/402 (8%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I+IL + N+ ++ VGG VRD L+ DIDI T LPD+V ++F K+ I
Sbjct: 11 KGAIDILKIFNQNGYEAYFVGGCVRDYLLGEDFSDIDITTNALPDQVKKVFRKS----ID 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYAD 130
T I +GT+ I+ +++TT R++ + F + + D RRDFTINA+ D
Sbjct: 67 TGIQHGTVTILVNGDSYEVTTFRTEEDYANHRSPEKVEFVSNLREDLDRRDFTINAMALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
GK+ DY G +DL ++ I+ + + + R ED LR+LR FRF + G I+++ L A
Sbjct: 127 YNGKLFDYHNGDSDLSSKIIRTVNNPNERFYEDALRMLRAFRFSSKLGF-EIENNTLNAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K + +K +S ERI +E KLL K L ++ + + + + + +V
Sbjct: 186 KKNAELIKFVSIERIVNEFKKLLAGKGNLRSLELLLDSKL---------NLYIPFFKEVN 236
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + + L + I+ + K L + + F N K +
Sbjct: 237 TVQDLSSYSFCQSLYILSDINDI----LFEKLKFLKLSNKEIKLIKQFDLINQEFKNTTP 292
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
E+ + Y Y + + F N+ + DI +T +++
Sbjct: 293 IEL--ILYKYNREDVKFVCDYFGYDEEKNIDKCILT--INSFDDID--------ITSEEI 340
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+ Y PG + ++ +++ + ++ D+ L L
Sbjct: 341 INYIEKKPGPWIKTVISIIEKDILLHRLNNNKIDILDFLSNL 382
>gi|328952111|ref|YP_004369445.1| CBS domain containing protein [Desulfobacca acetoxidans DSM 11109]
gi|328452435|gb|AEB08264.1| CBS domain containing protein [Desulfobacca acetoxidans DSM 11109]
Length = 883
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/412 (17%), Positives = 138/412 (33%), Gaps = 22/412 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV-IPT 73
L + + ++ + +VGG VRD + DID+ R ++ V +
Sbjct: 471 LKQVGRVADELGYNAYVVGGFVRDLFLRHENLDIDLVIEGDAVTFARHYASRFQNVRVRV 530
Query: 74 SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ T II D+ T R++ +V K D RRDFTIN L
Sbjct: 531 FQKFKTAVIIYPDDFKVDVATARTEYYETPGALPIVERSSLKMDLYRRDFTINTLAVKLN 590
Query: 133 GKVIDYVGGLNDLRNR--TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ + + + + +ED R+ R RF +G K +
Sbjct: 591 ERHFGILIDYFGAQRDLKDGRISVLHNLSFVEDPSRVFRAIRFEQRFGFKITKLTANLIE 650
Query: 191 IK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-----ISLD 244
LS R++SE+ +L +NP+ AI + + K I ++ LD
Sbjct: 651 NAGRINFFDRLSGTRLFSELKLILMEENPIPAISRLAEFDLLKFIHPMLRYDANTTWLLD 710
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF----- 299
Q+ V+ + + ++ + + + + F +
Sbjct: 711 QIRGVLSWHDLLFLEDSYERWYVYFLGLIEPLKEEQLLELTRRLNMQTKFAETLLWAKGA 770
Query: 300 -NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + K Y ++ L +A + + + L ++
Sbjct: 771 ADHTLFRLYQRENPSPKEIYYLLHELSTEFLLYMMAKTRREGSKKAISLFITQLRNV--- 827
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
L G D++ G PG + IL H ++ Q ++++ +LR+
Sbjct: 828 ---RPHLAGKDLLDMGYEPGPRYKRILQHLLDAHLDGQVQTKEDEIASVLRR 876
>gi|325109887|ref|YP_004270955.1| polynucleotide adenylyltransferase region [Planctomyces
brasiliensis DSM 5305]
gi|324970155|gb|ADY60933.1| Polynucleotide adenylyltransferase region [Planctomyces
brasiliensis DSM 5305]
Length = 426
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 99/420 (23%), Positives = 170/420 (40%), Gaps = 23/420 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ ++ L + ++ GG VRD L+ D D+AT PD+V ++F + + +
Sbjct: 9 AVEVVQRLVEAGYQALWAGGCVRDFLLEGEPADFDVATDARPDQVRKLFGRR--RTLAVG 66
Query: 75 ISYGTIKIICRKK--YFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
S+G I ++ K+ ++ T R+D +DGR + + D+LRRDFTIN ++ D
Sbjct: 67 ESFGVIIVLGPKEAGQVEVATFRTDATYSDGRRPDAITFSTPQEDALRRDFTINGMFYDP 126
Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++IDYVGG +DL R ++ IGD H RI ED LR+LR RF A + +D ++A
Sbjct: 127 LAEELIDYVGGQSDLEARIVRAIGDPHARIEEDKLRMLRALRFAARFDFV-LDEATMLAI 185
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD------ 244
++++S ERI E K+L + + + G+ + ++ + D
Sbjct: 186 RTHGPQIEVVSQERITDEFRKMLRHPSRARGMEMIAESGLLTHVLPEIIDCWGDGNYATN 245
Query: 245 -----QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL-SMAKKFSLPREIRYFLISF 298
QL +V + L + ++ + K IS+
Sbjct: 246 TLEMLQLQRVAGFQLAAAIAFRCLSERVATGPQDRHRASELDVLGKRLRLSNQECDDISW 305
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK--IFLALHYNNLTHQDTCFILQVLSDI- 355
++ Q + +L LA + + Q L
Sbjct: 306 LAGHYRQIQNAEALTLAELKPLLADSRRDQLIEFARLADVVERHAPRGATYCEQYLQQTP 365
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
P LTG D++ G PGK +L + +N + S E L +L+ S
Sbjct: 366 QELLDPPPLLTGGDLIAMGQRPGKHFATVLAEVRAAQLNERLE-SPEQAMALANELLKQS 424
>gi|256846258|ref|ZP_05551715.1| tRNA adenylyltransferase [Fusobacterium sp. 3_1_36A2]
gi|256718027|gb|EEU31583.1| tRNA adenylyltransferase [Fusobacterium sp. 3_1_36A2]
Length = 451
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 102/439 (23%), Positives = 183/439 (41%), Gaps = 49/439 (11%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I IL+ LNK K IVGGA+RD L+ L +D+D T + + +FS+ K T
Sbjct: 14 IKILNKLNKYG-KGYIVGGAIRDILLGLKPKDVDFTTNLPYRTLKTLFSEYTPK--ETGK 70
Query: 76 SYGTIKIICRKKYFDITTLRSDLIT-------DGRYAKVVFTRDWKADSLRRDFTINALY 128
S+G ++I ++I R D KV F D + D RRDFTINA+
Sbjct: 71 SFGVLRIRIDNTDYEIAKFRKDNYEEKDGLKIIPEEKKVSFVDDIRNDLARRDFTINAMA 130
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+Q+ +ID G D+ NR I F+G A RI+ED LR+LR FRF + + ++ + +
Sbjct: 131 YNQKEGIIDLYNGQKDIENRIINFVGKAEERIIEDPLRVLRAFRFMSRL-KFSLSENTVE 189
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K K+ LK +S ERI E +KLL +N N + M + G+ + I +++
Sbjct: 190 AIKKQKELLKNISEERITMEFSKLLLGENIKNTLTLMKDMGVLELIIPELKATYDFNQYN 249
Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQ----------------------DKKSI 278
+F D LR+ L+
Sbjct: 250 PHHNLDLFNHIINVVSKVPADLELRYSALLHDIAKPIVQTFDEEGIAHYKTHEIVGADMA 309
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ + LP ++ ++ + + ++ + KL G + ++ A +
Sbjct: 310 RDILTRMKLPVKLIDTVVEIIKKHMILYRDVTDKKFNKLLSEMGYDNLWRLIEHCNADNS 369
Query: 338 NNLTHQDT------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
+ + + + + + + G D+++ G GK++G I +
Sbjct: 370 SKNNEVVSTENDLHERLKRAVEKQMQVTVNDLAVNGKDLIELGFT-GKEIGEIKKELLDK 428
Query: 392 WINSSFQLSQEDLHHLLRK 410
+++ Q +E++ + +++
Sbjct: 429 YLSEEIQNEKEEMLNYVKE 447
>gi|316940567|gb|ADU74601.1| CBS domain containing protein [Clostridium thermocellum DSM 1313]
Length = 877
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 88/408 (21%), Positives = 165/408 (40%), Gaps = 21/408 (5%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79
+ + + +VGG VRD ++ + DIDI ++ + +GT
Sbjct: 472 KIADDVGLNAYVVGGFVRDLILGVENFDIDIVVEGDALMFSEKLAQHYQAHLTKHDRFGT 531
Query: 80 IKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----K 134
++ D+ T R + VV K D RRDFTIN++
Sbjct: 532 AVVVLEDDFKIDVVTARKEYYEYPASLPVVEGGTIKDDLFRRDFTINSMAIKLNKSGFGN 591
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
++D+ GG DL+ I+ + + +ED RI R RF Y K + A +
Sbjct: 592 IVDFYGGRRDLQMGLIRIL--YNLSFVEDPTRIFRAIRFEQRYDFKMEEKTEEFAIKAIE 649
Query: 195 KGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD---------VQEISLD 244
G+ +S ERI E +L+ N + M + I K ++ + + + + +
Sbjct: 650 SGILGKVSHERINFEFFAMLKENNIWAILKRMEDLRILKNVYPEVVLSEDLKKLLKNAEE 709
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
L+ + E V E +LL ++L S + + +++K L +E + ++ F
Sbjct: 710 NLACLKEKVSVQESLDRTLLYLLILYSNMSFEKAVKLSEKMRLSKEYKSEILKFIEAKDI 769
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
+ I Y +++ ++I L + + FI +V+ I + K
Sbjct: 770 ILSNLSGNIDISNYDVYNELKELSMEILFVLCMLSNEKK---FIDRVILYINNLKNIKTC 826
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+TG D+ + G+ PG + +L E +N + Q ++L L+K+I
Sbjct: 827 VTGKDLKELGVKPGPEYAVLLDKVLAEKLNGNLQTYNDEL-EFLKKII 873
>gi|294790211|ref|ZP_06755369.1| tRNA adenylyltransferase [Scardovia inopinata F0304]
gi|294458108|gb|EFG26461.1| tRNA adenylyltransferase [Scardovia inopinata F0304]
Length = 468
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 82/458 (17%), Positives = 157/458 (34%), Gaps = 65/458 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + + + + +VGG VRD ++ S D+D T+ PD+ +
Sbjct: 4 PVAVELGHIFAEHGYELALVGGPVRDMILGRSAHDLDFCTSATPDQFEPLLKAWGDGFWD 63
Query: 73 TSISYGTIKIIC-----RKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+GT+ + + +ITT R+D + R +V + + D RRDFTIN+
Sbjct: 64 MGRKFGTLGTMKRLPQGEEVSIEITTYRTDAYQPNSRKPQVDYGSSLQGDLSRRDFTINS 123
Query: 127 LYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ +D GG++DL R ++ A +D LR++R RF A I D
Sbjct: 124 MAVRLPSLDFVDPFGGMDDLSKRLLRTPVAAEQSFSDDPLRMMRAVRFVAQLDF-RIALD 182
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
A ++I+S+ER+ E+ KLL +++P + + G+ + ++ + +D+
Sbjct: 183 TAEALSSMVDRIQIVSAERVRDELTKLLLSQHPRKGLESLVESGLADYVVPELPALHMDR 242
Query: 246 LSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK--------- 276
+ VF+ D +LR L+ K
Sbjct: 243 DPN-HHHKDVFDHTMKVLERAIALETSPDGPVPAPDLVLRLAALMHDIGKPRTRRFEPGG 301
Query: 277 -------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTL-SIPEIKKLFYLYGD 322
+ + + S + P Y
Sbjct: 302 KVSFYHHDLVGAKMTRKRLTSLRFDKHVVEDVSSLVELHLRFHGYVDEPWSDAAVRRYVK 361
Query: 323 K--VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDV 370
+ +L Q + Q + ++ ++ L GD +
Sbjct: 362 DSGHLYHRLNRLTRADATTQNRQKSLMFEQAMDELESRVNELKKKEDFEAIRPDLNGDQI 421
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+K G+ PG +VG+ H +++ E + L
Sbjct: 422 MKILGLAPGPQVGHAYKHMLDFRLDNGPVDQDEAVAEL 459
>gi|315657672|ref|ZP_07910554.1| polyA polymerase family protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315492144|gb|EFU81753.1| polyA polymerase family protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 509
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 87/439 (19%), Positives = 156/439 (35%), Gaps = 58/439 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ + + + +VGG VRD+L+ ++ D+D+ T+ PD + V
Sbjct: 43 VVPLGEVFATAGYEIALVGGPVRDALLGITPHDLDLTTSARPDETEAVLRSWADAVWDVG 102
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132
+YGT+ F+ITT RSD R V F + D RRDFT+N++
Sbjct: 103 RNYGTLGARKGDDVFEITTYRSDDYQRDSRKPTVKFGDTLEGDLFRRDFTVNSIALRLPT 162
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+++D GGLNDL ++ D +D LRI+R RF A E ++D + + A
Sbjct: 163 LELVDPTGGLNDLVAGILRTPIDPEESFSDDPLRIMRAARFAAQL-EFDVDYETMQAMET 221
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------------- 238
++ L I+S ER+ +E+++L+ A P + M + +++ ++
Sbjct: 222 MRERLTIVSPERVQAELSRLMIASAPRRGLELMVYTRLAEQVLPELMDLLDMQDEHKRHK 281
Query: 239 --QEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM------------ 281
E SL L Q I E + D +LR ++ K +
Sbjct: 282 DVWEHSLTVLDQAIAQETGPDGPVPAPDLVLRLAAILHDIGKPATRRFEAGGVVTFHQHD 341
Query: 282 ----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAK 328
K + + + Y+ ++ +
Sbjct: 342 VVGARITRARLKALKYDKATIRDVSRLVALHQRFHGYGEQVWTDSAVRRYVTDAGPLLER 401
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKK----------PLFPLTGDDVVK-YGIPP 377
L + + D+ K L GD++++ GIP
Sbjct: 402 LHRLTRADCTTRNVKKAQRLAAAYDDLEARIKELKAQEELDAVRPELNGDEIMEILGIPA 461
Query: 378 GKKVGNILVHCKQEWINSS 396
G +VG +
Sbjct: 462 GPEVGKAYKFMLAYRMEHG 480
>gi|315453290|ref|YP_004073560.1| poly(A) polymerase [Helicobacter felis ATCC 49179]
gi|315132342|emb|CBY82970.1| poly(A) polymerase [Helicobacter felis ATCC 49179]
Length = 409
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 83/401 (20%), Positives = 161/401 (40%), Gaps = 18/401 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK-TRYKVI 71
S L+ + +++ +G ++CIVGG+VRD L+ +D D+A++ PD++ + K+I
Sbjct: 17 SSLLTLHAMIEQGGYQACIVGGSVRDLLLGKEPKDYDLASSATPDQLKALLEGMEGIKII 76
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYA 129
++GT+ + F+ITT R + F + ++D RRDFTINAL
Sbjct: 77 ELGRAFGTLGVGFEGWLFEITTFRQEGEYRDHRHPSALKFVKSIESDLARRDFTINALAL 136
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
Q ++D GL DL+ ++ +GD R+ ED LRILR RF + G +++ A
Sbjct: 137 HPQKGLLDLYSGLEDLKKGVLRLVGDPTLRLQEDALRILRALRFSSVLGF-SLEEVTQKA 195
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ L+ ++ ERI E + G + + +++
Sbjct: 196 LWEQAPLLEHIAKERICME-------------FFKLLLGDFVRSCAPFQSLLEKTLKARL 242
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
E + ++ R + L D +++ + +++ L +
Sbjct: 243 KPLEGLENTPLNLRARLLYLAQSWDTQTLRDFCTRLKFSKKLTQSLHKLHAHFPLEPQEP 302
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
K + L F L+ + + +L + + G D
Sbjct: 303 SRLWIKTQLQSLYLGELRALLGFYQTQDPVLSARLKSELKDILHKREAYALRHLAIKGTD 362
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+++ G G +VG +L C + + + +E L ++
Sbjct: 363 LLELGFQ-GTQVGALLKACLEGVMCGAVCNEREALLQYAKE 402
>gi|302520496|ref|ZP_07272838.1| tRNA adenylyltransferase [Streptomyces sp. SPB78]
gi|302429391|gb|EFL01207.1| tRNA adenylyltransferase [Streptomyces sp. SPB78]
Length = 475
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 80/464 (17%), Positives = 161/464 (34%), Gaps = 61/464 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +VGG+VRD+L+ D+D T P+ V+ + V
Sbjct: 13 SPVADELARRFEEAGFTLALVGGSVRDALLGRLGNDLDFTTDARPEDVLALVRPWADAVW 72
Query: 72 PTSISYGTIK----IICRKK----YFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDF 122
I++GT+ ++ ++TT RS+ R +V + + D +RRDF
Sbjct: 73 EVGIAFGTVGCQKAARVGEEEQSFQIEVTTYRSEAYDRSSRKPQVSYGDSIEEDLVRRDF 132
Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T+NA+ + + +D GGL+DL + ++ G +D LR+LR RF A
Sbjct: 133 TVNAMAVFLPEKRFVDPHGGLDDLAAKVLRTPGTPEASFSDDPLRMLRAARFAAQLDF-E 191
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ + + A + + I+S+ER+ E+NKLL + +P+ + + + G+ + ++ +
Sbjct: 192 VAPEVVAAMTAMAERIDIVSAERVQGELNKLLLSAHPVKGLRLLVDTGLADRVLPELPAL 251
Query: 242 SLDQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------- 281
L+ L+ + +A + E D LR L+ K
Sbjct: 252 RLESDEHHRHKDVYEHSLTVLEQAIDLEEDGPDLTLRIAALLHDIGKPKTRRFEGDGRVS 311
Query: 282 ---------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDK 323
E+ + + E Y+
Sbjct: 312 FHHHEIVGAKLAKKRLAALKYSNELIRDVSRLIELHLRFHGYGTGEWTDSAVRRYVRDAG 371
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVKY 373
++ +L + + + + L G++++
Sbjct: 372 PLLTRLHKLTRSDCTTRNKRKANALARAYDGLERRIEELQEQEELDAIRPDLDGNEIMAL 431
Query: 374 -GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ PG +G + L +E L++ A+ Q
Sbjct: 432 LDVSPGPVIGKAYAFLLDLRMEKG-PLGKEAAGTALKEWWAAQQ 474
>gi|297616726|ref|YP_003701885.1| hypothetical protein Slip_0536 [Syntrophothermus lipocalidus DSM
12680]
gi|297144563|gb|ADI01320.1| CBS domain containing protein [Syntrophothermus lipocalidus DSM
12680]
Length = 879
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 81/418 (19%), Positives = 158/418 (37%), Gaps = 25/418 (5%)
Query: 15 LINILSLL----NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ ++L + +VGG VRD L+ + DID+ R ++
Sbjct: 462 IQSLLEIAGVVAEDLGFMVYMVGGIVRDLLLGVPNYDIDLVVEGEGLVFARALAQRLGGR 521
Query: 71 IPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ T ++ D+ T R++ VV + D RRDFTIN +
Sbjct: 522 ARVHERFQTAVVVLPDGFKIDVATARTEYYEFPAALPVVHRSSIREDLYRRDFTINTMAI 581
Query: 130 DQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-GEKNIDS 184
++IDY GG DL+ I+ + + +ED RILR RF Y + ++
Sbjct: 582 CLNPGRFGELIDYFGGRKDLKEGLIRIL--YNLSFVEDPTRILRAIRFEQRYKFQIEAET 639
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ----- 239
L ++ L LS +RI E+ +LE K+PL A+ M G+++ + +V+
Sbjct: 640 LRLARDAIDRRLLGKLSHKRILHELILILEEKDPLPALRRMDEIGVWEYVMPEVRLDSET 699
Query: 240 EISLDQLSQVIEAEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
I L ++ +V+ I ++ +V++ ++ + ++ R++ L+
Sbjct: 700 WIMLRRVPRVLGWLAERWLNIGLRSWVVYLLVILQKLPDSAVEEIVHRYRFDRDVTEILL 759
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ + + L ++ I L N +V +
Sbjct: 760 MGREVPGLAVEIEEIQSLSMSDLNKKLRKLSGEHIAFLLLCLNR----PESWERVARYLE 815
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ + G D+ G+ G IL ++ + E++ L++K I+
Sbjct: 816 LKQDVRVKVNGYDLKALGLREGPVYQKILSDLYDANLDGLVKTYDEEI-ELVKKWISE 872
>gi|257784302|ref|YP_003179519.1| metal dependent phosphohydrolase [Atopobium parvulum DSM 20469]
gi|257472809|gb|ACV50928.1| metal dependent phosphohydrolase [Atopobium parvulum DSM 20469]
Length = 492
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 93/442 (21%), Positives = 167/442 (37%), Gaps = 54/442 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L +L ++ IVGG VRD+L DIDI T + F V T
Sbjct: 42 ALRVLEVLENAGFEAWIVGGWVRDALRGSFAHDIDITTLATWQQSKAAFVAAGIPVHETG 101
Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132
I+YGT+ + + ++TT R D DGR V F + D RRDFTINA+ +
Sbjct: 102 IAYGTVTAVVEQHPIEVTTYRCDGEYLDGRRPDSVQFVSCIEKDLARRDFTINAMAYHPK 161
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D GG DL I+ +G+ R ED LR+LR RF + +++ A I+
Sbjct: 162 RGLLDLYGGQEDLSAHVIRSVGEPKARFTEDALRMLRALRFACRFSF-SVEEKTHQALIE 220
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVH-----------MYNGGIFKEIFLDVQEI 241
L ++SERI E+ +++E + +AI + F +
Sbjct: 221 CAPLLSQVASERIGLEVAQIVEGGHIAHAIKLGFSVLAVAIPELLLLQNFDQRSPYHAYD 280
Query: 242 SLDQLSQVIEAEQVFEW-KIDSLLRFIVLISWQDKKSILSM------------------- 281
L ++V A + F +LR+ L+ K + S+
Sbjct: 281 VLKHTARVCSATEAFTVGCATPILRWAALLHDIAKPEMFSVDADGRGHFYGHPEKGADVA 340
Query: 282 ---AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY-------GDKVMIAKLKI 331
K+ +LP+ + + + + ++ ++ + L G + L +
Sbjct: 341 KVLLKRLALPQRLINEICALVALHDYDVDVTTASLRHMVALLAEVSKSDGITLAYDLLTL 400
Query: 332 FLALHYNNLTHQD-----TCFILQVLSDIIHW----KKPLFPLTGDDVV-KYGIPPGKKV 381
A + +L + + ++G D++ I PG V
Sbjct: 401 KQADALAKAVPYRGYAVALERMFSLLKNEAKKGIAQRPQDLCISGADIMQALSITPGPIV 460
Query: 382 GNILVHCKQEWINSSFQLSQED 403
G + ++ + + +E+
Sbjct: 461 GAYQHKLFEAYLIGTVENRREE 482
>gi|303242318|ref|ZP_07328804.1| CBS domain containing protein [Acetivibrio cellulolyticus CD2]
gi|302590157|gb|EFL59919.1| CBS domain containing protein [Acetivibrio cellulolyticus CD2]
Length = 879
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 82/424 (19%), Positives = 149/424 (35%), Gaps = 27/424 (6%)
Query: 13 SDLINILSLLNK----GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
++ +L+L K +VGG VRD ++ + DIDI R F++T
Sbjct: 461 PNVREVLALAGKVADLEGFSIYVVGGFVRDLILGVENLDIDIVVEGDAIAFARKFAETSK 520
Query: 69 KVIPTSISYGTI-KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
V+ + T ++ DI T R + V K D RRDFTIN +
Sbjct: 521 AVLTEYEKFQTAYAVLAEDLKIDIVTARKEYYEFPGALPSVERGSIKDDLFRRDFTINCI 580
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGE-KNIDS 184
G+ + R I + +ED RILR RF YG + +
Sbjct: 581 AMKLNGREFGKIVDFYGGRRDLYDGIIRILYNFSFIEDPTRILRAVRFEQRYGFKMDEKT 640
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------ 238
+ L LS ERI SE +L+ KN + + M G+ ++I+ ++
Sbjct: 641 EEFAIDAINSDVLDKLSRERINSEFFYMLKEKNTVIMLERMQELGLLEKIYPEIMLSDRL 700
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
+ D+ + ++ + + LL + ++ + + R+
Sbjct: 701 KMLMEKSDKHYDEFYNSLINKKNIDKILVYLLVLYSDVCMENVPVLSDRFRLSKEYRDEI 760
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
+ ++ Y + + L + + + L VL
Sbjct: 761 LRFAKVRDLKLHEILNGGEPSNYEIYCMFKGLALESLYMLSLMFDDMLKGA-------VL 813
Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ +TG D+ + GI PG ++ IL +E IN E++ ++ L+
Sbjct: 814 LYANNLSNIKTKITGRDLQELGISPGPQIKKILEIVLKEKINGKIFTRSEEIDYVKINLL 873
Query: 413 ASSQ 416
+
Sbjct: 874 DEEK 877
>gi|154494462|ref|ZP_02033782.1| hypothetical protein PARMER_03817 [Parabacteroides merdae ATCC
43184]
gi|154085906|gb|EDN84951.1| hypothetical protein PARMER_03817 [Parabacteroides merdae ATCC
43184]
Length = 477
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 77/460 (16%), Positives = 160/460 (34%), Gaps = 59/460 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
I ++ ++ ++GG VRD ++ +DID+ + + ++ +
Sbjct: 12 ISAKPFHLISEAADELGVEAYVIGGYVRDIFLHRPSKDIDVVAIGSGIELAKAVARKLGR 71
Query: 70 --VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT ++ + R + T +V + D RRDFTINAL
Sbjct: 72 GAYLSVFKNFGTAQVKAGDLELEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTINAL 131
Query: 128 YADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
D GL D+ N I+ D +D LR++R RF + G ID
Sbjct: 132 ALCLNKDRYGELVDPFDGLTDMDNLLIRTPLDPDITFSDDPLRMMRAVRFASQLGFF-ID 190
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-- 241
D A + K+ + I+S ERI E+NK++ + P + G+ IF ++ +
Sbjct: 191 PDTFDAIERNKERISIISKERIVDELNKIVLSPKPSVGFDLLERCGLLPLIFPELCALKG 250
Query: 242 ---------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----- 287
+ ++ +++ + + LR+ L K + +
Sbjct: 251 VETKEGIGHKDNFAHTLMVLDRLSKTSDNLWLRWSALFHDIAKPATKRFDPRLGWTFHNH 310
Query: 288 ------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
E ++ + + LS E+ +
Sbjct: 311 NFIGEKMIPGIFRKMKLPMNEKMKYVQKMVSLHMRPIALSDDEVTDSAIRRLLFDAGDDI 370
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGI 375
+ L ++T ++ + + L++ + P+TG+++++ +G+
Sbjct: 371 DDLMKLCEADITSKNPEKVRRFLANFQKVRSKLADIEEKDRVRNFQPPVTGEEIMETFGL 430
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
PP + VG + K ++ E K+
Sbjct: 431 PPSQPVGVLKEAIKNAILDGVIPNEYEAAHTFMLQRAEKM 470
>gi|288929668|ref|ZP_06423512.1| polyA polymerase family protein [Prevotella sp. oral taxon 317 str.
F0108]
gi|288329173|gb|EFC67760.1| polyA polymerase family protein [Prevotella sp. oral taxon 317 str.
F0108]
Length = 490
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 75/448 (16%), Positives = 155/448 (34%), Gaps = 55/448 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + +VGG VRD + + DID+ +V K+ K I
Sbjct: 33 KIGDAADALGVPCYVVGGYVRDLFLERASNDIDVVVVGSGIQVADALRKSLGKKAHISVF 92
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
++GT ++ R + R + + +V + D RRDFTINA+ +
Sbjct: 93 RNFGTAQVKFRGYEIEFVGARKESYSHDSRKPIVENGTLEDDQNRRDFTINAMAVCLNAE 152
Query: 135 V----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
ID GL DL + I+ D +D LR+LR RF I+ + A
Sbjct: 153 NFGQLIDPFDGLYDLEDGIIRTPLDPDITFSDDPLRMLRCVRFATQLRFF-IEDETFDAL 211
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----------Q 239
+ + +KI+S ERI E+NK++ + P V ++ G+ + I ++ +
Sbjct: 212 TRNAERIKIVSGERIADELNKIMMTQQPSRGFVELHRCGLLQLILPELTRLDNVETRNGR 271
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSLPREI---- 291
+ + + + + + LR+ L+ K F +
Sbjct: 272 AHKNNFYHTLEVLDNICQHTDNLWLRWAALLHDVGKAKTKRWDPAAGWTFHNHNFVGAKM 331
Query: 292 ---------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
++ + + ++ + + + L
Sbjct: 332 VPDLFRRMKLPLDSKMKYVQKLVDLHMRPIVIAEDCVTDSAVRRLMNDAGDDTEDLMTLC 391
Query: 337 YNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY-GIPPGKKVG 382
++T ++ + L + ++ + G+++++ + P ++VG
Sbjct: 392 EADITSKNHIKKQRFLDNFRIVREKLADLKERDYKRLLQPVIDGNEIMELFHLGPSREVG 451
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ K +++ +E L LL +
Sbjct: 452 TLKQTLKDAVLDNRVPNEREPLMQLLMQ 479
>gi|125973202|ref|YP_001037112.1| polynucleotide adenylyltransferase region [Clostridium thermocellum
ATCC 27405]
gi|125713427|gb|ABN51919.1| Polynucleotide adenylyltransferase region [Clostridium thermocellum
ATCC 27405]
Length = 877
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 89/408 (21%), Positives = 166/408 (40%), Gaps = 21/408 (5%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79
+ + + +VGG VRD ++ + DIDI ++ + +GT
Sbjct: 472 KIADDVGLNAYVVGGFVRDLILGVENFDIDIVVEGDALMFSEKLAQHYQAHLTKHDRFGT 531
Query: 80 IKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----K 134
++ D+ T R + VV K D RRDFTIN++
Sbjct: 532 AVVVLEDDFKIDVVTARKEYYEYPASLPVVEGGTIKDDLFRRDFTINSMAIKLNKSGFGN 591
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
++D+ GG DL+ I+ + + +ED RI R RF Y K + A +
Sbjct: 592 IVDFYGGRRDLQMGLIRIL--YNLSFVEDPTRIFRAIRFEQRYDFKMEEKTEEFAIKAIE 649
Query: 195 KGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD---------VQEISLD 244
G+ +S ERI E +L+ N + M + I K ++ + + + + +
Sbjct: 650 SGILGKVSHERINFEFFAMLKENNIWAILKRMEDLRILKNVYPEVVLSEDLKKLLKNAEE 709
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
L+ + E V E +LL ++L S + + +++K L +E + ++ F N
Sbjct: 710 NLACLKEKVSVQESLDRTLLYLLILYSNMSFEKAVKLSEKMRLSKEYKSEILKFIEANDI 769
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
+ I Y +++ ++I L + + FI +V+ I + K
Sbjct: 770 ILSNLSGNIDISNYDVYNELKGLSMEILFVLCMLSNEKK---FIDRVILYINNLKNIKTC 826
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+TG D+ + G+ PG + +L E +N + Q ++L L+K+I
Sbjct: 827 VTGKDLKELGVKPGPEYAVLLDKVLAEKLNGNLQTYNDEL-EFLKKII 873
>gi|312131994|ref|YP_003999334.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Leadbetterella byssophila DSM 17132]
gi|311908540|gb|ADQ18981.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Leadbetterella byssophila DSM 17132]
Length = 479
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 76/459 (16%), Positives = 162/459 (35%), Gaps = 59/459 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ + S ++ +VGG VRD ++ + +DID + + K
Sbjct: 12 RNPIFEAVSSAAEDLGIQAYVVGGFVRDLILCRAGKDIDFVCVGSGIELAIATASKLGKH 71
Query: 71 I--PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
I T ++GT + + ++ R + +V + D RRDFTINA+
Sbjct: 72 ISVNTFKNFGTAQFVYDGYEYEFVGARRESYRSDSRKPIVEDGTLEEDQNRRDFTINAMA 131
Query: 129 ADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
K D GL D++ R I+ D +D LR++R RF + +I++
Sbjct: 132 LSLNKKDYGRLLDPFQGLEDIKRRLIRTPLDPETTFSDDPLRMMRAVRFASQLNF-DIET 190
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--- 241
+ + I+S ERI E+NK++ + P +Y G+ + IF ++ +
Sbjct: 191 ETFEGLKAMAPRISIISQERITDELNKIILSPKPSYGFKLLYQVGLLEIIFPELVNLLGV 250
Query: 242 --------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM-----AKKFSLP 288
+ + + D LR+ ++ K +
Sbjct: 251 ETMDGKGHKDNFYHTLQVLDNTAVRSNDLWLRWAAILHDIAKPATKRFSPKVGWTFHGHE 310
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AKLK 330
++ F + ++ L L+ + + ++
Sbjct: 311 ELGGRWVKGIFRKYKLPLDEKMRKVTTLVRLHLRPIALAKEGVSDSAVRRLLVEAGEYIE 370
Query: 331 IFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIP 376
+ L ++T +D + + L + + +TG+ +++ +G+
Sbjct: 371 DLMILCRADITSKDANRVRRYLKNFDKVEELLKEIEEKDKLRNFQPVITGEMIMEVFGLG 430
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQE----DLHHLLRKL 411
P K+VG I ++ ++ + + E L + +K+
Sbjct: 431 PSKEVGQIKTEVREAILDCRIENNMESAYPYLLEVGKKM 469
>gi|116748126|ref|YP_844813.1| polynucleotide adenylyltransferase region [Syntrophobacter
fumaroxidans MPOB]
gi|116697190|gb|ABK16378.1| Polynucleotide adenylyltransferase region [Syntrophobacter
fumaroxidans MPOB]
Length = 888
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 82/436 (18%), Positives = 151/436 (34%), Gaps = 39/436 (8%)
Query: 7 HKWFHDSDLINIL----------------SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDI 50
W +++ ++ L K+ VGG VRD L+ S DIDI
Sbjct: 444 AAWSKRKNVVAVIMEQLPREIVQTLKDFGKLAKDLGMKAYAVGGFVRDLLLRRSNLDIDI 503
Query: 51 ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVF 109
R +++ + T +I + D+ + R + +V
Sbjct: 504 VVEGDGIEFARTYAREHGIRCRFHKKFNTAVLIFPDDRRVDVASARFEYYQYPAALPIVE 563
Query: 110 TRDWKADSLRRDFTINALYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165
K D RRDFTIN L ++ID+ GG DL+++TI+ + + ++ED
Sbjct: 564 FSSLKMDLYRRDFTINTLALALNPGEFGQLIDFFGGQRDLKDKTIRVLH--NLSLVEDPT 621
Query: 166 RILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224
RILR RF +G + + L+ + L+ L R+ EI ++ +PL +
Sbjct: 622 RILRAIRFEQRFGFRIGKQTVALIRNAVRMGLLQKLGGRRLLHEIQLIMVEDDPLPPLRR 681
Query: 225 MYNGGIFKEI--------FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK 276
M ++ + L+ + L ++ + E + + L S
Sbjct: 682 MNEFAVWPVLSANILFDQKLEDLFVRLREVVSWHRLSFLDEPLERWWVYMLGLFSGLAAA 741
Query: 277 SILSMAKKFSLPREIRYFLISFFNC--NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
+ + R + + E K + + +F+
Sbjct: 742 DVEDACGRLQFTAGQRERIAWAYRTVSGLLWGFFPAAEHKPSAIFRALQPFKPEELVFMM 801
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
+ T + V ++ L G D+ + G+PPG IL +N
Sbjct: 802 AKAQDETPR-----RAVSHYFHRYRHVSTELKGRDLKEMGVPPGPIYRVILDELLDARLN 856
Query: 395 SSFQLSQEDLHHLLRK 410
+ QE+L +L +
Sbjct: 857 GEVKDRQEELAYLRER 872
>gi|317509432|ref|ZP_07967050.1| tRNA adenylyltransferase [Segniliparus rugosus ATCC BAA-974]
gi|316252261|gb|EFV11713.1| tRNA adenylyltransferase [Segniliparus rugosus ATCC BAA-974]
Length = 487
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 84/450 (18%), Positives = 166/450 (36%), Gaps = 59/450 (13%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76
+ +VGG+VRD+++ D+D T P++ ++ ++ I+
Sbjct: 37 ALAGRFVAAGHALYLVGGSVRDAVLGRLGDDLDFTTDAKPEQTQKLLRGWADELWDVGIA 96
Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQ 131
+GT+ + +ITT R+D R V F D + D +RRDF +NA+
Sbjct: 97 FGTVGAVKDGHKLEITTYRTDSYDQRSRNPVVAFGTDLRGDLVRRDFRMNAMAVSLTEQG 156
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G+ +D +GGL+D+ I +D LR+LR RF A G ++A
Sbjct: 157 CGEFVDPLGGLDDVLAGKIDTPDSPEISFGDDPLRMLRAARFAAQLGF-TWSPRVVLAVE 215
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-------- 243
K ++ +++ERI +E+ KLL ++ + + H+ + G+ + + ++ ++ L
Sbjct: 216 KMAGEIQRITAERIGAELEKLLVGEHAVEGLEHLVDSGLAEYVLPELPQLQLAVDAAHHH 275
Query: 244 -----DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------------- 281
L+ + A + D +LR+ L+ K +
Sbjct: 276 KDVYRHSLAVLGNAMALEPGDPDPVLRWAALLHDIGKPATRRFEPGGAVSFHHHEVVGAK 335
Query: 282 -----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
+ + P+ + + L L
Sbjct: 336 LARKRLRALTFPKHFVEDVSKLVFLHMRFYGYGDQAWTDSAVRRYAVDAGELLPKLHLLV 395
Query: 337 YNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
+ T ++ Q+ +S+ K L G+ +++ GI PG++VG
Sbjct: 396 RADCTTRNQRRSRQLASAYDRFEERIAKISEAEDLAKVRPDLDGNAIMEILGIGPGREVG 455
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ K+ + L ++ RKL+
Sbjct: 456 EAWKYLKELRLEQG-PLEADEAE---RKLL 481
>gi|281417401|ref|ZP_06248421.1| CBS domain containing protein [Clostridium thermocellum JW20]
gi|281408803|gb|EFB39061.1| CBS domain containing protein [Clostridium thermocellum JW20]
Length = 877
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 88/408 (21%), Positives = 165/408 (40%), Gaps = 21/408 (5%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79
+ + + +VGG VRD ++ + DIDI ++ + +GT
Sbjct: 472 KIADDVGLNAYVVGGFVRDLILGVENFDIDIVVEGDALMFSEKLAQHYQAHLTKHDRFGT 531
Query: 80 IKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----K 134
++ D+ T R + VV K D RRDFTIN++
Sbjct: 532 AVVVLEDDFKIDVVTARKEYYEYPASLPVVEGGTIKDDLFRRDFTINSMAIKLNKSGFGN 591
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
++D+ GG DL+ I+ + + +ED RI R RF Y K + A +
Sbjct: 592 IVDFYGGRRDLQMGLIRIL--YNLSFVEDPTRIFRAIRFEQRYDFKMEEKTEEFAIKAIE 649
Query: 195 KGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD---------VQEISLD 244
G+ +S ERI E +L+ N + M + I K ++ + + + + +
Sbjct: 650 SGILGKVSHERINFEFFAMLKENNIWAILKRMEDLRILKNVYPEVVLSEDLKKLLKNAEE 709
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
L+ + E V E +LL ++L S + + +++K L +E + ++ F
Sbjct: 710 NLACLKEKVSVQESLDRTLLYLLILYSNMSFEKAVKLSEKMRLSKEYKSEILKFIEAKDI 769
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
+ I Y +++ ++I L + + FI +V+ I + K
Sbjct: 770 ILSNLSGNIDISNYDVYNELKGLSMEILFVLCMLSNEKK---FIDRVILYINNLKNIKTC 826
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+TG D+ + G+ PG + +L E +N + Q ++L L+K+I
Sbjct: 827 VTGKDLKELGVKPGPEYAVLLDKVLAEKLNGNLQTYNDEL-EFLKKII 873
>gi|239948431|ref|ZP_04700184.1| poly(A) polymerase [Rickettsia endosymbiont of Ixodes scapularis]
gi|239922707|gb|EER22731.1| poly(A) polymerase [Rickettsia endosymbiont of Ixodes scapularis]
Length = 436
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 129/449 (28%), Positives = 191/449 (42%), Gaps = 72/449 (16%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMN--------------------------- 42
ILSLLN+ ++ ++GG VRD+L++
Sbjct: 10 IPSKGYRKILSLLNEKG-QARLIGGCVRDALLDLLHNEANKEEFEGDTERRTAAYIDVRE 68
Query: 43 ----------------------LSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
DIDIAT ++P V I S + K IPT + +GTI
Sbjct: 69 DSSTGSTYKLPLEASYPRDLLEKDSYDIDIATNLIPSEVTNILSGAKIKTIPTGLKFGTI 128
Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYV 139
I + F+ITTLR D+ +GR+AKVVFT D+ D+ RRDFTINAL ++ DY
Sbjct: 129 TAILNNEKFEITTLRKDIECNGRHAKVVFTNDFAEDAARRDFTINALSYCPFKNEIYDYF 188
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199
G DL+ + FIG+A RI EDYLRILRFFRF ++Y + +D A K GLK
Sbjct: 189 EGFKDLQQEKVVFIGEALDRIKEDYLRILRFFRFSSYYANQ-LDDGSFKACKALKDGLKT 247
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
LS ERI SE++K++ +K + M+ GI + IF +Q + Q + + +
Sbjct: 248 LSRERIKSEMDKIIVSKRAAQILKAMFEIGILELIF-SIQNYEIKFFEQANDFKLELATR 306
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
LL ++ L + + R ++S N K K
Sbjct: 307 YALLLYCQKDLN-------LKVFLDWKFSRHEAMQILSITNFLNEAKFNIKKIWFKKKNY 359
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379
K + A L H + ++ P F + G+D++ I K
Sbjct: 360 --------KEYLLAASIIGKLNHSQAKEFILKYDALLR---PKFQVNGNDLLNMNIEK-K 407
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++G L + K WI F+ S+ +L L
Sbjct: 408 EIGAKLEYLKNFWIEQDFKPSKLELLDKL 436
>gi|172057791|ref|YP_001814251.1| polynucleotide adenylyltransferase region [Exiguobacterium
sibiricum 255-15]
gi|171990312|gb|ACB61234.1| Polynucleotide adenylyltransferase region [Exiguobacterium
sibiricum 255-15]
Length = 379
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 82/404 (20%), Positives = 137/404 (33%), Gaps = 37/404 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I+ + ++ IVGGAVRD L+ D D+AT++LP+ VM +F VIP
Sbjct: 3 ESANQIIQTIEAAGGEAYIVGGAVRDMLLKREPGDYDLATSLLPEAVMHLFP----VVIP 58
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFT--RDWKADSLRRDFTINALYAD 130
T + +GT+ ++ F++TT RS+ R T + D RRDFTINA+
Sbjct: 59 TGLDHGTVTVVLDHVPFEVTTFRSESTYSDRRRPDEVTLGVSLEEDLTRRDFTINAMALK 118
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++D GG DL + ++ +G A R ED LR++R FRF +
Sbjct: 119 P-TGLVDLFGGQADLATKVVRTVGRAEDRFDEDALRMIRAFRFMSQLEFTLDPETERAIE 177
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K + + KLL A+ M GI + ++ L QL
Sbjct: 178 NKKQHLSSVAVERIAIE-FEKLLLGPGRKAALAAMRRTGIGHY-MPHMNDVILHQL---- 231
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
LL F + +L R + +
Sbjct: 232 -----------MLLPFNGVSPDDVWTLVLVAGLHPESLRAWKRSKKQEGRAKTFAPLVHE 280
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ + L + + + G D+
Sbjct: 281 QTLSDWQRYRLSDEELDHLNQMTGYRHEGRASLPIRRLQD------------LTVNGRDM 328
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ G+ ++ L H +Q+ ++ +E L +
Sbjct: 329 MDLGLRKH-QIKEALHHLEQQVVHRQLDNEREILLKEVMNWKNQ 371
>gi|118581706|ref|YP_902956.1| polynucleotide adenylyltransferase protein [Pelobacter propionicus
DSM 2379]
gi|118504416|gb|ABL00899.1| Polynucleotide adenylyltransferase region [Pelobacter propionicus
DSM 2379]
Length = 881
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 69/425 (16%), Positives = 138/425 (32%), Gaps = 30/425 (7%)
Query: 14 DLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
I +L L + D+ VGG VRD L+ + D+D+ F++ +
Sbjct: 463 ATIRLLRDLGRTGDELGLPVYAVGGFVRDLLLGVENLDLDLTVEGDGIFFAERFARAKGG 522
Query: 70 VIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + ++GT ++ D+ + R + V + D RRDFTIN L
Sbjct: 523 RVRSHPAFGTAVVVLSDGSKLDVASTRLEYYESPGVLPTVERSSLRHDLYRRDFTINTLA 582
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
V + + + +ED R+ R RF +
Sbjct: 583 ICINSDRFGMVTDFFGGQQDIQQRTVRVLHNLSFVEDPTRVFRAIRFEQRLAFRIAPHTE 642
Query: 187 LVASIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ------ 239
+ K L + R+++E+ +L + PL A+ M G+ I ++
Sbjct: 643 NLIRSALRMKVLDRVGGIRLFNELVLILNEQEPLGAVRRMAMLGLLPFIHPQLRLSPETE 702
Query: 240 --EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP-------RE 290
+L + + + F+ L ++ S+P
Sbjct: 703 RAMTESSRLLTWFRLLYLNDPCQQWQVYFLALCERLRDDEFQEACRRLSMPGRFVSQVFA 762
Query: 291 IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
R+ + + + Y + + L A N+ + +
Sbjct: 763 HRHRALVMLETLQRRLKRAQDLRNSEIYDSFHGLPLEILLYLAARTKNDQVRRLVSLYIT 822
Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
L + L G+ + + G+ PG I+ +++ ++E+ L R+
Sbjct: 823 RLRHMRRE------LDGNALKELGLAPGPNYSRIMKRLLDARLDAEVGTAEEE-RTLARE 875
Query: 411 LIASS 415
LIA +
Sbjct: 876 LIADA 880
>gi|254302647|ref|ZP_04970005.1| tRNA adenylyltransferase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322839|gb|EDK88089.1| tRNA adenylyltransferase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 451
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 97/439 (22%), Positives = 179/439 (40%), Gaps = 49/439 (11%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I IL+ LNK K IVGGA+RD L+ L +DID T + + + +F + K T
Sbjct: 14 IEILNKLNKYG-KGYIVGGAIRDILLGLEPKDIDFTTNLPYETLKDLFKECNPK--ETGK 70
Query: 76 SYGTIKIICRKKYFDITTLRSD-------LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
S+G ++I ++I R D + KV F D K D RRDFTINA+
Sbjct: 71 SFGVLRIRVNNIDYEIAKFREDNYEEKDGMKIIPEEKKVSFVDDIKNDLARRDFTINAMA 130
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
++ +++D G D+ N+ I F+G+A RI+ED LR+LR FRF + ++ + +
Sbjct: 131 YNETEEIVDLYNGQKDIENKVINFVGNAEERIIEDPLRVLRAFRFMSRLNF-SLSENTIE 189
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K K LK + ERI E +KLL +N N + M + G+ + I + + +
Sbjct: 190 AIKKQKYLLKNIPEERITMEFSKLLLGENIKNTLTLMKDTGVLELIIPEFKATYDFEQYN 249
Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQ----------------------DKKSI 278
+F D L++ L+
Sbjct: 250 PHHNLDLFNHIISVVSKVPADLELKYSALLHDIAKPIVQTFDEKGIAHYKTHEIVGADMA 309
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ + LP ++ + + + ++ + KL G + ++ A +
Sbjct: 310 RDILTRLKLPVKLIDTVAEIIKKHMILYRDVTDKKFNKLLSEMGYDNLWRLIEHSNADNG 369
Query: 338 NNLTH------QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
+ + + + + + G D+++ G G ++G I +
Sbjct: 370 SKNNEVVNTENDLHERLKRAVEKQMQITVNDLAINGKDLIELGFI-GTEIGQIKKELLDK 428
Query: 392 WINSSFQLSQEDLHHLLRK 410
+++ Q +E++ + +++
Sbjct: 429 YLSEELQNEKEEMLNYVKE 447
>gi|317010861|gb|ADU84608.1| putative polynucleotide adenylyltransferase; putative poly(A)
polymerase [Helicobacter pylori SouthAfrica7]
Length = 576
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 82/403 (20%), Positives = 143/403 (35%), Gaps = 22/403 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + +L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R I R ++VF+ D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNHQSYEITTFRVEKGHIKHRRPKELVFSTHLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N + N+ I +GDA R ED LRILR RF A G K
Sbjct: 122 IAYSPTKGLIDPFKGQNAIENQVIACVGDARLRFFEDALRILRALRFSATLGFK------ 175
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + ++ + + L
Sbjct: 176 -------IAASTKKAVFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVIQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + ++ LR + P++ C+
Sbjct: 229 EKIENLGFLKNAPLNLELR------LLGFFKHQKSLENLRYPKKTCVLFSKAKECHQAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ +KK L
Sbjct: 283 NIHNKTELKFLLKDYDLEPFNLALDFYALENPKHALKIKRLLKEIFDSNEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +K+G IL C I + S E L +
Sbjct: 343 GGALQSLGYQH-QKIGEILNACLDLVIANPKHNSLEFLIEWAK 384
>gi|325104976|ref|YP_004274630.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pedobacter saltans DSM 12145]
gi|324973824|gb|ADY52808.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pedobacter saltans DSM 12145]
Length = 470
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 77/454 (16%), Positives = 160/454 (35%), Gaps = 53/454 (11%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
I L NK ++ ++GG VRD + +D+DI K +
Sbjct: 5 LKHPIFNIISELSNKLGIETYVIGGFVRDIFLKRPSKDVDILVIGNGPEFALEVGKKLHT 64
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ ++GT + + + R + +V + D RRDFTINA+
Sbjct: 65 NVSVFKNFGTAMLRYQDLEVEFVGARKESYRTNSRKPIVENGTLEDDQKRRDFTINAMAI 124
Query: 130 ----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ G++ID G+ DL+ I DA+ +D LR++R RF + S
Sbjct: 125 SLSKNNYGQLIDPFNGVKDLKENLIITPLDANETFSDDPLRMMRAIRFATQLNFQIHQSA 184
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---- 241
++ +KI+S ERI E+NK++ +K P ++++ + IF + ++
Sbjct: 185 IDAIVFNKER-IKIVSKERITDELNKIILSKKPSIGFKYLFDTKLLHIIFPQMAKLYGID 243
Query: 242 -------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP------ 288
+ + + + + D LR+ ++ K + KK
Sbjct: 244 YIDGKGHKDNFYHTLQVLDNLSQNTDDLWLRWAAILHDIAKPATKRFEKKHGWTFHGHED 303
Query: 289 -----------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
E ++ + L+ I +
Sbjct: 304 KGARMVPKIFAELKLPLNEKMKYVQKLVLLHLRPIVLAKEIITDSAVRRLLFEAGDDIDD 363
Query: 332 FLALHYNNLTHQDTCFILQVLSDII-------------HWKKPLFPLTGDDVVK-YGIPP 377
+ L ++T ++ + + ++ + P++GDD++K + I
Sbjct: 364 LMLLCQADITTKNEYKVKKYRNNFELVKQKLKDVEEKDKIRNWQPPISGDDIIKAFNIKA 423
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
G +VG I ++ + + + + L++ +
Sbjct: 424 GPEVGIIKNKIREAILEGDIKNDRAEAFDLMKAI 457
>gi|255036177|ref|YP_003086798.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dyadobacter fermentans DSM 18053]
gi|254948933|gb|ACT93633.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dyadobacter fermentans DSM 18053]
Length = 471
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 82/444 (18%), Positives = 163/444 (36%), Gaps = 55/444 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--V 70
L + + + ++ I+GG VRD ++ + +DIDI + + + +
Sbjct: 11 PVLEKVAAAAKELGVEAYIIGGFVRDLILKRNSKDIDIVSIGSGIELAEMVAGRLGPDVF 70
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ ++GT +I + R + V D RRDFTINA+
Sbjct: 71 VSVFKNFGTAQIRQGDLEIEFVGARKESYRSESRKPAVEDGTLADDQNRRDFTINAMGIS 130
Query: 131 QQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
G+++D G++DLR + I+ D +D LR++R RF + +I+ D
Sbjct: 131 LNAGTFGELVDPFEGMSDLRKKIIRTPLDPEITFSDDPLRMMRAIRFASQLNF-DIEPDT 189
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----- 241
A +K K + I+S ERI E+NK++ +K P +Y+ G+ IF ++ E+
Sbjct: 190 FDAIVKMKDRISIVSMERISDELNKIIRSKTPSYGFKLLYHAGLLAIIFPEMVELQGVEH 249
Query: 242 ------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP------- 288
+ + + V + D LR+ ++ K + K+
Sbjct: 250 IEGKGHKDNFYHTLQVLDNVAQVSDDLWLRWAAILHDIAKPATKKFDKRHGWSFHNHEEV 309
Query: 289 ----------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
E F+ + LS EI ++
Sbjct: 310 GARMVPVIFRRMKLPLNEKMRFVKKLVRLHLRPIVLSKEEITDSAMRRLLVEAGEDIEAL 369
Query: 333 LALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK-YGIPPG 378
+ L ++T ++ + + L + + +TG+ +++ +G+ P
Sbjct: 370 MNLCRADITSKNPEKVRRFISNFDLVEQKLKDLEERDKLRNFQPVITGEMIMEAFGLKPA 429
Query: 379 KKVGNILVHCKQEWINSSFQLSQE 402
++VG I ++ + E
Sbjct: 430 REVGVIKEAIREAILEGIVPNEYE 453
>gi|210134846|ref|YP_002301285.1| poly(A) polymerase [Helicobacter pylori P12]
gi|210132814|gb|ACJ07805.1| poly(A) polymerase [Helicobacter pylori P12]
Length = 402
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 82/403 (20%), Positives = 145/403 (35%), Gaps = 25/403 (6%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + +L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEKELKELFDVYEKSPYELYLVGGCVRDYLMGITPKDYDLTSNALVNESKELLLKCHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--ADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + + D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N +RN+ I+ +G A R ED LRILR RF A G K S
Sbjct: 122 IAYSPTKGLIDPFKGQNAIRNQVIECVGGARLRFFEDALRILRVLRFSATLGFKIAPSTK 181
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + + G E+ + QEI
Sbjct: 182 EAVFACKDLLKHLSKERLQSE--------------LNKLLMGKNAYEVAKEYQEI----- 222
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+++ E++ F + + + P++ + C+
Sbjct: 223 LELVIQEKIENLGFFKNAPFNLELRLLGFFKHQKSLENLRYPKKTCVLFLKAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL T + + ++ + +KK L
Sbjct: 283 NIHNKTELKFLLKNYDLEPFNLALEFYALKNPKRTLKIKSLLKEIFNANEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +K+G IL C + I + L L++
Sbjct: 343 GSALQNLGYQH-QKIGEILNACLKLVIENPKNN---ALEWLIK 381
>gi|322419451|ref|YP_004198674.1| polunucleotide adenylyltransferase region [Geobacter sp. M18]
gi|320125838|gb|ADW13398.1| Polynucleotide adenylyltransferase region [Geobacter sp. M18]
Length = 873
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 76/420 (18%), Positives = 142/420 (33%), Gaps = 34/420 (8%)
Query: 17 NILSLLNKGED----KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL L + D + VGG VRD L+ D+D+ F+ +
Sbjct: 461 EILHNLGRVGDSLDLQVYAVGGFVRDLLLGQENADVDVTVDGDGILFAETFAAEFDCRVK 520
Query: 73 TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+ +GT I+ D+ + R + V K D RRDFT+N L
Sbjct: 521 SHEKFGTAVIVFPDGFKVDVASTRLEYYVSPAALPTVERSSLKMDLYRRDFTVNTLAISL 580
Query: 132 QG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
K+IDY G DL+ R I+ + + +ED R+ R RF K
Sbjct: 581 NSQSFGKLIDYFGAYRDLQARVIRVLH--NLSFVEDPTRVFRAIRFEQRLNFKIAKHTED 638
Query: 188 VASIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-----EI 241
+ L L R+ SE+ ++L K PL I M + G+ + I +++ ++
Sbjct: 639 LIKNAVKMDFLVKLGGRRLLSELVQILMEKEPLKGIGRMASLGLLRFIHPNIELTAQLQV 698
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+L+++ V+ + + + ++ + S + ++
Sbjct: 699 TLEEVRYVVSWYDLLYLERPYERWAVYFLTLCEVLSAEQFWATCTRLAVTEHYKEHLAEM 758
Query: 302 NF----------NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ T Y + + L +A N +
Sbjct: 759 RHLGEELVGAMERKLTRQERLENSEIYFTLRGLPVEILLYHMAKSGNPEIKRCISL---- 814
Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+ G+D+ + GI PG +L +N ++++ L+R++
Sbjct: 815 --YFTKLHSMHTLIGGEDLKELGIKPGPLYRELLDAVLSARMNGKVSSKEDEI-ELVREM 871
>gi|327405856|ref|YP_004346694.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Fluviicola taffensis DSM 16823]
gi|327321364|gb|AEA45856.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Fluviicola taffensis DSM 16823]
Length = 474
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 73/456 (16%), Positives = 157/456 (34%), Gaps = 58/456 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRY 68
+ ++++ ++ ++GG VRD L+ +DIDI + + K R
Sbjct: 10 LKHPVFKVVSQIISEKGLEAYVIGGFVRDLLLERPSKDIDIVVVGNGMELAQAAGDKLRV 69
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
K + ++GT + + + R + +V D RRDFTINAL
Sbjct: 70 KRVNLFKNFGTAQFNYKDLDVEFVGARKESYQRDSRKPIVEDGTLSDDQKRRDFTINALA 129
Query: 129 AD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
D G +ID GL DL ++ D + +D LR++R RF + I+
Sbjct: 130 LDLRAESFGNLIDPFNGLADLEKGILRTPLDPNTTYSDDPLRMMRAIRFATQLDFQ-IEI 188
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------ 238
L + ++ L+I+S ERI E+NK++ A+ P + + + + F ++
Sbjct: 189 SSLKSILENSSRLEIISQERIVDELNKIILAEKPSRGFELLNSTKLLHQFFPEMIALHGT 248
Query: 239 -----QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE--- 290
+ + + + V + + LR+ ++ K +
Sbjct: 249 ETRDGKSHKDNFYHTLEVLDNVAQHSDNLWLRWGAILHDIAKPPTKRFDSQVGWTFHGHE 308
Query: 291 --------------------IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330
++ + +L + +
Sbjct: 309 ELGARMVPKIFTRLRLPLDAKMKYVQKLVRLHLRPISLVKSNVTDSAIRRLLFEAGDDID 368
Query: 331 IFLALHYNNLTHQDTCFILQVLSDII-------------HWKKPLFPLTGDDVVK-YGIP 376
+ L ++T ++ + + + H + P++GD ++K + +
Sbjct: 369 DLMTLCNADITSKNEFKVKKYKKNFELVIEKLKAVEEKDHVRNFQPPISGDLIMKTFNLK 428
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
P ++G I K+ + + ++L+
Sbjct: 429 PCGEIGIIKAKIKEAILEGEIPND----FEIAKELM 460
>gi|289522442|ref|ZP_06439296.1| polyA polymerase family protein [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289504278|gb|EFD25442.1| polyA polymerase family protein [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 876
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 77/420 (18%), Positives = 155/420 (36%), Gaps = 27/420 (6%)
Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66
W + L + + K+ +VGG VRD L+ QD+DI ++ +
Sbjct: 457 SPWITQT-LRRLGRRAEEMSLKAYVVGGFVRDLLLGKENQDLDIVIEGDALSFIKSWEAD 515
Query: 67 RYKVIPTSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + Y T I+ + D+ T R + V K D RRDFT+N
Sbjct: 516 GCR-VAVHERYRTGTIVFPGGRKIDVATARREFYEYPVALPKVVGDSLKHDLYRRDFTVN 574
Query: 126 ALYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
++ G +IDY GG DL+ R ++ + + +ED R+LR R G +
Sbjct: 575 SMAISINGTSWGTLIDYFGGRRDLQKRQLRVLH--NLSFVEDPTRVLRGLRLKHRLGFEF 632
Query: 182 IDSDGLVASIKAKK-GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ- 239
D+ + K L +LS R+ +E+ + + ++ M + GIF+ +F ++
Sbjct: 633 EDNTVRLIKSAIKGGLLALLSGTRVKNELKLIFLEERAYPIVLEMVHLGIFEALFPGIKI 692
Query: 240 -EISLDQLSQVIEAEQVFEWKID------SLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
L + ++ + + + L ++ + + K L + R
Sbjct: 693 DRNCLRVIRRLSFFLRRIHYDLPDMGDKVWLAFLAAVLFSSAEWVQEATIDKLHLSKPDR 752
Query: 293 YFLISFFNCN---FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
+ N N + + Y + + V + A +
Sbjct: 753 EAVERALNDLGTAENAVGGRVIRSHEEIYFFLEDVPYVTALFWAAA------TEQWRVRR 806
Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
++L + + L G D+++ G P G +G IL + + + ++++ + +
Sbjct: 807 RILLFLTRLHRIHPILMGRDLIELGYPKGALIGKILDELLRARLRGEVETREDEIRWIKK 866
>gi|269120810|ref|YP_003308987.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Sebaldella termitidis ATCC 33386]
gi|268614688|gb|ACZ09056.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Sebaldella termitidis ATCC 33386]
Length = 583
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 100/448 (22%), Positives = 189/448 (42%), Gaps = 45/448 (10%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ ++D+ IL +LNK + IVGG+VRD L+ +S +D D T I + +F
Sbjct: 3 FELNNDVEFILDILNKNG-EGYIVGGSVRDILLGVSPKDYDFTTNIAYSTLKELFKDYNP 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAK-VVFTRDWKADSLRRDFTINA 126
K +G + I +++I R D+ +GR+ + V F + D RRDFTINA
Sbjct: 62 K--EIGKHFGILMIKINGIHYEIAKFRKDIGILNGRHPESVKFVDEIAEDLKRRDFTINA 119
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++ +ID G +D++N+ I+F+GD RI ED LRILR RF + G +++++
Sbjct: 120 MAYSRKNGLIDLYNGSSDIKNKLIRFVGDPGLRIKEDALRILRAVRFVSALGF-DLETET 178
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A +K K LK +S ERI E +K+L + ++ M GI + I +++ +
Sbjct: 179 KKAILKNKLQLKKISKERIREEFSKILLSDYVDKGLLLMKELGILEIIIPEIEMLYEFNQ 238
Query: 247 SQVIEAEQVFEWKI--------DSLLRFIVLISWQDKKSILSM----------------- 281
+ + VF + D L R L K + S+
Sbjct: 239 NNPHHHKDVFAHTVSVVKNTQKDLLTRITALFHDIGKPNTHSIDKNGISHYYGHENNSAE 298
Query: 282 -----AKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335
++ P + + + + IKK G + + F A
Sbjct: 299 IASAALRRLKFPNDFIRDVDVLIRNHMIIFEKPGAKAIKKFICKVGIENLDKIFDHFYAD 358
Query: 336 HYNNLTHQDTCFI-------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
+ D I +++ + +K + G+D++ I K++ I
Sbjct: 359 MSSKKPPVDYSLIDSLKSKVDEIIDKNENIEKQDLEINGNDMLALKIQQ-KQISKIKNEI 417
Query: 389 KQEWINSSFQLSQEDLHHLLRKLIASSQ 416
++ ++ + + +++D+ + + ++
Sbjct: 418 YEKVLDGNLENNKKDIVNYIMNTKGINE 445
>gi|162447078|ref|YP_001620210.1| poly(A) polymerase family protein [Acholeplasma laidlawii PG-8A]
gi|161985185|gb|ABX80834.1| poly(A) polymerase family protein [Acholeplasma laidlawii PG-8A]
Length = 382
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 98/399 (24%), Positives = 166/399 (41%), Gaps = 28/399 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
N++ L K ++ +VGG VRD LM DIDI T+ P VM+ F K +P
Sbjct: 4 KSAKNLIRDLKKHGYQAYLVGGVVRDFLMKAKFSDIDITTSAKPYEVMKHF-----KAVP 58
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAK-VVFTRDWKADSLRRDFTINALYAD 130
T I YGTI I+ F++TT R+D T R+ V+++ + D +RRDFT+N + D
Sbjct: 59 TGIKYGTITIMYDNVSFEVTTFRTDGPTSDFRHPDSVIYSDNVNDDVMRRDFTMNGILMD 118
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ + DYVGG D+ ++ I+ IGD + R ED LR+LR F F + G I+ A
Sbjct: 119 EYQNIYDYVGGQRDIEHKIIRAIGDPNERFKEDALRMLRAFYFQSKLGF-EIEPVTKQAI 177
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+K L+ ERI +E+ K+L+ K+ A+ M GI K + + I I
Sbjct: 178 QDNAHLIKELAMERIHAELIKILKGKHLKTALNSMIETGIHKVLPGLEKGI--------I 229
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ E + + + ++ + T
Sbjct: 230 HTANLEEMPFIDTFFALSFTLNNGFIPAKWTFSNRHRHKYQKASELALMHPTTIPDT--- 286
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
Y YG ++ + K+ L + +Q + + +++ + LT ++
Sbjct: 287 -----ALYHYGLEISLLANKVNFNLGKQSYQNQS---LQERFNNLPLKSELDLALTSQEI 338
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G +G + H + ++E L +
Sbjct: 339 MNIVNKKAGAWLGKLKAHMIDHILEKKLSNNKEALTSFV 377
>gi|327440755|dbj|BAK17120.1| tRNA nucleotidyltransferase/poly(A) polymerase [Solibacillus
silvestris StLB046]
Length = 395
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 85/408 (20%), Positives = 164/408 (40%), Gaps = 29/408 (7%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
++ +W ++ + ++ IVGGAVRD + D+DIAT+ +P+ + I
Sbjct: 6 RMIPQQW---QAAKEVIKKIEHAGFEAFIVGGAVRDYYLKKENNDVDIATSAMPEEIQTI 62
Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRR 120
FS+ I I++GT+ ++ + ++TT R++ R V F R+ + D RR
Sbjct: 63 FSQ----TIDVGIAHGTVIVLDCGEPIEVTTYRTESTYSDHRRPDTVEFVRNLQEDLKRR 118
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
DFT+NA+ Q G+ IDY G + ++ I +G+ R ED LR+LR RF A
Sbjct: 119 DFTMNAMALSQSGEYIDYYNGRQHIDSKVICAVGEPDQRFEEDALRMLRAVRFAAQL-HF 177
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+ + A K ++ ++ ERI E++K+ + + I +M + + +
Sbjct: 178 SIEENTFEAIRKKAASIEYVAIERIQVELSKIFISAHASFGIDYMEKTTLGDYLHGNFTA 237
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+ ++ W L+ S LS+ K+ + + F+ +
Sbjct: 238 SNWT---HYYSEDRQVGWAYFCLV----------NGSDLSLLTKYRCSNKDKLFVKTVLA 284
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
S+ L L ++ K + N ++ + +
Sbjct: 285 AYE-----SLRNGMSLVDLLSYDTIVLKTSFQFTIWQNCKLELSYEELVARKNGLPIQHV 339
Query: 361 PLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+TG D++ + G + L + +N Q ++ L
Sbjct: 340 NELAITGKDLLDWSSKKRGSWIKQTLNAAVEAVLNEEVQNDKQQLKEW 387
>gi|25029484|ref|NP_739538.1| putative tRNA nucleotidyltransferase [Corynebacterium efficiens
YS-314]
gi|259508336|ref|ZP_05751236.1| polyA polymerase [Corynebacterium efficiens YS-314]
gi|23494773|dbj|BAC19738.1| putative tRNA nucleotidyltransferase [Corynebacterium efficiens
YS-314]
gi|259164070|gb|EEW48624.1| polyA polymerase [Corynebacterium efficiens YS-314]
Length = 489
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 81/450 (18%), Positives = 158/450 (35%), Gaps = 54/450 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
L + + + +VGG+VRD+ + D+D T+ P+ I V
Sbjct: 32 SPILTPLAAAFTEQGHSLYLVGGSVRDAFLGTLGNDLDFTTSAPPEITRAILDDYAEVVW 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T I++GT+ + +ITT RSD R +V F D +RRDF +NA+ +
Sbjct: 92 DTGIAFGTLSAEKHGQQIEITTFRSDVYDGTSRNPEVTFGDTLDGDLIRRDFKVNAMAVE 151
Query: 131 Q----QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
D VGGL+DL +R + +D LR+LR RF + G +
Sbjct: 152 IAGDGTLSFHDPVGGLDDLLHRRLDTPAAPEQSFNDDPLRMLRAARFVSQLGF-TVADCV 210
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ A + + +++ER+ E++KL+ +P I M + GI + IF ++ + + Q
Sbjct: 211 VTAMTEMAGQISRITAERVQVELDKLMLGAHPEEGIDLMVDTGIAEVIFPEIPAMQMTQD 270
Query: 247 SQVIEAE------------QVFEWKIDSLLRFIVLISWQDKKS----------------- 277
+ + E + D +LR+ L+ K
Sbjct: 271 EHMQHKDVYRHSLQVMRQSIDQETEPDLVLRWAALLHDCGKPDTREFNEDGRVSFHQHEV 330
Query: 278 -----ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKL 329
+ +K +++ + + + Y+ ++ +L
Sbjct: 331 VGAKLVRRRMRKLKYSKQMVNDVSQLVFLHMRFHGFGEGQWTDSAVRRYVADAGELLPRL 390
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPG 378
+ + + + + L G+++++ IP G
Sbjct: 391 HKLVRADCTTRNKRKAQRLQATYDHLEERIADIAAREDLARVRPDLDGNEIMEILNIPAG 450
Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+VG K+ + + + L
Sbjct: 451 PQVGKAWSFLKELRLERGPLERDDAIAELK 480
>gi|288553438|ref|YP_003425373.1| polyA polymerase family protein [Bacillus pseudofirmus OF4]
gi|288544598|gb|ADC48481.1| polyA polymerase family protein [Bacillus pseudofirmus OF4]
Length = 845
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 72/402 (17%), Positives = 135/402 (33%), Gaps = 25/402 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L I ++ + +VGG VRD L+ +D+D+ + + + I
Sbjct: 454 LKLIGREADRFGVNAYLVGGFVRDLLLKRPNEDLDVVIEGDGIEFANVLAASNGGSIKKH 513
Query: 75 ISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
++GT DI T R++ + +V + + D RRDFTINA+
Sbjct: 514 DTFGTATWTTPDDMKIDIVTCRTEYYAETASLPIVRSSNIHEDLTRRDFTINAMAMSISE 573
Query: 134 K----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
++D G+ DL+ + I+ + +ED RI R RF +G +A
Sbjct: 574 HSFGKLLDEYQGIEDLKAKKIRILHPI--SFIEDPTRIFRAVRFAVRFGYSIEGETARLA 631
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ EAK+ + ++ S
Sbjct: 632 QSAMSHLFSLSQQRLRQELTLIHKEAKDLEAFYLLDTLNVWKTLFQKELPASS------W 685
Query: 250 IEAEQVFEWKIDSLLRF-IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
AE+VF+ ++ L S + + + ++ ++
Sbjct: 686 QYAERVFKQSGHTVFHILTALASPLSNWREMIQLYIMTAKERVFIEQLNELKQAPIEEIK 745
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
SI E+ + Y D+ + L + +L +K LTGD
Sbjct: 746 SIGELHRYLYAVHDETLRFYLLDPTQRFHTHLD-----------DYFKKRQKISLYLTGD 794
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
D++K PG + L + + +N +E +L++
Sbjct: 795 DLIKLDFKPGPHFRDYLFELEIKQLNGEISSKEEATKWVLKE 836
>gi|260909396|ref|ZP_05916104.1| tRNA nucleotidyltransferase [Prevotella sp. oral taxon 472 str.
F0295]
gi|260636488|gb|EEX54470.1| tRNA nucleotidyltransferase [Prevotella sp. oral taxon 472 str.
F0295]
Length = 490
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 76/448 (16%), Positives = 154/448 (34%), Gaps = 55/448 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + +VGG VRD + + DID+ +V K+ K I
Sbjct: 33 KIGEAADALGVPCYVVGGYVRDLFLERTSNDIDVVVVGSGIQVADALRKSLGKKAHISVF 92
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
++GT ++ R + R + + +V + D RRDFTINA+ A +
Sbjct: 93 RNFGTAQVKFRGYEIEFVGARKESYSHDSRKPIVENGTLEDDQNRRDFTINAMAACLNAE 152
Query: 135 V----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
ID G+ DL + I+ D +D LR+LR RF I+ + A
Sbjct: 153 NFGKLIDPFDGVYDLEDGIIRTPLDPDITFSDDPLRMLRCVRFATQLRFF-IEDETFDAL 211
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----------Q 239
+ + +KI+S ERI E+NK++ P V ++ G+ + I ++ +
Sbjct: 212 TRNAERIKIISGERIADELNKIMMTPQPSRGFVELHRCGLLQLILPELTRLDNVETRNGR 271
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSLPREI---- 291
+ + + + + + LR+ L+ K F I
Sbjct: 272 AHKNNFYHTLEVLDNICRYTDNLWLRWAALLHDVGKAKTKRWDPATGWTFHNHNYIGAKM 331
Query: 292 ---------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
++ + + ++ + + L
Sbjct: 332 VPDLFRRMKLPLDSKMKYVQKLVDLHMRPIVIAEDSVTDSAVRRLMNDAGDDTDDLMTLC 391
Query: 337 YNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY-GIPPGKKVG 382
++T ++ + L + ++ + G+++++ + P ++VG
Sbjct: 392 EADITSKNHIKKQRFLDNFRIVREKLADLKERDYKRLLQPVIDGNEIMEMFHLGPSREVG 451
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ K +++ +E L LL +
Sbjct: 452 TLKQTLKDAVLDNRVPNEREPLMQLLMR 479
>gi|322378795|ref|ZP_08053224.1| poly(A) polymerase [Helicobacter suis HS1]
gi|322380644|ref|ZP_08054796.1| poly(A) polymerase [Helicobacter suis HS5]
gi|321146966|gb|EFX41714.1| poly(A) polymerase [Helicobacter suis HS5]
gi|321148825|gb|EFX43296.1| poly(A) polymerase [Helicobacter suis HS1]
Length = 407
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 101/406 (24%), Positives = 176/406 (43%), Gaps = 24/406 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
L+ ++ L+ +G ++ +VGG+VRD L+N +D D+AT P++++ + +++ +
Sbjct: 14 ALLELIDLIEQGGFEAVVVGGSVRDLLLNKKPKDYDLATNATPEQLLALL-QSKMQTSLV 72
Query: 74 SISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ +GT+ ++ + ++F+ITT R + + R+ KV F ++D RRD TINAL +
Sbjct: 73 GLKFGTLGVLYKGQFFEITTYRLEFDYTNHRHPKVSFVNSLESDLSRRDLTINALAFHPK 132
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++D GGL DL++R + F+G R+ ED LRILR RF + G +D A
Sbjct: 133 KGLLDLHGGLQDLKDRKLAFVGVPSVRLEEDALRILRAMRFASTLGF-KLDVKSENALFD 191
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L +S ERIW E ++LL N + M + + IF + L +LS
Sbjct: 192 QANLLDKISKERIWHECSRLLVGFNASDV--CMRYCTLLERIFGSLDSKLLAKLSC---- 245
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ + R +++ D+ S+ + K P++ L S
Sbjct: 246 -----TPPNLVARLLLIYQNCDQLSMQTCLKNLKAPKQFILTLNKLHPYTKINPQDSKIW 300
Query: 313 IKKLFYLYGDKVMIAKLKIFLA----LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+K+ + A L A L H I + + L GD
Sbjct: 301 VKQQLQVLSLSQFRAWLGWLQASDVPLSRALRVHFKVIGIQK-----EVYSLHFLALKGD 355
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
V G+ G ++G L C +E + + L +K I
Sbjct: 356 HVKNLGLR-GAEIGACLQACLKEVVQERVKNELGALLEWAQKWIKD 400
>gi|315606302|ref|ZP_07881318.1| polyA polymerase family protein [Prevotella buccae ATCC 33574]
gi|315251993|gb|EFU31966.1| polyA polymerase family protein [Prevotella buccae ATCC 33574]
Length = 488
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 77/462 (16%), Positives = 158/462 (34%), Gaps = 68/462 (14%)
Query: 16 INILSLLNKGED----KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK-- 69
+I +++ D + +VGG VRD + DID+ +V K +
Sbjct: 15 KDIFHQISRAADSLHAECYVVGGYVRDLFLERPSGDIDVVVVGSGIQVADALKKQLGRKA 74
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I ++GT ++ + + R + + VV + D RRDFTINAL
Sbjct: 75 HISVFRNFGTAQVKYKGLEVEFVGARKESYSHDSRKPVVENGTLEDDQNRRDFTINALAV 134
Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
G+++D G+ DL I D +D LR++R RF +I+
Sbjct: 135 CLNGDRFGQLVDPFDGIRDLEEGIIATPLDPDITFSDDPLRMMRCVRFATQLNF-DIEPA 193
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
A + + LKI+S ERI E+NK++ A +P +++ G+ I ++ ++ + +
Sbjct: 194 TYDALSRNARRLKIVSGERIADEMNKIMLAPHPSKGFYYLHETGLLYLILPELCQLDIVE 253
Query: 246 LSQVIEAEQVFEWKI--------------------DSLLRFIVLISWQDKKSILSMA--- 282
+ + + +R+ L K
Sbjct: 254 TRNGRAHKNNYYHTLEVLENVCRAASAPDCPSPETHLWIRWAALFHDIGKPRSKRWDNVQ 313
Query: 283 -KKFSLPREI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
F I ++ + ++ E+
Sbjct: 314 GWTFHNHNNIGARMVADIFRRMKLPMDAKMKYVQKLVELHMRPIAIADEEVTDSAVRRLV 373
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDD 369
+ + L ++T ++ + L + ++ + G++
Sbjct: 374 NDAGDDIDDLMLLCEADITSKNQVRKARFLENFRIVREKIADLRERDYKRLLQPVIDGNE 433
Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+++ +PP ++VG + K +++ +E L LL +
Sbjct: 434 IMEMFHLPPCREVGTLKQVLKNAVLDNEVPNEREPLMALLMQ 475
>gi|15891938|ref|NP_359652.1| poly(A) polymerase [Rickettsia conorii str. Malish 7]
gi|15619048|gb|AAL02553.1| poly(A) polymerase [Rickettsia conorii str. Malish 7]
Length = 436
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 127/449 (28%), Positives = 192/449 (42%), Gaps = 72/449 (16%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLM----NLSVQ------------------- 46
ILSLLN+ ++ ++GG VRD+L+ N + +
Sbjct: 10 IPSKGYRKILSLLNEKG-QARLIGGCVRDALLDLLHNKTNKEEFEGDTERRIAMYINVRE 68
Query: 47 --------------------------DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
DIDIAT + P V I S + K IPT + +GTI
Sbjct: 69 DSSTGSTYKLPLEASYPRDRLEKGSCDIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTI 128
Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYV 139
+ F+ITTLR D+ +GR+AKV+FT D+ D+ RRDFTINAL ++ DY
Sbjct: 129 TATLNNEKFEITTLRKDIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYF 188
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199
G DL+ + FIG+A RI EDYLRILRFFRF ++Y + +D A K GLK
Sbjct: 189 EGFKDLQQEKVVFIGEALDRIKEDYLRILRFFRFSSYYANQ-LDDGNFKACKALKDGLKT 247
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
LS ERI SE++K++ +K + M+ GI + IF +Q + Q + + +
Sbjct: 248 LSRERIKSEMDKIIVSKRAAQILKAMFEIGILELIF-SIQNYEIKFFEQANDFKLELVTR 306
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
LL ++ L + + + ++S N + K +
Sbjct: 307 YALLLYCQKDLN-------LKVFLDWKFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNY 359
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379
K + A L H + ++ P F + G+D++ I K
Sbjct: 360 --------KEYLLAARIIGKLNHSQVKEFILKYDALLR---PKFQVNGNDLLNMNIEK-K 407
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K+G L + K WI F+ S+ +L L
Sbjct: 408 KIGAKLEYLKNFWIEQDFKPSKLELLAKL 436
>gi|258405470|ref|YP_003198212.1| cyclic nucleotide-binding protein [Desulfohalobium retbaense DSM
5692]
gi|257797697|gb|ACV68634.1| cyclic nucleotide-binding protein [Desulfohalobium retbaense DSM
5692]
Length = 902
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 67/415 (16%), Positives = 134/415 (32%), Gaps = 20/415 (4%)
Query: 10 FHDSDLINILSLLNKGE-------DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
H+S ++++L + VGG VRD L++ D+D+ R
Sbjct: 470 LHNSLPQEVVAMLTQAGDLARDLGYHVYAVGGFVRDILLHRRNLDVDLVVEGDGIYFARR 529
Query: 63 FSKTRYKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ + + T II + D+ T R + V K D RRD
Sbjct: 530 LALDLGGRVRAHKKFKTAVIILPDGQRIDVATARLEYYEHPAALPTVELSTVKMDLSRRD 589
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIG--DAHHRILEDYLRILRFFRFFAHYGE 179
FT+NAL + + + + +ED RILR RF +
Sbjct: 590 FTVNALAVQLDPEQFGRLVDFFGGQKDIKEKTIRVMHSLSFVEDPTRILRAVRFEQRFHF 649
Query: 180 KNIDSDGLVASIKAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ + + + LS R++ E+ +L PL + + + I + I +
Sbjct: 650 QLGGQTERLIKNAQRLNMMHKLSGSRVFGELRLILNESKPLACLQRLESFNILESIHPLL 709
Query: 239 QEISLDQLSQVIEAEQVFEW--------KIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
+ + ++ + E E+V W + L + + + +S + + +
Sbjct: 710 K-LDGNRQRILEETERVLGWYRLLYLDPEPRPWLVYFLGLCSGYNQSQVHLLAHRLAFPQ 768
Query: 291 IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
R I + +Q + + D + + + Y
Sbjct: 769 KRENFIQQLRQDISQCREQLGSWMQNHGQVSDLFFLLEPLPLEGVLYLMARGYKDPVRRH 828
Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+ + ++ +TG D+ + G+P G IL ++ L
Sbjct: 829 LSLYLTQYRGQEPDITGKDLQQMGLPSGPLYRTILQRVLAAKLDGKAPDRPAQLE 883
>gi|237736527|ref|ZP_04567008.1| poly(a) polymerase [Fusobacterium mortiferum ATCC 9817]
gi|229421569|gb|EEO36616.1| poly(a) polymerase [Fusobacterium mortiferum ATCC 9817]
Length = 446
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 99/447 (22%), Positives = 176/447 (39%), Gaps = 44/447 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ D ++ IL +L K K IVGG VRD+L+ L +D D T I ++++ IFS+ K
Sbjct: 4 YLDRNIKLILDILQKNG-KGYIVGGYVRDALLGLEPKDCDFVTDIEYEKLLNIFSEYSPK 62
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINAL 127
+G I+I +++I +R D + FT++ D RRDFTINA+
Sbjct: 63 --EIGKHFGIIQIKIDGVHYEIAKMRQDKGIPKDRKEQEIEFTKNIYEDLKRRDFTINAI 120
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D + D+ ++T++F+G+ RI ED LRILR+FRF A + +
Sbjct: 121 AFDGEKFYYGDSDSQKDIESKTLRFVGECKKRIEEDPLRILRYFRFLATKD-LKHLDEDV 179
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
K ++ L+ LS ERI E +K++ KN N + + + I + I + +E
Sbjct: 180 EEISKYRELLQNLSVERIREEFDKIITGKNTYNILKILSDKKILEIIIPEWKECRGFNQR 239
Query: 248 QVIEAEQVFEW--------KIDSLLRFIVLISWQDKKSILS------------------- 280
+ V E +D + R + K S
Sbjct: 240 NIHHIYTVDEHILQALKETDMDLITRLAIFFHDIGKPKCFSLGEDGKGHFYNHELISAEM 299
Query: 281 ----MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
M + I + IKK+ + M+ ++ A
Sbjct: 300 AKEIMGRLRYDKNSIEKVYRIIQYHLVYRIDNEEKFIKKMMNRLEKEDMLRYFQVLRADR 359
Query: 337 YNNLTHQDTC---FILQVLSDIIHWKKPL----FPLTGDDVVKYGIPPGKKVGNILVHCK 389
+ + + ++ DI+ P+ ++G ++++ G GK +G +L +
Sbjct: 360 KTHRPPYNFEQIERLEKLYQDIVEKNLPISIKDLNISGKELLENGFKQGKNIGEVLKYLL 419
Query: 390 QEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ + +QE L L + +
Sbjct: 420 NQVLEYPEYNTQEQLLKLALEYKKGRE 446
>gi|229586245|ref|YP_002844746.1| Poly(A) polymerase [Rickettsia africae ESF-5]
gi|228021295|gb|ACP53003.1| Poly(A) polymerase [Rickettsia africae ESF-5]
Length = 436
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 127/449 (28%), Positives = 192/449 (42%), Gaps = 72/449 (16%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLM----NLSVQ------------------- 46
ILSLLN+ ++ ++GG VRD+L+ N + +
Sbjct: 10 IPSKGYRKILSLLNEKG-QARLIGGCVRDALLDLLHNKTNKEEFEGDTEHRIAMYINVRE 68
Query: 47 --------------------------DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
DIDIAT + P V I S + K IPT + +GTI
Sbjct: 69 DSSTGSTYKLPLEASYPRDRLEKGSCDIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTI 128
Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYV 139
+ F+ITTLR D+ +GR+AKV+FT D+ D+ RRDFTINAL ++ DY
Sbjct: 129 TATLNNEKFEITTLRKDIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYF 188
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199
G DL+ + FIG+A RI EDYLRILRFFRF ++Y + +D A K GLK
Sbjct: 189 EGFKDLQQEKVVFIGEALDRIKEDYLRILRFFRFSSYYANQ-LDDGNFKACKALKDGLKT 247
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
LS ERI SE++K++ +K + M+ GI + IF +Q + Q + + +
Sbjct: 248 LSRERIKSEMDKIIVSKRAAQILKAMFEIGILELIF-SIQNYEIKFFEQANDFKLELVTR 306
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
LL ++ L + + + ++S N + K +
Sbjct: 307 YALLLYCQKDLN-------LKVFLDWKFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNY 359
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379
K + A L H + ++ P F + G+D++ I K
Sbjct: 360 --------KEYLLAARIIGKLNHSQVKEFILKYDALLR---PKFQVNGNDLLNMNIEK-K 407
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K+G L + K WI F+ S+ +L L
Sbjct: 408 KIGAKLEYLKNFWIEQDFKPSKLELLAKL 436
>gi|281423703|ref|ZP_06254616.1| polyA polymerase family protein [Prevotella oris F0302]
gi|281402255|gb|EFB33086.1| polyA polymerase family protein [Prevotella oris F0302]
Length = 483
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 74/479 (15%), Positives = 162/479 (33%), Gaps = 66/479 (13%)
Query: 1 MVSIVQHKW--FHDSDLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M ++ + D+ +++ +K + +VGG VRD + DID+
Sbjct: 1 MRNLTDADLARLLNKDIFHLISEAADKLALECYVVGGYVRDLFLERPSNDIDVVVVGSGI 60
Query: 58 RVMRIFSKTRYKV--IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115
+V + + ++GT ++ + R + + V +
Sbjct: 61 QVASELKNRLGRRAHLSVFRNFGTAQVKYGGMEIEFVGARKESYSHDSRKPHVEDGTLED 120
Query: 116 DSLRRDFTINALYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171
D RRDFTINAL + ++D G+ D+ + I+ D +D LR++R
Sbjct: 121 DQNRRDFTINALAVCLNKEHFGQLVDPFDGVYDMEDGIIRTPLDPDITFSDDPLRMMRCI 180
Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231
RF I+ + A + + +KI+S ERI E+NK++ + P + +Y G+
Sbjct: 181 RFATQLNFF-IEDETFEALQRNAERIKIISGERIDEELNKIMLTQTPSKGFIDLYRCGLL 239
Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFEWKID-------------------SLLRFIVLISW 272
+ I ++ + + + + F ++ LR+ L
Sbjct: 240 QLIIPELVALDVVETRNGRAHKNNFYHTLEVLDNLCKAQTDNGKLGEMALWLRWSALFHD 299
Query: 273 QDKKSILSMAKKFSLPRE-----------------------IRYFLISFFNCNFNQKTLS 309
K ++ + + ++
Sbjct: 300 IGKPRCKRWDNVIGWSFHNHNYVGAKMIPGIFRRMKLPMDSKMKYVQKMVDLHMRPIVIA 359
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------- 361
E+ + + L ++T ++ + L + ++
Sbjct: 360 DEEVTDSAVRRLMNDAGDDIDDLMMLCEADITSKNQVRKQRFLDNFRIVREKIADLKVRD 419
Query: 362 -----LFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ G++++ K+ + P ++VG + K +++ + +E L LL K S
Sbjct: 420 YKRLLQPCIDGNEIMEKFHLGPCREVGQLKQTLKDAVLDNKVENEREPLMQLLMKKAKS 478
>gi|157827883|ref|YP_001494125.1| poly(A) polymerase [Rickettsia rickettsii str. 'Sheila Smith']
gi|165932572|ref|YP_001649361.1| poly(A) polymerase [Rickettsia rickettsii str. Iowa]
gi|157800364|gb|ABV75617.1| poly(A) polymerase [Rickettsia rickettsii str. 'Sheila Smith']
gi|165907659|gb|ABY71955.1| poly(A) polymerase [Rickettsia rickettsii str. Iowa]
Length = 436
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 127/449 (28%), Positives = 192/449 (42%), Gaps = 72/449 (16%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLM----NLSVQ------------------- 46
ILSLLN+ ++ ++GG VRD+L+ N + +
Sbjct: 10 IPSKGYRKILSLLNEKG-QARLIGGCVRDALLDLLHNKTNKEEFEGDTERRIAMYINVRE 68
Query: 47 --------------------------DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
DIDIAT + P V I S + K IPT + +GTI
Sbjct: 69 DSSTRSTYKLPLEASYPRDRLEKGSRDIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTI 128
Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYV 139
+ F+ITTLR D+ +GR+AKV+FT D+ D+ RRDFTINAL ++ DY
Sbjct: 129 TATLNNEKFEITTLRKDIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYF 188
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199
G DL+ + FIG+A RI EDYLRILRFFRF ++Y + +D A K GLK
Sbjct: 189 EGFKDLQQEKVVFIGEALDRIKEDYLRILRFFRFSSYYANQ-LDDGSFKACKALKDGLKT 247
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
LS ERI SE++K++ +K + M+ GI + IF +Q + Q + + +
Sbjct: 248 LSRERIKSEMDKIIVSKRAAQILKAMFEIGILELIF-SIQNYEIKFFEQANDFKLELVTR 306
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
LL ++ L + + + ++S N + K +
Sbjct: 307 YALLLYCQKDLN-------LKVFLDWKFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNY 359
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379
K + A L H + ++ P F + G+D++ I K
Sbjct: 360 --------KEYLLAARIIGKLNHSQVKEFILKYDALLR---PKFQVNGNDLLNMNIEK-K 407
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K+G L + K WI F+ S+ +L L
Sbjct: 408 KIGAKLEYLKNFWIEQDFKPSKLELLAKL 436
>gi|288927029|ref|ZP_06420922.1| polyA polymerase family protein [Prevotella buccae D17]
gi|288336203|gb|EFC74591.1| polyA polymerase family protein [Prevotella buccae D17]
Length = 488
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 77/462 (16%), Positives = 158/462 (34%), Gaps = 68/462 (14%)
Query: 16 INILSLLNKGED----KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK-- 69
+I +++ D + +VGG VRD + DID+ +V K +
Sbjct: 15 KDIFHQISRAADSLHAECYVVGGYVRDLFLERPSGDIDVVVVGSGIQVADALKKQLGRKA 74
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I ++GT ++ + + R + + VV + D RRDFTINAL
Sbjct: 75 HISVFRNFGTAQVKYKGLEVEFVGARKESYSHDSRKPVVENGTLEDDQNRRDFTINALAV 134
Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
G+++D G+ DL I D +D LR++R RF +I+
Sbjct: 135 CLNGDRFGQLVDPFDGIRDLEEGIIATPLDPDITFSDDPLRMMRCVRFATQLNF-DIEPA 193
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
A + + LKI+S ERI E+NK++ A +P +++ G+ I ++ ++ + +
Sbjct: 194 TYDALSRNARRLKIISGERIADEMNKIMLAPHPSKGFYYLHETGLLYLILPELCQLDIVE 253
Query: 246 LSQVIEAEQVFEWKI--------------------DSLLRFIVLISWQDKKSILSMA--- 282
+ + + +R+ L K
Sbjct: 254 TRNGRAHKNNYYHTLEVLENVCRAASAPDCPSPETHLWIRWAALFHDIGKPRSKRWDNVQ 313
Query: 283 -KKFSLPREI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
F I ++ + ++ E+
Sbjct: 314 GWTFHNHNNIGARMVADIFRRMKLPMDAKMKYVQKLVELHMRPIAIADEEVTDSAVRRLV 373
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDD 369
+ + L ++T ++ + L + ++ + G++
Sbjct: 374 NDAGDDIDDLMLLCEADITSKNQVRKARFLENFRIVREKIADLRERDYKRLLQPVIDGNE 433
Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+++ +PP ++VG + K +++ +E L LL +
Sbjct: 434 IMEMFHLPPCREVGTLKQVLKNAVLDNEVPNEREPLMALLMQ 475
>gi|296327658|ref|ZP_06870201.1| poly(A) polymerase [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|296155248|gb|EFG96022.1| poly(A) polymerase [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 451
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 96/437 (21%), Positives = 179/437 (40%), Gaps = 49/437 (11%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
IL+ LN+ K IVGGA+RD L+ L +D+D T + + + ++FS+ K T S+
Sbjct: 16 ILNKLNEYG-KGYIVGGAIRDILLGLKPKDVDFTTNLPYETLKKLFSEYNPK--ETGKSF 72
Query: 78 GTIKIICRKKYFDITTLRSDLIT-------DGRYAKVVFTRDWKADSLRRDFTINALYAD 130
G ++I ++I R D KV F D K D RRDFTINA+ +
Sbjct: 73 GVLRIRIDDIDYEIAKFREDNYEEKDGLKIIPEGKKVSFVDDIKNDLTRRDFTINAMAYN 132
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D G D+ N+ I FIG+A RI+ED LR+LR FRF + ++ + + A
Sbjct: 133 EVEGIVDLYNGQKDIENKVINFIGNAEQRIIEDPLRVLRAFRFMSRLDF-SLSENTIEAI 191
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K K LK + E+I E +KLL +N N + M + G+ + I + + +
Sbjct: 192 KKQKNLLKNIPEEKITMEFSKLLLGENIRNTLTLMKDTGVLELIIPEFKATYDFEQCNPH 251
Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQ----------------------DKKSILS 280
+F D L++ L+
Sbjct: 252 HNLDLFNHIISVVSKVPADLELKYSALLHDIAKPVVQTFDEKGIAHYKTHEIVGADMARD 311
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ + LP ++ + + K ++ + KL G + ++ +A + +
Sbjct: 312 ILTRLKLPVKLIETVTEIIKKHMVLYKDVTDKKFNKLLSEIGYDNLWRLIEHCIADNESK 371
Query: 340 LTHQDT------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
+ + + + + + G D+++ G G ++G I +++
Sbjct: 372 NNEVVSTENDLHERLKRAVEKQMQITVNDLAVNGKDLIELGFI-GSEIGKIKEELLDKYL 430
Query: 394 NSSFQLSQEDLHHLLRK 410
+ Q +E++ +++
Sbjct: 431 SEEVQNEKEEMLEYVKE 447
>gi|227496625|ref|ZP_03926901.1| tRNA adenylyltransferase [Actinomyces urogenitalis DSM 15434]
gi|226833858|gb|EEH66241.1| tRNA adenylyltransferase [Actinomyces urogenitalis DSM 15434]
Length = 489
Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats.
Identities = 79/439 (17%), Positives = 145/439 (33%), Gaps = 58/439 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L + L + + +VGG VRD+ + + D+D T+ PD I ++
Sbjct: 29 PSLAALGHLFVRAGHELALVGGPVRDAFLGVVPHDLDCTTSARPDETEAILTQWGDACWD 88
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130
+GTI ++TT R++ G R V + + D RRDFT+NA+
Sbjct: 89 IGKEFGTIGARKGDVVVEVTTYRTEEYEVGSRKPVVAYGETLEGDLTRRDFTVNAMALRL 148
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GG DL ++ A +D LRI+R RF A G +++ D L A
Sbjct: 149 PDLELVDPCGGRADLEAGVLRTPVTAVQSFDDDPLRIMRAARFAAQLGF-DVEMDVLEAM 207
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-------- 242
+ L+I+S+ER+ +E+ +LL ++ P + M + G+ + ++ +
Sbjct: 208 SEMAGRLEIVSAERVRAELERLLTSRWPRRGLELMVHSGVADVVLPELSALQETVDEKGR 267
Query: 243 -----------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK--------------- 276
LDQ + Q D +LR L+ K
Sbjct: 268 HKDVYEHTLTVLDQAIALETGPQGPVPAPDLVLRLAALLHDIGKPATRRFEGGGVVTFHA 327
Query: 277 -------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
++ + + + Y+ ++
Sbjct: 328 HDLVGARMAKKRLTALRFDKQTIKDVARLVELHLRFHGYADARWSDSAVRRYVTDAGPLL 387
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVV-KYGI 375
+L + + D+ L G ++ + I
Sbjct: 388 ERLHRLTRADVTTGNKRKAQMLSAAYDDLEERIAELAKQEELAAIRPDLDGQQIMAELRI 447
Query: 376 PPGKKVGNILVHCKQEWIN 394
PG VG +
Sbjct: 448 EPGPVVGQAYRFLMDLRME 466
>gi|317180474|dbj|BAJ58260.1| poly(A) polymerase [Helicobacter pylori F32]
Length = 407
Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats.
Identities = 78/403 (19%), Positives = 144/403 (35%), Gaps = 22/403 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + +L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEKELQELFGIYEKSPYELYLVGGCVRDCLMGIAPKDYDLTSNALVNESKELLLKHHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--ADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + + D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N ++N+ I+ +G+A R ED LRILR RF A G K +
Sbjct: 122 IAYSPTKGLIDPFKGQNAIKNQMIECVGEARLRFFEDALRILRALRFSATLGFKIV---- 177
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + ++ + + L
Sbjct: 178 ---------LSTKEAVFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVTQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ E + + LR + P++ + C+
Sbjct: 229 EEIENLEFLKNAPFNLELR------LLGFFKHQKSLENLCYPKKTCVLFLKAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ + +KK L
Sbjct: 283 NIHNKTELKFLLKNYDLEPFNLALDFYALKNPKHALKIKTLLKEIFNANEPFKKEHLALR 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
GD + G +++G IL C I S E L ++
Sbjct: 343 GDTLQNLGYQR-QQIGEILNACLNLVIAHPKNNSLEWLIKWVK 384
>gi|297379841|gb|ADI34728.1| CCA-adding enzyme [Helicobacter pylori v225d]
Length = 407
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 78/403 (19%), Positives = 141/403 (34%), Gaps = 22/403 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ D +L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELDKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--ADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + + D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ VID G N ++N+ I+ +G+ R ED LRILR RF A G K S
Sbjct: 122 IAYSPTKGVIDPFKGQNAIKNQIIECVGEVRLRFFEDALRILRALRFSAALGFKIAPS-- 179
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + ++ + + L
Sbjct: 180 -----------TKKAIFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVTQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + + LR + P++ + C+
Sbjct: 229 EKIENLGFLKNAPFNLELR------LLGFFKHQKSLENLRYPKKTCVLFLKAKKCHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ + +KK L
Sbjct: 283 NIHNKTELKFLLKNYDLEPFNLALEFYALKNPKRALKIKSLLKEIFNANEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +++G IL C I S E L ++
Sbjct: 343 GGTLQNLGYRR-QQIGEILNACLNLVIAHPENNSLEWLIKWVK 384
>gi|283852932|ref|ZP_06370192.1| Polynucleotide adenylyltransferase region [Desulfovibrio sp.
FW1012B]
gi|283571690|gb|EFC19690.1| Polynucleotide adenylyltransferase region [Desulfovibrio sp.
FW1012B]
Length = 947
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 84/418 (20%), Positives = 142/418 (33%), Gaps = 23/418 (5%)
Query: 16 INILSLLNKGE-------DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+IL LL K +VGG VRD L+ D+D+ +K
Sbjct: 471 KDILELLKKAGDLGREMGFAVYVVGGFVRDLLLKHPNYDVDLVVEGDGIAFAAAMAKAYG 530
Query: 69 KVIPTSISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ T II D+ T R + V K D RRDFT+NAL
Sbjct: 531 GRYKAHPKFKTAVIILPGDARVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTVNAL 590
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ + + + +ED RI+R RF +G +
Sbjct: 591 AVHLLPDRFGELVDFFGAQRDIKERVLRVLHSLSFVEDPTRIVRAIRFSERFGFRIGGQT 650
Query: 186 GLVASIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-----DVQ 239
+ LS R++ E+ +LE KNPL + M + + +
Sbjct: 651 DRLIKNAVRHNFFHRLSGARVFHELRLILEEKNPLACLRRMQEYKLLAAVHPLLALTPAR 710
Query: 240 EISLDQLSQVIEAEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
E L ++ VI ++ + + L+ F+ L S D + +AK+ + + +
Sbjct: 711 ETVLMEVENVINWYRLLYIEPAPQNWLVYFLALCSGMDAEQFTVIAKRLNFSKRTAGEIA 770
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD-I 355
S L ++ L I AL ++ + + +S +
Sbjct: 771 SLRVQIRETAQGLFNWEYHKGPLSELYFLLEGLPIEGALFLMARNPREP--LQKYVSQHL 828
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ +TG+D+ K G+ PG + IL I+ E L + R+L A
Sbjct: 829 TSLRGKRVEVTGNDLKKLGVEPGPQYTGILRRILGAVIDGHAPCRSEQL-EMARRLAA 885
>gi|254779373|ref|YP_003057478.1| putative polynucleotide adenylyltransferase; putative poly(A)
polymerase [Helicobacter pylori B38]
gi|254001284|emb|CAX29261.1| Putative polynucleotide adenylyltransferase; putative poly(A)
polymerase [Helicobacter pylori B38]
Length = 402
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 80/403 (19%), Positives = 145/403 (35%), Gaps = 25/403 (6%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ +++L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELNTELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--ADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + + D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G + + N+ I+ +G+A R ED LRILR RF A G K S
Sbjct: 122 IAYSPTKGLIDPFKGQSAIENQVIECVGEARLRFFEDALRILRALRFSATLGFKIAPSTK 181
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + + G E+ + QEI
Sbjct: 182 RAVFACKDLLKHLSKERLQSE--------------LNKLLMGKNAYEMAKEYQEI----- 222
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+++ E++ F + + + P++ + C+
Sbjct: 223 LELVTQEKIENLGFLKNAPFNLELRLLGFFKHQKSLENLRYPKKTCILFLKAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++L+ +KK L
Sbjct: 283 NIHNKTELKFLLKNYDLEPFNLALDFYALKNPKHALKIKGLLKEILNANEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +K+G IL C I + L L++
Sbjct: 343 GGALQNLGYQH-QKIGEILNACLDLVIENPKNN---ALEWLIK 381
>gi|119953484|ref|YP_945693.1| poly(A) polymerase [Borrelia turicatae 91E135]
gi|119862255|gb|AAX18023.1| poly(A) polymerase [Borrelia turicatae 91E135]
Length = 407
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 99/394 (25%), Positives = 164/394 (41%), Gaps = 18/394 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ D+I I + NK + +VGGA+RD L+ D D T P+ +M++F
Sbjct: 5 INTKDIIKISKIFNKHNYEFFLVGGALRDLLLKKIPYDFDFTTNATPEEIMQLFPNN--- 61
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINAL 127
+ T I +GTI II KK F++TT R D+ + + A FT++ D RRDFTIN++
Sbjct: 62 -VKTGIKHGTISIIFNKKIFEVTTYRIDIDYENKRAPKNIKFTKNLNEDLQRRDFTINSI 120
Query: 128 YADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++ID G DL + I+ IGD + R ED LRILR RF + +
Sbjct: 121 AMNILNYEIIDCYKGKQDLNKKIIRCIGDPNKRFEEDALRILRAARFASTLDFTIDKNTL 180
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ K L LS ERI +E KLLE KNP+ I ++ FK +++
Sbjct: 181 ISMKYKKTNILF-LSKERINNEFIKLLEGKNPIKGINYLQKINFFKYF------FNIEIN 233
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + L ++ +D ++ K + ++ +
Sbjct: 234 KKLKNKITLLNKNKFYLKAMVIFTIKKDISCLIENLKSLRFSNKDIKLILLYKTVINEIN 293
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----L 362
TL I ++ + L +I FI+ + K P
Sbjct: 294 TLRIKKLHDIRILLSKATRENYKEILDIYKALKGKDHKLKFIINKIRRKKLLKDPLSLKE 353
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
+ G+D+ + K +G IL + +E + +
Sbjct: 354 LKINGNDIKNLKLTENKNIGKILDYLLREVLTNP 387
>gi|255326495|ref|ZP_05367577.1| tRNA adenylyltransferase [Rothia mucilaginosa ATCC 25296]
gi|255296535|gb|EET75870.1| tRNA adenylyltransferase [Rothia mucilaginosa ATCC 25296]
Length = 474
Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats.
Identities = 92/465 (19%), Positives = 162/465 (34%), Gaps = 65/465 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLM--NLSVQDIDIATTILPDRVMRIFSKTRYKV 70
D + L + +VGG VRD+L+ D D+ T P++ +I
Sbjct: 12 PDAAELGELYRAAGFELYLVGGIVRDNLLDDGGHFTDFDLTTDATPEQSEQILRAWGEHT 71
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
YGTI +++TT R++ ++D R V F D AD +RRDFTINA+ A
Sbjct: 72 WDIGKEYGTISARKNGVVYEVTTYRAEVYVSDSRKPTVEFGTDLSADLVRRDFTINAMAA 131
Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
G+V+D GG+ DLR ++ ED LR++R RF A + + +
Sbjct: 132 ALPSGEVVDLFGGVEDLRAGVLRTPRSPEESFSEDPLRMMRAARFAARFN-LEVAPEVFE 190
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH----------------MYNGGIFK 232
A + ++I+S+ER+ E+ KL+EA P + +
Sbjct: 191 AMREMAGRIEIISAERVRDELMKLIEADYPRVGLNLLVDTGLADYVLPELPALRMEMDPA 250
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKK------------- 276
DV SL + Q +E E + D +LRF L+ K
Sbjct: 251 HHHKDVYAHSLKVMEQAMEKETDEDGPCPAPDFILRFAALMHDIGKPKTRKFEKDGSVSF 310
Query: 277 ---------SILSMAKKFSLPREIRYFLISFFNCNF-----NQKTLSIPEIKKLFYLYGD 322
+ + + + + + + +++ GD
Sbjct: 311 LHHEVVGAKMVKKRMRALRFDNDTIKAVARLVELHMRFYGYRESGWTDSAVRRYVRDAGD 370
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK 372
+ + +L + + + + D+ L G +++
Sbjct: 371 Q--LERLHRVSRSDVTTRNRRLSRSLAEAYDDLERRIAELAAQEELDSIRPDLDGGQIMQ 428
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
GI PG VG ++ L +E+ L + +
Sbjct: 429 ILGITPGPVVGEAYKFLLNLRLDEG-SLPEEEAKARLLQWWEQRR 472
>gi|283458980|ref|YP_003363629.1| tRNA nucleotidyltransferase/poly(A) polymerase [Rothia mucilaginosa
DY-18]
gi|283135044|dbj|BAI65809.1| tRNA nucleotidyltransferase/poly(A) polymerase [Rothia mucilaginosa
DY-18]
Length = 474
Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 94/465 (20%), Positives = 161/465 (34%), Gaps = 65/465 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLM--NLSVQDIDIATTILPDRVMRIFSKTRYKV 70
D + L + +VGG VRD+L+ D D+ T P++ +I
Sbjct: 12 PDAAELGELYRAAGFELYLVGGIVRDNLLDDGGHFTDFDLTTDATPEQSEQILRGWGEHT 71
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
YGTI +++TT R++ ++D R V F D AD +RRDFTINA+ A
Sbjct: 72 WDIGKEYGTISARKNGVVYEVTTYRAEVYVSDSRKPTVEFGTDLSADLVRRDFTINAMAA 131
Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
G+V+D GG+ DLR ++ ED LR++R RF A + + +
Sbjct: 132 ALPSGEVVDLFGGVEDLRAGVLRTPRSPEESFSEDPLRMMRAARFAARFN-LEVAPEVFE 190
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH----------------MYNGGIFK 232
A + ++I+S+ER+ E+ KL+EA P + +
Sbjct: 191 AMREMAGRIEIISAERVRDELVKLIEADYPRVGLNLLVDTGLADYVLPELPALRMEMDPA 250
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKK------------- 276
DV SL + Q +E E E D +LRF L K
Sbjct: 251 HHHKDVYAHSLKVMEQAMEKETDDEGPCPAPDFILRFAALTHDIGKPKTRKFEKDGSVSF 310
Query: 277 ---------SILSMAKKFSLPREIRYFLISFFNCNF-----NQKTLSIPEIKKLFYLYGD 322
+ + + + + + + +++ GD
Sbjct: 311 LHHEVVGAKMVKKRMRALRFDNDTIKAVARLVELHMRFYGYRESGWTDSAVRRYVRDAGD 370
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK 372
+ + +L + + + + D+ L G +++
Sbjct: 371 Q--LERLHRVSRSDVTTRNRRLSRSLAEAYDDLERRIAELAAQEELDSIRPDLDGGQIMQ 428
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
GI PG VG ++ L +E+ L + Q
Sbjct: 429 ILGIAPGPVVGEAYKFLLNLRLDEG-SLPEEEAKARLVQWWEQRQ 472
>gi|261838119|gb|ACX97885.1| poly(A) polymerase [Helicobacter pylori 51]
Length = 407
Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 78/403 (19%), Positives = 142/403 (35%), Gaps = 22/403 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ D +L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELDKELKELFEIYEKSPYELYLVGGCVRDCLMGIAPKDYDLTSNALVNESKDLLLKHHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--ADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + + D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N ++N+ I+ +G+A R ED LRILR RF A G K + S
Sbjct: 122 IAYSPTKGIIDPFKGQNAIKNQIIECVGEARLRFFEDALRILRALRFGATLGFKIVPS-- 179
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ L + + + ++ + + L
Sbjct: 180 -----------TKREIFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVTQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + + LR + P++ + C+
Sbjct: 229 EKIENLGFLKNAPFNLELR------LLGFFKHQKSLENLHYPKKTCVLFLKAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ + +KK L
Sbjct: 283 NIHNKTELKFLLKNYDLEPFNLALDFYALKNPKRALKIKTLLKEISNANEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +++G IL C I S E L ++
Sbjct: 343 GGTLQNLGYQR-QQIGEILNACLNLVIAHPKNNSLEWLIKWVK 384
>gi|94264847|ref|ZP_01288623.1| Polynucleotide adenylyltransferase region [delta proteobacterium
MLMS-1]
gi|93454728|gb|EAT04989.1| Polynucleotide adenylyltransferase region [delta proteobacterium
MLMS-1]
Length = 468
Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 71/412 (17%), Positives = 132/412 (32%), Gaps = 22/412 (5%)
Query: 14 DLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L+ I + + + VGG VRD L+ D+D+ R ++ +
Sbjct: 55 ELLRIAGEVASGLGYHAFTVGGFVRDLLLQEKNFDLDLVVEGDGVRFADALARRLGGRVR 114
Query: 73 TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+ T + + D+ T R + V K D RRDF+INAL D
Sbjct: 115 IHKKFKTAVVKLPDGRKIDVATARLEYYDYPAALPTVELSSLKLDLYRRDFSINALAIDV 174
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + + +N + +ED RI R RF G +
Sbjct: 175 NPETFGTLVDFFNGQNDLKDKKLRVLHNLSFVEDPTRIFRAIRFEQRMGFSIGRHTERLI 234
Query: 190 SIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-----L 243
R ++E+ +L +NPL A+ + G+ + ++ + L
Sbjct: 235 KNAVRMNLYDRGYGYRFYNELRLMLSEENPLPALRRLAALGLLPFLSPRLRLDNRLEKVL 294
Query: 244 DQLSQVIEAEQVF---EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-- 298
+ + + E L+ + L ++ ++F LP +R L
Sbjct: 295 AEAQAALAWYDLLYLDEPCRSWLVYLLALTVDLKTAELMEFCQRFELPERLRRTLRREKV 354
Query: 299 -FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
PE Y + L LA+ + +
Sbjct: 355 AARQAATTLRRHEPESNSGIYHLLSGLAPEGLLFLLAIVRKKSAKKAISL------YVTE 408
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ L G D+ + G PG IL H ++ + ++++ H+ R
Sbjct: 409 LRTAQTALNGHDLKQLGYQPGPLFKEILQHLLDARLDGQVKTREDEVAHVRR 460
>gi|315225766|ref|ZP_07867554.1| polyA polymerase family protein [Parascardovia denticolens DSM
10105]
gi|315119898|gb|EFT83030.1| polyA polymerase family protein [Parascardovia denticolens DSM
10105]
Length = 509
Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 82/455 (18%), Positives = 156/455 (34%), Gaps = 63/455 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+++ + ++ +VGG VRD L+ D+D T+ P+ + K
Sbjct: 45 ALDLGEVFSQAGFDLALVGGPVRDLLLGRDPHDLDFCTSAKPEEFEPLLRKWGDGFWDMG 104
Query: 75 ISYGTIKIICR-----KKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+GT+ + + + ++TT RS+ D R +V + + D RRDFT+N++
Sbjct: 105 RKFGTLGTLKKLADGTEVSIEVTTYRSEVYDPDSRKPEVDYGDSLEGDLSRRDFTVNSMA 164
Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ + +D GGL DL R ++ + +D LR++R RF A I D
Sbjct: 165 IRLPEMEFVDVFGGLEDLDRRILRTPVEPEQSFSDDPLRMMRAVRFVAQLDF-RISLDTS 223
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH----------------MYNGGIF 231
A + ++I+S+ER+ E+ KLL + +P + + +
Sbjct: 224 AAIARMADRIEIVSAERVRDELVKLLLSAHPRKGLENLVASGLADYVLPELPALQMEMDP 283
Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM------- 281
+ DV E ++ L + I E E D LR ++ K
Sbjct: 284 QHHHKDVFEHTMKVLERAIALETDAEGPVPAPDLELRLAAVMHDVGKPRTRRFEPDGKVS 343
Query: 282 ---------------AKKFSLPREIRYFLISFFNCNFNQKTL-SIPEIKKLFYLYGDKV- 324
K I + N + P Y
Sbjct: 344 FYHHDAVGAKITKRRLKALHFDHHIVNDVADLVNMHLRFHGYVDEPWSDSAVRRYVKDAG 403
Query: 325 -MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK- 372
+ +L + Q + ++ + L GD +++
Sbjct: 404 PLYHRLNRLTRADATTQNKRKALAFEQAMDELERRVEDLKKKEDFAAIRPDLNGDQIMQI 463
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
G+ PG++VG H + +++ + + L
Sbjct: 464 LGLAPGREVGKAYKHMLEFRMDNGPVDHETAVAEL 498
>gi|78222788|ref|YP_384535.1| PolyA polymerase family protein [Geobacter metallireducens GS-15]
gi|78194043|gb|ABB31810.1| PolyA polymerase family protein [Geobacter metallireducens GS-15]
Length = 880
Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 78/430 (18%), Positives = 143/430 (33%), Gaps = 34/430 (7%)
Query: 10 FHDSDL-INILSLLNKGED-------KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
+ +L ++ L + +GG RD L+ DIDI
Sbjct: 455 LMNKNLPRRVVDTLRELGKVGDGLELPVFAIGGFARDLLLGGKNDDIDITVEGDGILFAE 514
Query: 62 IFSKTRYKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
F+ T + + +GT I+ D+ + R + V K D RR
Sbjct: 515 TFAATHECRVKSHAKFGTAVIVLPDGFKIDVASTRLEFYETPGALPTVERSSLKMDLYRR 574
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYG 178
DFTIN L + + + +ED R+ R RF G
Sbjct: 575 DFTINTLAIQLNPANFGLLIDYFGAYRDLRDKVIRVLHNLSFVEDPTRVFRAVRFEQRLG 634
Query: 179 EKNIDSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+ + K G L R+ +E+ +L + P+ AI+ M + G+ I D
Sbjct: 635 FQIARHTDNLIRNAVKMGFLDKLGGRRLLNELVIILREREPVRAILRMESLGLLGFIHPD 694
Query: 238 --VQEISLDQLSQVIEAEQVFEWKID------SLLRFIVLISWQDKKSILSMAKKFSLPR 289
++ +L L +V + FE ++ F+ L S + M + S+
Sbjct: 695 LTLETENLRVLDEVKKVVTWFELLYQRDQVETWVVYFLALTSLLADAAFFEMCTRLSVSE 754
Query: 290 E-------IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
+R + P ++ Y + + L +A +
Sbjct: 755 HYREKLIDMRVHGEQMLAVMERKVAGKKPVLRSNIYFWLRGLSPEVLLYIMAKTCRDEVR 814
Query: 343 QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402
+ + L ++ LTGDD+ G+PPG + IL +N +E
Sbjct: 815 KFVSLYVTQLREVTCM------LTGDDLKAIGLPPGPRYREILDAVLSARLNGEVSTREE 868
Query: 403 DLHHLLRKLI 412
+ +++++
Sbjct: 869 E-SRFVKQML 877
>gi|46580063|ref|YP_010871.1| polyA polymerase family protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449479|gb|AAS96130.1| polyA polymerase family protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|311233937|gb|ADP86791.1| Polynucleotide adenylyltransferase region [Desulfovibrio vulgaris
RCH1]
Length = 904
Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 82/415 (19%), Positives = 149/415 (35%), Gaps = 25/415 (6%)
Query: 13 SDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
L+ +L + ++ VGG VRD L++ D+D+ R+F+
Sbjct: 468 PSLLALLQRAGRLGERLGVSVYAVGGFVRDLLLDRPNYDLDLVIEGDGVAFARVFAAEVG 527
Query: 69 KVIPTSISYGTIKIICRKK-----YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
+ + T +I + D+ T R + V K D RRDFT
Sbjct: 528 GRLREHAKFKTALVIFTDENGAEQRVDVATARLEYYEYPAALPTVELSSIKMDLFRRDFT 587
Query: 124 INALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
INAL G+++D+ G D++++ I+ + +ED RILR RF Y
Sbjct: 588 INALAVQLDGAQFGRLVDFFGSQRDMKDKGIRVLH--SLSFVEDPTRILRAVRFAVRYDF 645
Query: 180 KNIDSDGLVASIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ + LS RI+ E+ +LE + P+ + + + G+ + I
Sbjct: 646 SIGPQTQRLIKNALGLGLMGRLSGPRIFHELRLILEEQAPVECLARLEHFGVLEAIHPLF 705
Query: 239 QEI--------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
+ S +Q+ + E L+ + L K S+A + +LP
Sbjct: 706 KLTPSRTNLLESTEQVLNWYRLLYLDEEPQRWLIYLLALCLNMKYKESASIADRLALPPS 765
Query: 291 IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
R +S + +++ L ++ L + LH + +
Sbjct: 766 ARNAFLSTRETLRSTGPKVEKWMREEGPLSELYALLKPLALEGVLHMMARSKSEDLR-RH 824
Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
V + + + GDD+ G+PPG G +L H ++ L
Sbjct: 825 VSQFLTRLQHEKLDINGDDLRAMGLPPGPAYGRVLQHVLAAKLDGHAPTRTVQLE 879
>gi|260904997|ref|ZP_05913319.1| tRNA nucleotidyltransferase [Brevibacterium linens BL2]
Length = 495
Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats.
Identities = 91/468 (19%), Positives = 151/468 (32%), Gaps = 72/468 (15%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76
+ + +VGG+VRD+L+ + D+D T PD ++ + S
Sbjct: 23 PLGKRFAAAGFELALVGGSVRDALLGRPMPDLDFTTDARPDDILALISDWVDTHWDIGRE 82
Query: 77 YGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGK 134
+GTI I +ITT R + R V F D AD +RRDFTI A+
Sbjct: 83 FGTIGAIKSGAQIEITTYRAEAYDPESRKPTVQFGTDLDADLVRRDFTIGAMAIRLPAMT 142
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
+D G DL I+ G A +D LR++R RF A G +
Sbjct: 143 FVDPFDGFTDLVEGVIRTPGTAADSFSDDPLRMMRAARFTAQLGLDPVAEVEAAMR-DMA 201
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---------------- 238
+ I+S+ERI E+ KL+ +P I + + + +V
Sbjct: 202 DRIAIISAERIQVELFKLMTGIDPAAGIDLLVRTDVADHVLPEVAGLRLETDEHHRHKDV 261
Query: 239 QEISLDQLSQVIEAEQVFEWK----------------IDSLLRFIVLISWQDKKSILSMA 282
+ SL L Q +E E+ + K D ++RF L+ K +
Sbjct: 262 YQHSLTVLRQAVELEEQYAAKQREAGLSADDPNRLVVPDFVVRFAALMHDVGKPATRRFL 321
Query: 283 KK----------------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LF 317
++ + +
Sbjct: 322 PGGAVTFYHHDAVGAKLTAKRMKALRFDKDTTKAVGRLVELHLRFYGYGDAGWTDSAVRR 381
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI----------LQVLSDIIHWKKPLFPLTG 367
Y+ ++++L I + + ++ LS+ L G
Sbjct: 382 YVTDAGPLLSRLHILTRADVTTRNKKKADRLAFAYDDLEHRIEKLSEQEELAAIRPDLDG 441
Query: 368 DDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++ I P VG H +E + L QE +LR+ A
Sbjct: 442 RQIMTILDIKPSPLVGKAYKHLLEERMEHG-PLGQERAEEVLRQWWAE 488
>gi|51473228|ref|YP_066985.1| NTP polymerase. [Rickettsia typhi str. Wilmington]
gi|51459540|gb|AAU03503.1| NTP polymerase [Rickettsia typhi str. Wilmington]
Length = 387
Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats.
Identities = 129/400 (32%), Positives = 194/400 (48%), Gaps = 23/400 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ IL+LLNK +S ++GG VRD+L+ DIDIAT ++P V+ I SK K
Sbjct: 10 ISSKEYKKILNLLNKKG-QSRLIGGCVRDALLEKDTYDIDIATNLIPSEVINILSKANIK 68
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+IPT + +GTI I + F+ITTLR D+ +GR+AKV+FT+D+ D+ RRDFTINAL
Sbjct: 69 IIPTGLKFGTITAILNNEKFEITTLRKDIECNGRHAKVIFTKDFAEDAARRDFTINALSY 128
Query: 130 DQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
++ DY G DL+ + FIG A +RI EDYLRILRFFRF ++Y + +D D
Sbjct: 129 CPFKNEIYDYFNGFKDLQQAKVVFIGKAFNRIKEDYLRILRFFRFSSYYANQ-LDDDSFK 187
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K GLK LS ERI SEI+K++ +K + M+ GI + IF +Q + +
Sbjct: 188 ACKALKNGLKTLSRERIKSEIDKIIVSKRVTQILEAMFEIGILELIF-SIQNYEIKFFER 246
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ K LL ++ L + + + ++S N + +
Sbjct: 247 ANNFKLELATKYSLLLYNQQNLN-------LKIFLDWKFSKNEAMQILSILNFLNDDEFN 299
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ K L + D + + + P F L G+
Sbjct: 300 IKKIWFE------KKNYKEYLLAACIIG-----KLDYSQVKEFILKYDTLSHPKFELNGN 348
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
D++ I K++G L + K WI F+ S+ +L L
Sbjct: 349 DLLNLNIEK-KEIGAKLEYLKNFWIEHDFKPSKSELLEKL 387
>gi|109521445|ref|YP_655873.1| gp8 [Mycobacterium phage Wildcat]
gi|91980897|gb|ABE67613.1| gp8 [Mycobacterium phage Wildcat]
Length = 401
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 80/392 (20%), Positives = 141/392 (35%), Gaps = 20/392 (5%)
Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGG VRD L+ QDIDIAT P+ I K + + +GT+
Sbjct: 17 HKIYLVGGTVRDMLLGRESQDIDIATDAPPEVSSDILRKWGEEFWDPGVRFGTVCAKKGD 76
Query: 87 KYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV----G 140
+TT R D R+ KV + + D LRRDFTINA+
Sbjct: 77 MEVQVTTFRAAEDYTQGDRHPKVQWGSHIENDLLRRDFTINAIAQHIDPDGHVTWTGRAQ 136
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200
+D+ R ++ + +D LR++R RF A + ++ ++ ++ +
Sbjct: 137 AFSDINRRILRTPINPIKSFTDDPLRLIRAARFQAQLPDFSVATETWEGMESCAPHIRNV 196
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+SERI +E+ K+L A P + + + GI + + + + +
Sbjct: 197 ASERIVAELEKMLLAPQPFKGAILLESTGIAQILLPESAATPI-----------LNTVDA 245
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY-L 319
D +R+ V + + K+ + + + I +
Sbjct: 246 DLDIRWAVWLFTTPWRQAEKALKRLKVDKRTFTRVPRLLRLLEIFHAHEIQDTWSPSKVR 305
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPG 378
L L Y+ + V W + + +G+DV+ GI G
Sbjct: 306 RFKVEAKDDLLAVEHLAYHTTGARRYWLAESVGGASAAWHRYVPQSSGEDVIAALGIAEG 365
Query: 379 KKVGNILVHCKQEWI-NSSFQLSQEDLHHLLR 409
++VG L ++ F E+L L
Sbjct: 366 REVGVCLKQIQERIFREGRFFGKGEELEWLKE 397
>gi|332704141|ref|ZP_08424229.1| Polynucleotide adenylyltransferase region [Desulfovibrio africanus
str. Walvis Bay]
gi|332554290|gb|EGJ51334.1| Polynucleotide adenylyltransferase region [Desulfovibrio africanus
str. Walvis Bay]
Length = 902
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 71/413 (17%), Positives = 134/413 (32%), Gaps = 27/413 (6%)
Query: 13 SDLINIL----SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
D++ IL L ++ + VGG VRD L+ DID+ +
Sbjct: 466 EDILGILTLAGKLADEDGFEVFAVGGFVRDILLRQPNFDIDLVAEGDGIAFAYKLAGVLG 525
Query: 69 KVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + T II + D+ T R + VV K D RRDFTINAL
Sbjct: 526 GRVKAHHKFKTAVIILPNGQRIDVATARLEYYEYPAALPVVELSSIKMDLYRRDFTINAL 585
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHY-GEKNIDS 184
+ + I +ED RILR RF + +
Sbjct: 586 AVHLNPGRFGLLEDFFGAQRDIKDKIIRVLHSLSFVEDPTRILRAIRFEQRFEFRIGGQT 645
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-- 242
+ L+ + + LS RI+ E+ + + +N L + M + + I ++
Sbjct: 646 ERLIRNAVQMTFFQKLSGTRIFHELRLIFDERNALRCLRRMDSFALLTHIHPNLTLDDKL 705
Query: 243 ---LDQLSQVIEAEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
L++L V ++ + ++ + L + ++ +A R+ +
Sbjct: 706 IKYLEELESVRNWYRLLYEEPAAQSWIVYLLGLCGHLPPEELVQIAGNLGFTERQRHDFL 765
Query: 297 SFFNCN-----FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ E Y ++ + + + +A + +
Sbjct: 766 ALRERTGQALGKLINWSQSGEPLSGLYFILHELPVEGVLLLMAKSTRDQVKKAISV---- 821
Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
+ + + G D+ G+ PG G IL I+ + + L
Sbjct: 822 --YLTRLRHIKLEIGGADLRIIGLEPGPAYGRILREVLAARIDGKAECRGDQL 872
>gi|299141232|ref|ZP_07034369.1| polyA polymerase family protein [Prevotella oris C735]
gi|298577192|gb|EFI49061.1| polyA polymerase family protein [Prevotella oris C735]
Length = 483
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 73/479 (15%), Positives = 161/479 (33%), Gaps = 66/479 (13%)
Query: 1 MVSIVQHKW--FHDSDLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M ++ + D+ +++ +K + +VGG VRD + DID+
Sbjct: 1 MRNLTDADLARLLNKDIFHLISEAADKLALECYVVGGYVRDLFLERPSNDIDVVVVGSGI 60
Query: 58 RVMRIFSKTRYKV--IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115
+V + + ++GT ++ + R + + V +
Sbjct: 61 QVASELKNRLGRRAHLSVFRNFGTAQVKYGGMEIEFVGARKESYSHDSRKPHVEDGTLED 120
Query: 116 DSLRRDFTINALYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171
D RRDFTINAL + ++D G+ D+ + I+ D +D LR++R
Sbjct: 121 DQNRRDFTINALAVCLNKEHFGQLVDPFDGVYDMEDGIIRTPLDPDITFSDDPLRMMRCI 180
Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231
RF I+ + A + + +KI+S ERI E+NK++ + P + +Y G+
Sbjct: 181 RFATQLNFF-IEDETFEALQRNAERIKIISGERIDDELNKIMLTQTPSKGFIDLYRCGLL 239
Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFEWKID-------------------SLLRFIVLISW 272
+ I ++ + + + + F ++ LR+ L
Sbjct: 240 QLIIPELVTLDVVETRNGRAHKNNFYHTLEVLDNLCKAQTDNGKLGEMALWLRWSALFHD 299
Query: 273 QDKKSILSMAKKFSLPRE-----------------------IRYFLISFFNCNFNQKTLS 309
K ++ + + ++
Sbjct: 300 IGKPRCKRWDNVIGWSFHNHNYVGAKMIPGIFRRMKLPMDSKMKYVQKMVDLHMRPIVIA 359
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------- 361
E+ + + L ++T ++ + L + ++
Sbjct: 360 DEEVTDSAVRRLMNDAGDDIDDLMMLCEADITSKNQVRKQRFLDNFRIVREKIADLKVRD 419
Query: 362 -----LFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ G+++++ + P ++VG + K +++ + +E L LL K S
Sbjct: 420 YKRLLQPCIDGNEIMEMFHLGPCREVGQLKQTLKDAVLDNKVENEREPLMQLLMKKAKS 478
>gi|317012456|gb|ADU83064.1| putative polynucleotide adenylyltransferase; putative poly(A)
polymerase [Helicobacter pylori Lithuania75]
Length = 402
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 77/403 (19%), Positives = 139/403 (34%), Gaps = 25/403 (6%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + +L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEKELKELFDIYEKSSYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + F+ D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSAHLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N + N+ I+ +G A R ED LRILR RF A+ G K S
Sbjct: 122 IAYSPTKGLIDPFKGQNAIENQMIECVGGARLRFFEDALRILRALRFSANLGFKIAPS-- 179
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + ++ + + L
Sbjct: 180 -----------TKRAVFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVTQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + + LR + P++ C+ +
Sbjct: 229 ENIENLGFLKNAPFNLELR------LLGFLKHQKSLENLRYPKKTCVLFTQAKECHKSFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ +KK L
Sbjct: 283 NIHNKTELKFLLKNYDLEPFNLALDFYALKNLKHALKIKRLLKEIFDSNEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +++G IL C I L L++
Sbjct: 343 GGTLQNLGYQH-QQIGEILNACLNSVIAHPKNN---ALEWLIK 381
>gi|114566944|ref|YP_754098.1| polyA polymerase family protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114337879|gb|ABI68727.1| polyA polymerase family protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 880
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 78/411 (18%), Positives = 160/411 (38%), Gaps = 21/411 (5%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79
+ ++ VGG VRD + + D+D+ + + R ++ + T
Sbjct: 469 EIAESIGSRAYCVGGFVRDFFLRVPNFDVDLVVEGDGEELARKMAQHLGGKARIHQRFRT 528
Query: 80 IKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----K 134
++ DI T R++ V + D RRDFTIN L
Sbjct: 529 AALMLPDGTKIDIATARTEYYEFPAALPKVEKASIREDMYRRDFTINTLAIALNPDSFGD 588
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-GEKNIDSDGLVASIKA 193
+IDY GG DL I+ + + +ED RI+R RF Y D+
Sbjct: 589 LIDYFGGRKDLEKGLIRIL--YNLSFVEDPTRIIRAIRFEQRYKFTIEDDTLRFAKDAIE 646
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-------EISLDQL 246
++ L LS +RI E+ LL +PL A+ + G+++ + ++ I +
Sbjct: 647 RRLLGKLSYKRIIQELMLLLSEIDPLPALDRIMEIGVWEYMIPEIDLNKVSRTMIKRTPI 706
Query: 247 SQVIEAEQVFEWKID-SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
E+ + I L+ F++L++ D++ ++ + K++ L R +
Sbjct: 707 IITWWEERYYGKNIKGWLVYFMLLLAGLDEELVIQIIKRYHLDNYARKAIQESRQVPQIV 766
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ L + + + L L L+ +D ++++ + ++ +
Sbjct: 767 EYLWESREILPGEMDQRLDGWSNESMVLLL----LSIKDELLWEKLVNYLDLKEQVKVEI 822
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G D+ + G+ G + I ++ +N + +E+L +++K I+ +
Sbjct: 823 NGFDLKEMGLKQGPEFRFIFDELYRQKLNGIIKNREEEL-QMVKKWISEGK 872
>gi|294786232|ref|ZP_06751486.1| tRNA adenylyltransferase [Parascardovia denticolens F0305]
gi|294485065|gb|EFG32699.1| tRNA adenylyltransferase [Parascardovia denticolens F0305]
Length = 485
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 82/455 (18%), Positives = 156/455 (34%), Gaps = 63/455 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+++ + ++ +VGG VRD L+ D+D T+ P+ + K
Sbjct: 21 ALDLGEVFSQAGFDLALVGGPVRDLLLGRDPHDLDFCTSAKPEEFEPLLRKWGDGFWDMG 80
Query: 75 ISYGTIKIICR-----KKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+GT+ + + + ++TT RS+ D R +V + + D RRDFT+N++
Sbjct: 81 RKFGTLGTLKKLADGTEVSIEVTTYRSEVYDPDSRKPEVDYGDSLEGDLSRRDFTVNSMA 140
Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ + +D GGL DL R ++ + +D LR++R RF A I D
Sbjct: 141 IRLPEMEFVDVFGGLEDLDRRILRTPVEPEQSFSDDPLRMMRAVRFVAQLDF-RISLDTS 199
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH----------------MYNGGIF 231
A + ++I+S+ER+ E+ KLL + +P + + +
Sbjct: 200 AAIARMADRIEIVSAERVRDELVKLLLSAHPRKGLENLVASGLADYVLPELPALQMEMDP 259
Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM------- 281
+ DV E ++ L + I E E D LR ++ K
Sbjct: 260 QHHHKDVFEHTMKVLERAIALETDAEGPVPAPDLELRLAAVMHDVGKPRTRRFEPDGKVS 319
Query: 282 ---------------AKKFSLPREIRYFLISFFNCNFNQKTL-SIPEIKKLFYLYGDKV- 324
K I + N + P Y
Sbjct: 320 FYHHDAVGAKITKRRLKALHFDHHIVNDVADLVNMHLRFHGYVDEPWSDSAVRRYVKDAG 379
Query: 325 -MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK- 372
+ +L + Q + ++ + L GD +++
Sbjct: 380 PLYHRLNRLTRADATTQNKRKALAFEQAMDELERRVEDLKKKEDFAAIRPDLNGDQIMQI 439
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
G+ PG++VG H + +++ + + L
Sbjct: 440 LGLAPGREVGKAYKHMLEFRMDNGPVDHETAVAEL 474
>gi|78357015|ref|YP_388464.1| hypothetical protein Dde_1972 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219420|gb|ABB38769.1| CBS protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
Length = 898
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 77/407 (18%), Positives = 142/407 (34%), Gaps = 24/407 (5%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
VGG +RD L+ D+D+ R +K I + T +I
Sbjct: 487 GVAVYAVGGFIRDLLLGRPNLDLDLVVEGDGITFARRLAKQLNGRIREHQKFKTAVVIFD 546
Query: 86 KK-----YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----KVI 136
+ D+ T R + V K D RRDFTINAL +++
Sbjct: 547 DENGVESRIDVATARLEYYEYPAALPTVELSSIKMDLFRRDFTINALAVQLNESSFGRLV 606
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK-AKK 195
D+ G D++++ I+ + +ED RILR RF Y +
Sbjct: 607 DFFGSQQDIKDKRIRVLH--SLSFVEDPTRILRAIRFEKRYNFAIGPQTSRLIKNALGLG 664
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----QEISLDQLSQVI 250
++ LS R++ E+ + E +PL M + + + + +E + + +V+
Sbjct: 665 LMEKLSGSRLFHELRLITEEASPLACFKRMEEFDLLRSVHPVLALSYGKEQIIADVEKVL 724
Query: 251 EAEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
++ + + L + + K+ LPR+ +
Sbjct: 725 GWHRLLYQDPAAEAWTVHLLALCHNAKYADVRDLLKRLYLPRKQSRDFMLLRENTREAAA 784
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
L +KK + G ++ L L+ T D V + + ++G
Sbjct: 785 LLSTWLKKDRSMSGLYNILHSLPPEGLLYIMARTRVDEIRKF-VSHYLTKLRDIRTDISG 843
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH---HLLRKL 411
+D+ G PG G +L H ++ + +E L +LR+
Sbjct: 844 EDLQAMGGHPGPCFGKVLNHVLAAKLDGAAHSRKEQLELAHSMLRRY 890
>gi|229495960|ref|ZP_04389684.1| polyA polymerase family protein [Porphyromonas endodontalis ATCC
35406]
gi|229317052|gb|EEN82961.1| polyA polymerase family protein [Porphyromonas endodontalis ATCC
35406]
Length = 475
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 84/448 (18%), Positives = 167/448 (37%), Gaps = 56/448 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTSI 75
I ++ ++ +VGG VRD L++ + DID+ + + R F+K + +
Sbjct: 19 ISEAADELGVEAYVVGGYVRDLLLHRTTGDIDVVSVGRGIDLARAFAKKWGRGAHLSVFA 78
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
++GT ++ + R + +V + D RRDFTINA+ +
Sbjct: 79 NFGTAQVKKGGIEVEFVGARRESYRRDSRKPIVEDGTLEEDQERRDFTINAMALCLNKER 138
Query: 136 I----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
D GL DL + ++ D +D LR+LR RF + G +D + A
Sbjct: 139 FGELVDPFYGLEDLEDCLLRTPLDPDVTFSDDPLRMLRGIRFASQLGFF-LDEETFEAIE 197
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-------- 243
+ + ++I+S+ERI E+NK++ + P + + G+ I +V +
Sbjct: 198 RNAERIQIVSAERIIVELNKIMLSPKPSIGLELLEKTGLMALILPEVLALKGAETRDGIG 257
Query: 244 --DQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMA----KKFSLPREI-RYFL 295
D L+ + K D+L LR+ L+ K F I +
Sbjct: 258 HKDNLTHTYKVVDNLAAKSDNLYLRWAALLHDVAKPQTKRFDRALGWTFHNHNYIGAKMV 317
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AKLKIFLALHY 337
F S+ + K+ L+ + + + L
Sbjct: 318 PKMFRRLKLPLDASMKYVAKMVELHMRPAALVDEGVTDSAVRRLLFEAGDDIDDLMLLVE 377
Query: 338 NNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVKY-GIPPGKKVGN 383
++T ++ + + L + + P++G+++++ G+PP + VG
Sbjct: 378 ADITSKNPQKVRRYLDNYVVVRRKLHEIEEKDRIRNFQPPISGEEIMELFGLPPSRPVGT 437
Query: 384 ILVHCKQEWINSSFQLSQEDL-HHLLRK 410
+ K ++ + +LL+K
Sbjct: 438 LKEAIKNAILDGVIPNEYDAAYDYLLKK 465
>gi|19703588|ref|NP_603150.1| Poly(A) polymerase [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19713690|gb|AAL94449.1| Poly(A) polymerase [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 451
Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats.
Identities = 96/437 (21%), Positives = 177/437 (40%), Gaps = 49/437 (11%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
IL+ LN+ K IVGGA+RD L+ L +D+D T + + + ++FS+ K S+
Sbjct: 16 ILNKLNEYG-KGYIVGGAIRDILLGLKPKDVDFTTNLPYETLKKLFSEYNLK--EIGKSF 72
Query: 78 GTIKIICRKKYFDITTLRSDLIT-------DGRYAKVVFTRDWKADSLRRDFTINALYAD 130
G ++I ++I R D KV F D K D RRDFTINA+ +
Sbjct: 73 GVLRIKINDIDYEIAKFREDNYEEKDGLKIIPEGKKVSFVDDIKNDLTRRDFTINAMAYN 132
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++D G D+ N+ I FIG+A RI+ED LR+LR FRF + ++ D + A
Sbjct: 133 EVEGIVDLYNGQKDIENKVINFIGNAEERIIEDPLRVLRAFRFMSRLDF-SLSEDTIEAI 191
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
K LK + E+I E +KLL KN N + M + G+ + I + + +
Sbjct: 192 KNQKNLLKNIPEEKITMEFSKLLLGKNIRNTLTLMKDTGVLELIIPEFKATYDFEQCNPH 251
Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQ----------------------DKKSILS 280
+F D L++ L+
Sbjct: 252 HNLDLFNHIISVVSKVPADLELKYSALLHDIAKPVVQTFDEKGIAHYKTHEIVGADMARD 311
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ + LP ++ + + K ++ + KL G + ++ +A + +
Sbjct: 312 ILTRLKLPVKLIETVAEIIKKHMVLYKDVTDKKFNKLLSEMGYDNLWRLIEHCIADNESK 371
Query: 340 LTHQDT------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
+ + + + + + G D+++ G G ++G I +++
Sbjct: 372 NNEVVSTENDLHEKLKRAVEKQMQITVNDLAVNGKDLIELGFI-GSEIGKIKEELLDKYL 430
Query: 394 NSSFQLSQEDLHHLLRK 410
+ Q +E++ +++
Sbjct: 431 SEEVQNEKEEMLEYVKE 447
>gi|332673488|gb|AEE70305.1| poly(A) polymerase [Helicobacter pylori 83]
Length = 407
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 84/403 (20%), Positives = 143/403 (35%), Gaps = 22/403 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ D +L + + K K +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELDKELQELFDIYEKSSYKLYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + F+ D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N + N+ I+ +G+A R ED LRILR RF A G K S
Sbjct: 122 IAYSPTKGIIDPFKGQNAIENQIIECVGEARLRFFEDALRILRALRFSATLGFKIAPSTK 181
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
I + + G E+ + QEI
Sbjct: 182 REIFACKYLLKHISKERLQSE--------------LNKLLMGKNAYEVAKEYQEI----- 222
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+++ E++ F + + + P++ + C
Sbjct: 223 LELVTQEKIENLGFLKNAPFNLELRLLGFLKHQKSLENLRYPKKTCVLFLKAKECYKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ + +KK L
Sbjct: 283 NIHNKTELKFLLKNYDLEPFNLTLDFYALKNPKRALKIKTLLKEISNANEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +++G IL C I S E L ++
Sbjct: 343 GGTLQNLGYQR-QQIGEILNACLSLVIAHPKNNSLEWLIKWVK 384
>gi|323141323|ref|ZP_08076218.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Phascolarctobacterium sp. YIT 12067]
gi|322414210|gb|EFY05034.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Phascolarctobacterium sp. YIT 12067]
Length = 506
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 88/479 (18%), Positives = 171/479 (35%), Gaps = 91/479 (18%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP-TS 74
ILS LN ++ +VGGAVRD L+ S D DI T LP++V+ + + +K +
Sbjct: 11 KKILSALNAAGYEAYLVGGAVRDLLLGKSPDDYDITTNALPEQVLAVCKQQDWKTVDQLG 70
Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT---DGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
++G + I+ ++TT R + R A F + D RRDFT+NA+
Sbjct: 71 HNFGCVVIVINGVATEVTTFRGERYNDEDMHRPAATWFCSSLREDLSRRDFTVNAMALSL 130
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE------------ 179
G + DY GG DL+ + ++ +GDA R ED LR+LR RF A G
Sbjct: 131 NGTLYDYFGGQQDLQQKILRTVGDAKQRFHEDALRMLRACRFVAQLGFTYEQAGCETLPA 190
Query: 180 ---KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
N + LS ER+ E+ KL+ ++ ++ M G+
Sbjct: 191 CGAPNTPYYLPHGYSFPVERCAGLSLERVRKELEKLITSEYAGKGLMLMMATGLLGANCH 250
Query: 237 DVQEISLDQLSQVIEAEQVFEW----------------------KIDSLLRFIVLISWQD 274
+ S + + EA + D +R+ +++
Sbjct: 251 ARENGSDTIIPILPEALHLLGLHQNPRFHLYDTWEHTLLAIDNSPHDLAIRWALVLHDLG 310
Query: 275 K------------------------KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
K ++ + + + + + + +
Sbjct: 311 KGLPNVRKLNKEGQPSDPGHEAESAIMAKAILTRLGYNKSFVHLVTWLVAQHMRFAPMLL 370
Query: 311 PEIKKLFYLYGDKVMIA--------------KLKIFLALHYNNLTHQDT------CFILQ 350
+ L + + +++FLA ++ + +
Sbjct: 371 TGERTLLRWVRSEAANSGFRTQAELTQAYSLLVEVFLADMGATHARENEQLMAEGRLLGR 430
Query: 351 VLSDIIHWKKPL----FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+ +++ + P+ ++G ++++ IP + NIL + + + + +E L
Sbjct: 431 QVVELVRTRMPVCTKDLAVSGRELLEL-IPR-ADIKNILFYLLERVQSGNLPNEKEALL 487
>gi|154508262|ref|ZP_02043904.1| hypothetical protein ACTODO_00758 [Actinomyces odontolyticus ATCC
17982]
gi|293191173|ref|ZP_06609106.1| tRNA adenylyltransferase [Actinomyces odontolyticus F0309]
gi|153797896|gb|EDN80316.1| hypothetical protein ACTODO_00758 [Actinomyces odontolyticus ATCC
17982]
gi|292820594|gb|EFF79563.1| tRNA adenylyltransferase [Actinomyces odontolyticus F0309]
Length = 509
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 85/454 (18%), Positives = 163/454 (35%), Gaps = 58/454 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++ + ++ ++ ++ +VGG VRD+ + ++ D D+ T+ P+R + ++
Sbjct: 13 PAIMELGTIFDEAGEELALVGGPVRDAFLGVTPHDFDMTTSARPERTEELLAQWGNATWD 72
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130
+GTI ++TT R+D G R +V F + D RRDFT+NA+
Sbjct: 73 IGKEFGTIGGRRGDLVVEVTTYRTDEYEIGSRKPEVTFGDTLEGDLTRRDFTVNAMAMRL 132
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
Q ++D GGL DL + ++ A +D LRI+R RF A G ++D D + A
Sbjct: 133 PQMALVDPCGGLADLADGNLRTPVSAEQSFDDDPLRIMRAARFSAQLG-LDVDMDVMNAM 191
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD------------- 237
L+I+S+ERI +E+ +L+ + P I M + G+ + +
Sbjct: 192 ETMASRLEIVSAERIRAELERLIISPYPRRGIELMVHTGVADIVLPEVAGLVSTVDEHKR 251
Query: 238 ---VQEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKK--------------- 276
V E +L + Q ++ E + D +LRF L+ K
Sbjct: 252 HKDVYEHTLTVVEQAMDLETGPDGAVPAPDFILRFAALMHDVGKPATRRFEPNGTVSFHH 311
Query: 277 -------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326
K + + + + Y+ ++
Sbjct: 312 HEIVGAKMTRKRMKALHFDKATIEAVSNLVALHLRFHGYGEAAWSDSAVRRYVADAGDLL 371
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK-YGI 375
+L + ++ D+ L GD +++ G+
Sbjct: 372 ERLHRLTRADCTTRNRRKANYLSAAYDDLETRIAALREQEELDAIRPDLDGDQIMEILGL 431
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
P + V + + + + LL
Sbjct: 432 RPSRAVKIARDYLLELRMERGPLGEEAARQALLD 465
>gi|229160586|ref|ZP_04288581.1| CCA-adding enzyme [Bacillus cereus R309803]
gi|228622996|gb|EEK79827.1| CCA-adding enzyme [Bacillus cereus R309803]
Length = 370
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 83/376 (22%), Positives = 162/376 (43%), Gaps = 15/376 (3%)
Query: 37 RDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRS 96
RD +++ + DIDIAT+ LP+ VM IF + +P + +GT+ ++ + +++TT R+
Sbjct: 2 RDLIIDRPIGDIDIATSALPEEVMGIFPRH----VPVGLEHGTVIVVENGEPYEVTTFRT 57
Query: 97 --DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIG 154
+ R + V F R + D RRDFT+NA+ ++G+++D G ++ + I +G
Sbjct: 58 ESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGEMVDLFAGQEAIQKKEIVTVG 117
Query: 155 DAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214
+A R ED LR++R RF + G +++ A L+ ++ ERI E KLL
Sbjct: 118 NAADRFQEDALRMMRGIRFVSTLGF-ALETKTKQAIEAYGHLLEHIAIERITVEFEKLLT 176
Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274
+ + + +F L ++S ++L + + E F + ++
Sbjct: 177 GTYCVKGLQELVETKLF--SHLPYLQMSEERLLKATQYEWDSFETDIEAWAFFLYCIGEE 234
Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
S+ KFS + I +K L Y G + +++ A
Sbjct: 235 HPSVFLRQWKFSNKKIKDIVAILLAIRTRKEKDWDTV----LLYKTGIHIAEMAERVYEA 290
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWI 393
+ + + + + + +TG+D++ + PG V IL ++ I
Sbjct: 291 M-IESYDRTAVKRVQTLFQTLPIKSRQEMNVTGNDLLNWANKNPGPWVAEILQKIEEAII 349
Query: 394 NSSFQLSQEDLHHLLR 409
+ +E + L+
Sbjct: 350 QGNVVNEKERIREWLQ 365
>gi|299136118|ref|ZP_07029302.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acidobacterium sp. MP5ACTX8]
gi|298602242|gb|EFI58396.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acidobacterium sp. MP5ACTX8]
Length = 461
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 90/451 (19%), Positives = 157/451 (34%), Gaps = 60/451 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I L + + GG VRD L+ + D D+AT+ PD+V F +T
Sbjct: 10 EAALTIARRLRELGHAAYFAGGCVRDLLLGVDPHDFDVATSATPDQVQAAFPRTE----S 65
Query: 73 TSISYGTIKIIC----RKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINA 126
+G + +I + ++ T R+D +DGR V F+ D + D LRRDFTIN
Sbjct: 66 VGAHFGVVLVIELVHGERTATEVATFRNDGAYSDGRRPDAVRFSLDPREDVLRRDFTING 125
Query: 127 LYADQ---------QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
L D Q V D+VGG DL + ++ IG+A R ED LR+LR RF A
Sbjct: 126 LLLDVIDYEEGDRLQDCVRDFVGGQIDLEWKLVRAIGNAATRFAEDKLRMLRAIRFAARL 185
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
I+S + A + +S+ER+ E+ K+L + G+ +E+ +
Sbjct: 186 DF-AIESRTMAAIQEQAVTTTQVSAERVRDELTKILTEGGARRGFELLEESGLLREVLPE 244
Query: 238 VQEISL-----------DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----- 281
V + D + + L + +L+ K + +
Sbjct: 245 VARMKGVAQPPQYHPEGDVWTHTLMLLGHLPKAASPTLAWGMLLHDVGKPATFTPPDPAR 304
Query: 282 ---------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+ + +++ + + + L
Sbjct: 305 PGDRIRFNGHVEIGVAVARTILLRLRFSNDDMEQILALIKHHMQFGDVMKMKQSTLKRFL 364
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSDI-IHWKKPLFPLTGDDVVKYGIPPG 378
L + A ++ Q ++ KP L G+ ++ G PG
Sbjct: 365 RLPKFDEHLALHRADSLSSHGALGMYDFAKQHFDEMGEEQIKPRLLLDGEALIAAGYKPG 424
Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+LV + + + E +
Sbjct: 425 PGFREMLVAAEDAQLEG-VVTTPEAALRFVE 454
>gi|332293599|ref|YP_004432208.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Krokinobacter diaphorus 4H-3-7-5]
gi|332171685|gb|AEE20940.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Krokinobacter diaphorus 4H-3-7-5]
Length = 471
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 81/464 (17%), Positives = 168/464 (36%), Gaps = 62/464 (13%)
Query: 10 FHDSDLINILSLLNKGED----KSCIVGGAVRDSLM--NLSVQDIDIATTILPDRVMRIF 63
++ + I + ++ D ++ ++GG VRD L+ N V+DID+ + R
Sbjct: 3 LKNALSLPIFNNISNAADALELETYVIGGFVRDYLLKRNKEVKDIDVVAVGSGIALARKV 62
Query: 64 SKT--RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
S+ + +YGT + + R + VV + D RRD
Sbjct: 63 SQILPNKPKVQVFKTYGTAMLRSGNMDIEFVGARKESYATESRNPVVEDGTLEDDQNRRD 122
Query: 122 FTINALYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
FTINAL VID G++DL + I+ D +D LR++R RF +
Sbjct: 123 FTINALAIKLNDNGYGDVIDPFNGISDLERKIIRTPLDPDITYSDDPLRMMRAIRFASQL 182
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
I+ L + K + +KI+++ERI E+NK++ + P + + G+ I +
Sbjct: 183 DFM-IERTSLESITKNAERIKIITNERIVDELNKIMLSPTPSKGFLLLEKTGLLPYILPE 241
Query: 238 V-----------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286
+ Q+ + + + + E D LR+ L+ K +KK
Sbjct: 242 LMALKGIDEIEGQKHKDNFYHTLEVVDNISEHTDDLWLRWAALLHDIGKAPTKKFSKKVG 301
Query: 287 LP-----------------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
+ F+ + +S +
Sbjct: 302 WTFHGHEFVGSKMVYKLFKRLKMPLNDKMKFVQKMVLMSSRPIVISEDHVTDSAVRRLIF 361
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDV 370
++ + L ++T ++ + ++ H + P++G+++
Sbjct: 362 DAGDHIEDLMTLCEADITTKNPKRFKRYHNNFKVVREKMKEVEERDHVRNFQPPVSGEEI 421
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL-LRKLI 412
++ + + PG+++G + K+ + +E ++K
Sbjct: 422 MEAFNLKPGREIGILKEAIKEAILEGEIPNEKEAAIAFMIKKAK 465
>gi|315586679|gb|ADU41060.1| poly(A) polymerase [Helicobacter pylori 35A]
Length = 407
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 75/403 (18%), Positives = 141/403 (34%), Gaps = 22/403 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + +L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEKELQELFGIYEKSPYELYLVGGCVRDCLMGIAPKDYDLTSNALVNESKELLLKHHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--ADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + + D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N + N+ I+ +G+A R ED LRILR RF A G K +
Sbjct: 122 IAYSPTKGIIDPFKGQNAIENQMIECVGEARLRFFEDALRILRALRFSATLGFKIV---- 177
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + ++ + + L
Sbjct: 178 ---------LSTKEAVFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVTQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + + LR + P++ + C+
Sbjct: 229 EKIENLGFLKNAPFNLELR------LLGFFKHQKSLENLRYPKKTCVLFLKAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K + F AL + + ++ + +KK L
Sbjct: 283 NIHNKTELKFLLKNYNLEPFNLALDFYALKNPKRALKIKGLLKEIFNANEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +++G IL C I S E L ++
Sbjct: 343 GGTLQNLGYQH-QQIGEILNACLNLVIAHPENNSLEWLIKWVK 384
>gi|15645264|ref|NP_207434.1| poly(A) polymerase (papS) [Helicobacter pylori 26695]
gi|2313761|gb|AAD07702.1| poly(A) polymerase (papS) [Helicobacter pylori 26695]
Length = 402
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 80/403 (19%), Positives = 141/403 (34%), Gaps = 25/403 (6%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEEGLKELFDIYEKSSHELYLVGGCVRDYLMGITPKDYDLTSNALVNESKELLLKRHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + F+ D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSVHLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N + N+ I+ +G+A R ED LRILR RF A G K +
Sbjct: 122 IAYSPTKGLIDPFKGQNAIENQMIECVGEARLRFFEDALRILRSLRFSATLGFKIAPNTK 181
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + + G E+ + QEI
Sbjct: 182 EAVFACKDLLKHLSKERLQSE--------------LNKLLMGKNAYEVAKEYQEI----- 222
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+++ E++ F + + + P++ C+ +
Sbjct: 223 LELVIQEKIENLGFLKNAPFNLELRLLGFFKHQKSLESLRYPKKTIVLFSKAKECHKSFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ +KK L
Sbjct: 283 NIHNKTELKFLLKNYDLEPFNLALDFYALKNPKHALKIKGLLKEIFDSNEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +K+G IL C I + L L+
Sbjct: 343 GGALQSLGYQH-QKIGEILNACLDLVIANPKNN---ALEWLIE 381
>gi|218284035|ref|ZP_03489872.1| hypothetical protein EUBIFOR_02475 [Eubacterium biforme DSM 3989]
gi|218215454|gb|EEC88992.1| hypothetical protein EUBIFOR_02475 [Eubacterium biforme DSM 3989]
Length = 438
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 80/434 (18%), Positives = 158/434 (36%), Gaps = 44/434 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ I+ +N ++ +VGG VRD L++ + D DI T+ P+ ++ +F + + T
Sbjct: 7 ILEIIQKINDIGYEAYVVGGCVRDYLLDRPIHDYDICTSAKPEVILNLFD----RSVGTG 62
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYADQQ 132
+ +GT+ ++ +ITT R + + + D RRDFT+NA+
Sbjct: 63 LKHGTVTVLSNS-PVEITTFRLESEYKDHRHPDSVKYVSTIEEDLSRRDFTVNAMAYHPN 121
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ID G DL+ + I+ +G+ R ED LR+LR +RF A G ++
Sbjct: 122 RGLIDPYKGQFDLKAKVIRCVGNPDRRFNEDALRMLRAYRFCAKLGFSMDETVKKSIDTN 181
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK-----EIFLDVQEISLDQLS 247
A + + + L ++ + + + D L
Sbjct: 182 ATLIQYVSIERIVHELKEIMETNPQVLASMTLLLKPVFNELDLALRCSQNSIYHYTDVLH 241
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------------------AKKF 285
++A D L F++L K + + ++F
Sbjct: 242 HTLDAMCYL-KPYDETLAFVLLFHDLGKIQVKTTDSNGKDHFKHHAKVGSELSKELCRRF 300
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLF--YLYGDKVMIAKLKIFLALHYN----- 338
L E R ++ + + ++ T + I K Y ++ ++ L+I
Sbjct: 301 KLTNEQRKWIPFYVLHHDDKFTCDLDCIYKYRVTYHLDEEHLLNLLQIRYCDAMAHSELG 360
Query: 339 NLTHQDTCFILQVL--SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
+ +D + L G D+++ GK++ L C +
Sbjct: 361 QKSAKDVELFYDYYIQNRNRCMSISQLALNGKDIIEATNLRGKQIQEALNMCLKYAFYHP 420
Query: 397 FQLSQEDLHHLLRK 410
+ + DL +RK
Sbjct: 421 EKNHKIDLIEYIRK 434
>gi|317503931|ref|ZP_07961939.1| polyA polymerase family protein [Prevotella salivae DSM 15606]
gi|315664957|gb|EFV04616.1| polyA polymerase family protein [Prevotella salivae DSM 15606]
Length = 483
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 78/473 (16%), Positives = 160/473 (33%), Gaps = 66/473 (13%)
Query: 1 MVSIVQHKW--FHDSDLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M ++ + D+ +++ +K + +VGG VRD + DID+
Sbjct: 1 MRNLTDADLARLLNKDIFHLISEAADKLSLECYVVGGYVRDLFLERPSNDIDVVVVGSGI 60
Query: 58 RVMRIFSKTRYKV--IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115
+V K + ++GT ++ + R + + V +
Sbjct: 61 QVASELKSRLGKRAHLSVFRNFGTAQVKFHGMEIEFVGARKESYSHDSRKPHVEDGTLED 120
Query: 116 DSLRRDFTINALYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171
D RRDFTINAL + D G+ D+ + I+ D +D LR+LR
Sbjct: 121 DQNRRDFTINALAVCLNKERFGQLVDPFEGVYDMEDGIIRTPLDPDVTFSDDPLRMLRCI 180
Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231
RF I+ + A + + +KI+S ERI E+NK++ K P + +Y G+
Sbjct: 181 RFATQLNFF-IEDETFEALQRNAERIKIISGERIDDELNKIMLTKTPSKGFIDLYRCGLL 239
Query: 232 KEIFLDV-----------------QEISLDQLSQVIEAEQVFEWK--IDSLLRFIVLISW 272
+ I ++ +L+ L + A+ + LR+ L
Sbjct: 240 QLIIPELVTLDVVETRNGRAHKNNFYHTLEVLDNLCRAQDESGKHDEMSLWLRWAALFHD 299
Query: 273 QDKKSILSMA----KKFSLPREI-------------------RYFLISFFNCNFNQKTLS 309
K F + F+ + + ++
Sbjct: 300 IGKPRCKRWDNLNGWTFHNHNYVGAKMVPAIFRRMKLPMDNKMRFVQKMVDLHMRPIAIA 359
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------- 361
E+ + + L ++T ++ + L + ++
Sbjct: 360 DEEVTDSAVRRLMNDAGDDIDALMMLCEADITSKNQVRKQRFLDNFRIVREKIADLKVRD 419
Query: 362 -----LFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G+++++ + P ++VG + K +++ + +E L LL
Sbjct: 420 YKRLLQPCIDGNEIMEMFHLGPCREVGQLKQTLKDAVLDNKVENEREPLMKLL 472
>gi|225024314|ref|ZP_03713506.1| hypothetical protein EIKCOROL_01189 [Eikenella corrodens ATCC
23834]
gi|224942899|gb|EEG24108.1| hypothetical protein EIKCOROL_01189 [Eikenella corrodens ATCC
23834]
Length = 457
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 72/387 (18%), Positives = 131/387 (33%), Gaps = 42/387 (10%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++S L + ++ +VGGAVRD L+ + +D D+AT P+ V ++F ++R
Sbjct: 41 AAEKVVSRLQQAGFEAYVVGGAVRDLLLGIEPKDFDVATNARPEEVRKVFRRSRI----I 96
Query: 74 SISYGTIKIICRKKYFDITTLRS-----DLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + ++ + ++TT R GR + + D+ RRDFT NALY
Sbjct: 97 GRRFQIVHVMVGPETIEVTTFRGGGSPARQNEHGRIMQDNSYGSMEQDAARRDFTCNALY 156
Query: 129 ADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ I D+ G+ D+R + + IGDA R ED +R+LR R G + + D
Sbjct: 157 YNPARGEITDFHHGVADIRAKRLVMIGDARARYQEDPVRMLRAARLSGKLGFQ-VAPDTA 215
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ L R++ E+ KLL + ++ + M G+ + + +L++L
Sbjct: 216 APIAECLHLLPKEPLARLFDEVMKLLFSGAAIDCLKQMQALGMDGQSVHPLLACALERLP 275
Query: 248 ----------QVIEAEQVFE---------------WKIDSLLRFIVLISWQDKKSILSMA 282
+ + W S LS A
Sbjct: 276 ENQGRGIVVLALNSTDSRLRADQGVSVGFVLAAVLWPQVREAWQRAQSSGLRTMPALSAA 335
Query: 283 KKFSLPREIRYFLIS------FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
+ + + + Q + F L A L
Sbjct: 336 VAETRANMEKGWGVPHRFTASMREIWQLQPQFEHRRGARPFRLLAQPRFRAAYDFLLLRA 395
Query: 337 YNNLTHQDTCFILQVLSDIIHWKKPLF 363
Q + ++
Sbjct: 396 RAGEVEQGIADWWTAFQEADEEQRKQM 422
>gi|148274148|ref|YP_001223709.1| putative RNA nucleotidyltransferase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147832078|emb|CAN03051.1| putative RNA nucleotidyltransferase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 476
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 82/458 (17%), Positives = 163/458 (35%), Gaps = 61/458 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ + +VGG VRD+ + + D+D+ T PDR++ I
Sbjct: 17 SPPVAVLARAFHEAGHELALVGGPVRDAFLGRAATDLDLTTDARPDRILEIVKPVADAHW 76
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD 130
++GTI + + +ITT R+D R +V F + D +RRDFT+NAL
Sbjct: 77 DIGRAFGTIGARVKGEQVEITTYRTDQYDGVSRKPEVEFGSSLEEDLVRRDFTVNALAVR 136
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
Q ++D GG++DL + ++ +D LR++R RF + G +D L A
Sbjct: 137 LPQVVLVDPSGGIDDLLAQVLRTPVAPEVSFGDDPLRMMRAVRFASQLGF-RLDDAALAA 195
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ---- 245
+ +S ER+ E++KLL P + + GG+ + ++ + L+
Sbjct: 196 IRDMAPRILDISVERVSDELSKLLRTPEPRAGLDLLVEGGLADHVLPELPAMKLEADEHH 255
Query: 246 ------LSQVIEAEQVFEWK--------IDSLLRFIVLISWQDKK--------------- 276
+ +Q + + D +LR L+ K
Sbjct: 256 RHKDVYQHSLQVLDQAIDHERSRHPGEAPDLVLRLAALLHDIGKPSTRRLEPGGVVTFHH 315
Query: 277 -------SILSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKV 324
+ + + + + + +++ G ++
Sbjct: 316 HDVVGSKMAKRRLRALRFDNDTIASVARLIELHLRFFGYTEGGWTDSAVRRYVRDAGPEL 375
Query: 325 MIAKLKIFLALHYNNLTHQDT--------CFILQVLSDIIHWKKPLFPLTGDDVVK-YGI 375
+ + N D + L++ L G+ +++ +
Sbjct: 376 ERLHMLTRADVTTQNRRKADRLGFAYDDLEARIAELAEQEEMAAVRPDLDGEAIMRILDV 435
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
PPG VG + ++ L E+ R+L+A
Sbjct: 436 PPGPVVGRAYRFLLELRLDEG-PLPAEEAE---RRLVA 469
>gi|77918901|ref|YP_356716.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pelobacter
carbinolicus DSM 2380]
gi|77544984|gb|ABA88546.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pelobacter
carbinolicus DSM 2380]
Length = 888
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 84/425 (19%), Positives = 150/425 (35%), Gaps = 23/425 (5%)
Query: 12 DSDLINILSLLNKGED----KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
L LS + D +VGG VRD L+ D+DI +++
Sbjct: 462 RDSLQKTLSTIGAVGDALGRSVFVVGGFVRDLLLRQENFDVDIVVEGDGIAFAEEYARRY 521
Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + T +I D+ + R++ + V K D RRDFTIN
Sbjct: 522 DCRVRAHKKFATAVLIFADGFKVDVASARTEYYLEPGALPTVENASIKLDLYRRDFTINT 581
Query: 127 LYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L G+++DY GG NDLR + I+ + + +ED R+ R RF G +
Sbjct: 582 LAIALNGPHFGELLDYFGGQNDLRGKAIRVLH--NLSFVEDPTRMFRAIRFEQRLGFQMG 639
Query: 183 DSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ + G +S R+++E+ + +PL A+ + G+ I +
Sbjct: 640 RHTVHLLKSAVRMGFLDKISGPRVFNELVLIFRESDPLPAMRRLDELGLLAFIHPTLSVR 699
Query: 242 SL--------DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
L Q E E + F+ L+S D + + ++ ++P +
Sbjct: 700 HLSDGTFAAAKQAVDWYELLYTGERCQRWKVFFLCLLSDLDHGEVQQIVQRLAMPPQCEE 759
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF--LALHYNNLTHQDTCFILQV 351
F S + + Y + D + A LK AL Y + +
Sbjct: 760 FFGSERDAATRILNQIEWRSMQS-YRWRDSDIHALLKDLPVEALLYGMAITEHEEARRTI 818
Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
I H + L G D+ G+ PG I ++ +++L + +
Sbjct: 819 SHFITHLRHVKCLLRGHDLQSLGLAPGPIYREIFDALLDVRLDGQVVTREDELQFVTNRY 878
Query: 412 IASSQ 416
+ +
Sbjct: 879 VEKIE 883
>gi|332886436|gb|EGK06680.1| hypothetical protein HMPREF9456_00554 [Dysgonomonas mossii DSM
22836]
Length = 478
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 80/452 (17%), Positives = 166/452 (36%), Gaps = 59/452 (13%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTSI 75
I + ++ + +GG VRD + + +DIDI T + + +K + +
Sbjct: 22 ISRVADEMNLECYAIGGYVRDIFLRRASKDIDIVTIGKGIELAQAVTKALGRKAKLSVFK 81
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-- 133
++GT +I + + R + +V + D RRDFTINAL
Sbjct: 82 NFGTAQIKYKDTEIEFVGARKESYNRDSRKPIVEDGTLEDDQNRRDFTINALAICLNKDR 141
Query: 134 --KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+++D GGL D+ + TI+ D +D LR+LR RF + G +I+ A
Sbjct: 142 FGELLDPFGGLKDMDSLTIRTPLDPDITFSDDPLRMLRAIRFSSQLGF-DIEPKTFDAIS 200
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------- 241
+ K ++I+S ERI E+NK++ + P + + G+ IF ++ +
Sbjct: 201 RNKDRIEIISRERIIDEVNKIVLSPKPSVGFLQLDQTGLLSIIFPELVALKGAETKEGVG 260
Query: 242 -SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP------------ 288
+ ++ + + + + LR+ ++ K + KF
Sbjct: 261 HKDNFYHTLVVLDNISKKTDNLWLRWSAILHDIAKPATKRWDNKFGWTFHNHNFIGEKMI 320
Query: 289 -----------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
E ++ + + L EI + + L
Sbjct: 321 PGIFRRMKLPLNEKMKYVQKMVTLHMRPQVLVDEEISDSAVRRLLFEAGDDIDDLMTLCE 380
Query: 338 NNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY-GIPPGKKVGN 383
++T ++ + + L + ++ P+ G+++++ G+ PG +VG
Sbjct: 381 ADITSKNPDKVRRYLRNFEIVRQKLKDIEEKDQVRNFQPPIKGEEIMEMFGLGPGVEVGR 440
Query: 384 ILVHCKQEWINSSFQLSQED----LHHLLRKL 411
+ K ++ + L +K+
Sbjct: 441 LKASIKDAILDGVIPNEYDAAYNYLIEKAKKI 472
>gi|58699739|ref|ZP_00374391.1| polynucleotide adenylyltransferase [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58533745|gb|EAL58092.1| polynucleotide adenylyltransferase [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 246
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 96/225 (42%), Positives = 138/225 (61%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + I+ + + ++ +VGG VRDS++ V DID+AT +LP++ ++ K I
Sbjct: 4 DQETSLIIDAIEEFGGEARLVGGCVRDSILQRDVHDIDLATNLLPNQTIKALKLRNIKTI 63
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
PT +++GTI I ++ F+ITTLR D+ DGR+AKV FT +W+AD+ RRDFT NALYAD+
Sbjct: 64 PTGLNHGTITAILNQRSFEITTLRHDVKCDGRHAKVEFTNNWQADASRRDFTFNALYADK 123
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G + DY GG+ DL+ R + FIG+A RI EDYLRILR FRF A ++ + L
Sbjct: 124 HGHIYDYFGGIEDLKARRLNFIGNAEDRIKEDYLRILRAFRFHAKICVGDLSDEILNVCK 183
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
K ++ LS ERI EI KLLE +P + M + ++I
Sbjct: 184 KHSHMIQNLSGERIRDEILKLLECNDPFPTLKSMQESDVLQKIIP 228
>gi|281422478|ref|ZP_06253477.1| polyA polymerase family protein [Prevotella copri DSM 18205]
gi|281403461|gb|EFB34141.1| polyA polymerase family protein [Prevotella copri DSM 18205]
Length = 480
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 72/448 (16%), Positives = 154/448 (34%), Gaps = 55/448 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + + +VGG VRD + DID+ V K + +
Sbjct: 20 KISEAADGLSVECYVVGGYVRDLFLERPSNDIDVVVVGSGIEVASALKKMLGRKAHLSVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133
++GT ++ + + R + +V + D RRDFTINA+
Sbjct: 80 RNFGTAQVKYQDTEVEFVGARKESYQHDSRKPIVEDGTLEDDQNRRDFTINAMAICLNKD 139
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D G+ D+ + I D +D LR++R RF + I+ + A
Sbjct: 140 RFGELVDPFDGVYDMEDGIIATPLDPDITFSDDPLRMMRCVRFATQLNFQ-IEEETYDAL 198
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ-- 248
+ + LKI+S+ERI E+NK++ +K+P + ++ + G+ I ++ + +
Sbjct: 199 SRNAERLKIISAERICDEMNKIMLSKHPSSGFYYLKDTGLLDLILPELIAMDKVETRNGR 258
Query: 249 ---------VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL------------ 287
+ E V + + LR+ L K
Sbjct: 259 AHKNNYDHTMEVLENVCKHSDNLWLRWAALFHDIGKPKSKRWDNNIGWTFHSHNIIGAKM 318
Query: 288 -----------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
++ + ++ E+ + + L
Sbjct: 319 IPGIFRRMKLPMDAKMKYVQKLVELHMRPIVIADEEVTDSAVRRLLNDAGDDINDLMTLC 378
Query: 337 YNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY-GIPPGKKVG 382
++T ++ + L + ++ + G+++++ + P ++VG
Sbjct: 379 EADITSKNQVRKQRFLDNFKMVREKLVDLQERDYKRLLQPCIDGNEIMEMFHLTPCREVG 438
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + K +++ +E L LL K
Sbjct: 439 TLKQYLKDAVLDNKVANEREPLMELLMK 466
>gi|298207805|ref|YP_003715984.1| tRNA nucleotidyltransferase [Croceibacter atlanticus HTCC2559]
gi|83850443|gb|EAP88311.1| tRNA nucleotidyltransferase [Croceibacter atlanticus HTCC2559]
Length = 477
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 78/453 (17%), Positives = 152/453 (33%), Gaps = 56/453 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKT-- 66
I + + S ++GG VRD L+ + +DID+ T + + +
Sbjct: 13 LTHPVFKTIATASEELGLSSYVIGGFVRDFLLKRGNAKDIDVVTIGNGIALAKKVANLLP 72
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +YGT + + R + ++ V + D RRDFTINA
Sbjct: 73 NKPKVKVFKTYGTAMLETGDIEVEFVGARKESYSEDSRNPSVEPGTLEDDQNRRDFTINA 132
Query: 127 LYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L + D G+ DL N IK + +D LR+LR RF + I
Sbjct: 133 LALSLNKENFGDILDPFNGIEDLANGVIKTPLNPDITYSDDPLRMLRAIRFASQLDFF-I 191
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
D L A + + +KI++ ER+ +EINK+L + P + + I ++
Sbjct: 192 QEDSLNAITRNNERIKIITKERVVTEINKILLSTTPSKGFALLRKTELLPHILPELTALQ 251
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP--- 288
Q + + + + + + LR+ L+ K KK
Sbjct: 252 GIDEKEGQRHKDNFWHTLEVVDNIAKHTDNLWLRWAALLHDIGKAPTKKFHKKIGWTFHG 311
Query: 289 --------------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ F+ + +S +
Sbjct: 312 HEFVGSKMVYKLFKRLKMPLNDKMKFVQKMVLMSSRPIVISEDHVTDSAVRRLIFDAGDY 371
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDII-------------HWKKPLFPLTGDDVVK-YG 374
++ + L ++T ++ + + H + P++G+++++ +
Sbjct: 372 IEDLMTLCEADITTKNPKRYRRYHRNFEVVRTKIKEVEERDHIRNFQPPVSGEEIMETFK 431
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
I PG+++G I KQ ++ E
Sbjct: 432 IKPGREIGQIKESIKQAILDGKIPNEYEAAKAY 464
>gi|255536246|ref|YP_003096617.1| tRNA nucleotidyltransferase [Flavobacteriaceae bacterium 3519-10]
gi|255342442|gb|ACU08555.1| tRNA nucleotidyltransferase [Flavobacteriaceae bacterium 3519-10]
Length = 506
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 80/459 (17%), Positives = 161/459 (35%), Gaps = 59/459 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + K + IVGG VRD LM DID T + + +
Sbjct: 46 KLFKLVSEVAAKNGQSAYIVGGYVRDLLMKRGVPSDIDFVTEGSGIDLAQALANEINPRW 105
Query: 72 PT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+YGT + R + + V + D RRDFT+NAL
Sbjct: 106 KVSVFKNYGTAMFKHNGLDLEFVGARKESYAEDSRNPAVEAGTLEDDQKRRDFTVNALAI 165
Query: 130 DQQGKV----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ ID GG++DL+N+ I+ + +D LR+LR RF + I+ +
Sbjct: 166 SLNKENFGELIDPFGGISDLKNKIIRTPLEPSQTYSDDPLRMLRAIRFAS-TLRFKIEEN 224
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---- 241
L A + +KI+S ERI E NK++ ++ P + + G+ + I ++ +
Sbjct: 225 SLAAIKTEAERIKIVSRERIMVEFNKIMLSEKPSAGLKILEQTGLMQIILPELTALRGIE 284
Query: 242 -------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS---------MAKKF 285
+ + + + + LR+ L+ K +F
Sbjct: 285 EVEGQTHKDNFWHTLEVVDNISKNTDSLWLRWAALLHDVGKAPTKKFVEGTGWTFHGHEF 344
Query: 286 SLPREIRYFLISF-------------------FNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ ++ S +++L + G+ +
Sbjct: 345 LGSKMVKTIFQRLKLPLGPDMKYVQKLVKLSSRPIALIDDGTSDSALRRLLFDAGEDLED 404
Query: 327 AKLKIFLALHYNNLTHQDTCFI--------LQVLSDIIHWKKPLFPLTGDDVVKYG-IPP 377
+ + N Q+ ++ + + + P+TG+++++ + P
Sbjct: 405 LFILNKADITTKNSFKQEKFKRNFETVALKIKEVEEKDQVRNFQPPITGEEIMELFSLKP 464
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G+++G + K+ + Q ++ED + IA ++
Sbjct: 465 GREIGVLKEKVKEAILEGEIQNNREDARLFV---IAEAE 500
>gi|148269360|ref|YP_001243820.1| CBS domain-containing protein [Thermotoga petrophila RKU-1]
gi|147734904|gb|ABQ46244.1| CBS domain containing protein [Thermotoga petrophila RKU-1]
Length = 863
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 88/422 (20%), Positives = 158/422 (37%), Gaps = 29/422 (6%)
Query: 12 DSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D ++N+ LL K D+ +VGG VRD L+ + DIDI +
Sbjct: 451 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIENLDIDIVVEGNALEFAEYAKRFL 510
Query: 68 YKVIPTSISYGTIK-IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + T + DI T R + V K D RRDFTINA
Sbjct: 511 PGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINA 570
Query: 127 LYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ K +ID+ GG DL+ I+ + ++D RILR RF + +
Sbjct: 571 MAIKLNSKDFGLLIDFFGGYRDLKEGVIRVLHT--LSFVDDPTRILRAVRFEQRFDFRIE 628
Query: 183 DSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ + ++G + + R+ E+ K+LE KNPL +I M + K +F
Sbjct: 629 ETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTYYT 688
Query: 242 ------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+ + E+ F V + + D +S + ++SL R + +
Sbjct: 689 PSMDGKMENLFRNIPWVEENFGEVDKFYAALHVFLEFYDDESWKEVRDRYSLRRNLINEI 748
Query: 296 ISFFNCNFNQKTL-SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ S Y V + FLA ++L++ +
Sbjct: 749 RHVEKSAPALLEMLSERVPVSFVYPLVKGVSSETICHFLAYLSGEKEELFKSYLLKIKNT 808
Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ + G+ +++ GI GK +G +L ++ E+ +L++++AS
Sbjct: 809 KLEK------INGEYLIRKGITSGKIIGEVLEKILMRKLDGD--TRDEE--EILKEVLAS 858
Query: 415 SQ 416
+
Sbjct: 859 LE 860
>gi|237741122|ref|ZP_04571603.1| poly(a) polymerase [Fusobacterium sp. 4_1_13]
gi|229430654|gb|EEO40866.1| poly(a) polymerase [Fusobacterium sp. 4_1_13]
Length = 451
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 100/439 (22%), Positives = 183/439 (41%), Gaps = 49/439 (11%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I IL+ LNK K IVGGA+RD L+ L +D+D T + + +FS+ K T
Sbjct: 14 IKILNKLNKYG-KGYIVGGAIRDILLGLKPKDVDFTTNLPYRTLKTLFSEYTPK--ETGK 70
Query: 76 SYGTIKIICRKKYFDITTLRSDLIT-------DGRYAKVVFTRDWKADSLRRDFTINALY 128
S+G ++I ++I R D KV F D + D RRDFTINA+
Sbjct: 71 SFGVLRIRIDNTDYEIAKFRKDNYEEKDGLKIIPEEKKVSFVDDIRNDLARRDFTINAMA 130
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+Q+ +ID G D+ N+ I F+G+A RI+ED LR+LR FRF + + ++ + +
Sbjct: 131 YNQKEGIIDLYNGQKDIENKIINFVGNAEERIIEDPLRVLRAFRFMSRL-KFSLSENTIE 189
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K K+ LK + ERI E +KLL +N N + M + G+ + I + +
Sbjct: 190 AIKKQKELLKNIPEERITMEFSKLLLGENIKNTLTLMKDTGVLELIIHEFKATYDFNQCN 249
Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQ----------------------DKKSI 278
+F D LR+ L+
Sbjct: 250 PHHNLDLFNHIINVVSKVPADLELRYSALLHDIAKPVVQTFDEEGIAHYKTHEIVGADMA 309
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ + LP ++ ++ + + ++ + KL G + ++ +A +
Sbjct: 310 RDILTRMKLPVKLIDTVVEIIKKHMVLYRDVTDKKFNKLLSEMGYGNLWRLIEHCIADNE 369
Query: 338 NNLTHQDT------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
+ + + + + + + G D+++ G GK++G I +
Sbjct: 370 SKNNEVVSTENDLHERLKRAVEKQMQVTVNDLAINGKDLIELGFT-GKEIGQIKKDLLDK 428
Query: 392 WINSSFQLSQEDLHHLLRK 410
+++ Q +E++ + +++
Sbjct: 429 YLSEEIQNEKEEMLNYVKE 447
>gi|228472020|ref|ZP_04056788.1| polyA polymerase family protein [Capnocytophaga gingivalis ATCC
33624]
gi|228276632|gb|EEK15345.1| polyA polymerase family protein [Capnocytophaga gingivalis ATCC
33624]
Length = 476
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 88/461 (19%), Positives = 162/461 (35%), Gaps = 60/461 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKT-- 66
D I + ++ + +VGG VRD L++ +DIDI T + +
Sbjct: 7 LSDPIFHLISQIAHENNQECFVVGGFVRDLLLSRGQAKDIDIVTLGSGISLAEKVAAELP 66
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
I ++GT I + R + + +V D RRDFTINA
Sbjct: 67 NNPKISVFKNFGTAMIKTENIDIEFVGARKESYREDSRKPIVEDGSLSDDQNRRDFTINA 126
Query: 127 LYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L D G++ID G++DL+N I+ + + +D LR+LR RF I
Sbjct: 127 LALSLSKDSFGELIDPFHGVDDLQNGLIRTPLEPNVTYSDDPLRMLRAIRFATQLNFV-I 185
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ L A K+ LKI+S+ERI E+NK+L + P ++ G+ I ++
Sbjct: 186 EEKSLQAIADNKERLKIISNERIAEELNKILASPTPSVGFKLLFQTGLLSLILPELVALQ 245
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL---- 287
Q + + + + + D LR+ L+ K KK
Sbjct: 246 GVDEKEGQRHKDNFWHTLEVVDNISKHTDDLWLRWAALLHDIGKAPTKRFDKKIGWTFHG 305
Query: 288 -------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
E F+ + ++ +
Sbjct: 306 HEFLGGKMVVKIFQRLRLPQNEKMKFVQKMVTMSSRPIIIAQDIVTDSAVRRLLFDAGDD 365
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVKY-G 374
+ + L ++T ++ + + H + P++G+D+++ G
Sbjct: 366 FEALMTLCEADITTKNPQRYKKYHQNFQIVRQKVVEVEEKDHIRNFQPPISGEDIMRLFG 425
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
+ P ++VG + K+ + S +D +K+
Sbjct: 426 LSPSREVGQLKEAIKEAILEGIISNSYDDAYPFMIEKAKKM 466
>gi|256004006|ref|ZP_05428992.1| CBS domain containing protein [Clostridium thermocellum DSM 2360]
gi|255992134|gb|EEU02230.1| CBS domain containing protein [Clostridium thermocellum DSM 2360]
Length = 870
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 85/401 (21%), Positives = 160/401 (39%), Gaps = 20/401 (4%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79
+ + + +VGG VRD ++ + DIDI ++ + +GT
Sbjct: 474 KIADDVGLNAYVVGGFVRDLILGVENFDIDIVVEGDALMFSEKLAQHYQAHLTKHDRFGT 533
Query: 80 IKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----K 134
++ D+ T R + VV K D RRDFTIN++
Sbjct: 534 AVVVLEDDFKIDVVTARKEYYEYPASLPVVEGGTIKDDLFRRDFTINSMAIKLNKSGFGN 593
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
++D+ GG DL+ I+ + + +ED RI R RF Y K + A +
Sbjct: 594 IVDFYGGRRDLQMGLIRIL--YNLSFVEDPTRIFRAIRFEQRYDFKMEEKTEEFAIKAIE 651
Query: 195 KGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD---------VQEISLD 244
G+ +S ERI E +L+ N + M + I K ++ + + + + +
Sbjct: 652 SGILGKVSHERINFEFFAMLKENNIWAILKRMEDLRILKNVYPEVVLSEDLKKLLKNAEE 711
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
L+ + E V E +LL ++L S + + +++K L +E + ++ F
Sbjct: 712 NLACLKEKVSVQESLDRTLLYLLILYSNMSFEKAVKLSEKMRLSKEYKSEILKFIEAKDI 771
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
+ I Y +++ ++I L + + FI +V+ I + K
Sbjct: 772 ILSNLSGNIDISNYDVYNELKELSMEILFVLCMLSNEKK---FIDRVILYINNLKNIKTC 828
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+TG D+ + G+ PG + +L E +N + Q ++L
Sbjct: 829 VTGKDLKELGVKPGPEYAVLLDKVLAEKLNGNLQTYNDELE 869
>gi|332672277|ref|YP_004455285.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Cellulomonas fimi ATCC 484]
gi|332341315|gb|AEE47898.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Cellulomonas fimi ATCC 484]
Length = 503
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 85/463 (18%), Positives = 153/463 (33%), Gaps = 69/463 (14%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
D I + L + +VGG VRD+ + D+D T+ PD I ++
Sbjct: 35 DAIELGELFRAAGHELALVGGPVRDAFLGRLSADLDFTTSATPDETEAILARWGDAHWDI 94
Query: 74 SISYGTIKIIC---------RKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+GTI R ++TT R+D R +VVF + D RRDFT
Sbjct: 95 GKEFGTIGARRMPGGRRGAERDVVVEVTTYRTDAYDPSSRKPEVVFGDTLEGDLSRRDFT 154
Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ + +D GL DL ++ D +D LR++R RF A G +
Sbjct: 155 VNAMAVRLPELTFVDPFDGLADLARGVLRTPVDPRQSFDDDPLRMMRAARFAAQLGF-TV 213
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ A + + I+S+ER+ E++KLL A P + + + G+ + ++ +
Sbjct: 214 EPAARAAIEDMAERIGIVSAERVRDELSKLLVAAQPRAGLEVLVDTGLADHVLPELPALR 273
Query: 243 LDQLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKKSILSM- 281
L+ + + + V+E D +LR L+ K
Sbjct: 274 LE-IDEHHRHKDVYEHSLTVLDKAIALETGPDGPVPGPDLVLRLAALLHDIGKPRTRRFE 332
Query: 282 ---------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LF 317
K+ + + +
Sbjct: 333 PGGGVSFHHHEVVGAKLAAKRLKELRFDKATVQAVSRLTELHLRFHGYGEGGWTDSAVRR 392
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTG 367
Y+ ++ +L + + D+ L G
Sbjct: 393 YVTDAGPLLERLHRLTRSDCTTRNLRKAARLSAAYDDLETRIARLQEQEELAAIRPDLDG 452
Query: 368 DDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+++ GI PG++VG H + ++ E LL+
Sbjct: 453 TQIMEILGIGPGREVGAAYKHLLELRMDRGPLGPDEARAELLQ 495
>gi|163842263|ref|YP_001626668.1| tRNA nucleotidyltransferase [Renibacterium salmoninarum ATCC 33209]
gi|162955739|gb|ABY25254.1| tRNA nucleotidyltransferase [Renibacterium salmoninarum ATCC 33209]
Length = 487
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 84/473 (17%), Positives = 153/473 (32%), Gaps = 60/473 (12%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M+ ++ D ++ + + +VGG VRD + D+D T +PD +
Sbjct: 1 MMQVLDSSTL-DPIVLELGQRFVDAGFELSLVGGPVRDLFLGRQSPDLDFTTDAIPDETL 59
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLR 119
+ V ++GTI + R ++TT R D R +V F +AD R
Sbjct: 60 VVVRSWADAVWEIGRAFGTIGLRKRDFTIEVTTYRAEAYDADSRKPEVAFGDSLEADLQR 119
Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NA+ +++D GG+ DL ++ G A +D LR++R RF A G
Sbjct: 120 RDFTMNAMALRLPGMELVDPYGGIRDLYAGVLRTPGRAEASFSDDPLRMMRAARFVAQLG 179
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + I+S+ER+ E+ KL+ A + + N G+ ++ +V
Sbjct: 180 VSLHPEVEGAM-IAMAERINIISAERVRDELTKLICAPQARLGVDVLVNTGLADQMLPEV 238
Query: 239 QEISLDQ----------LSQVIEAEQVFEWK---------IDSLLRFIVLISWQDKKSIL 279
+ L+ + EQ + D +LRF L+ K +
Sbjct: 239 SALQLEVDEHHRHKDVYQHSLQVLEQAAALETGPDGPVPGPDFVLRFAALMHDVGKPATR 298
Query: 280 SM----------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK-- 315
K + + +
Sbjct: 299 RFEPSGAVSFRHHDMVGAKLTAKRMKALRFDNDTIKAVARLVELHMRFYGYGEAGWTDSA 358
Query: 316 -LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK----------KPLFP 364
Y+ ++ +L + + D+ H
Sbjct: 359 VRRYVTDAGPVLERLHRLTRSDVTTRNQKKADRLAFAYDDLEHRIAELAEQEELGAIRPD 418
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
L G ++ + P VG +E + L E+ L ++
Sbjct: 419 LDGAQIMAILDLKPSPVVGKAYKFLLEERMEHG-PLGAEEAQRRLELWWQDNK 470
>gi|282877716|ref|ZP_06286531.1| HD domain protein [Prevotella buccalis ATCC 35310]
gi|281300288|gb|EFA92642.1| HD domain protein [Prevotella buccalis ATCC 35310]
Length = 478
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 77/459 (16%), Positives = 160/459 (34%), Gaps = 60/459 (13%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
++ FH L + L + +VGG VRD + DID+ +V
Sbjct: 12 LLDQPIFHH--LSAVADDLQ---LECYVVGGYVRDLFLERPSNDIDVVVVGSGIKVAEAL 66
Query: 64 SKTRYKV--IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ K + ++GT ++ R + + R + VV + D RRD
Sbjct: 67 KQRLGKQAHLSVFRNFGTAQVKYRGQEVEFVGARKESYNHDSRKPVVEDGTLEDDQNRRD 126
Query: 122 FTINALYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
FTINA+ +++D GL DL + I+ D +D LR++R RF
Sbjct: 127 FTINAMAVCLNEARFGELVDPFDGLLDLEDGIIRTPLDPDITFSDDPLRMMRCVRFATQL 186
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
I+ + A + ++ +KI+S ERI E+NK++ +P V ++ G+ + I +
Sbjct: 187 KFF-IEDETFEALQRNRERIKIVSGERIADELNKIMMTDHPSRGFVELHRCGLLELILPE 245
Query: 238 VQEISL-----------DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA---- 282
+ + + + + + + + LR+ L K
Sbjct: 246 FTLMDIVETRNGRAHKNNFYHTLEVVDNICQHTDNLWLRWAALFHDIGKPRSKRWDVQAG 305
Query: 283 KKFSLPREI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
F I ++ + + ++ E+
Sbjct: 306 WTFHNHNYIGSKMIPGIFRRLKFPMDSKMKYVQKMVDMHMRPIAIADEEVTDSAVRRLMN 365
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDV 370
+ + L ++T ++ + L + + + + G+++
Sbjct: 366 DAGDDIDGLMTLCEADITSKNAQRKQRFLDNFRMVREKLDDLKERDYKRLLQPCIDGNEI 425
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ + P ++VG + K +++ +E L LL
Sbjct: 426 MEMFHLQPSREVGTLKQTLKDAVLDNKVPNEREPLMALL 464
>gi|755607|gb|AAA92878.1| polyA polymerase [Bacillus subtilis subsp. subtilis str. 168]
Length = 377
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 94/396 (23%), Positives = 149/396 (37%), Gaps = 32/396 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L +L + ++ VGGAVRDS M ++ D+DIAT PD+V R+F +
Sbjct: 8 ALPVLRILIEAGHQAYFVGGAVRDSYMKRTIGDVDIATDAAPDQVERLFQR--------- 58
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+ K D R R ++V F + D RRD TINA+ GK
Sbjct: 59 ------TVDVGKDESDYVDFR-------RPSEVQFISSLEEDLKRRDLTINAMAMTADGK 105
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
V+DY GG D+ + I+ +G R ED LR+LR RF + G + + A K K
Sbjct: 106 VLDYFGGKKDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLGF-TLSPETEEAIAKEK 164
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
L +S ER E KLL+ + A+ + + L + L E
Sbjct: 165 SLLSHVSVERKTIEFEKLLQGRASRQALQTLIQTRL--YEELPGFYHKRENLISTSEFPF 222
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ L +++ K K + LP ++ I T
Sbjct: 223 FSLTSREELWAALLINLGIVLKDAPLFLKAWKLPGKVIKEAIHIA------DTFGQSLDA 276
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY- 373
Y G K +++ KI L + I ++ +TG D++
Sbjct: 277 MTMYRAGKKALLSAAKISQLRQNEKLDEKKLKDIQYAYQNLPIKSLKDLDITGKDLLALR 336
Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
P GK V L +Q + ++ + L+
Sbjct: 337 NRPAGKWVSEELQWIEQAVVTGKLSNQKKHIEEWLK 372
>gi|313202600|ref|YP_004041257.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Paludibacter propionicigenes WB4]
gi|312441916|gb|ADQ78272.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Paludibacter propionicigenes WB4]
Length = 478
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 80/473 (16%), Positives = 169/473 (35%), Gaps = 63/473 (13%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILP 56
M S + + NI ++++ D+ ++GG VRD + +DID+
Sbjct: 1 MFSKPDKDFMQEFLQDNIFKIISEAADEQQQECYVIGGFVRDIFLKRPSKDIDVVVVGSG 60
Query: 57 DRVMRIFSKTRYK--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK 114
+ + K + ++GT ++ + R + +V +
Sbjct: 61 IALAEKVALKLGKKAKLTVFKNFGTAQVKLNDLEVEFVGARKESYQRDSRKPIVEDGTLE 120
Query: 115 ADSLRRDFTINALYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170
D RRDFTINAL D GG+ DL+N I+ + +D LR++R
Sbjct: 121 DDQNRRDFTINALAICLNKDRYGELVDPFGGIEDLKNFVIRTPLNPDITFSDDPLRMMRG 180
Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230
RF A G I+++ A ++ K+ ++I+S ERI E+NK++ ++ P + + G+
Sbjct: 181 IRFSAQLGFF-IETNTFDAIVRNKERIEIISKERIADELNKIMASRKPSVGFILLEKTGL 239
Query: 231 FKEIFLDVQEI-----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279
+ IF +V + + + + + E + LR+ L+ K
Sbjct: 240 LELIFPEVLALKGAETKDGIGHKDNFYHTLAVLDGLCEMTDNLWLRWAALLHDIGKPRTK 299
Query: 280 SMAKKFSL-----------------------PREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+ E ++ + + LS EI
Sbjct: 300 RFDSRLGWTFHNHNFIGEKMIPEIFRKMKLPTNEKMKYVQKMVSLHMRPIVLSEEEITDS 359
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-------------LQVLSDIIHWKKPLF 363
+ + L ++T ++ + L+ + + +
Sbjct: 360 AIRRLLFEAGDDIDDLMTLCEADITSKNPEKVKRFRSNFQLVRNKLKEIEEKDRVRNFQP 419
Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
P++G ++++ + +P VG+I + K ++ + + ++L
Sbjct: 420 PISGQEIMETFNLPASAIVGDIKMRIKDAILDGIIPNEYKAAHAYMLQIAKEL 472
>gi|50955943|ref|YP_063231.1| poly(A) polymerase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50952425|gb|AAT90126.1| tRNA nucleotidyltransferase [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 478
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 92/441 (20%), Positives = 149/441 (33%), Gaps = 60/441 (13%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
+ +VGG +RD+L+ V D+D T PD ++R+ S V +YGTI +
Sbjct: 31 GHELSLVGGPIRDALLGREVHDLDFTTDARPDAIVRLLSPLADAVWDIGRAYGTIGAVFG 90
Query: 86 KKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLN 143
++ ++TT RSD R V F + D LRRDFT+NAL + +++D GG+
Sbjct: 91 EEAVEVTTYRSDSYDGTTRKPDVEFGDTLEGDLLRRDFTVNALALRVPEVRLVDPSGGVE 150
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203
L R + +D LR+LR RF A G +D A ++I+S+E
Sbjct: 151 HLLARVLTTPSSPEVSFGDDPLRMLRAARFAAQLGF-EVDGQTQAAMAAMADRIEIVSAE 209
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGG----------------IFKEIFLDVQEISLDQLS 247
RI E+ KLL + P I + + G DV + SL L
Sbjct: 210 RIRDELGKLLMSDRPRPGIELLVSTGLADRVLPELSALRLEVDEHHHHKDVYQHSLTVLE 269
Query: 248 QVIEAEQVFEW--KIDSLLRFIVLISWQDKKSILSM----------------------AK 283
Q IE E+ + LR L+ K +
Sbjct: 270 QAIEYERERHPGDAPELTLRLAALLHDIGKPATRRFEPGGAVSFHHHDVVGAKLAKKRLT 329
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIFLALHYNNL 340
+ + + + Y+ + +L +
Sbjct: 330 ALRFDKATIESVSRLIELHLRFFGYTEGAWTDSAVRRYVRDAGPELERLHMLTRADVTTR 389
Query: 341 THQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCK 389
+ + D+ L G V+ GI PG+ VG + +
Sbjct: 390 NRRKADRLGFAYDDLEQRIASLGEQEALDSVRPDLDGQQVMAILGIKPGRDVGQAMTYLL 449
Query: 390 QEWINSSFQLSQED---LHHL 407
++ +E L
Sbjct: 450 DLRLDQGSLGEEEATRRLLAW 470
>gi|189500462|ref|YP_001959932.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Chlorobium phaeobacteroides BS1]
gi|189495903|gb|ACE04451.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Chlorobium phaeobacteroides BS1]
Length = 475
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 86/459 (18%), Positives = 159/459 (34%), Gaps = 58/459 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPT 73
L I + ++ + +VGG VRD+LMN DIDI P ++ + + K
Sbjct: 16 LYRIGDIADRTDTPCYLVGGYVRDNLMNTPSHDIDIMIIGEPIPFAKLVEQELKGKNFVV 75
Query: 74 SISYGTIKIICRKKYF-----DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ T ++ +I R + + + D RRDFTINAL
Sbjct: 76 FERFRTARLELDSSQEETTVVEIVGARKESYNPDSRKPITEIGSLEDDLSRRDFTINALA 135
Query: 129 ADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ ++D G +DL+ + ++ + H +D LR++R RF + +D
Sbjct: 136 VQLNNEHRNSIVDLFNGYDDLQKKMLRTPLEPHKTFSDDPLRMMRAARFACQLDFQ-LDR 194
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
L A + + I+S ERI E K++ + P + +Y+ GI I ++ ++
Sbjct: 195 QALNAMTDMAERITIVSRERISQEFLKIITCRKPSVGLKILYSTGILGHIMPELNAMAGI 254
Query: 245 Q-----------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK--------- 284
+ L +++ E + LR L K K
Sbjct: 255 EQVDGLGHKDTLLHTFQVVDKLAEKSDNLWLRIAALFHDIAKPVTKRFNKHAGWTFHGHE 314
Query: 285 -------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
P + ++ + LS EI L
Sbjct: 315 AVGKKLCGNIFRSMRWPLDPLPYVQKMIRLHHRPIPLSKGEITDSAVRRLMYDAGNDLDD 374
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGIPP 377
+ L ++T ++ + +++++ +K P+TG D++ G+
Sbjct: 375 LMTLCRADVTSKNPRKVQRIMNNFNIVEKKITEVAEKDLLAKWRPPITGSDIMDTLGLSE 434
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
GK VG I + I +E ++K Q
Sbjct: 435 GKLVGIIKNRMETAVIEGEIPYDREAALEYIKKTYREMQ 473
>gi|224437602|ref|ZP_03658555.1| poly(A) polymerase [Helicobacter cinaedi CCUG 18818]
gi|313144052|ref|ZP_07806245.1| poly(A) polymerase [Helicobacter cinaedi CCUG 18818]
gi|313129083|gb|EFR46700.1| poly(A) polymerase [Helicobacter cinaedi CCUG 18818]
Length = 465
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 111/449 (24%), Positives = 177/449 (39%), Gaps = 64/449 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLM---------NLS--------VQDIDIATTIL 55
+ ILS L K+ IVGG VRD ++ L D DIAT+ L
Sbjct: 17 ESVEFILSQLQMSGYKAYIVGGCVRDMILHTLECSDNAGLKSDLAYQNLPSDYDIATSAL 76
Query: 56 PDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDW 113
P V+R+F + IPT + +GTI +I K ++I+T R + + A FT +
Sbjct: 77 PSEVIRLFP----RTIPTGLKHGTISVIYDNKIYEISTFRIEGAYSNKRAPDSVRFTTEL 132
Query: 114 KADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
+ D RRDFT+NAL +ID VGGL D+ NR I +G+AH R ED LRILR RF
Sbjct: 133 EQDLQRRDFTMNALAYSPHTGLIDKVGGLRDIINRKIVCVGEAHLRFNEDALRILRVLRF 192
Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
A I+S A + K L +S ERI E+ KLL + + +
Sbjct: 193 AATLDF-EIESHTDSALRECAKNLCYISKERIKDELTKLLCGRAAEKIMRKYSDVLNVAF 251
Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
+ E +L Q IE + F W + L + + + + + R
Sbjct: 252 GGMISFEGLEVRLPQNIE-SKAFVWAL-FLAQVCDWGKTSKRDKADKILESLKFDNKTRR 309
Query: 294 FLISFFNCNFNQKTLS-----------------------------IPEIKKLFYLYGDKV 324
++ + K + G+++
Sbjct: 310 YVSEILKACEIPLETNRQEIAGRIIALGGRETREFGHLERGCASEKMSGDKELSISGERI 369
Query: 325 MIAKLKIFLALHYNNLT----HQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIP 376
+ +++ +A+ +LT + + + ++ P + GDD+ G
Sbjct: 370 LRDMIRLKMAVVAQDLTQDSAQKGLKEFQKNMEQVLVSNLPLSLKELCINGDDIKALGFV 429
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLH 405
GK +G IL +E ++ + S+E L
Sbjct: 430 -GKDIGRILQILLEEIVSEKLKHSREALL 457
>gi|206890724|ref|YP_002249348.1| polyA polymerase family protein [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206742662|gb|ACI21719.1| polyA polymerase family protein [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 874
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 93/426 (21%), Positives = 165/426 (38%), Gaps = 34/426 (7%)
Query: 12 DSDLINILSLL----NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
++ IL + + + +VGG VRD LM DIDI +K
Sbjct: 455 SEEVYEILRIAGNLAEEMGSGAYLVGGTVRDLLMRRPSPDIDIVVEGDGIAFAHELAKKI 514
Query: 68 YKVIPTSISYGTIKII--------CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + T KI+ ++ Y DI T R++ V T K D R
Sbjct: 515 DGKVTPHPRFATAKILKEIKKDGEIKRFYIDIATARTEYYESPAALPKVETSSIKKDLYR 574
Query: 120 RDFTINALYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
RDFTINAL K +ID+ GG D++++ I+ + + +ED R +R RF
Sbjct: 575 RDFTINALAVKLNTKDFGLLIDFFGGQRDIKDKKIRVLH--NLSFVEDPTRAIRAIRFSE 632
Query: 176 HYGEK-NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
G K + ++ L+ + L R++ E+ LL+ P ++I + + G+ K I
Sbjct: 633 KLGFKISKHTENLIKLAVKMNIFEKLKGPRLYEELILLLKETLPHHSIKRLGDYGLLKLI 692
Query: 235 FLDVQEISL-DQLSQVIEAEQVFEWKI------DSLLRFIVLISWQDKKSILSMAKKFSL 287
++E ++ + L++ E Q E + +V++ + + +
Sbjct: 693 HPAIEERTIYNDLAKAYETIQGIELLFLKEEYRKEFIYLMVILWNLNLSEREELLHRICA 752
Query: 288 PREIRYFLISFF--NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345
P I+ LI Q + + +Y + I L + Y +
Sbjct: 753 PVNIKRELIENISSAQKALQLFTAENSQEFNVQIYNLLKPLNIETIILMMIYAKEWQKKA 812
Query: 346 CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+ + + K +TG+D+ K GI PG IL +E + LS+E+
Sbjct: 813 -----IFNYLTKLKDIKPLITGEDLKKLGIQPGPVYRKILESILREKLQGRL-LSKEEEI 866
Query: 406 HLLRKL 411
+K+
Sbjct: 867 EFAKKI 872
>gi|39996681|ref|NP_952632.1| polyA polymerase family protein [Geobacter sulfurreducens PCA]
gi|39983562|gb|AAR34955.1| polyA polymerase family protein [Geobacter sulfurreducens PCA]
gi|298505692|gb|ADI84415.1| adenosine-specific tRNA nucleotidyltransferase [Geobacter
sulfurreducens KN400]
Length = 880
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 85/411 (20%), Positives = 145/411 (35%), Gaps = 35/411 (8%)
Query: 19 LSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L L K D+ VGG VRD L+ DID++ + + +
Sbjct: 468 LRDLGKVGDELELPVYAVGGFVRDLLLGAENDDIDVSVEGDGILFAETVANRVGCRVKSH 527
Query: 75 ISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+GT I+ D+ + R + V K D RRDFTIN L
Sbjct: 528 AKFGTAVIVFPDGLKVDVASTRLEYYETPGALPTVERSSLKMDLYRRDFTINTLAVKLNA 587
Query: 134 K----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ +IDY G DL+ +TI+ + + +ED R+ R RF G +
Sbjct: 588 EGFGTLIDYFGAYRDLQEKTIRVLH--NLSFVEDPTRVFRAIRFEQRLGFPISRHTENLI 645
Query: 190 SIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
K G L R+ +E+ +L + P+ AI+ M G+ + I D+ ++ + L
Sbjct: 646 KNAVKMGFLDKLGGRRLLNELVLILREREPVKAILRMSGLGLLRFIHPDL-VLAPNTLQV 704
Query: 249 VIEAEQVFEWKI---------DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ E ++V W ++ F+ L S + + S+ R LI
Sbjct: 705 LDEVKKVITWFDLLYLGEKVETWVVYFLALTSSLPDEGFWGTCTRLSVSEHYREKLIDMR 764
Query: 300 -------NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
+ + Y + + L +A ++ + + L
Sbjct: 765 VHGEQVLEVMTRKAARREDVRRSDIYFWLRGLSPEVLLYIMAKTRSDEVRRYVSLYVTQL 824
Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED 403
I+ +TGDD+ GIP G + IL +N ++
Sbjct: 825 RGIVTH------ITGDDLKTLGIPSGPRYREILDRVLTARLNGEAATRDDE 869
>gi|15603895|ref|NP_220410.1| poly(A) polymerase (pcnB) [Rickettsia prowazekii str. Madrid E]
gi|3860586|emb|CAA14487.1| POLY(A) POLYMERASE (pcnB) [Rickettsia prowazekii]
gi|292571611|gb|ADE29526.1| Poly(A) polymerase [Rickettsia prowazekii Rp22]
Length = 387
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 113/400 (28%), Positives = 179/400 (44%), Gaps = 23/400 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ ILSLLNK +S ++GG VRD+L++ DIDIAT ++P + I S K
Sbjct: 10 ISSKEYKKILSLLNKKG-QSRLIGGCVRDALLDKDTYDIDIATNLMPGEAINILSSANIK 68
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+IPT + +GTI I + F+ITTLR D+ +GR+AKV+F++D+ D+ RRDFTINAL
Sbjct: 69 IIPTGLKFGTITAILNNEKFEITTLRKDIECNGRHAKVIFSKDFAEDAARRDFTINALSY 128
Query: 130 DQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
++ DY G DL+ + FIG A +RI EDYLRILRFFRF ++Y +
Sbjct: 129 CPFKNEIYDYFDGFKDLQRAKVVFIGKAFNRIKEDYLRILRFFRFSSYYANQLDYESFKA 188
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ I+K++ +K + M+ GI + IF +Q + +
Sbjct: 189 CDTLKYGLKTLSRERIKSE-IDKIIVSKRATQILEAMFKIGILELIF-SIQNYEIKFFER 246
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ K LL ++ L + + + ++S N + +
Sbjct: 247 ANNFKLELATKYALLLYNQQNLN-------LKIFLNWKFSKHEAMQILSILNFLNDAEFN 299
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ K L + D + + + P F L G+
Sbjct: 300 IKKIWFE------KKNYKEYLLAACIID-----KLDYSQVKEFILKYDTLSHPKFELNGN 348
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
D++ I K++G L + K WI F+ S+ +L L
Sbjct: 349 DLLNLNIEK-KEIGAKLEYLKNFWIEHDFKPSKSELLEKL 387
>gi|332827244|gb|EGK00017.1| hypothetical protein HMPREF9455_03661 [Dysgonomonas gadei ATCC
BAA-286]
Length = 482
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 80/445 (17%), Positives = 164/445 (36%), Gaps = 55/445 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTSI 75
I + + + + +GG VRD ++ +DIDI T + + ++T K +
Sbjct: 25 ISQVADDMQLECYAIGGYVRDIFLHRPSKDIDIVTVGKGIELAQAVARTLGKKAHLSVFK 84
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-- 133
++GT +I + + R + VV + D RRDFTINAL
Sbjct: 85 NFGTAQIKYKDTEIEFVGARRESYQRDSRKPVVEDGTLEDDQNRRDFTINALAVCLNKDR 144
Query: 134 --KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+++D GL D+ + I+ D +D LR++R RF + G NI+ A
Sbjct: 145 FGELLDPFNGLKDMEDLIIRTPLDPDITFSDDPLRMMRAIRFSSQLGF-NIEPGTFDAIT 203
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------- 241
+ K + I+S ERI E+NK++ + P + + G+ IF ++ +
Sbjct: 204 RNKDRIGIISGERIIDELNKIVLSPKPSVGFLQLDQTGLLAIIFPELVALKGAETKEGVG 263
Query: 242 -SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP------------ 288
+ ++ + + + D LR+ ++ K + KK
Sbjct: 264 HKDNFYHTLVVLDNISKKTDDLWLRWSAILHDIAKPATKRFDKKLGWTFHNHNFIGEKMI 323
Query: 289 -----------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
E ++ + + L +I ++ + L
Sbjct: 324 PGIFRRMKLPLNEKMKYVQKMVTLHMRPQVLVDEDITDSAVRRLLFEAGDDIEDLMTLCE 383
Query: 338 NNLTHQDTCFILQVLSDII-------------HWKKPLFPLTGDDVVK-YGIPPGKKVGN 383
++T ++ + + L + H + P+ G+++++ +G+ PG +VG
Sbjct: 384 ADITSKNPEKVRRYLRNFELVRHKLKDIEEKDHVRNFQPPIGGEEIMEIFGLAPGVEVGR 443
Query: 384 ILVHCKQEWINSSFQLSQEDLHHLL 408
+ K ++ + + L
Sbjct: 444 LKSSVKDAILDGVISNEYDAAYEYL 468
>gi|317177458|dbj|BAJ55247.1| poly(A) polymerase [Helicobacter pylori F16]
Length = 407
Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats.
Identities = 75/403 (18%), Positives = 140/403 (34%), Gaps = 22/403 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + +L + + K + +VGG VRD L+ ++ +D D+ + L + + K +
Sbjct: 2 FELEKELQELFDIYEKSPYELYLVGGCVRDCLIGITPKDYDLTSNALVNESKDLLLKHHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--ADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + + D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N ++N+ I+ +G+A R ED LRILR RF A G K +
Sbjct: 122 IAYSPTKGIIDPFKGQNAIKNQVIECVGEARLRFFEDALRILRALRFSATLGFKIV---- 177
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + ++ + + L
Sbjct: 178 ---------LSTKEAIFACKDLLKHLSKERLQNELNKLLMGKNAYEVAKEYQEILELVTQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + + LR + P++ + C
Sbjct: 229 EKIENLGFLKNAPFNLELR------LLGFFKHQKSLENLRYPKKTCVLFLKAKECYKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
K D F AL + + ++ + +KK L
Sbjct: 283 NTHNKTELKFLLKNYDLEPFNLALDFYALKNPKCALKIKSLLKEISNANEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +++G IL C I S E L ++
Sbjct: 343 GGTLQNLGYQ-CQQIGEILNACLNLVIAHPKNNSLEWLIKWVK 384
>gi|203288136|ref|YP_002223151.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Borrelia
recurrentis A1]
gi|201085356|gb|ACH94930.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Borrelia
recurrentis A1]
Length = 432
Score = 153 bits (385), Expect = 6e-35, Method: Composition-based stats.
Identities = 107/406 (26%), Positives = 169/406 (41%), Gaps = 18/406 (4%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ D+I I + N + +VGGA+RD L+ D D T P +M++F K
Sbjct: 31 NTKDIIKISQIFNNHNYEFFLVGGALRDLLLKKIPYDFDFTTNATPKEIMKLFPKN---- 86
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALY 128
I T I +GTI II KK F+ITT R D+ + + + FT++ K D RRDFTINA+
Sbjct: 87 IQTGIKHGTISIIFNKKIFEITTYRIDIDYENKRSPKQIKFTKNLKEDLKRRDFTINAIA 146
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
++IDY G DL + IK IG+ + R ED LRILR RF + + +
Sbjct: 147 MHTLNFEIIDYYNGQQDLNKKIIKCIGNPNKRFEEDALRILRAARFASTLNFTIDKNTLI 206
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
K L LS ERI +E KLLE +NP I ++ FK +++
Sbjct: 207 SMKYKKNNILF-LSKERINNEFIKLLEGENPTKGIKYLQKINFFKYF------FNIEINK 259
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF---FNCNFN 304
++I+ + L ++ QD ++ K + ++ + N
Sbjct: 260 KLIKKITLLNKNKFYLKAIVIFTIKQDISNLKQNLKLLKFSNKDIKLILLYKTTINAIHK 319
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH-WKKPLF 363
+ I+ + L I+ AL N + ++ +
Sbjct: 320 LNPKKLYHIRIFLSKTTRENYKETLDIYKALKGKNNKFKFITNKIKNNKLLRDPLSLKEL 379
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ G+DV K+ + K G IL H E + +E L ++
Sbjct: 380 QINGNDVKKFQLRTHKNTGIILNHLLNEVLIEPKLNKKEILLQKIK 425
>gi|210633527|ref|ZP_03297796.1| hypothetical protein COLSTE_01712 [Collinsella stercoris DSM 13279]
gi|210159122|gb|EEA90093.1| hypothetical protein COLSTE_01712 [Collinsella stercoris DSM 13279]
Length = 452
Score = 153 bits (385), Expect = 6e-35, Method: Composition-based stats.
Identities = 79/444 (17%), Positives = 156/444 (35%), Gaps = 65/444 (14%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
L +L ++ IVGG VRD+LM DIDI + ++ V+ + + +G
Sbjct: 2 LRVLESAGLEAWIVGGWVRDALMCAPGHDIDICCSGSWEQSAAALRAEGIAVVESGVKFG 61
Query: 79 TIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVI 136
I + + ++T R D TDGR+ + V + + D RRDFT+NA+ + ++
Sbjct: 62 GITAVLDGERIEVTAYRLDGFYTDGRHPESVRRAQCVEEDLARRDFTVNAMAWHPRRGLL 121
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
D G DL R I+ +G+ R ED LR+LR RF ++D+ A
Sbjct: 122 DLYDGRGDLERRQIRAVGEPRRRFEEDALRMLRAVRFACRLDF-SMDAATASALDSCAPL 180
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
L ++ ER+ E+ +L +A+ + + ++ + A V+
Sbjct: 181 LDAVARERVGIELEGILVTGRGGDAL--LRYPELMCAAIPELARMRGFNQRTPYHAFDVY 238
Query: 257 EW-----------------------KIDSLLRFIVLISWQDKKSILS------------- 280
E L + L+ K +
Sbjct: 239 EHTARVLTVAGELSRFRIDGGDPDAPPSPSLMWAALLHDVAKPDTFTVDERGRGHFYGHP 298
Query: 281 ---------MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG------DKVM 325
+ ++ S ++ + + ++ ++ + ++M
Sbjct: 299 ERGAARAKAIMRRLSCGNDLMRDVNLLIRYHDQPLRPERVDLLRMMQRFASGGVDVPRLM 358
Query: 326 IAKLKIFLALHYNNLT---------HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376
+ A + + + +++++ + LTG D++ +G+
Sbjct: 359 GELFDLKRADTLGKASQCFYYVDEIERMREMVRELIANGEAYSVKTLNLTGKDLIAHGMA 418
Query: 377 PGKKVGNILVHCKQEWINSSFQLS 400
PG +VG L + I S
Sbjct: 419 PGPQVGAALNRALEGAIVGEVPNS 442
>gi|270284638|ref|ZP_05966443.2| tRNA adenylyltransferase [Bifidobacterium gallicum DSM 20093]
gi|270276581|gb|EFA22435.1| tRNA adenylyltransferase [Bifidobacterium gallicum DSM 20093]
Length = 512
Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats.
Identities = 83/459 (18%), Positives = 155/459 (33%), Gaps = 66/459 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + L + + +VGG VRD L+ D+D T+ P++ I +
Sbjct: 23 PEAIELGRLFAQEGYELALVGGPVRDLLLGRPSHDLDFCTSATPEQFEPILRRYGKDGFW 82
Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R+ ++TT RSD D R +V + + D RRDFT+N
Sbjct: 83 DMGRKFGTLGALRRRDDGTEVQMEVTTYRSDVYDPDSRKPEVNYGDSLEGDLSRRDFTVN 142
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG +DL + ++ D +D LR++R RF A G I
Sbjct: 143 AMALRVPDLEFVDPFGGASDLHKQVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFH-IAP 201
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A + I+S+ER+ E+ KLL ++ P + G+ +F ++ + L+
Sbjct: 202 ETAEAMTDMVDRIDIVSAERVRDELTKLLLSERPRLGLEAFVESGLANIVFPEIPALQLE 261
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKKSILSM--- 281
+ + + VFE D LR L+ K
Sbjct: 262 -IDEHHRHKDVFEHTMIVVDRAVALETGPDGPVPGPDLTLRLAALVHDIGKPKTRRFEPG 320
Query: 282 -------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYL 319
+ + + + + Y+
Sbjct: 321 GKVSFHHHDAVGAKLTRKRLRALRFDHHLVDDVSELVDLHLRFHGYVDEPWTDSAVRRYV 380
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
+ +L + + ++ L GD+
Sbjct: 381 KDAGHLYHRLNRLTRADATTQNRRKAAMFAHAMDEMEARVTRLKEQEDIDAIRPDLNGDE 440
Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
++ + G+ PGK VG H + +++ + L L
Sbjct: 441 IMAELGLQPGKMVGLARKHMLEYRLDNGPVDHETALAEL 479
>gi|237739984|ref|ZP_04570465.1| Poly(A) polymerase [Fusobacterium sp. 2_1_31]
gi|229422001|gb|EEO37048.1| Poly(A) polymerase [Fusobacterium sp. 2_1_31]
Length = 451
Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats.
Identities = 99/439 (22%), Positives = 176/439 (40%), Gaps = 49/439 (11%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I IL LNK K IVGG++RD L+ L +DID T I + + +FS+ K T
Sbjct: 14 IEILRKLNKYG-KGYIVGGSIRDILLGLKPKDIDFTTNIPYETLKDLFSEYNPK--ETGK 70
Query: 76 SYGTIKIICRKKYFDITTLRSDLITD-------GRYAKVVFTRDWKADSLRRDFTINALY 128
++G ++I + ++I R D + KV F D K D RRDF+INA+
Sbjct: 71 AFGVLRIRVNEIDYEIAKFREDNYEEKDGLKIVPEDNKVDFVDDIKEDLARRDFSINAMA 130
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
++ ++D G D+ N+ I F+G+A RI+ED LRILR FRF + G + + +
Sbjct: 131 YNEADGIVDLYNGQKDIENKVINFVGNAEERIIEDPLRILRAFRFMSRLGFSS-SENTIE 189
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K K LK + ERI E +KLL +N N + M + G+ + I + + +
Sbjct: 190 AIKKQKDLLKSIPEERITMEFSKLLLGENVKNTLTAMKDTGVLELIIPEFKATYDFEQHN 249
Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQ----------------------DKKSI 278
+F D LR+ L+
Sbjct: 250 PHHNLDLFNHIISVVSKVPADLELRYTALLHDIAKPLVQTFDENGIAHYKTHEIVGADMA 309
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ + LP ++ + + + ++ + KL G ++ ++ A +
Sbjct: 310 RDILTRLKLPVKLIETVEDIIKKHMVLYRDVTDKKFNKLLSEMGYDNLLRLIEHCNADNG 369
Query: 338 NNLTH------QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
+ + + + + L G D++ G G ++G I +
Sbjct: 370 SKNNEVVNPENDLHERLKRAVEKQMQVTVNDLTLNGKDLIDMGFK-GTEIGKIKGELLDK 428
Query: 392 WINSSFQLSQEDLHHLLRK 410
+++ +E + +++
Sbjct: 429 YLSEEIPNEKEAMLAYVKE 447
>gi|120602478|ref|YP_966878.1| polynucleotide adenylyltransferase region [Desulfovibrio vulgaris
DP4]
gi|120562707|gb|ABM28451.1| Polynucleotide adenylyltransferase region [Desulfovibrio vulgaris
DP4]
Length = 904
Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats.
Identities = 80/401 (19%), Positives = 143/401 (35%), Gaps = 21/401 (5%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82
+ VGG VRD L++ D+D+ R+F+ + + T +
Sbjct: 482 ERLGVSVYAVGGFVRDLLLDRPNYDLDLVIEGDGVAFARVFAAEVGGRLREHAKFKTALV 541
Query: 83 ICRKK-----YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----G 133
I + D+ T R + V K D RRDFTINAL G
Sbjct: 542 IFTDENGAEQRVDVATARLEYYEYPAALPTVELSSIKMDLFRRDFTINALAVQLDGAQFG 601
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK- 192
+++D+ G D++++ I+ + +ED RILR RF Y +
Sbjct: 602 RLVDFFGSQRDMKDKGIRVLH--SLSFVEDPTRILRAVRFAVRYDFSIGPQTQRLIKNAL 659
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------SLD 244
+ LS RI+ E+ +LE + P+ + + + G+ + I + S +
Sbjct: 660 GLGLMGRLSGPRIFHELRLILEEQAPVECLARLEHFGVLEAIHPLFKLTPSRTNLLESTE 719
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
Q+ + E L+ + L K S+A + +LP R +S +
Sbjct: 720 QVLNWYRLLYLDEEPQRWLIYLLALCLNMKYKESASIADRLALPPSARNAFLSTRETLRS 779
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
+++ L ++ L + LH + + V + +
Sbjct: 780 TGPKVEKWMREEGPLSELYALLKPLALEGVLHMMARSKSEDLR-RHVSQFLTRLQHEKLD 838
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+ GDD+ G+PPG G +L H ++ L
Sbjct: 839 INGDDLRAMGLPPGPAYGRVLQHVLAAKLDGHAPTRTVQLE 879
>gi|239906839|ref|YP_002953580.1| nucleotidyltransferase [Desulfovibrio magneticus RS-1]
gi|239796705|dbj|BAH75694.1| nucleotidyltransferase [Desulfovibrio magneticus RS-1]
Length = 934
Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats.
Identities = 71/422 (16%), Positives = 140/422 (33%), Gaps = 28/422 (6%)
Query: 13 SDLINILSLL----NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
L +L + +VGG VRD L+ D+D+ ++
Sbjct: 471 KKLQALLKQAGELGQQTGHAVYVVGGFVRDLLLKHPNFDVDLVVEGDGVAYAAELARIYG 530
Query: 69 KVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + T +I + D+ T R + V K D RRDFT+NAL
Sbjct: 531 GRYKSHPKFKTAVVILPDGQRVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTVNAL 590
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ + + + +ED RI+R RF +G +
Sbjct: 591 ALHLSPERFGDLVDFFGAQRDIKDRVLRVLHSLSFVEDPTRIVRAIRFSERFGFRIGGQT 650
Query: 186 GLVASIKAKK-GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----Q 239
+ + LS R+ E+ + E K PL+ + M + + I + +
Sbjct: 651 DRLIKNAVRHSFFHKLSGSRVMHELRLIFEEKTPLSCLRRMQDYKLLAAIHPLLALTPSK 710
Query: 240 EISLDQLSQVIEAEQVFEWKID---SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
E L ++ VI ++ + +L F+ L + D + +A++ + + ++
Sbjct: 711 EAVLLEVENVINWYRLLYIEPQPQVWMLYFLGLCTGLDPEQFAIIARRLNFSKRQAAEMV 770
Query: 297 SFFNC-NFNQKTLSIPEIKK----LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ + + E K Y + + + +A + +
Sbjct: 771 ALRQQIRDTAQGIFNWEYHKGPPSELYFLLEPMPLEGALYLMARNPREPLQKYVSL---- 826
Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+ + +TG+D+ G+ G + +IL I+ E L L R+L
Sbjct: 827 --HLTTLRHKRVEVTGNDLKALGVEAGPRYADILRRVVGAAIDGLAVCRAEQL-ELARRL 883
Query: 412 IA 413
Sbjct: 884 AK 885
>gi|208434561|ref|YP_002266227.1| poly(A) polymerase [Helicobacter pylori G27]
gi|208432490|gb|ACI27361.1| poly(A) polymerase [Helicobacter pylori G27]
Length = 402
Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats.
Identities = 78/403 (19%), Positives = 142/403 (35%), Gaps = 25/403 (6%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + +L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINA 126
+V+ T I +GTI ++ + ++ITT R + F+ D RRDF++NA
Sbjct: 62 RVLETGIKHGTITVLKNHQSYEITTFRIEKGHIKHRKPKKLVFSTRLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N + N+TI+ +G+A R ED LRILR RF A G K +
Sbjct: 122 IAYSPTKGIIDPFKGQNAIENQTIECVGEARLRFFEDALRILRALRFSATLGFKIAPN-- 179
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ L + + + ++ + + L
Sbjct: 180 -----------TKRVVFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVIQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + ++ LR + P++ + C+
Sbjct: 229 EKIENLGFLKNAPLNLELR------LLGFFKHQKSLENLRYPKKTCVLFLKAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ + +KK L
Sbjct: 283 NIHNKTELKFLLKNYDLEPFNLALDFYALKNPKHALKIKSLLKEIFNANEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +K+G IL C I L L+
Sbjct: 343 GGTLQSLGYQH-QKIGEILNACLNLVIAHPKNN---ALEWLIE 381
>gi|188586271|ref|YP_001917816.1| CBS domain containing protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350958|gb|ACB85228.1| CBS domain containing protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 890
Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats.
Identities = 78/409 (19%), Positives = 149/409 (36%), Gaps = 24/409 (5%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
I +K K VGG +RD L+ DID+ ++ SK + T +
Sbjct: 478 IGQKADKEGFKVYGVGGFIRDLLLGKDNLDIDLVIEQDAISFAKLVSKHLNGDLKTFSQF 537
Query: 78 GTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136
T ++ R D T R + + V K D RRDFTIN L +
Sbjct: 538 QTARLTLRSGTRIDFATARIEYYAFPAASPEVEESTIKQDLYRRDFTINTLAVELNCNSF 597
Query: 137 DYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
+ K + + +ED RI R RF + + + + +
Sbjct: 598 GKLLDFFGGTKDLKKGVIRVLYNLSFVEDPTRIFRAIRFESRFNFNIEEQTLIFIKNSLE 657
Query: 195 KGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
G+ L ER++ E+ +++ +N M GIF +IF ++ +S D+L ++
Sbjct: 658 TGVLDKLPGERLYEELRNIVDEDEAVNTFRRMDELGIFTKIFPNL-NVSQDKLVKLQNIY 716
Query: 254 QVFEW-------KIDSLLRFIVL-----ISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+ W K + + + + Q I S+ ++ +P++IR +I+
Sbjct: 717 DILNWYERENKQKQEKFVSKEAMVFSCLLQDQPLPIISSILERLKVPQKIRDVIITTVKE 776
Query: 302 NFNQKTLSIP-EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ + E +++ + + LA N ++ +
Sbjct: 777 TESLSSKLEYTEKNSELVQNLEEIPLETILFVLADKENQKIKN------KIYYYLEELIG 830
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+TG+D+ GI PG L ++ ++ +E+L ++L
Sbjct: 831 AGVSITGEDLKTLGIKPGPVYKTALEEVRKARLDGLVTTPEEELEYVLD 879
>gi|288575114|ref|ZP_06393471.1| CBS domain containing protein [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570855|gb|EFC92412.1| CBS domain containing protein [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 876
Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats.
Identities = 70/422 (16%), Positives = 142/422 (33%), Gaps = 24/422 (5%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
L I ++ + +VGG VRD L++ V D+D+ ++ + +
Sbjct: 459 DRELLKTIGRRAHEMGMAAYVVGGVVRDLLLDRPVTDLDVVVEGDATGFIKSWERDGA-D 517
Query: 71 IPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + T I + D+ T R + V + K D RRDFT+NA+
Sbjct: 518 VSLHGRFKTGTIAFPDGRKVDVATARREFYEFPTAQPTVSSDSLKHDLYRRDFTVNAMAL 577
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEK-NIDSDG 186
G+ + R + + +ED RI R R G + ++
Sbjct: 578 SIGGETWGTLIDYFGGRRDILSRKLRTLHNLSFVEDPTRIFRGVRLEQRLGFDLDDNALR 637
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-----EI 241
+ + LS R+ SE+ L+ P + M G+++ +F +
Sbjct: 638 TMKNCVRGGLFGGLSGFRLRSELEISLKEPRPWPIVKRMAELGLWEPLFPGIHLGNRVAR 697
Query: 242 SLDQLS--QVIEAEQVFEWKIDSLLRFIVLI----SWQDKKSILSMAKKFSLPRE-IRYF 294
+L +LS + A+++ D + + + + + R +R
Sbjct: 698 TLRRLSVARGRMAKELIPLGDDLWIAPLAALLQEGPDDLWPRVADRLNLGARERFLLRMS 757
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ S + ++ D + L L + F ++L
Sbjct: 758 IDGLGGAEEAIGGRSPRKNSEIVTFLRDVSPVVALYWAL-------STARWRFRRRILLY 810
Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ K L+G D++ G G +VG IL ++ + +++ + R
Sbjct: 811 LTRLIKVKPMLSGSDILAMGYSEGPRVGKILDSLLLARLDGAVDTRDDEIAWVTRNFKRE 870
Query: 415 SQ 416
+
Sbjct: 871 VE 872
>gi|269792361|ref|YP_003317265.1| CBS domain containing protein [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269099996|gb|ACZ18983.1| CBS domain containing protein [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 867
Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats.
Identities = 79/399 (19%), Positives = 154/399 (38%), Gaps = 19/399 (4%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC- 84
K +VGG VRD L+ +D+D+ ++ S + + YGT +
Sbjct: 472 GLKVFLVGGFVRDLLLGRPNEDVDMVCEGDAVPLLERLSSMGLQ-VSIHRRYGTGTVRFP 530
Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV---IDYVGG 141
+ D+ T R + V K D RRDF++NA+ + +DY GG
Sbjct: 531 DGRKLDLATARREFYEYPVAQPKVQMDSLKHDLYRRDFSVNAMAVSLSPRWGMLVDYFGG 590
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNIDSDGLVASIKAKKGLKIL 200
DL ++ + + +ED RILR R G + D++ L AS L +L
Sbjct: 591 RGDLNRGQLRVLH--NLSFVEDPTRILRGVRLEGRLGFRMSQDTERLAASCVKGGMLSLL 648
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL--DVQEISLDQLSQVIEAEQVFEW 258
S ++ SE+ + +NP+ A+ + G + +F + L L ++ +
Sbjct: 649 SGPKLRSELELIFRERNPIWAVDRLCGLGAWDAMFPGVPLSIDGLRALRKLDVFVRRLGR 708
Query: 259 KID------SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ L L+ + + S + SL ++ R L + N +T +
Sbjct: 709 DLPPLGEESWLAFLGALLYFGNPWGGRSAMDRLSLSQKERGVLEAILNGLGTLETAIGGK 768
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ + + + + +T + ++L + K L+G D++
Sbjct: 769 GDIRWSSLCR--ALDGVNRVVLFAWAGITSR-WRVRRRILLYLTRLCKVSPMLSGRDLID 825
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
G+P G VG +L + ++ +++ +L++L
Sbjct: 826 LGVPKGPAVGAMLSRLRFARLDGEVDTLEDERAWVLKRL 864
>gi|294782920|ref|ZP_06748246.1| poly(A) polymerase [Fusobacterium sp. 1_1_41FAA]
gi|294481561|gb|EFG29336.1| poly(A) polymerase [Fusobacterium sp. 1_1_41FAA]
Length = 451
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 100/439 (22%), Positives = 176/439 (40%), Gaps = 49/439 (11%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I IL LNK K IVGGA+RD L+ L +DID T + + + +FS+ K T
Sbjct: 14 IEILRKLNKYG-KGYIVGGAIRDILLGLKPKDIDFTTNLPYETLKDLFSEYNPK--ETGK 70
Query: 76 SYGTIKIICRKKYFDITTLRSDLITD-------GRYAKVVFTRDWKADSLRRDFTINALY 128
++G ++I ++I R D + KV F D K D RRDF+INA+
Sbjct: 71 AFGVLRIRVNDTEYEIAKFREDKYEEKDGLKIVPEDNKVDFVDDIKEDLSRRDFSINAMA 130
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
++ ++D G D+ N+ I F+G+A RI+ED LRILR FRF + G ++ + +
Sbjct: 131 YNEVDGIVDLYNGQKDIENKVINFVGNAEERIVEDPLRILRAFRFMSRLGF-SLSENTIE 189
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K K LK + ERI E +KLL +N N + M + G+ + I + + +
Sbjct: 190 AIKKQKDLLKSIPEERITIEFSKLLLGENVKNTLTAMKDTGVLELIIPEFKATYDFEQHN 249
Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQ----------------------DKKSI 278
+F D LR+ L+
Sbjct: 250 PHHNLDLFNHIISVVSKVPADLELRYTALLHDIAKPLVQTFDEKGIAHYKTHEIVGADMA 309
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ + LP ++ + + + ++ + KL G ++ ++ A +
Sbjct: 310 RDILTRLKLPVKLIETVEDIIKKHMVLYRDVTDKKFNKLLSEMGYDNLLRLIEHCNADNS 369
Query: 338 NNLTH------QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
+ + + + + L G D++ G G ++G I +
Sbjct: 370 SKNNEVVNPENDLHERLKRAVEKQMQVTVNDLALNGKDLIDMGFK-GTEIGKIKGELLDK 428
Query: 392 WINSSFQLSQEDLHHLLRK 410
+++ +E + +R+
Sbjct: 429 YLSEEIPNEKEVMLAYVRE 447
>gi|203284602|ref|YP_002222342.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Borrelia duttonii
Ly]
gi|201084045|gb|ACH93636.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Borrelia duttonii
Ly]
Length = 432
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 107/406 (26%), Positives = 169/406 (41%), Gaps = 18/406 (4%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ D+I I + N + +VGGA+RD L+ D D T P +M++F K
Sbjct: 31 NTKDIIKISQIFNNHNYEFFLVGGALRDLLLKKIPYDFDFTTNATPKEIMKLFPKN---- 86
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALY 128
I T I +GTI II KK F+ITT R D+ + + + FT++ K D RRDFTINA+
Sbjct: 87 IQTGIKHGTISIIFNKKIFEITTYRIDIDYENKRSPKQIKFTKNLKEDLKRRDFTINAIA 146
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
++IDY G DL + IK IG+ + R ED LRILR RF + + +
Sbjct: 147 MHTLNFEIIDYYNGQQDLNKKIIKCIGNPNKRFEEDALRILRAARFASTLNFTIDKNTLI 206
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
K L LS ERI +E KLLE +NP I ++ FK +++
Sbjct: 207 SMKYKKNNILF-LSKERINNEFIKLLEGENPTKGIKYLQKINFFKYF------FNIEINK 259
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF---FNCNFN 304
++I+ + L ++ QD ++ K + ++ + N
Sbjct: 260 KLIKKITLLNKNKFYLKAIVIFTIKQDISNLKQNLKLLKFSNKDIKLILLYKTTINAIHK 319
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH-WKKPLF 363
+ I+ + L I+ AL N + ++ +
Sbjct: 320 LNPKKLHHIRIFLSKTTRENYKETLDIYKALKGKNNKFKFITNKIKNNKLLRDPLSLKEL 379
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ G+DV K+ + K G IL H E + +E L ++
Sbjct: 380 QINGNDVQKFQLRTHKNTGIILNHLLNEVLIEPKLNKKEILLQKIK 425
>gi|308184427|ref|YP_003928560.1| putative polynucleotide adenylyltransferase; putative poly(A)
polymerase [Helicobacter pylori SJM180]
gi|308060347|gb|ADO02243.1| putative polynucleotide adenylyltransferase; putative poly(A)
polymerase [Helicobacter pylori SJM180]
Length = 402
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 78/403 (19%), Positives = 138/403 (34%), Gaps = 25/403 (6%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEKGLKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + F+ D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSAHLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N + N+TI+ +G A R ED LRILR RF A G K S
Sbjct: 122 IAYSPTKGLIDPFKGQNAIENQTIECVGGARLRFFEDALRILRALRFSATLGFKIAPS-- 179
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + ++ + + L
Sbjct: 180 -----------TKEAVFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVTQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + + LR + P++ C+
Sbjct: 229 EKIENLGFLKNAPFNLELR------LLGFFKHQKSLENLRYPKKTCVLFAQAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ +KK L
Sbjct: 283 NIHSKTELKFLLKNYDLEPFNLALDFYALKNPKHALKIKRLLKEIFDSNEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +K+ IL C I + L L++
Sbjct: 343 GGALQSLGYQH-QKISEILNACLNLVIENPKNN---ALEWLIK 381
>gi|303237316|ref|ZP_07323886.1| HDIG domain protein [Prevotella disiens FB035-09AN]
gi|302482703|gb|EFL45728.1| HDIG domain protein [Prevotella disiens FB035-09AN]
Length = 474
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 82/462 (17%), Positives = 162/462 (35%), Gaps = 55/462 (11%)
Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66
K+ I +K + +VGG VRD + DID+ V KT
Sbjct: 10 AKFIDKDIFHKISDAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGISVANELKKT 69
Query: 67 RYKV--IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
K I ++GT ++ R + R + + +V + D RRDFTI
Sbjct: 70 LGKRAHISVFHNFGTAQVKLRGMEVEFVGARKESYSHDSRKPIVEDGTLEDDQNRRDFTI 129
Query: 125 NALYAD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
NA+ G+++D GG++DL + I+ D +D LR++R RF
Sbjct: 130 NAMAVCLNKEHFGELVDPFGGVDDLWDGIIRTPLDPDITFSDDPLRMMRCVRFATQLNFF 189
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-- 238
I+ + A + + +KI+S ERI E+NK++ K P + +Y G+ + I ++
Sbjct: 190 -IEDETFEALERNAERIKIVSGERIADELNKIMATKTPSKGFIDLYRCGLLQIILPELVA 248
Query: 239 ---------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKF 285
+ + + + LR+ L K F
Sbjct: 249 MDVVETRNGRAHKNNFYHTLEVLDNAARTTDKLWLRWAALFHDIGKPKSKRWDASIGWTF 308
Query: 286 SLPREI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
I ++ + + ++ E+
Sbjct: 309 HSHNIIGAKMIPTIFKRLKFPMDTKMKYVRKLVDLHMRPIIIADEEVTDSAVRRLMNDAG 368
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK- 372
+ + L ++T ++ + L + ++ + GD++++
Sbjct: 369 DDIDDLMTLCEADITSKNAARKQRFLDNFKTVREKLEDLKERDYKRLLQPCIDGDEIMEI 428
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ + P ++VG + K+ +++ +E L LL++ A
Sbjct: 429 FNLKPSREVGELKKALKEAVLDNRVPNEREPLMALLKEKAAE 470
>gi|295111141|emb|CBL27891.1| uncharacterized domain HDIG [Synergistetes bacterium SGP1]
Length = 456
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 78/461 (16%), Positives = 141/461 (30%), Gaps = 83/461 (18%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSL-------------------MNLSVQDIDIAT 52
+ ++ L + VGG VRDSL ++ + D DIAT
Sbjct: 4 TPAALKAVAALRHAGFDAYPVGGCVRDSLVPLIGTPQNPSDPASVRAILDCAPSDWDIAT 63
Query: 53 TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD 112
P+ V I + + T+ +ITT R
Sbjct: 64 NAAPEHVRSILG--GRLAAKPGLRHDTVMTSVDGTPVEITTFRGGAA------------T 109
Query: 113 WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
+ D RDFT+NA+ + G+++D GG ND+R+ ++ +GD R ED LRILR R
Sbjct: 110 IEEDLACRDFTVNAMALNADGRLLDPFGGANDIRSGVLRAVGDPAERFREDGLRILRGLR 169
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
F A +G LV ++ I + L +
Sbjct: 170 FAAVFGWDIEPDTALVMHMEKDLLRDIAVERTRAELVKMLCGVHVGPVLRK---FWNVLS 226
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKID--------SLLRFIVLISWQDKKS------- 277
++ + + V++ I +LR L+ K +
Sbjct: 227 VAAPEIAPTVGFRQNNRHHHLDVWKHTIAVVEAAPAVPILRLAALLHDLGKPACYTVDAA 286
Query: 278 ---------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
+ + EIR +++ + + L+ ++
Sbjct: 287 GIGHFYGHAARSAEIARDIMARLRFSDEIRRRVVTLVEHHGDI--LTDTPSRRTVRRMVS 344
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSD--------------IIHWKKPLFPLTGD 368
+ + LAL ++ + ++ + + G
Sbjct: 345 NLGVDVFHDLLALRRADIAGHKVETCGKAMAACVRFEELLAELEAENACFSLKDLAVRGG 404
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D+++ G G +G L + +E L LLR
Sbjct: 405 DIMELGYR-GPGIGKALRALLDAVVEERVPNEREALLELLR 444
>gi|254233393|ref|ZP_04926719.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis C]
gi|124603186|gb|EAY61461.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis C]
Length = 514
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 80/424 (18%), Positives = 153/424 (36%), Gaps = 55/424 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
H + L + S+ + +VGG+VRD+L+ D+D T P+RV I V
Sbjct: 21 HAALLRELGSVFAAAGHELYLVGGSVRDALLGRLSPDLDFTTDARPERVQEIVRPWADAV 80
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
T I +GT+ + +ITT R+D R+ +V F + D +RRDFT NA+
Sbjct: 81 WDTGIEFGTVGVGKSDHRMEITTFRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAV 140
Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
G+ +D +GGL LR + + +D LR+LR RF + G +
Sbjct: 141 RVTATGPGEFLDPLGGLAALRAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLGF-AVAPR 199
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
A + L +S+ER+ +E++KLL ++P I M G+ + ++
Sbjct: 200 VRAAIEEMAPQLARISAERVAAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRMAI 259
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------- 281
+++ L+ + +A + + D +LR+ L+ K +
Sbjct: 260 DEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHH 319
Query: 282 -----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIA 327
+ +++ + + + Y+ ++
Sbjct: 320 EVVGAKMVRKRMRALKYSKQMIDDISQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGALLP 379
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIP 376
+L + + + + + L G+ ++ IP
Sbjct: 380 RLHKLVRADCTTRNKRRAARLQASYDRLEERIAELAAQEDLDRVRPDLDGNQIMAVLDIP 439
Query: 377 PGKK 380
G
Sbjct: 440 GGPA 443
>gi|228471468|ref|ZP_04056253.1| polyA polymerase family protein [Porphyromonas uenonis 60-3]
gi|228306736|gb|EEK15881.1| polyA polymerase family protein [Porphyromonas uenonis 60-3]
Length = 501
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 83/448 (18%), Positives = 162/448 (36%), Gaps = 55/448 (12%)
Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66
+ + + + + ++ +VGG VRD + DIDI + + ++
Sbjct: 25 SPYLRHPVFALVGRVADALDLETYVVGGWVRDLFLQRPSSDIDIVCVGSGIALAKAVARE 84
Query: 67 RY--KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ ++GT ++ + + R + +V + D RRDFTI
Sbjct: 85 IGPKCQVHVFANFGTAQLRYKGVEVEFVGARRESYQRDSRKPIVEDGTLEDDQERRDFTI 144
Query: 125 NALYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
NA+ + D GL DL++ I+ D +D LR++R RF + G
Sbjct: 145 NAMAISLNERTYGELVDPFYGLEDLQDYMIRTPVDPQVTFDDDPLRMMRAVRFASQLGFF 204
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
ID A +K ++ +KI+S+ERI E+NK++ + P + M G+ + I +VQ
Sbjct: 205 -IDDAVFDAIVKLRERIKIVSAERIIVELNKIMLSPRPSVGLSLMEQTGLLELILPEVQL 263
Query: 241 I----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMA----KKF 285
+ D L+ + K D+L LR+ L+ K F
Sbjct: 264 LRGTETVVGVGHKDNLAHTYQVVDQLAAKSDNLYLRWAALLHDIAKPKTKRWDAQQGWTF 323
Query: 286 SLPREI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
I ++ + + +L +
Sbjct: 324 HNHNYIGAKMVPRMFRRLKLPLDSHMQYVAKLVDLHMRPSSLVDEGVTDSAIRRLLFDAG 383
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL-------------FPLTGDDVVKY 373
++ + L +++T ++ + QVL + ++ L P+ G ++++
Sbjct: 384 DDIEDLMTLVESDVTSKNPKRVQQVLDNYQVIRRKLQEVEEKDRIRNFAPPIDGAEIMRL 443
Query: 374 -GIPPGKKVGNILVHCKQEWINSSFQLS 400
GIPP + VG + K ++
Sbjct: 444 FGIPPSQIVGTLKERIKNAILDGEIPNE 471
>gi|310825989|ref|YP_003958346.1| poly(A) polymerase [Eubacterium limosum KIST612]
gi|308737723|gb|ADO35383.1| poly(A) polymerase [Eubacterium limosum KIST612]
Length = 415
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 93/409 (22%), Positives = 144/409 (35%), Gaps = 19/409 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + + K + IVGGAVRD L+ + D D T LPD V F I
Sbjct: 3 KAIETLFQVFRKHHKQLFIVGGAVRDMLLGKAPSDYDFTTDALPDEVESWFEH----TIT 58
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYAD 130
+GTI +I KK ++ITT R + DGR+ V FT D + D RRDFTIN L D
Sbjct: 59 VGKHFGTIGVIMDKKVYEITTFRKEASYADGRHPDEVLFTDDVREDVSRRDFTINGLLMD 118
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF--FAHYGEKNIDSDGLV 188
++G V DYVGGL D+RN ++ IGD R ED LR R R +
Sbjct: 119 ERGCVFDYVGGLEDIRNGMVRCIGDPKKRFEEDRLRKWRCIRLAAEKRMELDERTRSAIR 178
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ + + A I G + + + + D L
Sbjct: 179 DNPDTAGVSIERIRGELTRIMLCEKVAWGGYLLIKTELLGDLLNRMVPEYWKRCEDYLID 238
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
E K+ LR + + ++ + + L F + +
Sbjct: 239 GFEIMGYLPKKLP--LRLAAFLLNMFPEERRVFLREMRYSNKEK-QLAYGFCHHVVADSQ 295
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT---HQDTCFILQVLSDIIHWKKP---- 361
K+ G + L L Y + + +V I ++P
Sbjct: 296 DSVAFKEALADIGMENAEDFLAFQDGLAYWDGDPSIKRAAEQNQRVYRRIAANREPMTLR 355
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ G D+ G G+ + L + + ++ L L +
Sbjct: 356 ELAVNGKDLTDRGYQ-GEAIKESLTRLLKRVYEYPEENKKDRLLAWLER 403
>gi|222100844|ref|YP_002535412.1| TRNA nucleotidyl transferase-related protein [Thermotoga
neapolitana DSM 4359]
gi|221573234|gb|ACM24046.1| TRNA nucleotidyl transferase-related protein [Thermotoga
neapolitana DSM 4359]
Length = 864
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 84/401 (20%), Positives = 145/401 (36%), Gaps = 25/401 (6%)
Query: 13 SDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
L+N+ LL K D+ +VGG VRD L+ + DIDI K
Sbjct: 453 PRLLNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIENLDIDIVVEGNAMEFAEYAKKFLP 512
Query: 69 KVIPTSISYGTIK-IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + T + DI T R + V K D RRDFTINA+
Sbjct: 513 AKLVKHEKFMTASLFLKGGLRIDIATARMEYYESPARLPDVEMSTIKKDLYRRDFTINAM 572
Query: 128 YADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
++D+ GG DL+ I+ + ++D RILR RF + +
Sbjct: 573 AIKLNPGDFGLLVDFFGGYRDLKEGIIRVLHT--LSFVDDPTRILRAIRFEQRFDFHIEE 630
Query: 184 SDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI- 241
+ + ++G + + RI EI K+LE KNPL +I M + K +F
Sbjct: 631 TTERLLRQAVEEGYLEKTTGARIRQEIEKILEEKNPLKSIRRMAEFDVIKHLFPKTYYTP 690
Query: 242 -----SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ + E+ F V + + D++S + K++SL + + +
Sbjct: 691 VMDRKMENLFRNIPWVEENFGEVNKFYAVLHVFLEFYDEESWEGVKKRYSLKKNLINEVK 750
Query: 297 SFFNCNFNQKTL-SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
+ Y V + FLA + +L++
Sbjct: 751 HVEKSAQALLEMLKEGVPTSFIYPLVKGVSNETICHFLAYLEGEEEEKFKAHLLKIRDTK 810
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
+ + G+ +++ GI GK +G +L + ++
Sbjct: 811 LEK------IDGNYLIEKGIKSGKIIGEVLEKILMKKLDGD 845
>gi|262067034|ref|ZP_06026646.1| poly(A) polymerase [Fusobacterium periodonticum ATCC 33693]
gi|291379243|gb|EFE86761.1| poly(A) polymerase [Fusobacterium periodonticum ATCC 33693]
Length = 451
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 98/439 (22%), Positives = 175/439 (39%), Gaps = 49/439 (11%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I IL LN+ K IVGGA+RD L++L +DID T + + + +FS+ K T
Sbjct: 14 IEILRKLNEYG-KGYIVGGAIRDILLDLEPKDIDFTTNLPYETLKDLFSEYNPK--ETGK 70
Query: 76 SYGTIKIICRKKYFDITTLRSDLITD-------GRYAKVVFTRDWKADSLRRDFTINALY 128
++G ++I ++I R D + KV F D K D RRDF+INA+
Sbjct: 71 AFGVLRIRVNDTEYEIAKFREDNYEEKDGLKIVPEENKVDFVEDIKEDLTRRDFSINAMA 130
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
++ ++D G D+ N+ I F+G+A RI+ED LRILR FRF + G ++ + +
Sbjct: 131 YNEVDGIVDLYNGQKDIENKIINFVGNAEERIIEDPLRILRAFRFMSRLGF-SLSENTIE 189
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K K L + ERI E +KLL +N N + M + + + I + +
Sbjct: 190 AIKKQKNLLTSIPEERITMEFSKLLLGENVKNTLTAMKDTEVLELIIPEFKATYDFNQYN 249
Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQ----------------------DKKSI 278
+F D LR+ L+
Sbjct: 250 PHHNLDLFNHIISVVSKVPADLELRYTALLHDIAKPLVQTFDEKGIAHYKTHEIVGADMA 309
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ + LP ++ + + + ++ + KL G ++ ++ A +
Sbjct: 310 RDILTRLKLPVKLIDAVEDIIKKHMVLYRDVTDKKFNKLLSEMGYDNLLRLIEHCNADNG 369
Query: 338 NNLTH------QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
+ + + + + L G D+V G G ++G I ++
Sbjct: 370 SKNNEVVNPENDLHERLKRAVEKQMQVTVNDLALNGRDLVDMGFK-GTEIGKIKGELLEK 428
Query: 392 WINSSFQLSQEDLHHLLRK 410
+++ +E + +R+
Sbjct: 429 YLSEEIPNEKEAMLAYVRE 447
>gi|220904454|ref|YP_002479766.1| polynucleotide adenylyltransferase protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868753|gb|ACL49088.1| Polynucleotide adenylyltransferase region [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 905
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 79/421 (18%), Positives = 140/421 (33%), Gaps = 21/421 (4%)
Query: 12 DSDLINILSLL-NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+L+++ L VGG VRD L+N + QDID+ + + +
Sbjct: 468 AKNLLHLAGRLGRDLGLPVYAVGGFVRDLLLNRANQDIDLVVEGNGIALAKALAAELGGR 527
Query: 71 IPTSISYGTIKIICRK-----KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + T +I + D+ T R + V K D RRDF+IN
Sbjct: 528 VREHQEFLTSVVIFKDAEGRESRIDVATARLEYYEYPAALPTVELSSIKMDLFRRDFSIN 587
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNID 183
AL + + + I +ED R LR RF Y +
Sbjct: 588 ALAVRLDSTPFGQLVDFFGGQRDIKERIIRVLHTLSFVEDPTRCLRAVRFEQRYDFRIGA 647
Query: 184 SDGLVASIKAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ K + LS R++ E + + +NPL + + GI I +
Sbjct: 648 GSEKLIKNAMGLKLMDRLSGPRLFHEFKLICDEENPLACLERLDQLGILPAIAQQLALTP 707
Query: 239 -QEISLDQLSQVIEAEQVFEW---KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294
+ L++L ++ ++ + L+ F+ L + ++ LP R
Sbjct: 708 GKRKILEELQDMLSWYRLLYFEKMPQPWLVYFLGLCHGLPYVETSVLYRRMGLPENKRND 767
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI---FLALHYNNLTHQDTCFILQV 351
++ + K+ ++ L +L Y D +
Sbjct: 768 ILGQREQMRTVRGRLENRQKRQGVQEFKVSVLHGLLAPLSLESLLYLMAETNDEGLQKNL 827
Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
I W+ +TG+D+ G+ PG IL Q ++ +E L L R L
Sbjct: 828 SRYITQWRHEKVDITGEDLKNMGLSPGPLFSQILRAVLQAKLDGETPGREEQL-ALARSL 886
Query: 412 I 412
Sbjct: 887 A 887
>gi|108563048|ref|YP_627364.1| poly(A) polymerase [Helicobacter pylori HPAG1]
gi|107836821|gb|ABF84690.1| poly(A) polymerase [Helicobacter pylori HPAG1]
Length = 425
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 79/403 (19%), Positives = 142/403 (35%), Gaps = 25/403 (6%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + +L + + K + +VGG VRD LM ++ +D D+ + L + I +
Sbjct: 2 FELEKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKEILLNNHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + F+ D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSSRLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N + N+ I+ +G A R ED LRILR RF A G K + S
Sbjct: 122 IAYSPTKGLIDPFKGQNAIENQVIECVGGARLRFFEDALRILRALRFSATLGFKIVPS-- 179
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + ++ + + L
Sbjct: 180 -----------TKEAVFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVIQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + ++ LR + Q + P++I + C+
Sbjct: 229 EKIENLGFLKNAPLNLELRLLGFFKDQ------KSLENLRYPKKICVLFLKAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
K D F L + + ++ +KK L
Sbjct: 283 NTHNKTELKFLLKNYDLEPFNLALDFYVLENPKHALKIKGLLKEIFDSNEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +K+G IL C I + L L++
Sbjct: 343 GGALQSLGYQH-QKIGEILNACLDLVIENPKNN---ALEWLIK 381
>gi|34581025|ref|ZP_00142505.1| poly(A) polymerase [Rickettsia sibirica 246]
gi|28262410|gb|EAA25914.1| poly(A) polymerase [Rickettsia sibirica 246]
Length = 418
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 127/440 (28%), Positives = 193/440 (43%), Gaps = 72/440 (16%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLM----NLSVQ---------------------------- 46
+SLLN+ ++ ++GG VRD+L+ N + +
Sbjct: 1 MSLLNEKG-QARLIGGCVRDALLDLLHNKTNKEEFEGDTERRIAMYINVREDSSTGSTYK 59
Query: 47 -----------------DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
DIDIAT + P V I S + K IPT + +GTI I + F
Sbjct: 60 LPLEASYPRDRLEKGSCDIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTITAILNNEKF 119
Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYVGGLNDLRNR 148
+ITTLR D+ +GR+AKV+FT D+ D+ RRDFTINAL ++ DY G DL+
Sbjct: 120 EITTLRKDIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQQE 179
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208
+ FIG+A +RI EDYLRILRFFRF ++Y + +D A K GLK LS ERI SE
Sbjct: 180 KVVFIGEALYRIKEDYLRILRFFRFSSYYANQ-LDDGNFKACKALKDGLKTLSRERIKSE 238
Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++K++ +K + M+ GI + IF +Q + Q + + + LL
Sbjct: 239 MDKIIVSKRAAQILKAMFEIGILELIF-SIQNYEIKFFEQANDFKLELVTRYALLLYCQK 297
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ L + + + ++S N + K + K
Sbjct: 298 DLN-------LKVFLDWKFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNY--------K 342
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
+ A L H + ++ P F L G+D++ I KK+G L +
Sbjct: 343 EYLLAARIIGKLNHSQVKEFILKYDALLR---PKFQLNGNDLLNMNIEK-KKIGAKLEYL 398
Query: 389 KQEWINSSFQLSQEDLHHLL 408
K WI F+ S+ +L L
Sbjct: 399 KNFWIEQDFKPSKLELLAKL 418
>gi|319442217|ref|ZP_07991373.1| tRNA nucleotidyltransferase [Corynebacterium variabile DSM 44702]
Length = 485
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 84/473 (17%), Positives = 158/473 (33%), Gaps = 71/473 (15%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
HD L + +VGG+VRD+L+ D+D T P+ V I + V
Sbjct: 12 HDRTLTALAGAFATRGHSLFLVGGSVRDALLGRLSHDLDFTTDARPEVVTGILDEVASTV 71
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYA 129
T I++GT+ + +ITT R+D R +V + D +RRDF NA+
Sbjct: 72 WDTGIAFGTVSGLIHGMTVEITTFRADQYDGSSRNPEVTYGTSLDEDLVRRDFRGNAIAL 131
Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ ++ D + GL DL N + +D LR+LR RF + G +
Sbjct: 132 ELSADGAHELRDPLNGLEDLVNGVLDTPAAPEQSFHDDPLRMLRACRFASQLGF-EVAPR 190
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
A + + ++ ER+ +E++KL+ P + M GI + ++
Sbjct: 191 VQDAMTRMAAEIDRITVERVAAELDKLMLGAEPWTGLDLMVATGIAAHVLPELPALQLTQ 250
Query: 239 ---------QEISLDQLSQVIEAEQVFEWKID------------SLLRFIVLISWQDKK- 276
SL L V E E + +LR+ L+ K
Sbjct: 251 DEHRQHKDVYAHSLQVLRNVTELEGRLAGDPEEAEDAEALDHRRLVLRWAALMHDCGKPA 310
Query: 277 ---------------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
K P++ + +
Sbjct: 311 TRAFTESGAVTFHHHEVVGARMTRKRLKALKFPKKTTEEIGQLVFLHMRFHGYGEGAWTD 370
Query: 316 ---LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV----------LSDIIHWKKPL 362
Y+ ++ +L++ + + + +V L +
Sbjct: 371 SAVRRYVTDAGDLLPQLQLIVRADCTTRNKRKAARLQRVCDDLDARIVELKEKEDLAAVR 430
Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
L G+++++ G+ PG +VG + K+ ++ + ++ L+
Sbjct: 431 PELDGNEIMEILGLAPGPEVGKAWAYLKELRLDRG-PMEHDEAVAALKDWWKD 482
>gi|56963834|ref|YP_175565.1| tRNA CCA-pyrophosphorylase [Bacillus clausii KSM-K16]
gi|73619751|sp|Q5WGA1|CCA_BACSK RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|56910077|dbj|BAD64604.1| poly(A) polymerase [Bacillus clausii KSM-K16]
Length = 376
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 79/392 (20%), Positives = 143/392 (36%), Gaps = 31/392 (7%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76
+ LN ++ IVGGAVRD L+ V D+DIAT P +V IF+K + +
Sbjct: 9 KAVRTLNAAGFEAYIVGGAVRDYLLGKDVDDVDIATQASPHQVADIFTKG----VHINQE 64
Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136
+ T+ I K +ITT + + D +RDFTINAL + +VI
Sbjct: 65 HKTVLIPGEKGPIEITTYKGE--------------TLAEDLQKRDFTINALAMTETREVI 110
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
D GG DL+ R ++ R+ ED LR+LR RF + G + +++
Sbjct: 111 DPYGGRQDLQKRLLRSYDAQK-RLSEDPLRMLRAARFISSLGFEADRQLVKETTVQKAAL 169
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
+ + L + G I + + + L +L ++ +Q +
Sbjct: 170 QRCARERVVVELEKLLKGMETEAAFAFLQETGAIHSLPGIQITDSQLAELMRLP--KQQW 227
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+ + L F + + +++ + F Q+ S +
Sbjct: 228 DSGDRAWLEFAICTGGPSSMAA---LPLPKKRKQLVAAGLKAFEYRQTQQRWSDWQ---- 280
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376
Y+ G + ++I L + + S + K +TG D++
Sbjct: 281 LYISG---LAIAMQIEEIRAGRQLPSIQKEELAEQWSALPIKAKSDLAITGRDLLHAKAA 337
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
PG + L ++ + + + L
Sbjct: 338 PGPWMKEALQAAEKAVVTKKCPNEKAAILAFL 369
>gi|315023502|gb|EFT36508.1| tRNA nucleotidyltransferase [Riemerella anatipestifer RA-YM]
gi|325335276|gb|ADZ11550.1| tRNA nucleotidyltransferase/poly(A) polymerase [Riemerella
anatipestifer RA-GD]
Length = 476
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 74/453 (16%), Positives = 156/453 (34%), Gaps = 60/453 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYK-- 69
I + + + IVGG VRD LM DID T + + +K
Sbjct: 14 KLFKTISKVAEERGQTAYIVGGYVRDLLMKRQVPTDIDFVTEQSGIELAQAVAKELDSNL 73
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ +YGT I + + R + ++ V + D RRDFTINA+
Sbjct: 74 KVSVFKTYGTAMIKWKGLELEFVGARKESYSEDSRKPAVEQGSLEDDQKRRDFTINAMAI 133
Query: 130 ----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ G+++D GG+ DL ++ +K + +D LR++R RF + ++ +
Sbjct: 134 SLGKEDFGRLVDPFGGVQDLESKILKTPLEPLQTYSDDPLRMMRAIRFASTLNF-KVEQN 192
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---- 241
L A + +KI+S ERI E NK++ ++ P + + + G+ ++I ++ +
Sbjct: 193 SLDAIKQEADRIKIVSMERIMVEFNKIMLSEKPSIGLKLLDDTGLLEKIIPELTALKGIE 252
Query: 242 -------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS---------MAKKF 285
+ + + + + LR+ L+ K +F
Sbjct: 253 EIEGQTHKDNFYHTLEVVDNISKHTDKLWLRWSALLHDIGKAPTKKFVDGTGWTFHGHEF 312
Query: 286 SLPREIRYFLISF-------------------FNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ + S +++L + G+ +
Sbjct: 313 LGSKMAKPLFQRLKLPLGADLKYVQKMVKLSSRPIALVTDDTSDAALRRLLFDAGED--L 370
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----------LFPLTGDDVVKYG-I 375
L + + + K P++G++++ +
Sbjct: 371 EDLFTLCKADITTKNTKKQERFRKNFEYVAQKIKEVEEKDQIRNFQPPISGEEIMALFQL 430
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
PG+++G + K+ + + E+ +
Sbjct: 431 KPGREIGILKEKVKEAILEGEISNTPEEAKDFV 463
>gi|145219609|ref|YP_001130318.1| metal dependent phosphohydrolase [Prosthecochloris vibrioformis DSM
265]
gi|145205773|gb|ABP36816.1| metal dependent phosphohydrolase [Chlorobium phaeovibrioides DSM
265]
Length = 470
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 80/452 (17%), Positives = 154/452 (34%), Gaps = 58/452 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPT 73
L I + ++ +VGG VRD ++ DIDI P + + K
Sbjct: 9 LFRIGDIADRSGMDCYLVGGFVRDMILQRPCTDIDIMVIGDPVPFAKQIREELHGKNFVL 68
Query: 74 SISYGTIKIICRK-----KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ T ++ ++ R + + T + D RRDFT+NAL
Sbjct: 69 FERFRTAQLEIPGPEGVHYKLELVGARKESYNPESRKPITLTGTLEDDLARRDFTLNALA 128
Query: 129 ADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ +ID GL DL+ ++ D +D LR++R RF A G +
Sbjct: 129 LCLNRQGRGDIIDQHNGLRDLKEEILRTPLDPEQTFSDDPLRMMRAARFAAQLGFTPAEE 188
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
K + I+S ERI +E K++ + P ++ ++ G+ +EI DV ++
Sbjct: 189 VIEAMET-MHKRITIVSRERISTEFLKIMSSPRPSVGLIILHQTGLLQEIMPDVATMAGI 247
Query: 245 Q-----------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------ 281
+ + + + LR L+ K +
Sbjct: 248 EQVDGMGHKDTLFHTFKVIDNLSPHTDNLWLRVAALLHDIGKPATKRFSKQHGWTFHGHD 307
Query: 282 ----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
++ P ++ + LS EI L
Sbjct: 308 AVGIRTAAKIFREMRWPMSHLDYVQKMIRLHHRPIPLSKEEISDSAVRRLMFDAGEDLID 367
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGIPP 377
+AL ++T ++ + +++++ + +K P+ G D++K GI
Sbjct: 368 LMALCRADVTSKNPRKVAKIMNNFTNVEKKIEEVGEKDLLAKWRPPIDGLDIMKELGIGE 427
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G+ +G I + I+ +E ++
Sbjct: 428 GRLLGTIKKQMENAIIDGRIPYDREAAITFIK 459
>gi|289642446|ref|ZP_06474591.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Frankia symbiont of Datisca glomerata]
gi|289507705|gb|EFD28659.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Frankia symbiont of Datisca glomerata]
Length = 539
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 88/470 (18%), Positives = 162/470 (34%), Gaps = 74/470 (15%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNL--SVQ-DIDIATTILPDRVMRIFSKTRYK 69
+ + +VGG+VRD+L+ D+D AT P++++ I
Sbjct: 23 PAADALGRVFADAGYSLYLVGGSVRDALLGRSGPSDADLDFATDARPEQILDIARAWADG 82
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
V I++GT+ ++ F++TT R++ R V + + D +RRDFT+NA+
Sbjct: 83 VWEAGIAFGTVGLVRSGVRFEVTTYRTEAYDRTSRNPTVAYGDTLEGDLVRRDFTVNAMA 142
Query: 129 ADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ ID GGL DL + ++ G +D LRILR RF A G +
Sbjct: 143 VSVPGHEFIDLFGGLGDLARKVLRTPGSPEASFDDDPLRILRAARFEAQLGLVPVPELVA 202
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--------- 238
+ + KI+S ERI E+ KL+ A +P+ + + + G+ + ++
Sbjct: 203 AMRSRTPRL-KIVSVERIRDELRKLMVAADPVAGLTRLVDVGVADIVLPELPALRMEIDE 261
Query: 239 -------QEISLDQLSQVIEAEQVF-------------EWKIDSLLRFIVLISWQDKKSI 278
+L L Q I E D +LR+ L+ K
Sbjct: 262 HHQHKDVYAHTLTVLRQAIALEDPPPSGGPDALKDPPPSGGPDEVLRWAALLHDIGKPRT 321
Query: 279 LSMAKK----------------------FSLPREIRYFLISFFNCNFNQK-----TLSIP 311
A P+++ + + +
Sbjct: 322 RRHAPGGGVSFHHHEVVGRDMTRKRLAALRFPKDVADAITLLVFLHLRFHGYGRGEWTDA 381
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD--------TCFILQVLSDIIHWKKPLF 363
+++ + G ++ + N + + L++
Sbjct: 382 AVRRYVHDAGPQLSRLHKLVRSDCTTRNRRKAEMLAATYDALEERIARLAEQEEIAAIRP 441
Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLS---QEDLHHLLR 409
L+GDD++ G+ PG+ VG H + + +L R
Sbjct: 442 ELSGDDIMALLGLTPGRLVGQARAHMLDFRFEAGLVGRAAAEAELFRWAR 491
>gi|261839532|gb|ACX99297.1| tRNA CCA-pyrophosphorylase [Helicobacter pylori 52]
Length = 402
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 76/403 (18%), Positives = 140/403 (34%), Gaps = 25/403 (6%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + +L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEKELQELFGIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--ADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + + D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N + N+ I+ +G+A R ED LRILR RF A+ G K +
Sbjct: 122 IAYSPTKGIIDPFKGQNAIENQIIECVGEARLRFFEDALRILRALRFSANLGFKIV---- 177
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + ++ + + L
Sbjct: 178 ---------LSTKEAIFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVTQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + + LR + P++ + C+
Sbjct: 229 EKIENLGFLKNAPFNLELR------LLGFFKHQKSLENLRYPKKTCVLFLKAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ + +KK L
Sbjct: 283 NIHNKTELKFLLKNYDLEPFNLALEFYALKNPKHALKIKGLLKEIFNASEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +K+G IL C I L L+
Sbjct: 343 GSTLQSLGYQH-QKIGEILNACLDLVIAHPKNN---ALEWLIE 381
>gi|317009345|gb|ADU79925.1| poly(A) polymerase [Helicobacter pylori India7]
Length = 402
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 81/403 (20%), Positives = 140/403 (34%), Gaps = 22/403 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + +L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEKELQELFDIYEKSSHELYLVGGCVRDRLMGITPKDYDLTSNALVNESKELLLKHDF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + F+ D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKKLVFSAHLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N + N+ I+ +G A R ED LRILR RF A G K S
Sbjct: 122 IAYSPTKGLIDPFKGQNAIENQIIECVGGARLRFFEDALRILRALRFSATLGFKIAPSTK 181
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + + G E+ + QEI +
Sbjct: 182 EAVFAYKDLLKHLSKERLQSE--------------LNKLLMGKNAYEVAKEYQEILELVI 227
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
IE + +L + + P++ C+
Sbjct: 228 QGKIENLGFLKNAPFNL-----ELRLLGFFKHQKSLENLRYPKKTCILFAKAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ + +KK L
Sbjct: 283 NIYNKTELKFLLKNYDLEPFNLALDFYALKNPKHALKIKSLLKEIFNANEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +++G IL C I + E L ++
Sbjct: 343 GSALQSLGYKH-QQIGKILNACLDLVIAYPKNNALEGLIKWVK 384
>gi|115929256|ref|XP_001187735.1| PREDICTED: similar to Chain A, Crystal Structure Of Human
Cca-Adding Enzyme [Strongylocentrotus purpuratus]
Length = 407
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 95/322 (29%), Positives = 156/322 (48%), Gaps = 9/322 (2%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L + L + + + I GGAVRD L QD+D AT PD++ +F+K +
Sbjct: 77 LFTPELKQLAELFERYQYELRIAGGAVRDLLTKKQPQDVDFATIATPDQMKEMFTKEGIR 136
Query: 70 VIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI K+ F+ITTLR D +TDGR+A+V FT DW+ D+ RRD TIN++
Sbjct: 137 MINAKGEKHGTITARINDKENFEITTLRIDRVTDGRHAEVEFTTDWRTDAERRDLTINSM 196
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSD 185
+ G + D+ G L I F+G+A RI EDYLRILR+FRF+ +
Sbjct: 197 FLGLDGTLYDFFNGKEALERCHIAFVGNAATRIQEDYLRILRYFRFYGRIARESNKHTPE 256
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L + + GL +S ERIW E+ K+L + I MY+ + + I + E L +
Sbjct: 257 TLQSIRENGHGLAGISGERIWMEVRKILTGNFAADLIHCMYDLDLARHIGIP-PEADLQE 315
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
L +V + Q ++L + +D+ +L+M ++ + E R + ++
Sbjct: 316 LHKVYQRSQSLHPHPVTILSALF----KDENDVLTMEQRMRISAEERKTALYVIAERGDK 371
Query: 306 KTLSIPEIKKLFYLYGDKVMIA 327
+ + + + +
Sbjct: 372 PHKNPLKPYQDIVVCSHQARDE 393
>gi|224369329|ref|YP_002603493.1| polyA polymerase family protein (tRNA nucleotidyltransferase) (tRNA
CCA-pyrophosphorylase) [Desulfobacterium autotrophicum
HRM2]
gi|223692046|gb|ACN15329.1| polyA polymerase family protein (tRNA nucleotidyltransferase) (tRNA
CCA-pyrophosphorylase) [Desulfobacterium autotrophicum
HRM2]
Length = 890
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 67/417 (16%), Positives = 139/417 (33%), Gaps = 22/417 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L I + +K +VGG VRD L+ V D+DI + F+ +
Sbjct: 478 LRKIGAAGDKLGINLFVVGGFVRDLLLYRKVDDMDIVVEGDGISFAKSFALMCKGRCNSH 537
Query: 75 ISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+GT ++ D+ + R + V K D RRDFTIN +
Sbjct: 538 KKFGTAVVVLPDGFKVDVASARREYYKFPAALPTVEMSSIKLDMFRRDFTINTMAIQLNQ 597
Query: 134 KVIDYVGGLNDLRNRTIKFI--GDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ + + + +ED R+ R +F + +
Sbjct: 598 EKFGTLIDFFGAQRDLKDKTIRTIHNLSFVEDPTRVFRAIKFANRFDFTIGKLTSNLIQN 657
Query: 192 K-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-----LDQ 245
K LS R++SE+ ++LE +P+ AI + G+ + I + + L++
Sbjct: 658 AVRVDFFKNLSGLRVFSELRQILEEDDPIPAIKTLETYGLERVIHPYLAFDNQTVVLLEE 717
Query: 246 LSQVIEAEQVFEWKIDSL---LRFIVLISWQDKKSILSMAKKFSLP---REIRYFLISFF 299
+ + + + L + F+V+I K + +A + + I
Sbjct: 718 VKKALAWHDLLFLDTPYLRWSIYFMVMIRLCSPKIVQEIADRLKFSPTHQRIILNDRIKA 777
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ P+ + + +A + T + L DI
Sbjct: 778 EQRLEILEANPPKSNSRLHSILKTFRTELILYMMACAKKDETRKALSLFYTKLRDIKVL- 836
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ G+ ++ G+ PG + I+ + ++ + ++ + I ++
Sbjct: 837 -----IRGEHLITLGVRPGPEFKRIMSSVLKARLDHQVATLENEID-FAKGYIRQNK 887
>gi|239617963|ref|YP_002941285.1| CBS domain containing protein [Kosmotoga olearia TBF 19.5.1]
gi|239506794|gb|ACR80281.1| CBS domain containing protein [Kosmotoga olearia TBF 19.5.1]
Length = 866
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 83/419 (19%), Positives = 155/419 (36%), Gaps = 34/419 (8%)
Query: 15 LINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +L L D+ +VGG VRD L+N+ DID+ RIFS T +
Sbjct: 455 IQTLLRFLGVVGDELLMPTYLVGGMVRDLLLNIPNYDIDVVVEGD----ARIFSHTVKRY 510
Query: 71 IPT----SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
S+ T I D+ T R++ + V T K D RRDF+IN
Sbjct: 511 FDVKIVEHKSFKTSSIFFSDGVRIDVATARTEFYEEPAVLPNVETSTIKKDLYRRDFSIN 570
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNID 183
A+ + + R K I + +ED RILR RF +G K +
Sbjct: 571 AMAIKLNHEEYGLLLDFFGCRKDLAKGIIRILHNLSFIEDPTRILRAIRFEQRFGFKIEE 630
Query: 184 SDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL------ 236
+ G + ++ +R+ E+ K+L P NA+ M I K +F
Sbjct: 631 RTLQLLKKAVNDGYLERVTGQRLRDELEKILAEPEPQNAVKRMTKLDILKHLFPGVRHSK 690
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
++Q+ ++ E++ + ++++ ++S + ++ P+ + L
Sbjct: 691 ELQKHFDRLFTRWETIEKLTNESRKITVMVMLVLENTPEESTDWIISRYGFPKRLPEVLK 750
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ + + Y ++ A + + + +L+ L +
Sbjct: 751 TSLRILKKLQEMEDWR-FSNLYRLMERPSAEIFHFIDA----HFDEKKSNILLKYLKALE 805
Query: 357 HWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
K + G ++ KYG+ G ++ IL + S+E+ +RKL+
Sbjct: 806 SNKPK---VNGGILIQKYGLKEGPEIKMILKELYCARLEG-LPESEEE--AFVRKLLKE 858
>gi|169830674|ref|YP_001716656.1| metal dependent phosphohydrolase [Candidatus Desulforudis
audaxviator MP104C]
gi|169637518|gb|ACA59024.1| metal dependent phosphohydrolase [Candidatus Desulforudis
audaxviator MP104C]
Length = 490
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 82/444 (18%), Positives = 160/444 (36%), Gaps = 67/444 (15%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ +L ++ ++ +VGGAVRD L+ ++ D+ T P V+ + ++ R K
Sbjct: 1 MFSPGVRKVLDIITAAGREAYVVGGAVRDLLLGREPKEFDVCTDACPREVLTLAAENRIK 60
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINAL 127
++G I I + +I T R++ + + F + D RRDFT+NA+
Sbjct: 61 AFKKGAAFGVISWILDDEEIEIATFRTEFYGNDAHRPEKVEFVWALEDDLARRDFTVNAI 120
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
G ++D G DL ++ +GD R ED LR+ R RF A YG + +
Sbjct: 121 AMRADGSIVDPFEGRPDLEAGVLRAVGDPEERFGEDALRMFRACRFVAEYGF-TLAPETK 179
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF------------ 235
A +A + LS ER+ EI + L A++ + M G+
Sbjct: 180 AAIPRALHRVAGLSVERVRDEIYRTLMAEHAAAGLELMRETGLLSADCRGRVNGFDTAVP 239
Query: 236 --LDVQEISLDQLSQVIEAEQVFEWKI--------DSLLRFIVLISW------------- 272
++ ++ + V+E + + LR+ L+
Sbjct: 240 VLPELARLAGVAQNPEYHQFDVWEHTLRVVSNVPAEPALRWAALLHDVAKGLPEVRGTNR 299
Query: 273 -----------QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY--- 318
+ + + ++ P + + L + +
Sbjct: 300 RGLPTDYGHARKGAQITGRIMERLRFPPAFARRVTWLVRNHMRFPELEERFVLRWLKSLA 359
Query: 319 --LYGDKVMIAKLKIFLALHYNNLTHQDTCFI-----LQVLSDIIH---WKKPLFP---- 364
+ + ++ + LAL +L + Q L +++ W+ P FP
Sbjct: 360 PDFHNRQELLEAVGECLALRRADLLGGKVDSLAVLDGNQRLEEMVKDVMWRVPFFPEDLA 419
Query: 365 LTGDDVVKYGIPPGKKVGNILVHC 388
+TG +V + G +V ++
Sbjct: 420 ITGGEVAAL-VGRGPQVKQVMEDL 442
>gi|189423945|ref|YP_001951122.1| hypothetical protein Glov_0878 [Geobacter lovleyi SZ]
gi|189420204|gb|ACD94602.1| CBS domain containing protein [Geobacter lovleyi SZ]
Length = 880
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 71/416 (17%), Positives = 147/416 (35%), Gaps = 20/416 (4%)
Query: 17 NILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L LL K D VGG VRD L+++ D+DI F + +
Sbjct: 465 QLLELLGKSGDALGVAVHAVGGFVRDLLLDVPNLDLDITVEGDGIFFAETFGEQHGCRVR 524
Query: 73 TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
++GT ++ + D+ + R + V + D RRDFTIN L
Sbjct: 525 PHQAFGTAVVVFPDGRKLDVASTRLEYYDSPGVLPTVERASLRHDLYRRDFTINTLALCL 584
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLV 188
+ ++ + + +ED R R RF G + + ++GL+
Sbjct: 585 NTNRFGLLLDFFGVQKDLQEKAVRVLHNLSFVEDPTRAFRAIRFEQRLGFQLDPHTEGLL 644
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----QEISL 243
S ++ + +R+ E+ ++L+ + P+ A+ M G+ I ++ E
Sbjct: 645 RSAVRAGLVERVGGKRLLGELIQILKEQEPVPAVKRMAQLGLLPCIHSELRFGPDSEQLF 704
Query: 244 DQLSQVIEAEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+L +V+ Q+ + F+ L+ D L ++ +P + + +
Sbjct: 705 AELERVLAWYQLLYLDTPLEPWTVWFLALMDRLDSPRYLEACRRLMMPERLMERVFGHRH 764
Query: 301 CNFNQKTLSIPE--IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + + + + L L+ + ++ L V +
Sbjct: 765 QALKRLQHLRQMLGHGQEISNSQLHAGLHGMPVELLLYGLARSGKEDLRRL-VSHYLTRL 823
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++G ++ G G + ++ ++ E+L L R+LIA
Sbjct: 824 ADAKALVSGTELQALGAARGPAIRSLKEQLLAARLDGLIASKDEEL-ALARQLIAD 878
>gi|212715128|ref|ZP_03323256.1| hypothetical protein BIFCAT_00014 [Bifidobacterium catenulatum DSM
16992]
gi|212661809|gb|EEB22384.1| hypothetical protein BIFCAT_00014 [Bifidobacterium catenulatum DSM
16992]
Length = 480
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 87/468 (18%), Positives = 164/468 (35%), Gaps = 67/468 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + + + + +VGG VRD L++ D+D T+ P++ I +
Sbjct: 14 PEAIELGRMFAEEGYELALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFW 73
Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R++ ++TT RSD R +V + + D RRDFT+N
Sbjct: 74 DMGRKFGTLGAMRRREDGTEVQVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 133
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + + +D GG NDL ++ D +D LR++R RF A G I+
Sbjct: 134 AMALRVPELEFVDPFGGANDLVKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGF-RIEP 192
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A ++I+S+ER+ E+ K+L + P I + + G+ +F ++ + L+
Sbjct: 193 ETAEALTDMVDRIEIVSAERVRDELVKMLLSDRPRAGIEALVDSGLADIVFPEIPALQLE 252
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
+ + + VFE D LR L+ K
Sbjct: 253 -IDEHHRHKDVFEHTMIVIDRAVALETGPDGPVPAPDLTLRLAALMHDIGKPKTRRFEAG 311
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
K + + N +
Sbjct: 312 GKVSFHHHDAVGAKMTRKRLKALHFDHHMVEDVSELVNLHLRFHGYVEEPWTDSAVRRYV 371
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCF-------------ILQVLSDIIHWKKPLFPLTGDD 369
K + L + T Q+ ++ L + + L GD+
Sbjct: 372 KDAGPLYERLNRLTRADATTQNKRKAMVFSSAMDEMEQRVRDLKEKEDFDAIRPDLNGDE 431
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+++ GI PG VG H + +++ + ++ L + Q
Sbjct: 432 IMQLLGIEPGPLVGKAYKHMLEYRLDNG-PVERDVAVAELNRWYEEQQ 478
>gi|53803591|ref|YP_114728.1| polyA polymerase [Methylococcus capsulatus str. Bath]
gi|53757352|gb|AAU91643.1| polyA polymerase [Methylococcus capsulatus str. Bath]
Length = 438
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 14/241 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + +L L K ++ +VGG VRD L+ +D D+ T P+ + +F R
Sbjct: 58 LISDNALKVLYRLRKAGYQAYLVGGCVRDLLLGREPKDFDVVTDAHPEEIKAVFRNCRL- 116
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR--------SDLITDGRYAKVVFTRDWKADSLRRD 121
+ + ++ ++ T R + GR + + D+ RRD
Sbjct: 117 ---IGRRFRLAHVHFGEEIIEVATFRALTREPHDEHVTEGGRILRDNVYGTIEEDAFRRD 173
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY + VIDYVGG++D RN +++ IGD R ED +R+LR RF G
Sbjct: 174 FTVNALYYNISDFSVIDYVGGMDDHRNASLRLIGDPEQRYREDPVRMLRAIRFAVKLGFT 233
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
S + L+ + + R++ EI KL A + + + +F +F + +
Sbjct: 234 LHPSCAEPI-HRLADLLRDIPAARLYDEIVKLFLAGYAVQTFEQLRHFRLFGSLFPETEN 292
Query: 241 I 241
Sbjct: 293 C 293
>gi|15643478|ref|NP_228524.1| tRNA nucleotidyl transferase-related protein [Thermotoga maritima
MSB8]
gi|4981239|gb|AAD35797.1|AE001742_12 tRNA nucleotidyl transferase-related protein [Thermotoga maritima
MSB8]
Length = 863
Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 87/414 (21%), Positives = 154/414 (37%), Gaps = 25/414 (6%)
Query: 12 DSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D ++N+ LL K D+ +VGG VRD L+ + DIDI +
Sbjct: 451 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFL 510
Query: 68 YKVIPTSISYGTIK-IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + T + DI T R + V K D RRDFTINA
Sbjct: 511 PGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINA 570
Query: 127 LYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ K +ID+ GG DL+ I+ + ++D RILR RF + +
Sbjct: 571 MAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHT--LSFVDDPTRILRAIRFEQRFDFRIE 628
Query: 183 DSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE------IF 235
++ + ++G + + R+ E+ K+LE KNPL +I M + K
Sbjct: 629 ETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTYYT 688
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+ E + + E+ F V + + D +S + ++SL R + +
Sbjct: 689 PSMDEKMENLFRNIPWVEENFGEVDRFYAVLHVFLEFYDDESWKEVRDRYSLRRNLINEI 748
Query: 296 ISFFNCNFNQKTL-SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ S Y V + FLA ++L++ +
Sbjct: 749 RHVEKSAPALLEMLSERVPASFVYPLVKGVSNETICHFLAYLSGEKEGLFKSYLLKIKNT 808
Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ + G+ +++ GI GK +G +L + ++ + +E L +L
Sbjct: 809 KLEK------INGEYLIRKGITSGKIIGEVLEKILMKKLDGDTRDEEEILEEVL 856
>gi|256370847|ref|YP_003108671.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acidimicrobium ferrooxidans DSM 10331]
gi|256007431|gb|ACU52998.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acidimicrobium ferrooxidans DSM 10331]
Length = 462
Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 78/444 (17%), Positives = 146/444 (32%), Gaps = 49/444 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFSKTRYKVI 71
L + + ++ + +VGG VRD+L+ + D+D T P+ ++ I
Sbjct: 11 EALRPLAARFDERQRHLYLVGGVVRDALLGIEPNGDVDATTDATPEEIVEIVRPVATHFN 70
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD 130
T + +GT+ ++TT R + R V F D LRRDFT+NA+ +
Sbjct: 71 LTGLRFGTVAFHYHGVPLEVTTHRGEAYDSSTRKPTVHFVSALAEDLLRRDFTVNAMAVE 130
Query: 131 ---QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ID GG+ DL R ++ D +D LR+LR RF A + +
Sbjct: 131 VTSDDPTLIDPFGGMEDLLARRLRTPMDPRRSFSDDPLRMLRCARFIARLDLEPQRALVD 190
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
A + +S ERI E+++LL +P + + + + E ++ + L+Q
Sbjct: 191 AVHELAPRLEV-VSRERIRDELSRLLVVPDPSKGLWFLVDTPLAAEFLPELPALRLEQ-D 248
Query: 248 QVIEAEQVFEWKIDSLLRF-----------------------------IVLISWQDKKSI 278
+ + V I +
Sbjct: 249 PIHHHKDVLAHTIAVTASCSPRLRLRLAALLHDIGKPATREIGPNGVSFHFHDVVGARMA 308
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV--MIAKLKIFLALH 336
+ ++ P ++ + + T + Y ++ L
Sbjct: 309 RRILRELRYPNDLVDDVARLVELHLRFHTYAQGWSDAAVRRYVRDAGELLEDLNELTTCD 368
Query: 337 YNNLTHQDTCFILQVLSDIIHWKKP----------LFPLTGDDVVK-YGIPPGKKVGNIL 385
+ + ++ + P+ G +V++ IPPG VG +
Sbjct: 369 ATTRNERRRRMFAERMATFEERARELAERDALRARRPPIDGLEVMRILEIPPGPAVGRAM 428
Query: 386 VHCKQEWINSSFQLSQEDLHHLLR 409
I+ E LL
Sbjct: 429 RFLTDLTIDEGLNDPDEARRRLLE 452
>gi|24214670|ref|NP_712151.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira
interrogans serovar Lai str. 56601]
gi|45657793|ref|YP_001879.1| polynucleotide adenyltransferase-like protein [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
gi|24195655|gb|AAN49169.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira
interrogans serovar Lai str. 56601]
gi|45601033|gb|AAS70516.1| polynucleotide adenyltransferase-like protein [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
Length = 432
Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 105/420 (25%), Positives = 193/420 (45%), Gaps = 28/420 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
D+++I ++ K + +VGG+VRD ++ ++ D+ T++LP++++ +F + IP
Sbjct: 19 EDILHITQIIRKEGGECYLVGGSVRDLALSKIPKEFDLTTSLLPEKILSLFK----RTIP 74
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYAD 130
T I +GT+ ++ + + ++ITT R D DGR ++ F D RRDFT+NAL D
Sbjct: 75 TGIKHGTVTVLIQDRAYEITTFRKDADYLDGRRPEIVEFGVSLSEDLKRRDFTMNALAFD 134
Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ K +ID GL D++N+ I+ IG+ R ED LR +R RF + G ++ + A
Sbjct: 135 LETKALIDEHSGLLDIQNKIIRTIGNPIERFTEDGLRPIRAIRFVSSLGFH-LEPNTAKA 193
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQ 248
I K +S ER+ E+NK+L++KNP ++ GI + L + + + +
Sbjct: 194 IILCKNVTAKVSRERVHDELNKILKSKNPTPSLKLFKEFGILELFTKLKLYPVKNEIVEN 253
Query: 249 VIEAEQVFEWKIDS-LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF------FNC 301
I+ F + L+ + ++Q++ S K + I F
Sbjct: 254 KIQEVPAFPLSLRLSFLQAWLFGNFQNRNSAKQFMKDLRYSNQNTKESIFFSDTISVLLN 313
Query: 302 NFNQKTLSIPEIKKLF---------YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
+ N TL+ EI+K+ V+ L + + + IL +L
Sbjct: 314 HKNDSTLTDSEIRKILLHPVCVYSGRENLKIVIEHILNLAYIYEPTLKSVFNFHKILDLL 373
Query: 353 SDIIHWKKPLFPLTGDDVVKY--GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
L G+D+++ +PP K++G++L + + ++ L LL K
Sbjct: 374 LQPQALLVTELALRGEDILEVCPNLPP-KEIGSVLGKLLSFVLENPEANRKDSLIPLLPK 432
>gi|291455678|ref|ZP_06595068.1| tRNA adenylyltransferase [Bifidobacterium breve DSM 20213]
gi|291382606|gb|EFE90124.1| tRNA adenylyltransferase [Bifidobacterium breve DSM 20213]
Length = 472
Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 80/468 (17%), Positives = 162/468 (34%), Gaps = 67/468 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + L + + +VGG VRD L++ D+D ++ P++ I +
Sbjct: 7 PEAIELGRLFAEQGYELALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFW 66
Query: 72 PTSISYGTIKIICR-----KKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R + ++TT RSD R +V + + D RRDFT+N
Sbjct: 67 DMGRKFGTLGAMRRRADGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 126
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG +DL ++ D +D LR++R RF A G +I
Sbjct: 127 AMALRVPDLEFVDPFGGASDLAKGVLRTPVDPSQSFDDDPLRMMRAVRFVAQLGF-SIAP 185
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
D A + ++I+S+ER+ E+ K+L + P + + G+ +F ++ + L
Sbjct: 186 DAAEAISSMRDRIEIVSAERVRDELTKMLLSDRPRAGLEALVESGLADIVFPEIPALQL- 244
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
Q+ + + VFE D LR ++ K
Sbjct: 245 QIDEHHRHKDVFEHTMIVLERAITLETGPDGPVPAPDLTLRLAAVMHDIGKPKTRRFEPG 304
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYL 319
K + + N + Y+
Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNLHLRFHGYVDEPWTDSAVRRYV 364
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
+ +L + Q + ++ + + G++
Sbjct: 365 KDAGHLYERLNRLTRADATTQNKRKAMVFSQAMDEMEARVRELKKKEDFDAIRPDVDGNE 424
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+++ G+ PG +G H + +++ + + L++ A +
Sbjct: 425 IMELLGLEPGPMIGRAYKHMLEYRLDNG-PVDHDVAVAELKRWYAEIE 471
>gi|313207278|ref|YP_004046455.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Riemerella anatipestifer DSM 15868]
gi|312446594|gb|ADQ82949.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Riemerella anatipestifer DSM 15868]
Length = 476
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 73/453 (16%), Positives = 156/453 (34%), Gaps = 60/453 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYK-- 69
I + + + IVGG VRD LM DID T + + ++
Sbjct: 14 KLFKTISKVAEERGQTAYIVGGYVRDLLMKRQVPTDIDFVTEQSGIELAQAVARELDSNL 73
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ +YGT I + + R + ++ V + D RRDFTINA+
Sbjct: 74 KVSVFKTYGTAMIKWKGLELEFVGARKESYSEDSRKPAVEQGSLEDDQKRRDFTINAMAI 133
Query: 130 ----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ G+++D GG+ DL ++ +K + +D LR++R RF + ++ +
Sbjct: 134 SLGKEDFGRLVDPFGGVQDLESKILKTPLEPLQTYSDDPLRMMRAIRFASTLNF-KVEQN 192
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---- 241
L A + +KI+S ERI E NK++ ++ P + + + G+ ++I ++ +
Sbjct: 193 SLDAIKQEADRIKIVSMERIMVEFNKIMLSEKPSIGLKLLDDTGLLEKIIPELTALKGIE 252
Query: 242 -------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS---------MAKKF 285
+ + + + + LR+ L+ K +F
Sbjct: 253 EIEGQTHKDNFYHTLEVVDNISKHTDKLWLRWSALLHDIGKAPTKKFVDGIGWTFHGHEF 312
Query: 286 SLPREIRYFLISF-------------------FNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ + S +++L + G+ +
Sbjct: 313 LGSKMAKPLFQRLKLPLGADLKYVQKMVKLSSRPIALVTDDTSDAALRRLLFDAGED--L 370
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----------LFPLTGDDVVKYG-I 375
L + + + K P++G++++ +
Sbjct: 371 EDLFTLCKADITTKNTKKQERFRKNFEYVAQKIKEVEEKDQIRNFQPPISGEEIMALFQL 430
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
PG+++G + K+ + + E+ +
Sbjct: 431 KPGREIGILKEKVKEAILEGEISNTPEEAKDFV 463
>gi|225551849|ref|ZP_03772792.1| polynucleotide adenylyltransferase [Borrelia sp. SV1]
gi|225371644|gb|EEH01071.1| polynucleotide adenylyltransferase [Borrelia sp. SV1]
Length = 410
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 93/395 (23%), Positives = 156/395 (39%), Gaps = 18/395 (4%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II
Sbjct: 20 NNYEFYLVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75
Query: 85 RKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141
KK F+ITT R + + A +T++ D RRDFTINA+ D +ID G
Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLIQDLERRDFTINAIAMDIFNFNIIDCYNG 135
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
DL + I+ IG+ + R ED LRILR RF + + + K + L I
Sbjct: 136 KKDLNKKIIRCIGNPNKRFEEDALRILRAARFSSTLNFNIEKNTLISMKYKKENILMISK 195
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+KLLE N I ++ FK +L+ ++VI+ + +
Sbjct: 196 ERIKNE-FHKLLEGINIQKGIYYLKKVDFFKNF------FNLEIKTKVIKKIALLDKNKF 248
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L +L + K + + ++ + + N ++ ++ + YL
Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRSIIDNNNIFNVKKLSDIRYLLS 308
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPP 377
+I ++ FI++ + K P + G D+
Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K +G IL + I + ++ L ++ L
Sbjct: 369 NKNIGKILNMLLRCVIENPKLNTKNYLIKKIKTLK 403
>gi|317014060|gb|ADU81496.1| polynucleotide adenylyltransferase [Helicobacter pylori
Gambia94/24]
Length = 404
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 78/403 (19%), Positives = 139/403 (34%), Gaps = 25/403 (6%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEEGLKELFDIYEKSPYELYLVGGCVRDYLMGITPKDYDLTSNALVNESKELLLKRHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + F+ D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNHQSYEITTFRMEKGHIKHRKPKELVFSARLMDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G + + N+TI+ +G+A R ED LRILR RF A G K
Sbjct: 122 IAYSPTKGLIDPFKGRSAIENQTIECVGEARLRFFEDALRILRALRFSATLGFK------ 175
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + +K + + L
Sbjct: 176 -------IAASTKRAVFACKDLLKHLSKERLQSELNKLLMGKNAYKVAKEYQEILELVIQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + ++ LR + P++ C+
Sbjct: 229 EKIENLGFLKNAPLNLELR------LLGFFKHQKSLENLRYPKKTCVLFSKAKECHKAFF 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ +KK L
Sbjct: 283 NIHSKTGLKFLLKNYDLEPFNLALDFYALENPKHALKIKGLLKEIFDSNEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +K+G IL C I + L L+
Sbjct: 343 GGALQSLGYQH-QKIGEILNACLNSVIENPKNN---ALEWLIE 381
>gi|170783388|ref|YP_001711722.1| putative RNA nucleotidyltransferase [Clavibacter michiganensis
subsp. sepedonicus]
gi|169157958|emb|CAQ03168.1| putative RNA nucleotidyltransferase [Clavibacter michiganensis
subsp. sepedonicus]
Length = 455
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 81/452 (17%), Positives = 163/452 (36%), Gaps = 61/452 (13%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+ ++ + +VGG VRD+ + + D+D+ T PDR++ I ++
Sbjct: 2 LARAFHEAGHELALVGGPVRDAFLGRAATDLDLTTDARPDRILEIVKPVADAHWDIGRAF 61
Query: 78 GTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135
GTI + + +ITT R+D R +V F + D +RRDFT+NAL Q +
Sbjct: 62 GTIGARVKGEQVEITTYRTDQYDGVSRKPEVEFGSSLEEDLVRRDFTVNALAVRLPQVVL 121
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
+D GG++DL + ++ +D LR++R RF + G +D L A
Sbjct: 122 VDPSGGIDDLLAQVLRTPVAPEVSFGDDPLRMMRAVRFASQLGF-RLDDAALAAIHDMAP 180
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ---------- 245
+ +S ER+ E++KLL P + + GG+ + ++ + L+
Sbjct: 181 RILDISVERVSDELSKLLRTPEPRAGLDLLVEGGLADHVLPELPAMKLEADEHHRHKDVY 240
Query: 246 LSQVIEAEQVFEWK--------IDSLLRFIVLISWQDKK--------------------- 276
+ +Q + + D +LR L+ K
Sbjct: 241 QHSLQVLDQAIDHERSRHPGDAPDLVLRLAALLHDIGKPSTRRLEPGGVVTFHHHDVVGS 300
Query: 277 -SILSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKLK 330
+ + + + + + +++ G ++ +
Sbjct: 301 KMAKRRLRALRFDNDTIASVARLIELHLRFFGYTEGGWTDSAVRRYVRDAGPELERLHML 360
Query: 331 IFLALHYNNLTHQDT--------CFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKV 381
+ N D + L++ L G+ +++ +PPG V
Sbjct: 361 TRADVTTQNRRKADRLGFAYDDLEARIAELAEQEEMAAVRPDLDGEAIMRILDVPPGPVV 420
Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
G + ++ L +++ R+L+A
Sbjct: 421 GRAYRFLLELRLDEG-PLPEDEAE---RRLVA 448
>gi|15614247|ref|NP_242550.1| tRNA CCA-pyrophosphorylase [Bacillus halodurans C-125]
gi|73619745|sp|Q9KC89|CCA_BACHD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|10174301|dbj|BAB05403.1| poly(A) polymerase [Bacillus halodurans C-125]
Length = 375
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 72/396 (18%), Positives = 154/396 (38%), Gaps = 35/396 (8%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
++I+S L ++ IVGGAVRD + +D+D+ T+ P+ + ++ +
Sbjct: 9 LSIVSELRDHGFEAYIVGGAVRDYHIGRKPKDVDVVTSASPEEIRTLYPHA----FQINR 64
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
+ T+ + +K +++TLR + D RDFTINA+ G +
Sbjct: 65 QFQTLTVHLQKVAIEVSTLRGG--------------SIEDDLCSRDFTINAMALAMNGDI 110
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
ID GG DL N I+ R ED LR+LR RF + G + A +
Sbjct: 111 IDPTGGKTDLENGVIRSFHP-EARFKEDPLRMLRAPRFASELGF-TVAKGTAEAIKGSCS 168
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
L ++ ER+ E+ +L+ + + ++ G+ + + +SL + + + E
Sbjct: 169 LLADVAVERVEKELTQLMIGTHRSSGWCLLHETGL----YPFIPGVSLSKETVLRMKEIS 224
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ F ++ + + + K L +E + + + + ++ S E
Sbjct: 225 RSPGLLPADGFWAILYL-----LENCSMKLPLAKEKKKRIRTIVHYVGERQNHSWNETML 279
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375
++ +++ + Q+ S + + +TG DV+ +
Sbjct: 280 YQASLSVATVVEQIRALF-----GQASVHEEELRQLWSSLPIQTRTELAVTGRDVMAHFQ 334
Query: 376 PP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G + + L ++ + + ++ + L +
Sbjct: 335 KKGGPWLADTLADIEEAVLLKHIENEKKSIIQWLEE 370
>gi|327398274|ref|YP_004339143.1| polynucleotide adenylyltransferase region [Hippea maritima DSM
10411]
gi|327180903|gb|AEA33084.1| Polynucleotide adenylyltransferase region [Hippea maritima DSM
10411]
Length = 870
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 80/410 (19%), Positives = 153/410 (37%), Gaps = 18/410 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L I L + +VGG +RD ++ DIDI + F+K + + T
Sbjct: 455 LKEIGELAKSMGYNAYLVGGIIRDIILGWENLDIDIVIEGDGIVFAKEFAKIKQAKVATH 514
Query: 75 ISYGTIK-IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ T ++ DI T R + VV K D RRDFTINAL
Sbjct: 515 ERFKTATLVMKDGMRIDIATAREEYYDLPGALPVVEKSSIKLDLYRRDFTINALAMKLHD 574
Query: 134 KV---IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +D+ GGLND++N+ I+ + ++D R+ R RF A G +
Sbjct: 575 EFGDLLDFFGGLNDIKNKKIRVLHM--LSFVDDPTRMYRAVRFAARLGFDIGQQTDRLIK 632
Query: 191 IKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ + G+ + RI++EI +L N ++ + + + LD + I D++
Sbjct: 633 VAVELGIVNKVEKIRIFNEIVHILNNDNVKSSFEMLKSYRL--IRTLDNKLIIDDRILSY 690
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR-----YFLISFFNCNFN 304
I+ + + + + +L S N +
Sbjct: 691 IDEAEEIVKSCSIFCKNKKIKRERVFLILLEYLFGKSTSFSKAVGADDQTYEFVKNTSKK 750
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
+ KK ++K+ + L LT ++ +++ L D++H +
Sbjct: 751 IPIANGILSKKNVNDLEIYEALSKIPLEGILALYPLT-KEKERLIRYLEDLMHRE---PI 806
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ G D++K G P K G ++ ++ + + E + ++ +
Sbjct: 807 IKGKDLIKLGFKPSKIFGQMINDIFKQQLLGKIKDKIEAIKYIEENYKNA 856
>gi|108805591|ref|YP_645528.1| polynucleotide adenylyltransferase region [Rubrobacter xylanophilus
DSM 9941]
gi|108766834|gb|ABG05716.1| Polynucleotide adenylyltransferase region [Rubrobacter xylanophilus
DSM 9941]
Length = 510
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 89/489 (18%), Positives = 169/489 (34%), Gaps = 88/489 (17%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
L + + +VGG VRD+L +++D AT P + R+ +
Sbjct: 13 PLARLAERFRDSGRELYLVGGYVRDALSGRRGEEVDAATDARPPEIKRLLRPHAGYMWDV 72
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQ- 131
+GTI ++TT RSD +G R+ +V F D RRDFTINA+ AD
Sbjct: 73 GERFGTIGAAVDGYRVEVTTYRSDRYAEGDRHPEVSFGESLMGDLARRDFTINAVAADAL 132
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G +ID G DL I+ +GD R+ ED LR+LR RF A +
Sbjct: 133 SGGIIDPFEGRRDLELGIIRPVGDPLERMREDPLRMLRAVRFVATLSTPEKPFEMTADLE 192
Query: 192 KAKKGLKI----LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+A + +S+ERI E +++L + NP + + G+ + + + E +
Sbjct: 193 RAIRENARWLESISAERIREEFDRILLSPNPALGLRALVRLGLMRYVVPEFMETVDVRQD 252
Query: 248 QVIEAEQVFEW--------KIDSLLRFIVLISWQDKKSILSM------------------ 281
+ + VFE + + LR K L
Sbjct: 253 TELHHKDVFEHTLIVVENVEPEPTLRRAAFFHDIGKPRTLVYEHRCTYCGARSVRREAGE 312
Query: 282 -------------------------------AKKFSLPREIRYFLISFFNCNFNQKTLSI 310
++ + ++ + + + ++
Sbjct: 313 GECEECGGRTVARKIHFYGHENVGSGIARRAMRRLAYSKDEVDAVAHLVREHMRPMSYAM 372
Query: 311 ----------PEIKKLFYLYGDKVMIAKLKIFLALHYNNLT-------------HQDTCF 347
+ +L +A + + L L ++T +
Sbjct: 373 GRDPWTDSAVRRFIRDAHLVRGDRELANVDMLLKLARADITGSAPRRRRAAEESWRSLRE 432
Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSF-QLSQEDLH 405
+ + + ++ PL G+++++ +G PG+ + +I + + E + Q +E
Sbjct: 433 RVDRVREQDAIERLKSPLDGNELMEHFGRGPGRWIKHIKDYLENEVVEGRLAQDDKETAW 492
Query: 406 HLLRKLIAS 414
L + +
Sbjct: 493 RLAEEYVRE 501
>gi|218249512|ref|YP_002375206.1| polynucleotide adenylyltransferase [Borrelia burgdorferi ZS7]
gi|226321404|ref|ZP_03796931.1| polynucleotide adenylyltransferase [Borrelia burgdorferi Bol26]
gi|218164700|gb|ACK74761.1| polynucleotide adenylyltransferase [Borrelia burgdorferi ZS7]
gi|226233200|gb|EEH31952.1| polynucleotide adenylyltransferase [Borrelia burgdorferi Bol26]
Length = 410
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 94/395 (23%), Positives = 156/395 (39%), Gaps = 18/395 (4%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II
Sbjct: 20 NNYEFYLVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75
Query: 85 RKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141
KK F+ITT R + + A +T++ D RRDFTINA+ D +ID G
Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLTKDLERRDFTINAIAMDIFNFNIIDCYNG 135
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
DL +TI+ IG+ + R ED LRILR RF + + + K + L I
Sbjct: 136 KKDLNKKTIRCIGNPNKRFEEDALRILRAARFSSTLNFNIEKNTLISMKYKKENILMISK 195
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+KLLE N I ++ FK +L+ ++VI+ + +
Sbjct: 196 ERIKNE-FHKLLEGINIQKGIYYLKKVDFFKNF------FNLEIKTKVIKKIALLDKNKF 248
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L +L + K + + ++ + N ++ ++ + YL
Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRGIIDNNNIFNVKKLSDIRYLLS 308
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPP 377
+I ++ FI++ + K P + G D+
Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K +G IL + I + ++ L ++ L
Sbjct: 369 NKNIGKILNMLLRCVIENPKLNTKNYLIKKIKTLK 403
>gi|313886460|ref|ZP_07820176.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Porphyromonas asaccharolytica PR426713P-I]
gi|332300372|ref|YP_004442293.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Porphyromonas asaccharolytica DSM 20707]
gi|312924006|gb|EFR34799.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Porphyromonas asaccharolytica PR426713P-I]
gi|332177435|gb|AEE13125.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Porphyromonas asaccharolytica DSM 20707]
Length = 488
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 86/456 (18%), Positives = 167/456 (36%), Gaps = 56/456 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY- 68
+ + + + ++ +VGG VRD + DIDI + + ++
Sbjct: 15 LRHPVFALVGRVADTLDLETYVVGGWVRDLFLQRPSDDIDIVCVGSGIALAKAVAREIGP 74
Query: 69 -KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT ++ + + R + +V + D RRDFTINA+
Sbjct: 75 KCQVHLFANFGTAQLRYKGVEVEFVGARRESYQRDSRKPIVEDGTLEDDQERRDFTINAM 134
Query: 128 YADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+ D GL DL++ I+ D +D LR++R RF + G ID
Sbjct: 135 AISLNERTYGELVDPFYGLEDLQDYMIRTPVDPQVTFDDDPLRMMRAVRFASQLGFF-ID 193
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-- 241
A +K ++ +KI+S+ERI E+NK++ + P + M G+ + I +VQ +
Sbjct: 194 DAVFDAIVKLRERIKIVSAERIIVELNKIMLSPRPSVGLSLMEQTGLLELILPEVQLLRG 253
Query: 242 --------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMA----KKFSLP 288
D L+ + K D+L LR+ L+ K F
Sbjct: 254 TETVVGVGHKDNLAHTYQVVDQLAAKSDNLYLRWAALLHDIAKPKTKRWDAQQGWTFHNH 313
Query: 289 REI-------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
I ++ + + +L + +
Sbjct: 314 NYIGAKMVPRMFRRLKLPLDSHMQYVAKLVDLHMRPSSLVDEGVTDSAIRRLLFDAGDDI 373
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL-------------FPLTGDDVVKY-GI 375
+ + L +++T ++ + QVL + ++ L P+ GD++++ G+
Sbjct: 374 EDLMTLVESDVTSKNPKRVQQVLDNYQLIRRKLQEVEEKDRIRNFAPPIDGDEIMRLFGL 433
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
PP + VG + K ++ E LL++
Sbjct: 434 PPSQIVGTLKERIKNAILDGEIPNEYEPARELLLKE 469
>gi|46446942|ref|YP_008307.1| putative Poly(A) polymerase [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400583|emb|CAF24032.1| putative Poly(A) polymerase [Candidatus Protochlamydia amoebophila
UWE25]
Length = 424
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 76/360 (21%), Positives = 139/360 (38%), Gaps = 10/360 (2%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D D + +L L + +VGG+VRD L+ +D DI+T+ P+++ IF +
Sbjct: 17 LIDRDALYVLERLRHAGFTAYLVGGSVRDLLLKRVPKDFDISTSARPEQIKAIFQRQ--- 73
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I + I K +++T R+ G + D LRRDFTIN L+
Sbjct: 74 CILIGRRFRLAHIRFGHKIIEVSTFRTGENDSGLILHDNEWGTPEEDVLRRDFTINGLFY 133
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D +IDYV G D++ ++ IG+ R +D +R+LR +F A Y I+
Sbjct: 134 DSSNHSIIDYVNGWEDVQKHLLRTIGEPEKRFKQDPVRLLRLLKFHARYNF-KIEEQTEQ 192
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-----SL 243
A + + S RI EI ++LE+ I + GI +F + ++
Sbjct: 193 AIHVCRIEITKSSPARILEEILRMLESGASAPFIKLLAEYGILNILFPSLTQLLKTTYGK 252
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
+ A+Q+++ K ++L +L + + K L ++ +
Sbjct: 253 TIFHYLTCADQLYQHKGKNVLDRAILTACLLFPVLERELDKHYLSKKQTPHIGEITLVAS 312
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
+ + + F M++ L L + + + + K
Sbjct: 313 SLVKEILIQSFSHFPRRITSTMLSILVAQYRLTPLSGKRHYREKLFRQKDFELALKFFKL 372
>gi|281411943|ref|YP_003346022.1| Polynucleotide adenylyltransferase region [Thermotoga naphthophila
RKU-10]
gi|281373046|gb|ADA66608.1| Polynucleotide adenylyltransferase region [Thermotoga naphthophila
RKU-10]
Length = 863
Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 86/414 (20%), Positives = 155/414 (37%), Gaps = 25/414 (6%)
Query: 12 DSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D ++N+ LL K D+ +VGG VRD L+ + D+DI +
Sbjct: 451 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDVDIVVEGNALEFAEYAKRFL 510
Query: 68 YKVIPTSISYGTIK-IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + T + DI T R + V K D RRDFTINA
Sbjct: 511 PGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINA 570
Query: 127 LYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ K +ID+ GG DL+ I+ + ++D RILR RF + +
Sbjct: 571 MAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHT--LSFVDDPTRILRAIRFEQRFDFRIE 628
Query: 183 DSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ + ++G + + R+ E+ K+LE KNPL +I M + K +F
Sbjct: 629 ETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTYYT 688
Query: 242 ------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+ + E+ F V + + D +S + ++SL R++ +
Sbjct: 689 PSMDGKMENLFRNIPWVEENFGEVDKFYAVLHVFLEFYDDESWKEVRDRYSLRRDLINEI 748
Query: 296 ISFFNCNFNQKTL-SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ S Y V + FLA ++L++ +
Sbjct: 749 RHVEKSAPALLEMLSERVPASFVYPLVKGVSNETICHFLAYLSGEKEELFKSYLLKIKNT 808
Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ + G+ +++ GI GK +G +L + ++ + +E L +L
Sbjct: 809 KLEK------INGEYLIRKGITSGKIIGEVLEKILMKKLDGDTRDEEEILEEVL 856
>gi|317482345|ref|ZP_07941365.1| tRNA adenylyltransferase [Bifidobacterium sp. 12_1_47BFAA]
gi|316916225|gb|EFV37627.1| tRNA adenylyltransferase [Bifidobacterium sp. 12_1_47BFAA]
Length = 471
Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 83/468 (17%), Positives = 160/468 (34%), Gaps = 67/468 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + L + + +VGG VRD L++ D+D ++ P++ I +
Sbjct: 7 PEAIELGRLFAEQGYELALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFW 66
Query: 72 PTSISYGTIKIICR-----KKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R + ++TT RSD+ R +V + + D RRDFT+N
Sbjct: 67 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDMYDPDSRKPEVNYGDTLEGDLSRRDFTVN 126
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG +DL ++ D +D LR++R RF A G I
Sbjct: 127 AMALRVPDLQFVDPFGGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGF-RIAP 185
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
D A + + I+S+ER+ E+ KLL + P + + G+ +F ++ + L
Sbjct: 186 DAAEAITSMRDRIDIVSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL- 244
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
Q+ + + VFE D LR ++ K
Sbjct: 245 QIDEHHRHKDVFEHTMIVLERAIALETGPDGPVPAPDLTLRLAAVMHDIGKPKTRRFEPG 304
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYL 319
K + + N + Y+
Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNMHLRFHGYVDEPWTDSAVRRYV 364
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
+ +L + Q + ++ + L G++
Sbjct: 365 KDAGHLYERLNRLTRADATTQNKRKAMIFSQAMDEMEERVRELKKKEDFDAIRPDLDGNE 424
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+++ G+ PG +G H + +++ + L++ A Q
Sbjct: 425 IMELLGLEPGPMIGRAYKHMLEYRLDNGPVDHDVAVEE-LKRWYAEIQ 471
>gi|195941525|ref|ZP_03086907.1| polynucleotide adenylyltransferase (papS) [Borrelia burgdorferi
80a]
Length = 410
Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 93/395 (23%), Positives = 155/395 (39%), Gaps = 18/395 (4%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II
Sbjct: 20 NNYEFYLVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75
Query: 85 RKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141
KK F+ITT R + + A +T++ D RRDFTINA+ D +ID G
Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLTKDLERRDFTINAIAMDIFNFNIIDCYNG 135
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
DL + I+ IG+ + R ED LRILR RF + + + K + L I
Sbjct: 136 KKDLNKKIIRCIGNPNKRFEEDALRILRAARFSSTLNFNIEKNTLISMKYKKENILMISK 195
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+KLLE N I ++ FK +L+ ++VI+ + +
Sbjct: 196 ERIKNE-FHKLLEGINIQKGIYYLKKVDFFKNF------FNLEIKTKVIKKIALLDKNKF 248
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L +L + K + + ++ + N ++ ++ + YL
Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRGIIDNNNIFNVKKLSDIRYLLS 308
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPP 377
+I ++ FI++ + K P + G D+
Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K +G IL + I + ++ L ++ L
Sbjct: 369 NKNIGKILNMLLRCVIENPKLNTKNYLIKKIKTLK 403
>gi|295394862|ref|ZP_06805075.1| tRNA adenylyltransferase [Brevibacterium mcbrellneri ATCC 49030]
gi|294972195|gb|EFG48057.1| tRNA adenylyltransferase [Brevibacterium mcbrellneri ATCC 49030]
Length = 515
Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 91/483 (18%), Positives = 158/483 (32%), Gaps = 87/483 (18%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + + + ++ + +VGG+VRD+L+ + D+D T PD + +I +
Sbjct: 18 DPIVGELGNRFDEAGFELALVGGSVRDALLGREIPDLDFTTDARPDDIEKIIAPWADTYW 77
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI ++ R +ITT R+D R V F + D +RRDFTI A+
Sbjct: 78 DIGRKFGTIGMMKRGYQVEITTYRADSYDPQSRKPTVAFGDNLDDDLVRRDFTIGAMAVR 137
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+D GL L +RTI G A +D LR++R RF + G ++ + A
Sbjct: 138 LPSRAFVDPYNGLGALESRTITTPGSATTSFTDDPLRMMRAARFVSQLGF-SLAPEVRAA 196
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------- 238
+ I+S+ER+ E+ KL+ P I + + G+ I +V
Sbjct: 197 MSDMADRIAIVSAERVRDELTKLIVGAQPWEGIDALVDTGLADHILPEVSGLRLERDEHH 256
Query: 239 -----QEISLDQLSQVIEAEQVFEW--------------------------------KID 261
+ SL L Q ++ E + D
Sbjct: 257 RHKDVYQHSLTVLRQAVQLEAEYAKRALSNAEGEAGDSVAEQAQDTAKRATVDPEFTAPD 316
Query: 262 SLLRFIVLISWQDKKSILSMAK----------------------KFSLPREIRYFLISFF 299
++RF L+ K + A K + +E +
Sbjct: 317 FIVRFAALMHDVGKPATRKFAPGGAVTFYHHDVVGAKLTRSRMKKLNFDKETTTKVARLV 376
Query: 300 NCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-------- 348
+ Y+ ++ +L I + +
Sbjct: 377 ELHLRFYGYGDAGWTDSAVRRYVTDAGDLLTRLHILTRSDVTTRNRRKAERLAFAYDDLE 436
Query: 349 --LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
++ L+ L G +++ I PG VG H + E
Sbjct: 437 SRIEALAQKEAIGAIRPDLNGQQIMEILEISPGPVVGRAYKHMLDIRMERGPLSYDEARL 496
Query: 406 HLL 408
LL
Sbjct: 497 QLL 499
>gi|108759921|ref|YP_631692.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Myxococcus xanthus DK 1622]
gi|108463801|gb|ABF88986.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Myxococcus xanthus DK 1622]
Length = 422
Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 92/413 (22%), Positives = 169/413 (40%), Gaps = 18/413 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++++++ L +VGG VRD + + +D D+AT+ LP V F KVIPT
Sbjct: 13 PVLDVIARLRDLGHAVYLVGGCVRDMVRLVHPKDFDVATSALPQEVQGAFR----KVIPT 68
Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFT-RDWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++TT RS+ DGR V RD D RRDFTINA+ +
Sbjct: 69 GIQHGTVTVLQNGTHVEVTTFRSEGDYLDGRRPSSVAFERDIVKDLSRRDFTINAMAYNP 128
Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+++D GG +DLR++ I+ +G A R ED LR LR RF A G +DS A
Sbjct: 129 LDRELVDPFGGQSDLRSQLIRCVGSAQERFSEDGLRPLRAVRFAAVLGF-ALDSATRAAI 187
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ ++ ER+ E+ KLL + + ++ + + G+ ++ + V
Sbjct: 188 PATLGVFRKVALERVREELVKLLLSPRAESGLLLLADTGLLDVFLPELARAEASAAASVR 247
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
A Q +++ + ++ D+ + + P ++ + + +
Sbjct: 248 AAVQASPLEVEVRVAVLLA-DLVDRAQARDIGLRLKFPNKVADLVALLVEHAKAETRVGE 306
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT-CFILQVLSDIIHWKKPLFPLTGDD 369
P+ L L + + D + +++ + PLT D
Sbjct: 307 PDAALRRLLARLGPPQLPLWAAVVRARVGVRQPDALPAVEALIARVEALAAAKPPLTAKD 366
Query: 370 V-------V-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ + G+ P VG + ++ + + L L+ A
Sbjct: 367 LSLTGGDIMAALGVGPSPIVGEATRFLVESVLDDPSLNTADALRQRLQAWQAQ 419
>gi|225352359|ref|ZP_03743382.1| hypothetical protein BIFPSEUDO_03976 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225156866|gb|EEG70235.1| hypothetical protein BIFPSEUDO_03976 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 487
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 87/468 (18%), Positives = 163/468 (34%), Gaps = 67/468 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + + + +VGG VRD L++ D+D T+ P++ I +
Sbjct: 21 PEAIELGRMFAAEGYELALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFW 80
Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R++ ++TT RSD R +V + + D RRDFT+N
Sbjct: 81 DMGRKFGTLGAMRRREDGTEVQVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 140
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + + +D GG NDL ++ D +D LR++R RF A G I+
Sbjct: 141 AMALRVPELEFVDPFGGANDLAKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGF-RIEP 199
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A ++I+S+ER+ E+ K+L + P I + + G+ +F ++ + L+
Sbjct: 200 ETAEALTDMVDRIEIVSAERVRDELVKMLLSDRPRAGIEALVDSGLADIVFPEIPALQLE 259
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
+ + + VFE D LR L+ K
Sbjct: 260 -IDEHHRHKDVFEHTMIVIDRAVALETGPDGPVPAPDLTLRLAALMHDIGKPKTRRFESG 318
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
K + + N +
Sbjct: 319 GKVSFHHHDAVGAKMTRKRLKALHFDHHMVEDVSELVNLHLRFHGYVEEPWTDSAVRRYV 378
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCF-------------ILQVLSDIIHWKKPLFPLTGDD 369
K + L + T Q+ ++ L + + L GD+
Sbjct: 379 KDAGPLYERLNRLTRADATTQNKRKAMVFSSAMDEMEQRVRDLKEKEDFDAIRPDLNGDE 438
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+++ GI PG VG H + +++ + ++ L + Q
Sbjct: 439 IMQLLGIDPGPLVGKAYKHMLEYRLDNG-PVERDVAVAELNRWYEEQQ 485
>gi|34763233|ref|ZP_00144196.1| POLY(A) POLYMERASE; TRNA NUCLEOTIDYLTRANSFERASE [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
gi|27887113|gb|EAA24221.1| POLY(A) POLYMERASE; TRNA NUCLEOTIDYLTRANSFERASE [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
Length = 451
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 99/439 (22%), Positives = 178/439 (40%), Gaps = 49/439 (11%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I IL+ LNK K IVGGA+RD L+ L +D+D T + + +FS+ K T
Sbjct: 14 IKILNKLNKYG-KGYIVGGAIRDILLGLKPKDVDFTTNLPYGTLKTLFSEYTPK--ETGK 70
Query: 76 SYGTIKIICRKKYFDITTLRSDLIT-------DGRYAKVVFTRDWKADSLRRDFTINALY 128
S+G ++I ++I R D KV F D + D RRDFTINA+
Sbjct: 71 SFGVLRIRINNIDYEIAKFRKDNYEEKDGLKIIPEEKKVSFVDDIRNDLARRDFTINAMA 130
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+Q+ +ID G D+ NR I F+G + RI+ED LR+LR FRF + ++ + +
Sbjct: 131 YNQKEGIIDLYNGQKDIENRIINFVGKSEERIIEDPLRVLRAFRFMSRLNF-SLSENTIE 189
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K K+ LK +S ERI E +KLL KN N + M + G+ + I + +
Sbjct: 190 AIKKQKELLKNISEERITMEFSKLLLGKNIKNTLTLMKDTGVLELIIPEFKATYDFNQCN 249
Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQ----------------------DKKSI 278
+F D LR+ L+
Sbjct: 250 PHHNLDLFNHIINVVSKVPADLELRYSALLHDIAKPIVQTFDEEGIAHYKTHEIVGADMA 309
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ + +P + ++ + + ++ + KL G + ++ A +
Sbjct: 310 RDILTRMKVPVKFIDTVVEIIKKHMILYRDVTDKKFNKLLSEMGYNNLWRLIEHCNADNE 369
Query: 338 NNLTHQDT------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
+ + + + + + + G D+++ G ++G I +
Sbjct: 370 SKNNEVVSTENDLHERLKRAVEKQMQVTVNDLAVNGKDLIELDFT-GTEIGKIKKELLDK 428
Query: 392 WINSSFQLSQEDLHHLLRK 410
+++ Q +E++ + +++
Sbjct: 429 YLSEEIQNEKEEMLNYVKE 447
>gi|150390292|ref|YP_001320341.1| polynucleotide adenylyltransferase region [Alkaliphilus
metalliredigens QYMF]
gi|149950154|gb|ABR48682.1| Polynucleotide adenylyltransferase region [Alkaliphilus
metalliredigens QYMF]
Length = 875
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 76/404 (18%), Positives = 138/404 (34%), Gaps = 18/404 (4%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI-IC 84
+ IVGG VRD L+ QD+D + ++ + +GT I +
Sbjct: 472 GNDVFIVGGFVRDFLLGEENQDLDFVVEGDGIAFAQALNEIIQGRLTIHEKFGTATIQLP 531
Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
K+ D+ T R + V +D RRDFTINA+ +
Sbjct: 532 DKRTLDVVTARREYYEYPAAMPQVEKSSIWSDLFRRDFTINAMAIQLNKSKFGQLIDYFG 591
Query: 145 LRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILS 201
+ +ED RI R RF D K G+ LS
Sbjct: 592 GIQDLEDKNIRVLYNLSFVEDPTRIFRAIRFSTRLNFNIEDETKTFIHEAIKDGMLDRLS 651
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-----SLDQLSQVIEAEQVF 256
+ER+ EI + KN I+ + + + I +Q L L + I + +
Sbjct: 652 AERLREEILNTILEKNIQENILSLDRFKVLEIIHPKLQASQANVEKLQTLKETINYFRTY 711
Query: 257 EWKID----SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E + D L+ + L+S ++ ++ K + + E
Sbjct: 712 ESRPDEIEVVLIVLMHLLSDLNEHDLVESLNKLIANKGNYSKIKETLENRKIIYEQLKQE 771
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
+ LY + I + + ++ + VL + ++G+D++K
Sbjct: 772 DLNSYDLYQLLNQFSLESIIYYYNDCDHSYVKHYLLFYVLKLKEIHVE----ISGEDLIK 827
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
GI PG +L +E + + +E++ ++L S +
Sbjct: 828 LGIKPGPIFRIVLERVLEEKVKGNIYRREEEI-QFAQQLYRSLK 870
>gi|307637329|gb|ADN79779.1| tRNA nucleotidyltransferase [Helicobacter pylori 908]
gi|325995920|gb|ADZ51325.1| tRNA nucleotidyltransferase [Helicobacter pylori 2018]
gi|325997514|gb|ADZ49722.1| Polynucleotide adenylyltransferase [Helicobacter pylori 2017]
Length = 402
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 76/403 (18%), Positives = 137/403 (33%), Gaps = 25/403 (6%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEEGLKELFDIYEKSPHELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--ADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + + D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNHQSYEITTFRMEKGHIKHRKPKELVFSARLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G + + N+TI+ +G A R ED LRILR RF A G K
Sbjct: 122 IAYSPTKGLIDPFKGRSAIENQTIECVGGARLRFFEDALRILRALRFSATLGFK------ 175
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + ++ + + L
Sbjct: 176 -------IAASTKRAVFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVIQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + ++ LR + P++ C+
Sbjct: 229 EKIENLGFLKNAPLNLELR------LLGFFKHQKSLENLRYPKKTCVLFSKAKECHKAFF 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ +KK L
Sbjct: 283 NIHSKTGLKFLLKNYDLEPFNLALDFYALENPKHALKIKGLLKEIFDSNEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +K+G IL C I + L L+
Sbjct: 343 GGALQSLGYQH-QKIGEILNACLNSVIENPKNN---ALEWLIE 381
>gi|226320457|ref|ZP_03796023.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 29805]
gi|226234099|gb|EEH32814.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 29805]
Length = 410
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 93/395 (23%), Positives = 155/395 (39%), Gaps = 18/395 (4%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II
Sbjct: 20 NNYEFYLVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75
Query: 85 RKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141
KK F+ITT R + + A +T++ D RRDFTINA+ D +ID G
Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDCYNG 135
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
DL + I+ IG+ + R ED LRILR RF + + + K + L I
Sbjct: 136 KKDLNKKIIRCIGNPNKRFEEDALRILRAARFSSTLNFNIEKNTLISMKYKKENILMISK 195
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+KLLE N I ++ FK +L+ ++VI+ + +
Sbjct: 196 ERIKNE-FHKLLEGINIQKGIYYLKKVDFFKNF------FNLEIKTKVIKKIALLDKNKF 248
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L +L + K + + ++ + N ++ ++ + YL
Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRGIIDNNNIFNVKKLSDIRYLLS 308
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPP 377
+I ++ FI++ + K P + G D+
Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K +G IL + I + ++ L ++ L
Sbjct: 369 NKNIGKILNILLRCVIENPKLNTKNYLIKKIKTLK 403
>gi|23465237|ref|NP_695840.1| RNA nucleotidyltransferase [Bifidobacterium longum NCC2705]
gi|46190719|ref|ZP_00206546.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase
[Bifidobacterium longum DJO10A]
gi|189440311|ref|YP_001955392.1| tRNA nucleotidyltransferase [Bifidobacterium longum DJO10A]
gi|239622867|ref|ZP_04665898.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|312133644|ref|YP_004000983.1| pcnb [Bifidobacterium longum subsp. longum BBMN68]
gi|322692105|ref|YP_004221675.1| RNA nucleotidyltransferase [Bifidobacterium longum subsp. longum
JCM 1217]
gi|23325867|gb|AAN24476.1| probable RNA nucleotidyltransferase [Bifidobacterium longum
NCC2705]
gi|189428746|gb|ACD98894.1| tRNA nucleotidyltransferase [Bifidobacterium longum DJO10A]
gi|239514864|gb|EEQ54731.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|311772903|gb|ADQ02391.1| PcnB [Bifidobacterium longum subsp. longum BBMN68]
gi|320456961|dbj|BAJ67583.1| putative RNA nucleotidyltransferase [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 471
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 83/468 (17%), Positives = 159/468 (33%), Gaps = 67/468 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + L + + +VGG VRD L++ D+D ++ P++ I +
Sbjct: 7 PEAIELGRLFAEQGYELALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFW 66
Query: 72 PTSISYGTIKIICR-----KKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R + ++TT RSD R +V + + D RRDFT+N
Sbjct: 67 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 126
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG +DL ++ D +D LR++R RF A G I
Sbjct: 127 AMALRVPDLQFVDPFGGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGF-RIAP 185
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
D A + + I+S+ER+ E+ KLL + P + + G+ +F ++ + L
Sbjct: 186 DAAEAITSMRDRIDIVSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL- 244
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
Q+ + + VFE D LR ++ K
Sbjct: 245 QIDEHHRHKDVFEHTMIVLERAIALETGPDGPVPAPDLTLRLAAVMHDIGKPKTRRFESG 304
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYL 319
K + + N + Y+
Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNMHLRFHGYVDEPWTDSAVRRYV 364
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
+ +L + Q + ++ + L G++
Sbjct: 365 KDAGHLYERLNRLTRADATTQNKRKAMIFSQAMDEMEERVRELKKKEDFDAIRPDLDGNE 424
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+++ G+ PG +G H + +++ + L++ A Q
Sbjct: 425 IMELLGLEPGPMIGRAYKHMLEYRLDNGPVDHDVAVEE-LKRWYAEIQ 471
>gi|158522765|ref|YP_001530635.1| CBS domain-containing protein [Desulfococcus oleovorans Hxd3]
gi|158511591|gb|ABW68558.1| CBS domain containing protein [Desulfococcus oleovorans Hxd3]
Length = 896
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 65/409 (15%), Positives = 132/409 (32%), Gaps = 24/409 (5%)
Query: 17 NILSLLNKGE-------DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L +L + +VGG VRD ++ S +D+DI R F+
Sbjct: 476 PVLDILKNAGNTAAELEYSAYVVGGFVRDLFLSRSTEDVDIVIEGDGIAFAREFAGRMKA 535
Query: 70 VIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ +GT I D+ + R + V K D RRDFTIN L
Sbjct: 536 RVHYYKKFGTAVITFADGSKIDVASARLEYYQFPAALPTVEMSSIKLDLFRRDFTINTLA 595
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ + + +ED RI R RF +G
Sbjct: 596 VCLNPDKFGLLVDFFSAQRDIKEKTIRVLHSLSFVEDPTRIFRAVRFEQRFGFTIGKMTE 655
Query: 187 LVASIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ------ 239
+ + + LS R++ E+ ++LE +P+ AI + + + ++
Sbjct: 656 GLIKNAVKMEFFRRLSGHRVFGELRQILEEDDPVPAIERLAEFNLLVSLHEALKIDKKTV 715
Query: 240 --EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS-LPREIRYFLI 296
+ ++ + V + + ++ +VL+ +++ + + PR
Sbjct: 716 AALHATREVVSWYDLLFVDKPYMKWMVYLMVLMRGMAQQTTEDLCDRLELPPRHREMADA 775
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ + K LY ++ + + + I+
Sbjct: 776 GRREADTFLHWIQRNPGIKNSELYQRLFGFRVEQMLYVMSVTDSDTVK----KHISRYIL 831
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+ + G D+ + GI PG IL ++ + +++L
Sbjct: 832 TLQHVAPLIKGKDLNEIGIAPGPLYSEILRKILYARLDEKVRTREDELE 880
>gi|322690155|ref|YP_004209889.1| RNA nucleotidyltransferase [Bifidobacterium longum subsp. infantis
157F]
gi|320461491|dbj|BAJ72111.1| putative RNA nucleotidyltransferase [Bifidobacterium longum subsp.
infantis 157F]
Length = 471
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 83/468 (17%), Positives = 159/468 (33%), Gaps = 67/468 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + L + + +VGG VRD L++ D+D ++ P++ I +
Sbjct: 7 PEAIELGRLFAEQGYELALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFW 66
Query: 72 PTSISYGTIKIICR-----KKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R + ++TT RSD R +V + + D RRDFT+N
Sbjct: 67 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 126
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG +DL ++ D +D LR++R RF A G I
Sbjct: 127 AMALRVPDLQFVDPFGGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGF-RIAP 185
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
D A + + I+S+ER+ E+ KLL + P + + G+ +F ++ + L
Sbjct: 186 DAAEAITSMRDRIDIVSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL- 244
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
Q+ + + VFE D LR ++ K
Sbjct: 245 QIDEHHRHKDVFEHTMIVLERAIALETGPDGPVPAPDLTLRLAAVMHDIGKPKTRRFEPG 304
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYL 319
K + + N + Y+
Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNMHLRFHGYVDEPWTDSAVRRYV 364
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
+ +L + Q + ++ + L G++
Sbjct: 365 KDAGHLYERLNRLTRADATTQNKRKAMIFSQAMDEMEERVRELKKKEDFDAIRPDLDGNE 424
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+++ G+ PG +G H + +++ + L++ A Q
Sbjct: 425 IMELLGLEPGPMIGRAYKHMLEYRLDNGPVDHDVAVEE-LKRWYAEIQ 471
>gi|216264893|ref|ZP_03436885.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 156a]
gi|223889371|ref|ZP_03623957.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 64b]
gi|225548827|ref|ZP_03769804.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 94a]
gi|215981366|gb|EEC22173.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 156a]
gi|223885057|gb|EEF56161.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 64b]
gi|225370430|gb|EEG99866.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 94a]
Length = 410
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 94/395 (23%), Positives = 156/395 (39%), Gaps = 18/395 (4%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II
Sbjct: 20 NNYEFYLVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75
Query: 85 RKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141
KK F+ITT R + + A +T++ D RRDFTINA+ D +ID G
Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLLKDLERRDFTINAIAMDIFNFNIIDCYNG 135
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
DL +TI+ IG+ + R ED LRILR RF + + + K + L I
Sbjct: 136 KKDLNKKTIRCIGNPNKRFEEDALRILRAARFSSTLNFNIEKNTLISMKYKKENILMISK 195
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+KLLE N I ++ FK +L+ ++VI+ + +
Sbjct: 196 ERIKNE-FHKLLEGINIQKGIYYLKKVDFFKNF------FNLEIKTKVIKKIALLDKNKF 248
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L +L + K + + ++ + N ++ ++ + YL
Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRGIIDNNNIFNVKKLSDIRYLLS 308
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPP 377
+I ++ FI++ + K P + G D+
Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K +G IL + I + ++ L ++ L
Sbjct: 369 NKNIGKILNMLLRCVIENPKLNTKNYLIKKIKTLK 403
>gi|187918562|ref|YP_001884125.1| poly(A) polymerase [Borrelia hermsii DAH]
gi|119861410|gb|AAX17205.1| poly(A) polymerase [Borrelia hermsii DAH]
Length = 405
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 97/390 (24%), Positives = 167/390 (42%), Gaps = 12/390 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ D++ I + N + +VGGA+RD L+ D D T P +MR+F
Sbjct: 6 NTKDIMKISKIFNNNNYEFFLVGGALRDLLLKKIPDDFDFTTNATPKEIMRLFPNN---- 61
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALY 128
I T + +GTI II KK F++TT R D+ + + + FT+ D RRDFTIN++
Sbjct: 62 IQTGMKHGTISIIFNKKIFEVTTYRIDIDYENKRSPKEVKFTKSLNEDLQRRDFTINSIA 121
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ ++IDY G DL + IK IG+ + R ED LRILR RF + + +
Sbjct: 122 MNILNCEIIDYYNGKQDLNKKIIKCIGEPNKRFEEDALRILRAARFASTLDFTIDQNTLI 181
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
K L LS ERI +E KLLE KNP I ++ F+ F +L
Sbjct: 182 SMKYKKANILL-LSKERINNEFIKLLEGKNPRKGIHYLQKINFFRYFFNTEIN---KKLK 237
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
I ++ + +++ F + + L + + + ++ F + N +
Sbjct: 238 NKITLLNRNKFYLKAIVIFTSKKDIRCLREKLELLRFSNKDIKLILFYKTIINEINTLRI 297
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI-IHWKKPLFPLT 366
+ +++ L + L I+ AL + + ++ + +
Sbjct: 298 KKLHDVRILLSKATRENYKEILDIYKALKGRDNKLKFIMNKIKSKKLLNDPLSLKELKIN 357
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
G+D+ + K +G IL + +E + +
Sbjct: 358 GNDIKDLKLTDNKNIGEILNYLLREVLTNP 387
>gi|170288018|ref|YP_001738256.1| CBS domain-containing protein [Thermotoga sp. RQ2]
gi|170175521|gb|ACB08573.1| CBS domain containing protein [Thermotoga sp. RQ2]
Length = 863
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 86/414 (20%), Positives = 155/414 (37%), Gaps = 25/414 (6%)
Query: 12 DSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D ++N+ LL K D+ +VGG VRD L+ + D+DI +
Sbjct: 451 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDVDIVVEGNALEFAEYAKRFL 510
Query: 68 YKVIPTSISYGTIK-IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + T + DI T R + V K D RRDFTINA
Sbjct: 511 PGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEISTIKKDLYRRDFTINA 570
Query: 127 LYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ K +ID+ GG DL+ I+ + ++D RILR RF + +
Sbjct: 571 MAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHT--LSFVDDPTRILRAIRFEQRFDFRIE 628
Query: 183 DSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ + ++G + + R+ E+ K+LE KNPL +I M + K +F
Sbjct: 629 ETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTYYT 688
Query: 242 ------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+ + E+ F V + + D +S + ++SL R++ +
Sbjct: 689 PSMDGKMENLFRNIPWVEENFGEVDKFYAVLHVFLEFYDDESWKEVRDRYSLRRDLINEI 748
Query: 296 ISFFNCNFNQKTL-SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ S Y V + FLA ++L++ +
Sbjct: 749 RHVEKSAPALLEMLSERVPASFVYPLVKGVSNETICHFLAYLSGEKEELFKSYLLKIKNT 808
Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ + G+ +++ GI GK +G +L + ++ + +E L +L
Sbjct: 809 KLEK------INGEYLIRKGITSGKIIGEVLEKILMKKLDGDTRDEEEILEEVL 856
>gi|15611650|ref|NP_223301.1| polynucleotide adenylyltransferase [Helicobacter pylori J99]
gi|4155144|gb|AAD06174.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 76/403 (18%), Positives = 139/403 (34%), Gaps = 25/403 (6%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + +L + + K + +VGG +RD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEKELKELFDIYEKSPYELYLVGGCMRDCLMGITPKDYDLTSNALVNESKELLLKHDF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--ADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + + D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNHQSYEITTFRMEKGHIKHRKPKELVFSARLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N + N+TI+ +G+A R ED LRILR RF A G K
Sbjct: 122 IAYSPTKGLIDPFKGQNAIENQTIECVGEARLRFFEDALRILRALRFSATLGFK------ 175
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + ++ + + L
Sbjct: 176 -------IAASTKRAVFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVTQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + ++ LR + P++ C+
Sbjct: 229 EKIENLGFLKNAPLNLELR------LLGFFKHQKSLENLRYPKKTCVLFAQAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ +KK L
Sbjct: 283 NIHSKTELKFLLKDHDLEPFNLALDFYALENPKRALKIKGLLKEIFDSNEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +K+G IL C I + L L+
Sbjct: 343 GGTLQSLGYQH-QKIGEILNACLNSVIENPKNN---ALEWLIE 381
>gi|221217911|ref|ZP_03589378.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 72a]
gi|224532377|ref|ZP_03673007.1| polynucleotide adenylyltransferase [Borrelia burgdorferi WI91-23]
gi|224533346|ref|ZP_03673940.1| polynucleotide adenylyltransferase [Borrelia burgdorferi CA-11.2a]
gi|225550052|ref|ZP_03771013.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 118a]
gi|221192217|gb|EEE18437.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 72a]
gi|224512684|gb|EEF83055.1| polynucleotide adenylyltransferase [Borrelia burgdorferi WI91-23]
gi|224513511|gb|EEF83868.1| polynucleotide adenylyltransferase [Borrelia burgdorferi CA-11.2a]
gi|225369511|gb|EEG98963.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 118a]
gi|312147829|gb|ADQ30488.1| polynucleotide adenylyltransferase [Borrelia burgdorferi JD1]
Length = 410
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 93/395 (23%), Positives = 155/395 (39%), Gaps = 18/395 (4%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II
Sbjct: 20 NNYEFYLVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75
Query: 85 RKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141
KK F+ITT R + + A +T++ D RRDFTINA+ D +ID G
Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDCYNG 135
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
DL + I+ IG+ + R ED LRILR RF + + + K + L I
Sbjct: 136 KKDLNKKIIRCIGNPNKRFEEDALRILRAARFSSTLNFNIEKNTLISMKYKKENILMISK 195
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+KLLE N I ++ FK +L+ ++VI+ + +
Sbjct: 196 ERIKNE-FHKLLEGINIQKGIYYLKKVDFFKNF------FNLEIKTKVIKKIALLDKNKF 248
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L +L + K + + ++ + N ++ ++ + YL
Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRGIIDNNNIFNVKKLSDIRYLLS 308
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPP 377
+I ++ FI++ + K P + G D+
Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K +G IL + I + ++ L ++ L
Sbjct: 369 NKNIGKILNMLLRCVIENPKLNTKNYLIKKIKTLK 403
>gi|297584394|ref|YP_003700174.1| polynucleotide adenylyltransferase region [Bacillus
selenitireducens MLS10]
gi|297142851|gb|ADH99608.1| Polynucleotide adenylyltransferase region [Bacillus
selenitireducens MLS10]
Length = 384
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 73/399 (18%), Positives = 144/399 (36%), Gaps = 30/399 (7%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I L ++ I GGAVRD + DID++T P++V++ F +T+ P
Sbjct: 7 ARFIQKKLTDQGFETYITGGAVRDLYLGRKASDIDLSTEAGPNQVIKAFERTK----PIG 62
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
I +GTI +I + F++TT R D RDFTINA+ +
Sbjct: 63 IEFGTILVILEGEGFEVTTFRGT--------------TITEDLACRDFTINAMALSNDWQ 108
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
+ID G DL I+ + A +L+D +R++R RF +G + + A
Sbjct: 109 LIDPFNGRQDLAKGLIQTVASAEGTLLDDPIRMIRSLRFALQFGFRESEDLIACIQRHAD 168
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
K + + + + ++ S ++++ I +
Sbjct: 169 KIRRAAVERITGEFNKISMVTWTKEKS----EYFIDHPALLPFIELFSHNRINTEIRSVG 224
Query: 255 VFEWKIDSLLRF-IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313
E +++ ++ + + D + + F L + +S + +
Sbjct: 225 FPEKELNEIIWWVFAVYEEHDPGRVRQRLRTFKLSNKTVETAVSVCRM-TDLFRKNGSWC 283
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373
Y G+ V+ L L Y DT + ++ K +TG D+++
Sbjct: 284 AMDLYQAGETVLR---YACLLLGYLMDEPPDTDRQITKYRELPITDKSELAVTGKDLIRL 340
Query: 374 GIPPGK--KVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+P + L ++ + + L +++
Sbjct: 341 -VPEIPKREYSYWLKELTALVVDRQIENDEAILITYVKE 378
>gi|28572951|ref|NP_789731.1| RNA nucleotidyltransferase [Tropheryma whipplei TW08/27]
gi|28411084|emb|CAD67469.1| putative RNA nucleotidyltransferase [Tropheryma whipplei TW08/27]
Length = 478
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 89/463 (19%), Positives = 166/463 (35%), Gaps = 62/463 (13%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
H+ ++ + + + +VGG VRD ++ V D+D AT P +R+
Sbjct: 19 HEDSVLALTAAFCAKNYELALVGGPVRDCFLDRPVVDLDFATNATPQETLRLVKPISSGC 78
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYA 129
T YGT+ + + +ITT RSD + R KV F + D +RRDFT+NA+
Sbjct: 79 WTTGARYGTVSARVKGRVVEITTYRSDNYSANTRKPKVSFGGSLEEDLIRRDFTVNAMAF 138
Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
G+++D GL D+ N+ + +D LR+LR R + G I + L+
Sbjct: 139 RVPSGQLVDISSGLQDIANKRLATPIKPELSFADDPLRMLRAARLSSQLGF-KISENSLL 197
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K LKI+S+ER+ E KLL +P ++ + N G+ ++ + L+
Sbjct: 198 AMKDCAKRLKIVSAERVRGEFEKLLCCADPTGSLRVLVNTGLINHFLPEISALRLEIDEH 257
Query: 249 VIEAE-----------------QVFEWKIDSLLRFIVLISWQDKKSILSMAKK------- 284
+ + F D +LR L+ K +
Sbjct: 258 FHHKDVYEHSLIVLRQAIKLEQERFRNGPDLVLRLAALMHDIGKPATRRKHPDGSVTFYH 317
Query: 285 ---------------FSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKV 324
+ + + + + ++ + +++ G +
Sbjct: 318 HDTVGAKMASKRLAAMRFDKNVIFAVTRLIQLHLRFFGYGDQSWTDSAVRRYVRDAGPQ- 376
Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----------LFPLTGDDVVK-Y 373
+ +L I + ++ L G++++
Sbjct: 377 -LERLHILTRADVTTRNQNKARRLRAAYDNLEERIAKLREQEELDAIRPELNGEEIMSLL 435
Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ PGK+VG + +++ QE LL L S+
Sbjct: 436 DLKPGKEVGVAYKYLLDLRLDNGPIGKQESARKLL--LWWKSE 476
>gi|310779055|ref|YP_003967388.1| CBS domain containing protein [Ilyobacter polytropus DSM 2926]
gi|309748378|gb|ADO83040.1| CBS domain containing protein [Ilyobacter polytropus DSM 2926]
Length = 857
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 86/410 (20%), Positives = 161/410 (39%), Gaps = 26/410 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPT 73
L I + K ++K +VGG VRD ++ + +DIDI + I
Sbjct: 459 LKAIEKIAKKRKEKVYMVGGIVRDIILGIPNKDIDIVVEGEGIAFAWDLKNELNGEKIVV 518
Query: 74 SISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ T +I K D+ T R + V + D RRDFTIN+L +
Sbjct: 519 HEKFKTAVVIVDKDLKIDVATSRVEYYEYPTSLPSVDYGSIREDMYRRDFTINSLALEVD 578
Query: 133 G----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+++D+ G D++NR I+ + + +ED RI+R FRF + Y K +
Sbjct: 579 YQKFGELVDFFNGYRDIQNREIRILH--NFSFVEDPTRIIRAFRFASRYDFKIEEETERF 636
Query: 189 ASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-----EIS 242
+ G K +S R+ +E +L KNP A+ + + K I +++ +
Sbjct: 637 LKDAVENGFLKKISWPRVKNEFKIILGDKNPEKALNFLEKYDVLKNIHHNIKLTEKMKKH 696
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS-FFNC 301
L++L+ + E + K ++ F++L+ I + KFS ++ R
Sbjct: 697 LEELNSLGEMFSQLKLK-KWIMAFLILMEDLKSDEIELIFNKFSFSQDFRKKYEFGIKKR 755
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ L + Y +++ L + + + FI + K
Sbjct: 756 SEALSKLKKADKNSEIYDTLNEISFEVLMLIYLEGKKSSREKIRKFIFDL-------SKI 808
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ-LSQEDLHHLLRK 410
+TG D++ G P + IL ++ ++ +++E L + K
Sbjct: 809 KPLVTGADLISVGYKPSPEFRKILEDALYRQLD--YKGITKEQLMSNINK 856
>gi|289578319|ref|YP_003476946.1| polynucleotide adenylyltransferase region [Thermoanaerobacter
italicus Ab9]
gi|297544599|ref|YP_003676901.1| polynucleotide adenylyltransferase region [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|289528032|gb|ADD02384.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter
italicus Ab9]
gi|296842374|gb|ADH60890.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 388
Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats.
Identities = 77/406 (18%), Positives = 143/406 (35%), Gaps = 32/406 (7%)
Query: 14 DLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
DLI +L ++ K + KS IVGG VRD L+ + DID+ I I
Sbjct: 9 DLIRLLKEISLKTKIKSYIVGGVVRDFLLGVKNLDIDVVVEGDGIEFAYILLSYLKGDIV 68
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
++ T + DI + R + + + D RRDFTINAL D
Sbjct: 69 VYEAFRTATLSYHNFSIDIISARKEYYECPAALPTIEFSNIYDDMARRDFTINALAYDVM 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
I + + + + ++D RI R R+ Y I+ +
Sbjct: 129 EGKILDYFNGLEDLKKGVIRV-LHSKSFIDDPTRIFRAIRYATRYSF-EIEEKTHNLMKE 186
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + +++LS++RI +E+ +L+ I + + GI K IF ++ +
Sbjct: 187 SIENIRLLSADRIRNELLLVLKEDKAKEMIEKIISYGIDKVIFDEIT----LNTQNLDTV 242
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E ++ L + +D I + +
Sbjct: 243 YTNIEVELYRFLVLFYYLKEEDINEIEKKL----------------------RINKIYFK 280
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL--SDIIHWKKPLFPLTGDDV 370
K + +++ I + T ++ ++V+ K + G D+
Sbjct: 281 ALKDLFFLREQLNCQNKNIRKIRETIDKTKEEVLRAIEVMEGEKAEKIIKGKLTVRGKDI 340
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G+PP G +L + IN +E++ L++LI +
Sbjct: 341 KNLGLPPSPLYGELLDKVFEAKINGIITTGEEEI-EFLKRLIEKLK 385
>gi|120436629|ref|YP_862315.1| tRNA nucleotidyltransferase [Gramella forsetii KT0803]
gi|117578779|emb|CAL67248.1| tRNA nucleotidyltransferase [Gramella forsetii KT0803]
Length = 477
Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats.
Identities = 81/457 (17%), Positives = 158/457 (34%), Gaps = 57/457 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKT-- 66
H I + ++GG VRD ++ +DIDI + + S+
Sbjct: 11 LHHKIFNVISEAAEDLSVDAYVIGGFVRDHILERGEPKDIDIVAVGSGIELAKKVSEKLP 70
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ ++GT + + R + +V + D RRDFTINA
Sbjct: 71 NKPKVQVFKNFGTAMLRSEDMEIEFVGARKESYRKDSRKPIVEDGTLEDDQNRRDFTINA 130
Query: 127 LYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L ++D G +DL+ + IK D +D LR+ R RF + I
Sbjct: 131 LALKLNKDGFGDLLDPFNGYDDLKKKIIKTPLDPDITYSDDPLRMYRAIRFASQLNFM-I 189
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI- 241
+++ L A + +KI+S ERI E+NK++ + P +Y G+ K+I ++ +
Sbjct: 190 EAESLKAIKANNERIKIISKERIVDELNKIMLSDKPSKGFALLYKTGLLKKIIPELTALA 249
Query: 242 ----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP--- 288
+ + + + E D LR+ L+ K KK
Sbjct: 250 GIDEVEGQTHKDNFWHTLEVVDNISENTDDLWLRWAALLHDIGKAPTKKFHKKIGWTFHG 309
Query: 289 --------------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
E F+ + ++ +
Sbjct: 310 HEFVGAKMVYKLFKRLRLPLNEKMKFVQKMVLMSSRPIAIADDHVTDSAVRRLIFDAGDN 369
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YG 374
++ + L ++T ++ + ++ H + P++G+++++ +G
Sbjct: 370 IEDLMTLCEADITTKNPKRFKKYHNNFKLVRQKIQEVEERDHVRNFQPPVSGEEIMQTFG 429
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL-LRK 410
I P ++VG I K+ + + E L+K
Sbjct: 430 IKPSREVGLIKDAIKEAILEGNIPNEYEAAREFMLKK 466
>gi|229816983|ref|ZP_04447265.1| hypothetical protein BIFANG_02238 [Bifidobacterium angulatum DSM
20098]
gi|229785728|gb|EEP21842.1| hypothetical protein BIFANG_02238 [Bifidobacterium angulatum DSM
20098]
Length = 478
Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats.
Identities = 81/472 (17%), Positives = 157/472 (33%), Gaps = 64/472 (13%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M+ + + + + + + +VGG VRD L++ D+D T+ P++
Sbjct: 1 MMERPHVNFEVWPEAMELGEMFAAEGFELALVGGPVRDLLLHRRSHDLDFCTSARPEQFE 60
Query: 61 RIFSKTR-YKVIPTSISYGTIKIICR-----KKYFDITTLRSD-LITDGRYAKVVFTRDW 113
I K +GT+ + R + ++TT R+D D R +V +
Sbjct: 61 PILRKFGRDGFWDMGRKFGTLGAMRRRADGTEVQVEVTTYRTDAYNPDSRKPEVAYGDTL 120
Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
+ D RRDFT+NA+ + + +D GG NDL ++ D +D LR++R R
Sbjct: 121 EGDLSRRDFTVNAMALRVPELEFVDPFGGANDLAKGVLRTPVDPRQSFDDDPLRMMRAVR 180
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
F A G +I+ + A ++I+S+ER+ E+ K L + P I + G+
Sbjct: 181 FVAQLGF-SIEPETAEAMYDMTDRIRIVSAERVRDELVKTLLSDRPRAGIEALVESGLAD 239
Query: 233 EIFLDVQEISL-------------------DQLSQVIEAEQVFEWKIDSLLRFIVLISWQ 273
+F ++ + L D+ + + + D LR L+
Sbjct: 240 IVFPEIPALELQIDEHHRHKDVFEHTMIVLDRAVALETDDDGPVPRPDLTLRLAALMHDI 299
Query: 274 DKKSILSM----------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
K + + + N +
Sbjct: 300 GKPKTRRFEAGGKVSFHHHDVVGAKLTRKRLRALHFDHHLVEDVSELVNLHLRFHGYVDE 359
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF-------------ILQVLSDIIHW 358
K + L + T Q+ ++ L +
Sbjct: 360 PWTDSAVRRYVKDAGHLYERLNRLTRADATTQNRRKAMVFASAMDEMEDRVRELKKKEDF 419
Query: 359 KKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ G++++ G+ PG +G H +++ + L R
Sbjct: 420 DAIRPDINGNEIMDLLGLEPGPMIGKAYRHMLDYRLDNGPVDHDVAVAELKR 471
>gi|110598827|ref|ZP_01387084.1| Polynucleotide adenylyltransferase region:Metal-dependent
phosphohydrolase, HD subdomain [Chlorobium ferrooxidans
DSM 13031]
gi|110339558|gb|EAT58076.1| Polynucleotide adenylyltransferase region:Metal-dependent
phosphohydrolase, HD subdomain [Chlorobium ferrooxidans
DSM 13031]
Length = 513
Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats.
Identities = 87/468 (18%), Positives = 162/468 (34%), Gaps = 60/468 (12%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M + Q + L I L + +VGG VRD LM DIDI P
Sbjct: 35 MTTRAQ--FTLPEILYRIGDLADSSSLNCYLVGGYVRDLLMQRPCSDIDIMVIGDPVPFA 92
Query: 61 RIFSKT-RYKVIPTSISYGTIKI-----ICRKKYFDITTLRSDLITDGRYAKVVFTRDWK 114
+ + + T ++ ++ R + V
Sbjct: 93 GTVQRELHGRNFVLFERFRTAQLELSDPQHGSFKVELVGARKESYNPDSRKPVTLIGTLD 152
Query: 115 ADSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170
D RRDFTINAL +ID+ GL+DLR+ +K D +D LR++R
Sbjct: 153 DDLSRRDFTINALAMVLNRDGRNDIIDHFNGLDDLRSGILKTPLDPEQTFSDDPLRMMRA 212
Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230
RF A K + + ++I+S ER+ E K+++A P ++ +Y G+
Sbjct: 213 ARFAAQLDFKLLPDVLAAMK-SMHERIRIVSIERVSHEFFKIMQASRPSVGLIILYETGL 271
Query: 231 FKEIFLDVQEISLDQ-----------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279
EI DV ++ + + + + LR L+ K +
Sbjct: 272 LHEILPDVAAMAGIEQVDGMGHKDTLFHTFQVIDNLAAHSDNLWLRVAALLHDIAKPATK 331
Query: 280 SMA----------------------KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
++ P + ++ + LS EI
Sbjct: 332 RFCKSAGWSFHGHDAVGVRIVGKIFRQMRWPLDPLDYVQKMVRLHHRPIPLSKEEISDSA 391
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFP 364
L+ + L ++T ++ ++Q++S+ + +K P
Sbjct: 392 IRRLMFDAGEDLQDLMNLCRADVTSKNPRKVIQIMSNFNNVEKKIAEVGEKDLLARWRPP 451
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
++G+D+++ G+ G+ VG I + I+ +E ++++
Sbjct: 452 ISGEDIMETLGLGEGRVVGMIKKKMENAVIDGLIPYDREAALAYIKEI 499
>gi|296455134|ref|YP_003662278.1| metal dependent phosphohydrolase [Bifidobacterium longum subsp.
longum JDM301]
gi|296184566|gb|ADH01448.1| metal dependent phosphohydrolase [Bifidobacterium longum subsp.
longum JDM301]
Length = 471
Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats.
Identities = 84/468 (17%), Positives = 159/468 (33%), Gaps = 67/468 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + L + + +VGG VRD L++ D+D ++ P++ I +
Sbjct: 7 PEAIELGRLFAEQGYELALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFW 66
Query: 72 PTSISYGTIKIICR-----KKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R + ++TT RSD R +V + + D RRDFT+N
Sbjct: 67 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDTYDTDSRKPEVNYGDTLEGDLSRRDFTVN 126
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG +DL ++ D +D LR++R RF A G I
Sbjct: 127 AMALRVPDLQFVDPFGGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGF-RIAP 185
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
D A + L I+S+ER+ E+ KLL + P + + G+ +F ++ + L
Sbjct: 186 DAAEAITSMRDRLDIVSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL- 244
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
Q+ + + VFE D LR ++ K
Sbjct: 245 QIDEHHRHKDVFEHTMIVLERAIALETGPDGPVPAPDLTLRLAAVMHDIGKPKTRRFEPG 304
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYL 319
K + + N + Y+
Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNMHLRFHGYVDEPWTDSAVRRYV 364
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
+ +L + Q + ++ + L G++
Sbjct: 365 KDAGHLYERLNRLTRADATTQNKRKAMIFSQAMDEMEERVRELKKKEDFDAIRPDLDGNE 424
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+++ G+ PG +G H + +++ + L++ A Q
Sbjct: 425 IMELLGLEPGPMIGRAYKHMLEYRLDNGPVDHDVAVEE-LKRWYAEIQ 471
>gi|28493767|ref|NP_787928.1| poly(A) polymerase [Tropheryma whipplei str. Twist]
gi|28476809|gb|AAO44897.1| poly(A) polymerase [Tropheryma whipplei str. Twist]
Length = 484
Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats.
Identities = 89/463 (19%), Positives = 166/463 (35%), Gaps = 62/463 (13%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
H+ ++ + + + +VGG VRD ++ V D+D AT P +R+
Sbjct: 25 HEDSVLALTAAFCAKNYELALVGGPVRDCFLDRPVVDLDFATNATPQETLRLVKPISSGC 84
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYA 129
T YGT+ + + +ITT RSD + R KV F + D +RRDFT+NA+
Sbjct: 85 WTTGARYGTVSARVKGRVVEITTYRSDNYSANTRKPKVSFGGSLEEDLIRRDFTVNAMAF 144
Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
G+++D GL D+ N+ + +D LR+LR R + G I + L+
Sbjct: 145 RVPSGQLVDISSGLQDIANKRLATPIKPELSFADDPLRMLRAARLSSQLGF-KISENSLL 203
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K LKI+S+ER+ E KLL +P ++ + N G+ ++ + L+
Sbjct: 204 AMKDCAKRLKIVSAERVRGEFEKLLCCADPTGSLRVLVNTGLINHFLPEISALRLEIDEH 263
Query: 249 VIEAE-----------------QVFEWKIDSLLRFIVLISWQDKKSILSMAKK------- 284
+ + F D +LR L+ K +
Sbjct: 264 FHHKDVYEHSLIVLRQAIKLEQERFRNGPDLVLRLAALMHDIGKPATRRKHPDGSVTFYH 323
Query: 285 ---------------FSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKV 324
+ + + + + ++ + +++ G +
Sbjct: 324 HDTVGAKMASKRLAAMRFDKNVIFAVTRLIQLHLRFFGYGDQSWTDSAVRRYVRDAGPQ- 382
Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----------LFPLTGDDVVK-Y 373
+ +L I + ++ L G++++
Sbjct: 383 -LERLHILTRADVTTRNQNKARRLRAAYDNLEERIAKLREQEELDAIRPELNGEEIMSLL 441
Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ PGK+VG + +++ QE LL L S+
Sbjct: 442 DLKPGKEVGVAYKYLLDLRLDNGPIGKQESARKLL--LWWKSE 482
>gi|115640845|ref|XP_784774.2| PREDICTED: similar to Chain A, Crystal Structure Of Human
Cca-Adding Enzyme, partial [Strongylocentrotus
purpuratus]
Length = 386
Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats.
Identities = 95/312 (30%), Positives = 154/312 (49%), Gaps = 9/312 (2%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L + L + + + I GGAVRD L QD+D AT PD++ +F+K +
Sbjct: 77 LFTPELKQLAELFERYQYELRIAGGAVRDLLTKKQPQDVDFATIATPDQMKEMFTKEGIR 136
Query: 70 VIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI K+ F+ITTLR D +TDGR+A+V FT DW+ D+ RRD TIN++
Sbjct: 137 MINAKGEKHGTITARINDKENFEITTLRIDRVTDGRHAEVEFTTDWRTDAERRDLTINSM 196
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSD 185
+ G + D+ G L I F+G+A RI EDYLRILR+FRF+ +
Sbjct: 197 FLGLDGTLYDFFNGKEALERCHIAFVGNAATRIQEDYLRILRYFRFYGRIARESNKHTPE 256
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L + + GL +S ERIW E+ K+L + I MY+ + + I + E L +
Sbjct: 257 TLQSIRENGHGLAGISGERIWMEVRKILTGNFAADLIHCMYDLDLARHIGIP-PEADLQE 315
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
L +V + Q ++L + +D+ +L+M ++ + E R + ++
Sbjct: 316 LHKVYQRSQSLHPHPVTILSALF----KDENDVLTMEQRMRISAEERKTALYVIAERGDK 371
Query: 306 KTLSIPEIKKLF 317
+ + +
Sbjct: 372 PHKNPLKPYQDI 383
>gi|257437855|ref|ZP_05613610.1| metal dependent phosphohydrolase [Faecalibacterium prausnitzii
A2-165]
gi|257199515|gb|EEU97799.1| metal dependent phosphohydrolase [Faecalibacterium prausnitzii
A2-165]
Length = 464
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 85/292 (29%), Positives = 139/292 (47%), Gaps = 14/292 (4%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M +I D +L L+ + VGG VRDSL+ L D D+ T+ P++VM
Sbjct: 1 MTTIK-----LDPGAALLLDALHGAGHAAYAVGGCVRDSLLGLDPHDWDLCTSARPEQVM 55
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSL 118
+F + K IPT + +GT+ + + ++ TT R++ +DGR+ V F + + D
Sbjct: 56 ALFGEE--KCIPTGLQHGTVTVKQGGRLYETTTFRTEGAYSDGRHPDAVCFVPEVREDLA 113
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDFTINA+ + +ID GG +DL ++ +G+ R ED LRILR +RF A +G
Sbjct: 114 RRDFTINAMAYSAEEGLIDPFGGRDDLAAHRVRAVGEPERRFEEDALRILRLYRFAARFG 173
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
ID VA+ L +S+ERI E+ KLL A P + + I E+ +
Sbjct: 174 F-AIDPATGVAARALGPHLDCVSAERIQEELLKLLAAPRPGSYLEPAVLAVILPELEPEK 232
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPR 289
Q ++ +++ E ++++ R L+ + +K
Sbjct: 233 QP---ERFAELCRTIDRIEPTVENVPARLAALLCPLGEAGARKALRKLKCSN 281
Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 10/70 (14%), Positives = 25/70 (35%)
Query: 345 TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
++ ++ + + G D++ G+ PG + +L + I ++ L
Sbjct: 395 RAEAERLTAENACCRVSQLAVNGRDLMAAGVRPGPGLRQVLNALLEAVITGQTPNEKDAL 454
Query: 405 HHLLRKLIAS 414
+ AS
Sbjct: 455 LAAAAQFSAS 464
>gi|260062206|ref|YP_003195286.1| putative polyA polymerase [Robiginitalea biformata HTCC2501]
gi|88783768|gb|EAR14939.1| putative polyA polymerase [Robiginitalea biformata HTCC2501]
Length = 486
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 67/446 (15%), Positives = 144/446 (32%), Gaps = 56/446 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFSKT-- 66
+ + ++ ++GG VRD + + DIDI + +
Sbjct: 10 LDHPIFKKLSDTARELSLETYVIGGFVRDYFLGREQKKDIDIVAVGSGIALAEKLAAGLP 69
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ ++GT + + + R + V + D RRDFTINA
Sbjct: 70 GKPRVSVFRNFGTAMVRHGELELEFVGARKESYNRDSRKPAVEDGSLEDDQKRRDFTINA 129
Query: 127 LYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L + ++D GG++DL I+ +D LR++R RF A G +
Sbjct: 130 LALSLNPEDFGRLLDPFGGMDDLEAGLIRTPLAPAETYSDDPLRMIRAIRFAAQLGFRIE 189
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ + ++ I+S ERI E+NK+L + P + ++ G+ + I ++
Sbjct: 190 RDSLNAIASQHERLR-IVSMERIVEELNKILLTEKPSVGLGLLFKTGLLRHILPELVALQ 248
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSL 287
Q + + + + + + LR+ L+ K F
Sbjct: 249 GIEEKEGQRHKDNFWHTLEVVDNISKNTDNLWLRWAALLHDIGKAPTKRFDKKVGWTFHS 308
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY--------GDKVMI-----------AK 328
+ ++ + + + GD V
Sbjct: 309 HEFVGSKMVYKIFRRLRLPLNEKMKYVRKLVMMSSRPVGLSGDDVTDSAVRRLVFDAGDD 368
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVV-KYG 374
+ + L ++T ++ + L + + P++GD ++ +
Sbjct: 369 VDDLMTLCEADITTKNPRKQKRYLENFGEVRQKIAEVEERDRVRNFQPPVSGDQIMAAFN 428
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLS 400
+ P ++G + K+ +
Sbjct: 429 LEPSPEIGRVKDAIKEAILEGEIPNE 454
>gi|323357972|ref|YP_004224368.1| tRNA nucleotidyltransferase/poly(A) polymerase [Microbacterium
testaceum StLB037]
gi|323274343|dbj|BAJ74488.1| tRNA nucleotidyltransferase/poly(A) polymerase [Microbacterium
testaceum StLB037]
Length = 479
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 91/441 (20%), Positives = 150/441 (34%), Gaps = 61/441 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + + IVGG VRD+L+ D D T PD ++ +
Sbjct: 17 HPVVATLARVFADAGRDLAIVGGPVRDALLGRLTHDFDFTTDARPDEILALVKPVSSVQW 76
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GTI + +ITT R+D R V F +AD RRDFT+NA+
Sbjct: 77 DVGRDFGTIGARVHGEQVEITTYRADSYDGVTRKPTVEFGDTLEADLTRRDFTVNAMALR 136
Query: 131 QQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ +D GG+ DL ++ D +D LR+LR RF + E +ID D L A
Sbjct: 137 VPARTLVDPTGGVEDLIAGRLRTPIDPAVSFGDDPLRMLRGARFASQL-EFDIDPDTLDA 195
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG----------------IFKE 233
+ ++ L+I+S ER+ SE+ +LL+ +P+ I +
Sbjct: 196 IAELRQTLQIVSPERVQSELVRLLQTDDPVRGIRVLVETRLIDEFLPEVPALRLEVDEHH 255
Query: 234 IFLDVQEISLDQLSQVIEAEQ--VFEWKIDSLLRFIVLISWQDKK--------------- 276
DV E SL L Q I E+ + D LR L+ K
Sbjct: 256 HHKDVYEHSLTVLRQAIALEKQRTPDAAPDVPLRLAALLHDIGKPATRRLEPGGGVTFHH 315
Query: 277 -------SILSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKV 324
+ + + + + +++ GD+
Sbjct: 316 HDIKGARMARKRLQALRFDAATTTVVSRLIELHLRFFGYAEGAWTDAAVRRYVRDAGDE- 374
Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDII----------HWKKPLFPLTGDDVVK-Y 373
+ +L I + + DI L G+ + +
Sbjct: 375 -LERLHILTRADVTTRNKRKAQRLASAYDDIESRIATLREQEEIDAIRPELDGNRIQEVL 433
Query: 374 GIPPGKKVGNILVHCKQEWIN 394
GI PG++VG ++
Sbjct: 434 GIAPGREVGEAYRFLLDLRLD 454
>gi|300776646|ref|ZP_07086504.1| tRNA nucleotidyltransferase [Chryseobacterium gleum ATCC 35910]
gi|300502156|gb|EFK33296.1| tRNA nucleotidyltransferase [Chryseobacterium gleum ATCC 35910]
Length = 472
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 79/465 (16%), Positives = 170/465 (36%), Gaps = 64/465 (13%)
Query: 11 HDSDLINILSLLNKGEDK----SCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSK 65
+ +L + ++++ ++ IVGG VRD LMN DID T + + ++
Sbjct: 7 QNKNL-KLFKIISEAAERNHQSVYIVGGYVRDLLMNRKASTDIDFVTEQSGIELAQNVAQ 65
Query: 66 TRYKV--IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
+ +YGT I ++ + R + T+ V + D RRDFT
Sbjct: 66 DIDPKLKVSVFKTYGTAMIKYKELDLEFVGARKESYTENSRKPEVEGGSLEDDQKRRDFT 125
Query: 124 INALYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
INA+ ++ID G++DL ++ + +D LR++R RF +
Sbjct: 126 INAMAISLNKNNFGELIDPFNGIDDLEKEILRTPLEPAQTYSDDPLRMMRAVRFAS-TLH 184
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
I+ + L A + + ++I+S ERI E NK++ ++ P + M G+ K I ++
Sbjct: 185 FKIEENSLKAIQQEAERIRIVSMERIMVEFNKIMLSEKPSVGLRLMEQTGLLKLIIPELI 244
Query: 240 EIS-----------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM-----AK 283
E+ + + + + + LR+ L+ K
Sbjct: 245 ELKGVEEVEGQTHKDNFYHTLEVVDNISVNTDNLWLRWAALLHDIGKAPTKKFVEGTGWT 304
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI----------------- 326
+ + F + ++K+ L + +
Sbjct: 305 FHGHEFLGSKMVKTLFQRLKLPLGSDMKYVQKMVKLSSRPIALITDDASDSALRRLLFDA 364
Query: 327 -AKLKIFLALHYNNLTHQDTCFILQVLSDII-------------HWKKPLFPLTGDDVVK 372
L+ L ++T +++ + + + P+TG+++++
Sbjct: 365 GENLEDLFTLCKADITTKNSRKQEKFKKNFEYVAVKIKEVEEKDQVRNFQPPITGEEIME 424
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ PG+++G + K+ + +E+ + IA ++
Sbjct: 425 MFNLKPGREIGILKEKVKEAILEGEIPNEKEEATKFV---IAEAE 466
>gi|309801955|ref|ZP_07696069.1| tRNA adenylyltransferase [Bifidobacterium dentium JCVIHMP022]
gi|308221403|gb|EFO77701.1| tRNA adenylyltransferase [Bifidobacterium dentium JCVIHMP022]
Length = 476
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 85/448 (18%), Positives = 156/448 (34%), Gaps = 66/448 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + + + + +VGG VRD L++ D+D T+ P++ I +
Sbjct: 13 PEAIELGRMFAEEGYELALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFW 72
Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R++ ++TT RSD R +V + + D RRDFT+N
Sbjct: 73 DMGRKFGTLGAMRRREDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 132
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG NDL ++ + +D LR++R RF A G I+
Sbjct: 133 AMALRVPDLEFVDPFGGANDLVKGVLRTPVNPRQSFDDDPLRMMRAVRFVAQLGF-RIEP 191
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A + + I+S+ER+ E+ KLL + P I + + G+ +F ++ + L+
Sbjct: 192 ETAEALSDMVERIDIVSAERVRDELTKLLLSDRPRAGIEALVDSGLADIVFPEIPALQLE 251
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
+ + + VFE D LR L+ K
Sbjct: 252 -IDEHHRHKDVFEHTMIVVDRAVALETGPDGPVPAPDLTLRLAALMHDIGKPKTRRFEPG 310
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
K + + N +
Sbjct: 311 GKVSFHHHDAVGAKMTRKRLKALRFDHHMIEDVSELVNLHLRFHGYVEEPWTDSAVRRYV 370
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCF-------------ILQVLSDIIHWKKPLFPLTGDD 369
K + L + T Q+ ++ L + L GD+
Sbjct: 371 KDAGPLYERLNRLTRADATTQNRRKAMIFSSAMDEMEQRVRDLKKKEDFDAIRPDLNGDE 430
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSS 396
+++ GI PG VG H + +++
Sbjct: 431 IMQLLGIEPGPMVGRAYKHMLEYRLDNG 458
>gi|86132790|ref|ZP_01051382.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Dokdonia
donghaensis MED134]
gi|85816744|gb|EAQ37930.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Dokdonia
donghaensis MED134]
Length = 471
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 72/453 (15%), Positives = 162/453 (35%), Gaps = 56/453 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKT-- 66
++ I + + ++ ++GG VRD ++ V+DID+ ++ R S+
Sbjct: 7 LNNPIFNTISRAADDLQLETYVIGGFVRDYILKRGEVKDIDVVAVGSGIKLARKVSELLP 66
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +YGT + + + R + + VV D RRDFTINA
Sbjct: 67 NKPKVQVFKTYGTAMLRSNQIDVEFVGARKESYSKDSRNPVVEDGTLADDQNRRDFTINA 126
Query: 127 LYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L + +ID GG++DL + I+ D +D LR++R RF I
Sbjct: 127 LAIRLNDEGYGDLIDPFGGISDLDRKIIRTPLDPDITYSDDPLRMMRAIRFATQLDFM-I 185
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ + + + + +KI+++ERI E+NK++ + P + + G+ I ++
Sbjct: 186 ERKSVESITRNAERIKIITNERIVDELNKIMLSPVPSKGFLLLEKTGLLPYILPELVALK 245
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP--- 288
Q+ + + + + + LR+ L+ K +KK
Sbjct: 246 GIDEIEGQKHKDNFYHTLEVVDNISRHTDNLWLRWAALLHDIGKAPTKKFSKKVGWTFHG 305
Query: 289 --------------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ F+ + +S +
Sbjct: 306 HEFVGSKMVYKLFKRLKMPLNDKMKFVQKMVLMSSRPIVISEDHVTDSAVRRLIFDAGDY 365
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YG 374
++ + L ++T ++ + ++ H + P++G+++++ +
Sbjct: 366 IEDLMTLCEADITTKNPKRFRRYHNNFKVVREKMKEVEERDHIRNFQPPVSGEEIMETFN 425
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+ P +++G + K+ + +E
Sbjct: 426 LKPCREIGTLKEAIKEAILEGEIPNEKEAAVAF 458
>gi|213693333|ref|YP_002323919.1| metal dependent phosphohydrolase [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213524794|gb|ACJ53541.1| metal dependent phosphohydrolase [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320459515|dbj|BAJ70136.1| putative RNA nucleotidyltransferase [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 471
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 83/468 (17%), Positives = 159/468 (33%), Gaps = 67/468 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + L + + +VGG VRD L++ D+D ++ P++ I +
Sbjct: 7 PEAIELGRLFAEQGYELALVGGPVRDLLLHRRSHDLDFCSSARPEQFEPILRRWGHDGFW 66
Query: 72 PTSISYGTIKIICR-----KKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R + ++TT RSD R +V + + D RRDFT+N
Sbjct: 67 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 126
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG +DL ++ D +D LR++R RF A G I
Sbjct: 127 AMALRVPDLQFVDPFGGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGF-RIAP 185
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
D A + + I+S+ER+ E+ KLL + P + + G+ +F ++ + L
Sbjct: 186 DAAEAITSMRDRIDIVSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL- 244
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
Q+ + + VFE D LR ++ K
Sbjct: 245 QIDEHHRHKDVFEHTMIVLERAIALETGPDGPVPAPDLTLRLAAVMHDIGKPKTRRFEPG 304
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYL 319
K + + N + Y+
Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDISELVNMHLRFHGYVDEPWTDSAVRRYV 364
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
+ +L + Q + ++ + L G++
Sbjct: 365 KDAGHLYERLNRLTRADATTQNKRKAMIFSQAMDEMEERVRELKKKEDFDAIRPDLDGNE 424
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+++ G+ PG +G H + +++ + L++ A Q
Sbjct: 425 IMELLGLEPGPMIGRAYKHMLEYRLDNGPVDHDVAVEE-LKRWYAEIQ 471
>gi|126662057|ref|ZP_01733056.1| tRNA nucleotidyltransferase [Flavobacteria bacterium BAL38]
gi|126625436|gb|EAZ96125.1| tRNA nucleotidyltransferase [Flavobacteria bacterium BAL38]
Length = 471
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 78/454 (17%), Positives = 159/454 (35%), Gaps = 56/454 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKT-- 66
I + + ++GG VRD L+N +DIDI + S+
Sbjct: 7 LEHKIFKIISQAAQELNLECYVIGGFVRDILLNRDHKKDIDIVAVGSGIELALKVSQLIP 66
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + +YGT + + R + T +V K D RRDFTINA
Sbjct: 67 FHPKVQVFKNYGTAMLRYDDIDVEFVGARKESYTHDSRNPLVENGTLKDDQERRDFTINA 126
Query: 127 LYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L + D G+ DL+N+ IK + +D LR++R RF I
Sbjct: 127 LAFSLNAENFGNLVDPFNGVEDLKNKIIKTPLNPDITYSDDPLRMMRAIRFATQLNF-EI 185
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+S+ L A K K + I+S ERI E++K+L ++ P +H++ G+ + I ++ ++
Sbjct: 186 ESESLKAISKNKDRINIISGERIVDELHKILASEKPSIGFLHLFQTGLLEIILPELTALN 245
Query: 243 -----------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----AKKFSL 287
+ + + + D LR+ L+ K F
Sbjct: 246 NVEEVEGHTHKNNFYHTLEVVDNICPNTDDVWLRWSALLHDIGKAPTKRFNKKQGWTFHG 305
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI---------------- 331
+ ++ + + + + + ++ I
Sbjct: 306 HEFLGGKMVKKIFERLHMPLNHKMKFVQKMVMMSSRPIVLAEDIVTDSAVRRLVFDAGED 365
Query: 332 ---FLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY-G 374
+ L ++T ++ + ++ + P++G+++++ G
Sbjct: 366 VENLMTLCEADITTKNPKKFNKYHNNFKIVRTKIVEVEEKDRVRVFQPPISGEEIMELFG 425
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ PG+++G + K+ + E +
Sbjct: 426 LKPGREIGQLKEAVKEAILEGEIPNEYEAAKEFV 459
>gi|217034768|ref|ZP_03440166.1| hypothetical protein HP9810_861g10 [Helicobacter pylori 98-10]
gi|216942712|gb|EEC22273.1| hypothetical protein HP9810_861g10 [Helicobacter pylori 98-10]
Length = 407
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 76/403 (18%), Positives = 143/403 (35%), Gaps = 22/403 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + +L + + K + +VGG +RD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEKELQELFGIYEKSPHELYLVGGCMRDCLMGITPKDYDLTSNALVNESKELLLKHHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + F+ D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N ++N+ I+ +G+A R ED LRILR RF A G K +
Sbjct: 122 IAYSPTKGIIDPFKGQNAIKNQIIECVGEARLRFFEDALRILRALRFSATLGFKIV---- 177
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + ++ + + L
Sbjct: 178 ---------LSTKEAVFACKDLLKHLSKERLQSELNKFLMGKNAYEVAKEYQEILELVTQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + + LR + P++ + C+
Sbjct: 229 EKIENLGFLKNAPFNLELR------LLGFFKHQKSLENLRYPKKTCVLFLKAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ + +KK L
Sbjct: 283 NIHNKTELKFLLKNYDLEPFNLALDFYALKNPKHALKIKSLLKEISNANEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +++G IL C I S E L ++
Sbjct: 343 GSTLQNLGYQR-QQIGEILNACLNLVIAHPKNNSLEWLIKWVK 384
>gi|310288293|ref|YP_003939552.1| tRNA nucleotidyltransferase [Bifidobacterium bifidum S17]
gi|311065154|ref|YP_003971880.1| RNA nucleotidyltransferase [Bifidobacterium bifidum PRL2010]
gi|309252230|gb|ADO53978.1| tRNA nucleotidyltransferase [Bifidobacterium bifidum S17]
gi|310867474|gb|ADP36843.1| RNA nucleotidyltransferase [Bifidobacterium bifidum PRL2010]
Length = 475
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 89/461 (19%), Positives = 157/461 (34%), Gaps = 66/461 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + L + +VGG VRD L++ D+D T+ PD I
Sbjct: 12 PEAIELGHLFAARGYELALVGGPVRDLLLHRRSHDLDFCTSAHPDEFESILRHWGRDGFW 71
Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R++ +ITT RSD + R +V + + D RRDFT+N
Sbjct: 72 DMGRKFGTLGAMRRREDGTEVKVEITTYRSDTYDPESRKPEVSYGDSLEGDLSRRDFTVN 131
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ Q + +D GG +DL ++ D + +D LR++R RF A G +I
Sbjct: 132 AMALRVPQLEFVDPFGGASDLAKGVLRTPVDPYQSFDDDPLRMMRAVRFVAQLGF-SIAP 190
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
D A + I+S+ER+ E+ KLL + P + + G+ +F ++ + L+
Sbjct: 191 DTAAAISDMTDRIDIVSAERVRDELTKLLLSDRPRAGVEALVESGLADIVFPEIPALQLE 250
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
+ + + VFE D LR L K
Sbjct: 251 -IDEHHRHKDVFEHTMIVLDRAIALETGPEGPVPAPDLTLRLAALTHDIGKPKTRRFEPG 309
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
K + + N +
Sbjct: 310 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNLHLRFHGYVEEPWTDSAVRRYV 369
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCF-------------ILQVLSDIIHWKKPLFPLTGDD 369
K + L + T Q+ ++ L + + + G++
Sbjct: 370 KDAGPLYERLNRLTRADATTQNRRKAMVFSSAMDEMEQRVRDLKEKEDFDAIRPDIDGNE 429
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
++ GI PG +VG H + +++ + L R
Sbjct: 430 IMTILGIAPGPEVGRAYKHMLEYRLDNGPVDHDTAVAELKR 470
>gi|301063768|ref|ZP_07204272.1| putative tRNA adenylyltransferase [delta proteobacterium NaphS2]
gi|300442123|gb|EFK06384.1| putative tRNA adenylyltransferase [delta proteobacterium NaphS2]
Length = 437
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 88/436 (20%), Positives = 154/436 (35%), Gaps = 57/436 (13%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ ++ L +VGGAVRD + V D D+ T+ D ++ IF
Sbjct: 12 PVSFLIRKLEGANHLVYVVGGAVRDICLKRPVTDWDLCTSASVDALLEIFRNE--SRFSP 69
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+GT+ I+ ++ITT R +D +RD TINA+ D
Sbjct: 70 G--HGTMVIVMEGHSYEITTFRGAAK------------TLASDLSKRDLTINAMALDPST 115
Query: 134 -KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++ID G DL+NR ++ + + R ED LR+LR R A I A
Sbjct: 116 GEIIDPHHGRRDLQNRILRAVINPEDRFREDPLRLLRTVRLAAQLDF-AIHQKTKEAIPA 174
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ L ++ ERI E+ K+L P + G+ KE ++ E L + ++
Sbjct: 175 LARLLSGVARERIREELMKILMVPKPSKDFNTLITLGLLKEFLPELLEGRLKRQNRYHRF 234
Query: 253 -------EQVFEWKIDSLLRFIVLISWQDKKSI---------------------LSMAKK 284
E V K +LR L+ K + + K+
Sbjct: 235 TILKHVLETVDNVKATPVLRLTALLHDVAKPRVRVKEKGTWRFKGHEKASAKLGEKIMKR 294
Query: 285 FSLPREIRYFLISFFNCNFN--QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN---- 338
+++ + + + +++ G M L A
Sbjct: 295 LKFSKQMIAEVTHLIRSHLIGYNPRWTDAAVRRFIKRVGADHMENLLAFRRADILAHGIQ 354
Query: 339 ----NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWI 393
++ + I Q L+ ++ + G+D++ G+ PG VG IL +
Sbjct: 355 NGNQDILFELDQRIQQQLASSPPIQRSDLAIDGNDIMSVTGLSPGPAVGRILNQLNSIVL 414
Query: 394 NSSFQLSQEDLHHLLR 409
+E L +L+
Sbjct: 415 EHPQWNQKEKLMEILK 430
>gi|149370611|ref|ZP_01890300.1| tRNA nucleotidyltransferase [unidentified eubacterium SCB49]
gi|149356162|gb|EDM44719.1| tRNA nucleotidyltransferase [unidentified eubacterium SCB49]
Length = 474
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 79/456 (17%), Positives = 158/456 (34%), Gaps = 56/456 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKT-- 66
+ ++ + + ++GG VRD L++ +DIDI + + SK
Sbjct: 10 LSNPIFNSVSKAASNLNLDTYVIGGFVRDYLLDRGDAKDIDIVAVGSGITLAKEVSKLLP 69
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ SYGT + + R + ++ V + D RRDFTINA
Sbjct: 70 GKPNVSVFKSYGTAMLKSSNIELEFVGARKESYSENSRNPAVENGTLQDDQNRRDFTINA 129
Query: 127 LYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L D G+ DL N+ I+ D +D LR+LR RF I
Sbjct: 130 LALSLNEATYGDLLDPFNGVEDLHNKIIRTPLDPDITYSDDPLRMLRAIRFATQLDF-TI 188
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ + L A + + I+S ERI +EINK+L A P ++ G+ IF ++
Sbjct: 189 EKESLEAITRNADRITIISKERIVTEINKILNAPVPSKGFALLHKTGLLPHIFPELVALQ 248
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSL 287
Q+ + + + + + + LR+ L+ K F
Sbjct: 249 GIDEKEGQKHKDNFWHTLEVVDNIAQTTDNLWLRWAALLHDIGKAPTKRFHKKIGWTFHS 308
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AKL 329
+ ++ + + L + ++ +
Sbjct: 309 HEFVGSKMVYKLFKRLKMPLNDKMKFVQKMVLMSSRPIVLATEVTDSAVRRLVFDAGDYV 368
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGI 375
+ L ++T ++ + + +K P++G++++K + +
Sbjct: 369 DDLMTLCEADITTKNPKKFKKYHKNFEIVRKKIVEVEERDSIRNFQPPVSGEEIMKTFNL 428
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHL-LRK 410
P +++G I K+ + ++ + L+K
Sbjct: 429 KPSREIGQIKDAIKEAILEGEIANDYDEAYAFMLKK 464
>gi|193212873|ref|YP_001998826.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Chlorobaculum parvum NCIB 8327]
gi|193086350|gb|ACF11626.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Chlorobaculum parvum NCIB 8327]
Length = 475
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 81/463 (17%), Positives = 155/463 (33%), Gaps = 62/463 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR-IFSKTRYKVIPT 73
L I L ++ +VGG VRD +M DIDI P + I + +
Sbjct: 13 LYRIGDLADQAGLPCYLVGGYVRDLIMQRPCTDIDIMVIGEPVPFAKAIAEQLGGRNFVL 72
Query: 74 SISYGTIKIICRK-----KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ T +I +I R + + + D RRDFTINAL
Sbjct: 73 FERFRTAQIELDDPEAGTFKLEIVGARKESYNPESRKPITSIGTLEDDLSRRDFTINALA 132
Query: 129 ADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+++D G +R + +K D +D LR++R RF +D
Sbjct: 133 LRLNREQRGELVDLYDGQRHIREKLLKTPLDPEQTFSDDPLRMMRAARFACQLDF-RLDE 191
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
L A ++I+S ER+ E K++ A P + +++ G+ KEI ++ ++
Sbjct: 192 ATLEAMEAMSSRIQIVSRERVSHEFLKIMAAPKPSIGLKILHSTGLLKEIIPELDVMAGI 251
Query: 245 Q-----------LSQVIEAEQVFEWKIDSLLRFIVLISWQ-------------------- 273
+ + + E LR L
Sbjct: 252 EQVDGLGHKDTLFHTFQVVDNLAEHSDKLWLRVSALFHDIAKPVTKRFHLGSGWTFHGHE 311
Query: 274 --DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
K + + + P E ++ + LS EI L
Sbjct: 312 AVGVKLVRRIFRAMKWPMEPMEYVQKMVRLHHRPIPLSKDEITDSAVRRLMFDAGQDLDD 371
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGIPP 377
+ L ++T ++ + +++ + + + P++G D+++ +P
Sbjct: 372 LMTLCRADVTSKNPRKVQRIMKNFNNVEAKIAEVGEKDLLAKWRPPVSGTDIMEMLNLPQ 431
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLL----RKLIASSQ 416
GK VG I + I+ ++ + R+++ +
Sbjct: 432 GKLVGIIKSRMENAIIDGDIPYDRQAALDFVSAVYREMVEKRE 474
>gi|152999383|ref|YP_001365064.1| poly(A) polymerase [Shewanella baltica OS185]
gi|304411109|ref|ZP_07392725.1| poly(A) polymerase [Shewanella baltica OS183]
gi|307301768|ref|ZP_07581526.1| poly(A) polymerase [Shewanella baltica BA175]
gi|151364001|gb|ABS07001.1| poly(A) polymerase [Shewanella baltica OS185]
gi|304350644|gb|EFM15046.1| poly(A) polymerase [Shewanella baltica OS183]
gi|306913806|gb|EFN44227.1| poly(A) polymerase [Shewanella baltica BA175]
Length = 513
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 16/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK K+ +VGG VRD L+ + +D D+ T P+ + ++F R
Sbjct: 77 SENALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLFRNCRV--- 133
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R +GR + + D+ RRD
Sbjct: 134 -VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKVSKANAEGRLLRDNVYGEIDEDAERRD 192
Query: 122 FTINALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D I GG DL+ T++ IGD R ED +R+LR RF
Sbjct: 193 FTVNALYYDISDYSIRSYGGGMTDLKAGTLRLIGDPETRYREDPVRMLRAVRFATKLNM- 251
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
I++ + LK + + R++ E+ KL A L M +F +F V
Sbjct: 252 GIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLFAPLFPQVAA 311
Query: 241 I 241
+
Sbjct: 312 L 312
>gi|160874003|ref|YP_001553319.1| poly(A) polymerase [Shewanella baltica OS195]
gi|160859525|gb|ABX48059.1| poly(A) polymerase [Shewanella baltica OS195]
gi|315266232|gb|ADT93085.1| poly(A) polymerase [Shewanella baltica OS678]
Length = 513
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 16/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK K+ +VGG VRD L+ + +D D+ T P+ + ++F R
Sbjct: 77 SENALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLFRNCRV--- 133
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R +GR + + D+ RRD
Sbjct: 134 -VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKVSKANAEGRLLRDNVYGEIDEDAERRD 192
Query: 122 FTINALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D I GG DL+ T++ IGD R ED +R+LR RF
Sbjct: 193 FTVNALYYDISDYSIRSYGGGMADLKAGTLRLIGDPETRYREDPVRMLRAVRFATKLNM- 251
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
I++ + LK + + R++ E+ KL A L M +F +F V
Sbjct: 252 GIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLFAPLFPQVAA 311
Query: 241 I 241
+
Sbjct: 312 L 312
>gi|217972060|ref|YP_002356811.1| poly(A) polymerase [Shewanella baltica OS223]
gi|217497195|gb|ACK45388.1| poly(A) polymerase [Shewanella baltica OS223]
Length = 513
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 16/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK K+ +VGG VRD L+ + +D D+ T P+ + ++F R
Sbjct: 77 SENALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLFRNCRV--- 133
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R +GR + + D+ RRD
Sbjct: 134 -VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKVSKANAEGRLLRDNVYGEIDEDAERRD 192
Query: 122 FTINALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D I GG DL+ T++ IGD R ED +R+LR RF
Sbjct: 193 FTVNALYYDISDYSIRSYGGGMTDLKAGTLRLIGDPETRYREDPVRMLRAVRFATKLNM- 251
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
I++ + LK + + R++ E+ KL A L M +F +F V
Sbjct: 252 GIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLFAPLFPQVAA 311
Query: 241 I 241
+
Sbjct: 312 L 312
>gi|303326776|ref|ZP_07357218.1| polyA polymerase family protein [Desulfovibrio sp. 3_1_syn3]
gi|302862764|gb|EFL85696.1| polyA polymerase family protein [Desulfovibrio sp. 3_1_syn3]
Length = 895
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 72/422 (17%), Positives = 143/422 (33%), Gaps = 24/422 (5%)
Query: 14 DLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
++ +L L + K VGG VRD L++ QDID+ + + +
Sbjct: 464 EIRELLHLAGQLGRKLGLPVYAVGGFVRDLLLDRPNQDIDLVVEGNGIALAKALAAELNG 523
Query: 70 VIPTSISYGTIKIICRKKY-----FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ + T +I D+ T R + V K D RRDFTI
Sbjct: 524 RVREHQKFLTSVVIFHDSKGIESRIDVATARLEYYEYPAALPTVELSSIKMDLFRRDFTI 583
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHY-GEKN 181
NAL + + + + +ED R LR RF Y
Sbjct: 584 NALAVRLDSTPFGQLVDFFGGQRDIKERVIRVLHTLSFVEDPTRCLRAVRFEQRYKFRIG 643
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--- 238
++ L+ + + K + LS R+++E + + ++P + GI + I +
Sbjct: 644 PGAEKLIKNALSLKLMDRLSGARLFNEYQHICDEEDPPACFSRLDELGILQAIAPQLGLT 703
Query: 239 --QEISLDQLSQVIEAEQVF---EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
+ L +L +++ ++ L+ F+ L + + + LP+ +
Sbjct: 704 PNRRNLLHRLKEMLTWYRLLYFDGTAQAWLVYFLGLNLNMNYADTSAHYLRLGLPQVKKA 763
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK---IFLALHYNNLTHQDTCFILQ 350
++ + ++ + L L Y + +
Sbjct: 764 EILGQREQMRAVRGKLEAWQRQDDMGTAKVSALCALLRPIALECLLYIMASTDNPGLQKN 823
Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ I W++ + G ++ + G+ PG G IL ++ + L +L R+
Sbjct: 824 LSRYITQWRRERADIGGAELRRLGLAPGPLYGRILKAVLVAKLDGEAPNVESQL-NLARR 882
Query: 411 LI 412
L
Sbjct: 883 LA 884
>gi|197118675|ref|YP_002139102.1| adenosine-specific tRNA nucleotidyltransferase [Geobacter
bemidjiensis Bem]
gi|197088035|gb|ACH39306.1| adenosine-specific tRNA nucleotidyltransferase [Geobacter
bemidjiensis Bem]
Length = 875
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 69/419 (16%), Positives = 138/419 (32%), Gaps = 30/419 (7%)
Query: 18 ILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
IL L + D+ VGG VRD L+++ DID+ F+ + +
Sbjct: 462 ILHDLGRVGDQLDLTVYAVGGFVRDLLLDIQNMDIDVTVDGDGILFAETFASQFGCRVKS 521
Query: 74 SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GT I+ D+ + R + V K D RRDFT+N L
Sbjct: 522 HQKFGTAVIVFPDGFKIDVASTRLEYYVSPGALPTVERSSLKMDLYRRDFTVNTLAIALN 581
Query: 133 GKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G + + + +ED R+ R RF K +
Sbjct: 582 GDSFGKLIDYFGAYRDLQSRVIRVLHNLSFVEDPTRVFRAIRFEQRLNFKIAKHTEDLIK 641
Query: 191 IK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-----EISLD 244
+ L+ L R+ +E+ ++L K PL + M + G+ + I V+ +++L+
Sbjct: 642 NAVKMEFLEKLGGRRLLAELVQILREKEPLKGVGRMASLGLLRFIHPGVELTPAMQVALE 701
Query: 245 QLSQVIEAEQVFEWKID------SLLRFIVLISWQDKKSILSMAKKFSLPR----EIRYF 294
+ V+ + + L ++ + + + E+R
Sbjct: 702 ETRYVVSWFDLLYLERPYESWSVYFLTLCEGLTEEQFWGTCTRLAVAEHYKERLVEMRRQ 761
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ S Y + + L +A + + L
Sbjct: 762 SEELIGNLERKLARSEKVDNSEIYFTLRGLPVEVLLYHMAKSRSAEVKRCISLYFTKLDG 821
Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ + G+D+ + G+ PG +L +N ++++ L+R+++
Sbjct: 822 MH------PQIGGEDLKELGVEPGPLYRELLDLVLSARLNGKVASREDEI-QLVREVLE 873
>gi|317181954|dbj|BAJ59738.1| poly(A) polymerase [Helicobacter pylori F57]
Length = 407
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 77/403 (19%), Positives = 143/403 (35%), Gaps = 22/403 (5%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + +L + + K + +VGG +RD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEKELQELFGIYEKSPHELYLVGGCMRDCLMGITPKDYDLTSNALVNESKELLLKHHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + F+ D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ +ID G N ++N+ I+ +G+A R ED LRILR RF A G K +
Sbjct: 122 IAYSPTKGIIDPFKGQNAIKNQIIECVGEARLRFFEDALRILRALRFSATLGFKIV---- 177
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + + ++ + + L
Sbjct: 178 ---------LSTKEAVFACKDLLKHLSKERLQSELNKFLMGKNAYEVAKEYQEILELVTQ 228
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + + LR + P++ + C+
Sbjct: 229 EKIENLGFLKNAPFNLELR------LLGFFKHQKSLENLRYPKKTCVLFLKAKECHKAFL 282
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K D F AL + + ++ + +KK L
Sbjct: 283 NIHNKTELKFLLKNYDLEPFNLALDFYALKNPKRALKIKTLLKEISNANEPFKKEHLALK 342
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G + G +K+G IL C I S E L ++
Sbjct: 343 GSTLQNLGYQR-QKIGEILNACLNLVIAHPKNNSLEWLIKWVK 384
>gi|269958130|ref|YP_003327919.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Xylanimonas cellulosilytica DSM 15894]
gi|269306811|gb|ACZ32361.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Xylanimonas cellulosilytica DSM 15894]
Length = 500
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 82/477 (17%), Positives = 158/477 (33%), Gaps = 82/477 (17%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I + +L + +VGG VRD+ + + D+D AT+ PD+ + ++
Sbjct: 20 APAAIELGTLFQAAGHELALVGGPVRDAFLGRASNDLDFATSATPDQTQELLARWGDAHW 79
Query: 72 PTSISYGTIKIICRKKYF-------DITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
+GTI + ++TT R+D R V F D RRDFT
Sbjct: 80 DIGKEFGTIGARRFGRGEQAADVVVEVTTYRTDEYDPASRKPVVAFGDTLDGDLSRRDFT 139
Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ +D GL DL ++ +D LR++R RF A G +
Sbjct: 140 VNAMAVRLPDLTFVDPFDGLGDLARGVLRTPIAPERSFDDDPLRMMRAARFAAQLGF-TV 198
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
++ L A + ++I+S+ER+ +E++KLL A P + + + G+ + + ++ +
Sbjct: 199 EAGTLAAIVAMAGRIEIVSAERVQAELSKLLLADKPRRGLEVLVDTGLAEHVLPELPALR 258
Query: 243 LDQLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKKSILSM- 281
L+ + + + V++ D +LR L+ K +
Sbjct: 259 LE-IDEHHRHKDVYQHTLTVLEQAIAQETGPDGPVPGPDLVLRLASLLHDVGKPATRRFE 317
Query: 282 ---------------------AKKFSLPREIRYFLISFFNCNFNQKTL------------ 308
K +++ + +
Sbjct: 318 PGGGVSFHHHEVVGAKLVARRLKALKYEKQVVKDVARLVELHLRFHGYGDPSGGADGPGR 377
Query: 309 -----SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH------ 357
+ + Y+ ++ +L + + +D+
Sbjct: 378 SGGGAAWTDSAVRRYVTDAGPLLERLHRLTRADSTTRNRRKAQRLADAYTDLERRIDALR 437
Query: 358 ----WKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
L G ++ GIPP ++VG H + L E LR
Sbjct: 438 AQEEIDAIRPDLDGTQIMAILGIPPSREVGQAYQHLLALRMEHG-PLGPERAEAELR 493
>gi|260888975|ref|ZP_05900238.1| polyA polymerase [Leptotrichia hofstadii F0254]
gi|260861035|gb|EEX75535.1| polyA polymerase [Leptotrichia hofstadii F0254]
Length = 585
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 103/440 (23%), Positives = 170/440 (38%), Gaps = 48/440 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D D+ IL LN+ K +VGGAVRD ++N D D AT I + RIF+ Y
Sbjct: 6 DDDVKFILEQLNRNG-KGFLVGGAVRDKILNKDPGDYDFATDIEYSELKRIFA--GYNPK 62
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINALYA 129
+G + I K ++I R + + F + + D RRDFTIN++
Sbjct: 63 EMGAHFGILMINVNGKSYEIAKFRKETGVYNSRYPKEIKFVKTIEEDLARRDFTINSIAY 122
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+Q ++D GG D+R + I+F+G RI ED LRILR FRF + G N+D A
Sbjct: 123 SEQTGIVDLYGGRQDIRRKVIRFVGKPKLRIEEDALRILRAFRFISKLGF-NLDKKTAEA 181
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
K +K L +S ERI+ E++K+L K A + M + + I + +
Sbjct: 182 IYKKRKFLTKISKERIFDELSKILMGKFVKKAFIEMKKLRVLEMIIPEFYYAYNFDQNNP 241
Query: 250 IEAEQVFEW--------KIDSLLRFIVLISWQDKKSI----------------------L 279
+ +F D + RF L K ++
Sbjct: 242 DHPDDLFNHIIKVIHLCDYDLVTRFAALFHDLGKINVKIIDAKGIFYFYGHEKESALIAE 301
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLA---- 334
K+ + + + + +S +KKL +K + +F A
Sbjct: 302 EELKQLKASNDFINSVKKIVKNHMLIYQDVSDKTLKKLIIEMEEKNLKRLFNLFSADLNS 361
Query: 335 --LHYNNLTHQDTCFILQVLSDIIH-WKKPLF---PLTGDDVVKYGIPPGKKVGNILVHC 388
L Q + + +I K P F +TG D++ +++G +
Sbjct: 362 KGLRTKKENEQIIQNFWEKIENIKKQGKIPQFNDLDITGIDLINLKFSN-REIGEVKNRL 420
Query: 389 KQEWINSSFQLSQEDLHHLL 408
+ + + +E L +
Sbjct: 421 YELVLGDEIENEKEALLKYV 440
>gi|92115178|ref|YP_575106.1| poly(A) polymerase [Chromohalobacter salexigens DSM 3043]
gi|91798268|gb|ABE60407.1| poly(A) polymerase [Chromohalobacter salexigens DSM 3043]
Length = 473
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 62/243 (25%), Positives = 109/243 (44%), Gaps = 17/243 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + +L L+ ++ +VGG VRDSL+ +D DIAT P+ + +F +R
Sbjct: 47 LFSENALKVLYRLHNAGHEAYLVGGCVRDSLLGKVPKDFDIATDATPEEIRTLFRNSRI- 105
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS-----------DLITDGRYAKVVFTRDWKADSL 118
+ + + ++ ++TT R DG + + D+L
Sbjct: 106 ---IGRRFRIVHVRFGREIIEVTTFRGRPGDDHDDTLSQQSDDGLLLRDNVWGTIEEDAL 162
Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NALY + + D+ G++D+ RT++ IGD R ED +R+LR RF A
Sbjct: 163 RRDFTVNALYYNIADFSIHDWANGVSDIDERTLRLIGDPEVRYREDPVRMLRAVRFAAKL 222
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+I+ + L + R++ E+ KL + + L + G+F +F +
Sbjct: 223 DF-DIEPRTEAPIGELAPLLLQIPPARLFEEVLKLFLSGHALRTFELLREYGLFAMLFPE 281
Query: 238 VQE 240
E
Sbjct: 282 TDE 284
>gi|323341636|ref|ZP_08081869.1| tRNA adenylyltransferase [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322464061|gb|EFY09254.1| tRNA adenylyltransferase [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 443
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 98/440 (22%), Positives = 184/440 (41%), Gaps = 48/440 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ ++ L + +VGG VRD+LM DID+ T LP+++++I+ K +
Sbjct: 7 SKNIEIVMMELTNRGFEVFVVGGFVRDALMGHRSFDIDLCTNALPEQLLKIYKKYSIESN 66
Query: 72 PTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
YG IK + +++F+I+T+R D R ++V F DS RRDFT+NALY
Sbjct: 67 --GHDYG-IKFMSGEEHFEISTMRLEGDYEDGRRPSRVEFINHLFDDSKRRDFTVNALYY 123
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ +IDY G+ DL+N T++ IGD R ED LRI R +RF + G +ID++ L
Sbjct: 124 HPRHGLIDYYDGVKDLQNHTLRVIGDPKVRFKEDVLRIARLYRFKSELGF-DIDAETLYV 182
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ L+ L +I+ E+++ L L + +F ++E
Sbjct: 183 VQTQIESLQRLKLVQIYPELSRYLLGPYFLET--SLLCPEFLMTLFPPLKETLGFDQHNP 240
Query: 250 IEAEQVFEWKIDSL--------LRFIVLISWQDKKSILS--------------------- 280
++E I ++ L+ + L K ++ +
Sbjct: 241 FHEYSLYEHTIRTMQGIPNRVDLKLVALFHDLGKSNVQTVDDQGIAHYPGHAQASCIIAR 300
Query: 281 -MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ + +L + + ++++L ++G + + + + A +
Sbjct: 301 PFFEALQFSIKKIAYLEKLILEHDLKLQPVSAQLQQLIRVHGIEWVEDLMAVKRADNLAK 360
Query: 340 LTHQDTCF-----ILQVLSDIIHWKKP----LFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390
+ I Q++ +I K+P +T D+ K GI GK + L C
Sbjct: 361 GSRAQYQLQRCTHISQIIQEIRDQKRPTSIRDLVITASDLKKLGI-EGKTINKYLNMCLD 419
Query: 391 EWINSSFQLSQEDLHHLLRK 410
I + + E L + +++
Sbjct: 420 RVIEGTLPNTHESLLNCIKE 439
>gi|194334118|ref|YP_002015978.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Prosthecochloris aestuarii DSM 271]
gi|194311936|gb|ACF46331.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Prosthecochloris aestuarii DSM 271]
Length = 489
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 81/459 (17%), Positives = 163/459 (35%), Gaps = 58/459 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPT 73
L I + ++ + +VGG +RD L+ QDIDI P R K + +
Sbjct: 21 LYRIGDIADQQNIECYLVGGYIRDVLLERPSQDIDIMIIGDPIAFAREVQKQLKGRNFVV 80
Query: 74 SISYGTIKIICRK-----KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ T ++ +I R + + + D RRDFT+NAL
Sbjct: 81 FERFRTARLELDDAVEGPVLLEIVGARKESYNPDSRKPITEIGSLEDDLSRRDFTVNALA 140
Query: 129 ADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ +++D GG+ L + +K + +D LR++R RF + E ++
Sbjct: 141 LELNALNRNRIVDLYGGIEALHSGILKTPLEPEKTFSDDPLRMMRAARFSSQL-EFSLTD 199
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ L A + I+S ER+ E K++++ P + ++ G+ KEIF ++ ++
Sbjct: 200 ETLDAIKAMHTRISIVSRERVSHEFLKIMQSPKPSIGLKILFETGLLKEIFPELTAMAGI 259
Query: 245 Q-----------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK--------- 284
+ L +++ E LR L+ K ++
Sbjct: 260 EQVDGLGHKDTLLHTFQVVDKLAEKSDHLWLRVAALLHDIAKPLTKRFSRHTGWTFHGHE 319
Query: 285 -------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
P E ++ + LS EI +L
Sbjct: 320 VVGTRLAAKIFRSMRWPLEPLEYVQKMIRLHHRPIPLSKEEISDSAVRRLMFEAGEELND 379
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGIPP 377
+ L ++T ++ + Q++ + ++ P+ G ++++ G+
Sbjct: 380 LMTLCRADVTSKNPRKVRQIMQNFNRVEEKIDEVAEKDLLAKWRPPVNGIEIMEILGLNE 439
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G+ VG I + I+ ++ +RK+ Q
Sbjct: 440 GRMVGVIKKKMESAIIDGEIPYDRDAALAYIRKVWDEMQ 478
>gi|225010662|ref|ZP_03701132.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Flavobacteria bacterium MS024-3C]
gi|225005215|gb|EEG43167.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Flavobacteria bacterium MS024-3C]
Length = 475
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 77/449 (17%), Positives = 147/449 (32%), Gaps = 56/449 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKT-- 66
+ ++ ++GG VRD L+ S +DID+ + + S+
Sbjct: 10 LTHPIFNTLSDCAEALGCEAYVIGGFVRDYLLERGSPKDIDVVVLGSGISLAKKLSEALP 69
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +YGT + + + R + T VV + D RRDFTINA
Sbjct: 70 NSPEVTVFKNYGTAMLKYQDLVLEFVGARKESYTHDSRNPVVENGSLEDDQNRRDFTINA 129
Query: 127 LYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L D GL+ L+N+ I +D LR+LR RF + I
Sbjct: 130 LAIGLNKDNYGVLVDPFNGLDALKNKRIVTPLSPGITFSDDPLRMLRAIRFASQLNF-TI 188
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
D++ L A + + I+S ERI EINK++ + P+ M+ G+ I ++
Sbjct: 189 DAEALEAITVQRDRISIISKERIVDEINKMMSSPMPILGFELMHKTGLLPLILPELSALE 248
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSL 287
Q+ + + + + + + LR+ L+ K F
Sbjct: 249 GIEEVEGQKHKDNFWHTLEVVDNISKNTENVWLRWAALLHDIGKAPTKRFDKKIGWTFHG 308
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
I ++ + + + L + ++ L
Sbjct: 309 HEFIGSKMVYKLFKRLHMPLNDKMKYVQKMVLMSSRPIVLAEDFVTDAAVRRLVFDAGEH 368
Query: 348 ILQVL--------------------------------SDIIHWKKPLFPLTGDDVVK-YG 374
+ ++ H + P++G++++ +G
Sbjct: 369 VEDLMTLCEADITTKNPYKKKKYKNNFKIVRQKIEEVEARDHVRNFQPPVSGEEIMNTFG 428
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQED 403
+ P K++G I K+ + E
Sbjct: 429 LKPSKEIGVIKEAIKEAILEGEIPNEYEA 457
>gi|15595051|ref|NP_212840.1| polynucleotide adenylyltransferase (papS) [Borrelia burgdorferi
B31]
gi|2688624|gb|AAC67039.1| polynucleotide adenylyltransferase (papS) [Borrelia burgdorferi
B31]
Length = 410
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 93/395 (23%), Positives = 156/395 (39%), Gaps = 18/395 (4%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II
Sbjct: 20 NNYEFYLVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75
Query: 85 RKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141
KK F+ITT R + + A +T++ D RRDFTINA+ D +ID G
Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLLKDLERRDFTINAIAMDIFNFNIIDCYNG 135
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
DL + I+ IG+ + R+ ED LRILR RF + + + K + L I
Sbjct: 136 KKDLNKKIIRCIGNPNKRLEEDALRILRAARFSSTLNFNIEKNTLISMKYKKENILMISK 195
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+KLLE N I ++ FK +L+ ++VI+ + +
Sbjct: 196 ERIKNE-FHKLLEGINIQKGIYYLKKVDFFKNF------FNLEIKTKVIKKIALLDKNKF 248
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L +L + K + + ++ + N ++ ++ + YL
Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRGIIDNNNIFNVKKLSDIRYLLS 308
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPP 377
+I ++ FI++ + K P + G D+
Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K +G IL + I + ++ L ++ L
Sbjct: 369 NKNIGKILNMLLRCVIENPKLNTKNYLIKKIKTLK 403
>gi|220931559|ref|YP_002508467.1| CBS domain containing protein [Halothermothrix orenii H 168]
gi|219992869|gb|ACL69472.1| CBS domain containing protein [Halothermothrix orenii H 168]
Length = 865
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 77/404 (19%), Positives = 135/404 (33%), Gaps = 14/404 (3%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
I +K + + +VGG VRD ++ L D+D +R S+T + + +
Sbjct: 468 IRREADKHDVRVYLVGGMVRDLILGLENNDLDFMVEGNIKYYLRALSRTFEENYTYNDKF 527
Query: 78 GTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136
T +I D RS++ T V T + D RRDFT+NAL +
Sbjct: 528 KTGRIRLNSGYNLDFAVARSEVYTSPGALPEVETGEIVEDLFRRDFTVNALAIGVDSQNW 587
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRIL--EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
+ + HR +D RI+R R G D L+ K
Sbjct: 588 GTLIDFFGGIHDIEHKKLRVLHRFSFLDDPTRIIRGLRLALRLGFSFQDKTNLLMKEALK 647
Query: 195 KG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF--LDVQEISLDQLSQVIE 251
G K +S RI E + L K + IF + V E + +
Sbjct: 648 FGNFKRISKPRIIKEFSLLFSKKMDRRITGLLKQFPIFHLLDLDPRVDESKFSIIKRAEC 707
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
F K ++ +++ + + L R R L + L
Sbjct: 708 ILDYFRQKNYNIKEWLIRMVVLLDGVEEKKLANWGLNRGEREILTFPSVIDTIIDKLRTN 767
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + ++ + L QV I + K + G D++
Sbjct: 768 STPLKLKKLLEGFTLEQILLLLIYTEG-------KERKQVYKYINYLSKVDLKINGHDLI 820
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ G+ PG + +L + +++ + +E+L RK+I
Sbjct: 821 ELGLKPGPVIKEVLDKVWEAKVDNGLKTREEEL-RFARKIIGDK 863
>gi|317126719|ref|YP_004100831.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Intrasporangium calvum DSM 43043]
gi|315590807|gb|ADU50104.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Intrasporangium calvum DSM 43043]
Length = 527
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 80/463 (17%), Positives = 147/463 (31%), Gaps = 67/463 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L + + +VGG VRD+ + D+D T D ++
Sbjct: 66 PLLQELGQRFADRGHELALVGGPVRDAFLGRISPDLDFTTNASTDAILAAVVGWADAHWD 125
Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130
+GTI + + +IT+ R+D R +V+F + D +RRDFT+NA+
Sbjct: 126 IGREFGTIGLRKGDHHIEITSYRADTYDRTSRRPEVMFGDTLEGDLVRRDFTVNAMAIRL 185
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +D GL DL R + +D LR++R RF + G + +
Sbjct: 186 PSLEFVDVHDGLADLAARRLMTPAPPEESFADDPLRMMRAARFASQLGFEVAVEVRAAMT 245
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------ 238
+A I+S+ERI E KLL + P + + + G+ E ++
Sbjct: 246 ERAGTL-AIISAERIRDEFTKLLLSPAPRPGLTLLVDTGLADEFLPELPALRLEVDEHHR 304
Query: 239 ----QEISLDQLSQVIEAEQVFEWK------IDSLLRFIVLISWQDKKSILSM------- 281
E SL L Q I+ E D +LR L+ K +
Sbjct: 305 HKDVYEHSLTVLEQAIDLEGPPGAPEDQVPGPDLVLRLASLLHDIGKPATRRFEPGGGVS 364
Query: 282 ---------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDK 323
K ++ + + + Y+
Sbjct: 365 FHHHELVGARMAARRLKAMRYDKDTLKAVARLVELHLRFHGYGEGQWTDSAVRRYVTDAG 424
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDDVVK- 372
++ +L + + + D+ + L L G+++
Sbjct: 425 PLLPRLHRLTRSDSTTRNVRKAERLSRAYDDLERRIERLAEEEELAAIRPELNGNEIAAA 484
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQED-----LHHLLRK 410
I PG +G ++ + ++ L R+
Sbjct: 485 LAIKPGPVLGEAYQFLLGVRLDEGL-IGKDAAREKLLEWWARR 526
>gi|224283939|ref|ZP_03647261.1| metal dependent phosphohydrolase [Bifidobacterium bifidum NCIMB
41171]
gi|313141091|ref|ZP_07803284.1| tRNA nucleotidyltransferase/poly(A) polymerase [Bifidobacterium
bifidum NCIMB 41171]
gi|313133601|gb|EFR51218.1| tRNA nucleotidyltransferase/poly(A) polymerase [Bifidobacterium
bifidum NCIMB 41171]
Length = 470
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 89/461 (19%), Positives = 157/461 (34%), Gaps = 66/461 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + L + +VGG VRD L++ D+D T+ PD I
Sbjct: 7 PEAIELGHLFAARGYELALVGGPVRDLLLHRRSHDLDFCTSAHPDEFEPILRHWGRDGFW 66
Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R++ +ITT RSD + R +V + + D RRDFT+N
Sbjct: 67 DMGRKFGTLGAMRRREDGTEVKVEITTYRSDTYDPESRKPEVSYGDSLEGDLSRRDFTVN 126
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ Q + +D GG +DL ++ D + +D LR++R RF A G +I
Sbjct: 127 AMALRVPQLEFVDPFGGASDLAKGVLRTPVDPYQSFDDDPLRMMRAVRFVAQLGF-SIAP 185
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
D A + I+S+ER+ E+ KLL + P + + G+ +F ++ + L+
Sbjct: 186 DTAAAISDMTDRIDIVSAERVRDELTKLLLSDRPRAGVEALVESGLADIVFPEIPALQLE 245
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
+ + + VFE D LR L K
Sbjct: 246 -IDEHHRHKDVFEHTMIVLDRAIALETGPEGPVPAPDLTLRLAALTHDIGKPKTRRFEPG 304
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
K + + N +
Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNLHLRFHGYVEEPWTDSAVRRYV 364
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCF-------------ILQVLSDIIHWKKPLFPLTGDD 369
K + L + T Q+ ++ L + + + G++
Sbjct: 365 KDAGPLYERLNRLTRADATTQNRRKAMVFSSAMDEMEQRVRDLKEKEDFDAIRPDIDGNE 424
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
++ GI PG +VG H + +++ + L R
Sbjct: 425 IMTILGIAPGPEVGRAYKHMLEYRLDNGPVDHDTAVAELKR 465
>gi|294784658|ref|ZP_06749947.1| poly(A) polymerase [Fusobacterium sp. 3_1_27]
gi|294487874|gb|EFG35233.1| poly(A) polymerase [Fusobacterium sp. 3_1_27]
Length = 451
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 100/439 (22%), Positives = 181/439 (41%), Gaps = 49/439 (11%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I IL+ LNK K IVGGA+RD L+ L +D+D T + + +FS+ K T
Sbjct: 14 IEILNKLNKYG-KGYIVGGAIRDILLGLKPKDVDFTTNLPYGTLKTLFSEYTPK--ETGK 70
Query: 76 SYGTIKIICRKKYFDITTLRSDLIT-------DGRYAKVVFTRDWKADSLRRDFTINALY 128
S+G ++I ++I R D KV F D + D RRDFTINA+
Sbjct: 71 SFGVLRIRINNIDYEIAKFRKDNYEEKDGLKIIPEEKKVSFVDDIRNDLARRDFTINAMA 130
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+Q+ +ID G D+ NR I F+G A RI+ED LR+LR FRF + + ++ + +
Sbjct: 131 YNQKEGIIDLYNGQKDIENRIINFVGKAEERIIEDPLRVLRAFRFMSRL-KFSLSENTVE 189
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A K K+ LK +S ERI E +KLL +N N + M + G+ + I + +
Sbjct: 190 AIKKQKELLKNISEERITMEFSKLLLGENIKNTLTLMKDTGVLELIISEFKATYDFNQYN 249
Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQ----------------------DKKSI 278
+F D LR+ L+
Sbjct: 250 PHHNLDLFNHIINVVSRVPADLELRYSALLHDIAKPIVQTFDEEGIAHYKTHEIVGADMA 309
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ + LP ++ ++ + + ++ + KL G + ++ +A +
Sbjct: 310 RDILTRMKLPVKLIDTVVEIIKKHMVLYRDVTDKKFNKLLSEMGYGNLWRLIEHCIADNE 369
Query: 338 NNLTHQDT------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
+ + + + + + + G D+++ G ++G I +
Sbjct: 370 SKNNEVVSTENDLHERLKRAVEKQMQVTVNDLAVNGKDLIELDFT-GTEIGKIKKELLDK 428
Query: 392 WINSSFQLSQEDLHHLLRK 410
+++ Q +E++ + +++
Sbjct: 429 YLSEEIQNEKEEMLNYVKE 447
>gi|163752814|ref|ZP_02159938.1| tRNA nucleotidyltransferase [Kordia algicida OT-1]
gi|161326546|gb|EDP97871.1| tRNA nucleotidyltransferase [Kordia algicida OT-1]
Length = 474
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 76/451 (16%), Positives = 154/451 (34%), Gaps = 60/451 (13%)
Query: 16 INILSLLNKGEDKS----CIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKT--RY 68
++I S ++K + ++GG VRD L+ +DID+ + + +
Sbjct: 9 LDIFSTISKAATELQLETYVIGGFVRDFLLKRGDAKDIDVVAVGSGIELAKKVASLLPNK 68
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ +YGT + ++ + R + G V + D RRDF+INA+
Sbjct: 69 PKVQVFKNYGTAMVKTKEIEVEFVGARKESYERGSRNPAVENGTLQDDQNRRDFSINAMA 128
Query: 129 ADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
K D GGL DL+N+ I D +D LR++R RF ID
Sbjct: 129 LSLNEKTFGDLLDPFGGLEDLKNKRIVTPLDPDITYSDDPLRMMRAIRFATQLDF-KIDP 187
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------ 238
L A + +KI+S ERI E+NK+L + P + + + I ++
Sbjct: 188 VSLEAITRNSDRIKIISKERIVVELNKILMSNKPSIGFILLEKTKLLPYILPELSALKGI 247
Query: 239 -----QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS------------- 280
Q+ + + + + + LR+ L+ K
Sbjct: 248 DEIEGQKHKDNFYHTLEVVDNICPHTDNVWLRWAALLHDIGKAPTKRFSKKVGWTFHGHE 307
Query: 281 ----------MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330
+ E ++ + LS + ++
Sbjct: 308 FVGGKMVHKLFKRLHMPLNEKVKYVQKLVMMSSRPIVLSQDGVTDSAVRRLVFDASDHVE 367
Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGIP 376
+ L ++T ++ + ++ ++ P++G+++++ + +
Sbjct: 368 DLMTLCEADITTKNPRKFERYHNNFKIVREKIVEVEERDQVRNFQPPVSGEEIMETFNLK 427
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
P +++G I K+ + E H
Sbjct: 428 PSREIGIIKDAIKEAILEGEIPNEYEAAHAY 458
>gi|227547075|ref|ZP_03977124.1| possible tRNA adenylyltransferase [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|227212492|gb|EEI80381.1| possible tRNA adenylyltransferase [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 471
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 81/460 (17%), Positives = 155/460 (33%), Gaps = 66/460 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + L + + +VGG VRD L++ D+D ++ P++ I +
Sbjct: 7 PEAIELGRLFAEQGYELALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFW 66
Query: 72 PTSISYGTIKIICR-----KKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R + ++TT RSD R +V + + D RRDFT+N
Sbjct: 67 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 126
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG +DL ++ D +D LR++R RF A G I
Sbjct: 127 AMALRVPDLQFVDPFGGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGF-RIAP 185
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
D A + + I+S+ER+ E+ KLL + P + + G+ +F ++ + L
Sbjct: 186 DAAEAITSMRDRIDIVSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL- 244
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
Q+ + + VFE D LR ++ K
Sbjct: 245 QIDEHHRHKDVFEHTMIVLERAIALETGPDGPVPAPDLTLRLAAVMHDIGKPKTRRFESG 304
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYL 319
K + + N + Y+
Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNMHLRFHGYVDEPWTDSAVRRYV 364
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
+ +L + Q + ++ + L G++
Sbjct: 365 KDAGHLYERLNRLTRADATTQNKRKAMIFSQAMDEMEERVRELKKKEDFDAIRPDLDGNE 424
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+++ G+ PG +G H + +++ + L
Sbjct: 425 IMELLGLEPGPMIGRAYKHMLEYRLDNGPVDHDVAVEELK 464
>gi|213962517|ref|ZP_03390779.1| tRNA nucleotidyltransferase [Capnocytophaga sputigena Capno]
gi|213954843|gb|EEB66163.1| tRNA nucleotidyltransferase [Capnocytophaga sputigena Capno]
Length = 469
Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats.
Identities = 79/459 (17%), Positives = 154/459 (33%), Gaps = 64/459 (13%)
Query: 17 NILSLLNKGEDKS----CIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKT--RYK 69
I L++ + ++GG VRD L+ +DIDI + + ++
Sbjct: 10 PIFELISNISAEIPLESYVIGGFVRDYLLKKKLPKDIDIVSIGSGISLAEKVAEQLPNNP 69
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ ++GT I + R + V + + D RRDFTINA+
Sbjct: 70 KVSIFKNFGTAMIKADGLDIEFVGARRESYESNSRKPYVESGTLQDDQNRRDFTINAMAF 129
Query: 130 DQQGKV----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
ID GL DL + I+ + +D LR++R RF I+
Sbjct: 130 SLNKDTFGDLIDPFDGLGDLERKLIRTPLNPDITYSDDPLRMMRAIRFATQLNF-EIEEQ 188
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
L A K+ LKI+S+ERI E+NK+L + P + +Y G+ I ++
Sbjct: 189 SLKAITDNKERLKIISNERIVEELNKILASPKPSIGLKLLYETGLLHYILPELIALQGVQ 248
Query: 239 ----QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSLPRE 290
Q + + + + E + LR+ L+ K F
Sbjct: 249 EQDGQRHKDNFWHTLEVVDNISEHTDNLWLRWAALLHDIGKAPTKRFDKKIGWTFHGHEF 308
Query: 291 IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI-------------------AKLKI 331
+ ++ + + + +I + +
Sbjct: 309 VGSKMVYHLFKRLRMPLNDKMKYVQKIVKMSSRPIIIAEDIVTDSAVRRLVFDAGEEFED 368
Query: 332 FLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPP 377
+ L ++T ++ + + H + P++G++++K + +PP
Sbjct: 369 LMTLCEADITTKNPKKFKKYHDNFQIVRQKVVEVEEKDHIRNFQPPVSGEEIMKTFNLPP 428
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLH----HLLRKLI 412
+ VG + K+ + E +K+
Sbjct: 429 SRPVGVLKEAIKEAILEGKIPNEYEAAKTFMMEKAKKMK 467
>gi|114585225|ref|XP_526118.2| PREDICTED: tRNA nucleotidyl transferase, CCA-adding, 1 isoform 4
[Pan troglodytes]
Length = 346
Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats.
Identities = 99/355 (27%), Positives = 175/355 (49%), Gaps = 13/355 (3%)
Query: 59 VMRIFSKTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
+ +F ++I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+
Sbjct: 1 MKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDA 60
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH- 176
RRD TIN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+
Sbjct: 61 ERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRI 120
Query: 177 -YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ D + L A + KGL +S ERIW E+ K+L + +N ++H+
Sbjct: 121 VDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNH-VNHLIHLIYDLDVAPYI 179
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
SL++ +V + F K +LL + + + + + + +E +
Sbjct: 180 GLPANASLEEFDKVSKNVDGFSPKPMTLLASLFKVQDD----VTKLDLRLKIAKEEKNLG 235
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
+ + + + Y D ++ ++ L +Q + L ++
Sbjct: 236 LFIVKN--RKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCL---LKEM 290
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
W P FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K
Sbjct: 291 QQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 345
>gi|126175689|ref|YP_001051838.1| poly(A) polymerase [Shewanella baltica OS155]
gi|125998894|gb|ABN62969.1| poly(A) polymerase [Shewanella baltica OS155]
Length = 450
Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats.
Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 16/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK K+ +VGG VRD L+ + +D D+ T P+ + ++F R
Sbjct: 14 SENALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLFRNCRV--- 70
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R +GR + + D+ RRD
Sbjct: 71 -VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKVSKANAEGRLLRDNVYGEIDEDAERRD 129
Query: 122 FTINALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D I GG DL+ T++ IGD R ED +R+LR RF
Sbjct: 130 FTVNALYYDISDYSIRSYGGGMTDLKAGTLRLIGDPETRYREDPVRMLRAVRFATKLNM- 188
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
I++ + LK + + R++ E+ KL A L M +F +F V
Sbjct: 189 GIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLFAPLFPQVAA 248
Query: 241 I 241
+
Sbjct: 249 L 249
>gi|257070277|ref|YP_003156532.1| tRNA adenylyltransferase [Brachybacterium faecium DSM 4810]
gi|256561095|gb|ACU86942.1| tRNA adenylyltransferase [Brachybacterium faecium DSM 4810]
Length = 471
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 73/457 (15%), Positives = 153/457 (33%), Gaps = 64/457 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT--RYKV 70
++ + L + +VGG VRD+++ S D+D T+ P++ I + +
Sbjct: 7 PEIHELGRLFAAAGHELALVGGPVRDAVLGRSSADLDFTTSARPEQTETILREWTHDGAI 66
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+GT+ + +ITT R++ R +V + D RRDFT+NA+
Sbjct: 67 WDMGRDFGTLGGVRDGVKVEITTYRTESYDPSSRKPQVEYGDTLVGDLSRRDFTVNAMAV 126
Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ +D GL DL ++ +D LR++R RF A G I+
Sbjct: 127 RLPSLEFVDPFDGLGDLARTLLRTPVAPGQSFSDDPLRMMRAVRFVAQLGF-RIEDATAD 185
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A + + + I+S+ER+ E+ KL+ +P + M G+ + ++ + L+ + +
Sbjct: 186 AVEELAERITIVSAERVREELVKLMLGAHPRGGLELMTELGLAAHVLPELPALQLE-IDE 244
Query: 249 VIEAEQVFEWK----------------------IDSLLRFIVLISWQDKKSILSM----- 281
+ V++ D +LR L+ K +
Sbjct: 245 HHHHKDVYQHTLTVLDQAIDLESPAGSGGPCEGPDLVLRLAALMHDVGKPATRRFEEGGV 304
Query: 282 -----------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYG 321
K + ++ + + Y+
Sbjct: 305 VTFRFHETVGAKMTTRRMKALTFDKDTTKKVARLVELHLRFHGYVDSPWTDSAVRRYVTD 364
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK----------KPLFPLTGDDVV 371
++ L + + + ++ + L G+ ++
Sbjct: 365 AGDLLQHLHRLTRADVTTRNRRKARTLARAYDELEARIDHLAEQEEIGRIRPDLDGNRIM 424
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+ +PPG+ VG H + + + + L
Sbjct: 425 EVLDLPPGRTVGEAYKHLLELRMEHGPLGEERAIEEL 461
>gi|21325858|dbj|BAC00479.1| tRNA nucleotidyltransferase/poly(A) polymerase [Corynebacterium
glutamicum ATCC 13032]
Length = 440
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 82/432 (18%), Positives = 153/432 (35%), Gaps = 56/432 (12%)
Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91
VGG+VRD+ + D+D T+ P+ I V T I++GT+ + +I
Sbjct: 2 VGGSVRDAFLGELGHDLDFTTSARPEETKAILDDYADVVWDTGIAFGTLSAEKHGQQIEI 61
Query: 92 TTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----KVIDYVGGLNDLR 146
TT RSD + R +V F + D +RRDF +NA+ + Q D VGGL DL
Sbjct: 62 TTFRSDLYDGNSRNPEVTFGDTLEGDLIRRDFKVNAMAVEIQADGELTFHDPVGGLEDLL 121
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
T+ +D LR+LR RF + + + A + + + ++ ER+
Sbjct: 122 THTLDTPATPEQSFNDDPLRMLRAARFVSQLNF-TLAPRVITAMTEMAQQITRITVERMQ 180
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE------------- 253
E++K++ KNP I M GI + I+ ++ + + Q + +
Sbjct: 181 VELDKMILGKNPEAGIDLMVESGIAQIIYPEIPAMQMTQDEHMQHKDVYAHSLQVMRQAI 240
Query: 254 QVFEWKIDSLLRFIVLISWQDKKS----------------------ILSMAKKFSLPREI 291
E D +LR+ L+ K + +K +++
Sbjct: 241 DQEEDGPDLVLRWAALLHDCGKPDTRDFNEEGRVSFHQHEVVGAKLVRRRMRKLKYSKQM 300
Query: 292 RYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
+ + S + Y ++ +L + + +
Sbjct: 301 VGDVGQLVFLHMRFHGFSEGQWTDSAVRRYAADAGELLPRLHKLVRADCTTRNKRKAARL 360
Query: 349 LQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSF 397
+ + L G+++++ I G +VG K+ +
Sbjct: 361 QATYDHLEERIAEIAAKEDLARVRPDLDGNEIMEILNIQAGPEVGKAWAFLKELRLERG- 419
Query: 398 QLSQEDLHHLLR 409
L +E L+
Sbjct: 420 PLDREVAIAELK 431
>gi|317133125|ref|YP_004092439.1| Polynucleotide adenylyltransferase region [Ethanoligenens
harbinense YUAN-3]
gi|315471104|gb|ADU27708.1| Polynucleotide adenylyltransferase region [Ethanoligenens
harbinense YUAN-3]
Length = 396
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 87/399 (21%), Positives = 151/399 (37%), Gaps = 19/399 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +L++ + ++ +VGG VRD L+ + DIDIAT PD+V +F+KT
Sbjct: 6 SDGVREMLAVFGRAGIEAWLVGGCVRDGLLGRTPNDIDIATAATPDQVQALFAKTA---- 61
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDWKADSLRRDFTINALYA 129
PT + YGT+ + C ++TT RS+ T R+ VF + D RRDFTINA+
Sbjct: 62 PTGVQYGTVTVFCGGAQAEVTTFRSESGTRDTRHPARVVFGASLRDDLARRDFTINAMAW 121
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ + D GG DL+ ++ +G+ R ED LR+LR +RF A G ++ A
Sbjct: 122 YPERGLYDPFGGEADLKAGLVRAVGEPCLRFAEDALRVLRAYRFAAQLGF-TVEPRTRAA 180
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+++A LS ER+ E KLL + P+ A + G +
Sbjct: 181 AVEAMPLAAALSGERVREEWEKLLCSPCPVLAFLPELAGVWCAVGLP----------VKP 230
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ + + + + + + + +
Sbjct: 231 MRPPAGLADVPARAAQRWAAFVFLSRVDTGRLFARLHFANRLADEVRALVGVLSGAPLAD 290
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
P +K + ++ + L T + +L ++ L G +
Sbjct: 291 APTLKAVLERV-PPGVLDDGLLLRGLLLGERTEAARVLLAGILERGEPYRVEHLTLRGGE 349
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ + G G G Q +Q+ L L
Sbjct: 350 LAELGF-SGTACGQAQRALLHYVRFHPEQNTQDRLRAYL 387
>gi|261406081|ref|YP_003242322.1| polunucleotide adenylyltransferase region [Paenibacillus sp.
Y412MC10]
gi|261282544|gb|ACX64515.1| Polynucleotide adenylyltransferase region [Paenibacillus sp.
Y412MC10]
Length = 432
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 94/367 (25%), Positives = 159/367 (43%), Gaps = 17/367 (4%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
++ L + ++ VGG VRD M V D+DI T+ LP+ +F KVIPT I +
Sbjct: 24 VIRTLLRHGHEAYWVGGCVRDEYMGRRVSDMDITTSALPEVTCSVFP----KVIPTGIKH 79
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYADQQGKV 135
GT+ ++ + F++TT R + + F + K D RRDFT+NA+ G
Sbjct: 80 GTVTVLMEGQSFEVTTYRVESGYEDHRHPTEVAFVGEVKEDLRRRDFTMNAMARGIDGSW 139
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
+D GG D+ + I+ +G+A R ED LR++R RF + +G +I + +
Sbjct: 140 VDPFGGREDIDRKVIRCVGEARLRFREDALRMVRCIRFASVFGF-SIALRTWRGILSERD 198
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ--LSQVIEAE 253
L ++ ERI SE K+L +PL + G+ + + D+ + + E
Sbjct: 199 TLGWIAMERIRSEFEKILAGPSPLRGLEMFVRSGLHSRMKAPFPYTTHDRKTIEAMERIE 258
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313
SLL + Q + +L + RE L+S Q E
Sbjct: 259 PDHATIRWSLLLLACGTTAQQAEELLRSWTFSNKQRESIVKLLSLHESYLQQPNAGDAES 318
Query: 314 KKLFYL-----YGDKVMIAKLKIFLALHYNNLTHQDTCFILQV---LSDIIHWKKPLFPL 365
+L ++ YG + L++ ALH+ + FI Q+ L D+ +
Sbjct: 319 SRLKWISLVLAYGVEAAQGWLEMQTALHHAGASSAPLTFIRQLDVWLQDLRIRSLKDLAI 378
Query: 366 TGDDVVK 372
TG ++++
Sbjct: 379 TGSELLE 385
>gi|154249575|ref|YP_001410400.1| polynucleotide adenylyltransferase region [Fervidobacterium nodosum
Rt17-B1]
gi|154153511|gb|ABS60743.1| Polynucleotide adenylyltransferase region [Fervidobacterium nodosum
Rt17-B1]
Length = 883
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 86/418 (20%), Positives = 169/418 (40%), Gaps = 22/418 (5%)
Query: 15 LINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
++N+L L+ ++ +VGG VRD ++N+ DIDI + ++ +
Sbjct: 467 IVNLLRLIGFFGNEMNSPVYVVGGFVRDLILNIENYDIDIVVEGNGIEFAKYMAQQLNAI 526
Query: 71 IPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + T +I D+ T R++ V K D RRDFTINA+
Sbjct: 527 VVPYEKFFTANVIFKDGFKIDVATARTEYYESPGELPQVDISTIKKDLYRRDFTINAMAI 586
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ + + + + + + +ED R++R RF YG K +
Sbjct: 587 KLNPQDFGTLYDFFNCQKDLEEGVIRVLHNLSFVEDPTRMIRAVRFEQRYGFKMENYTLD 646
Query: 188 VASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LD 244
+ + + +S RI EI K+LE KNP+ AI M + K IF + +
Sbjct: 647 LLKKNLSERYLERVSGSRIRQEIEKILEEKNPIKAIKRMAELDMIKHIFPKTYYTATMEE 706
Query: 245 QLSQVIEA----EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+ ++ + ++ FE D + + + DK ++ M K+ P++ L F
Sbjct: 707 KFVRLFKFIPYLKERFENFNDFYAVSTIFLEYYDKSTLEEMRAKYGYPKKFIETLK--FT 764
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
N S+ E + F + I+ + L + ++L + +++ +
Sbjct: 765 ENIIIPVKSLIENRYPFSDIYKVCGKSNPYIYSHIS-AYLDEDEQNYLLSYIDTVLNTRI 823
Query: 361 PLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRKLIASSQ 416
+TG +++ Y + G + NIL +++S LS+E + +++K I +
Sbjct: 824 EK--VTGKYLMERYQLKAGPILNNILEELFCLKLDNS-NLSEEIAIESIVKKHIEKIE 878
>gi|111115537|ref|YP_710155.1| polynucleotide adenylyltransferase [Borrelia afzelii PKo]
gi|216263443|ref|ZP_03435438.1| polynucleotide adenylyltransferase [Borrelia afzelii ACA-1]
gi|110890811|gb|ABH01979.1| polynucleotide adenylyltransferase [Borrelia afzelii PKo]
gi|215980287|gb|EEC21108.1| polynucleotide adenylyltransferase [Borrelia afzelii ACA-1]
Length = 410
Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats.
Identities = 92/395 (23%), Positives = 153/395 (38%), Gaps = 18/395 (4%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ +VGGA+RD L+N D D AT P+ ++++F I T I +GTI II
Sbjct: 20 NNYELYLVGGALRDLLLNKQPCDFDFATNATPEEIIKLFPNN----IKTGIKHGTIGIIF 75
Query: 85 RKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141
KK F+ITT R + + + A +T++ D RRDFTINA+ D +ID G
Sbjct: 76 NKKIFEITTYRIEKEYEKKRAPKQVKYTKNLIKDLKRRDFTINAIAMDIFNFNIIDCYDG 135
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
DL + I+ IG+ + R ED LRILR RF + + + K + L I
Sbjct: 136 KKDLNKKIIRCIGNPNKRFEEDALRILRAARFSSTLNFNIEKNTLISMKYKKENILMISK 195
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
KLLE N I ++ FK +L+ +++I+ +
Sbjct: 196 ERIKNE-FQKLLEGVNIQKGIYYLKKVDFFKNF------FNLEIKTKLIKKTVLLNKDKF 248
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L +L + K + + ++ + + N ++ ++ + YL
Sbjct: 249 YLKAITILTIEKPIKELKENLTSLKFSNKEIKLILFYRSIIDNNNIFNVKKLSDIRYLLS 308
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPP 377
+I + FI + + K P + G D+
Sbjct: 309 KSTREHYKEIIDIYKALKGKKKKYLFITKNIKRKKLLKSPLSLKDLKINGKDIQNIIQIE 368
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K +G IL I + ++ L ++ L
Sbjct: 369 DKNIGKILNILLSYVIENPKLNTKNYLIKKIKTLK 403
>gi|156744039|ref|YP_001434168.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Roseiflexus castenholzii DSM 13941]
gi|156235367|gb|ABU60150.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Roseiflexus castenholzii DSM 13941]
Length = 458
Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats.
Identities = 69/459 (15%), Positives = 140/459 (30%), Gaps = 58/459 (12%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVM 60
+S++QH L + L + + +VGGAVRD L+ L DID+ +
Sbjct: 1 MSLLQHPLLET--LAPLFDALARAGGRPLLVGGAVRDLLLGLPPTDIDVEVYGIDGQHLA 58
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKAD 116
+ +V S+G +K+ D+ G A+ + +
Sbjct: 59 AALAPFG-RVDAVGRSFGVLKLRLDGYNVDVALPARYRPAAAGEPGALAEYDPSLTPREA 117
Query: 117 SLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINAL G ++DY GG DL R + +D LR+LR +F A
Sbjct: 118 LARRDFTINALALTPSGDLVDYFGGRADLEARRLCHT---SEAFGDDPLRVLRAMQFAAR 174
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI------ 230
+ + + + +P + + G
Sbjct: 175 FNMRLAPDTAALCRTLLPASAGLPLDRIWREWHKWATLGAHPSAGLRALDESGWLALYPE 234
Query: 231 -----FKEIFLDVQEISLDQLSQVIEAE--------QVFEWKIDSLLRFIVLISWQDKKS 277
L + + + + ++L F L K
Sbjct: 235 LAALQGCPQHPHFHPEGDVWLHTLYVCDAAVRIAERDALDARDRAVLIFAALCHDLGKPP 294
Query: 278 ----------------------ILSMAKKFSLPREIRYFLISFFNCNFN--QKTLSIPEI 313
+ + P + + + + +
Sbjct: 295 TTIVEEDGIPRSPGHATAGVPLTRAFLARIGSPHWLEPLVTPLVREHLAHLHTPPTPRVV 354
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLT----HQDTCFILQVLSDIIHWKKPLFPLTGDD 369
++L + ++ ++ A + ++ +P + G D
Sbjct: 355 RRLAHRLTPATLVQWERLVEADASGRPPLPPERPAAAHLALAEAEGAAKNRPAPLVRGRD 414
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ G+ PG ++G +L + ++ +F+ +E + +L
Sbjct: 415 LIAAGVEPGPRLGALLRRAYEAQLDGAFRTVEEGIAWVL 453
>gi|78188698|ref|YP_379036.1| HDIG [Chlorobium chlorochromatii CaD3]
gi|78170897|gb|ABB27993.1| HDIG [Chlorobium chlorochromatii CaD3]
Length = 476
Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats.
Identities = 80/474 (16%), Positives = 168/474 (35%), Gaps = 59/474 (12%)
Query: 1 MVSIVQ-HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59
M ++ + L I + ++ + +VGG VRD +M D+DI T P
Sbjct: 1 MKALPAITPFAIPDILCRIGDIADREDAACYLVGGYVRDLMMKRPCTDVDIMITGDPVPF 60
Query: 60 MRIFSKT-RYKVIPTSISYGTIKIICRK-----KYFDITTLRSDLITDGRYAKVVFTRDW 113
+ + + + + T ++ ++ R + +
Sbjct: 61 AHMVQEELQGRNFVLFERFRTAQLELDDPNLGTFKVELVGARKESYNSDSRKPITLVGTL 120
Query: 114 KADSLRRDFTINALYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169
+ D +RRDFTINAL + V D G+ D+ + ++ + +D LR++R
Sbjct: 121 EDDLMRRDFTINALAMRLNREERYTVTDLFNGMEDMEAKILRTPLEPLQTFSDDPLRMMR 180
Query: 170 FFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229
RF A + + L A + + I+S ER+ E K++ P ++ ++ G
Sbjct: 181 AARFAAQLDF-TLLPNALEAIRAMHERIHIVSMERVSHEFLKIMRTHRPSVGLLILHETG 239
Query: 230 IFKEIFLDVQEI-SLDQLSQVIEAEQVFEW----------KIDSLLRFIVLISW------ 272
+ KE+ +V + ++Q+ + + +F + LR L+
Sbjct: 240 LLKELLPEVSAMAGIEQVDGMGHKDTLFHTMQVVDTVATYSDNLWLRIAALLHDVAKPVT 299
Query: 273 ----------------QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
K + + + E ++ + LS EI
Sbjct: 300 KRFSKQSGWTFHGHDAVGIKMVAKIFRTMRWSHEHLEYVQKLVRLHHRPIPLSKEEITDS 359
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LF 363
L+ + L +++T ++ + +++S+ H +
Sbjct: 360 AVRRLMFDAGEDLRDLMTLCRSDVTSKNPRKVARIMSNFNHVEAKIAEVGEKDQLAKWRP 419
Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
P++G D+++ G+ GK VG I + I+ +E +RK+ +
Sbjct: 420 PISGQDIMEALGLAEGKAVGKIKKQMENAVIDGIIAYDREAALAYVRKVYEEMK 473
>gi|325285000|ref|YP_004260790.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Cellulophaga lytica DSM 7489]
gi|324320454|gb|ADY27919.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Cellulophaga lytica DSM 7489]
Length = 471
Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats.
Identities = 74/457 (16%), Positives = 160/457 (35%), Gaps = 57/457 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTRY 68
D + I + S ++GG VRD L+ + +DID+ + + +
Sbjct: 10 IKDPIFLVIAEAAAELNVASYVIGGFVRDFLLKRGTPKDIDVVAVGSGIELAQKVASKLP 69
Query: 69 K--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ ++GT + + R + + +V + D RRDFTINA
Sbjct: 70 TNPKVSVFKNFGTAMLKYNDLELEFVGARKESYHEDSRKPIVENGSLEDDQNRRDFTINA 129
Query: 127 LYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ D G+NDL N+ IK + +D LR++R RF + NI
Sbjct: 130 MAISLNKNTYGQLLDPFNGINDLANKIIKTPLEPGVTYSDDPLRMMRAIRFATQL-QFNI 188
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI- 241
+ ++ + K + I+S ERI E+NK++ + P ++ + I ++ +
Sbjct: 189 EEKSFLSITENKDRINIISKERIVDELNKIMNSSKPSIGFALLHKSKLLPFILPELSALQ 248
Query: 242 ----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSL 287
+ + + + E + LR+ L+ K F
Sbjct: 249 GIEEIEGHKHKDNFWHTLEVVDNISENTDNLWLRWAALLHDIGKAPTKKFHKKKGWTFRG 308
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI-------------------AK 328
I ++ + + L + ++
Sbjct: 309 HEFIGSKMVYKLFKRLRMPLNDKMKYVQKMVLMSSRPIVLSEDFVTDSAVRRLIFDAGEN 368
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YG 374
++ + L ++T ++T + ++ + P+TG++++K +
Sbjct: 369 IEDLMILCEADITTKNTKKQRKYRNNFKLVRQKIVEVEERDQIRNFQPPVTGEEIMKTFN 428
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLS-QEDLHHLLRK 410
+ P K++G + K+ ++ + E + +L+K
Sbjct: 429 LKPSKEIGILKEAIKEAILDGTIPNDYNEAYNFMLKK 465
>gi|270292416|ref|ZP_06198627.1| polyA polymerase [Streptococcus sp. M143]
gi|270278395|gb|EFA24241.1| polyA polymerase [Streptococcus sp. M143]
Length = 354
Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats.
Identities = 86/365 (23%), Positives = 157/365 (43%), Gaps = 17/365 (4%)
Query: 49 DIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAK 106
DIAT+ P+ +IF +T I +GT+ ++ + +++TT R++ + R +
Sbjct: 2 DIATSSYPEETKQIFPRTA----DIGIEHGTVLVLDGNEEYEVTTFRTEDVYVDYRRPSA 57
Query: 107 VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166
V F R + D RRDFT+NA D+ G++ID GL DL N+ ++ +G A R ED LR
Sbjct: 58 VSFVRSLEEDLKRRDFTVNAFALDETGEIIDLFHGLEDLENQVLRAVGIASERFNEDALR 117
Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226
I+R FRF A G ++ + A L+ +S ER + E +KLL A + M
Sbjct: 118 IMRGFRFQASLGF-ELEPETFEAMKSLTPLLEKISVERTFVEFDKLLLAPFWRVGLSSMI 176
Query: 227 NGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286
+ L S D+L+++ + E F ++ S + L+ + K K +
Sbjct: 177 ESQAYNY--LPDMAGSQDKLNRLFDLESDFTFE-SSEQAWAALLWTLEIKDAQPFLKAWK 233
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346
R+ + ++ + + + + L L +
Sbjct: 234 TSRQFAKQVQDLLTILALREEGELSKRDCYRFD------LDSLLQAENLRQAQGKAVNPQ 287
Query: 347 FILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
I + + + K + G ++K YG PG +G +L + ++ + ++ +H
Sbjct: 288 AITETYQSLTIYDKKEIQINGGILIKEYGYQPGPDLGEVLTEIEFAIVDGELENDRQAIH 347
Query: 406 HLLRK 410
LR+
Sbjct: 348 AYLRE 352
>gi|148656960|ref|YP_001277165.1| polynucleotide adenylyltransferase region [Roseiflexus sp. RS-1]
gi|148569070|gb|ABQ91215.1| Polynucleotide adenylyltransferase region [Roseiflexus sp. RS-1]
Length = 874
Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats.
Identities = 66/420 (15%), Positives = 140/420 (33%), Gaps = 15/420 (3%)
Query: 7 HKWFHDSDLINILS----LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
++ D DL+ IL + + IVGGAVRD ++ + D+D+ +
Sbjct: 446 ERFL-DRDLLAILRRAGAIAQQRGAALYIVGGAVRDMILQRTPDDLDLVVEGDAIGLAEA 504
Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYF------DITTLRSDLITDGRYAKVVFTRDWKAD 116
+ + + ++GT + ++ D R++ V + D
Sbjct: 505 LAAELNGTVRSHAAFGTATLTLAREEGQAPLTLDFVMARTEFYERPSALPDVEAASLRHD 564
Query: 117 SLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFF 174
RRDFTIN L ++ R + + + ++D RILR R
Sbjct: 565 LHRRDFTINTLAICLNPTRYGWLYDFYGGRRDITRKLIRVLHNLSFIDDPTRILRAARLA 624
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWS-EINKLLEAKNPLNAIVHMYNGGIFKE 233
A G + ++G+ ++ + E+ +L ++P A+ + + G+ +
Sbjct: 625 ARLGFTIEPRTRALIGDALEQGVLGRATPQRIMHELRLILAEESPEPALALLDDLGVLRA 684
Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
+ ++ + + F L +L+ + A + LP
Sbjct: 685 LHPALRWTDTIAEWFAVARQAAFPDTALPDLYLALLLYPLTGDERATFAATYRLPASETR 744
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353
L +TL + + A I A + +
Sbjct: 745 LLADITLVRERLETLLAEAEHPEQRIADSAIDRALHGIGTAALRAAQIAEPHTAAQAIQR 804
Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
I H + + G + G+ PG + G +L + +++ ++ +R+ +A
Sbjct: 805 YIDHLRGVRLAVDGKFLESLGLRPGPRFGELLAGLRAAYLDGIVTTREDQ-EAWIRQAVA 863
>gi|109947332|ref|YP_664560.1| poly(A) polymerase [Helicobacter acinonychis str. Sheeba]
gi|109714553|emb|CAJ99561.1| poly(A) polymerase [Helicobacter acinonychis str. Sheeba]
Length = 385
Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats.
Identities = 84/393 (21%), Positives = 139/393 (35%), Gaps = 24/393 (6%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
L K + +VGG VRD LM + +D D+ + L + K ++V+ T I +G
Sbjct: 12 FDLYEKSHYELYLVGGCVRDCLMGFAPKDYDLTSNALVSESKELLLKHHFRVLETGIKHG 71
Query: 79 TIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136
TI + K ++ITT R I R ++VF+ D RRDF++NA+ +I
Sbjct: 72 TITALKNNKSYEITTFRVEKGHIKHRRPKELVFSAHLTDDLKRRDFSMNAIAYSPTKGLI 131
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
D G N + NR I+ +G R ED LRILR RF A G K +
Sbjct: 132 DPFKGQNAIENRMIECVGKVRLRFFEDALRILRALRFGATLGFK-------------IET 178
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
+ + L + + + + I + + L ++ E +
Sbjct: 179 NTKRAVFACKDLLKHLSKERLQSELNKLLMGKNAYGVIKEYQEILELVIQERLENVEFLK 238
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+ LR + + P+++ C+ + K
Sbjct: 239 NAPFNLELR------LLGFFTHQKSLENLRYPKKMIILFAKAKECHQAFLNIHNKTELKF 292
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376
D F AL + + ++ + +KK L G + Y
Sbjct: 293 LLKNYDLEPFNLALDFYALENPKHALKIKGLLKEIFNANEPFKKEHLVLKGGALKNYQHQ 352
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
K+G IL C I + S E L ++
Sbjct: 353 ---KIGEILNACLDLVITNPKNNSLEFLIEWVK 382
>gi|253700551|ref|YP_003021740.1| hypothetical protein GM21_1929 [Geobacter sp. M21]
gi|251775401|gb|ACT17982.1| CBS domain containing protein [Geobacter sp. M21]
Length = 875
Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats.
Identities = 70/419 (16%), Positives = 136/419 (32%), Gaps = 30/419 (7%)
Query: 18 ILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
IL L + D+ VGG VRD L+++ DID+ F+ + +
Sbjct: 462 ILHDLGRIGDQLDLTVYAVGGFVRDLLLDIQNMDIDVTVDGDGILFAETFAAQFGCRVKS 521
Query: 74 SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GT I+ D+ + R + V K D RRDFT+N L
Sbjct: 522 HQKFGTAVIVFPDGFKIDVASTRLEYYVSPGALPTVERSSLKMDLYRRDFTVNTLAIALN 581
Query: 133 GKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G + + + +ED R+ R RF K +
Sbjct: 582 GDSFGKLIDYFGAYRDLQSRVIRVLHNLSFVEDPTRVFRAIRFEQRLNFKIAKHTEDLIK 641
Query: 191 IK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL--DVQEISLDQLS 247
+ L+ L R+ +E+ ++L K PL I M + G+ + I ++ L
Sbjct: 642 NAVKMEFLEKLGGRRLLAELVQILREKEPLKGIGRMASLGLLRFIHPVIELTPAMQGALE 701
Query: 248 Q---------VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR----EIRYF 294
+ ++ E+ +E L ++ + + + E+R
Sbjct: 702 ETRYVVSWFDLLYLERPYESWSVYFLTLCEGLTEEQFWGTCTRLAVAEHYKERLVEMRRQ 761
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ S Y + + L +A + + L
Sbjct: 762 SEELIGNLERKLARSEKVDNSEIYFTLKGLGVEVLLYHMAKSRSAEVKRCISLYFTKLDG 821
Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ + G+D+ + G+ PG +L +N ++++ L+R+++
Sbjct: 822 MH------PLIGGEDLKELGVEPGPLYRELLDLVLSARLNGKSASREDEI-RLVREVLE 873
>gi|332308267|ref|YP_004436118.1| poly(A) polymerase [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332175596|gb|AEE24850.1| poly(A) polymerase [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 474
Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats.
Identities = 82/425 (19%), Positives = 152/425 (35%), Gaps = 44/425 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ +D D+ T P++V +F R
Sbjct: 47 SDNALKVLYRLHNNGYQAFLVGGCVRDILLGKKPKDFDVTTDATPEQVKELFRNCRL--- 103
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI-----------------------TDGRYAKVV 108
+ ++ ++ ++ T R G+ +
Sbjct: 104 -IGRRFRLAHVVFGREIIEVATFRGHHPSQDEDKENDKDKDSKGQNLSKQSDHGQLLRDN 162
Query: 109 FTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167
+ D+ RRDFT+NA+Y + + D+ G+ ++NR I IGD R ED +R+
Sbjct: 163 VFGSIEEDAERRDFTVNAMYYNIADYSIHDFANGMQAVKNRQITMIGDPATRYREDPVRM 222
Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227
LR RF G I + + + + R++ E+ KLL + L+ +
Sbjct: 223 LRAVRFSVKLGM-KISPETAKPIYELAPLMANIPPARLFEEVLKLLLSGQGLDTYKLLNE 281
Query: 228 GGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287
G+F+++F + + Q S+ + + D+ + S A
Sbjct: 282 FGLFEQLFPQLTPLLKSQNSRELAFIEQVLMNTDNRI-----NSDMKVTPAFIFAALLWY 336
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
P E R N + + + ++MI K L +
Sbjct: 337 PLEERCQ-QHMVEGGLNHFDAFNLALSDVLHRQIQRIMIPKRFTITVREIWQLQQRLPKR 395
Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL-SQEDLHH 406
+ + P F D ++ G G G +L Q W + FQ + E
Sbjct: 396 YGR--RAFQMLEHPKFRAAYDFLLIRGQIEG---GELL-ELSQWW--TDFQNLNPEQRQG 447
Query: 407 LLRKL 411
+L+ L
Sbjct: 448 MLKTL 452
>gi|212551022|ref|YP_002309339.1| tRNA nucleotidyltransferase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549260|dbj|BAG83928.1| tRNA nucleotidyltransferase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 474
Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats.
Identities = 81/470 (17%), Positives = 168/470 (35%), Gaps = 56/470 (11%)
Query: 1 MVSI-VQHKWFHDSDLINILSLLNKG-EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58
M SI + + + + +L+ + + ++GG VRD ++ +DID+
Sbjct: 1 MSSIQISREKLQTNPIFRVLTSTSDTLGVDAYVIGGFVRDIFLHRLSKDIDVVCVGNGIS 60
Query: 59 VMRIFSKTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
+ + +K+ +YGT ++ R + R + + +V + D
Sbjct: 61 LAKEVAKSLGSASLILFKNYGTAQLKYRDIAIEFVGARKESYSWAFRNPIVEEGSLEDDI 120
Query: 118 LRRDFTINALYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
RRDFTIN L ++ID GL DL +I+ D +D LR+LR RF
Sbjct: 121 KRRDFTINTLAICINQNRFGELIDIFDGLTDLEECSIRTPLDPDITFSDDPLRMLRAIRF 180
Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
+ G I+S + + I+S ERI E+NK++ + P + G+ +
Sbjct: 181 ASQLGFF-IESKTFESIGNNCNRINIVSRERIVDELNKIILSPRPSVGFELLEKTGLLRL 239
Query: 234 IFLDVQEI-----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD-----KKS 277
I ++ + + + + + + LR+ L+ + +
Sbjct: 240 ILPELTALKGIETREGIGHKDNFNHTLAVVDNLAKVSNKLWLRWAALLHDIGKPLVKRFN 299
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI----------- 326
+ L F ++ ++KL +L+ +++
Sbjct: 300 YRCGWTFHGHECKGAEMLKKIFRRMRMPINNNLQYVEKLVFLHMRPIVLSDNEVTDSAIR 359
Query: 327 -------AKLKIFLALHYNNLTHQDTCFILQVL-------------SDIIHWKKPLFPLT 366
+ + L ++T ++ + Q L + + P+
Sbjct: 360 RLLFEASDDIDDLMMLCEADITSKNLGKVKQFLYNFKLVRNKLKSIEEKDRVRNFQPPID 419
Query: 367 GDDVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
G +++K +P KK+G + + K+ ++ E H+ L L
Sbjct: 420 GVEIMKMFSLPASKKIGELKLALKEAILDGEIPNEYEAAHNYLINLAKQR 469
>gi|297584686|ref|YP_003700466.1| CBS domain-containing protein [Bacillus selenitireducens MLS10]
gi|297143143|gb|ADH99900.1| CBS domain containing protein [Bacillus selenitireducens MLS10]
Length = 869
Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats.
Identities = 74/413 (17%), Positives = 128/413 (30%), Gaps = 11/413 (2%)
Query: 12 DSDLINILSLLNKG----EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
DL +ILSL+ K + ++GG VRD L+ + +D+DI + +
Sbjct: 455 HPDLFSILSLIGKTADHLNMSAYLIGGMVRDLLLQHANEDMDIVVEGDGIVLAEELKASY 514
Query: 68 YKVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
I T + T D+T+ R++ V K D RRDFTINA
Sbjct: 515 GGQIRTHAEFRTATWKHPAGYKIDLTSARTEYYDFPAALPKVELSTIKEDLFRRDFTINA 574
Query: 127 LYADQQGKVIDYVGGLNDLRN--RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ GK + + + +ED RILR RF +G + D
Sbjct: 575 MGICISGKEFGDLLDYFHGFEDLNKGRIRTLYNLSFVEDPTRILRAVRFENRFGFQMDDQ 634
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+A A L + S + E + + VQE ++
Sbjct: 635 TEDLAIQSANNLLSVSKSRQSSELSRMFYEEDPLQSFKRLKQLTITSYILSSKVQEDQVE 694
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ + S I + + L +
Sbjct: 695 NRIRTFHHFRSACAPEQSDFSPASWIGYIAMFYYEVEKEFHQLLGYAERKQERKLLHDIR 754
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
I I+ L ++ D + +L ++ + F
Sbjct: 755 AVIPLIHRIRSGSSLSDIHRLLVHFNDEAIAAGAAHCLTDASDL--LLDYMLKRQTLTFS 812
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR-KLIASSQ 416
L+G D++ G P +L + + + +E L H + K AS++
Sbjct: 813 LSGQDLINAGYTPSPAFKEMLFEAELYQLEHP-EYDREALLHYIEDKYPASTK 864
>gi|51598959|ref|YP_073147.1| polynucleotide adenylyltransferase [Borrelia garinii PBi]
gi|51573530|gb|AAU07555.1| polynucleotide adenylyltransferase [Borrelia garinii PBi]
Length = 410
Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats.
Identities = 93/395 (23%), Positives = 158/395 (40%), Gaps = 18/395 (4%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II
Sbjct: 20 NNYEFYLVGGALRDLLLNKQPCDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75
Query: 85 RKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141
KK F+ITT R + + +T++ D RRDFTINA+ D +ID G
Sbjct: 76 NKKIFEITTYRIEKEYENNRTPKQVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDCYNG 135
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
DL + I+ IG+++ R+ ED LRILR RF + K + + K + L I
Sbjct: 136 KKDLNKKIIRCIGNSNKRLAEDALRILRAARFSSTLNFKIEKNTLISMKYKKENILMISK 195
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+KLLE KN I ++ FK +L+ +++I+ + +
Sbjct: 196 ERIKNE-FHKLLEGKNIQKGIYYLKKVDFFKNF------FNLEIKTKLIKKTALLNKEKF 248
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L +L + + + ++ + + N+ +I ++ + YL
Sbjct: 249 YLKAITILTIEKPITELKEKLTLLKFSNKEIKLILFYRSIIDNKNIFNIKKLSDIRYLLS 308
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPP 377
+I + FI++ + K P + G D+
Sbjct: 309 KSTREHYKEIIDIYKALKGKKKKYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEEIE 368
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K +G IL I + +++ L ++ L
Sbjct: 369 NKNIGKILNILLNHVIENPRLNTKKYLIKKIKTLK 403
>gi|195146334|ref|XP_002014141.1| GL23016 [Drosophila persimilis]
gi|194103084|gb|EDW25127.1| GL23016 [Drosophila persimilis]
Length = 351
Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats.
Identities = 77/263 (29%), Positives = 127/263 (48%), Gaps = 9/263 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
++ ++LSL K + + I GGAVRD +M + +DID ATT PD++ +F+K +
Sbjct: 41 IFTPEVDSLLSLFKKYDYEIRIAGGAVRDIIMGIKPKDIDFATTATPDQMKDMFTKENVR 100
Query: 70 VIP-TSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI + F++TTLR D+ T+GR+A VVFT DW+ D+ RRD TIN++
Sbjct: 101 MINSKGEKHGTITPRINGKENFEVTTLRIDVRTNGRHADVVFTTDWQLDANRRDLTINSM 160
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH-------YGEK 180
+ G V DY G +DL+ R + F+GDA RI EDYLRILR+FRF+ + +
Sbjct: 161 FLGFDGTVYDYFYGYDDLQQRRVVFVGDADIRINEDYLRILRYFRFYGRIAKDAESHDPQ 220
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
++ + + L+ + + + E++ ++
Sbjct: 221 HLGRHQEKTLKVWQGSAVDSEYTTLRDYQKLCLQPYAKRDYVEQLLKYTRKVELYNQLKA 280
Query: 241 ISLDQLSQVIEAEQVFEWKIDSL 263
S + ++
Sbjct: 281 WSTPSFPLNGNILKDHGLSGKNI 303
Score = 63.3 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 8/171 (4%)
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
F D R +V + D + + R + + +
Sbjct: 169 YDYFYGYDDLQQRRVVFVGDADIRINEDYLRILRYFRFYGRIAKDAESHDPQHLGRHQEK 228
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-------QVLSDIIHWKKPLFPL 365
K++ L+ + L +D L ++ + + W P FPL
Sbjct: 229 TLKVWQGSAVDSEYTTLRDYQKLCLQPYAKRDYVEQLLKYTRKVELYNQLKAWSTPSFPL 288
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
G+ + +G+ GK +G L + W +S FQL+ L L +++ Q
Sbjct: 289 NGNILKDHGL-SGKNIGTGLSLLRLMWADSDFQLTSGQLLEKLPQILEKLQ 338
>gi|86142260|ref|ZP_01060770.1| tRNA nucleotidyltransferase [Leeuwenhoekiella blandensis MED217]
gi|85831012|gb|EAQ49469.1| tRNA nucleotidyltransferase [Leeuwenhoekiella blandensis MED217]
Length = 476
Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats.
Identities = 83/454 (18%), Positives = 153/454 (33%), Gaps = 61/454 (13%)
Query: 17 NILSLLNKGEDKS----CIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKT--RYK 69
I + + ++ ++GG VRD L+ +DIDI + +
Sbjct: 13 KIFDTITQASEELNLETYVIGGYVRDFLLKRGSAKDIDIVALGSGIELAERVASLLPHKP 72
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ +YGT + + R + + VV + D RRDFTINAL
Sbjct: 73 KVQVFKTYGTAMLRDGDIEVEFVGARKESYNENSRNPVVENGSLEDDQNRRDFTINALAL 132
Query: 130 DQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ID GL DL I+ D +D LR++R RF I+
Sbjct: 133 SLNKSTLGNLIDPFEGLVDLEREIIRTPLDPDITYSDDPLRMMRAIRFATQLDFM-IERK 191
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
L A K +KI++ ERI E+NK++ +K P + + G+ I ++
Sbjct: 192 SLEAISANKDRIKIITKERIVDELNKIMLSKTPSKGFLLLEKTGLLNYILPELTALKGIE 251
Query: 239 ----QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP------ 288
Q+ + + + + E D LR+ L+ K KK
Sbjct: 252 EKEGQKHKDNFYHTLEVVDNISENTDDLWLRWAALLHDIGKAPTKRFHKKIGWTFHGHEF 311
Query: 289 -----------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
E F+ + ++ + L+
Sbjct: 312 VGSKMVFKLFKRLKMPLNEKMKFVQKLVLMSSRPIVIAEDFVTDSAVRRLIFDSGDYLED 371
Query: 332 FLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPP 377
+ L ++T ++ + ++ H + P++G++++ + + P
Sbjct: 372 LMTLCEADITTKNPKRYRKYHNNFKTVRQKIEEVEERDHVRNFQPPVSGEEIMSTFDLQP 431
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHL-LRK 410
K++G I K+ + E H L+K
Sbjct: 432 SKEIGIIKEAIKEAILEGEIPNEYEAAHAFMLKK 465
>gi|312149496|gb|ADQ29567.1| polynucleotide adenylyltransferase [Borrelia burgdorferi N40]
Length = 410
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 92/395 (23%), Positives = 158/395 (40%), Gaps = 18/395 (4%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ +VGGA+RD ++N D D AT P+ ++ +F I T I +GTI II
Sbjct: 20 NNYEFYLVGGALRDLMLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75
Query: 85 RKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141
KK F+ITT R + + A +T++ D RRDFTINA+ + +IDY G
Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLIKDLERRDFTINAIAMNIFNFNIIDYYNG 135
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
DL + I+ IG+ + R+ ED LRILR RF + + + K + L I
Sbjct: 136 KKDLNKKIIRCIGNPNKRLEEDALRILRAARFSSTLNFNIEKNTLISMKYKKENILMISK 195
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+KLLE N I ++ FK +L+ ++VI+ + +
Sbjct: 196 ERIKNE-FHKLLEGINIQKGIYYLKKVDFFKNF------FNLEIKTKVIKKIALLDKNKF 248
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L +L + K + + ++ + + N ++ ++ + YL
Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRSIIDNNNIFNVKKLSDIRYLLS 308
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPP 377
+I ++ FI++ + K P + G D+
Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K +G IL + I + ++ L ++ L
Sbjct: 369 NKNIGKILNMLLRCVIENPKLNTKNYLIKKIKTLK 403
>gi|225012713|ref|ZP_03703148.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Flavobacteria bacterium MS024-2A]
gi|225003246|gb|EEG41221.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Flavobacteria bacterium MS024-2A]
Length = 479
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 82/461 (17%), Positives = 162/461 (35%), Gaps = 63/461 (13%)
Query: 15 LINILSLLNKGEDKS----CIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKT--R 67
+ +L + +S ++GG VRD L+N +DIDI +
Sbjct: 12 ATPLFEVLQQTVAESNTLGYVIGGFVRDHLLNRSHKKDIDIVALDSGIDLAIAVQNKLKG 71
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
K + +YGT + + R + + V + D RRDFTINAL
Sbjct: 72 AKAVQVFKTYGTAMVHWNNTDLEFVGARKESYSKESRNPEVKPGTLEDDQNRRDFTINAL 131
Query: 128 YADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+ID GL DL ++ D +D LR+LR RF I
Sbjct: 132 AISLNKDDFGLLIDPFNGLKDLEEGVLRTPLDPDITYSDDPLRMLRAIRFATQLDF-TIA 190
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----- 238
SD + + + + I++ ERI E+NK+L P + + G+ + I ++
Sbjct: 191 SDSYDSISRNAERIDIITKERIVEELNKILMTPKPSKGFILLEKTGLLQRILPELIDLKG 250
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM-----AKKFSL 287
Q+ + + + + + D LR+ L+ K +
Sbjct: 251 VEEIEGQKHKDNFYHTLEVVDNLCKNSDDLWLRWAALLHDIGKAPTKKFKPPVGWTFHNH 310
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK------------------L 329
+ F + ++K+ ++ ++IA+ +
Sbjct: 311 EFVGAKMTYNLFKRMKMPLNEKMKFVQKMVFMSSRPIIIAEEQVTDSAIRRLVFDAGPFI 370
Query: 330 KIFLALHYNNLTHQDTCFILQ-------------VLSDIIHWKKPLFPLTGDDVVKYG-I 375
+ L ++T ++ + ++ + H + P++G+ ++KY +
Sbjct: 371 DDLITLCEADITTKNPERFERYHNNFKIVREKIILVEEKDHLRNFQPPISGETIMKYFDL 430
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
P K++G I K+ + +E L+K+ + +
Sbjct: 431 KPSKEIGLIKEAIKEAILEGEIPNEREAA---LKKMKSEGK 468
>gi|311114001|ref|YP_003985222.1| RNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019]
gi|310945495|gb|ADP38199.1| RNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019]
Length = 495
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 89/460 (19%), Positives = 156/460 (33%), Gaps = 64/460 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ + + L K + +VGG VRD L++ + D+D T+ P+ I
Sbjct: 30 PEAMELGRLFAKHNYELALVGGPVRDMLLHRTSHDLDFCTSAKPEEFEHILRSWGHDGFW 89
Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R+K +ITT R D R +V + + D RRDFT+N
Sbjct: 90 DMGRKFGTLGAVRRRKDGTEVKVEITTYRCDDYEPDSRKPEVKYGDTLEGDLSRRDFTVN 149
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG NDL ++ D +D LR++R RF A G I++
Sbjct: 150 AMALRVPDLEFVDPFGGANDLAKGILRTPVDPRQSFDDDPLRMMRAVRFVAQLGF-TIEA 208
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A + L I+S+ER+ EI K+L + NP I M GI + ++ + L+
Sbjct: 209 NTAEAILDMVSRLDIVSAERVRDEITKMLLSANPRAGIEAMVESGIADRVLPEIPALRLE 268
Query: 245 ----------------QLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKK--------- 276
L + I E E + D LR L+ K
Sbjct: 269 IDEHHRHKDVFEHTMMVLERAIALETDNEGAVPRPDLTLRLAALLHDIGKPRTRKFEEGG 328
Query: 277 -------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLY 320
K I + N + Y+
Sbjct: 329 KVSFHHHDVVGAKMTRKRMKALHFDHHIIDDVSELVNLHLRFHGYVDEPWTDSAVRRYVK 388
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDV 370
+ +L + + Q + ++ + L G+++
Sbjct: 389 DSGHLYERLNRLTRADATTQNKRKSLMFEQAMDEMEERVKELKKQEDFNAIRPDLDGNEI 448
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
++ + PG VG H +++ + L +
Sbjct: 449 MQLLDLKPGPIVGKAYKHMLDYRLDNGPVDHDIAVEELKK 488
>gi|308179175|ref|YP_003918581.1| tRNA adenylyltransferase [Arthrobacter arilaitensis Re117]
gi|307746638|emb|CBT77610.1| putative tRNA adenylyltransferase [Arthrobacter arilaitensis Re117]
Length = 483
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 76/471 (16%), Positives = 159/471 (33%), Gaps = 68/471 (14%)
Query: 10 FHDSDLIN---------ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
D + + + + +VGG VRD + D+D T+ P+ +
Sbjct: 4 LPSPDALRQILPSVIFDLADRFVRAGHELSLVGGPVRDLYLGRVSPDLDFTTSARPEETI 63
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLR 119
++ S + +GTI + ++TT R+D + R V F + D R
Sbjct: 64 KVISGWADNIWDVGREFGTIAFKKGEHTLEVTTYRADAYDKESRKPIVAFGDNLHDDLFR 123
Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+N++ Q +++D G++ L + +I+ G +D LR++R RF +
Sbjct: 124 RDFTMNSMALRLPQLELVDPFDGVSSLEDGSIRTPGAPDISFSDDPLRMMRAARFASQL- 182
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ + + A + + I+S+ER+ E+ KL+ +P I + G+ ++ +V
Sbjct: 183 KIEVSPEVRKAMSEMTDRIDIISAERVRDELIKLINGADPRAGINLLVESGLADKVLPEV 242
Query: 239 QEISLDQ----------LSQVIEAEQVFEWKID---------SLLRFIVLISWQDKKSIL 279
+ L+ + EQ + D +LRF L+ K +
Sbjct: 243 SALRLEIDEHHRHKDVYQHSLTVLEQAIALETDDDGPVPGPNFILRFAALMHDIGKPATR 302
Query: 280 SM----------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ ++ + +
Sbjct: 303 KFEPSGAVSFRHHDMVGSKLTKARMRALRFDKDTTKAVARLVELHMRFYGYGEAGWTDSA 362
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFP 364
L+ L +++T ++ ++ +++ +
Sbjct: 363 VRRYVTDAGDLLEHLHRLTRSDVTTRNRKKADRLGFAYDDLEARIAKIAEQEELQSIRPD 422
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
L G+ +++ I P K VG + ++ L +E LR
Sbjct: 423 LDGEQIMRLLDIKPSKAVGRAYKFLLELRLDEG-PLGEEIATERLRNWWKE 472
>gi|295696304|ref|YP_003589542.1| Polynucleotide adenylyltransferase region [Bacillus tusciae DSM
2912]
gi|295411906|gb|ADG06398.1| Polynucleotide adenylyltransferase region [Bacillus tusciae DSM
2912]
Length = 422
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 85/402 (21%), Positives = 157/402 (39%), Gaps = 12/402 (2%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+++ L ++ VGG VRD L+ +D+DIAT P+ VM++F + +PT
Sbjct: 12 AAEEVIAALTDAGWEAVYVGGGVRDLLLGRGAKDVDIATAAPPEAVMKVFPEA----VPT 67
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYADQ 131
+ +GT+ I + ++TT R + R +T + D RRDFTINA+ +
Sbjct: 68 GLPFGTVTIPRQGIGVEVTTYRREGGYRDRRRPTRVEYTAKLEEDLSRRDFTINAMAMSR 127
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
++ID GGL DL I+ +GD R ED LR++R R A ++D ++A
Sbjct: 128 GFRLIDPFGGLGDLLAGQIRAVGDPAQRFAEDALRMVRALRLAAELSF-DLDPSVVLALN 186
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQLSQVI 250
K K ++ ++ ER+ E +L A G + + V + +
Sbjct: 187 KQMKDVRHVAVERVLGEWQRLAVGDVDKVARELAACGFLEWWTGMSVGRGRGIQVAAAWG 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR-EIRYFLISFFNCNFNQKTLS 309
A + ++ + ++ ++ K + R R + + C+F+
Sbjct: 247 RACRRLPRDAALRTGVLLWMLECTRQHAAAVTKSWRASRLFQRDVITWWEACHFDPLRAG 306
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLAL--HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
+ + Y G + L++ A+ + + + W + F
Sbjct: 307 PGDWARWLYHLGRERAETGLQVVQAVQGYGEEEEMASREAFRRAVDAQPLWDRRDFAAEF 366
Query: 368 DDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ + IPPG G ++ +N L L
Sbjct: 367 ETLCRAAHIPPGPLWGEAERALREALLNGQVANDPRALGEYL 408
>gi|319427561|gb|ADV55635.1| poly(A) polymerase [Shewanella putrefaciens 200]
Length = 494
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 102/241 (42%), Gaps = 16/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK K+ +VGG VRD L+ L +D D+ T P+ + ++F R
Sbjct: 75 SENALKVLYRLNKSGFKAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRNCRV--- 131
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R +GR + + D+ RRD
Sbjct: 132 -VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKISKANAEGRLLRDNVYGEIDEDAERRD 190
Query: 122 FTINALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D I GG DL+ T++ IGD R ED +R+LR RF
Sbjct: 191 FTVNALYYDISDYSIRSYGGGMADLKAGTLRLIGDPETRYREDPVRMLRAVRFATKLSM- 249
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
NI+ + L + + R++ E+ KL A L M +F +F V
Sbjct: 250 NIEDVTAKPIKQLAPLLTDIPAARMYEEVLKLFFAGKALANFEMMQEYKLFAPLFPQVDA 309
Query: 241 I 241
+
Sbjct: 310 L 310
>gi|313672930|ref|YP_004051041.1| polynucleotide adenylyltransferase region [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939686|gb|ADR18878.1| Polynucleotide adenylyltransferase region [Calditerrivibrio
nitroreducens DSM 19672]
Length = 885
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 80/406 (19%), Positives = 144/406 (35%), Gaps = 15/406 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L I ++ ++ E + +VGG VRD LM D+DI I + + F++ +
Sbjct: 470 LKQIGTIADELELNAYVVGGFVRDLLMKYENFDVDIVVEIDATILAKEFARRNNGRVAIH 529
Query: 75 ISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ T +I D T R++ A V K D RRDFTINA+
Sbjct: 530 DKFKTAVVILPDGNKLDFATARTEYYNMPASAPEVEISSIKNDLFRRDFTINAMAIKINE 589
Query: 134 KVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVAS 190
K + + I + ++D R LR RF Y + ++ L+ +
Sbjct: 590 KTFGLLLDFYGGQRDIIDKKIRVLHNLSFIDDPSRGLRAIRFAVRYNFEIGPHTNRLLKN 649
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG--GIFKEIFLDVQEISLDQLSQ 248
+ R++ E +L N L+AI M N F + ++ L
Sbjct: 650 AINLNLFDKIPGNRLFLETKYILSESNYLDAIKMMTNYGIMKFYIDKFKLDDLKLRIFEN 709
Query: 249 -----VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
+ + Q +R ++L S + +F L RE + ++ F
Sbjct: 710 FERYLIWHSVQCNTTVEPYFVRLLILFSDLKNNDFQKICDRFDLNRETKKRMMEGF--GK 767
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
++ + + + LK L ++ + +++ I W KP
Sbjct: 768 SKHIANKIKKSSYLKRSEIYYLFEGLKEEFILFTASILGDNYEELIRDYITEIRWIKPE- 826
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ G+D+ K GIPP + I ++ E+L +
Sbjct: 827 -IDGNDLKKLGIPPSQIYQKIFKQLTIFKLDGIINSKDEELKKAIE 871
>gi|289177756|gb|ADC85002.1| tRNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis
BB-12]
Length = 526
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 84/459 (18%), Positives = 159/459 (34%), Gaps = 66/459 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + + + +VGG VRD L++ D+D + P++ I +
Sbjct: 61 PEAIELGQMFADEGFELALVGGPVRDLLLHRRSHDLDFCSNARPEQFEPILRRFGHDGFW 120
Query: 72 PTSISYGTIKIICR-----KKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R + ++TT RSD D R +V + + D RRDFT+N
Sbjct: 121 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDVYDPDSRKPEVSYGDSLEGDLSRRDFTVN 180
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG NDL R ++ D + +D LR++R RF A G +I+
Sbjct: 181 AMALTVPDLEFVDPFGGANDLNKRVLRTPVDPYQSFDDDPLRMMRAVRFVAQLGF-SIEP 239
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A + ++I+S+ER+ E+ KLL + P I + + G+ + ++ + L+
Sbjct: 240 ETAEAITRMTDRIEIVSAERVRDELTKLLLSDRPRAGIEALVDSGLADVVLPEIPALRLE 299
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
+ + + VF+ D +LR L+ K
Sbjct: 300 -IDEHHRHKDVFDHTMIVVDRAVALETGPDGPVPAPDLVLRLAALMHDIGKPKTRRFEPG 358
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTL-SIPEIKKLFYLYG 321
K + + + + P Y
Sbjct: 359 GKVSFHHHDAVGAKMTRKRLKALRFDHHVVEQVSDLVDLHLRFHGYVDEPWTDAAVRRYV 418
Query: 322 DKV--MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
+ A+L + + ++ L GD+
Sbjct: 419 KDAGPLYARLNRLTRADATTQNRRKALMFEHAMDEMEERVAKLKEQEDIDAIRPDLNGDE 478
Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
++ + GI PG VG H + +++ + L
Sbjct: 479 IMAELGIAPGPLVGKAYRHMLEYRLDNGPVDHDTAVAEL 517
>gi|294674522|ref|YP_003575138.1| polyA polymerase family protein [Prevotella ruminicola 23]
gi|4204222|dbj|BAA74513.1| polyA polymerase [Prevotella ruminicola]
gi|294474228|gb|ADE83617.1| polyA polymerase family protein [Prevotella ruminicola 23]
Length = 479
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 73/458 (15%), Positives = 157/458 (34%), Gaps = 61/458 (13%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I ++ + +VGG VRD + DID+ +V + K +
Sbjct: 20 QISEAADRLGLECYVVGGYVRDIFLERPSNDIDVVVVGSGIKVAEELKRIVGKKAHLSVF 79
Query: 75 ISYGTIKIIC----RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
++GT ++ + + R + + +V + D RRDFTINA+
Sbjct: 80 KNFGTAQVKFWQKGTEYEVEFVGARKESYSHDSRKPIVENGTLEDDQNRRDFTINAMAIC 139
Query: 131 QQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ D GL DL + I + +D LR++R RF + I+ +
Sbjct: 140 LNKERFGELVDPFNGLADLEDGIIATPLEPGITFSDDPLRMMRCIRFATQLNFQ-IEEET 198
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
VA + +KI+S ERI E+NK++ +K P V + G+ I ++ + + +
Sbjct: 199 FVALERMADRIKIVSGERIKDELNKIILSKTPSRGFVDLQRCGLLNIILPELSALDIVEQ 258
Query: 247 SQVIEAEQVFEWKI-----------DSLLRFIVLISWQDKKSILSMA----KKFSLPREI 291
+ F + + LR+ L+ K F I
Sbjct: 259 KNGRAHKNNFYHTLEVLDNVAMHSDNLWLRWAALLHDVGKTKSKRWDAAIGWTFHNHNMI 318
Query: 292 -------------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
++ + + ++ + ++
Sbjct: 319 GAKMVPQIFRRLMLPLDMKMKYVQKLVDMHMRPIVIADEIVTDSAVRRLMNDAGEDIEDL 378
Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVKY-GIPPG 378
+ L ++T ++ L + ++ + G+++++ + P
Sbjct: 379 MTLCEADITSKNEVRKKMFLENFRMVREKLTDLKEKDYVRLLQPVIDGNEIMEMFHLQPC 438
Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
++VG + + K +++ + +E L LL + + +
Sbjct: 439 REVGVLKQYLKDAVLDNKVENEREPLMALL--MAKAKE 474
>gi|46204034|ref|ZP_00050593.2| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase
[Magnetospirillum magnetotacticum MS-1]
Length = 311
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 97/233 (41%), Positives = 137/233 (58%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ L+ L +++ +VGG VRD+L+ V DID+ TT+ P+ VM K
Sbjct: 19 LARDGVRACLAALRVEGEETRLVGGCVRDALLGQIVSDIDLTTTLRPEAVMDRARAAGIK 78
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+PT +++GT+ ++ ++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL
Sbjct: 79 AVPTGVAHGTVTLVVDGVPHEVTTLREDVETDGRHAVVRFGRDFARDAERRDFTINALSL 138
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D QG + D GG+ DL ++FIGDA RI ED LR+LRFFRF A YG D++GL A
Sbjct: 139 DGQGGLHDTTGGVADLAAGRVRFIGDAATRIREDALRLLRFFRFHARYGRGAPDAEGLAA 198
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+I A+ GL LS ER+ +E KLL A + A+ + G+ I V E+
Sbjct: 199 AIAARDGLDRLSRERVRAEFLKLLLAPRVVAAVTILSETGLLPRIVGGVGELG 251
>gi|325289973|ref|YP_004266154.1| CBS domain containing protein [Syntrophobotulus glycolicus DSM
8271]
gi|324965374|gb|ADY56153.1| CBS domain containing protein [Syntrophobotulus glycolicus DSM
8271]
Length = 854
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 72/408 (17%), Positives = 140/408 (34%), Gaps = 34/408 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L I + ++ +VGG VRD + S QD+D+ + F+ +V+
Sbjct: 462 LDKIKETADHLGIQAYLVGGFVRDLFLRKSSQDLDVVVEGDSN----SFANQLIEVVEVH 517
Query: 75 I-----SYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+GT+KI + DI R + + + K D RRDFT+NA+
Sbjct: 518 KVVQHHQFGTVKITFRDGTHLDIAGSRWEEYDFPGALPTIEESNLKEDLFRRDFTVNAMA 577
Query: 129 ADQQGKVIDYVGGLNDLRN--RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
V + + + +ED R++R RF Y K
Sbjct: 578 LCLNANRFGEVVDFYGGLRDLQQGEIRFLHNLSFIEDPTRMIRAVRFACRYHFKIAKVTR 637
Query: 187 LVASIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ L +S ER E+ +L + + + G+ K F +L +
Sbjct: 638 EAINTALQANVLLKISKERFTEELMLILPEQAYQKMVRELAAFGLMKNWFGREFAWNLAE 697
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ D +++ L+ + I ++ + + + + + +
Sbjct: 698 -------SEEEVKDWDLEKKWLGLLISLENDEIRAVLDRLAFTKSMLKHTLDYVAVRSKL 750
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ + L+G K I L H+D +++ + +
Sbjct: 751 RAAGDCPQEGYAALFGVKEGIVDLL---------KKHEDLRPLIESYQQ--ALQNLKMTI 799
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED---LHHLLRK 410
G D++ GIP G ++G IL W+ +E+ L +L++
Sbjct: 800 RGSDLLAAGIPEGPEIGRILQDIHLAWLTGKISDFEEERNYLLQILKR 847
>gi|116328419|ref|YP_798139.1| poly A polymerase family protein [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116121163|gb|ABJ79206.1| Poly A polymerase family of protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
Length = 432
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 94/418 (22%), Positives = 176/418 (42%), Gaps = 36/418 (8%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
D+I I + K + ++GG+VRD L++ + D+ T++LPD+++ +F +
Sbjct: 17 FREDIIRITQNIRKEGGECYLIGGSVRDLLLSKIPDEFDLTTSLLPDKILTLFK----RT 72
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALY 128
+PT I +GT+ ++ + + ++ITT R D+ F D RRDFT+NAL
Sbjct: 73 VPTGIKHGTVTVLIQDRSYEITTFRKDVDYIDGRRPEAVEFGVSLSEDLKRRDFTMNALA 132
Query: 129 ADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D + ++ID GL D++N+ I+ IGD R ED LR +R RF + G ++S+
Sbjct: 133 LDLEAKRLIDEHSGLEDIQNKIIRTIGDPIERFTEDGLRPIRAIRFVSSLGF-ALESETA 191
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
A I+ + +S ER+ E+NK L++KNP ++ I + + L
Sbjct: 192 KAIIQCRNITAKISKERVHDELNKTLKSKNPAPSLKLFKEFRILEL----FTSLKLYPTE 247
Query: 248 QVIEAEQVFEWKIDSL------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+++ E + L L + S+QD+ S K + + F +
Sbjct: 248 NTNVEKKIREVPVVPLSLRLSFLHAWLFGSFQDRNSAKQFMKDLRYSNQNTKDSLFFSDM 307
Query: 302 NFNQKTLSIPE------------IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
F Y + + I I + +D
Sbjct: 308 LFMMLNRKDDASLTDAEIRKAVLHPICVYAGRENLRILTEYILNLAYTYEPILKDIFDFR 367
Query: 350 QVLSDIIHWKKP---LFPLTGDDVVKY--GIPPGKKVGNILVHCKQEWINSSFQLSQE 402
++L + L G+D+++ +PP K++G++L + + + ++
Sbjct: 368 RILDLTERSQALVVTELALRGEDILRACPNLPP-KQIGSVLEKLLFHVLENPDENRKD 424
>gi|261278704|pdb|3H38|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form Ii
gi|261278705|pdb|3H39|A Chain A, The Complex Structure Of Cca-Adding Enzyme With Atp
gi|261278706|pdb|3H39|B Chain B, The Complex Structure Of Cca-Adding Enzyme With Atp
gi|261278707|pdb|3H3A|A Chain A, The Complex Structure Of Cca-Adding Enzyme With Ctp
gi|261278708|pdb|3H3A|B Chain B, The Complex Structure Of Cca-Adding Enzyme With Ctp
Length = 441
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 87/414 (21%), Positives = 154/414 (37%), Gaps = 25/414 (6%)
Query: 12 DSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D ++N+ LL K D+ +VGG VRD L+ + DIDI +
Sbjct: 16 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFL 75
Query: 68 YKVIPTSISYGTIK-IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + T + DI T R + V K D RRDFTINA
Sbjct: 76 PGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINA 135
Query: 127 LYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ K +ID+ GG DL+ I+ + ++D RILR RF + +
Sbjct: 136 MAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHT--LSFVDDPTRILRAIRFEQRFDFRIE 193
Query: 183 DSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE------IF 235
++ + ++G + + R+ E+ K+LE KNPL +I M + K
Sbjct: 194 ETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTYYT 253
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+ E + + E+ F V + + D +S + ++SL R + +
Sbjct: 254 PSMDEKMENLFRNIPWVEENFGEVDRFYAVLHVFLEFYDDESWKEVRDRYSLRRNLINEI 313
Query: 296 ISFFNCNFNQKTL-SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ S Y V + FLA ++L++ +
Sbjct: 314 RHVEKSAPALLEMLSERVPASFVYPLVKGVSNETICHFLAYLSGEKEGLFKSYLLKIKNT 373
Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ + G+ +++ GI GK +G +L + ++ + +E L +L
Sbjct: 374 KLEK------INGEYLIRKGITSGKIIGEVLEKILMKKLDGDTRDEEEILEEVL 421
>gi|116331148|ref|YP_800866.1| poly A polymerase family protein [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116124837|gb|ABJ76108.1| Poly A polymerase family of protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 432
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 94/418 (22%), Positives = 176/418 (42%), Gaps = 36/418 (8%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
D+I I + K + ++GG+VRD L++ + D+ T++LPD+++ +F +
Sbjct: 17 FREDIIRITQNIRKEGGECYLIGGSVRDLLLSKIPDEFDLTTSLLPDKILTLFK----RT 72
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALY 128
+PT I +GT+ ++ + + ++ITT R D+ F D RRDFT+NAL
Sbjct: 73 VPTGIKHGTVTVLIQDRSYEITTFRKDVDYIDGRRPEAVKFGVSLSEDLKRRDFTMNALA 132
Query: 129 ADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D + ++ID GL D++N+ I+ IGD R ED LR +R RF + G ++S+
Sbjct: 133 LDLEAKRLIDEHSGLEDIQNKIIRTIGDPIERFTEDGLRPIRAIRFVSSLGF-ALESETA 191
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
A I+ + +S ER+ E+NK L++KNP ++ I + + L
Sbjct: 192 KAIIQCRNITAKISKERVHDELNKTLKSKNPAPSLKLFKEFRILEL----FTSLKLYPTE 247
Query: 248 QVIEAEQVFEWKIDSL------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+++ E + L L + S+QD+ S K + + F +
Sbjct: 248 NTNVEKKIREVPVVPLSLRLSFLHAWLFGSFQDRNSAKQFMKDLRYSNQNTKDSLFFSDM 307
Query: 302 NFNQKTLSIPE------------IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
F Y + + I I + +D
Sbjct: 308 LFMMLNRKDDASLTDAEIRKAVLHPICVYAGRENLRILTEYILNLAYTYEPILKDIFDFR 367
Query: 350 QVLSDIIHWKKP---LFPLTGDDVVKY--GIPPGKKVGNILVHCKQEWINSSFQLSQE 402
++L + L G+D+++ +PP K++G++L + + + ++
Sbjct: 368 RILDLTERSQALVVTELALRGEDILRACPNLPP-KQIGSVLEKLLFHVLENPDENRKD 424
>gi|308234961|ref|ZP_07665698.1| tRNA adenylyltransferase [Gardnerella vaginalis ATCC 14018]
Length = 472
Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 89/460 (19%), Positives = 156/460 (33%), Gaps = 64/460 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ + + L K + +VGG VRD L++ + D+D T+ P+ I
Sbjct: 7 PEAMELGRLFAKHNYELALVGGPVRDMLLHRTSHDLDFCTSAKPEEFEHILRSWGHDGFW 66
Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R+K +ITT R D R +V + + D RRDFT+N
Sbjct: 67 DMGRKFGTLGAVRRRKDGTEVKVEITTYRCDDYEPDSRKPEVKYGDTLEGDLSRRDFTVN 126
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG NDL ++ D +D LR++R RF A G I++
Sbjct: 127 AMALRVPDLEFVDPFGGANDLAKGILRTPVDPRQSFDDDPLRMMRAVRFVAQLGF-TIEA 185
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A + L I+S+ER+ EI K+L + NP I M GI + ++ + L+
Sbjct: 186 NTAEAILDMVSRLDIVSAERVRDEITKMLLSANPRAGIEAMVESGIADRVLPEIPALRLE 245
Query: 245 ----------------QLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKK--------- 276
L + I E E + D LR L+ K
Sbjct: 246 IDEHHRHKDVFEHTMMVLERAIALETDNEGAVPRPDLTLRLAALLHDIGKPRTRKFEEGG 305
Query: 277 -------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLY 320
K I + N + Y+
Sbjct: 306 KVSFHHHDVVGAKMTRKRMKALHFDHHIIDDVSELVNLHLRFHGYVDEPWTDSAVRRYVK 365
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDV 370
+ +L + + Q + ++ + L G+++
Sbjct: 366 DSGHLYERLNRLTRADATTQNKRKSLMFEQAMDEMEERVKELKKQEDFNAIRPDLDGNEI 425
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
++ + PG VG H +++ + L +
Sbjct: 426 MQLLDLKPGPIVGKAYKHMLDYRLDNGPVDHDIAVEELKK 465
>gi|298372295|ref|ZP_06982285.1| polyA polymerase family protein [Bacteroidetes oral taxon 274 str.
F0058]
gi|298275199|gb|EFI16750.1| polyA polymerase family protein [Bacteroidetes oral taxon 274 str.
F0058]
Length = 471
Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 84/460 (18%), Positives = 159/460 (34%), Gaps = 63/460 (13%)
Query: 16 INILSLLNKG----EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK-- 69
I + + ++GG VRD L++ +DIDI + K
Sbjct: 9 EKIFHTIGDFADNVGIECYLIGGYVRDLLLDRGSKDIDIVVVGDGVAFAEGLRRQLGKGT 68
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ +YGT ++ R +I R + +V + D RRDFTINAL
Sbjct: 69 SLAVFRTYGTAQLKTRNGEIEIVGARRESYRHDSRNPIVEEGTLEDDQNRRDFTINALAI 128
Query: 130 D----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
G++ID GG+ DL NR I+ D +D LR++R RF G I +
Sbjct: 129 CLNKKHFGELIDPFGGIEDLGNRLIRTPLDPDITFSDDPLRMMRAIRFATQLGFI-IQDE 187
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
LVA + ++ +KI++ ERI EINK+L + P + G+ I ++ + +
Sbjct: 188 TLVAIWRNRERIKIITKERIADEINKILLSAKPSTGFYLLDKTGLLPLIMPELSALKGVE 247
Query: 246 LSQVIEAEQVFEWKI-----------DSLLRFIVLISWQDKKSILSM---AKKFSLPRE- 290
+ F+ + D LR+ L+ K +
Sbjct: 248 TINGRAHKDNFKHSLQVLDNLAMRSDDLWLRWASLLHDIGKPVTKRWEEARGWTFHSHDF 307
Query: 291 ------------------------IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ L+ ++ T++ +++L + G+ +
Sbjct: 308 VGAKLVKKIFSNLKLPMGEPLRFVQKMVLLHMRPIALSEDTVTDSAVRRLLFDAGND--V 365
Query: 327 AKLKIFLALHYNNLTHQDTCFILQV----------LSDIIHWKKPLFPLTGDDVVK-YGI 375
L + + + L + + P+ G ++++ +G+
Sbjct: 366 DSLMMLCQSDITSNNMKKVKRFADNFELVRRKLVELEEKDRIRNFQPPVDGIEIMQTFGL 425
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
VG + K ++ S ++ L ++
Sbjct: 426 GQCSMVGELKTQIKDAILDGIIPNSHDEAFDYLLQIAKEK 465
>gi|91794520|ref|YP_564171.1| poly(A) polymerase [Shewanella denitrificans OS217]
gi|91716522|gb|ABE56448.1| poly(A) polymerase [Shewanella denitrificans OS217]
Length = 449
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 76/364 (20%), Positives = 135/364 (37%), Gaps = 24/364 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK K+ +VGG VRD L+ L +D D+ T PD + +F R
Sbjct: 19 SENALKVLYRLNKSGYKAYLVGGGVRDILLGLEPKDFDVVTNATPDEIKALFRNCRL--- 75
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R + GR + + D+ RRD
Sbjct: 76 -VGRRFRLAHIVFGRDVIEVATFRGHHGENSDNISKSNAEGRLLRDNVYGEIDEDAERRD 134
Query: 122 FTINALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D I GG DLRN++IK IGD R ED +R+LR RF +
Sbjct: 135 FTVNALYYDISDYSIRSYGGGMDDLRNKSIKMIGDPETRYREDPVRMLRAVRFATKLDMQ 194
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
ID + L + + R++ E+ KL A M G+F +F VQ
Sbjct: 195 -IDPVTAAPITELASLLADIPAARMYEEVLKLFFAGKAEANFELMLKFGLFAPLFPQVQA 253
Query: 241 ISLD-------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
+ + ++ + I D + + + A+ ++ +
Sbjct: 254 LLDESPKGDTARMVRAIMRNTDLRVSQDKPVTPAFFYAAMLWYPLKRRAEDMAMEIGLSA 313
Query: 294 FLISFFNC-NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
+ + ++ I + F + +L++ + + +
Sbjct: 314 YDAHVAAMGDVMEQQCQTISIPRRFSTPAKDIWQLQLRLERGQNTRSFKLFEHPKFRAAY 373
Query: 353 SDII 356
++
Sbjct: 374 DLLL 377
>gi|224532099|ref|ZP_03672731.1| polynucleotide adenylyltransferase [Borrelia valaisiana VS116]
gi|224511564|gb|EEF81970.1| polynucleotide adenylyltransferase [Borrelia valaisiana VS116]
Length = 410
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 93/395 (23%), Positives = 153/395 (38%), Gaps = 18/395 (4%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II
Sbjct: 20 NNYEFYLVGGALRDLLLNKQPCDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75
Query: 85 RKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141
KK F+ITT R + + A +T++ D RRDFTINA+ D +IDY G
Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKKVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDYYDG 135
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
DL + I+ IG+ + R ED LRILR RF + + + K + L I
Sbjct: 136 KKDLNKKIIRCIGNPNKRFEEDALRILRAARFSSTLNFNIEKNTLISMKYKKENILIISK 195
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+KLLE N I ++ FK +L+ +++I+ +
Sbjct: 196 ERIKNE-FHKLLEGTNIQKGIYYLKKVDFFKNF------FNLEIKTKLIKKTALLNKDKF 248
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L +L + K + + ++ + + N ++ ++ + YL
Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRSIIDNNNIFNVKKLSDIRYLLS 308
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPP 377
+I + FI + + K P + G D+
Sbjct: 309 KSTREHYKEIIDIHKALKGKKKKYLFITKNIKRKKLLKSPLSLKDLKINGKDIQNLKQIE 368
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K +G IL I + ++ L ++ L
Sbjct: 369 NKNIGKILNILLSYVIENPKLNNKNYLIKKIKTLK 403
>gi|183602655|ref|ZP_02964019.1| probable RNA nucleotidyltransferase [Bifidobacterium animalis
subsp. lactis HN019]
gi|241191621|ref|YP_002969015.1| RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241197026|ref|YP_002970581.1| RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|183218073|gb|EDT88720.1| probable RNA nucleotidyltransferase [Bifidobacterium animalis
subsp. lactis HN019]
gi|240250013|gb|ACS46953.1| RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|240251580|gb|ACS48519.1| RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|295794613|gb|ADG34148.1| RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis
V9]
Length = 502
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 84/459 (18%), Positives = 159/459 (34%), Gaps = 66/459 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + + + +VGG VRD L++ D+D + P++ I +
Sbjct: 37 PEAIELGQMFADEGFELALVGGPVRDLLLHRRSHDLDFCSNARPEQFEPILRRFGHDGFW 96
Query: 72 PTSISYGTIKIICR-----KKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R + ++TT RSD D R +V + + D RRDFT+N
Sbjct: 97 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDVYDPDSRKPEVSYGDSLEGDLSRRDFTVN 156
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG NDL R ++ D + +D LR++R RF A G +I+
Sbjct: 157 AMALTVPDLEFVDPFGGANDLNKRVLRTPVDPYQSFDDDPLRMMRAVRFVAQLGF-SIEP 215
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A + ++I+S+ER+ E+ KLL + P I + + G+ + ++ + L+
Sbjct: 216 ETAEAITRMTDRIEIVSAERVRDELTKLLLSDRPRAGIEALVDSGLADVVLPEIPALRLE 275
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
+ + + VF+ D +LR L+ K
Sbjct: 276 -IDEHHRHKDVFDHTMIVVDRAVALETGPDGPVPAPDLVLRLAALMHDIGKPKTRRFEPG 334
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTL-SIPEIKKLFYLYG 321
K + + + + P Y
Sbjct: 335 GKVSFHHHDAVGAKMTRKRLKALRFDHHVVEQVSDLVDLHLRFHGYVDEPWTDAAVRRYV 394
Query: 322 DKV--MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
+ A+L + + ++ L GD+
Sbjct: 395 KDAGPLYARLNRLTRADATTQNRRKALMFEHAMDEMEERVAKLKEQEDIDAIRPDLNGDE 454
Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
++ + GI PG VG H + +++ + L
Sbjct: 455 IMAELGIAPGPLVGKAYRHMLEYRLDNGPVDHDTAVAEL 493
>gi|329929733|ref|ZP_08283409.1| putative tRNA adenylyltransferase [Paenibacillus sp. HGF5]
gi|328935711|gb|EGG32172.1| putative tRNA adenylyltransferase [Paenibacillus sp. HGF5]
Length = 432
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 95/367 (25%), Positives = 160/367 (43%), Gaps = 17/367 (4%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
++ L + ++ VGG VRD M V D+DI T+ LP+ +F KVIPT I +
Sbjct: 24 VIRTLLRHGHEAYWVGGCVRDEYMGRRVSDMDITTSALPEVTCSVFP----KVIPTGIKH 79
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYADQQGKV 135
GT+ ++ + F++TT R + + F + K D RRDFT+NA+ G
Sbjct: 80 GTVTVLMEGQSFEVTTYRVESGYEDHRHPTEVAFVGEVKEDLRRRDFTMNAMARGIDGSW 139
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
+D GG D+ + I+ +GDA R ED LR++R RF + +G +I + +
Sbjct: 140 VDPFGGREDIDRKVIRCVGDARLRFREDALRMVRCIRFASVFGF-SIALRTWRGILSERD 198
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ--LSQVIEAE 253
L ++ ERI SE K+L +PL + G+ + + D+ + + E
Sbjct: 199 TLGWIAMERIRSEFEKILAGPSPLRGLEMFVRSGLHSRMKAPFPYTTHDRKTIEAMERIE 258
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313
SLL I+ Q+ + +L + RE L+S Q E
Sbjct: 259 PDHAMIRWSLLLLACGITAQEAEELLRSWTFSNKQRESIVKLLSLHESYLQQPNAGDAES 318
Query: 314 KKLFYL-----YGDKVMIAKLKIFLALHYNNLTHQDTCFILQ---VLSDIIHWKKPLFPL 365
+L ++ +G + L++ ALH+ + FI Q L D+ +
Sbjct: 319 SRLKWIGLVLAHGVEAAQGWLEMQTALHHTGASSAPLTFIRQFDVWLQDLRIRSLKDLAI 378
Query: 366 TGDDVVK 372
TG ++++
Sbjct: 379 TGSELLE 385
>gi|120597644|ref|YP_962218.1| poly(A) polymerase [Shewanella sp. W3-18-1]
gi|146294217|ref|YP_001184641.1| poly(A) polymerase [Shewanella putrefaciens CN-32]
gi|120557737|gb|ABM23664.1| poly(A) polymerase [Shewanella sp. W3-18-1]
gi|145565907|gb|ABP76842.1| poly(A) polymerase [Shewanella putrefaciens CN-32]
Length = 494
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 102/241 (42%), Gaps = 16/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK K+ +VGG VRD L+ L +D D+ T P+ + ++F R
Sbjct: 75 SENALKVLYRLNKSGFKAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRNCRV--- 131
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R +GR + + D+ RRD
Sbjct: 132 -VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKISKANAEGRLLRDNVYGEIDEDAERRD 190
Query: 122 FTINALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D I GG DL+ T++ IGD R ED +R+LR RF
Sbjct: 191 FTVNALYYDISDYSIRSYGGGMADLKAGTLRLIGDPETRYREDPVRMLRAVRFATKLSM- 249
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
NI+ + L + + R++ E+ KL A L M +F +F V
Sbjct: 250 NIEDVTAKPIKQLAPLLTDIPAARMYEEVLKLFFAGKALANFEMMQEYKLFAPLFPQVDA 309
Query: 241 I 241
+
Sbjct: 310 L 310
>gi|325955576|ref|YP_004239236.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Weeksella virosa DSM 16922]
gi|323438194|gb|ADX68658.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Weeksella virosa DSM 16922]
Length = 473
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 76/446 (17%), Positives = 155/446 (34%), Gaps = 56/446 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFSKTRY 68
+D I I + + KS +VGG VRD L+ + DID T + +K
Sbjct: 7 INDPIFITIGETAKELKQKSYVVGGFVRDFLLERPGKQDIDFVTVGNGIILAEKVAKKLG 66
Query: 69 KV--IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +GT + K + R + ++ V + D RRDFTINA
Sbjct: 67 NTSKVSVFKRFGTAMFKYQNKELEFVGARKESYSEDSRKPFVENGTLEDDQKRRDFTINA 126
Query: 127 LYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L + +ID G+ DL ++ I+ D +D LR++R RF A +I
Sbjct: 127 LAISLNHEDFGQLIDPFDGIQDLEDKIIRTPLDPVITYSDDPLRMMRAIRFAAQLDF-SI 185
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ A + L+I+S ER+ E NK++ + P ++ + + I ++
Sbjct: 186 EEKSFRAIQENAHRLEIVSKERVMDEFNKIMLTQKPSKGLLLLDQANLLPLILPELCALK 245
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM-----AKKFS 286
++ + + + + + + LR+ L+ K S
Sbjct: 246 GVEDIDGKKHKDNFYHTLEVVDNIAKNTENLWLRWAALLHDIGKAVTKKFDPKVGWTFHS 305
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AK 328
F + ++KL + + +
Sbjct: 306 HEYVGAKMTYKLFKRLKLPLGQDLKYVQKLVMMSSRPIAVISDEATDSALRRLLFDASDD 365
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDII-------------HWKKPLFPLTGDDVVK-YG 374
L + L ++T ++ + + + + P++G+++++ +
Sbjct: 366 LDDLMVLCKADITTKNEKKQKRYIRNFELVEQKIKDVEERDRIRNFQPPISGEEIMEVFD 425
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLS 400
+ P K++G I K + + +
Sbjct: 426 LQPCKEIGVIKTAIKDAILEGEIENN 451
>gi|307826250|ref|ZP_07656459.1| poly(A) polymerase [Methylobacter tundripaludum SV96]
gi|307732712|gb|EFO03580.1| poly(A) polymerase [Methylobacter tundripaludum SV96]
Length = 467
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 64/239 (26%), Positives = 101/239 (42%), Gaps = 15/239 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +L L K + +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 50 SEHALKVLYRLQKEGFDAYLVGGCVRDLLLGREPKDFDVVTNADPDQVRKVFRNCRL--- 106
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------GRYAKVVFTRDWKADSLRRDF 122
+ + ++ ++ T R GR + + D RRDF
Sbjct: 107 -IGRRFRLAHVHFGREIIEVATFRGAGEEQNDKQVLNKEGRLLRDNVYGTIEEDVWRRDF 165
Query: 123 TINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T+NALY + V+DYVGG+ D + T+K IGD R ED +R+LR RF G K
Sbjct: 166 TVNALYYNIKDFSVVDYVGGMADHKTGTLKLIGDPEMRFREDPVRMLRAVRFAVKLGFKL 225
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+ + I S R++ E KL + L + + G+F+ +F +
Sbjct: 226 DSACEKAIHNDVQLLASIPS-ARLYDEALKLFLSGYALQTFEMLRHYGLFQVLFPSTEN 283
>gi|237746883|ref|ZP_04577363.1| poly(A) polymerase [Oxalobacter formigenes HOxBLS]
gi|229378234|gb|EEO28325.1| poly(A) polymerase [Oxalobacter formigenes HOxBLS]
Length = 461
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 77/361 (21%), Positives = 149/361 (41%), Gaps = 18/361 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I ++ +L+ K+ IVGGAVRD L+ L +D D+AT P++V R+F +
Sbjct: 36 LVSNSAIRVVRILHNAGYKAFIVGGAVRDLLLGLKPKDFDVATDATPEQVKRLFRRA--- 92
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD------GRYAKVVFTRDWKADSLRRDFT 123
+ + ++ ++ ++TT R GR + + D+ RRDFT
Sbjct: 93 -FVIGRRFQIVHVLLGQELIEVTTFRGSSTKPALKDDAGRLLRDNSFGTQEEDAARRDFT 151
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
INA+Y + ++DY GG+NDLRNRT+K IGD R ED +R+LR RF A G +I
Sbjct: 152 INAMYYNPANQLLLDYHGGMNDLRNRTLKIIGDPEQRYREDPVRMLRIVRFAAKLGF-SI 210
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D + + S R++ E+ KLL + + ++ + + G+ K + + +++
Sbjct: 211 DPATRAPIASLAPLINNVPSARLFDEMLKLLMSGHAMSCLKELRTRGLHKGLLP-LLDVA 269
Query: 243 LDQLSQVIEAEQVFEWKIDSL-----LRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
L+Q E + + + L + + + + E +
Sbjct: 270 LEQPQAAHFIELALDKTDQRIRENRRISPGFLFATLLWTQVEEKWEHYRAQGEHPIPALV 329
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
+ + I++ + + + ++ + + ++
Sbjct: 330 AAAGDILETQTEKLAIQRRIASDMKDIWLMQPRLERRTGKSAYRLLENERFRAAYDFLLI 389
Query: 358 W 358
Sbjct: 390 R 390
>gi|300309964|ref|YP_003774056.1| tRNA nucleotidyltransferase/poly(A) polymerase [Herbaspirillum
seropedicae SmR1]
gi|300072749|gb|ADJ62148.1| tRNA nucleotidyltransferase/poly(A) polymerase protein
[Herbaspirillum seropedicae SmR1]
Length = 534
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 12/223 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + K+ IVGGAVRD L+ + +D D+AT P++V ++F +
Sbjct: 57 LVSPNAVRVTQTLQEAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFI- 115
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFT 123
+ + ++ ++ ++TT R GR + + D+ RRDFT
Sbjct: 116 ---IGRRFQIVHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFT 172
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
INA+Y D V+DY GG+ D+R++ ++ IG+ R ED +R+LR RF A + I
Sbjct: 173 INAMYYDPASQAVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKL-KFTI 231
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
D + + + R++ E+ KLL + + L + +
Sbjct: 232 DPASSAPIRVMAPLIDNVPAARVFDEMLKLLMSGHALACLQQL 274
>gi|78187013|ref|YP_375056.1| polyA polymerase family protein [Chlorobium luteolum DSM 273]
gi|78166915|gb|ABB24013.1| polyA polymerase family protein [Chlorobium luteolum DSM 273]
Length = 475
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 77/456 (16%), Positives = 159/456 (34%), Gaps = 59/456 (12%)
Query: 13 SDLI-NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKV 70
D++ I + ++ + +VGG VRD LM DIDI P + K +
Sbjct: 6 PDILFRIGEIADRSQMGCYLVGGYVRDMLMQRPCTDIDIMVLGDPVPFAKTVQKELGGRN 65
Query: 71 IPTSISYGTIKIICRK-----KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ T ++ ++ R + + + D RRDFTIN
Sbjct: 66 FVLFERFRTARLELPDPEGATFTLELVGARKESYNHDSRKPITLKGTLEDDLSRRDFTIN 125
Query: 126 ALYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
AL + ++D G DL + ++ +D LR++R RF A G
Sbjct: 126 ALALVLNHEGRGTIVDQHCGREDLEKKILRTPLAPLQTYSDDPLRMMRTARFAAQLGFTP 185
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ + ++I+S+ER SE K++++ P + ++ G+ EI + +
Sbjct: 186 APEAVAAMAT-MHERIRIVSAERTSSEFLKIMQSPEPSVGLKLLHETGVLAEILPETAAM 244
Query: 242 -SLDQLSQVIEAEQVFEW----------KIDSLLRFIVLISWQDKKSILSMAKK------ 284
++Q+ + + ++ D LR L+ K +K
Sbjct: 245 AGIEQIDGLGHKDTLYHTFQVVDNVARASQDLWLRIAALLHDVAKPQTKRFSKHAGWTFH 304
Query: 285 ----------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
P++ ++ + LS EI
Sbjct: 305 GHDAVGVRAAARIFREMRWPQDRLVYVQKMIRMHHRPIPLSKEEITDSAIRRLMFDAGED 364
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVV-KYG 374
L+ + L ++T ++ + +++ + + +K P+ G +++ +
Sbjct: 365 LEDLMTLCRADVTSKNPRKVARIMQNFGNVEKKIAEVGEKDLLAKWRPPVDGLEIMQELQ 424
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+P G+ VG I + I+ + +E +R+
Sbjct: 425 LPEGRMVGMIKKEMENAIIDGTLPYEREAALEYVRE 460
>gi|298736336|ref|YP_003728862.1| polynucleotide adenylyltransferase PapS [Helicobacter pylori B8]
gi|298355526|emb|CBI66398.1| Polynucleotide adenylyltransferase(PapS) [Helicobacter pylori B8]
Length = 392
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 74/393 (18%), Positives = 133/393 (33%), Gaps = 25/393 (6%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
+ K + +VGG VRD LM ++ +D D+ + L + + K ++V+ T I +G
Sbjct: 2 FDIYEKSPHELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHFRVLETGIKHG 61
Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYADQQGKVI 136
TI + + ++ITT R + F+ D RRDF++NA+ +I
Sbjct: 62 TITALKNHQSYEITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNAIAYSPTKGLI 121
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
D G + + N+ I+ +G A R ED LRILR RF A G K S
Sbjct: 122 DPFKGRSAIENQMIECVGGARLRFFEDALRILRALRFSATLGFKIAPS------------ 169
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
+ + L + + + ++ + + L ++ +
Sbjct: 170 -TKRAVFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVTQEKIENLGFLK 228
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+ LR + P++ C+ + K
Sbjct: 229 NAPFNLELR------LLGFFKHQKSLENLRYPKKTCVLFSKAKECHKAFLNIHNKTELKF 282
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376
D F AL + + ++ +KK L G+ +
Sbjct: 283 LLKNYDLEPFNLALDFYALENPKHALKIKRLLKEIFDSNEPFKKEHLALKGNALQSLDYQ 342
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+++G IL C I L L++
Sbjct: 343 H-QQIGEILNACLNLVIAHPKNN---ALEWLIK 371
>gi|227553358|ref|ZP_03983407.1| possible tRNA CCA-pyrophosphorylase [Enterococcus faecalis HH22]
gi|227177509|gb|EEI58481.1| possible tRNA CCA-pyrophosphorylase [Enterococcus faecalis HH22]
Length = 241
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 58/169 (34%), Positives = 96/169 (56%), Gaps = 6/169 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
G++ID G+ DL N+TI+ +G+ H R ED LR++R RF +
Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDF 175
>gi|325125950|gb|ADY85280.1| poly(A) polymerase [Lactobacillus delbrueckii subsp. bulgaricus
2038]
Length = 351
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 87/362 (24%), Positives = 149/362 (41%), Gaps = 16/362 (4%)
Query: 49 DIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAK 106
DIAT+ P+ V F+K+ I T I +GT+ ++ ++ITT R++ R K
Sbjct: 2 DIATSAYPEEVKETFAKS----IDTGIQHGTVTVLYGGSSYEITTFRTESGYQDFRRPDK 57
Query: 107 VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166
V F ++ D RRDFTINAL ++QG++ID GL DL+ R IK +G A R ED LR
Sbjct: 58 VTFVQNLDEDLKRRDFTINALAMNRQGEIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALR 117
Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226
++R RF + +++ A I + L +S ERI E KL K+ A +
Sbjct: 118 MMRAVRFMSQLSF-SLEEKTRQAIINNHELLSKISVERIREEFVKLALGKDSRQAFKD-F 175
Query: 227 NGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286
E + DQLS + + + + + I ++ I + +
Sbjct: 176 LATGLSEECPGL-AGKKDQLSVLTDLKAGPDDEAVFW-SLIAVLINLPADKISPFMRAWK 233
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346
+ + + + G + + A LK+ L +
Sbjct: 234 NSNAMNQQVRQIVAAFDLLSRGEESDFD--LFEIGQENLEAALKLAGLL----GKPLSSQ 287
Query: 347 FILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
+L + + + G ++K GI P ++G +L + ++ + SQ +
Sbjct: 288 VLLDRYNRLPIKAAGELAIDGQWLIKEGIKPSPELGQLLRKALEGVVSGQVENSQAAIAE 347
Query: 407 LL 408
L
Sbjct: 348 FL 349
>gi|24372461|ref|NP_716503.1| polyA polymerase [Shewanella oneidensis MR-1]
gi|24346447|gb|AAN53948.1|AE015532_8 polyA polymerase [Shewanella oneidensis MR-1]
Length = 438
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 64/241 (26%), Positives = 102/241 (42%), Gaps = 16/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ L +D D+ T P+ + ++F R
Sbjct: 17 SENALKVLYRLNKAGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRNCRV--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R +GR + + D+ RRD
Sbjct: 74 -VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKISKANAEGRLLRDNVYGEIDEDAERRD 132
Query: 122 FTINALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D I GG DL+ T++ IGD R ED +R+LR RF
Sbjct: 133 FTVNALYYDISDYSIRSYGGGMEDLKAGTLRLIGDPETRYREDPVRMLRAVRFATKLSM- 191
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
ID + LK + + R++ E+ KL A + M +F +F V
Sbjct: 192 TIDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAVANFDMMQEYKLFAPLFPQVDA 251
Query: 241 I 241
+
Sbjct: 252 L 252
>gi|319786655|ref|YP_004146130.1| poly(A) polymerase [Pseudoxanthomonas suwonensis 11-1]
gi|317465167|gb|ADV26899.1| poly(A) polymerase [Pseudoxanthomonas suwonensis 11-1]
Length = 478
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 14/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + + +VGGAVRD L+ + +D D+AT P++V ++F R
Sbjct: 61 SPNALRVLYRLREAGFGAYLVGGAVRDLLLGMHPKDFDVATDATPEQVKQLFRNCRL--- 117
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT--------DGRYAKVVFTRDWKADSLRRDFT 123
+ ++ ++ ++ T R+++ DGR + + D++RRDFT
Sbjct: 118 -IGRRFRLAHVVYGREIIEVATFRANVDDGSGDREVEDGRLVRDNVYGTIEDDAVRRDFT 176
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DY GG D+ R ++ IGD R ED +R+LR R A G +I
Sbjct: 177 CNALYYAIEDFSVRDYTGGYEDVLARKMRLIGDPETRYREDPVRMLRAVRLAAKLGF-SI 235
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
D + L + R++ E+ KL + + + + + G+ + +
Sbjct: 236 DPPTAEPIPRLAGLLAEAAPARLFEEMLKLFLSGHAVASFEGLERHGLLGALMPE 290
>gi|21673818|ref|NP_661883.1| polyA polymerase family protein [Chlorobium tepidum TLS]
gi|21646950|gb|AAM72225.1| polyA polymerase family protein [Chlorobium tepidum TLS]
Length = 475
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 80/457 (17%), Positives = 151/457 (33%), Gaps = 58/457 (12%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM-RIFSKTRYKVIPTSI 75
I L ++ IVGG VRD +M DIDI P + K +
Sbjct: 15 RIGDLADETGLPCYIVGGYVRDLIMQRPCTDIDIMVIGEPVPFAHALAEKLGGRNFVLFE 74
Query: 76 SYGTIKIICRK-----KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ T ++ +I R + + + D RRDFTINAL
Sbjct: 75 RFRTAQLELDDPKAGTFKLEIVGARKESYNPESRKPITSIGTLEDDLSRRDFTINALALR 134
Query: 131 QQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+V+D G +R + +K D +D LR++R RF + ++
Sbjct: 135 LNRKERGEVVDLFDGQRHIREKLLKTPLDPEQTFSDDPLRMMRAARFACQLDFQLDEATL 194
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ- 245
S ++I+S ER+ E K++EA+ P + +Y+ G+ KEI ++ ++ +
Sbjct: 195 TAMST-MSSRIQIVSRERVSHEFFKIMEARKPSIGLKILYSTGLLKEIIPELTVMAGIEQ 253
Query: 246 ----------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK------------ 283
+ + E LR L K
Sbjct: 254 VDGLGHKDTLFHTFQVVDNLAEHSDKLWLRVSALFHDIAKPVTKRFHPGSGWTFHGHEAV 313
Query: 284 ----------KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333
P E ++ + LS EI L +
Sbjct: 314 GVKIVARIFRAMKWPLEPMEYVQKMVRLHHRPIPLSKEEITDSAVRRLMFDAGPDLDDLM 373
Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGIPPGK 379
L ++T ++ + +++ + + + P++G D+++ +P G+
Sbjct: 374 TLCRADVTSKNPRKVQRIMKNFSNVEAKIAEVGEKDLLAKWRPPVSGTDIMELLNLPQGR 433
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
VG I + I+ ++ ++++ Q
Sbjct: 434 TVGIIKSRMENAIIDGDIPYDRQAALDYIQQVYREMQ 470
>gi|189346518|ref|YP_001943047.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Chlorobium limicola DSM 245]
gi|189340665|gb|ACD90068.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Chlorobium limicola DSM 245]
Length = 471
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 79/460 (17%), Positives = 158/460 (34%), Gaps = 59/460 (12%)
Query: 13 SDLI-NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKV 70
D++ I L ++ +VGG VRD L+ DIDI P RI R K
Sbjct: 10 PDILFRIGELADRENIPCYLVGGYVRDILIERPCTDIDIMIVGEPVAFARIIRNELRGKN 69
Query: 71 IPTSISYGTIKIICRKKY-----FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ T ++ ++ ++ R + + D RRDFTIN
Sbjct: 70 FVVFERFRTAQLELTDEHAGALKIEVVGARKESYDLDSRKPFTEIGTIEDDLSRRDFTIN 129
Query: 126 ALYADQQGKV----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
AL D GL DL R ++ + +D LR++R RF + G
Sbjct: 130 ALAVSLNSDKRGSLTDNYNGLGDLERRILRTPLEPEQTFSDDPLRMMRAARFVSQLGFTP 189
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ + ++I+S ERI E K++ + P + +Y+ I +I +V +
Sbjct: 190 DPALAEAMK-AMHERIRIVSRERISQEFFKIMLSPEPSRGLEMLYDTKILGDILPEVTAM 248
Query: 242 SLDQ-----------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFS 286
+ + + + LR L+ K F
Sbjct: 249 AGIEQVDGLGHKDTLFHTFQVVDNLSRHSDKLWLRIAALLHDIAKPVTKRFHPSTGWTFH 308
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK------------------ 328
+ +++ + + ++K+ L+ + ++K
Sbjct: 309 GHEAVGIKVVAKIFRSMRWPLEPLDYVQKMVRLHHRPIPLSKEEITDSAIRRLMFDAGPD 368
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVV-KYG 374
L+ + L ++T ++ +++++ + + ++ P+ G D++ G
Sbjct: 369 LEDLMNLCRADVTSKNPRKVVRIMKNFENVEQKIAEVAEKDLLASWRPPIDGSDIMTTLG 428
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ GK +G I + I+ +E +RK+
Sbjct: 429 LTEGKMIGIIKSRMENAIIDGLIPYEREAALTYIRKVYEE 468
>gi|325203914|gb|ADY99367.1| poly(A) polymerase [Neisseria meningitidis M01-240355]
Length = 445
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 32 AAENVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 87
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 88 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 147
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R G ++ +
Sbjct: 148 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-DLSEETAA 206
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 207 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 259
>gi|328955695|ref|YP_004373028.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Coriobacterium glomerans PW2]
gi|328456019|gb|AEB07213.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Coriobacterium glomerans PW2]
Length = 492
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 79/451 (17%), Positives = 152/451 (33%), Gaps = 65/451 (14%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+L L + + K+ VGG VRD+L+ DIDI + +V+
Sbjct: 27 SDAASTVLRALEETDLKAWFVGGWVRDALLGSESHDIDICCSGSWQSNAAALRAAGIEVL 86
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129
T +S+G I + ++T+ R D DGR+ ++ + D RRD T+NA+
Sbjct: 87 ETGVSFGGITAVIAHDRVEVTSYRIDGDYVDGRHPVRIERAGSIEDDLARRDLTVNAMAW 146
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ +ID G DL R I+ +G A R ED LR+LR RF +D + A
Sbjct: 147 HPERGLIDLFDGRGDLARRVIRAVGIARERFEEDALRMLRAVRFACSLDF-KMDFETDEA 205
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
LK +S++R+ SE++++L + +A+ ++ + ++ +
Sbjct: 206 IRACAPLLKAISAQRVGSELDRILASGRGGDALA--HHPALMCVAIPELARLRGFDQRSR 263
Query: 250 IEAEQVFEWK-----------------------IDSLLRFIVLISWQDKKSIL------- 279
V++ +D L + L+ K
Sbjct: 264 YHDFDVYDHTARVLTVASELALASDTDGGALSALDPALMWAALLHDIAKPETFTLDRDGQ 323
Query: 280 ---------------SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK- 323
+ + + PR++ + ++ L
Sbjct: 324 GHFFGHPELGADLAGRIMGRLARPRDVVRDACLLIRYHDRPMRPDRSDLLGAMALMSRPG 383
Query: 324 -----VMIAKLKIFLALHYNNLT---------HQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+M + A + + ++L+ + + G D
Sbjct: 384 ADTAHIMDELFDLKRADTLGKAPSCFCYVDEIERMREMVHELLAHREAYSLATLSINGGD 443
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400
+++ G+ PG +G +L I
Sbjct: 444 LIRVGVEPGPPIGTLLREALAATIAGKVDND 474
>gi|119026636|ref|YP_910481.1| RNA nucleotidyltransferase [Bifidobacterium adolescentis ATCC
15703]
gi|118766220|dbj|BAF40399.1| probable RNA nucleotidyltransferase [Bifidobacterium adolescentis
ATCC 15703]
Length = 472
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 85/466 (18%), Positives = 160/466 (34%), Gaps = 67/466 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + + + +VGG VRD L++ D+D T+ P++ I +
Sbjct: 7 PEAIELGRMFAAEGYELALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGHDGFW 66
Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R++ ++TT RSD R +V + + D RRDFT+N
Sbjct: 67 DMGRKFGTLGAMRRREDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 126
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + + +D GG NDL ++ D +D LR++R RF A G I+
Sbjct: 127 AMALRVPELEFVDPFGGANDLAKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGF-RIEP 185
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A ++I+S+ER+ E+ KLL + P I + + G+ + ++ + L+
Sbjct: 186 ETAEALSDMVDRIEIVSAERVRDELVKLLLSDRPRAGIEALVDSGLADIVLPEIPALQLE 245
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
+ + + VFE D LR L+ K
Sbjct: 246 -IDEHHRHKDVFEHTMIVIERAVALETGSDGPVPAPDLTLRLAALLHDIGKPKTRRFEAG 304
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
K + + N +
Sbjct: 305 GKVSFHRHDAVGAKMTRKRLKALHFDHHMVEDVSELVNLHLRFHGYVEEPWTDSAVRRYV 364
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCF-------------ILQVLSDIIHWKKPLFPLTGDD 369
K + L + T Q+ ++ L + + L GD+
Sbjct: 365 KDAGPLYERLNRLTRADTTTQNKRKAMMFSAAMDEMEQRVRDLKEKEDFDAIRPDLNGDE 424
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+++ I PG VG H + +++ + ++ L +
Sbjct: 425 IMQLLSIEPGPMVGKAYKHMLEYRLDNG-PVERDVAVAELERWYKE 469
>gi|149924374|ref|ZP_01912741.1| Polynucleotide adenylyltransferase region [Plesiocystis pacifica
SIR-1]
gi|149814762|gb|EDM74334.1| Polynucleotide adenylyltransferase region [Plesiocystis pacifica
SIR-1]
Length = 408
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 91/410 (22%), Positives = 160/410 (39%), Gaps = 19/410 (4%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S ++ +L L++ +VGGAVRD+L+ D D+A+ P+ V+ +F K IP
Sbjct: 8 SAILAVLRTLDEAGFHGVVVGGAVRDALLGRDGGDWDVASNATPEEVIELFP----KTIP 63
Query: 73 TSISYGTIKIIC----RKKYFDITTLRSDLITD-GRYAKVVFT-RDWKADSLRRDFTINA 126
T + +GT+ ++ + ++TT R + GR V RD D RRD TINA
Sbjct: 64 TGLEHGTVTVLSGRGEDRHAVELTTFRGEGAYHDGRRPSEVRFLRDLTEDLARRDLTINA 123
Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
L D + D GGL D+R I+ +G+ R ED LR +R RF A G
Sbjct: 124 LAWDPVNAVLTDAFGGLEDMRAGLIRAVGEPERRFNEDGLRTMRAVRFAATMGFALAPET 183
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ + +S ER+ E+ KLL A P + M G++ + L + +
Sbjct: 184 EAAIAGALEVF-AKVSRERVRVELVKLLRAPKPSLGLEPMVRTGLWAHVLLPLDDADQAA 242
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
++ + L + I + + RE R +++ + +
Sbjct: 243 AIAAVDRLPPRPMLRLTRLLAPARHGADGRARIEATVEALKPSREERARVLALTHPRVDA 302
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII--HWKKPLF 363
++ + +A L +L D ++ + +
Sbjct: 303 LAEALAAED----AVAARRCVAALTRTYLEDAADLLELDAAARDRLGAALEGAALTGKEL 358
Query: 364 PLTGDDVVKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ G D+++ G+ PG +G +L + + +E L R L
Sbjct: 359 AIQGRDLIQAGVAKPGPALGKLLAALLDWVLEDPARNHREALLDQARSLA 408
>gi|219684016|ref|YP_002470399.1| tRNA adenylyltransferase [Bifidobacterium animalis subsp. lactis
AD011]
gi|219621666|gb|ACL29823.1| tRNA adenylyltransferase [Bifidobacterium animalis subsp. lactis
AD011]
Length = 472
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 84/459 (18%), Positives = 159/459 (34%), Gaps = 66/459 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + + + +VGG VRD L++ D+D + P++ I +
Sbjct: 7 PEAIELGQMFADEGFELALVGGPVRDLLLHRRSHDLDFCSNARPEQFEPILRRFGHDGFW 66
Query: 72 PTSISYGTIKIICR-----KKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R + ++TT RSD D R +V + + D RRDFT+N
Sbjct: 67 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDVYDPDSRKPEVSYGDSLEGDLSRRDFTVN 126
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG NDL R ++ D + +D LR++R RF A G +I+
Sbjct: 127 AMALTVPDLEFVDPFGGANDLNKRVLRTPVDPYQSFDDDPLRMMRAVRFVAQLGF-SIEP 185
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A + ++I+S+ER+ E+ KLL + P I + + G+ + ++ + L+
Sbjct: 186 ETAEAITRMTDRIEIVSAERVRDELTKLLLSDRPRAGIEALVDSGLADVVLPEIPALRLE 245
Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKK-------- 276
+ + + VF+ D +LR L+ K
Sbjct: 246 -IDEHHRHKDVFDHTMIVVDRAVALETGPDGPVPAPDLVLRLAALMHDIGKPKTRRFEPG 304
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTL-SIPEIKKLFYLYG 321
K + + + + P Y
Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHVVEQVSDLVDLHLRFHGYVDEPWTDAAVRRYV 364
Query: 322 DKV--MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
+ A+L + + ++ L GD+
Sbjct: 365 KDAGPLYARLNRLTRADATTQNRRKALMFEHAMDEMEERVAKLKEQEDIDAIRPDLNGDE 424
Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
++ + GI PG VG H + +++ + L
Sbjct: 425 IMAELGIAPGPLVGKAYRHMLEYRLDNGPVDHDTAVAEL 463
>gi|332521230|ref|ZP_08397688.1| Polynucleotide adenylyltransferase region [Lacinutrix algicola
5H-3-7-4]
gi|332043323|gb|EGI79520.1| Polynucleotide adenylyltransferase region [Lacinutrix algicola
5H-3-7-4]
Length = 472
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 79/459 (17%), Positives = 161/459 (35%), Gaps = 62/459 (13%)
Query: 10 FHDSDLIN--ILSLLNKGEDKS----CIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRI 62
+ + I ++++ + ++GG VRD L+ + +DIDI + +
Sbjct: 1 MNHKKALKHNIFKIISQSAKELNLDSYVIGGFVRDYLLQRGNAKDIDIVAVGSGIALAKQ 60
Query: 63 FSKT--RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+K + +YGT + + R + + VV + D RR
Sbjct: 61 VAKNLPNKPKVQVFKTYGTAMLKYNDIEVEFVGARKESYNENSRNPVVENGTLQDDQNRR 120
Query: 121 DFTINALYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
DF+INAL D D G+ DL+N+ I+ D +D LR++R RF
Sbjct: 121 DFSINALALDLSQDNFGDLLDPFNGVEDLQNKIIRTPLDPDITYSDDPLRMMRAIRFATQ 180
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
G I+ + L A + +KI++ ERI E+NK+LE+K P + + G+ K I
Sbjct: 181 LGF-TIEKESLDAITRNNNRIKIITKERIVVELNKILESKTPSIGFLLLEQTGLLKHILP 239
Query: 237 DV-----------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA--- 282
++ Q + + + + + D LR+ L+ K +
Sbjct: 240 ELTALKGIDEVEGQRHKDNFYHTLEVVDNIAKHTDDVWLRWAALLHDIGKAPTKKFSKKV 299
Query: 283 -KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI--------------- 326
F ++ + + + ++
Sbjct: 300 GWTFHAHEFEGSKMVYHLFKRLKMPLNEKMKFVQKLVFMSSRPIVLAQDIVTDSAVRRLV 359
Query: 327 ----AKLKIFLALHYNNLTHQDTCFILQVLSDIIH-------------WKKPLFPLTGDD 369
+ + L ++T ++ + ++ + P+TG++
Sbjct: 360 FDAGDYVDDLMTLCEADITTKNPKKFNKYHNNFKIVREKIIEVEEKDSIRNFQPPVTGEE 419
Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
++K + + P +++G I K+ + E +L
Sbjct: 420 IMKTFNLKPSREIGIIKEAIKEAILEGEIPNEHEAAFNL 458
>gi|85711815|ref|ZP_01042871.1| Poly(A) polymerase [Idiomarina baltica OS145]
gi|85694430|gb|EAQ32372.1| Poly(A) polymerase [Idiomarina baltica OS145]
Length = 454
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 58/248 (23%), Positives = 103/248 (41%), Gaps = 25/248 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ + +D D+ T P++V ++F R
Sbjct: 31 SDNALKVLYRLHNSGFEAYLVGGCVRDLLLGIQPKDFDVTTNATPEQVKKLFRNCRL--- 87
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYA-------------------KVVFTRD 112
+ I+ K ++ T R D A +
Sbjct: 88 -VGRRFRLAHIVFGKDIIEVATFRGHHKEDDSEAASQTRKQPTAKTDEQGFLVRDNVYGS 146
Query: 113 WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171
+ D+ RRDFT+NA+Y + + D+ GG DL I+ IGDA R ED +R+LR
Sbjct: 147 IEEDAERRDFTVNAMYYNIADFCIYDFAGGKKDLDAGVIRLIGDAEQRYREDPVRMLRAI 206
Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231
RF + +D ++ L+ + R++ E K+ A M +F
Sbjct: 207 RFATKLNMQ-MDKHVQEPIVEMASLLRNIPPARLFDEFLKMFMAGKASANFEMMVQHNLF 265
Query: 232 KEIFLDVQ 239
+++F ++
Sbjct: 266 QQMFPVLK 273
>gi|294102166|ref|YP_003554024.1| CBS domain containing protein [Aminobacterium colombiense DSM
12261]
gi|293617146|gb|ADE57300.1| CBS domain containing protein [Aminobacterium colombiense DSM
12261]
Length = 877
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 86/418 (20%), Positives = 149/418 (35%), Gaps = 42/418 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
LI + K+ IVGG VRD ++ D+D+ ++ ++ I
Sbjct: 463 LIYLGKEAQSLGMKAYIVGGIVRDIMLGRESLDLDVVVEGNAVDFLKSINQEG-CHISLH 521
Query: 75 ISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-- 131
Y T +I D+ T R + V + K D RRDFTINA+
Sbjct: 522 ERYKTGSLIFSDGMKVDVATARREFYEYPLAQPRVSSDSLKHDLYRRDFTINAMAVSITP 581
Query: 132 --QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH-YGEKNIDSDGLV 188
G +IDY GG DL +T+K + + +ED R++R R ++ L+
Sbjct: 582 DSWGTLIDYFGGRRDLNKKTLKVLH--NLSFVEDPTRVIRGIRLEQRLNFHLEDNTLRLL 639
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--------- 239
S L LS R+ SE+ ++ K P A+ M G++ +F ++
Sbjct: 640 HSCLKGGLLARLSGYRLRSELELTMQEKAPFPALKRMAELGVWDILFPGLRIGKTAVRTI 699
Query: 240 ---EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
L ++S+ + +EW + L + + +IL R+I +
Sbjct: 700 RRLSAFLARISRDFPDFRGYEW-LAFLAALAIESHETVQFAILDRLSLAPRERDIMVQSL 758
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
Y Y ++ + A + ++LS +
Sbjct: 759 DGLRAAEQDLGGRTLVKNSEIYGYLREISPVTALFWSAA------TERWRVRRRILSYLT 812
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ--------------EWINSSFQLS 400
+ LTG D+++ G G ++G IL + WI ++F L
Sbjct: 813 RLYRTKSHLTGRDLIEMGYRGGPQIGEILSQLRDRCLNEELTTLEEEVAWIKNNFPLE 870
>gi|255068167|ref|ZP_05320022.1| poly(A) polymerase [Neisseria sicca ATCC 29256]
gi|255047594|gb|EET43058.1| poly(A) polymerase [Neisseria sicca ATCC 29256]
Length = 456
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 72/376 (19%), Positives = 147/376 (39%), Gaps = 32/376 (8%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ L+ ++ +VGGAVRD L+ + +D DIAT P+++ +IF ++R
Sbjct: 40 AAEKVVRRLHDEGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIHKIFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMVGPETIEVTTFRGGGKVQQNAHGRIMKDNTYGSMEEDAMRRDFTCNALYY 155
Query: 130 -DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ ++ID+ G+ D+ +R + IG+A R ED +RILR R G +++ +
Sbjct: 156 DPIKEEIIDFHHGVGDIADRKLVMIGNAAERYQEDPVRILRAVRLSGKLGF-DVEENTAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-----L 243
+ LK R++ EI KLL + + + + G+ ++ + +
Sbjct: 215 PIPEQAGRLKHEPVARLFDEIMKLLFSGYARECLKRLNSLGVSDDVHPLLTALKSAAKPE 274
Query: 244 DQLSQVIEAEQVFEWKID----------SLLRFIVLISWQDKK-------SILSMAKKFS 286
+++ + + D ++L ++ WQD LS A
Sbjct: 275 NRIISLALKNTDERLRADKSVSVGFVLAAVLWPVLNRHWQDNIKRGQKPAHALSEAMNTM 334
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346
+ + + ++ + M+A+ + A + L +
Sbjct: 335 RETVEKGWGVPQRFAATMREIWQLQPQFDYTRGARPHKMLAQARFRAAYDFLVLRGEVGE 394
Query: 347 FILQVLSDIIHWKKPL 362
++ ++
Sbjct: 395 VERDLVEWWTKFQHAD 410
>gi|219684228|ref|ZP_03539172.1| polynucleotide adenylyltransferase [Borrelia garinii PBr]
gi|219672217|gb|EED29270.1| polynucleotide adenylyltransferase [Borrelia garinii PBr]
Length = 410
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 94/394 (23%), Positives = 159/394 (40%), Gaps = 18/394 (4%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
+ +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II
Sbjct: 21 NYEFYLVGGALRDLLLNKQPCDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFN 76
Query: 86 KKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGL 142
KK F+ITT R + + +T++ D RRDFTINA+ D +ID G
Sbjct: 77 KKIFEITTYRIEKEYENNRTPKQVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDCYNGK 136
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL + I+ IG+++ R+ ED LRILR RF + K + + K + L I
Sbjct: 137 KDLNKKIIRCIGNSNKRLEEDALRILRAARFSSTLNFKIEKNTLISMKYKKENILMISKE 196
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
+KLLE KN I ++ FK +L+ +++I+ + +
Sbjct: 197 RIKNE-FHKLLEGKNIQKGIYYLKKVDFFKNF------FNLEIKTKLIKKTALLNKEKFY 249
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
L +L + K + + ++ + + N+ +I ++ + YL
Sbjct: 250 LKAITILTIEKPIKELKEKLTLLKFSNKEIKLILFYRSIIDNKNIFNIKKLSDIRYLLSK 309
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPPG 378
+I + FI++ + K P + G D+
Sbjct: 310 STREHYKEIIDIYKALKGKKKKYLFIVKNIKRKKLLKNPLSLKDLKINGKDIQNLEEIEN 369
Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
K +G IL I + +++ L ++ L
Sbjct: 370 KNIGKILNTLLSHVIENPKLNTKKYLIERIKTLK 403
>gi|213423730|ref|ZP_03356710.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
Length = 262
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 18/240 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 192
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 193 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTI 251
>gi|300726837|ref|ZP_07060267.1| polyA polymerase family protein [Prevotella bryantii B14]
gi|299775950|gb|EFI72530.1| polyA polymerase family protein [Prevotella bryantii B14]
Length = 488
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 75/470 (15%), Positives = 154/470 (32%), Gaps = 78/470 (16%)
Query: 10 FHDSDLINILS--LLNKGED-------KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
++DL IL + +K + +VGG VRD + DID+ V
Sbjct: 4 LSNADLAKILDKDIFHKISYAADSLQLECYVVGGYVRDLFLERPSNDIDVVVVGSGIAVA 63
Query: 61 RIFSKTRYK--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
+ K I ++GT ++ + + R + + +V D
Sbjct: 64 EKLRQELGKKAHISVFKNFGTAQVKYKGMEVEFVGARKESYSHDSRKPIVENGTLDDDQN 123
Query: 119 RRDFTINALYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
RRDFTINAL + D GL D+ + I D +D LR++R RF
Sbjct: 124 RRDFTINALAVCLNKERFGELVDPFDGLLDMEDGIIATPLDPDVTFSDDPLRMMRCIRFA 183
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
+ I+ A + LKI+S+ERI E+NK++ + +P + +++ G+ K I
Sbjct: 184 TQLNFQ-IEDVTYEALSRNADRLKIISAERIADELNKIMLSPHPSVGLYYLHETGLLKLI 242
Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKID-------------------------SLLRFIVL 269
++ + + ++ + F+ ++ LR+ L
Sbjct: 243 IPELDIMDVVEIRNGRGHKNNFDHTLEVLENVCKAQLAKNEVEPKIVSINTKLWLRWAAL 302
Query: 270 ISWQDKKSILSMA----KKFSLPRE-------------------IRYFLISFFNCNFNQK 306
K F ++ +
Sbjct: 303 FHDIGKPKSKRWDNVAGWTFHNHNFLGAKMIPSIFRRMKLPMGAEMKYVQKMVELHMRPI 362
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----- 361
++ E+ + + L ++T ++ L + ++
Sbjct: 363 VIADEEVTDSAVRRLLNDAGDDIDDLMMLCEADITSKNAIRKQHFLDNFRVVREKLAELK 422
Query: 362 --------LFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQE 402
+ G+++++ + P ++VG + K +++ +E
Sbjct: 423 EKDYKRLLQPVIDGNEIMEMFHLVPSREVGTLKQTLKDAVLDNKVANERE 472
>gi|163785978|ref|ZP_02180426.1| putative polyA polymerase [Flavobacteriales bacterium ALC-1]
gi|159877838|gb|EDP71894.1| putative polyA polymerase [Flavobacteriales bacterium ALC-1]
Length = 474
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 77/458 (16%), Positives = 158/458 (34%), Gaps = 61/458 (13%)
Query: 10 FHDSDLIN--ILSLLNKGEDKS----CIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRI 62
+ + I +++++ + ++GG VRD L++ +DIDI + +
Sbjct: 1 MNHKQALKHNIFNIISQSAGELQVDCYVIGGFVRDYLLDRGSAKDIDIVAIGSGIELAKQ 60
Query: 63 FSKT--RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ + +YGT + + R + ++ VV + D RR
Sbjct: 61 VAINLPNNPKVQIFKTYGTAMLRHDDIEIEFVGARKESYSEDSRNPVVENGTLQDDQNRR 120
Query: 121 DFTINALYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
DFTINAL + D G+NDL I+ + +D LR++R RF
Sbjct: 121 DFTINALALCLNKENFGELLDPFNGINDLDKGIIRTPLNPDITYSDDPLRMMRAIRFATQ 180
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
NI+S L A K ++I++ ERI E+NK+LE+K P + + G+ I
Sbjct: 181 LNF-NIESASLKAITDNKDRIQIITKERIVVELNKILESKTPSIGFILLEKTGLLDYILP 239
Query: 237 DV-----------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA--- 282
++ Q + + + + + + LR+ L+ K
Sbjct: 240 ELTALKGIDEIEGQRHKDNFYHTLEVVDNIAKTTDNLWLRWAALLHDIGKAPTKKFHKKI 299
Query: 283 -KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI--------------- 326
F I ++ + + + ++
Sbjct: 300 GWTFHAHEFIGSKMVYKLFKRLKMPLNDKMKFVQKMVFMSSRPIVLASDVTDSAVRRLVF 359
Query: 327 ---AKLKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDV 370
+ + L ++T ++ + ++ + P+TG+++
Sbjct: 360 DAGDYVDDLMTLCEADITTKNPKKFKKYHNNFKVVRDKIIEVEERDQVRNFQPPVTGEEI 419
Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+K + + P +++G I K+ + E L
Sbjct: 420 MKAFNLKPSREIGIIKEAIKEAILEGDIPNEHEAAFQL 457
>gi|121634621|ref|YP_974866.1| putative poly(A) polymerase [Neisseria meningitidis FAM18]
gi|120866327|emb|CAM10068.1| putative poly(A) polymerase [Neisseria meningitidis FAM18]
Length = 448
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 35 AAENVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 90
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 91 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 150
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R G ++ +
Sbjct: 151 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-DLSEETAA 209
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 210 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 262
>gi|254670458|emb|CBA06113.1| poly(A) polymerase [Neisseria meningitidis alpha153]
Length = 453
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R G ++ +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-DLSEETTA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 267
>gi|302342642|ref|YP_003807171.1| polynucleotide adenylyltransferase region [Desulfarculus baarsii
DSM 2075]
gi|301639255|gb|ADK84577.1| Polynucleotide adenylyltransferase region [Desulfarculus baarsii
DSM 2075]
Length = 893
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 72/411 (17%), Positives = 141/411 (34%), Gaps = 23/411 (5%)
Query: 13 SDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
++ IL + K D +VGG+VRD + DID+ R F++ R
Sbjct: 473 KPVVTILQQMGKVGDDLGEDVYLVGGSVRDLFLRSDHLDIDVVVEGDAIEFARAFAQGRD 532
Query: 69 K-VIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ T + T K++ D+ T R + VV K D RRDFTIN
Sbjct: 533 DLRLRTHKKFNTAKLLFDSGLTMDLATARLEYYMSPAALPVVEHSSVKLDLYRRDFTINT 592
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ G+ + + + + + +ED R+ R RF +G +
Sbjct: 593 MAVRLNGRQFGLLIDFFEAMRDIKEKVIRVLHNLSFVEDPTRVFRAIRFEQRFGFRIGKL 652
Query: 185 DGLVASIKA-KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
+ + L+ R++ E+ +LE ++ AI + + + +Q ++
Sbjct: 653 TEALIKNAIKIDAFRRLTGSRLFGELKHILEEESVTPAIERLNEFKLLRVFHPALQ-LTA 711
Query: 244 DQLSQVIEAEQVFEWK---------IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294
QL + +AE+ W LL F+ L D++ + + ++ ++R
Sbjct: 712 KQLELLDQAEETLAWYRLSFIDKPLRRWLLYFLALADGLDEQQMTELCQRLGFAPKLREE 771
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ + + + + L + + + V
Sbjct: 772 ITEMRAKALRCVNVLQRRAARPSQTFELLRPLGLEFQLLVMAKTSKDYAKKA----VSQY 827
Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+ + L G D+ G PG IL ++ Q Q+++
Sbjct: 828 LTTMVRVRPELGGQDLKAMGYLPGPLYKQILDTLLAARLDGQVQTRQDEID 878
>gi|317493240|ref|ZP_07951662.1| poly(A) polymerase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918633|gb|EFV39970.1| poly(A) polymerase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 507
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 77/389 (19%), Positives = 130/389 (33%), Gaps = 48/389 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 87 SENALKVLYRLNKSGYEAYLVGGGVRDLLLGKQPKDFDITTSATPEQVRKLFRNCRL--- 143
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK------------VVFTRDWKADSLR 119
+ ++ + ++ T R G + + D+ R
Sbjct: 144 -VGRRFRLAHVMFGPEIIEVATFRGHHEHAGDGKNISQQAQNGMLLRDNVYGNIEEDAQR 202
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DY GGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 203 RDFTINSLYYSISDFTVRDYTGGLRDLQEGRIRLIGDPETRYREDPVRMLRAVRFAAKLD 262
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-- 236
I + L + S R++ E KLL++ + +F+ +F
Sbjct: 263 M-TICPQTAEPIPRLAALLHEIPSARLFEESLKLLQSGYGFATYKLLCEYQLFQPLFPVI 321
Query: 237 ----------DVQEISLDQLSQVIEAEQV-FEWKIDSLLRFIVLISWQD----------- 274
++ I L Q L ++ +
Sbjct: 322 SRHFTPNGDSPLERIINQVLKNTDHRLQNSMRVNPAFLFAAMLWYPLIELAQKINDESGL 381
Query: 275 -KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGDKVMIAK 328
++A L + R I + S+ K + ++
Sbjct: 382 TYYDAFALAMNDVLDEQCRTLAIPKRITALVRDIWSLQLRLSRRQGKRAHKLMEQPKFRA 441
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIH 357
LAL + + Q +
Sbjct: 442 AFDLLALRAQAENSNELQRLTQWWDEFQK 470
>gi|119356930|ref|YP_911574.1| metal dependent phosphohydrolase [Chlorobium phaeobacteroides DSM
266]
gi|119354279|gb|ABL65150.1| metal dependent phosphohydrolase [Chlorobium phaeobacteroides DSM
266]
Length = 470
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 84/452 (18%), Positives = 155/452 (34%), Gaps = 58/452 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVIPT 73
LI I L ++ + +VGG VRD LM+ S DIDI P + + +
Sbjct: 13 LIEIGDLADRKGVPAYVVGGYVRDMLMHRSCSDIDIMVIGDPLPFAQTIKNELPGRNLVV 72
Query: 74 SISYGTIKIICRK-----KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ T ++ +I R + + T + D RRDFTINAL
Sbjct: 73 FERFRTAQLEVSDSEKQTFKLEIVGARKESYNPDSRKPITETGTLEEDLARRDFTINALA 132
Query: 129 ADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
++D G+ L R ++ + +D LR++R RF A +D
Sbjct: 133 LSLNSSSRGLLVDQFNGIEHLSGRILRTPLEPKQTFSDDPLRMMRAARFSAQLDF-RLDE 191
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-EISL 243
++A + + ++I+S ERI E K+++ P + +Y G+ KE +V +
Sbjct: 192 AIILAMNEMHERIRIVSRERISQEFLKIMQCPKPSAGLSILYETGLLKEFMPEVALMAGI 251
Query: 244 DQLSQVIEAEQVFEW----------KIDSLLRFIVLISWQDKKSILSM------------ 281
+Q+ + + ++ LR L+ K
Sbjct: 252 EQVDGLGHKDTLYHTFQVIDNVAAQSDKLWLRVAALLHDIAKPVTKRFYPSSGWTFHGHE 311
Query: 282 ----------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
P E ++ + LS EI L
Sbjct: 312 AVGIRLVSKIFTAMRWPLEPSEYVRKMVRMHHRPIPLSKEEITDSAVRRLIVDAAEDLDD 371
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIH-------------WKKPLFPLTGDDVVK-YGIPP 377
+ L ++T ++ + +++S+ + K P+ G D++ G+
Sbjct: 372 LMLLCRADVTSKNPRKVARIMSNFNNVEQRISEVAEKDLLAKWRPPIDGKDIMDTLGLSE 431
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
GK VG + + I+ +E ++
Sbjct: 432 GKLVGIMKSRMENAVIDGIIPYEREAALDYIK 463
>gi|304387847|ref|ZP_07370021.1| poly(A) polymerase [Neisseria meningitidis ATCC 13091]
gi|304338112|gb|EFM04248.1| poly(A) polymerase [Neisseria meningitidis ATCC 13091]
Length = 502
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 64 AAENVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 119
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 120 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 179
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R + G + +
Sbjct: 180 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLGF-ELSEETAA 238
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 239 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 291
>gi|329571706|gb|EGG53387.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Enterococcus faecalis TX1467]
Length = 196
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 58/169 (34%), Positives = 96/169 (56%), Gaps = 6/169 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF + +
Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFK----RTVD 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130
I +GT+ ++ + +++TT R++ R +V F R K D RRDFTINAL D
Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
G++ID G+ DL N+TI+ +G+ H R ED LR++R RF +
Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDF 175
>gi|86743206|ref|YP_483606.1| metal dependent phosphohydrolase [Frankia sp. CcI3]
gi|86570068|gb|ABD13877.1| metal dependent phosphohydrolase [Frankia sp. CcI3]
Length = 502
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 85/461 (18%), Positives = 153/461 (33%), Gaps = 64/461 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--------VQDIDIATTILPDRVMRIFS 64
+ + +VGG+VRD+L+ D+D AT P+RV+ I
Sbjct: 23 PAADELGRVFTANGYLLHLVGGSVRDALLGRPASAVSGAVPADLDFATDARPERVLEITR 82
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFT 123
I++GT+ + F+ITT RS+ R V + +AD RRDFT
Sbjct: 83 GWAEATWEAGIAFGTVGLARHGVRFEITTYRSEAYDRKSRNPAVTYGDSLEADLSRRDFT 142
Query: 124 INALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+ G +D GG+ DL ++ +D LRILR RF A G +
Sbjct: 143 VNAMAVSVPGHDFVDLFGGMADLARGVLRTPASPEASFDDDPLRILRAARFEAALGLTPV 202
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+A + +S ERI E+ KL+ A +P+ + + GI + +V +
Sbjct: 203 PELVAAMRSRADRLAV-VSPERIRDELRKLMSAPDPVAGLERLVEVGIADIVLPEVSAMR 261
Query: 243 LDQLSQVIEAEQVFEW--------------KIDSLLRFIVLISWQDKKSILSM------- 281
++ + + D +LR+ L+ K
Sbjct: 262 MEIDEHHQHKDVYAHTMTVLRQAMTLEEPGEPDEVLRWAALLHDIGKPRTRRHMTGGRVS 321
Query: 282 ---------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDK 323
P+++ + + E Y++
Sbjct: 322 FHHHEVVGRDMARRRLAALHFPKDVTDAVCRLVYLHLRFHGYGAGEWTDAAVRRYVHDAG 381
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVV-K 372
+++L + + + + + L+GDD++
Sbjct: 382 PQLSRLHKLVRSDCTTRNRRKAAALSRTYDSLEERIAELAAREEIAAIRPELSGDDIMVL 441
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLS---QEDLHHLLRK 410
G+PP + VG H + + +L R+
Sbjct: 442 LGLPPSRLVGQARSHMLEFRFEHGIVGREAAEAELFRWARE 482
>gi|258593577|emb|CBE69918.1| putative tRNA cytidylyltransferase [NC10 bacterium 'Dutch
sediment']
Length = 430
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 68/398 (17%), Positives = 135/398 (33%), Gaps = 23/398 (5%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR-KK 87
VGG VRD L+ DID+ + + + V+ + +GT +
Sbjct: 32 IYAVGGYVRDLLLGRENADIDLVVEGDAIAIAGRLAHSLKAVVASHPRFGTAHLRLPGGG 91
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV----IDYVGGLN 143
D+ T R + V AD RRDF+INA+ A ID +GGL
Sbjct: 92 KLDLATARRERYPHAAALPEVQPAPLLADLFRRDFSINAMAARIDRHRFGPLIDPLGGLR 151
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK-ILSS 202
+L + I+ + ++D R+ R RF Y + K+G L+
Sbjct: 152 NLEHGRIRALH--EQSFIDDPTRLFRTARFEGRYRFLIARCTLRLMKAAVKEGAVGHLAG 209
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
RI+ E+ + + + + I + + G+ I + +D
Sbjct: 210 SRIFRELYLIAQEPSAPHIIWRLRDLGVLTAIHPGLALPG-----TAFGLLDRVRQVLDQ 264
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
L + +++ F P+ L + + L+I
Sbjct: 265 ALPIPLAGKVDVSQTVFLGMLYFLHPKTFIAVLKRLAPPHRVAEKLAIDYKACRNTARAL 324
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK----------PLFPLTGDDVVK 372
+ + +A ++L+ + +L +L+ + + L G D+ +
Sbjct: 325 TRAVDLRQSRIARLLDSLSPEAKVVLLAILAKGPAREAVFHYLTTSWQIVPLLKGHDLRQ 384
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G+ PG L + ++ +++ +L++
Sbjct: 385 LGLKPGPIYRQALAALRSAKLDGRLHTREDETSFVLQR 422
>gi|69250632|ref|ZP_00605176.1| Polynucleotide adenylyltransferase [Enterococcus faecium DO]
gi|68193917|gb|EAN08494.1| Polynucleotide adenylyltransferase [Enterococcus faecium DO]
Length = 249
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 6/238 (2%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F K I
Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFP----KTIDIG 68
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ ++ + ++ITT R++ R V F R D RRDFTINA +
Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLSEDLKRRDFTINAFALKED 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G++ID GL DL + ++ +G+ H R ED LR++R RF + G K +
Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFKLEEETFYAIKEN 188
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ KI I LL + + L + +L +L
Sbjct: 189 HELLGKISVERINVEFIKMLLGNERAAGIHAFIETECYICCPGLKEEGEALLRLLNYH 246
>gi|256424923|ref|YP_003125576.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Chitinophaga pinensis DSM 2588]
gi|256039831|gb|ACU63375.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Chitinophaga pinensis DSM 2588]
Length = 483
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 73/451 (16%), Positives = 154/451 (34%), Gaps = 54/451 (11%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
L I ++ ++GG VRD ++N +D+D+ + +
Sbjct: 21 ERKVLEQIALAAHELGVACYLIGGFVRDKILNRRTKDMDVVCVGDGIALAHKVAGYFDNA 80
Query: 71 -IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ +YGT ++ + R + V + D LRRDFTINAL
Sbjct: 81 KVSFFKTYGTAQVKWNDLEIEFVGARKESYRHESRNPDVEPGTLRDDQLRRDFTINALAI 140
Query: 130 DQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
D GG+ DL + I+ + ++D LR++R RF + + I +
Sbjct: 141 SLNEADYGSLVDPFGGIADLEAKIIRTPLEPAQTFIDDPLRMMRAIRFASQL-QFTISEE 199
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---- 241
+ + +KI+S ERI E NK++ + P + +Y GI K I + ++
Sbjct: 200 SFKGIKENAERIKIISQERITDEFNKIMLSPVPSVGLDLLYKAGIMKIILPQMVDLVGVE 259
Query: 242 -------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP------ 288
+ + + + D LR+ L+ K + +
Sbjct: 260 TVDGKGHKDNFYHTLQVVDNIARNTKDLWLRWAALLHDIGKPATKRFEQGHGWTFHGHDA 319
Query: 289 -----------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
E + + +++ I ++
Sbjct: 320 VGGKMVTRIFTKMKLPLHEDMRLVKKLVELHLRPISVTKENITDSAIRRLLFDAGDDIEG 379
Query: 332 FLALHYNNLTHQDTCFILQVLSDII-------------HWKKPLFPLTGDDVVK-YGIPP 377
+ L ++T ++ + + L + + P+TG+ +++ +G+ P
Sbjct: 380 LMMLCEADITSKNKAKVKRYLENFELVRQRLKEVEESDRIRNWQPPVTGEMIMETFGLSP 439
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ VG++ ++ ++ S + + L
Sbjct: 440 SRVVGDLKNAIREAILDGVIPNSYDAAYAFL 470
>gi|183222200|ref|YP_001840196.1| putative tRNA nucleotidyltransferase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189912254|ref|YP_001963809.1| poly A polymerase family of protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776930|gb|ABZ95231.1| Poly A polymerase family of protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167780622|gb|ABZ98920.1| Putative tRNA nucleotidyltransferase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 430
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 91/415 (21%), Positives = 159/415 (38%), Gaps = 23/415 (5%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
+ +++ H L I L + +VGG+VRD +M ++ D+ T P V
Sbjct: 7 LTTLI--PTLHKKHLDTINFALKNAGFECYLVGGSVRDLVMKKIPKEYDLTTNAEPKDVK 64
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSL 118
++F VI T I +GT+ ++ K +++TT R D + R V F D
Sbjct: 65 KLFR----TVIDTGIEHGTVTVVLDKVNYEVTTYRIDKDYVDGRRPGHVEFGTTLHEDLK 120
Query: 119 RRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NAL D V ID GL D++++TI+ IG+ R ED LR +R RF +
Sbjct: 121 RRDFTMNALAYDLTSGVLIDDHNGLADIKSKTIRTIGNPIQRFTEDGLRPIRALRFASTL 180
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
ID + A + K K +S ER EI K + P I + +F+
Sbjct: 181 NF-KIDEETKKAIHQTKHITKKISLERFQDEILKSFLGEKPSVMIALLVEENLFQVFLPS 239
Query: 238 VQ------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291
+Q EI L++L++V + + + + + + S+ ++
Sbjct: 240 MQLDLIPNEIFLEELNKVSKDLVGLQLSFAFYSILPNVSLKELETYLRSLKFSGQNIKDT 299
Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLY----GDKVMIAKLKIFLALHYNNLTHQDTCF 347
F N S+ Y +L + +
Sbjct: 300 LLFSELIQKWNQYPDLNSLTTYDIKKYFLAPVKRHFQSRYELNEIFFQKLTPIFGNEIMK 359
Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV--GNILVHCKQEWINSSFQLS 400
+L + ++ + G+ + + P K+ G +L + + S +
Sbjct: 360 LLSIWNENPPLLLSDLSINGNHLSE-NFPDLPKLKFGEVLSFLLELVLQSPKENE 413
>gi|315646461|ref|ZP_07899579.1| Polynucleotide adenylyltransferase region [Paenibacillus vortex
V453]
gi|315278104|gb|EFU41424.1| Polynucleotide adenylyltransferase region [Paenibacillus vortex
V453]
Length = 434
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 87/412 (21%), Positives = 169/412 (41%), Gaps = 24/412 (5%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
++ L + ++ VGG VRD M V D+DI T+ LP+ +F KV+PT I +
Sbjct: 24 VIRTLLQHGYEAYWVGGCVRDEYMGRRVSDMDITTSALPEVTCSVFP----KVVPTGIKH 79
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYADQQGKV 135
GT+ ++ + F++TT R + + F RD K D RRDFT+NA+ G
Sbjct: 80 GTVTVLMEGQAFEVTTYRVESGYEDHRHPTEVAFVRDVKEDLTRRDFTMNAMARGIDGSW 139
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
+D GG D+ + I+ +GDA R ED LR++R RF + +G +I + +
Sbjct: 140 VDPFGGREDIDKQVIRCVGDARLRFREDALRMVRCIRFASVFGF-SIALHTWKGILSERD 198
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-QLSQVIEAEQ 254
L ++ ERI SE K++ PL + G++ + D + + I
Sbjct: 199 TLSWIAMERIRSEFEKIMTGPTPLRGLEMFLRSGLYSRMKAPFPYTGHDVPIMEAIHRTA 258
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE-- 312
I L + + + + ++ + R ++ + + ++ +
Sbjct: 259 PEHSSIRWSLLLLAC--GISAQEAERLLRSWTFSNKQREAIVKLLALHESYAQVNEEKEK 316
Query: 313 --------IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV---LSDIIHWKKP 361
KL +G + + L++ A+ + + Q+ L ++
Sbjct: 317 EKQSGRLTWIKLVLAHGAEAAHSWLQMQTAMEWTGAATVSPAVMEQLEGWLQELQIRNLK 376
Query: 362 LFPLTGDD-VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+TG + ++ G +G +L ++ +E L + ++++
Sbjct: 377 DLNITGSELLLALDKRGGAWLGELLGELLEKAAAGLINNDKESLINEAKRVV 428
>gi|167752331|ref|ZP_02424458.1| hypothetical protein ALIPUT_00575 [Alistipes putredinis DSM 17216]
gi|167660572|gb|EDS04702.1| hypothetical protein ALIPUT_00575 [Alistipes putredinis DSM 17216]
Length = 472
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 75/455 (16%), Positives = 155/455 (34%), Gaps = 53/455 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I ++ ++ + +VGG VRD + DID+ + + +
Sbjct: 13 PVFRQISAIASRQGVPAFVVGGYVRDFYLGRPSTDIDVVVVGSGIGLAEELGRELRTKVS 72
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA--- 129
++GT + + + R + V + D RRDFTINA+
Sbjct: 73 VYKTFGTAALRTKGVEVEFVGARKESYVRDSRKPQVEAGTLEDDQRRRDFTINAMAWSLG 132
Query: 130 -DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ G+++D G+ DL I+ D +D LR++R RF + + +
Sbjct: 133 EEDFGRLVDPFDGMRDLHEGIIRTPCDPDVTFSDDPLRMMRAVRFASQLNF-RLFPETFE 191
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------- 241
A ++ ++ + I+S ERI E+NK++ + P + G+ + IF ++Q +
Sbjct: 192 AIVRNRERIGIVSRERIAVELNKIVLSPVPSVGFDLLERTGLLELIFPEMQRLKGVERRG 251
Query: 242 ----SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL---------- 287
+ + + V D LR+ ++ K + +
Sbjct: 252 QHAHKDNFYHTLKVLDNVAAVSDDLWLRWAAILHDIGKPLTKAYDPQVGWTFHSHEVVGS 311
Query: 288 -------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
E F+ + LS + ++ +
Sbjct: 312 KMVPAIFRALKLPMNEHMKFVRKMVFLHLRPIILSEDMVTDSAVRRLLFEAGDDVEKLMT 371
Query: 335 LHYNNLTHQDTCFILQVLSDII-------------HWKKPLFPLTGDDVVK-YGIPPGKK 380
L ++T + + L + + P+TG+ +++ YG+PP +
Sbjct: 372 LCEADITSGIDAKVKRYLRNFELVRRKMKDLEERDRIRNFQPPITGEIIMETYGVPPSRI 431
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+G I K+ + E + L+ +L
Sbjct: 432 IGEIKEIIKEAILEGEIPNDYEAAYALMERLADER 466
>gi|152968433|ref|YP_001364217.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Kineococcus radiotolerans SRS30216]
gi|151362950|gb|ABS05953.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Kineococcus radiotolerans SRS30216]
Length = 508
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 87/456 (19%), Positives = 145/456 (31%), Gaps = 56/456 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L+++ + + +VGG VRD+ + D+D T PD +R+
Sbjct: 44 PLLVDLGRVFAGAGFELSLVGGPVRDAFLGRRSADLDFTTDARPDDTVRLLKAWGDAHWE 103
Query: 73 TSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130
+GTI + ++TT R D R +V + D D RRDFT+NA+
Sbjct: 104 VGRDFGTIGARKKDVVVEVTTYRSESYDPDSRKPEVAYGDDLVGDLSRRDFTVNAMALRL 163
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
D GL DL ++ G A +D LR++R RF A + D + A
Sbjct: 164 PSLDFADPHDGLTDLAAGVLRTPGTAERSFSDDPLRMMRAARFAAQL-RMRVAPDVVAAM 222
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------ 238
+ I+S+ER+ E+ K L A +P+ + + + G+ + + ++
Sbjct: 223 TAMAARIAIVSAERVRVELEKTLLAADPVAGLRLLVDTGLAEHVLPELPALQLEIDEHHR 282
Query: 239 ----QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------- 281
E SL L Q I+ E D LLR L+ K
Sbjct: 283 HKDVYEHSLTVLQQAIDLEGGDVPGPDLLLRLSALLHDIGKPRTRRFEEGGGVSFHHHEV 342
Query: 282 ---------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKL 329
K + + + E Y+ ++ +L
Sbjct: 343 VGAKLVAKRLKALRFDNDTIKAVARLTELHLRFHGYGDGEWTDSAVRRYVTDAGPLLPRL 402
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK-YGIPPG 378
+ + D+ L G ++ GI P
Sbjct: 403 HKLTRSDCTTRNARKAKRLADAYDDLEARIARLREQEELDSIRPDLDGTQIMALLGIGPS 462
Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ VG ++ L E LR A
Sbjct: 463 RVVGRAYQFLLGLRMDRG-PLGAEVAERELRAWWAQ 497
>gi|298368846|ref|ZP_06980164.1| poly(A) polymerase [Neisseria sp. oral taxon 014 str. F0314]
gi|298282849|gb|EFI24336.1| poly(A) polymerase [Neisseria sp. oral taxon 014 str. F0314]
Length = 453
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 10/234 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ L+ ++ +VGGAVRD L+ + +D D+AT P+ V +IF ++R
Sbjct: 39 AAEKVVRRLHNEGFEAYVVGGAVRDLLLGIEPKDFDVATNATPEEVRKIFRRSRI----I 94
Query: 74 SISYGTIKIICRKKYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 95 GRRFQIVHVMVGPETIEVTTFRGGGKVVQNQHGRIMKDNNYGSMEEDAMRRDFTCNALYY 154
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D ++I D+ G D++ + + IG+ R ED +RILR R G ++
Sbjct: 155 DPIRRLIVDFHHGAADVQAKKLVMIGNPAERYQEDPVRILRAVRLSGKLGF-EVEEHTAA 213
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ LK R++ EI KLL + + + + + GI +I + +
Sbjct: 214 PIPEYAGRLKQEPVSRLFDEILKLLFSGHARDCLQQLNKLGIGSDIHPLLTAMK 267
>gi|307153895|ref|YP_003889279.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7822]
gi|306984123|gb|ADN16004.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7822]
Length = 908
Score = 143 bits (359), Expect = 6e-32, Method: Composition-based stats.
Identities = 88/443 (19%), Positives = 153/443 (34%), Gaps = 59/443 (13%)
Query: 12 DSDLINILSLL----NKGEDKSCIVGGAVRDSLM--NLSV---QDIDIATTI-------- 54
+ +L ++ +VGGAVRD L+ QDID+
Sbjct: 467 HPPIWKLLQTAAQQAHQRGWHLYLVGGAVRDLLLAPGEETLTLQDIDLVVDGFHRAADVG 526
Query: 55 ----LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGRY 104
L +++ I+ + R + T +I K DI T R++
Sbjct: 527 AGVELANQLQEIYPQVRLS---VHGEFQTAALIWHKDAQLGSLMIDIATARTEFYPYPAA 583
Query: 105 AKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
V + D RRDFTINAL ++G+++D+ GG+ DLR++ I+ + +
Sbjct: 584 NPQVEASSIRQDLYRRDFTINALAVRLTSPREGELLDFFGGVEDLRSQQIRVLHA--NSF 641
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS----------EIN 210
+ED RI R RF G K G+ E+
Sbjct: 642 IEDPTRIYRAVRFAVRLGFKIDPHTEDYIRYAICSGVYDRLRLENHPAPALTTRLRAELT 701
Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDV-----QEISLDQLSQVIEAEQVFEWKIDSLLR 265
+LEA A+ + N G + + ++ + +S+ ++ L+R
Sbjct: 702 YILEAAYWKPALQLLSNLGALRCLHSNLVLDANLWWQIRFVSRWLKCLDSENHFSHWLIR 761
Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEIKKLFYLYGDKV 324
VLI+ +A LP++ L N Q+ L + +L +
Sbjct: 762 LEVLIAALKPDEREQIAANLQLPKDSIERLRDLEKIENSVQQNLKKCDKISEIFLLLRQY 821
Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNI 384
+ L I A D ++ + W K L G+D+ G PG + I
Sbjct: 822 KVPSLIIVAARS-------DRLERHRIWQYLTKWSKIQTFLDGNDLKAMGYKPGPQFKQI 874
Query: 385 LVHCKQEWINSSFQLSQEDLHHL 407
L ++ +E + +
Sbjct: 875 LDQLLIATLDGEIMNREESVEFV 897
>gi|254672376|emb|CBA05629.1| poly(A) polymerase [Neisseria meningitidis alpha275]
Length = 362
Score = 143 bits (359), Expect = 6e-32, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R + G ++ +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLGF-DLSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 267
>gi|113969072|ref|YP_732865.1| poly(A) polymerase [Shewanella sp. MR-4]
gi|113883756|gb|ABI37808.1| poly(A) polymerase [Shewanella sp. MR-4]
Length = 435
Score = 143 bits (359), Expect = 6e-32, Method: Composition-based stats.
Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 16/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ L +D D+ T P+ + ++F R
Sbjct: 14 SENALKVLYRLNKSGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRNCRV--- 70
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R +GR + + D+ RRD
Sbjct: 71 -VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKISKANAEGRLLRDNVYGEIDEDAERRD 129
Query: 122 FTINALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D I GG DL+ T++ IGD R ED +R+LR RF
Sbjct: 130 FTVNALYYDISDYSIRSYGGGMDDLKAGTLRLIGDPETRYREDPVRMLRAVRFATKLSM- 188
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
ID + LK + + R++ E+ KL A + M +F+ +F V
Sbjct: 189 TIDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAMANFEMMQEYKLFEPLFPQVDA 248
Query: 241 I 241
+
Sbjct: 249 L 249
>gi|224534511|ref|ZP_03675087.1| polynucleotide adenylyltransferase [Borrelia spielmanii A14S]
gi|224514188|gb|EEF84506.1| polynucleotide adenylyltransferase [Borrelia spielmanii A14S]
Length = 410
Score = 143 bits (359), Expect = 6e-32, Method: Composition-based stats.
Identities = 91/392 (23%), Positives = 154/392 (39%), Gaps = 18/392 (4%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ +VGGA+RD L+N D D AT P+ ++++F I T I +GTI II
Sbjct: 20 NNYEFYLVGGALRDLLLNKQPCDFDFATNATPEEIIKLFPNN----IKTGIKHGTIGIIF 75
Query: 85 RKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141
KK F+ITT R + + + A +T++ D RRDFTINA+ D +ID G
Sbjct: 76 NKKIFEITTYRIEKEYEKKRAPKQVEYTKNLIKDLKRRDFTINAIAMDIFNFNIIDCYDG 135
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
DL + I+ IG+ + R ED LRILR RF + + + K + L I
Sbjct: 136 KKDLNKKIIRCIGNPNKRFEEDALRILRAARFSSTLNFNIEKNTLISMKYKKENILMISK 195
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+KLLE N I ++ FK +L+ +++I+ +
Sbjct: 196 ERIKNE-FHKLLEGINIQKGIYYLKKVDFFKNF------FNLEIKTKLIKKTALLNKDKF 248
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L +L + K + + ++ + + + ++ ++ + YL
Sbjct: 249 YLKAITILTIKKPIKELKESLTLLKFSNKEIRLILFYRSIIDDNNIFNVKKLSDIRYLLS 308
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPP 377
+I + FI++ + K P + G DV
Sbjct: 309 KSTREHYKEIIDIYKALKGKKKKYLFIIKNIKRKKLLKSPLSLKDLKINGKDVQNLVQIE 368
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
K +G IL I + ++ L ++
Sbjct: 369 NKNIGKILNLLLNYVIENPKLNTKNCLIKKIK 400
>gi|306824009|ref|ZP_07457383.1| tRNA adenylyltransferase [Bifidobacterium dentium ATCC 27679]
gi|304553007|gb|EFM40920.1| tRNA adenylyltransferase [Bifidobacterium dentium ATCC 27679]
Length = 456
Score = 143 bits (359), Expect = 6e-32, Method: Composition-based stats.
Identities = 84/440 (19%), Positives = 153/440 (34%), Gaps = 66/440 (15%)
Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVIPTSISYGT 79
+ + + +VGG VRD L++ D+D T+ P++ I + +GT
Sbjct: 1 MFAEEGYELALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFWDMGRKFGT 60
Query: 80 IKIICRKK-----YFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132
+ + R++ ++TT RSD R +V + + D RRDFT+NA+
Sbjct: 61 LGAMRRREDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPD 120
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ +D GG NDL ++ + +D LR++R RF A G I+ + A
Sbjct: 121 LEFVDPFGGANDLVKGVLRTPVNPRQSFDDDPLRMMRAVRFVAQLGF-RIEPETAEALSD 179
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + I+S+ER+ E+ KLL + P I + + G+ +F ++ + L+ + +
Sbjct: 180 MVERIDIVSAERVRDELTKLLLSDRPRAGIEALVDSGLADIVFPEIPALQLE-IDEHHRH 238
Query: 253 EQVFEWK--------------------IDSLLRFIVLISWQDKK---------------- 276
+ VFE D LR L+ K
Sbjct: 239 KDVFEHTMIVVDRAVALETGPDGPVPAPDLTLRLAALMHDIGKPKTRRFEPGGKVSFHHH 298
Query: 277 ------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330
K + + N + K +
Sbjct: 299 DAVGAKMTRKRLKALRFDHHMIEDVSELVNLHLRFHGYVEEPWTDSAVRRYVKDAGPLYE 358
Query: 331 IFLALHYNNLTHQDTCF-------------ILQVLSDIIHWKKPLFPLTGDDVVK-YGIP 376
L + T Q+ ++ L + L GD++++ GI
Sbjct: 359 RLNRLTRADATTQNRRKAMIFSSAMDEMEQRVRDLKKKEDFDAIRPDLNGDEIMQLLGIE 418
Query: 377 PGKKVGNILVHCKQEWINSS 396
PG VG H + +++
Sbjct: 419 PGPMVGRAYKHMLEYRLDNG 438
>gi|312879908|ref|ZP_07739708.1| CBS domain containing protein [Aminomonas paucivorans DSM 12260]
gi|310783199|gb|EFQ23597.1| CBS domain containing protein [Aminomonas paucivorans DSM 12260]
Length = 871
Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats.
Identities = 72/414 (17%), Positives = 149/414 (35%), Gaps = 26/414 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L + + + +GG VRD L+ QD+D+ + F + + +
Sbjct: 463 LRALGRVAQGQGARLFGIGGFVRDLLLGRPNQDVDLVVEGDAVAFLESFKGSDVR-VSVH 521
Query: 75 ISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
Y T ++ + D+ T R + V + K D RRDF++NA+
Sbjct: 522 RRYRTGTLVFPEGQKIDVATARREFYEYPVAPPTVSSDSLKHDLYRRDFSVNAMALSLNP 581
Query: 134 ----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH-YGEKNIDSDGLV 188
+++DY GG DL R ++ + + +ED R+LR R D++ L
Sbjct: 582 ATWGELVDYFGGRVDLERRLLRVLH--NLSFVEDPTRVLRGVRLERRLRFHMGDDTEKLA 639
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ--L 246
+ L +LS R+ SE+ +L + V + + G+ + +F ++ Q L
Sbjct: 640 RNCVRGGLLSLLSGPRLRSELELILLEPEAASMAVRLRDLGVLEGVFPGLRPGDRTQRTL 699
Query: 247 SQVIEAEQVFEWKID------SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
++ + + L L+ + + SL R ++
Sbjct: 700 RRLAAFRKRMGRDLPDSGSDRWLAALGALLGEGSGWVQRNALDRLSLSARERCWVERGLE 759
Query: 301 CNFNQKTLSIPEIKKLF---YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
++ Y + + ++ A + ++L +
Sbjct: 760 GLGAAESFLGTRADPPLSSIYGFLRDAPVPAALLWAAA------TEQWRVRRRILLYLTR 813
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+ LTG D+++ G P G VG +L + ++ + +++ +R+L
Sbjct: 814 LFRVEPMLTGRDLLEMGCPKGPWVGRLLGDLRGARLDGEVETLEDERAWAIRRL 867
>gi|332877661|ref|ZP_08445404.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332684410|gb|EGJ57264.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 473
Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats.
Identities = 75/435 (17%), Positives = 152/435 (34%), Gaps = 56/435 (12%)
Query: 28 KSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKT--RYKVIPTSISYGTIKIIC 84
+S ++GG VRD L+ +DIDI + + ++ + ++GT I
Sbjct: 25 ESYVIGGFVRDFLLQKKLPKDIDIVSIGSGISLAEKVAEQLPNSPKVSVFKNFGTAMIKA 84
Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----KVIDYVG 140
+ R + V + + D RRDFTINA+ ++ID
Sbjct: 85 DGLDIEFVGARRESYESNSRKPYVESGTLQDDQNRRDFTINAMAFSLNKDTFGELIDPFD 144
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200
GL DL + I+ D +D LR++R RF + I+ L A K K+ L+I+
Sbjct: 145 GLGDLERKLIRTPLDPDITYSDDPLRMMRAIRFATQLNFQ-IEDTSLNAISKNKERLQII 203
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----------QEISLDQLSQV 249
S+ERI E++K+L A P + +Y + I ++ Q + +
Sbjct: 204 SNERIVDELHKILLAAKPSIGLKLLYETELLHYILPELIALQGVQEQDGQRHKDNFWHTL 263
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSLPREIRYFLISFFNCNFNQ 305
+ + E + LR+ L+ K F + ++
Sbjct: 264 EVVDNIAEHTDNLWLRWAALLHDIGKAPTKRFDKKIGWTFHGHEFVGSKMVYHLFKRLRM 323
Query: 306 KTLSIPEIKKLFYLYGDKVMI-------------------AKLKIFLALHYNNLTHQDTC 346
+ + + ++ + + + L ++T ++
Sbjct: 324 PLNDKMKYVQKIVKMSSRPIVIAEDIVTDSAVRRLVFDAGEEFEDLMTLCEADITTKNPK 383
Query: 347 FILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEW 392
+ + H + P++G+++++ +G+PP + VG + K+
Sbjct: 384 KFKKYHDNFQIVRQKVVEVEEKDHIRNFQPPISGEEIMQTFGLPPSQPVGVLKEAIKEAI 443
Query: 393 INSSFQLSQEDLHHL 407
+ +
Sbjct: 444 LEGKIPNEYQAAKAF 458
>gi|315224075|ref|ZP_07865915.1| polyA polymerase family protein [Capnocytophaga ochracea F0287]
gi|314945808|gb|EFS97817.1| polyA polymerase family protein [Capnocytophaga ochracea F0287]
Length = 469
Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats.
Identities = 78/462 (16%), Positives = 158/462 (34%), Gaps = 60/462 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKT-- 66
+ I + + +S ++GG VRD L+ +DID+ + + ++
Sbjct: 7 LSNPIFKLISDISAEISVESYVIGGFVRDYLLEKKLPKDIDVVSIGSGISLAEKVAERLP 66
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ ++GT I + R + V + + D RRDFTINA
Sbjct: 67 NAPKVSIFKNFGTAMIKADGLDIEFVGARRESYEANSRKPYVESGTLQDDQNRRDFTINA 126
Query: 127 LYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ ++ID GL DL+ + I+ D +D LR++R RF I
Sbjct: 127 MAFSLNRDTFGELIDPFDGLGDLKRKLIRTPLDPDITYSDDPLRMMRAIRFATQLNF-KI 185
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ L A K+ LKI+S+ERI E+NK+L + P + +Y G+ I ++
Sbjct: 186 EKQSLKAITDNKERLKIISNERIVEELNKILASPKPSIGLKLLYETGLLHYILPELIALQ 245
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSL 287
Q + + + + E + LR+ L+ K F
Sbjct: 246 GVEEHDGQRHKDNFWHTLEVVDNISENTDNLWLRWAALLHDIGKAPTKRFDKKIGWTFHG 305
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI-------------------AK 328
+ ++ + + + +I +
Sbjct: 306 HEFVGSKMVYHLFKRLRMPLNDKMKYVQKIVKMSSRPIIIADDIVTDSAVRRLVFDAGEE 365
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YG 374
+ + L ++T ++ + + H + P++G+++++ +
Sbjct: 366 FEDLMTLCEADITTKNPKKFKKYHDNFQIVRQKVVEVEEKDHIRNFQPPVSGEEIMQTFN 425
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL----LRKLI 412
+PP + VG + K+ + E +K+
Sbjct: 426 LPPSQPVGMLKEAIKEAILEGKIPNEYEAAKAFMMEKAKKMK 467
>gi|16763574|ref|NP_459189.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16418686|gb|AAL19148.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|261245416|emb|CBG23206.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267991868|gb|ACY86753.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301156811|emb|CBW16287.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|323128504|gb|ADX15934.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|332987136|gb|AEF06119.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 472
Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 228 MH-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 286
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 287 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 333
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 334 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 393
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 394 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 420
>gi|171741747|ref|ZP_02917554.1| hypothetical protein BIFDEN_00838 [Bifidobacterium dentium ATCC
27678]
gi|171277361|gb|EDT45022.1| hypothetical protein BIFDEN_00838 [Bifidobacterium dentium ATCC
27678]
Length = 456
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 84/440 (19%), Positives = 153/440 (34%), Gaps = 66/440 (15%)
Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVIPTSISYGT 79
+ + + +VGG VRD L++ D+D T+ P++ I + +GT
Sbjct: 1 MFAEEGYELALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFWDMGRKFGT 60
Query: 80 IKIICRKK-----YFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132
+ + R++ ++TT RSD R +V + + D RRDFT+NA+
Sbjct: 61 LGAMRRREDGIEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPD 120
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ +D GG NDL ++ + +D LR++R RF A G I+ + A
Sbjct: 121 LEFVDPFGGANDLVKGVLRTPVNPRQSFDDDPLRMMRAVRFVAQLGF-RIEPETAEALSD 179
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + I+S+ER+ E+ KLL + P I + + G+ +F ++ + L+ + +
Sbjct: 180 MVERIDIVSAERVRDELTKLLLSDRPRAGIEALVDSGLADIVFPEIPALQLE-IDEHHRH 238
Query: 253 EQVFEWK--------------------IDSLLRFIVLISWQDKK---------------- 276
+ VFE D LR L+ K
Sbjct: 239 KDVFEHTMIVVDRAVALETGPDGPVPAPDLTLRLAALMHDIGKPKTRRFEPGGKVSFHHH 298
Query: 277 ------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330
K + + N + K +
Sbjct: 299 DAVGAKMTRKRLKALRFDHHMIEDVSELVNLHLRFHGYVEEPWTDSAVRRYVKDAGPLYE 358
Query: 331 IFLALHYNNLTHQDTCF-------------ILQVLSDIIHWKKPLFPLTGDDVVK-YGIP 376
L + T Q+ ++ L + L GD++++ GI
Sbjct: 359 RLNRLTRADATTQNRRKAMIFSSAMDEMEQRVRDLKKKEDFDAIRPDLNGDEIMQLLGIE 418
Query: 377 PGKKVGNILVHCKQEWINSS 396
PG VG H + +++
Sbjct: 419 PGPMVGRAYKHMLEYRLDNG 438
>gi|254491967|ref|ZP_05105145.1| poly(A) polymerase subfamily [Methylophaga thiooxidans DMS010]
gi|224462782|gb|EEF79053.1| poly(A) polymerase subfamily [Methylophaga thiooxydans DMS010]
Length = 456
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 64/233 (27%), Positives = 110/233 (47%), Gaps = 12/233 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +N+L L ++ +VGG VRD L+ +D D++T LP++V ++F ++R
Sbjct: 42 SQNALNVLYTLKDAGFEAYLVGGCVRDLLLGHEPKDFDVSTNALPEQVHKLFRRSRL--- 98
Query: 72 PTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + + ++ ++ T R D+ GR + + D+ RRDFT+N
Sbjct: 99 -IGRRFKLVHVRFGREVIEVATFRAPPGANGDVDAQGRIVQDNVYGTLEQDAWRRDFTVN 157
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY + + +IDY GG+ DL I+ IGD R ED +R+LR RF A G +D+
Sbjct: 158 ALYYNIRDFSIIDYTGGIEDLNAGVIRLIGDVETRYREDPVRMLRALRFVAKLG-LQVDA 216
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
LK + R++ E KL + N + + G+F ++
Sbjct: 217 KTEQGIFNWGSLLKDIPPARLFDETLKLYLSGNAAVTHELLCHYGLFDHMYPQ 269
>gi|313680041|ref|YP_004057780.1| polynucleotide adenylyltransferase region [Oceanithermus profundus
DSM 14977]
gi|313152756|gb|ADR36607.1| Polynucleotide adenylyltransferase region [Oceanithermus profundus
DSM 14977]
Length = 820
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 83/432 (19%), Positives = 139/432 (32%), Gaps = 57/432 (13%)
Query: 1 MVSIVQHKWFH------DSDLINILSLLNKG--EDKSCIVGGAVRDSLMNLSVQDIDIAT 52
M Q W + +L L + +VGGAVRD+L+ S D+D+
Sbjct: 421 MPPAEQAAWTERVRQGLSEGVREVLDALAEAYPRGSVYLVGGAVRDALLGESSPDVDLVL 480
Query: 53 TI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFT 110
P V R ++ ++GT D+ T R + V
Sbjct: 481 EGLDPGEVARFLTRRFGGSYGVHFAFGTAHARLGTGVEVDLATAREEEYPSPGALPRVRP 540
Query: 111 RDWKADSLRRDFTINALYADQQGKV---IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167
D RRDFT+NA+ ID GGL+DL R ++ + +ED R+
Sbjct: 541 STLNRDLARRDFTVNAMAYRIAPPPEALIDPFGGLHDLEARMLRPLHP--LSFIEDPSRV 598
Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH--- 224
LR R A G + K+ ++ R+ E+ L +PL +
Sbjct: 599 LRGLRLAARLGFRFHPEAERQIEELRKRPPGSAATSRLRRELMLALAEPSPLRVLRLAER 658
Query: 225 --MYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282
+ +V L ++ + ++ L ++L S + +
Sbjct: 659 YGLLEALYGFRPDPEVWAA----LERLEAQKPERSVPPEAYLYLLLLSSPDPEALVRR-- 712
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
F P+ L + ++ E + L + +
Sbjct: 713 --FGWPQRYLVHLGMLRQPPDRPE--ALREGGEALALAFAARFPDRAEWVW--------- 759
Query: 343 QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402
KP L G D+++ G+ PG VG IL + +E
Sbjct: 760 -----------------KPTRRLRGRDLIELGMEPGPAVGRILREVEAARARGEVSGYEE 802
Query: 403 DLHHLLRKLIAS 414
+L L RKL+
Sbjct: 803 EL-TLARKLMED 813
>gi|89890534|ref|ZP_01202044.1| polyA polymerase [Flavobacteria bacterium BBFL7]
gi|89517449|gb|EAS20106.1| polyA polymerase [Flavobacteria bacterium BBFL7]
Length = 477
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 67/462 (14%), Positives = 150/462 (32%), Gaps = 56/462 (12%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRV 59
M + I ++ ++GG VRD + + DIDI +
Sbjct: 1 MEQLQFKDAISHPVFKTISDAAAAIGVEAYVIGGFVRDYFLKRGAKQDIDIVAVGSGIEL 60
Query: 60 MRIFSKTRYKV--IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
+ + + + +YGT + + R + T +V + D
Sbjct: 61 AQKVAALLPQSTKVSVFKTYGTAMVKTDDFELEFVGARKESYTRDSRNPIVEDGTLEDDQ 120
Query: 118 LRRDFTINALYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
RRDFTINA+ + D G+ DL + IK + + +D LR++R RF
Sbjct: 121 NRRDFTINAMAFSLSSQNYGQLVDPFNGMVDLEKKIIKTPLEPNVTYSDDPLRMMRAIRF 180
Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
A I+ + +KI+++ERI +E+NK++ P + + + G+
Sbjct: 181 AAQLNF-RIEDTSFHSIKNNASRIKIITNERIITELNKIMMCDEPSHGFILLEKTGLLSY 239
Query: 234 IFLDV-----------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282
++ Q+ + + + + + LR+ L+ K +
Sbjct: 240 FLPELTALKGIEEIEGQKHKDNFYHTLEVVDNISRNTDNLWLRWAALLHDIGKAPTKKFS 299
Query: 283 KKFSLP-----------------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
KK + F+ + +
Sbjct: 300 KKVGWTFHGHEFKGAKMVYHLFKRLKMPLNDKMKFVQLMVRMSSRPIAVIDESATDSAVR 359
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLT 366
++ + L ++T ++ + + + H + P++
Sbjct: 360 RLVHDAGDHIEDLMTLCEADITTKNPFRFKKYHSNFQKVRDKIVEVEERDHVRNFQPPVS 419
Query: 367 GDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
G+++++ + + P +++G I K ++ + +
Sbjct: 420 GEEIMEAFNLQPCREIGMIKSAIKNSILDGHIPNEHDAAYAF 461
>gi|329914129|ref|ZP_08276062.1| Poly(A) polymerase [Oxalobacteraceae bacterium IMCC9480]
gi|327545195|gb|EGF30466.1| Poly(A) polymerase [Oxalobacteraceae bacterium IMCC9480]
Length = 455
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 12/225 (5%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
S+ I + L + K+ +VGGAVRD L+ + +D DIAT P++V ++F +
Sbjct: 34 PKLVSSNAIRVTQGLQQAGFKAFLVGGAVRDLLLGIKPKDFDIATNATPEQVRKLFRRAF 93
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRD 121
+ + ++ + ++TT R GR + + D++RRD
Sbjct: 94 I----IGRRFQIVHVMFGQDLLEVTTFRGASVDAAPKDEHGRVLRDNTFGEQHEDAIRRD 149
Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+Y D + + DY GG+ D+RN+T++ IG R ED +R+LR RF A
Sbjct: 150 FTINAMYYDPDTQTVLDYHGGMADIRNKTLRIIGVPEERYREDPVRLLRVVRFAAKLDF- 208
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
ID+ + + + R++ E+ KLL + + + + H+
Sbjct: 209 TIDAATAAPIKTMAPLINNVPAARVFDEMLKLLMSGHAMACLHHL 253
>gi|227358020|ref|ZP_03842362.1| polynucleotide adenylyltransferase [Proteus mirabilis ATCC 29906]
gi|227161755|gb|EEI46787.1| polynucleotide adenylyltransferase [Proteus mirabilis ATCC 29906]
Length = 507
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 76/412 (18%), Positives = 139/412 (33%), Gaps = 47/412 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN ++ +VGG VRD L+ +D DIAT P+ V R+F +R
Sbjct: 78 SDNALKVLYRLNNSGFQAYLVGGGVRDLLLGKKPKDFDIATNATPEEVRRLFRNSRL--- 134
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118
+ I+ + ++ T R G + + D++
Sbjct: 135 -VGRRFRLAHIMFGPEVIEVATFRGSHEDHETSDRNQSQQAQSGMLLRDNIFGSIEEDAI 193
Query: 119 RRDFTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+N+LY + GGL DL++ TI+ IG R ED +R+LR RF +
Sbjct: 194 RRDFTLNSLYYGVDDFAVRDYVGGLADLKSGTIRLIGSPETRYREDPVRMLRAIRFASKL 253
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
I + + L+ + S R++ E KLL+ + M + + + +F
Sbjct: 254 DM-RIAPETAEPISQLAPLLRNIPSARLFEESLKLLQTGHGYKTYRLMRHFQLLEPLFP- 311
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+ A ++ E + + R I + I +
Sbjct: 312 ------------LVASRITEQQDTPMERMIEQVLKNTDYRISKEMRVNPAFLFAAMLWYP 359
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL----- 352
S F + + ++ + + T +D + Q L
Sbjct: 360 LVEHAEKLAQESGLSYYDAFSMAMNDILDEQCRTIAIPKRITTTMRDIWQLQQRLPKRQG 419
Query: 353 -SDIIHWKKPLFPLTGD-DVVKY--GIPPGKKVGNILVHCKQEWINSSFQLS 400
+ P F D+++ + L W + +
Sbjct: 420 RRANKLLEHPKF--RAAFDLLELRANVQRNPD----LEALAAWWADFQISNN 465
>gi|197263544|ref|ZP_03163618.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|205357523|ref|ZP_02571164.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|197241799|gb|EDY24419.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|205331471|gb|EDZ18235.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
Length = 454
Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 34 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 210 MH-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 268
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 269 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 315
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 316 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 375
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 376 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 402
>gi|115311614|sp|Q8ZRQ8|PCNB_SALTY RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid
copy number protein
Length = 465
Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 45 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 101
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 102 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 160
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 161 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 220
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 221 MH-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 279
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 280 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 326
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 327 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 386
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 387 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 413
>gi|256820884|ref|YP_003142163.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Capnocytophaga ochracea DSM 7271]
gi|256582467|gb|ACU93602.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Capnocytophaga ochracea DSM 7271]
Length = 469
Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats.
Identities = 79/462 (17%), Positives = 158/462 (34%), Gaps = 60/462 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKT-- 66
+ I + + +S ++GG VRD L+ +DID+ + + ++
Sbjct: 7 LSNPIFKLISDISAEISLESYVIGGFVRDYLLEKKLPKDIDVVSIGSGISLAEKVAERLP 66
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ ++GT I + R + V + + D RRDFTINA
Sbjct: 67 NAPKVSIFKNFGTAMIKADGLDIEFVGARRESYEANSRKPYVESGTLQDDQNRRDFTINA 126
Query: 127 LYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ ++ID GL DL+ + I+ D +D LR++R RF I
Sbjct: 127 MAFSLNRDTFGELIDPFDGLGDLKRKLIRTPLDPDITYSDDPLRMMRAIRFATQLNF-KI 185
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ L A K+ LKI+SSERI E+NK+L + P + +Y G+ I ++
Sbjct: 186 EKQSLKAITDNKERLKIISSERIVEELNKILASPKPSIGLKLLYETGLLHYILPELIALQ 245
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSL 287
Q + + + + E + LR+ L+ K F
Sbjct: 246 GVEEHDGQRHKDNFWHTLEVVDNISENTDNLWLRWAALLHDIGKAPTKRFDKKIGWTFHG 305
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI-------------------AK 328
+ ++ + + + +I +
Sbjct: 306 HEFVGSKMVYHLFKRLRMPLNDKMKYVQKIVKMSSRPIIIADDIVTDSAVRRLVFDAGEE 365
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YG 374
+ + L ++T ++ + + H + P++G+++++ +
Sbjct: 366 FEDLMTLCEADITTKNPKKFKKYHDNFQIVRQKVVEVEEKDHIRNFQPPVSGEEIMQTFN 425
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL----LRKLI 412
+PP + VG + K+ + E +K+
Sbjct: 426 LPPSQPVGMLKEAIKEAILEGKIPNEYEAAKAFMMEKAKKMK 467
>gi|192359588|ref|YP_001980912.1| polynucleotide adenylyltransferase [Cellvibrio japonicus Ueda107]
gi|190685753|gb|ACE83431.1| polynucleotide adenylyltransferase [Cellvibrio japonicus Ueda107]
Length = 457
Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats.
Identities = 75/371 (20%), Positives = 142/371 (38%), Gaps = 21/371 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ I+ L++ ++ +VGG VRD L+ +D D+AT P+ V R+F R
Sbjct: 45 SQAALKIIKQLHEAGFEAYLVGGGVRDLLLGGHPKDFDVATNAKPEEVRRLFRGARI--- 101
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--------DWKADSLRRDFT 123
+ + + ++ ++TT R D + + + D++RRDF+
Sbjct: 102 -VGRRFQIVHVRIGREMIEVTTFRGHHDEDLNHTRNEDGMLLRDNVYGTLETDAMRRDFS 160
Query: 124 INALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NALY D + +IDY GG+ DL+ RT++ IG+ R ED +RILR RF A G +
Sbjct: 161 VNALYYDLKTFSIIDYCGGMEDLKKRTLRIIGEPVTRYKEDPVRILRALRFAAKLGF-AL 219
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----- 237
+ L +S R++ E+ KL + M + +++F
Sbjct: 220 EPSTAKPIRPLGNLLLNVSEARLFEEVLKLFLNGSATATFNLMREYDLLQQLFPGTDEAL 279
Query: 238 -VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
E ++ +L ++ A + D + + + + +
Sbjct: 280 KANEPAMAELVELCMANTDKRIRSDKTVTPAFIYAALLWPGLQRRYLQLQDSYTPAQAWN 339
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
NQ+ K+ ++ + ++ L L D ++
Sbjct: 340 QAAQDVINQQLTRTSIPKRFLIPM-REIWDLQQRLPNRLGLRALRLLDHPRFRAAYDFLL 398
Query: 357 HWKKPLFPLTG 367
++ PL G
Sbjct: 399 MREEAGEPLDG 409
>gi|261278702|pdb|3H37|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form I
gi|261278703|pdb|3H37|B Chain B, The Structure Of Cca-Adding Enzyme Apo Form I
Length = 441
Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats.
Identities = 87/414 (21%), Positives = 152/414 (36%), Gaps = 25/414 (6%)
Query: 12 DSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D ++N+ LL K D+ +VGG VRD L+ + DIDI +
Sbjct: 16 DPKILNLFRLLGKFGDEVNXPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFL 75
Query: 68 YKVIPTSISYGTIK-IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + T + DI T R + V K D RRDFTINA
Sbjct: 76 PGKLVKHDKFXTASLFLKGGLRIDIATARLEYYESPAKLPDVEXSTIKKDLYRRDFTINA 135
Query: 127 LYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
K +ID+ GG DL+ I+ + ++D RILR RF + +
Sbjct: 136 XAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHT--LSFVDDPTRILRAIRFEQRFDFRIE 193
Query: 183 DSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE------IF 235
++ + ++G + + R+ E+ K+LE KNPL +I + K
Sbjct: 194 ETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRXAQFDVIKHLFPKTYYT 253
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
E + + E+ F V + + D +S + ++SL R + +
Sbjct: 254 PSXDEKXENLFRNIPWVEENFGEVDRFYAVLHVFLEFYDDESWKEVRDRYSLRRNLINEI 313
Query: 296 ISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ LS Y V + FLA ++L++ +
Sbjct: 314 RHVEKSAPALLEXLSERVPASFVYPLVKGVSNETICHFLAYLSGEKEGLFKSYLLKIKNT 373
Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ + G+ +++ GI GK +G +L + ++ + +E L +L
Sbjct: 374 KLEK------INGEYLIRKGITSGKIIGEVLEKILXKKLDGDTRDEEEILEEVL 421
>gi|62178754|ref|YP_215171.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|205351523|ref|YP_002225324.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207855700|ref|YP_002242351.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224582031|ref|YP_002635829.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|62126387|gb|AAX64090.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|205271304|emb|CAR36095.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|206707503|emb|CAR31777.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224466558|gb|ACN44388.1| polyA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|322713208|gb|EFZ04779.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|326626549|gb|EGE32892.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
Length = 472
Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 286
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 287 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 333
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 334 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 393
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 394 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 420
>gi|134095805|ref|YP_001100880.1| poly(A) polymerase I [Herminiimonas arsenicoxydans]
gi|133739708|emb|CAL62759.1| Poly(A) polymerase [Herminiimonas arsenicoxydans]
Length = 453
Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats.
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 12/225 (5%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
++ I + S L + K+ +VGGAVRD L+ + +D DIAT P++V ++F +
Sbjct: 34 PKLVSANAIRVTSTLQEAGFKAFLVGGAVRDLLLGVKPKDFDIATNATPEQVKKLFRRAF 93
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRD 121
+ + ++ + ++TT R GR + + D+LRRD
Sbjct: 94 I----IGKRFQIVHVMFGQDLLEVTTFRGSSSDGAPKDEHGRVLRDNTFGEQHEDALRRD 149
Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+Y D + + DY GG+ D+R RT++ IG R ED +R+LR RF A
Sbjct: 150 FTINAMYYDPATQTVLDYHGGIADIRTRTLRIIGVPEARYREDPVRLLRVVRFAAKLNF- 208
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
I D + + + R++ E+ KLL + + L + +
Sbjct: 209 AIAPDTSAPIAVMAPLINNVPTARVFDEMLKLLMSGHALACLQQL 253
>gi|258645720|ref|ZP_05733189.1| polyA polymerase [Dialister invisus DSM 15470]
gi|260403089|gb|EEW96636.1| polyA polymerase [Dialister invisus DSM 15470]
Length = 500
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 73/367 (19%), Positives = 141/367 (38%), Gaps = 20/367 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + I++ L ++ VGG VRD L+ + D DI T+ P+ ++ + + +K +
Sbjct: 29 DRNASAIINALENSGYEAYAVGGCVRDLLLAKAPHDWDITTSAKPEEIISVMGRNGWKTV 88
Query: 72 P-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALY 128
+GT+ ++ +++TT R++ + T K D RRDFT+NAL
Sbjct: 89 DGAGRRFGTVIVVINHIAYEVTTFRNEFYGQDSHRPENITFSSTLKEDLSRRDFTVNALA 148
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ G V DY G DL N+ ++ +G A R ED LR+ R RF S
Sbjct: 149 LGRDGVVYDYFDGTKDLENKKLRTVGKAEERFREDALRLFRACRFIGQLDFMADKSLVRG 208
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE------IS 242
+ + + LS ER+ E+ KLL + + + G+ + +
Sbjct: 209 MASAFDR-VSGLSLERVREEVEKLLVSPFAARGLDLLVRTGLNECSCRIRENGRTEAVRI 267
Query: 243 LDQLSQVIEA-EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L +LS +++ +Q K D + +++ +L A + + +
Sbjct: 268 LPELSHLVDLPQQKKFHKFDGWYHTLAVVNAAPPTLLLRWAALLHDVGKGMPGVRRIKDG 327
Query: 302 NFNQKTLS---------IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
+ I + + +V+ ++ N+ + L+ L
Sbjct: 328 KYTDYGHDLKGAEMAAEIFRRWRFPAAFAKRVVWLVENHMRYHYFANVPEANVEKWLRQL 387
Query: 353 SDIIHWK 359
+ +
Sbjct: 388 ARGKQFS 394
>gi|319951891|ref|YP_004163158.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Cellulophaga algicola DSM 14237]
gi|319420551|gb|ADV47660.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Cellulophaga algicola DSM 14237]
Length = 473
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 77/466 (16%), Positives = 154/466 (33%), Gaps = 57/466 (12%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRV 59
M + + I + + ++GG VRD L+ + +DIDI +
Sbjct: 1 MTHTNHEQALLNPIFKIISTAAKELNLDCYVIGGFVRDYLLARGTAKDIDIVAIGSGIEL 60
Query: 60 MRIFSKT--RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
+ + + ++GT I + R + + VV + D
Sbjct: 61 AKKVASKLKGKPEVSVFKNFGTAMIKYEDIELEFVGARKESYHEDSRKPVVEDGSLEDDQ 120
Query: 118 LRRDFTINALYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
RRDFTINAL D G+ DL ++ IK +D LR++R RF
Sbjct: 121 KRRDFTINALAISLNEPTYGTLLDPFNGIQDLEDKIIKTPLAPGITYSDDPLRMMRAIRF 180
Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
I+ L A + K +KI+S ERI E++K+L +K P ++ +
Sbjct: 181 ATQLDF-KIEDISLNAITEHKDRIKIISKERIVDELHKILASKIPSLGFSLLHKTELLGY 239
Query: 234 IFLDV-----------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282
I ++ Q + + + + + LR+ L+ K
Sbjct: 240 ILPELTALQGIEEIEGQRHKDNFWHTLEVVDNIALNTDNVWLRWAALLHDIGKAPTKRFD 299
Query: 283 ----KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------ 326
F I ++ + + L + +I
Sbjct: 300 KKIGWTFHSHEFIGSKMVYKLFKRLRMPLNDKMKFVQKMVLLSSRPIILSEDFATDSAVR 359
Query: 327 -------AKLKIFLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLT 366
++ + L ++T ++ + + + H + P++
Sbjct: 360 RLIFDAGENIEDLMTLCEADITTKNPKKQKRYQNNFKLVRQKIVEVEERDHVRNFQPPIS 419
Query: 367 GDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDL-HHLLRK 410
G+ +++ + + P K++G I K+ + + +L+K
Sbjct: 420 GEQIMETFNLKPSKEIGIIKEAIKEAILEGEIPNEYDAAYQFMLKK 465
>gi|261379064|ref|ZP_05983637.1| poly(A) polymerase [Neisseria cinerea ATCC 14685]
gi|269144521|gb|EEZ70939.1| poly(A) polymerase [Neisseria cinerea ATCC 14685]
Length = 453
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 10/235 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAEKVICRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEVIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IG+A R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGMADIAERKLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSQATAGP 215
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
+ + K R++ EI KLL + + + + + +I +++
Sbjct: 216 IAESIGRL-KHEPVARLFDEIMKLLFSGHARECLKRLKEFDVPDDIHPLFNALNI 269
>gi|221111472|ref|XP_002167859.1| PREDICTED: similar to tRNA nucleotidyl transferase, CCA-adding, 1
[Hydra magnipapillata]
Length = 297
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 102/287 (35%), Positives = 160/287 (55%), Gaps = 5/287 (1%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
+ K+ +VGG VRD++ + +D+DI TT+LP+ + R+F + +KVIPT I +G
Sbjct: 9 FKTIKSKNHKARLVGGVVRDAIFGIESKDVDIITTMLPEEITRVFEELGHKVIPTGIKHG 68
Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-ID 137
T+ I+ + F+ITTLR D+ +DGR+++V FT D+ D+LRRDFTINAL + D
Sbjct: 69 TVSILYNNELFEITTLRKDISSDGRHSEVEFTGDFHVDALRRDFTINALSYCPFEETVYD 128
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
Y G+ L+ +KFIG+ RI EDYLRILRFFRF+ +G+ ID D L A IK + +
Sbjct: 129 YFNGIEHLKLGCVKFIGNPESRIQEDYLRILRFFRFYGKFGKI-IDKDSLDACIKYRSSI 187
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
K LS ERI SE++ +L N + I M + I +E+F + I +++ ++ + +F
Sbjct: 188 KKLSRERIKSELDSILNLPNYFDVIRLMNDHSILQEVFP-ISTIDIEKFTKANDIANIFG 246
Query: 258 --WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
I + + +S L A+ + + + N
Sbjct: 247 VLLNIKTKYALLFELSGIKNSYYLKKAQWYQFNNDWGCGIKFKIKIN 293
>gi|157364565|ref|YP_001471332.1| CBS domain-containing protein [Thermotoga lettingae TMO]
gi|157315169|gb|ABV34268.1| CBS domain containing protein [Thermotoga lettingae TMO]
Length = 875
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 77/416 (18%), Positives = 139/416 (33%), Gaps = 21/416 (5%)
Query: 13 SDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ +L L + D+ VGG VRD LM DIDI + + ++
Sbjct: 459 KKISILLRQLGRFGDEIGLPVYTVGGFVRDLLMGNPNYDIDIVVEKDGLSLADLAARKLN 518
Query: 69 KVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + T + C D+ T R++ V K D RRDFTINA+
Sbjct: 519 AKLVKYEKFLTASLFCKDGLRIDVATARTEYYEAPTELPQVEVSTIKKDLYRRDFTINAM 578
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFI--GDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
K + + + +ED RILR RF +G K
Sbjct: 579 AIKLNQKDFGLLIDFFGAKKDLDSKLIRCLHTLSFVEDPTRILRAVRFETRFGFKIEQQT 638
Query: 186 GLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----Q 239
+ +G + +S +R+ E K+LE K+ A+ + + + K +F V
Sbjct: 639 ARLMLDAVHQGYLEKVSGQRLRQEFEKILEEKSVFEALKRLSDFEVIKHMFPGVFYTSSM 698
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
E L L + + F K++ + + +++L ++ +
Sbjct: 699 EEKLRALFMFLPWAENFFEKLNRFYAVMYVFLEYHSENLLEEIRQRYGLSHCFVSELKVI 758
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ I + +Y + Y + Q + + K
Sbjct: 759 KKMIVPLSKMISLHMEFSDIYRVTQSFSSEAFCYVASYLDSQAQQY-----LKEFLEKVK 813
Query: 360 KPLFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ G + + + PG+ VG+IL ++ E+ +KLI S
Sbjct: 814 GTRLKVNGGYLVKNFNLKPGRLVGDILEKLYCAKLDGVITDESEE--EYAKKLIES 867
>gi|326621884|gb|EGE28229.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. 3246]
Length = 454
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 34 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 268
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 269 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 315
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 316 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 375
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 376 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 402
>gi|288921203|ref|ZP_06415489.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Frankia sp. EUN1f]
gi|288347410|gb|EFC81701.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Frankia sp. EUN1f]
Length = 491
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 85/453 (18%), Positives = 160/453 (35%), Gaps = 57/453 (12%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +VGG+VRDSL+ + D+D T P+RV+ I
Sbjct: 24 PADELGRIFADHGHALYLVGGSVRDSLLGRAQSAPDLDFTTDARPERVLEITRGWAEATW 83
Query: 72 PTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I++GT+ + R F++TT R R V + D +RRDFT+NA+
Sbjct: 84 EAGIAFGTVGLARRGVRFEVTTYRSETYDRTSRNPTVTYGDGLHGDLVRRDFTVNAMAVS 143
Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
G +D GG+ DL ++ G +D LRILR RF A G +
Sbjct: 144 VPGHDFVDLFGGMADLARGVLRTPGVPEASFDDDPLRILRAARFEAALGLTPVPELVAAM 203
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------- 238
+A++ +KI+S ER+ E+ KL+ + NP+ + + + GI + ++
Sbjct: 204 RSRAER-IKIVSPERVRDELRKLIASPNPIAGLERLVDVGIADIVLPELGAMRMEIDEHH 262
Query: 239 --QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281
+++ ++ + +A + + D +LR+ L+ K
Sbjct: 263 QHKDVYAHTMTVLSQAMALEDDGPDEILRWAALLHDIGKPRTRRHIPGGRVSFHHHEVVG 322
Query: 282 -------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
P+++ + S + E Y++ + +L
Sbjct: 323 RDMTRRRLTALRFPKDVTDAICSLVFLHLRFHGYGSGEWTDSAVRRYVHDAGPQLNRLHK 382
Query: 332 FLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + + + L+GDD++ +PP +
Sbjct: 383 LVRSDCTTRNRRKAESLARTYDSLEERIADLAASEEIAAIRPELSGDDIMALLALPPSRL 442
Query: 381 VGNILVHCKQEWINSSFQLS---QEDLHHLLRK 410
VG H + +L R+
Sbjct: 443 VGKAREHMLDVRFERGLLGREAAEAELLRWARE 475
>gi|91216560|ref|ZP_01253526.1| putative polyA polymerase [Psychroflexus torquis ATCC 700755]
gi|91185354|gb|EAS71731.1| putative polyA polymerase [Psychroflexus torquis ATCC 700755]
Length = 474
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 77/454 (16%), Positives = 159/454 (35%), Gaps = 61/454 (13%)
Query: 17 NILSLLNKG----EDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKT--RYK 69
I ++L++ ++ ++GG VRD + +DID+ + + S+
Sbjct: 13 KIFNILSEAADDINVEAYVIGGFVRDFFLKRGKAEDIDVVAVGSGIELAKKVSEKLPGKP 72
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ +YGT + + R + T+ V D RRDFTINAL
Sbjct: 73 PVKVFKTYGTAMLKIFDLEVEFVGARRESYTEDSRNPKVEQGTLADDQNRRDFTINALAL 132
Query: 130 DQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
K++D GL DL+ + IK D +D LR++R RF + ID
Sbjct: 133 QLNKKDFGKLLDPFKGLEDLKTQLIKTPLDPEVTFSDDPLRMIRAIRFASQL-HFKIDQK 191
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
+ A + + I+S ERI +E+NK+L+++ P +++ + + I ++
Sbjct: 192 SIQAIKDHSERIDIVSKERIVTELNKILKSEKPSVGFKLLHDTNLLQRILPELTHLEGID 251
Query: 239 ----QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSLPRE 290
Q+ + + + + D LR+ L+ K F
Sbjct: 252 EIDGQKHKDNFWHTLEVVDNISLETNDVWLRWAALLHDIGKAPTKRFHKKIGWTFHGHEF 311
Query: 291 IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI-------------------AKLKI 331
++ ++ + L + + L
Sbjct: 312 KGSKMVYQLFKRLKLPLNDKMKLVQKLVLLSSRPIAIVDDDVTDSAVRRLIFDTGDHLDD 371
Query: 332 FLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPP 377
+ L ++T ++ + ++ + P++G ++++ + I P
Sbjct: 372 LMMLCEADITTKNPKRYKKYHNNFKVVRHRIQEVEERDKVRNFQPPVSGKEIMETFQIEP 431
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHL-LRK 410
++VG I K+ ++ E L++
Sbjct: 432 CREVGEIKAKIKEAILDGDIPNDYEAAFQYMLKE 465
>gi|300087223|ref|YP_003757745.1| polynucleotide adenylyltransferase-domain containing protein
[Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299526956|gb|ADJ25424.1| Polynucleotide adenylyltransferase region [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 417
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 68/411 (16%), Positives = 137/411 (33%), Gaps = 23/411 (5%)
Query: 14 DLINILSLL----NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + I+S + + +VGG VRD L+ + D+D+A + R S R +
Sbjct: 18 EALQIISQASTSAERLGFRVFLVGGVVRDILLERNGFDLDLAVEGDAIELARSLSADRAR 77
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I + T ++ + DI R + T V + D RRDFT+NA+
Sbjct: 78 -ITVHHRFNTARVGFDSYHLDIARTRCETYTRPGSLPTVRPGTIEDDLGRRDFTVNAMAL 136
Query: 130 DQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ID G DL I+ + +D R+ R R+ +G
Sbjct: 137 SLNRDDYGNLIDRHDGRGDLEAGLIRVLHA--ASFTDDATRLWRAIRYEQRFGFAIEPHT 194
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ + + I + + + +L P G+ + +
Sbjct: 195 LEIFRRDINRIVDITPDRQRYE-LECVLSEARPETVFSRADELGLLNRWHPALS--GDEW 251
Query: 246 LSQVIEAEQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
L Q + + + L + ++K L+ K S + + + +
Sbjct: 252 LKQSCRRLRAIQAATPSAYLALLCWRLDAEQKDSLARTLKLSRRQYRVLQESTVIRDSLS 311
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
S ++ L AL + + + W +
Sbjct: 312 LLDSSQAPPSRIASLLRSLDTDVLSAARAALEPGRS-------VENIEQYLATWSRVTPV 364
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
L G+++++ G+P G +G +L + I+ + S++ H +R +
Sbjct: 365 LNGENLLELGVPRGPDIGRLLEELRDLTIDGAI-DSRQAEEHHVRDWLTRR 414
>gi|197249173|ref|YP_002145185.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|200386557|ref|ZP_03213169.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|197212876|gb|ACH50273.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|199603655|gb|EDZ02200.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
Length = 454
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 34 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 268
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 269 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 315
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 316 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 375
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 376 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 402
>gi|194447575|ref|YP_002044169.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|205359247|ref|ZP_02668314.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|194405879|gb|ACF66098.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|205337551|gb|EDZ24315.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|312911154|dbj|BAJ35128.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321222237|gb|EFX47309.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
Length = 437
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 192
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 193 MH-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 251
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 252 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 298
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 299 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 358
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 359 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 385
>gi|301062567|ref|ZP_07203205.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[delta proteobacterium NaphS2]
gi|300443332|gb|EFK07459.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[delta proteobacterium NaphS2]
Length = 430
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 66/411 (16%), Positives = 122/411 (29%), Gaps = 20/411 (4%)
Query: 13 SDLINILSLLNK----GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
++ IL K +VGG VRD + D+DI + R F+K+
Sbjct: 8 KKVLRILKEFGKIADSQGYGIYLVGGLVRDIFLKFDNLDVDIVIEGNGIKFAREFAKSHP 67
Query: 69 KVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + +GT +I D+ T R + +V T K D RRDFT+N L
Sbjct: 68 VRVRSHQKFGTAVLIFPDGFKVDVATARIEYYKSPGAPPIVETSSLKLDLYRRDFTMNTL 127
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEK--NID 183
+ + + + +ED R+LR RF +G +
Sbjct: 128 AISLSKRSFGTLIDYFGAQKDIKDKALRVLHNLSFVEDPTRMLRAIRFEQRFGFTIGKLT 187
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH----MYNGGIFKEIFLDVQ 239
+ + K S + L E + + D
Sbjct: 188 LGLMKTAAKMDWTDSRASRRMLGELKLILKEPNRISALVRLKEFDLLKFASPALHLNDTV 247
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+I L+++++VI + + + + + R
Sbjct: 248 KILLEEINEVIAWYHLLFLEEPIAEWKVHWYGLTSGMDTETFERLTHEIGAGRLSPRGQA 307
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
F + L +A N + + K
Sbjct: 308 EQQFMDTLFRFDGSDYDLFAILRSYDTEMLLYLMAKAKNERMKRL------LSQFFTQLK 361
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ G+D++K G PG I Q +N Q ++++ L+++
Sbjct: 362 GKKIRIDGNDLLKMGFQPGPIFKEIFERLLQARMNQETQKKEDEI-ALVKQ 411
>gi|114048784|ref|YP_739334.1| poly(A) polymerase [Shewanella sp. MR-7]
gi|113890226|gb|ABI44277.1| poly(A) polymerase [Shewanella sp. MR-7]
Length = 435
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 64/240 (26%), Positives = 101/240 (42%), Gaps = 16/240 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ L +D D+ T P+ + ++F R
Sbjct: 14 SENALKVLYRLNKSGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRNCRV--- 70
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R +GR + + D+ RRD
Sbjct: 71 -VGRRFRLAHIVFGRDVIEVATFRGHHGDSNEKISKANAEGRLLRDNVYGEIDEDAERRD 129
Query: 122 FTINALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D I GG DL+ T++ IGD R ED +R+LR RF
Sbjct: 130 FTVNALYYDISDYSIRSYGGGMDDLKAGTLRLIGDPETRYREDPVRMLRAVRFATKLSM- 188
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
ID + LK + + R++ E+ KL A + M +F +F V
Sbjct: 189 TIDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAMANFEMMQEYKLFAPLFPQVDA 248
>gi|152981224|ref|YP_001354564.1| poly(A) polymerase [Janthinobacterium sp. Marseille]
gi|151281301|gb|ABR89711.1| poly(A) polymerase [Janthinobacterium sp. Marseille]
Length = 455
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 12/225 (5%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
++ + + S L + K+ +VGGAVRD L+ + +D DIAT P++V R+F +
Sbjct: 34 PKLVSANAVRVTSTLQQAGFKAFLVGGAVRDLLLGVKPKDFDIATNATPEQVKRLFRRAF 93
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRD 121
+ + ++ + ++TT R GR + + D+LRRD
Sbjct: 94 I----IGKRFQIVHVMFGQDLLEVTTFRGASTEAAPKDEHGRVLRDNTFGEQHEDALRRD 149
Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+Y D + + DY GG+ D+RN+T++ IG R ED +R+LR RF A
Sbjct: 150 FTINAMYYDPATQTVLDYHGGMADIRNKTLRIIGVPEARYREDPVRMLRVVRFAAKLNF- 208
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
+ID D + + + R++ E+ KLL + + L + +
Sbjct: 209 SIDPDTSAPIRVMAPLINNVPAARVFDEMLKLLMSGSALACLQQL 253
>gi|291276560|ref|YP_003516332.1| putative poly(A) polymerase [Helicobacter mustelae 12198]
gi|290963754|emb|CBG39589.1| putative poly(A) polymerase [Helicobacter mustelae 12198]
Length = 379
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 92/407 (22%), Positives = 158/407 (38%), Gaps = 37/407 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
++ I +L ++ ++GG VRD L+++ D D A + P + I
Sbjct: 6 ENVQKIFEILR--GEEIYLIGGCVRDMLLSIKPLDYDFACVLRPQILRDKLHANGIATID 63
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFT-RDWKADSLRRDFTINALYAD 130
I YGT+ ++ + ++ITT R + + R+ V + D RRDF+INA+
Sbjct: 64 VGIRYGTLGVLLEGEVYEITTFRKEGVYLDARHPSSVEFAKSLAEDVRRRDFSINAIAYH 123
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+G ++D VGG+ DL + ++ IGDA R ED LRILR F A +G +S+ A
Sbjct: 124 PKGGIVDLVGGVQDLEDGVLRAIGDAQMRFFEDSLRILRGVGFVARFGLHA-ESNTYSAM 182
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L L ERI E K++ A L A+ G+F +F + + +L +
Sbjct: 183 LSFAHLLDSLPRERISKEWEKIICAPFCLRALK--EFAGVFVPLFGESFASHVCRLKDL- 239
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
D+ L I ++ P+ R + +
Sbjct: 240 ---------PDNPLHRAAKILQD-----EALLDALCYPKAARGQIAQMMQWCKKDVFVDK 285
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
K K ++IFL ++ ++L+ + + +D+
Sbjct: 286 ----KSLKYVLAKNPWDLVRIFL------QGDARLAWLEEILAKGEPCRIKDLCIHANDL 335
Query: 371 VKYGIPPGKKV-GNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
++ P K G IL E I +DL R+ S +
Sbjct: 336 EEF---P-PKFRGKILSFLLSEVIEERVANESKDLKCHARQYYKSLE 378
>gi|83814933|ref|YP_446535.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Salinibacter ruber DSM 13855]
gi|83756327|gb|ABC44440.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Salinibacter ruber DSM 13855]
Length = 594
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 77/475 (16%), Positives = 142/475 (29%), Gaps = 78/475 (16%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI--LPDRVMRIFSKT-RYKVI 71
L I + + ++ VGG VRD L+ S D+D T + + +
Sbjct: 57 LRTIGRVAERKGIEAYAVGGMVRDVLLGRSTTDLDFVTVGPETGIALAEAVGEALGGRTA 116
Query: 72 PTSISYGTIKIIC------------RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+GT I + R + V + D R
Sbjct: 117 HVYPKFGTAAIRIPAADALPDDHPDDALVLEFVAARKESYRSDSRKPEVEAGTLEDDQYR 176
Query: 120 RDFTINALYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
RDFT+NA+ D G DL +TI D +D LR++R RF
Sbjct: 177 RDFTVNAMAIHLTPDRFGALLDPFDGRRDLERQTIDTPLDPADTFEDDPLRMIRAARFAT 236
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
E + A ++ILS ERI E++K+LEA P + G+ +
Sbjct: 237 QL-EFRVSDRVFDAMGTQAHRVEILSQERITEELHKMLEADTPSIGFKILEASGVLAHVM 295
Query: 236 LDVQEIS-----------------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI 278
++Q + L+ L V E LR+ L+ K
Sbjct: 296 PEIQRLKGVDVVNGRDHKDNFYHTLEVLDNVAERTSDRPGAETRWLRWAALLHDIAKPKT 355
Query: 279 LSMAKKFSLPRE----------------------------IRYFLISFFNCNFNQKTLSI 310
+ + + + ++
Sbjct: 356 KRFDPEDGWTFHGHEDVGARMIPDLFRKWRLPTDERLDYVQKLVRLHLRPIALADEKVTD 415
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT--------CFILQVLSDIIHWKKPL 362
+++L Y GD + + + NN + ++ + + +
Sbjct: 416 SAVRRLLYEAGDDIDDLMTLVRSDVTSNNPDRRRRYQRAFDRVEEKMRAVEEKDRLRNFE 475
Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED----LHHLLRKLI 412
P+ G ++++ GI G VG ++ ++ + L + + +
Sbjct: 476 PPVDGYEIMETLGIEEGVAVGIAKTWIREAILDGEIPNEHDAAYDHLMAIKDEAL 530
>gi|225848944|ref|YP_002729108.1| poly A polymerase [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644590|gb|ACN99640.1| poly A polymerase [Sulfurihydrogenibium azorense Az-Fu1]
Length = 845
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 84/420 (20%), Positives = 167/420 (39%), Gaps = 31/420 (7%)
Query: 13 SDLINILSLL----NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
D++++L + K KS I+GG VRD ++ DIDI +++ ++K
Sbjct: 441 KDVLDLLKDIGQFSEKLGYKSFIIGGVVRDIVLGKQSLDIDIIVEGSAIDLIKRYAKENN 500
Query: 69 KVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ T I+ D T R + V D RRDFTIN L
Sbjct: 501 LTYHVYPEFMTGNIVFPNGLKLDFATARKEEYDSPGSYPKVEKATLFEDLYRRDFTINTL 560
Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-GEKNI 182
GK+IDY GL D++ + I+ + +ED +RILR RF +
Sbjct: 561 AIEITYSNFGKLIDYFNGLVDIKEKRIRILHT--LSFVEDPIRILRALRFAGRLEFKLEK 618
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
++ L+ K L + RI E+N + + L+ + M + ++F +
Sbjct: 619 KTESLLKHAVEKDLLNFAPTGRINLELNLTFKEEKVLDILKLMDKYKVLYKLFGITLDKE 678
Query: 243 LDQLSQ------VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
++L +I E + S VL+S ++ + ++ KK+ +E +Y
Sbjct: 679 KEKLLVKLQDNFLILKEILNTDFPTSSNYLYVLLSNYPQEIVYNLLKKYHFEKEAKYIDE 738
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+++ + + ++ + + + A + D+ ++ +
Sbjct: 739 FLSAFKIVKESQNKYTLYRILKSFNKEFLPALMSFL-----------DSNKFKGIIDVLK 787
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
K PL + G+D+++ G+ P + IL +++N F+ +E + ++ K + +
Sbjct: 788 KEKNPL--IKGEDLIELGLKPSPEFKTILEDIFVKYLNDQFKNKEEAVSYIKNKYLKEVK 845
>gi|227112948|ref|ZP_03826604.1| poly(A) polymerase I [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 452
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 79/416 (18%), Positives = 140/416 (33%), Gaps = 54/416 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F R
Sbjct: 27 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRNCRL--- 83
Query: 72 PTSISYGTIKIICRKKYFDITTLRS---------------DLITDGRYAKVVFTRDWKAD 116
+ I+ + ++ T R G + + D
Sbjct: 84 -VGRRFRLAHIMFGPEVIEVATFRGHHEQHQEQQEIKNSSQQAQSGMLLRDNIFGSVEED 142
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDF+IN+LY V DY GLNDLR I+ IGD R ED +R+LR RF A
Sbjct: 143 AQRRDFSINSLYYSISDFSVRDYTDGLNDLRQGVIRMIGDPETRYREDPVRMLRAVRFAA 202
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ + + L + + R++ E KLL++ + +F+ +F
Sbjct: 203 KLNM-TVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGYGYPTYKMLCEYQLFQPLF 261
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLL-RFIVLISWQDKKSILSMAKKFSLPREIRYF 294
+ + F DS L R + + + + + +
Sbjct: 262 PLLS--------------RYFTPNGDSTLERMVAQVLKNTDQRLQNDMRVNPAFLFSAML 307
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
S F L + V+ + + +D + LS
Sbjct: 308 WYPLVEHAQKLAQESGLAYFDAFSLAMNDVLDEQCRSLAIPKRITSLVRDIWQLQTRLSR 367
Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC-KQEWINSSFQLSQEDLHHLLR 409
+ ++++ K + I + ++L L +
Sbjct: 368 RQGKRAYK-------LMEH-----PKFRAAYDLLCLRAVIEN-----HQELLRLAQ 406
>gi|148666982|gb|EDK99398.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_c [Mus
musculus]
Length = 296
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 4/252 (1%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QD+D ATT P ++ +F +
Sbjct: 46 LFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIR 105
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 106 MINNKGEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 165
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 166 LGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDRPGDHDHET 225
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + +N ++H+ +L++
Sbjct: 226 LEAIAENAKGLAGISGERIWVELKKILTGDH-VNHLIHLIYDLGVAPHIGLPANANLEEF 284
Query: 247 SQVIEAEQVFEW 258
++V + + F
Sbjct: 285 NKVSKNVEGFSP 296
>gi|261364589|ref|ZP_05977472.1| poly(A) polymerase [Neisseria mucosa ATCC 25996]
gi|288567172|gb|EFC88732.1| poly(A) polymerase [Neisseria mucosa ATCC 25996]
Length = 447
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 10/238 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ L + K+ IVGGAVRD L+ + +D D+AT P++V +IF ++R
Sbjct: 36 MISFAAEKTVKRLQEEGFKAYIVGGAVRDLLLGVEPKDFDVATDATPEQVRKIFRRSRI- 94
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + ++ + ++TT R GR K + D++RRDFT N
Sbjct: 95 ---IGRRFQIVHVMTGPETIEVTTFRGGGKVQQNAHGRIMKDNTYGSIEEDAMRRDFTCN 151
Query: 126 ALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY D + I D+ G+ND+ R++ IGDA R ED +RILR R G +++
Sbjct: 152 ALYYDPICEEILDFHNGVNDIAARSLVMIGDAAERYREDPVRILRAVRLSGKLGF-SVEE 210
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ LK R++ EI KLL + + + + + G+ +I + +
Sbjct: 211 STAAPIPEYASRLKHEPVARLFDEIMKLLFSGHARECLKKLNSLGVSDDIHPLLTALK 268
>gi|163750934|ref|ZP_02158167.1| polyA polymerase [Shewanella benthica KT99]
gi|161329358|gb|EDQ00355.1| polyA polymerase [Shewanella benthica KT99]
Length = 448
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 72/245 (29%), Positives = 112/245 (45%), Gaps = 16/245 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ I +L L+K K+ +VGG VRD L+ +D D+ T P+ + +F R
Sbjct: 2 SENAIKVLYRLHKSGFKAYLVGGGVRDILLGFQPKDFDVVTNATPEEIKGLFRNCRL--- 58
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ TLR +GR + D+ RRD
Sbjct: 59 -IGRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKTNAEGRLLRDNVYGTIDEDAERRD 117
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D + Y GGL DL++RTI+ IGD + R ED +R+LR RF G
Sbjct: 118 FTVNALYYDISDFSIHSYGGGLQDLQSRTIRMIGDPNTRYREDPVRMLRAVRFATKLGM- 176
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
I+ D + LK + + R++ EI KL N M + G+F+ +F V
Sbjct: 177 TIEKDTASPISELAPLLKDIPAARMYEEILKLFFNGQAQNNFNMMRDFGLFEPLFPLVNS 236
Query: 241 ISLDQ 245
+ +D+
Sbjct: 237 LLVDE 241
>gi|117921843|ref|YP_871035.1| poly(A) polymerase [Shewanella sp. ANA-3]
gi|117614175|gb|ABK49629.1| poly(A) polymerase [Shewanella sp. ANA-3]
Length = 435
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 16/240 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ L +D D+ T P+ + ++F R
Sbjct: 14 SENALKVLYRLNKSGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRNCRV--- 70
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R +GR + + D+ RRD
Sbjct: 71 -VGRRFRLAHIVFGRDVIEVATFRGHHGDSNEKISKANAEGRLLRDNVYGEIDEDAERRD 129
Query: 122 FTINALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D I GG DL+ T++ IGD R ED +R+LR RF
Sbjct: 130 FTVNALYYDISDYSIRSYGGGMEDLKAGTLRLIGDPETRYREDPVRMLRAVRFATKLSM- 188
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
I+ + LK + + R++ E+ KL A + M +F +F V
Sbjct: 189 AIEEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAMANFEMMQEYKLFAPLFPQVDA 248
>gi|150025694|ref|YP_001296520.1| tRNA nucleotidyltransferase [Flavobacterium psychrophilum JIP02/86]
gi|149772235|emb|CAL43711.1| tRNA nucleotidyltransferase [Flavobacterium psychrophilum JIP02/86]
Length = 473
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 78/466 (16%), Positives = 157/466 (33%), Gaps = 62/466 (13%)
Query: 10 FHDSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFS 64
+ + I ++++ + ++GG VRD ++ + DIDI + S
Sbjct: 3 YKSALNNKIFEIISEASQELSIDSYVIGGFVRDLILKREFKKDIDIVAVGSGIELALKVS 62
Query: 65 KT--RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
+ +YGT + + R + VV + D RRDF
Sbjct: 63 ALLPHKPKVQVFKTYGTAMLRFEDTEIEFVGARKESYNLESRNPVVENGTLEDDQNRRDF 122
Query: 123 TINALYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
TINAL D GL DL N+TIK D +D LR+LR RF G
Sbjct: 123 TINALAISLNKTNYGELLDPFDGLTDLENKTIKTPLDPDITYSDDPLRMLRGIRFATQLG 182
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I+ + L + K + I+S ERI E+NK+L + P + ++ G+ I ++
Sbjct: 183 F-TIEENSLNSIAKNTDRINIISGERIVDELNKILSSDKPSIGFLLLFKTGLLDIILPEL 241
Query: 239 QEIS-----------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----AK 283
++ + + + + D LR+ L+ K
Sbjct: 242 TALNQVEEIEGHTHKNNFYHTLEVVDNICPNTNDVWLRWSALLHDIGKAPTKRFNKKQGW 301
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI------------ 331
F + + + + + + + ++ I
Sbjct: 302 TFHGHEFLGGKMAKKIFERLHMPLNQKMKFVQKMVMMSSRPIVLSEDIVTDSAVRRLVFD 361
Query: 332 -------FLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVV 371
+ L ++T ++ + + ++ P+TG+ ++
Sbjct: 362 AGQDVENLMTLCEADITTKNPNKFKKYHKNFEIVRQKIIEVEERDSVRNFQPPITGEQIM 421
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ + I PG+++G + K+ + + + + L + +
Sbjct: 422 EIFDIKPGREIGVLKEAVKEAILEGEIPNEYQAAYKFV--LKKAEK 465
>gi|320160472|ref|YP_004173696.1| hypothetical protein ANT_10620 [Anaerolinea thermophila UNI-1]
gi|319994325|dbj|BAJ63096.1| hypothetical protein ANT_10620 [Anaerolinea thermophila UNI-1]
Length = 892
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 77/439 (17%), Positives = 140/439 (31%), Gaps = 32/439 (7%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
SI + + + L++ IVGG VRD L+ D DI + R
Sbjct: 454 SIPEGRLMLIKAVAAEARRLHQA---VYIVGGFVRDLLLGRPSLDFDIVVEGDAIHLARS 510
Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYF---------------------DITTLRSDLITD 101
K I +GT K D+ + R +
Sbjct: 511 LEKRYGGRILPHTRFGTAKWTISPIREKLAGMLSEKNKIDPQELPEALDLISARREFYDY 570
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHR 159
V K D RRDFTIN + G + + +
Sbjct: 571 PTALPTVERSSIKLDLHRRDFTINTMAVRLDGHHFGDLYDYWGGLRDLEQKVVRVLHSLS 630
Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219
++D R LR RF + I+ L + + ++ LS +R+ E+N +L+ +
Sbjct: 631 FVDDPTRQLRAVRFEQRFDFH-IEHRTLQLMDEGRPLIRHLSGDRLRHELNLILQEEKVF 689
Query: 220 NAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279
+ + G+ I + + + + + + + + L
Sbjct: 690 AMLARLQELGLLAAIHPAFGWDEGIR-PAMQHVLREPLPESWEFPEKVANLPIRLALAYL 748
Query: 280 SMAKKFSLPR--EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ R L + ++ + + +V+ +I L Y
Sbjct: 749 VWLLPNPEGKGIAERLRLPATLQEHWQDARTLLENHQTFQDFSASQVVKVLDEIALPALY 808
Query: 338 NNLTHQDTCFILQVLS-DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
+ + +VL I W+ TGD + GIPPG + IL + W++
Sbjct: 809 AVYLLVENKQLKEVLERYIYRWRFVYPQTTGDTLKAMGIPPGPEYREILWQLRAAWLDGR 868
Query: 397 FQLSQEDLHHLLRKLIASS 415
S E+ LL+ L++S+
Sbjct: 869 V-NSVEEEQALLQCLLSSA 886
>gi|261380692|ref|ZP_05985265.1| poly(A) polymerase [Neisseria subflava NJ9703]
gi|284796403|gb|EFC51750.1| poly(A) polymerase [Neisseria subflava NJ9703]
Length = 450
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 67/376 (17%), Positives = 136/376 (36%), Gaps = 32/376 (8%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
I L++ ++ +VGGAVRD L+ + +D DIAT P+++ +IF ++R
Sbjct: 39 AAEKIAKRLHEAGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKIFRRSRI----I 94
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 95 GRRFQIVHVMIGPETIEVTTFRGGDKVQQNAQGRIMKDNTYGSIEEDAMRRDFTCNALYY 154
Query: 130 -DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ ++ D+ G+ D+ ++ + IG+ R ED +RILR R G ++ +
Sbjct: 155 DPIKEEIWDFHQGVADVADKKLVMIGNPAERYQEDPVRILRAVRLSGKLGF-EVEEQTAL 213
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ LK R++ EI K+L + + + + GI + I + + + +
Sbjct: 214 PIAEYAGRLKNEPVARLFDEIMKILFSGHSRACLKRLNELGIPEGIHPLLDALKTAEAAD 273
Query: 249 VIEAEQVFE----------------------WKIDSLLRFIVLISWQDKKSILSMAKKFS 286
+ W + + Q L A
Sbjct: 274 KRMIMLALKNTDERLRADKSVSVGFVLAAVLWPTLNAIWQRNQSHGQKPVPALMDAMNTM 333
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346
+ + + ++ ++A+ + A + L +
Sbjct: 334 RDTVEKGWGVPQRFSATMREIWQFQPQFDNMRGARPYRLLAQARFRAAYDFLILRSEVGE 393
Query: 347 FILQVLSDIIHWKKPL 362
++ S ++
Sbjct: 394 VDKEMASWWTTFQHAD 409
>gi|198245984|ref|YP_002214141.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|197940500|gb|ACH77833.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
Length = 437
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 192
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 193 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 251
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 252 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 298
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 299 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 358
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 359 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 385
>gi|253997249|ref|YP_003049313.1| poly(A) polymerase [Methylotenera mobilis JLW8]
gi|253983928|gb|ACT48786.1| poly(A) polymerase [Methylotenera mobilis JLW8]
Length = 480
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/244 (23%), Positives = 108/244 (44%), Gaps = 15/244 (6%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + ++ + I L K ++ IVGGAVRD L+ +D D+AT P+ V R+F
Sbjct: 66 IDRRLLSNAAIKTI-EGLQKAGFEAYIVGGAVRDLLLQREPKDFDVATDATPEEVNRVFR 124
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKAD 116
++R + + ++ + +++T R GR + + D
Sbjct: 125 RSRI----IGRRFRLVHVLFGDETIEVSTFRGHHEAKGDAHTNESGRIIRDNVFGSLEED 180
Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFT NALY D +++ D+ G D++ ++ IG R ED +R+LR R A
Sbjct: 181 ATRRDFTANALYYDPTSEIVLDFHQGFADIQAGILRMIGKPETRYAEDPVRMLRVVRLSA 240
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G ID + K L+ + R++ E+ KL + + + ++ + + +
Sbjct: 241 KLG-LKIDPATMAPIAKMADLLQDVPPSRLFDEMLKLFLSGHAIESVSALREQHLHHGLL 299
Query: 236 LDVQ 239
+
Sbjct: 300 PMLD 303
>gi|161869779|ref|YP_001598947.1| poly(A) polymerase [Neisseria meningitidis 053442]
gi|161595332|gb|ABX72992.1| poly(A) polymerase [Neisseria meningitidis 053442]
Length = 453
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R + G ++ +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLGF-DLSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 267
>gi|194471610|ref|ZP_03077594.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|205358330|ref|ZP_03224002.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|194457974|gb|EDX46813.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|205335022|gb|EDZ21786.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
Length = 454
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 34 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYNLFQPLFPTI 268
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 269 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 315
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 316 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 375
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 376 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 402
>gi|268318089|ref|YP_003291808.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Rhodothermus marinus DSM 4252]
gi|262335623|gb|ACY49420.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Rhodothermus marinus DSM 4252]
Length = 561
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 86/472 (18%), Positives = 152/472 (32%), Gaps = 69/472 (14%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT--ILPDRVMRIFSKT-RY 68
L I L + E VGG VRD ++ DID T R+ R+ ++
Sbjct: 31 APLLRRIGELGQQHEIPVYAVGGVVRDLFLDRPTTDIDFVTVGPGTGIRLARLVARALGG 90
Query: 69 KVIPTSISYGTIKIICRK------KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
+ + ++GT I + R + +V D RRDF
Sbjct: 91 RTVHVYENFGTAAIRVPTPDRSGVFVLEFVAARRESYRKDSRKPIVEDGTLDDDLRRRDF 150
Query: 123 TINALYADQQGKV----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
TINA+ D ID G DLR R ++ D +D LR++R RF A
Sbjct: 151 TINAMAIDLWPSRWGTLIDPFHGRRDLRQRLLRTPLDPRQTFEDDPLRMIRAARFAAQLN 210
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ D A + ++ILS ERI E+ K+L A P + + GI IF ++
Sbjct: 211 F-RVEPDTFAAMREKAHRVEILSQERITDELQKILCAPQPSIGFKILESTGILARIFPEL 269
Query: 239 QEISLDQLSQVIEAEQVFEWKID------------------SLLRFIVLISWQDKKSILS 280
+ + + F + LR+ L+ K +
Sbjct: 270 VALKGVETIDGHRHKDNFYHTLQVVDNVARMTADRPCEDDAVWLRWAALLHDIAKPATKR 329
Query: 281 M-----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI--------- 326
+ F + ++KL L+ V +
Sbjct: 330 FVPGTGWTFHGHEDLGARMVPRIFRRFKLPMDERMAYVQKLVRLHHRPVALVDEQVTDSA 389
Query: 327 ---------AKLKIFLALHYNNLTHQDTCFILQVLSDIIHW-------------KKPLFP 364
L+ + L ++T ++ + + L + P
Sbjct: 390 IRRLLFEAGDDLEDLMLLVRADITSKNPRRVRRYLEAFDRLEARMAEVEEKDRIRNFQPP 449
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ G+++++ GI G VG I K+ + + + ++ +
Sbjct: 450 VDGEEIMRTLGIGEGVAVGIIKEAIKEAILEGRIPNEHDAAFQYMMEIKDEA 501
>gi|329121121|ref|ZP_08249752.1| poly A polymerase [Dialister micraerophilus DSM 19965]
gi|327471283|gb|EGF16737.1| poly A polymerase [Dialister micraerophilus DSM 19965]
Length = 301
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 77/284 (27%), Positives = 125/284 (44%), Gaps = 11/284 (3%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
DS+ + +L ++ K ++ VGG VRD L+N D DI T+ +PD++ I K
Sbjct: 18 DSNAVFLLEIIEKSGYEAYFVGGCVRDLLLNKKPSDWDITTSAIPDKIAEILHNFNVKTF 77
Query: 72 PT-SISYGTIKIICRKKYFDITTLRSDLITDGRY--AKVVFTRDWKADSLRRDFTINALY 128
+ YGT+ I +K ++ITT R D+ + KV FT + K D RRDFTINA+
Sbjct: 78 DNAGMKYGTVSAIINEKIYEITTFRRDIYRQNSHLPDKVFFTENLKEDLSRRDFTINAMA 137
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+D+ G + DY GG +DL+ + +K +GD+ ED LR+ R RF + +
Sbjct: 138 SDRNGNIYDYFGGQSDLQRKILKTVGDSEKSFCEDALRLFRACRFLGQLNFEPDNDLISA 197
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS------ 242
+ + INKL+ M + + +
Sbjct: 198 MPYAFYRVSGLSLERVKRE-INKLVLTDYASKGFDLMVRTKLNETRCSVKENGKSKEIDI 256
Query: 243 LDQLSQVIEAEQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKF 285
L +LS +++ Q+ E + D+ +V + I A F
Sbjct: 257 LPELSHLVDLPQMKEFHRFDAWKHSLVALDSSKPLLINRWAAFF 300
>gi|308389017|gb|ADO31337.1| putative poly(A) polymerase [Neisseria meningitidis alpha710]
gi|325129986|gb|EGC52781.1| poly(A) polymerase [Neisseria meningitidis OX99.30304]
gi|325135941|gb|EGC58551.1| poly(A) polymerase [Neisseria meningitidis M0579]
gi|325202368|gb|ADY97822.1| poly(A) polymerase [Neisseria meningitidis M01-240149]
gi|325207880|gb|ADZ03332.1| poly(A) polymerase [Neisseria meningitidis NZ-05/33]
Length = 453
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R + G ++ +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLGF-DLSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 267
>gi|325206323|gb|ADZ01776.1| poly(A) polymerase [Neisseria meningitidis M04-240196]
Length = 453
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 109/233 (46%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R G ++ +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-DLSEETTA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 267
>gi|194446356|ref|YP_002039420.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|195873676|ref|ZP_02698162.2| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|205360723|ref|ZP_02685928.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|194405019|gb|ACF65241.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|195632749|gb|EDX51203.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|205347459|gb|EDZ34090.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
Length = 437
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 192
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 193 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 251
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 252 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 298
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 299 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 358
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 359 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 385
>gi|74177543|dbj|BAB27827.3| unnamed protein product [Mus musculus]
Length = 290
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 4/252 (1%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QD+D ATT P ++ +F +
Sbjct: 40 LFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNKGEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDG 186
G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + D +
Sbjct: 160 LGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDRPGDHDHET 219
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L A + KGL +S ERIW E+ K+L + +N ++H+ +L++
Sbjct: 220 LEAIAENAKGLAGISGERIWVELKKILTGDH-VNHLIHLIYDLGVAPHIGLPANANLEEF 278
Query: 247 SQVIEAEQVFEW 258
++V + + F
Sbjct: 279 NKVSKNVEGFSP 290
>gi|16759183|ref|NP_454800.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|29140733|ref|NP_804075.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|213650761|ref|ZP_03380814.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. J185]
gi|25513273|pir||AI0525 poly(A) polymerase [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16501473|emb|CAD01345.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29136357|gb|AAO67924.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
Length = 472
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTI 286
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 287 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 333
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 334 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 393
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 394 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 420
>gi|330719089|ref|ZP_08313689.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc fallax
KCTC 3537]
Length = 342
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 88/321 (27%), Positives = 147/321 (45%), Gaps = 8/321 (2%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
IL LN+ ++ VGG+VRD+L+ + D+DIAT+ P+ V RIF+ + T
Sbjct: 3 ASPILKKLNEAHFEAYFVGGSVRDTLLGQPIHDVDIATSAFPEEVKRIFTH----TVDTG 58
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I +GT+ I+ + ++ITT R++ R V F R D RRDFTINAL ++
Sbjct: 59 IQHGTVMILDHGEGYEITTFRTESGYTDFRRPDHVRFVRSLSEDLKRRDFTINALAMTRE 118
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G+VID GLNDL I+ +GD R ED LR++R RF A G I+ A
Sbjct: 119 GEVIDLFDGLNDLNAGIIRAVGDPTERFGEDALRMMRALRFSAQLGF-TIEEQTCHALAT 177
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
L+ ++ ERI E KL+ KN +AI +F + +++ L +
Sbjct: 178 LVPNLEKIAVERIQVEFEKLMMGKNAAHAIELGITHQLFNYLPSNMRHWRLSIWQDIRHD 237
Query: 253 EQVFEW-KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ I + ++ + S ++ + ++ +++ L R I + ++ + I
Sbjct: 238 LLENQPVTIAGIWSYLAVKSGENSHEVNTLLREWKLSRTIMRTTTAIVPVVYHIQAGIIK 297
Query: 312 EIKKLFYLYGDKVMIAKLKIF 332
++ L +
Sbjct: 298 AWDLFQVADYQDTLLEVLALL 318
>gi|253689485|ref|YP_003018675.1| poly(A) polymerase [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|251756063|gb|ACT14139.1| poly(A) polymerase [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 482
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 77/397 (19%), Positives = 132/397 (33%), Gaps = 51/397 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F R
Sbjct: 57 SDNALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRNCRL--- 113
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ I+ + ++ T R G + + D
Sbjct: 114 -VGRRFRLAHIMFGPEVIEVATFRGHHDQHQEQQETKNSSQQAQSGMLLRDNIFGSVEED 172
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDF+IN+LY V DY GGLNDLR I+ IGD R ED +R+LR RF A
Sbjct: 173 AQRRDFSINSLYYSIADFSVRDYTGGLNDLRQGVIRMIGDPETRYREDPVRMLRAVRFAA 232
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ + + L + + R++ E KLL++ + + +F+ +F
Sbjct: 233 KLNM-TVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGHGYPTYKMLCEYQLFQPLF 291
Query: 236 LDVQ----EISLDQLSQVI---------EAEQVFEWKIDSLLRFIVLISWQDKKS----- 277
+ L +++ + L ++ +
Sbjct: 292 PLLSRYFTPNGDSTLERMVAQVLKNTDQRLQNNMRVNPAFLFSAMLWYPLIEHAQKLAQE 351
Query: 278 ------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
+ + I + S + +T K Y +
Sbjct: 352 SGLAYFDAFSLATNDVLDEQCRSLAIPKRITSLVRDIWQLQTRLSRRQGKRAYKLMEHPK 411
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
L L HQ+ + Q + P
Sbjct: 412 FRAAYDLLCLRAEIENHQELLRLAQWWGEFQVAAPPR 448
>gi|205357046|ref|ZP_02344374.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205324360|gb|EDZ12199.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
Length = 437
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 137/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 192
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F ++
Sbjct: 193 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPNI 251
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 252 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 298
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 299 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 358
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 359 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 385
>gi|320084436|emb|CBY94229.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 472
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSENDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYNLFQPLFPTI 286
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 287 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 333
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 334 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 393
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 394 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 420
>gi|71279421|ref|YP_270960.1| polyA polymerase [Colwellia psychrerythraea 34H]
gi|71145161|gb|AAZ25634.1| polyA polymerase [Colwellia psychrerythraea 34H]
Length = 474
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 79/371 (21%), Positives = 140/371 (37%), Gaps = 27/371 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + +L LNKG + +VGG VRD L+ +D DIAT PD + +F R
Sbjct: 46 LLSPNALKVLYRLNKGGFDAYLVGGGVRDILLGFKPKDFDIATNATPDEIKELFRNCRL- 104
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLIT----------------DGRYAKVVFTRDW 113
+ I+ ++ ++ T R DG +
Sbjct: 105 ---IGRRFRLAHIVFGREIIEVATFRGHHDNASEQEKSCKKTSKQSEDGMLLRDNIYGSI 161
Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
+ D+ RRDFTINALY + KV D+ G+ D+ ++ I+ IGD R ED +R+LR R
Sbjct: 162 EEDAERRDFTINALYYSAKDFKVYDFANGVQDVNDKVIRLIGDPETRYREDPVRMLRAIR 221
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
F + I D + + + + R++ E K+ A + + + +F
Sbjct: 222 FATKLDMQ-ISDDTKAPIKELSTLMANIPAARLFEEFLKMFIAGKAVANFEQLRSYNLFG 280
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
F V++ D+ Q +++ + I + + + L + I+
Sbjct: 281 YFFPAVEQALNDESDQQRFLLDFIMLAMENTDKRINNDQRVTPAFLFAAMLWYPLQKHIQ 340
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
++ + ++ EI + IA K F A+ + QD +
Sbjct: 341 QIKVTTQLTPQDIFFAALNEIMPE-----QQRSIAIPKRFQAVIKDIWILQDKLGRREGK 395
Query: 353 SDIIHWKKPLF 363
+ P F
Sbjct: 396 RAFKTIEHPKF 406
>gi|115311613|sp|Q8Z9C3|PCNB_SALTI RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid
copy number protein
Length = 465
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 45 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 101
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 102 -VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 160
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 161 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 220
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 221 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTI 279
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 280 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 326
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 327 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 386
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 387 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 413
>gi|300113450|ref|YP_003760025.1| poly(A) polymerase [Nitrosococcus watsonii C-113]
gi|299539387|gb|ADJ27704.1| poly(A) polymerase [Nitrosococcus watsonii C-113]
Length = 428
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/233 (25%), Positives = 99/233 (42%), Gaps = 10/233 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+N+L L K + +VGG VRD L+ +D D+ T P+++ +F R
Sbjct: 22 SEPALNVLYRLKKAGFSAYLVGGCVRDLLLGREPKDFDVTTDARPEQIRDLFRSCRL--- 78
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ + T R +GR + D+ RRDF++NAL
Sbjct: 79 -VGRRFRLAHLRFGREIIETATFRGPPEEGLSENGRIVSDNVYGTLEQDAWRRDFSVNAL 137
Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y D + V+DY GG+ DL ++ IGD R ED +R+LR RF A G
Sbjct: 138 YYDIRDFSVVDYTGGMEDLEAGRLRLIGDPVTRYREDPVRMLRAVRFAAKLGFTLHAD-S 196
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ L+ + S R++ EI KL + + +F+ +F +
Sbjct: 197 EAPIWELASSLQEIPSARLFEEILKLFLGGCAVQTFELLRRFNLFQWLFPQTE 249
>gi|238911251|ref|ZP_04655088.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
Length = 437
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 192
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 193 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTI 251
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 252 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 298
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 299 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 358
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 359 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 385
>gi|205359858|ref|ZP_02832814.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205342490|gb|EDZ29254.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
Length = 454
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 34 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSENDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYNLFQPLFPTI 268
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 269 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 315
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 316 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 375
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 376 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 402
>gi|56412460|ref|YP_149535.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197361396|ref|YP_002141031.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|56126717|gb|AAV76223.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197092871|emb|CAR58297.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
Length = 472
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 286
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 287 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 333
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 334 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 393
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 394 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 420
>gi|261820477|ref|YP_003258583.1| poly(A) polymerase I [Pectobacterium wasabiae WPP163]
gi|261604490|gb|ACX86976.1| poly(A) polymerase [Pectobacterium wasabiae WPP163]
Length = 482
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 80/397 (20%), Positives = 136/397 (34%), Gaps = 51/397 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F R
Sbjct: 57 SDNALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRNCRL--- 113
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ I+ + ++ T R G + + D
Sbjct: 114 -VGRRFRLAHIMFGPEVIEVATFRGHHDQHQEQQEVKNSSQQAQSGMLLRDNIFGSVEED 172
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDF+IN+LY V DY GLNDLR I+ IGD R ED +R+LR RF A
Sbjct: 173 AQRRDFSINSLYYSISDFSVRDYTNGLNDLRQGVIRMIGDPETRYREDPVRMLRAVRFAA 232
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ + + L + + R++ E KLL++ + +F+ +F
Sbjct: 233 KLNM-TVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGYGYPTYKMLCEYQLFQPLF 291
Query: 236 LDVQEI-------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ +L+++ + + D + L S ++ A+K +
Sbjct: 292 PLLSRHFTPNGDSTLERMVAQVLKNTDQRLQNDMRVNPAFLFSAMLWYPLIEHAQKLAQE 351
Query: 289 REIRYFLIS-----------------------FFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
+ YF + +T K Y +
Sbjct: 352 SGLAYFDAFALAMNDVLDEQCRSLAIPKRITSLVRDIWQLQTRLSRRQGKRAYKLMEHPK 411
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
L L HQ+ + Q + P
Sbjct: 412 FRAAYDLLCLRAEIENHQELLRLAQWWGEFQVATPPR 448
>gi|325198046|gb|ADY93502.1| poly(A) polymerase [Neisseria meningitidis G2136]
Length = 445
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L + ++ +VGGAVRD L+ + +D D+AT +P++V ++F ++R
Sbjct: 32 AAENVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRI----V 87
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 88 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 147
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R G + +
Sbjct: 148 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-ELSEETAA 206
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 207 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 259
>gi|296315340|ref|ZP_06865281.1| poly(A) polymerase [Neisseria polysaccharea ATCC 43768]
gi|296837718|gb|EFH21656.1| poly(A) polymerase [Neisseria polysaccharea ATCC 43768]
Length = 474
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGA+RD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAIRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----V 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGVETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGDAAERYREDPVRILRAIRLSGKLGF-ELSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + + +I + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDMPDDIHPLLNAL 267
>gi|238750543|ref|ZP_04612043.1| Poly(A) polymerase [Yersinia rohdei ATCC 43380]
gi|238711191|gb|EEQ03409.1| Poly(A) polymerase [Yersinia rohdei ATCC 43380]
Length = 473
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/414 (18%), Positives = 138/414 (33%), Gaps = 50/414 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 50 SDNALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL--- 106
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---------------KAD 116
+ ++ + ++ T R + + D
Sbjct: 107 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQPAEDSDKNSSQQAQNGMLLRDNIFGTIEDD 165
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 166 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAA 225
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
I + + L + R++ E KLL++ + + +F+ +F
Sbjct: 226 KLDM-TISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 284
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+ A E + R +V + + + +
Sbjct: 285 PLI-------------ARNFTEHHDSPMERILVQVLKNTDHRLHNDKRVNPAFLFAAMLW 331
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
S F L + V+ + + +D + LS
Sbjct: 332 YPLIEHAQKLTQESGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRR 391
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ ++++ K + S + + E L L +
Sbjct: 392 QGKRAHK-------LMEH-----PKFRAAYDLL---VLRSEVENNHE-LQRLAQ 429
>gi|305664812|ref|YP_003861099.1| putative polyA polymerase [Maribacter sp. HTCC2170]
gi|88707934|gb|EAR00173.1| putative polyA polymerase [Maribacter sp. HTCC2170]
Length = 478
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 72/446 (16%), Positives = 154/446 (34%), Gaps = 56/446 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKT-- 66
D + + +S ++GG VRD +++ + +DIDI + + +
Sbjct: 9 LQDPIFKILSDAASGLALESYVIGGFVRDYILDRGTHKDIDIVSIGSGIALAEKVASMLP 68
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
I ++GT + + R + +V K D RRDFTINA
Sbjct: 69 GNPKISIFKNFGTAMLRHHDMELEFVGARKESYQRDSRKPIVEDGTLKEDQERRDFTINA 128
Query: 127 LYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L + D G+ DL + I+ + +D LR++R RF I
Sbjct: 129 LALSLNKENFGDLLDPFEGVLDLDKKIIRTPLEPCVTYSDDPLRMMRAIRFATQLNF-EI 187
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ L A + K+ +KI+S+ER E++K++ + P ++N G+ I ++
Sbjct: 188 ELRSLQAITENKERIKIISAERTVDELHKIMACEKPSIGFSLLHNTGLLDYILPELTALE 247
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSL 287
Q + + + + + D LR+ L+ K + F
Sbjct: 248 GIEEVEGQRHKDNFWHTLEVVDNIAQTTDDLWLRWAALLHDIGKAPTKKFSKKVGWTFHG 307
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI-------------------AK 328
+ ++ + + L + ++
Sbjct: 308 HEFVGSKMVYKLFKRLRMPLNDKMKFVQKMVLMSSRPIVLAEDFATDSAVRRLVFDAGDY 367
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YG 374
++ + L ++T ++ + ++ H + P++G++++K +
Sbjct: 368 VEDLITLCEADITTKNPRKQKKYKNNFKLVRAKIVEVEERDHIRNFQPPVSGEEIIKTFN 427
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLS 400
+ P K++G I K+ +
Sbjct: 428 LKPSKEIGIIKAAIKEAILEGEIPNE 453
>gi|218667450|ref|YP_002426193.1| polyA polymerase [Acidithiobacillus ferrooxidans ATCC 23270]
gi|218519663|gb|ACK80249.1| polyA polymerase [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 477
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/241 (25%), Positives = 109/241 (45%), Gaps = 15/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +L+ L++ ++ +VGG+VRD L+ +D D+AT P++V ++F +
Sbjct: 31 SDSALQVLNGLHRAGFQAYLVGGSVRDLLLGREPKDFDVATDAHPEQVRKLFRRN---AR 87
Query: 72 PTSISYGTIKIICRKKYFDITTLRS----------DLITDGRYAKVVFTRDWKADSLRRD 121
+ + + + ++ T R + GR + D+ RRD
Sbjct: 88 LIGRRFILVHVQFGNEIIEVATFRGSANGKEDESSEHSETGRILADNVYGSLEEDARRRD 147
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT NALY + ++D+ G+ DL+ ++ IGD R ED +R+LR RF A G
Sbjct: 148 FTANALYYNIADRSILDFSTGMEDLQAGRLRVIGDPEQRYREDPVRMLRAVRFAAKLGF- 206
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D+ +K L+ + S R++ E KL N + H+ G+F +F V
Sbjct: 207 TLDAAAQAPIAACRKLLQEVPSARLFEETLKLFLTGNAQTSFEHLRQMGLFAALFPQVDA 266
Query: 241 I 241
+
Sbjct: 267 L 267
>gi|198283568|ref|YP_002219889.1| poly(A) polymerase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|198248089|gb|ACH83682.1| poly(A) polymerase [Acidithiobacillus ferrooxidans ATCC 53993]
Length = 497
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/241 (25%), Positives = 109/241 (45%), Gaps = 15/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +L+ L++ ++ +VGG+VRD L+ +D D+AT P++V ++F +
Sbjct: 51 SDSALQVLNGLHRAGFQAYLVGGSVRDLLLGREPKDFDVATDAHPEQVRKLFRRN---AR 107
Query: 72 PTSISYGTIKIICRKKYFDITTLRS----------DLITDGRYAKVVFTRDWKADSLRRD 121
+ + + + ++ T R + GR + D+ RRD
Sbjct: 108 LIGRRFILVHVQFGNEIIEVATFRGSANGKEDESSEHSETGRILADNVYGSLEEDARRRD 167
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT NALY + ++D+ G+ DL+ ++ IGD R ED +R+LR RF A G
Sbjct: 168 FTANALYYNIADRSILDFSTGMEDLQAGRLRVIGDPEQRYREDPVRMLRAVRFAAKLGF- 226
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D+ +K L+ + S R++ E KL N + H+ G+F +F V
Sbjct: 227 TLDAAAQAPIAACRKLLQEVPSARLFEETLKLFLTGNAQTSFEHLRQMGLFAALFPQVDA 286
Query: 241 I 241
+
Sbjct: 287 L 287
>gi|254804714|ref|YP_003082935.1| poly(A) polymerase [Neisseria meningitidis alpha14]
gi|254668256|emb|CBA05110.1| poly(A) polymerase [Neisseria meningitidis alpha14]
Length = 453
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 109/233 (46%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R G ++ +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-DLSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 267
>gi|311280885|ref|YP_003943116.1| poly(A) polymerase [Enterobacter cloacae SCF1]
gi|308750080|gb|ADO49832.1| poly(A) polymerase [Enterobacter cloacae SCF1]
Length = 473
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 74/393 (18%), Positives = 140/393 (35%), Gaps = 48/393 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T+ P++V ++F R
Sbjct: 53 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRNCRL--- 109
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 110 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSASDRVTSQRGQNGMLLRDNIFGSIEEDAQR 168
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A G
Sbjct: 169 RDFTINSLYYSVADFTVRDYVGGMRDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 228
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I ++ + + + R++ E KLL+A + +F+ +F +
Sbjct: 229 M-SISAETAEPIPRLATLINDVPPARLFEESLKLLQAGYGYETYRLLREYSLFQPLFPTI 287
Query: 239 Q-------------------EISLDQLSQVIEAEQVFEWKIDSLL------RFIVLISWQ 273
+ + +++ + F + + I S
Sbjct: 288 TRYFTENGDSPMERIISQVLKNTDNRIHNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 347
Query: 274 DKKSILSMAKKFSLPREIRYFLIS-----FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++A L R I + + K + +
Sbjct: 348 AYYDAFALAMNDVLDEACRTLAIPKRITTLVRDIWQLQLRMSRRQGKRAWKLMEHPKFRA 407
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
LAL + ++ + ++Q + P
Sbjct: 408 SYDLLALRAESESNSELQRLVQWWGEFQVAAPP 440
>gi|145297842|ref|YP_001140683.1| poly(A) polymerase [Aeromonas salmonicida subsp. salmonicida A449]
gi|142850614|gb|ABO88935.1| poly(A) polymerase [Aeromonas salmonicida subsp. salmonicida A449]
Length = 468
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 71/317 (22%), Positives = 123/317 (38%), Gaps = 25/317 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNKG + +VGG VRD L+ + +D DIAT P+++ +FS R
Sbjct: 29 SENALKVLYRLNKGGYDAYLVGGGVRDILLGRTPKDFDIATNATPEQIKALFSNCRL--- 85
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------------DGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R +G + + D+ R
Sbjct: 86 -IGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDAER 144
Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + + D+ GG+ DL R ++ IGD R ED +R+LR RF A
Sbjct: 145 RDFTVNALYYSARDFTLHDFEGGIEDLAQRKLELIGDPETRYREDPVRMLRAMRFAAKLD 204
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + L+ + R++ E KL A + L M G+F+ +F V
Sbjct: 205 M-TISPRSAAPIKELAPLLQDIPPARLFEETLKLFLAGDGLATYKLMREYGLFQPLFPQV 263
Query: 239 QEI-------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291
+ +Q ++ + + D + L + + + A+ +
Sbjct: 264 AALFTPHGTSPFEQFIELALIDTDTRVREDKRVTPAFLYATLLWGCVEARARVLENESGL 323
Query: 292 RYFLISFFNCNFNQKTL 308
+ N
Sbjct: 324 PWHDAFMLAINEVLDNQ 340
>gi|213052337|ref|ZP_03345215.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
gi|213425919|ref|ZP_03358669.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E02-1180]
gi|289826507|ref|ZP_06545600.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E98-3139]
Length = 437
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 192
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 193 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTI 251
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 252 TRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 298
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 299 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 358
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 359 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 385
>gi|325132016|gb|EGC54714.1| poly(A) polymerase [Neisseria meningitidis M6190]
gi|325137770|gb|EGC60345.1| poly(A) polymerase [Neisseria meningitidis ES14902]
Length = 453
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-ELSEETTA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 267
>gi|161612545|ref|YP_001586510.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|161361909|gb|ABX65677.1| hypothetical protein SPAB_00235 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|323228577|gb|EGA12706.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
Length = 472
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/399 (19%), Positives = 137/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTI 286
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I L+ I + + F
Sbjct: 287 TRYFTENGDSAME-------------RIIALVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 333
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 334 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 393
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 394 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 420
>gi|313113897|ref|ZP_07799456.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Faecalibacterium cf. prausnitzii KLE1255]
gi|310623776|gb|EFQ07172.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Faecalibacterium cf. prausnitzii KLE1255]
Length = 477
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 4/189 (2%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D +L L++ + +VGG VRDSL+ L+ D D+ T+ LP +VM +F + I
Sbjct: 6 DEGAAELLDTLHRAGYAAYVVGGCVRDSLLGLTPHDWDLCTSALPQQVMELFGAQ--RCI 63
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKV-VFTRDWKADSLRRDFTINALYA 129
PT + +GT+ + ++ITT R++ TDGR+ F D + D RRD TINA+
Sbjct: 64 PTGLQHGTVTVKQSGALYEITTFRTEGTYTDGRHPDEVHFVPDVREDLARRDLTINAMAY 123
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+++ +ID GG DL++ ++ +G R ED LRILR +RF A +G A
Sbjct: 124 NEKEGLIDPFGGQADLQSGILRAVGVPRQRFTEDALRILRLYRFAARFGFAIDPPTAQAA 183
Query: 190 SIKAKKGLK 198
Sbjct: 184 QELCAHLDC 192
Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 38/120 (31%), Gaps = 5/120 (4%)
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA-LHYNNLTHQDTCFILQVLSDII-- 356
+ T++ L G + ++ D + ++ +
Sbjct: 358 RTVLRETTVTPDFTIYARRLLGKYNLCTVQRLAALGTALQPERAADFAALSELAEQLDAD 417
Query: 357 --HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ + G D++ G+P G + +L I + ++ L +++L AS
Sbjct: 418 GVCCRVSQLAVNGCDLMAAGVPAGPGIRKVLEALLDGVIREEYPNERQALLAAVQQLAAS 477
>gi|195343785|ref|XP_002038471.1| GM10595 [Drosophila sechellia]
gi|194133492|gb|EDW55008.1| GM10595 [Drosophila sechellia]
Length = 254
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 73/170 (42%), Positives = 111/170 (65%), Gaps = 2/170 (1%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L ++L+L K + + I GGAVRD LM +S +DID+ATT PD++ ++F K +
Sbjct: 71 IFTPELNDLLALFKKYDYELRIAGGAVRDILMGISPKDIDLATTATPDQMKQMFEKEEVR 130
Query: 70 VIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+I +GTI K+ F++TTLR D+ TDGR+A+V++T DW+ D+ RRD TIN++
Sbjct: 131 MINANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVMYTTDWQLDANRRDLTINSM 190
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
+ G V D+ G +DL+ R + F+G+A RI ED+LRILR+FRF+
Sbjct: 191 FLGFDGTVYDFFYGYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGRI 240
>gi|204927237|ref|ZP_03218439.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|204323902|gb|EDZ09097.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
Length = 454
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/399 (19%), Positives = 137/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 34 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTI 268
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I L+ I + + F
Sbjct: 269 TRYFTENGDSAME-------------RIIALVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 315
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 316 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 375
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 376 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 402
>gi|37524869|ref|NP_928213.1| poly(A) polymerase I [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|36784294|emb|CAE13169.1| Poly(A) polymerase (PAP) (Plasmid copy number protein)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 521
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 73/384 (19%), Positives = 139/384 (36%), Gaps = 30/384 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DIAT P++V ++F R
Sbjct: 101 SENALKVLYRLNKSGFEAYLVGGGVRDLLLGTKPKDFDIATNATPEQVRKLFRNCRL--- 157
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW-------------KADSL 118
+ I+ ++ ++ T R G K + + D++
Sbjct: 158 -VGRRFRLAHIMFGQEVIEVATFRGPHEQTGSDDKNQSQQAQSGMLLRDNIFGSIEEDAM 216
Query: 119 RRDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTIN+LY + DY GGL+DL I+ IGD R ED +R+LR RF +
Sbjct: 217 RRDFTINSLYYGINDFSLRDYAGGLHDLETGVIRLIGDPETRYREDPVRMLRAIRFASKL 276
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL- 236
I + L + R++ E KLL+ + + +F+ +F
Sbjct: 277 NM-TISEGTAEPISRLAFLLSNIPPARLFEESLKLLQTGQGYSTYQLLREYRLFQPLFPL 335
Query: 237 ------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
+ + ++++ + + + D + L + ++ A+K S
Sbjct: 336 IQRYFTENNDSPMERIVNQVLKNTDYRLQNDKRVNPAFLFAAMLWYPLIEHAEKLSQEGG 395
Query: 291 IRYFLISFFNCN-FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
+ Y+ N + I K + +L++ +
Sbjct: 396 LAYYDAFALAMNDILDEQCHSIAIPKRLTTIMRDIWQLQLRLPRRHGKRANKLMEHPKFR 455
Query: 350 QVLSDIIHWKKPLFPLTGDDVVKY 373
+ +++ +
Sbjct: 456 AAYDLLELRANVE---NRNELKEL 476
>gi|313668687|ref|YP_004048971.1| poly(A) polymerase [Neisseria lactamica ST-640]
gi|313006149|emb|CBN87610.1| putative poly(A) polymerase [Neisseria lactamica 020-06]
Length = 453
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-ELSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 267
>gi|242240239|ref|YP_002988420.1| poly(A) polymerase I [Dickeya dadantii Ech703]
gi|242132296|gb|ACS86598.1| poly(A) polymerase [Dickeya dadantii Ech703]
Length = 449
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 133/367 (36%), Gaps = 28/367 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T P++V ++F R
Sbjct: 26 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRL--- 82
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADS 117
+ ++ + ++ T R G + + D+
Sbjct: 83 -VGRRFRLAHVMFGPEVIEVATFRGHHEQHQEQQVKNASQQDQNGMLLRDNIFGTIEEDA 141
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDF+IN+LY V DY G+NDLR I+ +GD R ED +R+LR RF A
Sbjct: 142 QRRDFSINSLYYSIADFTVRDYTNGVNDLRQGIIRLLGDPETRYREDPVRMLRAVRFAAK 201
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
G I + + L + R++ E KLL+A + +F+ +F
Sbjct: 202 LGM-KISPETAEPIPRLSSLLHDIPPARLFEEALKLLQAGYGYPTYQLLCEYQLFQPLFP 260
Query: 237 DVQ-------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289
+ E +++++ + + D + L S ++ A+K +
Sbjct: 261 LLSRDLTANGESTMERMLVQVLKNTDQRIQNDMRVNPAFLFSAMLWYPLVEHAQKLTQES 320
Query: 290 EIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
+ YF N + I K + +L++ +
Sbjct: 321 GLAYFEAFALAMNDVLDEQCRSLAIPKRITSLIRDIWQLQLRLSRRQGKRAFKLMEHPKF 380
Query: 349 LQVLSDI 355
+
Sbjct: 381 RAAYDLL 387
>gi|255022876|ref|ZP_05294862.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL J1-208]
Length = 232
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 7/221 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQ----TSYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ + +++++TT R++ R ++V F R + D RRDFT+NA+ D+
Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEH 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ D G ++N+ IK +G A R ED LR++R RF + +D + A
Sbjct: 124 FTLHDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQLDF-ELDKETEKALET 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
L+ S ERI E K+++ K AI + +
Sbjct: 183 QIALLQHTSVERITVEWXKMMKGKAAKRAIELLLKVQMETY 223
>gi|325144127|gb|EGC66434.1| poly(A) polymerase [Neisseria meningitidis M01-240013]
Length = 453
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G++D+ R + IG+A R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGMDDIAERKLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSQATAGP 215
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ + K R++ EI KLL + + + + I +I + +
Sbjct: 216 IAESICRL-KHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 267
>gi|309379411|emb|CBX21978.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 453
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGDAAERYREDPVRILRAIRLSGKLGF-ELSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 267
>gi|219685520|ref|ZP_03540337.1| polynucleotide adenylyltransferase [Borrelia garinii Far04]
gi|219672919|gb|EED29941.1| polynucleotide adenylyltransferase [Borrelia garinii Far04]
Length = 410
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 93/391 (23%), Positives = 158/391 (40%), Gaps = 18/391 (4%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
+ +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II
Sbjct: 21 NYEFYLVGGALRDLLLNKQPCDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFN 76
Query: 86 KKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGL 142
KK F+ITT R + + +T++ D RRDFTINA+ D +ID G
Sbjct: 77 KKIFEITTYRIEKEYENNRTPKQVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDCYNGK 136
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL + I+ IG+++ R+ ED LRILR RF + K + + K + L I
Sbjct: 137 KDLNKKIIRCIGNSNKRLEEDALRILRAARFSSTLNFKIEKNTLISMKYKKENILMISKE 196
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
+KLLE KN I ++ FK +L+ +++I+ + +
Sbjct: 197 RIKNE-FHKLLEGKNIQKGIYYLKKVDFFKNF------FNLEIKTKLIKKTALLNKEKFY 249
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
L +L + K + + ++ + + N+ +I ++ + YL
Sbjct: 250 LKAITILTIEKPIKELKEKLTLLKFSNKEIKLILFYRSIIDNKNIFNIKKLSDIRYLLSK 309
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPPG 378
+I + FI++ + K P + G D+
Sbjct: 310 STREHYKEIIDIYKALKGKKKKYLFIVKNIKRKKLLKNPLSLKDLKINGKDIQNLEEIEN 369
Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
K +G IL I + +++ L ++
Sbjct: 370 KNIGKILNTLLSHVIENPKLNTKQYLIERIK 400
>gi|88802647|ref|ZP_01118174.1| putative polyA polymerase [Polaribacter irgensii 23-P]
gi|88781505|gb|EAR12683.1| putative polyA polymerase [Polaribacter irgensii 23-P]
Length = 473
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 77/448 (17%), Positives = 158/448 (35%), Gaps = 56/448 (12%)
Query: 12 DSDLINILSLLNKGED-KSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKT--R 67
SD+ I+S +K +S ++GG VRD + + +DIDI + +
Sbjct: 11 SSDIFKIISEASKHLHIESYVIGGFVRDFFLKRGTAKDIDIVAIGSGIALAEKVASLLPN 70
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ +YGT + + + R + ++ VF + D RRDFTINAL
Sbjct: 71 KPKVQIFKTYGTAMLRYKDIEIEFVGARKESYSEESRNPEVFEGTLQEDQNRRDFTINAL 130
Query: 128 YADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
+ D G+ DL+N I+ + +D LR+LR RF I+
Sbjct: 131 ALSLNEENFGALLDPFHGMEDLKNACIRTPLNPAITYSDDPLRMLRAIRFATQLNF-TIE 189
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----- 238
LVA K + L+I++ ERI EINK++ + P + + + ++ ++
Sbjct: 190 EASLVAIEKNSERLEIITRERIVDEINKIMASTKPSIGFLLLEQTNLLSQLLPELIDLKG 249
Query: 239 ------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKFSLP 288
Q+ + + + + E D LR+ L+ K + F
Sbjct: 250 VEEVEGQKHKDNFYHTLEVVDNISENTEDIWLRWSALLHDIGKAPTKRFSKKVGWTFHSH 309
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------AKLK 330
+ ++ + + + L + ++ +
Sbjct: 310 EFVGSKMVYRLFKRLKMPLNNKMKFVQKMVLLSSRPIVLATDVTDAAVRRLVFDAGDDIH 369
Query: 331 IFLALHYNNLTHQDTCFILQVLSDII-------------HWKKPLFPLTGDDVVK-YGIP 376
+ L ++T ++ + + + P++G +++ + +
Sbjct: 370 SLMTLCEADITTKNPKKFKRYHQNFEVVRLKIKEVEERDRVRNFQPPVSGQEIIAAFNLK 429
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDL 404
P K++G I K+ + ++
Sbjct: 430 PCKEIGQIKEAIKEAILEGQIPNEHKEC 457
>gi|54297450|ref|YP_123819.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella
pneumophila str. Paris]
gi|53751235|emb|CAH12646.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella
pneumophila str. Paris]
Length = 423
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/290 (23%), Positives = 126/290 (43%), Gaps = 15/290 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +L+ L ++ IVGG+VRD L++ + +D DIAT P+ V +F R
Sbjct: 18 SNNALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARI--- 74
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL--------RRDFT 123
+ + I+ ++ ++ T R +D + + + RRDFT
Sbjct: 75 -IGRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFT 133
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
IN+LY + +ID+ G+ D++ + I+ IGD R ED +R+LR RF A + N+
Sbjct: 134 INSLYYNISDSSIIDFTSGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKL-QFNL 192
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ K + +SS R++ EI KL + + + G+F +F +
Sbjct: 193 SPETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLFPQTAAL- 251
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
D V + D+ +R ++ ++L R+++
Sbjct: 252 FDSHYPVNPLLGIALENTDTRIRDGKPVTPAFLIAVLLWFPMIECSRKLQ 301
>gi|54294419|ref|YP_126834.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella
pneumophila str. Lens]
gi|53754251|emb|CAH15728.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella
pneumophila str. Lens]
Length = 423
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/290 (23%), Positives = 127/290 (43%), Gaps = 15/290 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +L+ L ++ IVGG+VRD L++ + +D DIAT P+ V +F R
Sbjct: 18 SNNALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARI--- 74
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL--------RRDFT 123
+ + I+ ++ ++ T R +D + + + RRDFT
Sbjct: 75 -IGRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFT 133
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
IN+LY + +ID+ GG+ D++ + I+ IGD R ED +R+LR RF A + N+
Sbjct: 134 INSLYYNISDSSIIDFTGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKL-QFNL 192
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ K + +SS R++ EI KL + + + G+F +F +
Sbjct: 193 SPETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLFPQTAAL- 251
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
D V + D+ +R ++ ++L R+++
Sbjct: 252 FDSHYPVNPLLGIALENTDTRIRDGKPVTPAFLIAVLLWFPMIECSRKLQ 301
>gi|307610237|emb|CBW99798.1| poly(A) polymerase [Legionella pneumophila 130b]
Length = 423
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/290 (23%), Positives = 127/290 (43%), Gaps = 15/290 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +L+ L ++ IVGG+VRD L++ + +D DIAT P+ V +F R
Sbjct: 18 SNNALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARI--- 74
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL--------RRDFT 123
+ + I+ ++ ++ T R +D + + + RRDFT
Sbjct: 75 -IGRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFT 133
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
IN+LY + +ID+ GG+ D++ + I+ IGD R ED +R+LR RF A + N+
Sbjct: 134 INSLYYNISDSSIIDFTGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKL-QFNL 192
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ K + +SS R++ EI KL + + + G+F +F +
Sbjct: 193 SPETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLFPQTAAL- 251
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
D V + D+ +R ++ ++L R+++
Sbjct: 252 FDSHYPVNPLLGIALENTDTRIRDGKPVTPAFLIAVLLWFPMIECSRKLQ 301
>gi|194737669|ref|YP_002113212.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197300656|ref|ZP_02660022.2| poly(A) polymerase (PAP) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194713171|gb|ACF92392.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197292033|gb|EDY31383.1| poly(A) polymerase (PAP) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|322616013|gb|EFY12930.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322620797|gb|EFY17657.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322623852|gb|EFY20689.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322627300|gb|EFY24091.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322630607|gb|EFY27371.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322638174|gb|EFY34875.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322640660|gb|EFY37311.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322645556|gb|EFY42083.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322648150|gb|EFY44617.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322657101|gb|EFY53384.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322657472|gb|EFY53744.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322663791|gb|EFY59991.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322666624|gb|EFY62802.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322672218|gb|EFY68330.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322676471|gb|EFY72542.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322679437|gb|EFY75482.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322686235|gb|EFY82219.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323195111|gb|EFZ80294.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197562|gb|EFZ82697.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323201168|gb|EFZ86237.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323209564|gb|EFZ94497.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323212185|gb|EFZ97009.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323216489|gb|EGA01215.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323220633|gb|EGA05081.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323225882|gb|EGA10102.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323236810|gb|EGA20886.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323239690|gb|EGA23737.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323242263|gb|EGA26292.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323249925|gb|EGA33821.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323252354|gb|EGA36205.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323255638|gb|EGA39391.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323262926|gb|EGA46476.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323265411|gb|EGA48907.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323271802|gb|EGA55220.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
Length = 437
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 76/399 (19%), Positives = 137/399 (34%), Gaps = 44/399 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 192
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A N + +F+ +F +
Sbjct: 193 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTI 251
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I L+ I + + F
Sbjct: 252 TRYFTENGDSAME-------------RIIALVLKNTDNRIRNEMRVNPAFLFAAMFWYPL 298
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 299 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 358
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+ ++++ K + + + ++
Sbjct: 359 RAWK-------LMEH-----PKFRAAFDLLELRAQVENN 385
>gi|270263017|ref|ZP_06191287.1| poly(A) polymerase [Serratia odorifera 4Rx13]
gi|270042705|gb|EFA15799.1| poly(A) polymerase [Serratia odorifera 4Rx13]
Length = 492
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 72/368 (19%), Positives = 134/368 (36%), Gaps = 28/368 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F R
Sbjct: 70 SENALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRNCRL--- 126
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADS 117
+ ++ + ++ T R G + + D+
Sbjct: 127 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQTPESDKNSSQQAQNGMLLRDNIFGSIEEDA 185
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTIN+LY + DYV G+ DL+ I+ IGD R ED +R+LR RF A
Sbjct: 186 QRRDFTINSLYYGVADFTLRDYVDGMRDLQQGVIRLIGDPETRYREDPVRMLRAVRFAAK 245
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+I + + L + R++ E KLL+A + + +F+ +F
Sbjct: 246 LDM-SISDETAEPIPRLASLLHEIPPARLFEESLKLLQAGYGYPTYLKLCEYQLFQPLFP 304
Query: 237 DV-------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289
+ + ++++ + + + D + L + +L A+K +
Sbjct: 305 QIARHFTPSHDTPMERILVQVLKNTDYRLQNDMRVNPAFLFAAMLWYPLLEHAQKLAQES 364
Query: 290 EIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
+ Y+ N + I K + +L++ +
Sbjct: 365 GLAYYDAFALAMNDVLDEQCRSLAIPKRITTLVRDIWQLQLRLSRRQGKRAHKLMEHPKF 424
Query: 349 LQVLSDII 356
+
Sbjct: 425 RAAYDLLA 432
>gi|157372221|ref|YP_001480210.1| poly(A) polymerase I [Serratia proteamaculans 568]
gi|157323985|gb|ABV43082.1| poly(A) polymerase [Serratia proteamaculans 568]
Length = 505
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 72/368 (19%), Positives = 134/368 (36%), Gaps = 28/368 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T P++V ++F R
Sbjct: 83 SENALKVLYRLNKSGFEAYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRL--- 139
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADS 117
+ ++ + ++ T R G + + D+
Sbjct: 140 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQTPESDKNSSQQAQNGMLLRDNIFGSIEEDA 198
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTIN+LY + DYV GL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 199 QRRDFTINSLYYGVADFTLRDYVDGLRDLKQGVIRLIGDPETRYREDPVRMLRAVRFAAK 258
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I + + L + R++ E KLL+A + + +F+ +F
Sbjct: 259 LDM-TISDETAEPIPRLASLLHEIPPARLFEESLKLLQAGYGYPTYLKLCEYQLFQPLFP 317
Query: 237 DV-------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289
+ Q+ ++++ + + + + + L + +L A+K +
Sbjct: 318 QIARHFTPGQDTPMERILAQVLKNTDYRLQNNMRVNPAFLFAAMLWYPLLEHAQKLAQES 377
Query: 290 EIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
+ Y+ N + I K + +L++ +
Sbjct: 378 GLAYYDAFALAMNDVLDEQCRSLAIPKRITTLVRDIWQLQLRLSRRQGKRAHKLMEHPKF 437
Query: 349 LQVLSDII 356
+
Sbjct: 438 RAAYDLLA 445
>gi|271501655|ref|YP_003334681.1| poly(A) polymerase [Dickeya dadantii Ech586]
gi|270345210|gb|ACZ77975.1| poly(A) polymerase [Dickeya dadantii Ech586]
Length = 467
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 76/399 (19%), Positives = 134/399 (33%), Gaps = 50/399 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+K ++ +VGG VRD L+ +D DI T P++V ++F R
Sbjct: 45 SENALKVLYRLSKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRL--- 101
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADS 117
+ ++ + ++ T R G + + D+
Sbjct: 102 -VGRRFRLAHVMFGPEVIEVATFRGHHEQHQEQETKNAAQQGHNGMLLRDNIFGTIEEDA 160
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTIN+LY V DY GLNDLR I+ IGD R ED +R+LR RF A
Sbjct: 161 QRRDFTINSLYYSIADFTVRDYTNGLNDLRQGLIRLIGDPETRYREDPVRMLRAVRFAAK 220
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
G I ++ + L + R++ E KLL+A + + +F+ +F
Sbjct: 221 LGM-RISAETAEPIPRLASLLHDIPPARLFEESLKLLQAGHGYPTYQLLCEYQLFQPLFP 279
Query: 237 DV------------QEISLDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDKKSILSM-- 281
+ + + + L + + L ++ + L+
Sbjct: 280 LISRYFTANGESTMERMIVQVLKNTDQRIQNDMRVNPAFLFSAMLWYPLVEHAQKLTQES 339
Query: 282 ---------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ I + S + + K + +
Sbjct: 340 GLAYFEAFALAMNDVLDEQCRSLAIPKRITSLVRDIWQLQLRLSRRQGKRAFKLMEHPKF 399
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
L L HQ+ + Q + P +
Sbjct: 400 RAAYDLLCLRAEIENHQELQRLAQWWGEFQVAAPPRQQV 438
>gi|320539917|ref|ZP_08039576.1| poly(A) polymerase I [Serratia symbiotica str. Tucson]
gi|320030103|gb|EFW12123.1| poly(A) polymerase I [Serratia symbiotica str. Tucson]
Length = 435
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 76/357 (21%), Positives = 130/357 (36%), Gaps = 20/357 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK +S +VGG VRD L+ +D DI T P++V ++F R
Sbjct: 17 SENALKVLYRLNKSGYESYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV-------------VFTRDWKADSL 118
+ ++ + ++ T R Y K + D+
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEQTPEYDKNSSQQAQNGMLLRDNIFGSIEEDAQ 132
Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTIN+LY + DYV GL DL+ R I+ IGD R ED +R+LR RF A
Sbjct: 133 RRDFTINSLYYGVADFTLRDYVNGLRDLQQRVIRLIGDPETRYREDPVRMLRAVRFAAKL 192
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G I + + L + R++ E KLL A + + +F+ +F
Sbjct: 193 GM-TISDETAEPIPRLASLLHEIPPARLFEESLKLLLAGYGYPTYLKLCEYQLFQPLFPL 251
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+ + ++E V K L + + +
Sbjct: 252 IARHFTPNHATLMERTLVQALKNIDHLLQNSMGVTPAFLFAAMLWHPLLEHAQKLAQESG 311
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ ++ ++ L K + A ++ L LT + +++
Sbjct: 312 LGYYDAFALAMNDVLDEQCRSLAIPKRITALVRDIWQLQLR-LTRRQDKRAHKLMDR 367
>gi|325134021|gb|EGC56676.1| poly(A) polymerase [Neisseria meningitidis M13399]
Length = 453
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEVIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G++D+ R + IG+A R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGMDDIAERKLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSQATAGP 215
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ + K R++ EI KLL + + + + I +I + +
Sbjct: 216 IAESICRL-KHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 267
>gi|313893117|ref|ZP_07826694.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Veillonella sp. oral taxon 158 str. F0412]
gi|313442470|gb|EFR60885.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Veillonella sp. oral taxon 158 str. F0412]
Length = 472
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 91/460 (19%), Positives = 157/460 (34%), Gaps = 72/460 (15%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + +
Sbjct: 3 EQANRILTVLEEAGYEAYIIGGAVRDILMHQKPHDFDIVTSARPDTVIEVLRGQGIQTTD 62
Query: 73 -TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYA 129
S+G + K ++I T R++ + T + D LRRDFT+N +
Sbjct: 63 LVGKSFGVVVATLEGKQYEIATYRTERYGADSHRPEEITYADTLEEDVLRRDFTVNGMAM 122
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
++ G+VID VGG D++++T++ IGDA R ED LR+ R RF A D L A
Sbjct: 123 NRFGEVIDLVGGCRDIKHKTLRTIGDAQKRFEEDALRLFRACRFVAKLDFLP-SKDLLEA 181
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE------ISL 243
KA + LS ER+ +EI++L+ + + + + V+ L
Sbjct: 182 MPKAFHRVSGLSLERVRNEIDRLMLEPAVAKGLDVLVQSRLAECSCRVVENGVAREVPIL 241
Query: 244 DQLSQVIEAEQ----------------VFEWKIDSLLRFIVLISW--------------- 272
+L ++ Q V + D LR+ L+
Sbjct: 242 PELYHLVNLPQEKDFHQFDGWYHTLAVVSNTEPDLTLRWGALLHDVAKGMPTVRAVVNGR 301
Query: 273 --------QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK- 323
+ ++ + P+ + + +
Sbjct: 302 LTDRGHDTLGAEMTETLLTRLGYPKAFVQRVAWIVKNHMRFHYFVQNGDANEKKWLRKEA 361
Query: 324 -------------VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
K+ A + + + P+ D+
Sbjct: 362 RSGEFRDSQIMRTAWEQLAKVCAADVLGCGKPYASTDGTLAFGECMADLSLEMPIHTKDL 421
Query: 371 ------VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
+K GKKVG L + + N + L
Sbjct: 422 NYDERVIKL---AGKKVGEGLQYLLGQVQNGVIPNEPDAL 458
>gi|148359072|ref|YP_001250279.1| oly(A) polymerase [Legionella pneumophila str. Corby]
gi|296107120|ref|YP_003618820.1| poly(A) polymerase [Legionella pneumophila 2300/99 Alcoy]
gi|148280845|gb|ABQ54933.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella
pneumophila str. Corby]
gi|295649021|gb|ADG24868.1| poly(A) polymerase [Legionella pneumophila 2300/99 Alcoy]
Length = 423
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/290 (23%), Positives = 127/290 (43%), Gaps = 15/290 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +L+ L ++ IVGG+VRD L++ + +D DIAT P+ V +F R
Sbjct: 18 SNNALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARI--- 74
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL--------RRDFT 123
+ + I+ ++ ++ T R +D + + + RRDFT
Sbjct: 75 -IGRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFT 133
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
IN+LY + +ID+ GG+ D++ + I+ IGD R ED +R+LR RF A + N+
Sbjct: 134 INSLYYNISDSSIIDFTGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKL-QFNL 192
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ K + +SS R++ EI KL + + + G+F +F +
Sbjct: 193 SPETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLFPQTAAL- 251
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
D V + D+ +R ++ ++L R+++
Sbjct: 252 FDSHYPVNPLLGIALENTDTRIRDGKPVTPAFLIAVLLWFPMIECSRKLQ 301
>gi|203454630|ref|YP_002224946.1| gp28 [Mycobacterium phage Myrna]
gi|197311678|gb|ACH62036.1| gp28 [Mycobacterium phage Myrna]
Length = 397
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 84/416 (20%), Positives = 150/416 (36%), Gaps = 32/416 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+D + + + + K +VGG+VRD L+ + +D D T LP + I
Sbjct: 1 MNDQLMRELGERFARADRKLFLVGGSVRDLLLAKTPKDFDFTTDALPKEIQGILRDWADA 60
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
V +GTI +ITT+R D GR +VVFT D D +RRDFTINA+
Sbjct: 61 VWDVGARFGTIAAQKDGFEIEITTMRHD--GPGRKPEVVFTDDIIEDLVRRDFTINAMAM 118
Query: 130 DQQGK--------VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
+ VID G DL +K + ED LR++R RF A
Sbjct: 119 QVDAEGLHQGVSDVIDPFNGRTDLFLDLLKTPAEPWKTFTEDPLRMMRAARFAAQLDF-K 177
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ ++ + ++ +K +S+ERI +E++K++ A++ + + I + I +
Sbjct: 178 VGDTESLSILSNRELIKSVSAERIAAELDKIVAAQHSFKGWSALLHSRILEIILPEFIGA 237
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
V I+ ++ + + ++ K+ E R + +
Sbjct: 238 ---------PVAWVASTDINVRWADTLITAGVKPDQVPAIGKRLKWSNERRQSVTNLVTW 288
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ ++ + + L +T + P
Sbjct: 289 VERFALVQDWSWTEVRRVVAAAGPQLDGLLALLDDDILKGRVETLLATE--------GHP 340
Query: 362 LFPLTGDD-VVKYGIPPGKKVGNILVHCKQEWI-NSSFQLSQEDLHHLLRKLIASS 415
LTG + ++ G+ PG VG + + L L+ A
Sbjct: 341 KPLLTGKEILLALGVKPGPVVGRAQQFLWDVRLREGNISKHHAALL--LKDWAADK 394
>gi|303232267|ref|ZP_07318966.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Atopobium vaginae PB189-T1-4]
gi|302481677|gb|EFL44738.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Atopobium vaginae PB189-T1-4]
Length = 480
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 85/459 (18%), Positives = 156/459 (33%), Gaps = 63/459 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+++ L + + GG VRD L+N DID+AT ++ V T
Sbjct: 22 AQRVIAALEHAGYECWVAGGFVRDCLLNRPFCDIDLATNAHWQTTKKLLEAAHIHVFETG 81
Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKV-VFTRDWKADSLRRDFTINALYADQQ 132
+ +GT+ + +ITT R ++ +D R+ VF +D RRDFTINAL +Q
Sbjct: 82 VKHGTLTAVVDGAAVEITTFRQEVGYSDHRHPDTVVFVTSITSDCARRDFTINALAWRKQ 141
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-----------EKN 181
++D GG+ DL R ++ +GD H R ED LR++R RF A Y +
Sbjct: 142 DGLVDCFGGVRDLNARLVRCVGDPHTRFSEDPLRLVRALRFSATYAFRIEEATFAALCSD 201
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
I VA + + +K L + ++ + + + V+ I
Sbjct: 202 IHDIAYVAPQRIAQEVKKLVACDRFAYALLCYPSCFAVCLSALFRDVQAAPLTSSQVEYI 261
Query: 242 S--LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF----- 294
+ + E + + R + ++ S M + S P+
Sbjct: 262 AACCSLYVVLSETKGNLSCYVAIWQRALARMNLVHSHSFSRMCAQLSYPKNTMRRASLCV 321
Query: 295 ----------------------------LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ F+ + +S + Y +
Sbjct: 322 AVVDALEALCGQLAASSCVSHSDVAARVQLCLFDMSPRITHMSRAYLLSCAYDAVHLLEA 381
Query: 327 AKLKIFLALHYNN----------LTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVK 372
L ++ L H I L +I + P ++ D++
Sbjct: 382 EHAAARLTGRSSDMCALQPSSLQLPHAVFEKIRCALREICTTRVPLCFSDLAISTRDLMC 441
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
GI G ++ ++ + + + + L R+L
Sbjct: 442 VGIV-GARIRDVQRMLFCDVCKGTIPNTHDALCTRAREL 479
>gi|238791217|ref|ZP_04634856.1| Poly(A) polymerase [Yersinia intermedia ATCC 29909]
gi|238729350|gb|EEQ20865.1| Poly(A) polymerase [Yersinia intermedia ATCC 29909]
Length = 474
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/369 (18%), Positives = 133/369 (36%), Gaps = 29/369 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 50 SDNALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL--- 106
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---------------KAD 116
+ ++ + ++ T R + + D
Sbjct: 107 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQPAEDSDKNSSQQAQNGMLLRDNIFGTIEDD 165
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 166 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAA 225
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
I + + L + R++ E KLL++ + + +F+ +F
Sbjct: 226 KLDM-TISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 284
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
++ + ++++ + D + L + ++ A+K +
Sbjct: 285 PLIARNFTELHDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 344
Query: 289 REIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + + K + + +L++ +
Sbjct: 345 SGLAYYDAFALAMNDVLDEECRSLAVPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPK 404
Query: 348 ILQVLSDII 356
+
Sbjct: 405 FRAAYDLLA 413
>gi|300742670|ref|ZP_07072691.1| tRNA adenylyltransferase [Rothia dentocariosa M567]
gi|300381855|gb|EFJ78417.1| tRNA adenylyltransferase [Rothia dentocariosa M567]
Length = 474
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 91/441 (20%), Positives = 150/441 (34%), Gaps = 64/441 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKV 70
D + + L + +VGG VRD L N D D+ T P + RI S +
Sbjct: 12 PDAVELGELYRQAGFDLYLVGGLVRDELRNTPGEFTDFDMTTNATPAQSERILSAWGEHI 71
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
YGTI +++TT R++ + D R V F D KAD +RRDFTINA+ A
Sbjct: 72 WDIGKEYGTISARKNGAVYEVTTYRAEVYVADSRKPTVEFGTDLKADLIRRDFTINAMAA 131
Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
G+++D G DL ++ ED LR++R RF A + + +
Sbjct: 132 ALPSGEIVDLFHGTKDLAEGVLRTPRSPQESFSEDPLRMMRAARFAARFN-LTVAPEVFE 190
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH----------------MYNGGIFK 232
A + ++I+S+ER+ E+ KL+ A P + +
Sbjct: 191 AMRQMAPRIEIISAERVRDELIKLICADYPRVGLNLLVETGLADYVLPELPALRMEMDPS 250
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKK------------- 276
DV E SL + Q IE E + D +LRF L+ K
Sbjct: 251 HHHKDVYEHSLKVMEQAIEKETDADGPCPTPDFVLRFASLLHDIGKPKTRRFEKDGSVSF 310
Query: 277 ---------SILSMAKKFSLPREIRYFLISFFNCNF-----NQKTLSIPEIKKLFYLYGD 322
+ + + + + + + +++ G+
Sbjct: 311 LQHDVVGARMVKKRMRALRFDNDTIKAVARLVELHMRFYGYREAGWTDSAVRRYVRDAGE 370
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK 372
+ + +L + + Q D+ L G+ ++
Sbjct: 371 Q--LQRLHRLSRSDVTTRNKRMARSLAQAYDDLERRIDELAAQEELDAMRPELDGEQIMA 428
Query: 373 -YGIPPGKKVGNILVHCKQEW 392
GI PG VG
Sbjct: 429 VLGIDPGPLVGQAYKFLLNLR 449
>gi|157377033|ref|YP_001475633.1| polynucleotide adenylyltransferase [Shewanella sediminis HAW-EB3]
gi|157319407|gb|ABV38505.1| Polynucleotide adenylyltransferase [Shewanella sediminis HAW-EB3]
Length = 496
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 70/236 (29%), Positives = 105/236 (44%), Gaps = 16/236 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + ++F R
Sbjct: 76 SENAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKKLFRNCRL--- 132
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ TLR + GR + D+ RRD
Sbjct: 133 -VGRRFRLAHIVFGRDVIEVATLRGHHVEHVEQVSKTNAEGRLLRDNVYGTIDEDAERRD 191
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D + Y GGL DL++RTI+ IGD + R ED +R+LR RF
Sbjct: 192 FTVNALYYDISDFSIHSYGGGLEDLKSRTIRLIGDPNTRYREDPVRMLRAVRFATKLDM- 250
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
ID + LK + + R++ EI KL N M G+F +F
Sbjct: 251 TIDKGAADPIYELAPLLKDIPAARMYEEILKLFFNGQAANNFTMMREFGLFAPLFP 306
>gi|319638160|ref|ZP_07992923.1| PolyA polymerase [Neisseria mucosa C102]
gi|317400433|gb|EFV81091.1| PolyA polymerase [Neisseria mucosa C102]
Length = 450
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/376 (18%), Positives = 136/376 (36%), Gaps = 32/376 (8%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
I L++ ++ +VGGAVRD L+ + +D DIAT P+++ +IF ++R
Sbjct: 39 AAEKIAKRLHEAGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKIFRRSRI----I 94
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 95 GHRFQIVHVMIGPETIEVTTFRGGDKVQQNAQGRIMKDNTYGSIEEDAMRRDFTCNALYY 154
Query: 130 -DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ ++ D+ G+ D+ ++ + IG+ R ED +RILR R G ++ +
Sbjct: 155 DPIKEEIWDFHQGVADVADKKLVMIGNPAERYQEDPVRILRAVRLSGKLGF-EVEEQTAL 213
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ LK R++ EI K+L + + + + GI + I + + + +
Sbjct: 214 PIAEYAGRLKNEPVARLFDEIMKILFSGHSRACLKRLNELGIPEGIHPLLDALKTAEAAD 273
Query: 249 VIEAEQVFE----------------------WKIDSLLRFIVLISWQDKKSILSMAKKFS 286
+ W + + Q L A
Sbjct: 274 KRMIMLALKNTDERLRADKSVSVGFVLAAVLWPTLNAIWQRNQSHGQKPVPALMDAMNTM 333
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346
+ + + ++ ++A+ + A + L +
Sbjct: 334 RDTVEKGWGVPQRFSATMREIWQFQPQFDNMRGARPYRLLAQARFRAAYDFLILRSEVGE 393
Query: 347 FILQVLSDIIHWKKPL 362
+V S ++
Sbjct: 394 VDKEVASWWTTFQHAD 409
>gi|51892943|ref|YP_075634.1| putative poly A polymerase [Symbiobacterium thermophilum IAM 14863]
gi|51856632|dbj|BAD40790.1| putative poly A polymerase [Symbiobacterium thermophilum IAM 14863]
Length = 890
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 83/416 (19%), Positives = 130/416 (31%), Gaps = 22/416 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L + + VGG VRD L+ D DI ++ +
Sbjct: 482 LRTAGRVAEQEGVAVYAVGGFVRDLLLGRPNLDFDIVVEGDGIAFAHSLARALGGRVQEV 541
Query: 75 ISYGTIKIICR------KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+GT I D+ T R + V D D RRDF+INAL
Sbjct: 542 PRFGTAHIYLDADDPDLPSRIDVATARREFYEHAAALPRVEHADLHEDLYRRDFSINALA 601
Query: 129 AD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ID+ GGL DL ++ + +ED R+LR RF YG +
Sbjct: 602 IRLGSAGPSGLIDFFGGLKDLAAGQVRILHT--LSFVEDPTRLLRAVRFAHRYGFRLERE 659
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
A +G S LL + + M E L ++ +
Sbjct: 660 TEACARRAIAEGFLGRVSRERLRNELLLLLQEPAGGGALQMLADLGGLEDLLPGVGLTPE 719
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
LS + A+ + E + + I S +L + L + +
Sbjct: 720 VLSLLDAADGLPEAEPE-----ISAGSRLWLVKLLVLLHPLPLNQGAALVKRLRLKRAES 774
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH----YNNLTHQDTCFILQVLSDIIHWKK 360
Q L + ++ + I L L +V + W+
Sbjct: 775 QACLQVLAGWRIAHDLVTAPRPDPAAIVAHLDGWPPEGLLLLHLLGGGDRVATYWRTWRH 834
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+TG DV G+PPG +VG IL ++ L L R+ A +
Sbjct: 835 IRLDITGADVRALGVPPGPQVGRILQRVLAARLSGEAPDRAAQL-ELARRHAAQQE 889
>gi|293418032|ref|ZP_06660654.1| poly(A) polymerase [Escherichia coli B185]
gi|291430750|gb|EFF03748.1| poly(A) polymerase [Escherichia coli B185]
Length = 472
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 228 MH-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 406
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 407 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 440
>gi|323705329|ref|ZP_08116904.1| Polynucleotide adenylyltransferase region [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535231|gb|EGB25007.1| Polynucleotide adenylyltransferase region [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 383
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 79/387 (20%), Positives = 130/387 (33%), Gaps = 19/387 (4%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82
K + IVGG VRD L+NL DIDI + + ++ I + T KI
Sbjct: 3 EKIGVNAYIVGGYVRDKLLNLESDDIDITVEGDGIKFAFMLNEILNGDIEVHDKFETAKI 62
Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
R DI + R + VV D RRDFTIN L D + I +
Sbjct: 63 KTRDFELDIVSARKEHYERPGMLPVVQRASLADDIKRRDFTINMLALDVKTNQIIDIYNG 122
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILS 201
D + + ++D RI R R+ G K + G +S
Sbjct: 123 ADDIKNKLIRV-VHDKSFVDDPTRIFRAIRYSGRLGFKIEQHTEWLLRKSISDGDIFNVS 181
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
++RI +EI +L+ KNP + M + KE+F ++ I+ L+ +E ++
Sbjct: 182 ADRIMNEIYLILKEKNPEPIVKLMKYYQLDKELFCGIK-INTTNLNTSLEKGNTLLYRFL 240
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L R +L + + +S +
Sbjct: 241 LLFYNATN---------EDADCLIRKYNLKREYLSGLSDILNIKMNMSNLNENVSIFNTL 291
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381
I + A+ N+ K + GDD+ + G+ P
Sbjct: 292 KDKRIEAISAVHAMEDLNIKQAIE-------KYYDLAKLKRLEINGDDIKRLGLQPSPIY 344
Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLL 408
IL + I + ++++ LL
Sbjct: 345 KEILDKILMDKILGKIKDREDEIKTLL 371
>gi|52841768|ref|YP_095567.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|52628879|gb|AAU27620.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
Length = 436
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 68/290 (23%), Positives = 127/290 (43%), Gaps = 15/290 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + +L+ L ++ IVGG+VRD L++ + +D DIAT P+ V +F R
Sbjct: 31 SNNALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARI--- 87
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL--------RRDFT 123
+ + I+ ++ ++ T R +D + + + RRDFT
Sbjct: 88 -IGRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFT 146
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
IN+LY + +ID+ GG+ D++ + I+ IGD R ED +R+LR RF A + N+
Sbjct: 147 INSLYYNISDSSIIDFTGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKL-QFNL 205
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ K + +SS R++ EI KL + + + G+F +F +
Sbjct: 206 SPETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLFPQTAAL- 264
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
D V + D+ +R ++ ++L R+++
Sbjct: 265 FDSHYPVNPLLGIALENTDTRIRDGKPVTPAFLIAVLLWFPMIECSRKLQ 314
>gi|161485780|ref|NP_706091.3| poly(A) polymerase I [Shigella flexneri 2a str. 301]
gi|161486546|ref|NP_835874.2| poly(A) polymerase I [Shigella flexneri 2a str. 2457T]
gi|281599499|gb|ADA72483.1| poly(A) polymerase I [Shigella flexneri 2002017]
Length = 472
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 406
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 407 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 440
>gi|146310347|ref|YP_001175421.1| poly(A) polymerase I [Enterobacter sp. 638]
gi|145317223|gb|ABP59370.1| poly(A) polymerase [Enterobacter sp. 638]
Length = 437
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 74/395 (18%), Positives = 138/395 (34%), Gaps = 49/395 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T+ P++V ++F R
Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTSATPEQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI-------------TDGRYAKVVFTRDWKADSL 118
+ ++ + ++ T R +G + + D+
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEAGAPADRTTSQRGQNGMLLRDNIFGSIEEDAQ 132
Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTIN+LY V D+VGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 133 RRDFTINSLYYSVADFSVRDFVGGVQDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 192
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL- 236
+ I ++ + + + R++ E+ KLL+A + +F+ +F
Sbjct: 193 NMQ-ISAETAEPIPRLATLINDVPPARLFEEVLKLLQAGYGYETYKLLRENSLFQPLFPS 251
Query: 237 ------------------DVQEISLDQLSQVIEAEQVFEWKIDSLL------RFIVLISW 272
V + + +L + F + + I S
Sbjct: 252 IVRYFTESGDSPMERMIAQVLKNTDTRLHNDMRVNPAFLFAAMFWYPLLETAQKIAQESG 311
Query: 273 QDKKSILSMAKKFSLPREIRYFLIS-----FFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
++A L R I + + K + +
Sbjct: 312 LAYYDAFALAANDVLDEACRTLAIPKRITTLVRDIWQLQLRMSRRQGKRAWKLMEHPKFR 371
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL +++ ++Q + P
Sbjct: 372 AAYDLLALRAEIENNKELQSLVQWWGEFQVSAPPE 406
>gi|312944753|gb|ADR25580.1| poly(A) polymerase I [Escherichia coli O83:H1 str. NRG 857C]
Length = 472
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 406
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 407 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 440
>gi|325142111|gb|EGC64537.1| poly(A) polymerase [Neisseria meningitidis 961-5945]
Length = 453
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L + ++ +VGGAVRD L+ + +D D+AT +P++V ++F ++R
Sbjct: 40 AAENVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRI----V 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-ELSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 267
>gi|294508469|ref|YP_003572527.1| tRNA nucleotidyltransferase [Salinibacter ruber M8]
gi|294344797|emb|CBH25575.1| tRNA nucleotidyltransferase [Salinibacter ruber M8]
Length = 562
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 78/475 (16%), Positives = 144/475 (30%), Gaps = 78/475 (16%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI--LPDRVMRIFSKT-RYKVI 71
L I + + ++ VGG VRD L+ S D+D T + + +
Sbjct: 26 LRTIGRVAERKGIEAYAVGGMVRDVLLGRSTTDLDFVTVGPETGIALAEAVGEALGGRTA 85
Query: 72 PTSISYGTIKIIC------------RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+GT + + R + V + D R
Sbjct: 86 HVYPKFGTAALRIPAADALPDDHPDDALVLEFVAARKESYRSDSRKPEVEAGTLEDDQYR 145
Query: 120 RDFTINALYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
RDFT+NA+ D G DL +TI D +D LR++R RF
Sbjct: 146 RDFTVNAMAIHLTPDRFGVLLDPFDGRRDLERQTIDTPLDPADTFEDDPLRMIRAARFAT 205
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
E + A ++ILS ERI E++K+LEA P + G+ +
Sbjct: 206 QL-EFRVSDRVFDAMGAQAHRVEILSQERITEELHKMLEADTPSIGFKILEASGVLAHVM 264
Query: 236 LDVQEIS-----------------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI 278
++Q + L+ L V E LR+ L+ K
Sbjct: 265 PEIQRLKGVDVVNGRDHKDNFYHTLEVLDNVAERTSDRPGAETRWLRWAALLHDIAKPKT 324
Query: 279 LSMAKKFSL-------------PREIRYF---------------LISFFNCNFNQKTLSI 310
+ P R + + + ++
Sbjct: 325 KRFDPEDGWTFHGHEDVGARMVPELFRKWRLPTDERLDYVQTLVRLHLRPIALADEKVTD 384
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT--------CFILQVLSDIIHWKKPL 362
+++L Y GD + + + NN + ++ + + +
Sbjct: 385 SAVRRLLYEAGDDIDDLMTLVRSDVTSNNPDRRRRYQRAFDRVEEKMRAVEEKDRLRNFE 444
Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED----LHHLLRKLI 412
P+ G ++++ GI G VG ++ ++ + L + + +
Sbjct: 445 PPVDGYEIMETLGIEEGVAVGIAKTWIREAILDGEIPNEHDAAYDHLMAIKDEAL 499
>gi|26246087|ref|NP_752126.1| poly(A) polymerase I [Escherichia coli CFT073]
gi|82542743|ref|YP_406690.1| poly(A) polymerase I [Shigella boydii Sb227]
gi|110640364|ref|YP_668092.1| poly(A) polymerase I [Escherichia coli 536]
gi|161986592|ref|YP_309183.2| poly(A) polymerase I [Shigella sonnei Ss046]
gi|162139816|ref|NP_308174.2| poly(A) polymerase I [Escherichia coli O157:H7 str. Sakai]
gi|209917334|ref|YP_002291418.1| poly(A) polymerase I [Escherichia coli SE11]
gi|218557086|ref|YP_002389999.1| poly(A) polymerase I [Escherichia coli S88]
gi|218688020|ref|YP_002396232.1| poly(A) polymerase I [Escherichia coli ED1a]
gi|218698564|ref|YP_002406193.1| poly(A) polymerase I [Escherichia coli IAI39]
gi|237704302|ref|ZP_04534783.1| poly(A) polymerase I [Escherichia sp. 3_2_53FAA]
gi|254037561|ref|ZP_04871638.1| poly(A) polymerase I [Escherichia sp. 1_1_43]
gi|291280967|ref|YP_003497785.1| Poly(A) polymerase [Escherichia coli O55:H7 str. CB9615]
gi|306815256|ref|ZP_07449405.1| poly(A) polymerase I [Escherichia coli NC101]
gi|26106484|gb|AAN78670.1|AE016755_170 Poly(A) polymerase [Escherichia coli CFT073]
gi|81244154|gb|ABB64862.1| poly(A) polymerase I [Shigella boydii Sb227]
gi|110341956|gb|ABG68193.1| poly(A) polymerase [Escherichia coli 536]
gi|209910593|dbj|BAG75667.1| poly(A) polymerase [Escherichia coli SE11]
gi|218363855|emb|CAR01518.1| poly(A) polymerase I [Escherichia coli S88]
gi|218368550|emb|CAR16287.1| poly(A) polymerase I [Escherichia coli IAI39]
gi|218425584|emb|CAR06370.1| poly(A) polymerase I [Escherichia coli ED1a]
gi|226840667|gb|EEH72669.1| poly(A) polymerase I [Escherichia sp. 1_1_43]
gi|226902214|gb|EEH88473.1| poly(A) polymerase I [Escherichia sp. 3_2_53FAA]
gi|290760840|gb|ADD54801.1| Poly(A) polymerase [Escherichia coli O55:H7 str. CB9615]
gi|305850918|gb|EFM51373.1| poly(A) polymerase I [Escherichia coli NC101]
gi|307551996|gb|ADN44771.1| poly(A) polymerase [Escherichia coli ABU 83972]
gi|309700352|emb|CBI99640.1| poly(A) polymerase [Escherichia coli ETEC H10407]
Length = 472
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 406
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 407 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 440
>gi|146302633|ref|YP_001197224.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Flavobacterium johnsoniae UW101]
gi|146157051|gb|ABQ07905.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Flavobacterium johnsoniae UW101]
Length = 495
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 80/457 (17%), Positives = 158/457 (34%), Gaps = 61/457 (13%)
Query: 17 NILSLLNKGEDKS----CIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKT--RYK 69
I +++K + ++GG VRD L+N +DID+ + S
Sbjct: 32 KIFDVISKASQELKVDSYVIGGFVRDLLLNRGSKKDIDVVAVGSGIELALKVSDLLPNKP 91
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ +YGT + + R + T +V + D RRDFTINAL
Sbjct: 92 KVQVFKTYGTAMLRFEDTDIEFVGARKESYTRDSRNPIVENGTLQDDQNRRDFTINALAL 151
Query: 130 DQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
D GL DL N+TIK D +D LR+LR RF I+ +
Sbjct: 152 SLNSTNFGDLLDPFDGLTDLENKTIKTPLDPDITYSDDPLRMLRAIRFATQLNF-EIEEN 210
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--- 242
L A K +KI+S ERI E+NK+L P + + +Y G+ I ++ ++
Sbjct: 211 SLNAITKNADRIKIISGERIVDELNKILSTPKPSSGFLLLYKTGLLDLILPELTALNQVE 270
Query: 243 --------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM-----AKKFSLPR 289
+ + + + D LR+ L+ K
Sbjct: 271 EIEGHTHKNNFYHTLEVVDNICPNTDDVWLRWSALLHDIGKAPTKRFTKKQGWTFHGHEF 330
Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI------------------ 331
F + ++K+ + +++A+ +
Sbjct: 331 LGGKMAKKIFERLHMPLNHKMKFVQKMVIMSSRPIVLAQDIVTDSAVRRLVFDAGEDVEN 390
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGIPP 377
+ L ++T ++ + + +K P++G+++++ + + P
Sbjct: 391 LMTLCEADITTKNPSKFKKYHKNFEIVRKKIVEVEERDHVRNFQPPISGEEIMEIFDLKP 450
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDL-HHLLRKLIA 413
+++G + K+ + + ++++
Sbjct: 451 SREIGILKEAVKEAILEGDIPNEYQAAYDFVIKRAAK 487
>gi|161950166|ref|YP_401882.2| poly(A) polymerase I [Shigella dysenteriae Sd197]
Length = 472
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 287 TRYFTENGDSPMERIIKQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 406
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 407 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 440
>gi|331645278|ref|ZP_08346389.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli M605]
gi|30039945|gb|AAP15679.1| poly(A) polymerase I [Shigella flexneri 2a str. 2457T]
gi|56383162|gb|AAN41798.2| poly(A) polymerase I [Shigella flexneri 2a str. 301]
gi|281177366|dbj|BAI53696.1| poly(A) polymerase [Escherichia coli SE15]
gi|330909990|gb|EGH38500.1| polyA polymerase [Escherichia coli AA86]
gi|331046035|gb|EGI18154.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli M605]
gi|332762142|gb|EGJ92411.1| poly(A) polymerase family protein [Shigella flexneri 4343-70]
gi|332762374|gb|EGJ92641.1| poly(A) polymerase family protein [Shigella flexneri 2747-71]
gi|332764987|gb|EGJ95215.1| poly(A) polymerase family protein [Shigella flexneri K-671]
gi|332768930|gb|EGJ99109.1| poly(A) polymerase I [Shigella flexneri 2930-71]
gi|333009186|gb|EGK28642.1| poly(A) polymerase family protein [Shigella flexneri K-218]
gi|333010635|gb|EGK30068.1| poly(A) polymerase family protein [Shigella flexneri VA-6]
gi|333022260|gb|EGK41498.1| poly(A) polymerase family protein [Shigella flexneri K-304]
Length = 454
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|91209212|ref|YP_539198.1| poly(A) polymerase I [Escherichia coli UTI89]
gi|91070786|gb|ABE05667.1| poly(A) polymerase [Escherichia coli UTI89]
Length = 472
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQAKRAWKLLEHPKFRA 406
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 407 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 440
>gi|307132158|ref|YP_003884174.1| poly(A) polymerase I [Dickeya dadantii 3937]
gi|306529687|gb|ADM99617.1| poly(A) polymerase I [Dickeya dadantii 3937]
Length = 467
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 62/244 (25%), Positives = 101/244 (41%), Gaps = 20/244 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+K ++ +VGG VRD L+ +D DI T P++V ++F R
Sbjct: 45 SENALKVLYRLSKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRL--- 101
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADS 117
+ ++ + ++ T R G + + D+
Sbjct: 102 -VGRRFRLAHVMFGPEVIEVATFRGHHEQHQEQETKNAAQQGHNGMLLRDNIFGTIEEDA 160
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDF+IN+LY V DY GLNDLR I+ IG+ R ED +R+LR RF A
Sbjct: 161 QRRDFSINSLYYSIADFTVRDYTNGLNDLRQGLIRLIGEPETRYREDPVRMLRAVRFAAK 220
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
G I + + L + R++ E KLL+A + +F+ +F
Sbjct: 221 LGM-RISPETAEPIPRLASLLHDIPPARLFEESLKLLQAGYGYPTYQLLCEYQLFQPLFP 279
Query: 237 DVQE 240
+
Sbjct: 280 LISR 283
>gi|227327661|ref|ZP_03831685.1| poly(A) polymerase I [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 452
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 80/397 (20%), Positives = 137/397 (34%), Gaps = 51/397 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F R
Sbjct: 27 SDNALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRNCRL--- 83
Query: 72 PTSISYGTIKIICRKKYFDITTLRS---------------DLITDGRYAKVVFTRDWKAD 116
+ I+ + ++ T R G + + D
Sbjct: 84 -VGRRFRLAHIMFGPEVIEVATFRGHHEQHQEQQEVKNSSQQAQSGMLLRDNIFGSVEED 142
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDF+IN+LY V DY GLNDLR I+ IGD R ED +R+LR RF A
Sbjct: 143 AQRRDFSINSLYYSISDFSVRDYTDGLNDLRQGIIRMIGDPETRYREDPVRMLRAVRFAA 202
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ + + L + + R++ E KLL++ + +F+ +F
Sbjct: 203 KLNM-TVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGYGYPTYKMLCEYQLFQPLF 261
Query: 236 LDVQ-------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + +L+++ + + D + L S ++ A+K +
Sbjct: 262 PLLSRYFTPNGDSTLERMVAQVLKNTDQRLQNDMRVNPAFLFSAMLWYPLVEHAQKLAQE 321
Query: 289 REIRYFLIS-----------------------FFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
+ YF + +T K Y +
Sbjct: 322 SGLAYFDAFSLAMNDVLDEQCRSLAIPKRITSLVRDIWQLQTRLSRRQGKRAYKLMEHPK 381
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
L L HQ+ + Q + P
Sbjct: 382 FRAAYDLLCLRAEIENHQELLRLAQWWGEFQVAAPPR 418
>gi|149376132|ref|ZP_01893897.1| poly(A) polymerase [Marinobacter algicola DG893]
gi|149359537|gb|EDM47996.1| poly(A) polymerase [Marinobacter algicola DG893]
Length = 439
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 20/243 (8%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
F +LS LN ++ +VGG VRD L+ +D DIAT P+ V +F +R
Sbjct: 28 FISEPAKKVLSRLNNAGYEAYLVGGGVRDILLGGKPKDFDIATNATPEEVHDLFRNSRL- 86
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLI--------------TDGRYAKVVFTRDWKA 115
+ + ++ ++ ++TT R + G + + +
Sbjct: 87 ---IGRRFRIVHVLFGREVIEVTTFRGNAAEAEADDDDDDRRTSEHGLLLRDNVYGNLEE 143
Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
D+LRRDFT+NALY + V+D+ G+ DL NR ++ IGD R ED +R+LR RF
Sbjct: 144 DALRRDFTVNALYYCIRDFTVVDFANGIEDLENRQMRLIGDPETRYREDPVRMLRAVRFA 203
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
A G +I+ D + L + R++ E+ KL A + + +
Sbjct: 204 AKLGF-DIEPDTEAPIRELAPLLTHIPPARLFEEVLKLFSAGYGEATYDLLSEYNLLAPL 262
Query: 235 FLD 237
F +
Sbjct: 263 FPE 265
>gi|222031976|emb|CAP74714.1| Poly(A) polymerase [Escherichia coli LF82]
Length = 454
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|89895037|ref|YP_518524.1| hypothetical protein DSY2291 [Desulfitobacterium hafniense Y51]
gi|89334485|dbj|BAE84080.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 873
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 81/406 (19%), Positives = 147/406 (36%), Gaps = 24/406 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV-IP 72
+ L +VGG VRD L+ + QD+D R ++ V +
Sbjct: 462 AAQQVADEL---GYSVFVVGGFVRDILLKVPTQDLDFVIEGDGHAFARALAQRLQDVQVV 518
Query: 73 TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+GT ++ + D+ + R + + V + D RRDFTINA+
Sbjct: 519 FHDQFGTARLDFADGSHLDVASSRREDYSSPGALPQVEESRLRDDMFRRDFTINAMAIAV 578
Query: 132 QG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+++DY GGL DL+ I+F+ + +ED RILR RF YG +
Sbjct: 579 NSVRYGELVDYYGGLRDLKQGEIRFLH--NLSFIEDPTRILRALRFAGRYGFRLAKETRE 636
Query: 188 VASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
G+ + LS ER E +L + + G+F + F
Sbjct: 637 GLYTALDAGVLQKLSIERFTEEFMHMLSELKFGVMGESLLDMGVFPKWFGAELPWDF--- 693
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
I ++++ + D+ + +K L RE++ FF+
Sbjct: 694 -----THPGLNQAISPERKWLICLRRMDRSQFERIEEKLRLARELKGIAYKFFDIMDGLL 748
Query: 307 TLSIPEIKKLFYLYGDKVM----IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+L + E Y + + + + L + D F + + K
Sbjct: 749 SLGVGEKGSEASPYAREKISLKSLDQYLEGLPALLMEVLLWDERFRDSLEAYTEAVKAIH 808
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G + ++G+ G ++G IL + W+ Q +E+ +L
Sbjct: 809 QTVDGTALRQWGVKEGPEIGRILKAVRLAWLEGKLQTEEEEKEFVL 854
>gi|311112586|ref|YP_003983808.1| tRNA adenylyltransferase [Rothia dentocariosa ATCC 17931]
gi|310944080|gb|ADP40374.1| tRNA adenylyltransferase [Rothia dentocariosa ATCC 17931]
Length = 474
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 91/441 (20%), Positives = 151/441 (34%), Gaps = 64/441 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKV 70
D + + L + +VGG VRD L N D D+ T P + RI S +
Sbjct: 12 PDAVELGELYRQAGFDLYLVGGLVRDELRNAPGEFTDFDMTTNATPAQSERILSAWGEHI 71
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
YGTI +++TT R++ + D R V F D KAD +RRDFTINA+ A
Sbjct: 72 WDIGKEYGTISARKNGAVYEVTTYRAEVYVADSRKPTVEFGTDLKADLIRRDFTINAMAA 131
Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
G+++D G DL ++ ED LR++R RF A + + +
Sbjct: 132 ALPSGEIVDLFHGTKDLAEGVLRTPRSPQESFSEDPLRMMRAARFAARFN-LTVAPEVFE 190
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH----------------MYNGGIFK 232
A + ++I+S+ER+ E+ KL+ A P + +
Sbjct: 191 AMQQMASRIEIISAERVRDELIKLICADYPRVGLNLLVETGLADYVLPELPALRMEMDPS 250
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKK------------- 276
DV E SL + Q IE E + D +LRF L+ K
Sbjct: 251 HHHKDVYEHSLKVMEQAIEKETAADGPCPAPDFVLRFASLLHDIGKPKTRRFEKDGSVSF 310
Query: 277 ---------SILSMAKKFSLPREIRYFLISFFNCNF-----NQKTLSIPEIKKLFYLYGD 322
+ + + + + + + +++ G+
Sbjct: 311 LQHDMVGARMVKKRMRALRFDNDTIKAVARLVELHMRFYGYREAGWTDSAVRRYVRDAGE 370
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK 372
+ + +L + + Q D+ L G+ +++
Sbjct: 371 Q--LQRLHRLSRSDVTTRNKRMARSLAQAYDDLERRIDELAAQEELDAMRPELDGEQIME 428
Query: 373 -YGIPPGKKVGNILVHCKQEW 392
GI PG VG
Sbjct: 429 VLGIDPGPLVGQAYKFLLNLR 449
>gi|218552724|ref|YP_002385637.1| poly(A) polymerase I [Escherichia coli IAI1]
gi|218693609|ref|YP_002401276.1| poly(A) polymerase I [Escherichia coli 55989]
gi|256020021|ref|ZP_05433886.1| poly(A) polymerase I [Shigella sp. D9]
gi|293476802|ref|ZP_06665210.1| poly(A) polymerase [Escherichia coli B088]
gi|332281167|ref|ZP_08393580.1| poly(A) polymerase I [Shigella sp. D9]
gi|218350341|emb|CAU96024.1| poly(A) polymerase I [Escherichia coli 55989]
gi|218359492|emb|CAQ97030.1| poly(A) polymerase I [Escherichia coli IAI1]
gi|291321255|gb|EFE60697.1| poly(A) polymerase [Escherichia coli B088]
gi|332103519|gb|EGJ06865.1| poly(A) polymerase I [Shigella sp. D9]
Length = 472
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 134/394 (34%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + + +F+ +F +
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCEYHLFQPLFPTI 286
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 406
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 407 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 440
>gi|294142393|ref|YP_003558371.1| polyA polymerase [Shewanella violacea DSS12]
gi|293328862|dbj|BAJ03593.1| polyA polymerase [Shewanella violacea DSS12]
Length = 435
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 73/245 (29%), Positives = 113/245 (46%), Gaps = 16/245 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + +F R
Sbjct: 2 SENAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKGLFRNCRL--- 58
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ TLR +GR + D+ RRD
Sbjct: 59 -IGRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKTNAEGRLLRDNVYGTIDEDAERRD 117
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D + Y GGL DL++RTI+ IGD + R ED +R+LR RF
Sbjct: 118 FTVNALYYDISDFSIHSYGGGLQDLQSRTIRMIGDPNTRYREDPVRMLRAVRFATKLNM- 176
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
I+ D + LK + + R++ EI KL + LN M + G+F+ +F V
Sbjct: 177 TIEKDTAAPISELAPLLKDIPAARMYEEILKLFFNGHALNNFNMMRDLGLFEPLFPLVNS 236
Query: 241 ISLDQ 245
+D+
Sbjct: 237 QLVDE 241
>gi|293408235|ref|ZP_06652075.1| pcnB [Escherichia coli B354]
gi|301026010|ref|ZP_07189491.1| polynucleotide adenylyltransferase [Escherichia coli MS 69-1]
gi|331671653|ref|ZP_08372451.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA280]
gi|291472486|gb|EFF14968.1| pcnB [Escherichia coli B354]
gi|300395720|gb|EFJ79258.1| polynucleotide adenylyltransferase [Escherichia coli MS 69-1]
gi|331071498|gb|EGI42855.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA280]
Length = 454
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|284919920|emb|CBG32975.1| poly(A) polymerase [Escherichia coli 042]
Length = 465
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 45 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 101
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 102 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 160
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 161 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 220
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 221 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 279
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 280 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 339
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 340 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 399
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 400 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 433
>gi|255021401|ref|ZP_05293449.1| Poly(A) polymerase [Acidithiobacillus caldus ATCC 51756]
gi|254969264|gb|EET26778.1| Poly(A) polymerase [Acidithiobacillus caldus ATCC 51756]
Length = 499
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 58/240 (24%), Positives = 107/240 (44%), Gaps = 14/240 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
S + +L+ L++ ++ +VGG+VRD L+ +D D+AT P++V ++F +
Sbjct: 53 SSGALQVLNTLHQAGHQAYLVGGSVRDLLLGREPKDYDVATDARPEQVRKLFRRN---AR 109
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD---------LITDGRYAKVVFTRDWKADSLRRDF 122
+ + + + ++ T R GR + D+ RRDF
Sbjct: 110 LIGRRFILVHVQFGPEIVEVATFRGQGESAEETSERSASGRILADNVYGSLEEDAGRRDF 169
Query: 123 TINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T NALY + ++D+ GL DL+ ++ IGD R ED +R+LR RF A G +
Sbjct: 170 TANALYYNIADRSILDFADGLTDLQAGRLRMIGDPEQRYREDPVRMLRAVRFAAKLGFQM 229
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ + L+ + S R++ E KL + ++ + G+F +F + +
Sbjct: 230 DAAVEAAIAPCRDLLLE-VPSARLFEETIKLFLTGHAQSSFDLLRRTGLFAALFPQLDRV 288
>gi|89107024|ref|AP_000804.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. W3110]
gi|162135892|ref|NP_414685.4| poly(A) polymerase I [Escherichia coli str. K-12 substr. MG1655]
gi|170079780|ref|YP_001729100.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. DH10B]
gi|238899542|ref|YP_002925338.1| poly(A) polymerase I [Escherichia coli BW2952]
gi|254791278|ref|YP_003076115.1| poly(A) polymerase I [Escherichia coli O157:H7 str. TW14359]
gi|115311610|sp|P0ABF3|PCNB_ECO57 RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid
copy number protein
gi|115311611|sp|P0ABF2|PCNB_ECOL6 RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid
copy number protein
gi|115311612|sp|P0ABF1|PCNB_ECOLI RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid
copy number protein
gi|85674351|dbj|BAB96720.2| poly(A) polymerase I [Escherichia coli str. K12 substr. W3110]
gi|87081691|gb|AAC73254.2| poly(A) polymerase I [Escherichia coli str. K-12 substr. MG1655]
gi|169887615|gb|ACB01322.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. DH10B]
gi|238862072|gb|ACR64070.1| poly(A) polymerase I [Escherichia coli BW2952]
gi|254590678|gb|ACT70039.1| poly(A) polymerase I [Escherichia coli O157:H7 str. TW14359]
gi|323380078|gb|ADX52346.1| poly(A) polymerase [Escherichia coli KO11]
Length = 465
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 45 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 101
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 102 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 160
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 161 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 220
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 221 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 279
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 280 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 339
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 340 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 399
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 400 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 433
>gi|117622430|ref|YP_851343.1| poly(A) polymerase I [Escherichia coli APEC O1]
gi|168751363|ref|ZP_02776385.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4113]
gi|168755755|ref|ZP_02780762.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4401]
gi|168764713|ref|ZP_02789720.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4501]
gi|168770386|ref|ZP_02795393.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4486]
gi|168782034|ref|ZP_02807041.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4076]
gi|168789251|ref|ZP_02814258.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC869]
gi|168801481|ref|ZP_02826488.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC508]
gi|170680324|ref|YP_001742271.1| poly(A) polymerase I [Escherichia coli SMS-3-5]
gi|187731223|ref|YP_001878946.1| poly(A) polymerase I [Shigella boydii CDC 3083-94]
gi|188493474|ref|ZP_03000744.1| poly(A) polymerase [Escherichia coli 53638]
gi|191166336|ref|ZP_03028168.1| poly(A) polymerase [Escherichia coli B7A]
gi|191172771|ref|ZP_03034308.1| poly(A) polymerase [Escherichia coli F11]
gi|193063166|ref|ZP_03044257.1| poly(A) polymerase [Escherichia coli E22]
gi|194428279|ref|ZP_03060821.1| poly(A) polymerase [Escherichia coli B171]
gi|194433394|ref|ZP_03065673.1| poly(A) polymerase [Shigella dysenteriae 1012]
gi|195938175|ref|ZP_03083557.1| poly(A) polymerase I [Escherichia coli O157:H7 str. EC4024]
gi|208807142|ref|ZP_03249479.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4206]
gi|208814587|ref|ZP_03255916.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4045]
gi|208821338|ref|ZP_03261658.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4042]
gi|209398537|ref|YP_002268752.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4115]
gi|215485303|ref|YP_002327734.1| poly(A) polymerase I [Escherichia coli O127:H6 str. E2348/69]
gi|217326217|ref|ZP_03442301.1| poly(A) polymerase [Escherichia coli O157:H7 str. TW14588]
gi|227884943|ref|ZP_04002748.1| polynucleotide adenylyltransferase [Escherichia coli 83972]
gi|256025455|ref|ZP_05439320.1| poly(A) polymerase I [Escherichia sp. 4_1_40B]
gi|260842377|ref|YP_003220155.1| poly(A) polymerase I [Escherichia coli O103:H2 str. 12009]
gi|261226898|ref|ZP_05941179.1| poly(A) polymerase I [Escherichia coli O157:H7 str. FRIK2000]
gi|261255302|ref|ZP_05947835.1| poly(A) polymerase I [Escherichia coli O157:H7 str. FRIK966]
gi|300816181|ref|ZP_07096404.1| polynucleotide adenylyltransferase [Escherichia coli MS 107-1]
gi|300938547|ref|ZP_07153283.1| polynucleotide adenylyltransferase [Escherichia coli MS 21-1]
gi|300949830|ref|ZP_07163800.1| polynucleotide adenylyltransferase [Escherichia coli MS 116-1]
gi|300956012|ref|ZP_07168342.1| polynucleotide adenylyltransferase [Escherichia coli MS 175-1]
gi|300984714|ref|ZP_07177077.1| polynucleotide adenylyltransferase [Escherichia coli MS 200-1]
gi|300993664|ref|ZP_07180491.1| polynucleotide adenylyltransferase [Escherichia coli MS 45-1]
gi|301028631|ref|ZP_07191857.1| polynucleotide adenylyltransferase [Escherichia coli MS 196-1]
gi|301049947|ref|ZP_07196868.1| polynucleotide adenylyltransferase [Escherichia coli MS 185-1]
gi|301646461|ref|ZP_07246340.1| polynucleotide adenylyltransferase [Escherichia coli MS 146-1]
gi|307136743|ref|ZP_07496099.1| poly(A) polymerase I [Escherichia coli H736]
gi|307311408|ref|ZP_07591050.1| poly(A) polymerase [Escherichia coli W]
gi|309796317|ref|ZP_07690726.1| polynucleotide adenylyltransferase [Escherichia coli MS 145-7]
gi|312966274|ref|ZP_07780500.1| poly(A) polymerase family protein [Escherichia coli 2362-75]
gi|331640597|ref|ZP_08341745.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H736]
gi|331651047|ref|ZP_08352075.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli M718]
gi|331661215|ref|ZP_08362147.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA206]
gi|331681528|ref|ZP_08382165.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H299]
gi|25389668|pir||C90647 poly(A) polymerase I [imported] - Escherichia coli (strain O157:H7,
substrain RIMD 0509952)
gi|13359603|dbj|BAB33570.1| poly(A) polymerase I [Escherichia coli O157:H7 str. Sakai]
gi|73854241|gb|AAZ86948.1| poly(A) polymerase I [Shigella sonnei Ss046]
gi|115511554|gb|ABI99628.1| poly(A) polymerase I [Escherichia coli APEC O1]
gi|170518042|gb|ACB16220.1| poly(A) polymerase [Escherichia coli SMS-3-5]
gi|187428215|gb|ACD07489.1| poly(A) polymerase [Shigella boydii CDC 3083-94]
gi|188014580|gb|EDU52702.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4113]
gi|188488673|gb|EDU63776.1| poly(A) polymerase [Escherichia coli 53638]
gi|189000464|gb|EDU69450.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4076]
gi|189356985|gb|EDU75404.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4401]
gi|189360734|gb|EDU79153.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4486]
gi|189365327|gb|EDU83743.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4501]
gi|189371104|gb|EDU89520.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC869]
gi|189376394|gb|EDU94810.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC508]
gi|190903587|gb|EDV63304.1| poly(A) polymerase [Escherichia coli B7A]
gi|190906921|gb|EDV66523.1| poly(A) polymerase [Escherichia coli F11]
gi|192931074|gb|EDV83677.1| poly(A) polymerase [Escherichia coli E22]
gi|194413654|gb|EDX29934.1| poly(A) polymerase [Escherichia coli B171]
gi|194418322|gb|EDX34412.1| poly(A) polymerase [Shigella dysenteriae 1012]
gi|208726943|gb|EDZ76544.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4206]
gi|208735864|gb|EDZ84551.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4045]
gi|208741461|gb|EDZ89143.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4042]
gi|209159937|gb|ACI37370.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4115]
gi|209746094|gb|ACI71354.1| poly(A) polymerase I [Escherichia coli]
gi|209746096|gb|ACI71355.1| poly(A) polymerase I [Escherichia coli]
gi|209746098|gb|ACI71356.1| poly(A) polymerase I [Escherichia coli]
gi|209746100|gb|ACI71357.1| poly(A) polymerase I [Escherichia coli]
gi|209746102|gb|ACI71358.1| poly(A) polymerase I [Escherichia coli]
gi|215263375|emb|CAS07694.1| poly(A) polymerase I [Escherichia coli O127:H6 str. E2348/69]
gi|217322438|gb|EEC30862.1| poly(A) polymerase [Escherichia coli O157:H7 str. TW14588]
gi|227838081|gb|EEJ48547.1| polynucleotide adenylyltransferase [Escherichia coli 83972]
gi|257757524|dbj|BAI29021.1| poly(A) polymerase I [Escherichia coli O103:H2 str. 12009]
gi|260450652|gb|ACX41074.1| poly(A) polymerase [Escherichia coli DH1]
gi|294490657|gb|ADE89413.1| poly(A) polymerase [Escherichia coli IHE3034]
gi|299878345|gb|EFI86556.1| polynucleotide adenylyltransferase [Escherichia coli MS 196-1]
gi|300298309|gb|EFJ54694.1| polynucleotide adenylyltransferase [Escherichia coli MS 185-1]
gi|300306620|gb|EFJ61140.1| polynucleotide adenylyltransferase [Escherichia coli MS 200-1]
gi|300317139|gb|EFJ66923.1| polynucleotide adenylyltransferase [Escherichia coli MS 175-1]
gi|300406499|gb|EFJ90037.1| polynucleotide adenylyltransferase [Escherichia coli MS 45-1]
gi|300450779|gb|EFK14399.1| polynucleotide adenylyltransferase [Escherichia coli MS 116-1]
gi|300456499|gb|EFK19992.1| polynucleotide adenylyltransferase [Escherichia coli MS 21-1]
gi|300531388|gb|EFK52450.1| polynucleotide adenylyltransferase [Escherichia coli MS 107-1]
gi|301075330|gb|EFK90136.1| polynucleotide adenylyltransferase [Escherichia coli MS 146-1]
gi|306908387|gb|EFN38885.1| poly(A) polymerase [Escherichia coli W]
gi|308120021|gb|EFO57283.1| polynucleotide adenylyltransferase [Escherichia coli MS 145-7]
gi|312289517|gb|EFR17411.1| poly(A) polymerase family protein [Escherichia coli 2362-75]
gi|315059363|gb|ADT73690.1| poly(A) polymerase I [Escherichia coli W]
gi|315134834|dbj|BAJ41993.1| poly(A) polymerase I [Escherichia coli DH1]
gi|315285223|gb|EFU44668.1| polynucleotide adenylyltransferase [Escherichia coli MS 110-3]
gi|315294623|gb|EFU53970.1| polynucleotide adenylyltransferase [Escherichia coli MS 153-1]
gi|315300716|gb|EFU59943.1| polynucleotide adenylyltransferase [Escherichia coli MS 16-3]
gi|315616374|gb|EFU96992.1| poly(A) polymerase family protein [Escherichia coli 3431]
gi|320177485|gb|EFW52481.1| Poly(A) polymerase [Shigella dysenteriae CDC 74-1112]
gi|320186563|gb|EFW61288.1| Poly(A) polymerase [Shigella flexneri CDC 796-83]
gi|320190332|gb|EFW64982.1| Poly(A) polymerase [Escherichia coli O157:H7 str. EC1212]
gi|320639950|gb|EFX09535.1| poly(A) polymerase I [Escherichia coli O157:H7 str. G5101]
gi|320647543|gb|EFX16338.1| poly(A) polymerase I [Escherichia coli O157:H- str. 493-89]
gi|320652877|gb|EFX21115.1| poly(A) polymerase I [Escherichia coli O157:H- str. H 2687]
gi|320658265|gb|EFX25994.1| poly(A) polymerase I [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320663575|gb|EFX30859.1| poly(A) polymerase I [Escherichia coli O55:H7 str. USDA 5905]
gi|320668887|gb|EFX35682.1| poly(A) polymerase I [Escherichia coli O157:H7 str. LSU-61]
gi|323160155|gb|EFZ46115.1| poly(A) polymerase family protein [Escherichia coli E128010]
gi|323166039|gb|EFZ51819.1| poly(A) polymerase family protein [Shigella sonnei 53G]
gi|323181842|gb|EFZ67255.1| poly(A) polymerase family protein [Escherichia coli 1357]
gi|323190462|gb|EFZ75737.1| poly(A) polymerase family protein [Escherichia coli RN587/1]
gi|323934984|gb|EGB31357.1| poly(A) polymerase [Escherichia coli E1520]
gi|323939892|gb|EGB36091.1| poly(A) polymerase [Escherichia coli E482]
gi|323945619|gb|EGB41668.1| poly(A) polymerase [Escherichia coli H120]
gi|323950857|gb|EGB46734.1| poly(A) polymerase [Escherichia coli H252]
gi|323955105|gb|EGB50880.1| poly(A) polymerase [Escherichia coli H263]
gi|323970690|gb|EGB65945.1| poly(A) polymerase [Escherichia coli TA007]
gi|324008275|gb|EGB77494.1| polynucleotide adenylyltransferase [Escherichia coli MS 57-2]
gi|324012201|gb|EGB81420.1| polynucleotide adenylyltransferase [Escherichia coli MS 60-1]
gi|324017792|gb|EGB87011.1| polynucleotide adenylyltransferase [Escherichia coli MS 117-3]
gi|324118493|gb|EGC12387.1| poly(A) polymerase [Escherichia coli E1167]
gi|326339802|gb|EGD63610.1| Poly(A) polymerase [Escherichia coli O157:H7 str. 1044]
gi|326345137|gb|EGD68880.1| Poly(A) polymerase [Escherichia coli O157:H7 str. 1125]
gi|331040343|gb|EGI12550.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H736]
gi|331051501|gb|EGI23550.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli M718]
gi|331052257|gb|EGI24296.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA206]
gi|331081749|gb|EGI52910.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H299]
gi|332095178|gb|EGJ00207.1| poly(A) polymerase family protein [Shigella boydii 5216-82]
gi|332097927|gb|EGJ02900.1| poly(A) polymerase family protein [Shigella dysenteriae 155-74]
gi|332098923|gb|EGJ03874.1| poly(A) polymerase family protein [Shigella boydii 3594-74]
Length = 454
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|300919704|ref|ZP_07136192.1| polynucleotide adenylyltransferase [Escherichia coli MS 115-1]
gi|300413238|gb|EFJ96548.1| polynucleotide adenylyltransferase [Escherichia coli MS 115-1]
Length = 454
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNISDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQSKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|320197403|gb|EFW72017.1| Poly(A) polymerase [Escherichia coli WV_060327]
Length = 454
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISQETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|307629719|gb|ADN74023.1| poly(A) polymerase I [Escherichia coli UM146]
Length = 454
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQAKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|253774829|ref|YP_003037660.1| poly(A) polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253325873|gb|ACT30475.1| poly(A) polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
Length = 472
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNISDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 406
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 407 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 440
>gi|309787190|ref|ZP_07681802.1| poly(A) polymerase family protein [Shigella dysenteriae 1617]
gi|81239683|gb|ABB60393.1| poly(A) polymerase I [Shigella dysenteriae Sd197]
gi|308924768|gb|EFP70263.1| poly(A) polymerase family protein [Shigella dysenteriae 1617]
Length = 454
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIKQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|225076461|ref|ZP_03719660.1| hypothetical protein NEIFLAOT_01507 [Neisseria flavescens
NRL30031/H210]
gi|224952140|gb|EEG33349.1| hypothetical protein NEIFLAOT_01507 [Neisseria flavescens
NRL30031/H210]
Length = 450
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 61/302 (20%), Positives = 122/302 (40%), Gaps = 10/302 (3%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ L++ ++ +VGGAVRD L+ + +D DIAT P+++ ++F ++R
Sbjct: 39 AAEKVAKRLHEAGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKVFRRSRI----I 94
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 95 GRRFQIVHVMIGPETIEVTTFRGGNKVQQNAQGRIMKDNTYGSIEEDAMRRDFTCNALYY 154
Query: 130 -DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ ++ D+ G+ D+ ++ + IGD R ED +RILR R G ++ +
Sbjct: 155 DPIKEEIWDFHQGVADVADKKLVMIGDPAERYQEDPVRILRAVRLSGKLGF-KVEEQTAL 213
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ LK R++ EI K+L + + + + GI + I + + + +
Sbjct: 214 PIAEYAGRLKNEPVARLFDEILKILFSGYSRACLKRLNDLGIPEGIHPLLDALKTAETAD 273
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ + + + ++L R + + T+
Sbjct: 274 KRMIMLALKNTDERIRADKSVSVGFVLAAVLWPTLNAMWQRNLSHGQKPVPALMDAMNTM 333
Query: 309 SI 310
Sbjct: 334 RD 335
>gi|70732584|ref|YP_262347.1| poly(A) polymerase [Pseudomonas fluorescens Pf-5]
gi|68346883|gb|AAY94489.1| poly(A) polymerase [Pseudomonas fluorescens Pf-5]
Length = 555
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD L+N++ +D D+AT+ P++V F R
Sbjct: 134 AVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQVKAEFRNARI----IG 189
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ + GR + + D+ RR
Sbjct: 190 RRFKLVHIHFGREIIEVATFRANHPQNEDDEDSNQSSRNESGRILRDNVYGTLEEDAQRR 249
Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D + I DY G++D+RN I+ IGD R ED +R+LR RF A
Sbjct: 250 DFTINALYYDPVSERILDYANGVHDIRNNLIRLIGDPRQRYQEDPVRMLRAVRFAAKLNF 309
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + L+ + S R++ E+ KL + + + + +F +F
Sbjct: 310 -GIEKHTAAPIRELAPMLREIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFP 365
>gi|293399437|ref|ZP_06643590.1| poly(A) polymerase [Neisseria gonorrhoeae F62]
gi|291610006|gb|EFF39128.1| poly(A) polymerase [Neisseria gonorrhoeae F62]
Length = 451
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 10/228 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLR----SDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKGHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IG+A R ED +RILR R G +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGF-ELSEQTAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
++ LK R++ EI KLL + + + + I L
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDIHPL 262
>gi|219669447|ref|YP_002459882.1| polynucleotide adenylyltransferase region [Desulfitobacterium
hafniense DCB-2]
gi|219539707|gb|ACL21446.1| Polynucleotide adenylyltransferase region [Desulfitobacterium
hafniense DCB-2]
Length = 873
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 81/406 (19%), Positives = 148/406 (36%), Gaps = 24/406 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV-IP 72
+ L +VGG VRD L+ + QD+D R ++ V +
Sbjct: 462 AAQQVADEL---GYSVFVVGGFVRDILLKVPTQDLDFVIEGDGHAFARALAQRLQDVQVV 518
Query: 73 TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+GT ++ + D+ + R + + V + D RRDFTINA+
Sbjct: 519 FHDQFGTARLDFADGSHLDVASSRREDYSSPGALPQVEESRLRDDMFRRDFTINAMAIAV 578
Query: 132 QG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+++DY GGL DL+ I+F+ + +ED RILR RF YG +
Sbjct: 579 NSVRYGELVDYYGGLRDLKQGEIRFLH--NLSFIEDPTRILRALRFAGRYGFRLAKETRE 636
Query: 188 VASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
G+ + LS ER E +L + + G+F++ F
Sbjct: 637 GLYTALDAGVLQKLSIERFTEEFMHMLSELKFGVMGESLLDMGVFRKWFGAELPWDF--- 693
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
I ++++ + D+ + +K L RE++ FF+
Sbjct: 694 -----THPGLNQAISPERKWLICLRRMDRSQFERIEEKLRLARELKGIAYKFFDIMDGLL 748
Query: 307 TLSIPEIKKLFYLYGDKVM----IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+L + E Y + + + + L + D F + + K
Sbjct: 749 SLGVGEKGSEASPYAREKISLKSLDQYLEGLPALLMEVLLWDERFRDSLEAYTEAVKAIH 808
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G + ++G+ G ++G IL + W+ Q +E+ +L
Sbjct: 809 QTVDGTALRQWGVKEGPEIGRILKAVRLAWLEGKLQTEEEEKEFVL 854
>gi|170021503|ref|YP_001726457.1| poly(A) polymerase I [Escherichia coli ATCC 8739]
gi|169756431|gb|ACA79130.1| poly(A) polymerase [Escherichia coli ATCC 8739]
gi|242375976|emb|CAQ30658.1| poly(A) polymerase I [Escherichia coli BL21(DE3)]
Length = 465
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 45 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 101
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 102 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNISDRTTSQRGQNGMLLRDNIFGSIEEDAQR 160
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 161 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 220
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 221 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 279
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 280 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 339
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 340 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 399
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 400 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 433
>gi|56964308|ref|YP_176039.1| hypothetical protein ABC2543 [Bacillus clausii KSM-K16]
gi|56910551|dbj|BAD65078.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 698
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 59/402 (14%), Positives = 116/402 (28%), Gaps = 29/402 (7%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L I + ++ + +VGG VRD + +DID+ + + + +
Sbjct: 319 LQKIGAFADELQVPVYLVGGLVRDFFLKRPHKDIDLVVEGDGIAFAKQLATAFGGSVRSH 378
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133
S+GT ++ DI T R + V D RRDF+INA+
Sbjct: 379 ESFGTATW-ANEQDIDIVTCRKEFYLQKGALPTVRPASIYEDLARRDFSINAMAIQINRS 437
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
V+D G L ++ I+ + +ED R+ R RF A+
Sbjct: 438 SFGNVLDVFQGKQALIDKHIRILHP--LSFIEDPTRLFRAVRFGLRLNFSLSSETIHQAT 495
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
I + + + N G+ E F + ++ V
Sbjct: 496 KTGAALHHISAKRLRQE--------------LDLLANEGVLFEGFRQLADL------HVW 535
Query: 251 EAEQVFEWKIDSLLRF-IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ + + + +A R + +
Sbjct: 536 TTLFGSRFSERAWRHMANLQQHGLNDGMFFLLAGAVDCTRLDVASRYALTKQEKRLVEET 595
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL-SDIIHWKKPLFPLTGD 368
+ + + ++ + + +L + LTG
Sbjct: 596 SLPVWQQLAPTASLGEAHRDLARISSEIVRFYSEAELPLSPLLRRYAEKRTQFKPLLTGA 655
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
D++K G PG L+ + ++ + L + K
Sbjct: 656 DLLKAGYQPGPVFTQWLLEIECLQLDGHIATKDQALAWIAEK 697
>gi|194439099|ref|ZP_03071181.1| poly(A) polymerase [Escherichia coli 101-1]
gi|254160263|ref|YP_003043371.1| poly(A) polymerase I [Escherichia coli B str. REL606]
gi|297520614|ref|ZP_06939000.1| poly(A) polymerase I [Escherichia coli OP50]
gi|300931725|ref|ZP_07147029.1| polynucleotide adenylyltransferase [Escherichia coli MS 187-1]
gi|312970241|ref|ZP_07784423.1| poly(A) polymerase family protein [Escherichia coli 1827-70]
gi|194421918|gb|EDX37923.1| poly(A) polymerase [Escherichia coli 101-1]
gi|253972164|gb|ACT37835.1| poly(A) polymerase I [Escherichia coli B str. REL606]
gi|253976373|gb|ACT42043.1| poly(A) polymerase I [Escherichia coli BL21(DE3)]
gi|300460488|gb|EFK23981.1| polynucleotide adenylyltransferase [Escherichia coli MS 187-1]
gi|310337739|gb|EFQ02850.1| poly(A) polymerase family protein [Escherichia coli 1827-70]
gi|323960087|gb|EGB55733.1| poly(A) polymerase [Escherichia coli H489]
gi|332341476|gb|AEE54810.1| poly(A) polymerase PcnB [Escherichia coli UMNK88]
Length = 454
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNISDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|193067681|ref|ZP_03048648.1| poly(A) polymerase [Escherichia coli E110019]
gi|192959093|gb|EDV89529.1| poly(A) polymerase [Escherichia coli E110019]
Length = 454
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 134/394 (34%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLEKAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|323171311|gb|EFZ56959.1| poly(A) polymerase family protein [Escherichia coli LT-68]
Length = 454
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 134/394 (34%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRNFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|50122241|ref|YP_051408.1| poly(A) polymerase I [Pectobacterium atrosepticum SCRI1043]
gi|49612767|emb|CAG76217.1| poly(A) polymerase [Pectobacterium atrosepticum SCRI1043]
Length = 482
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 76/397 (19%), Positives = 131/397 (32%), Gaps = 51/397 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F R
Sbjct: 57 SDNALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRNCRL--- 113
Query: 72 PTSISYGTIKIICRKKYFDITTLRS---------------DLITDGRYAKVVFTRDWKAD 116
+ I+ + ++ T R G + + D
Sbjct: 114 -VGRRFRLAHIMFGPEVIEVATFRGHHEQHQEQQEAKNSSQQAQSGMLLRDNIFGSVEED 172
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDF+IN+LY V DY GLNDLR I+ IGD R ED +R+LR RF A
Sbjct: 173 AQRRDFSINSLYYSISDFSVRDYTNGLNDLRQGVIRMIGDPETRYREDPVRMLRAVRFAA 232
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ + + L + + R++ E KLL++ + +F+ +F
Sbjct: 233 KLNM-TVSPETAEPIPRLAALLHDIPAARMFEESLKLLQSGYGYPTYKMLCEYQLFQPLF 291
Query: 236 LDVQEI----SLDQLSQVI---------EAEQVFEWKIDSLLRFIVLISWQDKKS----- 277
+ S L +++ + L ++ +
Sbjct: 292 PLLSRHFTPNSDSTLERMVAQVLKNTDQRLQNDMRVNPAFLFSAMLWYPLIEHAQKLAQE 351
Query: 278 ------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
+ + + I + S + + K Y +
Sbjct: 352 SGLAYLDAFALAMNDVLDEQCRSLAIPKRITSLVRDIWQLQMRLSRRQGKRAYKLMEHPK 411
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
L L HQ+ + Q + P
Sbjct: 412 FRAAYDLLCLRAEIENHQELLRLAQWWGEFQVAAPPR 448
>gi|294788727|ref|ZP_06753968.1| poly(A) polymerase [Simonsiella muelleri ATCC 29453]
gi|294483209|gb|EFG30895.1| poly(A) polymerase [Simonsiella muelleri ATCC 29453]
Length = 438
Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats.
Identities = 68/386 (17%), Positives = 146/386 (37%), Gaps = 35/386 (9%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+++ L K ++ +VGGAVRDSL+ ++ +D D+AT P++V ++F ++R
Sbjct: 36 AEDVIKKLVKEGFEAYLVGGAVRDSLLGVAPKDFDVATNARPEQVEKLFRRSRI----IG 91
Query: 75 ISYGTIKIICRKKYFDITTLR---SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130
+ + ++ K+ +++T R + +GR K + D++RRDFT NALY D
Sbjct: 92 RRFPIVHVMSGKETVEVSTFRSGKTRQNANGRIVKDNGYGTLEQDAMRRDFTCNALYYDV 151
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ K+ID+ G+ND+R++ + IG+ R ED +RILR R + ID +
Sbjct: 152 IRHKIIDFHDGMNDIRHKKLVMIGEPAERYQEDPVRILRAIRLSGKLNFQ-IDENTAEPI 210
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----QEISLDQL 246
L+ R++ E+ K+L + + + + N I I + Q + +
Sbjct: 211 ASHAHLLQNEPVSRLFDELMKILFSGHAQGCLQQLQNLNINAPIHPLLTALQQNHNQMII 270
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + +Q + + +++ + + + + +
Sbjct: 271 KSLRQTDQRLQKGKS--VSMGFILAALFWGELKPYWQNAMARGQNTVAAMQAAINELRDE 328
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + + + ++ + L ++
Sbjct: 329 LEHGWGVPQRYSITMREIWAMQPHFELRRGTRPFRLLKQARFRAAYDFLLIRS------- 381
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEW 392
+ G + W
Sbjct: 382 -------------EFGEVSRELANWW 394
>gi|218547599|ref|YP_002381390.1| poly(A) polymerase I [Escherichia fergusonii ATCC 35469]
gi|218355140|emb|CAQ87747.1| poly(A) polymerase I [Escherichia fergusonii ATCC 35469]
Length = 472
Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats.
Identities = 67/394 (17%), Positives = 128/394 (32%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLKEGIIRLIGNPETRYREDPVRMLRAVRFAAKLN 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 228 MQ-ISPETAEPIPRLAALLNDVPPARLFEESLKLLQAGYGYETYKLLREYHLFQPLFPTI 286
Query: 239 ------------QEISLDQLSQV-IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + + L L + + ++
Sbjct: 287 TRYFTENGDSAMERMIIQVLKNTDNRIHNGLRVNPAFLFAAMFWYPLMETAQRIAQESGL 346
Query: 286 SLPREIRYFLIS-----------------FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ + + + K + +
Sbjct: 347 TWSDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 406
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + + + + P
Sbjct: 407 AYDLLALRAEVERNSELQRLAKWWGEFQVSAPPE 440
>gi|157159375|ref|YP_001461313.1| poly(A) polymerase I [Escherichia coli E24377A]
gi|157159609|ref|YP_001456927.1| poly(A) polymerase I [Escherichia coli HS]
gi|260853354|ref|YP_003227245.1| poly(A) polymerase I [Escherichia coli O26:H11 str. 11368]
gi|260866293|ref|YP_003232695.1| poly(A) polymerase I [Escherichia coli O111:H- str. 11128]
gi|300825359|ref|ZP_07105437.1| polynucleotide adenylyltransferase [Escherichia coli MS 119-7]
gi|300905560|ref|ZP_07123319.1| polynucleotide adenylyltransferase [Escherichia coli MS 84-1]
gi|300923068|ref|ZP_07139133.1| polynucleotide adenylyltransferase [Escherichia coli MS 182-1]
gi|301303752|ref|ZP_07209872.1| polynucleotide adenylyltransferase [Escherichia coli MS 124-1]
gi|301330067|ref|ZP_07222743.1| polynucleotide adenylyltransferase [Escherichia coli MS 78-1]
gi|331666385|ref|ZP_08367266.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA271]
gi|331680723|ref|ZP_08381382.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H591]
gi|157065289|gb|ABV04544.1| poly(A) polymerase [Escherichia coli HS]
gi|157081405|gb|ABV21113.1| poly(A) polymerase [Escherichia coli E24377A]
gi|257752003|dbj|BAI23505.1| poly(A) polymerase I [Escherichia coli O26:H11 str. 11368]
gi|257762649|dbj|BAI34144.1| poly(A) polymerase I [Escherichia coli O111:H- str. 11128]
gi|300402593|gb|EFJ86131.1| polynucleotide adenylyltransferase [Escherichia coli MS 84-1]
gi|300420630|gb|EFK03941.1| polynucleotide adenylyltransferase [Escherichia coli MS 182-1]
gi|300522172|gb|EFK43241.1| polynucleotide adenylyltransferase [Escherichia coli MS 119-7]
gi|300840879|gb|EFK68639.1| polynucleotide adenylyltransferase [Escherichia coli MS 124-1]
gi|300843913|gb|EFK71673.1| polynucleotide adenylyltransferase [Escherichia coli MS 78-1]
gi|315254944|gb|EFU34912.1| polynucleotide adenylyltransferase [Escherichia coli MS 85-1]
gi|323157782|gb|EFZ43885.1| poly(A) polymerase family protein [Escherichia coli EPECa14]
gi|323176455|gb|EFZ62047.1| poly(A) polymerase family protein [Escherichia coli 1180]
gi|331066596|gb|EGI38473.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA271]
gi|331072186|gb|EGI43522.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H591]
Length = 454
Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 134/394 (34%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|323964964|gb|EGB60430.1| poly(A) polymerase [Escherichia coli M863]
gi|327255121|gb|EGE66724.1| poly(A) polymerase family protein [Escherichia coli STEC_7v]
Length = 454
Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats.
Identities = 61/240 (25%), Positives = 104/240 (43%), Gaps = 18/240 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268
>gi|270340141|ref|ZP_06007176.2| polyA polymerase [Prevotella bergensis DSM 17361]
gi|270332525|gb|EFA43311.1| polyA polymerase [Prevotella bergensis DSM 17361]
Length = 509
Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats.
Identities = 73/489 (14%), Positives = 153/489 (31%), Gaps = 89/489 (18%)
Query: 10 FHDSDLI-NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-- 66
D D+ I + + +VGG VRD + DID+ V +
Sbjct: 14 LLDKDIFHKIGDAADSLSMECYVVGGYVRDLFLQRPSDDIDVVVVGSGIEVATKLRQLLG 73
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ ++GT ++ R + R + + V + D RRDFTINA
Sbjct: 74 GKAHLTVFRNFGTAQVKFRGIEVEFVGARKESYSHDSRKPHVEDGTLEDDQNRRDFTINA 133
Query: 127 LYADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ + D GL D+ + I+ D +D LR++R RF I
Sbjct: 134 MAVCLNRERFGELVDPFDGLADMEDGIIRTPLDPDITFSDDPLRMMRCVRFATQLKFY-I 192
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ + A + + +KI+S ERI +E+NK++ + P V + G+ I ++ +
Sbjct: 193 EDETFEALERNAERIKIISGERINTELNKIMLSDQPSRGFVDLQRCGLLALILPELTALD 252
Query: 243 LDQLSQVIEAEQVFEWKID----------------------------------------- 261
+ + + F ++
Sbjct: 253 VVETKNGRAHKNNFYHTLEVVDNLCQAQQQRMERINKELAQHAPDSKEAQDLQADLEHLQ 312
Query: 262 ---SLLRFIVLISWQDKKSILSMA----KKFSLPREI-------------------RYFL 295
LR+ L+ K F + ++
Sbjct: 313 ANQLWLRWGTLLHDVGKTKTKRWDHAAGWTFHNHNYVGSKMVPGIFRRLKLPMDAKMKYV 372
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
+ + ++ ++ + + L ++T ++ + L +
Sbjct: 373 QKLVDLHMRPIAIADEDVTDSAVRRLVNDAGNDVDDLMMLCEADITSKNRVKKQRFLENF 432
Query: 356 IHWKKP-------------LFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQ 401
++ + G+++++ + P ++VG + K +++ +
Sbjct: 433 RLVREKIADLRKKDFVRELQPCIDGNEIMQMFNLKPSREVGILKQTLKNAVLDNVVPNER 492
Query: 402 EDLHHLLRK 410
E L LL K
Sbjct: 493 EPLMQLLTK 501
>gi|226940321|ref|YP_002795395.1| PcnB [Laribacter hongkongensis HLHK9]
gi|226715248|gb|ACO74386.1| PcnB [Laribacter hongkongensis HLHK9]
Length = 450
Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats.
Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 12/237 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + S L + ++ +VGGAVRD L+ +D D+AT P+ V R+F ++R
Sbjct: 39 SPSALKVTSRLQEAGFEAYVVGGAVRDLLIGHEPKDFDVATNATPEEVHRLFRRSRI--- 95
Query: 72 PTSISYGTIKIICR-KKYFDITTLRS-----DLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + ++ + ++TT R GR DS RRDFT N
Sbjct: 96 -IGRRFRIVHVVFGRDEVIEVTTFRGDGRDLQTTESGRIISDNSYGSMADDSRRRDFTAN 154
Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY + + DY G+ D+ R + IG R ED +R+LR R A G +ID
Sbjct: 155 ALYYNPADESIHDYHHGVRDVTARRLVMIGQPIERYKEDPVRMLRAVRLAAKLGF-SIDE 213
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
L+ ++ R++ E+ K+L + + + G+ K IF + +
Sbjct: 214 STRKPISHLAPLLRDVAQARLFDEMLKMLHSGASWACLTRLRAEGLHKGIFPLLDAV 270
>gi|78044937|ref|YP_360768.1| polyA polymerase family protein [Carboxydothermus hydrogenoformans
Z-2901]
gi|77997052|gb|ABB15951.1| polyA polymerase family protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 864
Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats.
Identities = 85/408 (20%), Positives = 153/408 (37%), Gaps = 23/408 (5%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT--RYKVIPTSI 75
+ ++ + +VGG VRD L+ +D+DI + + KT K IP
Sbjct: 465 VGKWASQLGMRVFLVGGIVRDLLLGHKQKDLDIVVEGDALVLAQEVGKTLSAIKFIP-HE 523
Query: 76 SYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----AD 130
+ T II + D +T R + V + D RRDFTIN++
Sbjct: 524 RFKTASIILKNGQKIDFSTSRVEFYQHPAALPEVEVSTIREDLYRRDFTINSMAIEITYG 583
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G++ D GGL DLR I+ + + +ED RILR RF + K ++ +
Sbjct: 584 HIGELFDPFGGLLDLREGIIRVLH--NLSFVEDPTRILRALRFLGRFNFKLEENTEKLLV 641
Query: 191 IKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQ-L 246
G +SS RI E+ + K+ L + + + G+F+E+F +E L +
Sbjct: 642 DAIAGGFLNLVSSARILYELKLIFAEKDILKILKFLKHYGVFQEVFPKAFYEEDYLKRYF 701
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS---LPREIRYFLISFFNCNF 303
+ +E ++ + L ++ + ++ + I KK+ E+
Sbjct: 702 NYTVEYFRLLKEMKIPWLHGVMGVYAKNLEGIEEFIKKYPLTGEEEEVLRQGALGIKEAL 761
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
+LS + K+ L + + L I
Sbjct: 762 KLLSLSREVKGVEIFETLTKLPPEGYWALYLLLDRFRARERFKTYFEELRFI------KP 815
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+TG+D+ G+ PG IL K I+ + E++ ++ +
Sbjct: 816 EITGEDLKALGLKPGPLYREILHKIKMLKIDGVLKNKDEEILYVKQNY 863
>gi|297243119|ref|ZP_06927057.1| tRNA nucleotidyltransferase/poly(A) polymerase [Gardnerella
vaginalis AMD]
gi|296889330|gb|EFH28064.1| tRNA nucleotidyltransferase/poly(A) polymerase [Gardnerella
vaginalis AMD]
Length = 475
Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats.
Identities = 83/467 (17%), Positives = 160/467 (34%), Gaps = 67/467 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + L + + +VGG VRD L++ D+D T+ P+ I +
Sbjct: 9 PEAIELGRLFAERHYELALVGGPVRDMLLHRVSHDLDFCTSARPEEFEPILRRWGHDGFW 68
Query: 72 PTSISYGTIKIICR-----KKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R + +ITT RSD D R +V + + D RRDFT+N
Sbjct: 69 DMGRKFGTLGAMRRRADGTEVKVEITTYRSDVYDPDSRKPEVQYGDTLEGDLSRRDFTVN 128
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG +DL ++ D +D LR++R RF A G +I++
Sbjct: 129 AMALRVPDLEFVDPFGGASDLAKGVLRTPVDPRQSFDDDPLRMMRAIRFVAQLGF-SIEA 187
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A + L I+S+ERI EI K+L + P + + GI + + ++ + L+
Sbjct: 188 NTAEAIVDMADRLDIVSAERIRDEITKMLLSDRPRKGLEALVESGIAQRVLPEIPALQLE 247
Query: 245 QLSQVIEAEQVFEW--------------------KIDSLLRFIVLISWQDKK-------- 276
+ + + VFE D LR L+ K
Sbjct: 248 -IDEHHRHKDVFEHTMMVLERAIALETDQEGPVPSPDLTLRLAALLHDIGKPKTRKFEDG 306
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYL 319
K + + N + Y+
Sbjct: 307 GKVSFHHHDVVGAKMTRKRLKALHFDHHLIDDVTELVNLHLRFHGYVDEPWTDSAVRRYV 366
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
+ +L + + + ++ + + G++
Sbjct: 367 KDSGHLYERLNRLTRADATTQNRRKSLMFEHAMDEMEERVKELKKQEDFNAIRPDVDGNE 426
Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+++ + PG VG H +++ + + L++ +
Sbjct: 427 IMQLLHLQPGPIVGEAYKHMLDYRLDNG-PVDHDIAVEELQRWYEET 472
>gi|90416970|ref|ZP_01224899.1| poly(A) polymerase [marine gamma proteobacterium HTCC2207]
gi|90331317|gb|EAS46561.1| poly(A) polymerase [marine gamma proteobacterium HTCC2207]
Length = 453
Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats.
Identities = 71/376 (18%), Positives = 140/376 (37%), Gaps = 23/376 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ D ++ +L K ++ +VGG VRD L+ L +D D+AT+ P V +F ++R
Sbjct: 35 MINRDAFKVVDVLQKAGFEAYVVGGCVRDLLIGLKPKDFDVATSAKPWEVKELFRRSRI- 93
Query: 70 VIPTSISYGTIKIICRKKYFDITTL-----------RSDLITDGRYAKVVFTRDWKADSL 118
+ + + ++ ++TT R G + + D+
Sbjct: 94 ---IGRRFQIVHVQFSREIIEVTTFRSNSSQSTSKNRRQQTDSGMLTRDNVFGTVEEDAS 150
Query: 119 RRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRD T+NALY D + D+ G++D+ + I+ IGD R ED +R+LR RF A
Sbjct: 151 RRDLTVNALYYDPSTNSIHDFTNGIDDVDAKIIRIIGDPETRFREDPVRLLRVARFAAKL 210
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G + +A + +S R++ E KL + L+ + +F I
Sbjct: 211 GFNIEPATANPMKHRAADLQQ-VSPPRLFDETLKLFMSGQGLDTFKILVEHRLFDYIVPQ 269
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLR------FIVLISWQDKKSILSMAKKFSLPREI 291
+ + D+ ++ D +R + + ++ +A F
Sbjct: 270 LGPMLNDRQGIPMKLVSQALINTDKRIRASQRVTPAFIYAALLWPAVQRLASNFEKNGNS 329
Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ +S + + I K F + ++ +L + +
Sbjct: 330 SPYALSKAAGEIILNQIPVTAIPKRFSIPMREIWDLQLHLRRRGGNRAQRLVEHPRFRAA 389
Query: 352 LSDIIHWKKPLFPLTG 367
++ ++ L G
Sbjct: 390 YDFVLLREQAGENLDG 405
>gi|218703399|ref|YP_002410918.1| poly(A) polymerase I [Escherichia coli UMN026]
gi|218430496|emb|CAR11362.1| poly(A) polymerase I [Escherichia coli UMN026]
Length = 472
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYNLLCEYHLFQPLFPTI 286
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 406
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 407 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 440
>gi|20807771|ref|NP_622942.1| tRNA nucleotidyltransferase/poly(A) polymerase [Thermoanaerobacter
tengcongensis MB4]
gi|254478691|ref|ZP_05092062.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Carboxydibrachium pacificum DSM 12653]
gi|20516327|gb|AAM24546.1| tRNA nucleotidyltransferase/poly(A) polymerase [Thermoanaerobacter
tengcongensis MB4]
gi|214035378|gb|EEB76081.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Carboxydibrachium pacificum DSM 12653]
Length = 390
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 75/408 (18%), Positives = 146/408 (35%), Gaps = 29/408 (7%)
Query: 10 FHDSDLINILSLL-NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+LI+ L + K KS IVGG VRD L+ + DID+ ++
Sbjct: 5 IEGKELISYLKEISQKVGVKSYIVGGVVRDFLLGVENWDIDVVVEGNGIDFAYELNEYIK 64
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ ++ T I D+ + R + + D D RRDFTIN L
Sbjct: 65 GELIEYPAFKTATIKKSGISIDVISARREYYDYPAALPRIEFADIYEDMRRRDFTINTLA 124
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + I G + + I + ++D RI R R+ Y I+++
Sbjct: 125 YDVLEEKILDYFGGIEDLKKGIIRV-LHEKSFIDDPTRIFRAIRYSVRYSF-EIEANTEA 182
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ K + +LS +RI +E+ +L+ I + GI K IF DV +++D+L
Sbjct: 183 LMKDSIKNISLLSEDRIRNELFLILKEPKAKEMIEKVIEYGIDKVIFKDV-PVNVDKLDV 241
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+E + +++ L I + + L + + L + F ++ +
Sbjct: 242 FVEDLDLSLFRLLILFYKIAEKDVEKVQKAL---------KLNKEHLKALRELIFLREEI 292
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ + LK+ + + + G
Sbjct: 293 KYRRWIRKLRETLESARNEVLKVLEVMEG---------------DKAKKIIESKPYIKGK 337
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
D+ G+ PG G +L + + + +E++ ++ ++ +
Sbjct: 338 DIKNLGVSPGPLYGELLDEVFKAKLEGRLKSKEEEI-SFVKNILRVGK 384
>gi|330443816|ref|YP_004376802.1| poly A polymerase [Chlamydophila pecorum E58]
gi|328806926|gb|AEB41099.1| poly A polymerase [Chlamydophila pecorum E58]
Length = 414
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 7/232 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
++++ L K + IVGG +RD L+ + +D DI+T+ P+ + +F
Sbjct: 27 FSPQALSVVKALRKAGYTAYIVGGCIRDLLLGTTPKDFDISTSAKPEEIKALFKNC---- 82
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYA 129
I + I + +++T RS K + D LRRDFTIN L+
Sbjct: 83 ILVGKRFRLAHIRFANQIIEVSTFRSGDTETDALITKDNLWGTPEEDVLRRDFTINGLFY 142
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + +IDY GG++DL N ++ IGD R +D +R+LR + + + +
Sbjct: 143 DPAEEAIIDYTGGMSDLSNHYLRTIGDPFMRFKQDPVRMLRLLKILSR-FQFTVAPQTQE 201
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
A + + L S R++ E+ K+L + + + + +F + +
Sbjct: 202 ALLACHRELTKSSQARVFEELIKMLNSGVSARFFRLLKENHLLEILFPYMDK 253
>gi|297539331|ref|YP_003675100.1| poly(A) polymerase [Methylotenera sp. 301]
gi|297258678|gb|ADI30523.1| poly(A) polymerase [Methylotenera sp. 301]
Length = 486
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 59/244 (24%), Positives = 106/244 (43%), Gaps = 19/244 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + L+K ++ IVGGAVRD L+N + +D D+AT P+ V RIF ++R
Sbjct: 68 LLSNAALKTTEGLHKAGFEAYIVGGAVRDLLLNRTPKDFDVATDATPEEVNRIFRRSRI- 126
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDL-------------ITDGRYAKVVFTRDWKAD 116
+ + ++ + +++T R GR + D
Sbjct: 127 ---IGKRFRLVHVLFGDETIEVSTFRGSHLETEGNPKGDSKTTDSGRIIRDNVFGSIVDD 183
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
++RRDFT NALY + +V+D+ G D++ ++ IG R ED +R+LR R A
Sbjct: 184 AVRRDFTANALYYNPASQEVLDFHHGYTDIKAGVLRMIGKPETRYAEDPVRMLRAVRLSA 243
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G ID K L+ + R++ E+ KL + + + ++ + + +
Sbjct: 244 KLG-LKIDQATQAPIAKMADLLQDVPPSRLFDEMLKLFLSGHAMESVSALREQHLHHGLL 302
Query: 236 LDVQ 239
+
Sbjct: 303 PMLD 306
>gi|320200334|gb|EFW74920.1| Poly(A) polymerase [Escherichia coli EC4100B]
Length = 454
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 134/394 (34%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCEYHLFQPLFPAI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|59800858|ref|YP_207570.1| hypothetical protein NGO0415 [Neisseria gonorrhoeae FA 1090]
gi|194098159|ref|YP_002001207.1| PcnB [Neisseria gonorrhoeae NCCP11945]
gi|240016171|ref|ZP_04722711.1| PcnB [Neisseria gonorrhoeae FA6140]
gi|59717753|gb|AAW89158.1| putative tRNA nucleotidyltransferase/poly(A) polymerase [Neisseria
gonorrhoeae FA 1090]
gi|193933449|gb|ACF29273.1| PcnB [Neisseria gonorrhoeae NCCP11945]
Length = 452
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 10/228 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IG+A R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGF-ELSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
++ LK R++ EI KLL + + + + I L
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDIHPL 262
>gi|261392805|emb|CAX50386.1| poly(A) polymerase (PAP; plasmid copy number protein) [Neisseria
meningitidis 8013]
Length = 453
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ + IGDA R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-ELSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I L + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHLLLNAL 267
>gi|262195628|ref|YP_003266837.1| tRNA adenylyltransferase [Haliangium ochraceum DSM 14365]
gi|262078975|gb|ACY14944.1| tRNA adenylyltransferase [Haliangium ochraceum DSM 14365]
Length = 471
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 87/411 (21%), Positives = 156/411 (37%), Gaps = 28/411 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ + + L++ +S VGGAVRD+L+ + D D+AT+ P V +F K + T
Sbjct: 37 VRAVCARLHEAGHQSVCVGGAVRDALLGRAPGDWDVATSAAPAEVQALFD----KTVDTG 92
Query: 75 ISYGTIKIIC-------RKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTIN 125
I +GT+ ++ R+ ++TT R D T + D RRDF IN
Sbjct: 93 IQHGTVTVMARPASGRGRRLPIEVTTFRGDGSYSDGRRPDSVTFGVPLREDLARRDFVIN 152
Query: 126 ALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ D + +ID GG DL I+ +G+ R ED LR++R RF A G +
Sbjct: 153 AMAYDPVRRALIDPFGGRRDLARGLIRAVGEPARRFDEDGLRVMRAVRFAAKLGFALDAA 212
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ +S ERI SE+ LL A+ + GI +I ++
Sbjct: 213 TEAAIPGALGRL-SQVSWERIRSELFALLVARAAAEGLAIAARTGILAQILPELAIEDDA 271
Query: 245 QLSQVIEAEQVFEWKI--DSLLRFIVLISWQD-KKSILSMAKKFSLPREIRYFLISFFNC 301
+ + D+ LR L+ + + + A++ R L+
Sbjct: 272 DAACWAQTLARLTATPEDDACLRLCALLWEVGAPRRLEAAARRLKTSNADRARLVGVNTW 331
Query: 302 NFNQKTLSIPEI--KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ + ++L G + + ++ A + + ++
Sbjct: 332 APRWRAYRDGDARLRELLAALGRARVPDAIALWRAQAAAEDRGEQAEALRELARRAQAIL 391
Query: 360 KP-------LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQE 402
L+G DV++ + PG+ VG +L + + + E
Sbjct: 392 DAGHPLATGELALSGGDVMRILDMKPGRAVGLLLEAALARVLVAPALNTPE 442
>gi|15605911|ref|NP_213288.1| poly A polymerase [Aquifex aeolicus VF5]
gi|2983086|gb|AAC06692.1| poly A polymerase [Aquifex aeolicus VF5]
Length = 824
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 81/394 (20%), Positives = 145/394 (36%), Gaps = 25/394 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ + + ++ IVGG VRD L+ V D+D + + ++ +
Sbjct: 440 AREVGQIAKEMGLRAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPF 499
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+GT + K + T R + V K D +RRDFTINA+ +
Sbjct: 500 PEFGTAHLKIGKLKLEFATARRETYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNLE 559
Query: 135 ----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+IDY GGL DL+++ I+ + +ED +RILR RF K S +
Sbjct: 560 DYGTLIDYFGGLRDLKDKVIRVLHP--VSFIEDPVRILRALRFAGRLNFKLSRSTEKLLK 617
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
GL + KL ++ I+ +Y E ++ + + L ++
Sbjct: 618 QAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQWNEKVLQKLY 677
Query: 251 EAEQVFEWKI---------DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-FN 300
+V +W L ++LIS D + ++ S P +R F
Sbjct: 678 ALRKVVDWHALEFSEERIDYGWLYLLILISNLDYERGKHFLEEMSAPSWVRETYKFMKFK 737
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
++ L + Y + + L L + I L + K
Sbjct: 738 LGSLKEELKKAKENYEVYRLLKPLHTS------VLLLLMLEEELKEKIKLYLEKLRKVKL 791
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
P + +++ K G+ GK++G + K+E +N
Sbjct: 792 PKEKI--EELKKQGLK-GKELGERIEELKREIMN 822
>gi|324112445|gb|EGC06422.1| poly(A) polymerase [Escherichia fergusonii B253]
gi|325496076|gb|EGC93935.1| poly(A) polymerase I [Escherichia fergusonii ECD227]
Length = 454
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 67/394 (17%), Positives = 128/394 (32%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLKEGIIRLIGNPETRYREDPVRMLRAVRFAAKLN 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 MQ-ISPETAEPIPRLAALLNDVPPARLFEESLKLLQAGYGYETYKLLREYHLFQPLFPTI 268
Query: 239 ------------QEISLDQLSQV-IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + + L L + + ++
Sbjct: 269 TRYFTENGDSAMERMIIQVLKNTDNRIHNGLRVNPAFLFAAMFWYPLMETAQRIAQESGL 328
Query: 286 SLPREIRYFLIS-----------------FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ + + + K + +
Sbjct: 329 TWSDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + + + + P
Sbjct: 389 AYDLLALRAEVERNSELQRLAKWWGEFQVSAPPE 422
>gi|322812373|pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii)
gi|322812374|pdb|3AQL|B Chain B, Structure Of Bacterial Protein (Apo Form Ii)
gi|322812377|pdb|3AQN|A Chain A, Complex Structure Of Bacterial Protein (Apo Form Ii)
gi|322812378|pdb|3AQN|B Chain B, Complex Structure Of Bacterial Protein (Apo Form Ii)
Length = 415
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 69/394 (17%), Positives = 132/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 18 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 74
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 75 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 133
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 134 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 193
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + ++ E KLL+A + +F+ +F +
Sbjct: 194 M-RISPETAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 252
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 253 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 312
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 313 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 372
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 373 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 406
>gi|240117553|ref|ZP_04731615.1| PcnB [Neisseria gonorrhoeae PID1]
gi|268603255|ref|ZP_06137422.1| poly(A) polymerase [Neisseria gonorrhoeae PID1]
gi|268587386|gb|EEZ52062.1| poly(A) polymerase [Neisseria gonorrhoeae PID1]
Length = 451
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 10/228 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IG+A R ED +RILR R G +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGF-ELSEQTAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
++ LK R++ EI KLL + + + + I L
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDIHPL 262
>gi|311693217|gb|ADP96090.1| polyA polymerase [marine bacterium HP15]
Length = 443
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 20/241 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+L LNK ++ +VGG VRD L+ +D DIAT P+ V +F +R
Sbjct: 30 SEPAKKVLHRLNKSGYEAYLVGGGVRDILLGGKPKDFDIATNATPEEVHDLFRNSRL--- 86
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRDWKADS 117
+ + ++ ++ ++TT R + G + + + D+
Sbjct: 87 -IGRRFRIVHVVFGREVIEVTTFRGNAAEADTDTDDDDRRTSEHGLLLRDNVYGNQEEDA 145
Query: 118 LRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
LRRDFT+NALY + VID+ G+ DLRNR ++ IGD R ED +R+LR RF A
Sbjct: 146 LRRDFTVNALYYCIRDFTVIDFANGIEDLRNRQLRLIGDPETRYREDPVRMLRAIRFAAK 205
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
G +I+ + + L + R++ E+ KL A + + + + +F
Sbjct: 206 LGF-DIEPETEAPIGELAPLLTHIPPARLFDEVLKLFSAGHGEATYDLLTRYNLLEPLFP 264
Query: 237 D 237
+
Sbjct: 265 E 265
>gi|296537169|ref|ZP_06899104.1| possible tRNA adenylyltransferase [Roseomonas cervicalis ATCC
49957]
gi|296262504|gb|EFH09194.1| possible tRNA adenylyltransferase [Roseomonas cervicalis ATCC
49957]
Length = 264
Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats.
Identities = 84/214 (39%), Positives = 124/214 (57%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+ VGG VRD+L V D+D+A P + KV T + +GT+ + +
Sbjct: 5 ARAVGGVVRDALAGRPVHDVDVAAPYPPREIADRLLAAGLKVFETGLQHGTVTAVLDHEP 64
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148
++T+LR DL TDGR+A+V +T DW+ D+ RRDFT NAL D +G + DY GG DL
Sbjct: 65 VEVTSLRRDLATDGRHAEVAWTTDWREDAARRDFTFNALSMDAEGHIWDYFGGREDLAAG 124
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208
++F+GD R+ EDYLR+LRFFRF A YG+ ++ L A A GL+ LS+ER+W E
Sbjct: 125 RVRFVGDPATRLAEDYLRVLRFFRFHARYGQGAPEAVALAALRDAVPGLQRLSAERVWME 184
Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ +LLE P A+ M G+ + + +++
Sbjct: 185 LKRLLEGPRPAAALALMRETGVLGAVLPEAGDLA 218
>gi|241760511|ref|ZP_04758604.1| poly(A) polymerase [Neisseria flavescens SK114]
gi|241319015|gb|EER55517.1| poly(A) polymerase [Neisseria flavescens SK114]
Length = 450
Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats.
Identities = 62/302 (20%), Positives = 122/302 (40%), Gaps = 10/302 (3%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
I L++ ++ +VGGAVRD L+ + +D DIAT P+++ ++F ++R
Sbjct: 39 AAEKIAKRLHEAGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKVFRRSRI----I 94
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 95 GRRFQIVHVMIGPETIEVTTFRGGDKVQQNAQGRIMKDNTYGSIEEDAMRRDFTCNALYY 154
Query: 130 -DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ ++ D+ G+ D+ ++ + IGD R ED +RILR R G ++ +
Sbjct: 155 DPIKEEIWDFHQGVADVADKKLVMIGDPAERYQEDPVRILRAVRLSGKLGF-EVEEQTAL 213
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ LK R++ EI K+L + + + + GI + I + + + +
Sbjct: 214 PIAEYAGRLKNEPVARLFDEILKILFSGHSRACLKRLNELGIPEGIHPLLDALKTAEAAD 273
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ + + + ++L R + + T+
Sbjct: 274 KRMIMLALKNTDERIRADKSVSVGFVLAAVLWPTLNAMWQRNLNHGQKPVPALMDAMNTM 333
Query: 309 SI 310
Sbjct: 334 RD 335
>gi|322812372|pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I)
Length = 414
Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 69/394 (17%), Positives = 132/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 17 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 192
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + ++ E KLL+A + +F+ +F +
Sbjct: 193 M-RISPETAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 251
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 252 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 311
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 312 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 371
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 372 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 405
>gi|333011530|gb|EGK30944.1| poly(A) polymerase family protein [Shigella flexneri K-272]
Length = 454
Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 69/394 (17%), Positives = 132/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLD 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|240013733|ref|ZP_04720646.1| PcnB [Neisseria gonorrhoeae DGI18]
gi|240115266|ref|ZP_04729328.1| PcnB [Neisseria gonorrhoeae PID18]
gi|240120803|ref|ZP_04733765.1| PcnB [Neisseria gonorrhoeae PID24-1]
gi|268600948|ref|ZP_06135115.1| poly(A) polymerase [Neisseria gonorrhoeae PID18]
gi|268585079|gb|EEZ49755.1| poly(A) polymerase [Neisseria gonorrhoeae PID18]
Length = 452
Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 10/228 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IG+A R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGF-ELSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
++ LK R++ EI KLL + + + + I L
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDIHPL 262
>gi|110804198|ref|YP_687718.1| poly(A) polymerase I [Shigella flexneri 5 str. 8401]
gi|110613746|gb|ABF02413.1| poly(A) polymerase I [Shigella flexneri 5 str. 8401]
Length = 454
Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 69/394 (17%), Positives = 132/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLS 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|330828362|ref|YP_004391314.1| poly(A) polymerase [Aeromonas veronii B565]
gi|328803498|gb|AEB48697.1| Poly(A) polymerase [Aeromonas veronii B565]
Length = 488
Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 18/243 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNKG ++ +VGG VRD L+ + +D DIAT P+++ +FS R
Sbjct: 55 SENALKVLYRLNKGGYEAYLVGGGVRDLLLGKTPKDFDIATDATPEQIKALFSNCRL--- 111
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------------DGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R +G + + D+ R
Sbjct: 112 -IGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDAER 170
Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + + D+ GGL DL R ++ IGD R ED +R+LR RF A
Sbjct: 171 RDFTVNALYYSAKDFTLHDFEGGLEDLAERKLELIGDPETRYREDPVRMLRAVRFAAKLD 230
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + L+ + + R++ E KL A + L + G+F+++F V
Sbjct: 231 M-TISPRTAAPIKELAPLLQDIPAARLFEETLKLFLAGDGLATYKLLREYGLFQQLFPQV 289
Query: 239 QEI 241
+
Sbjct: 290 AAL 292
>gi|293403213|ref|ZP_06647310.1| pcnB [Escherichia coli FVEC1412]
gi|298378747|ref|ZP_06988631.1| poly(A) polymerase [Escherichia coli FVEC1302]
gi|300900821|ref|ZP_07118963.1| polynucleotide adenylyltransferase [Escherichia coli MS 198-1]
gi|331661517|ref|ZP_08362441.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA143]
gi|291430128|gb|EFF03142.1| pcnB [Escherichia coli FVEC1412]
gi|298281081|gb|EFI22582.1| poly(A) polymerase [Escherichia coli FVEC1302]
gi|300355698|gb|EFJ71568.1| polynucleotide adenylyltransferase [Escherichia coli MS 198-1]
gi|331061432|gb|EGI33395.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA143]
Length = 454
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYNLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|325140009|gb|EGC62538.1| poly(A) polymerase [Neisseria meningitidis CU385]
gi|325200477|gb|ADY95932.1| poly(A) polymerase [Neisseria meningitidis H44/76]
Length = 445
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 32 AAENVIRRLKGTGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 87
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 88 GRRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYY 147
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ + IGDA R ED +RILR R G + +
Sbjct: 148 DPEKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-ELSEETAA 206
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I L + +
Sbjct: 207 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHLLLNAL 259
>gi|316984249|gb|EFV63225.1| poly(A) polymerase family protein [Neisseria meningitidis H44/76]
Length = 470
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 32 AAENVIRRLKGTGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 87
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 88 GRRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYY 147
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ + IGDA R ED +RILR R G + +
Sbjct: 148 DPEKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-ELSEETAA 206
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I L + +
Sbjct: 207 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHLLLNAL 259
>gi|313646476|gb|EFS10937.1| poly(A) polymerase family protein [Shigella flexneri 2a str. 2457T]
Length = 437
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 17 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 192
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 193 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 251
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 252 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 311
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 312 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 371
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 372 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 405
>gi|170728128|ref|YP_001762154.1| poly(A) polymerase [Shewanella woodyi ATCC 51908]
gi|169813475|gb|ACA88059.1| poly(A) polymerase [Shewanella woodyi ATCC 51908]
Length = 421
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 71/241 (29%), Positives = 111/241 (46%), Gaps = 16/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + R+F R
Sbjct: 2 SENAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKRLFRNCRL--- 58
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ TLR + + GR + D+ RRD
Sbjct: 59 -VGRRFRLAHIVFGRDVIEVATLRGHHVDNEEKISKTNAEGRLLRDNVYGTIDEDAERRD 117
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D + Y GGL DL +RTI+ IGD + R ED +R+LR RF G
Sbjct: 118 FTVNALYYDISDFSIHSYGGGLEDLHSRTIRMIGDPNTRYREDPVRMLRAVRFATKLGM- 176
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D + + LK + + R++ E+ KL N M + G+F +F V+
Sbjct: 177 TVDEETAAPIYELAPLLKDIPAARMYEEVLKLFFNGQAENNFAMMRDFGLFAPLFPLVET 236
Query: 241 I 241
+
Sbjct: 237 L 237
>gi|239994852|ref|ZP_04715376.1| poly(A) polymerase I [Alteromonas macleodii ATCC 27126]
Length = 439
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 76/400 (19%), Positives = 139/400 (34%), Gaps = 36/400 (9%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + ++ LN +S +VGG VRD LM +D D+ T P+++ +F R
Sbjct: 14 SANALKVMYRLNGAGFESYLVGGCVRDILMGHEPKDFDVVTNATPEQIKGLFRNCRL--- 70
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------------------DGRYAKVVFTRDW 113
+ I+ ++ ++ T R G+ +
Sbjct: 71 -IGRRFRLAHIVFGREIIEVATFRGHHQETDEDENLPKGKAVAKRDAHGQLVRDNVFGTI 129
Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
+ D+ RRDFT NA+Y V D+ GL + R ++ IGD R ED +R+LR R
Sbjct: 130 EEDAERRDFTFNAMYYSVADFTVKDFANGLAAIEKREVELIGDPETRYREDPVRMLRAVR 189
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
F G I++ L+ + R++ E KL + + ++ G+ +
Sbjct: 190 FAVKLGM-RIEAKTAAPIKSLANLLQNIPPARLFEETLKLFLSGKGEETFLMLHEYGLIE 248
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
+F + D+ S+ ++ + D R ++ R
Sbjct: 249 PLFPQLTPFLKDENSREMQFVRRVLANTDE--RINSDQRVTPAFLYAALLWYPVEEESQR 306
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
S N + S I + + + + + L + Q+L
Sbjct: 307 LQSESGLNAHDAFNIASGEVIARQTQRIMIPKRFSTVVRDIWILQQRLPKRFGRRAFQLL 366
Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
P F D ++ G G G++L Q W
Sbjct: 367 ------THPKFRAGYDFLLARGQIEG---GDLL-ELAQWW 396
>gi|269214303|ref|ZP_05986289.2| poly(A) polymerase [Neisseria lactamica ATCC 23970]
gi|269210162|gb|EEZ76617.1| poly(A) polymerase [Neisseria lactamica ATCC 23970]
Length = 469
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 10/228 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 58 AAENVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 113
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K D++RRDFT NALY
Sbjct: 114 GRRFQIVHVMNGAETIEVTTFRGGAKVQQNARGRIMKDNTYGSIGEDAMRRDFTCNALYY 173
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R G + +
Sbjct: 174 DPETEEILDFHNGVADIAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-KLSEETAA 232
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
++ LK R++ EI KLL + + + + L
Sbjct: 233 PIAESICRLKHEPVARLFDEIMKLLFSGHAAACLQVLRRFDCTGIHPL 280
>gi|322812375|pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii)
gi|322812376|pdb|3AQM|B Chain B, Structure Of Bacterial Protein (Form Ii)
Length = 415
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 18 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 74
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 75 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 133
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 134 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 193
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 194 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 252
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 253 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 312
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 313 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 372
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 373 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 406
>gi|312898263|ref|ZP_07757654.1| HD domain protein [Megasphaera micronuciformis F0359]
gi|310620760|gb|EFQ04329.1| HD domain protein [Megasphaera micronuciformis F0359]
Length = 477
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 84/469 (17%), Positives = 166/469 (35%), Gaps = 71/469 (15%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ ILS LN+ ++ IVGGAVRD LM+ D DI T+ P+ ++ K ++ I
Sbjct: 2 TEAVYTILSGLNRAGYEAYIVGGAVRDKLMHKEPHDYDITTSARPEEIVATARKEGWQCI 61
Query: 72 P-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINALY 128
S+G I+ + +++ T R + + + + + + + D RRDFT+NAL
Sbjct: 62 ESVGRSFGVSLILIGGQTYEVATFRDESYGEDSHRPEKIWYAQTLQEDVKRRDFTVNALA 121
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D++G++ DYVGG+ D+ +T++ +GDA R ED LR+ R RF
Sbjct: 122 QDKEGRIYDYVGGVKDISKKTLRAVGDASVRFQEDALRLFRLCRFAGKLDFTVHKETQRA 181
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF------------- 235
++ +K LS+ER+ +EI +LL + + G+
Sbjct: 182 MPTAFER-VKGLSAERVVAEIERLLVTPAAYKGLDILVRSGLGNMTCRRRENGRYTDVPI 240
Query: 236 -LDVQEISLDQLSQVIEAEQVF--------EWKIDSLLRFIVLISW-------------- 272
+ + S + D LR+ L
Sbjct: 241 LPECTHLQYTPQSYPYHVFDAWVHTLAVIAHTPPDLTLRYAALFHDVAKGLEGVRGTKDG 300
Query: 273 ---------QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFYLY 320
++ +++ ++ ++ + LS +++
Sbjct: 301 RYTDYGHERVGADMTAAVLRRWQCNEKLINRVVWLVKTHMQYHALSASPEANVRRWLRRE 360
Query: 321 GDK----------VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
G + + + + ++ + + P+T D+
Sbjct: 361 GTRGDFSRNTDLAEAVRQATVLSVADAKGCRPDSDTTGIESFGEYVQLLVQTLPITTKDL 420
Query: 371 VKYGIPPG-KKV-----GNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
PP K+ G+ L + + + + L+ R+ +
Sbjct: 421 ---NYPPELPKLCGSYTGDCLRVLLKRVQDGALENDSAVLYEASRRWLK 466
>gi|239998610|ref|ZP_04718534.1| PcnB [Neisseria gonorrhoeae 35/02]
gi|240112526|ref|ZP_04727016.1| PcnB [Neisseria gonorrhoeae MS11]
gi|240125359|ref|ZP_04738245.1| PcnB [Neisseria gonorrhoeae SK-92-679]
gi|254493329|ref|ZP_05106500.1| poly(A) polymerase [Neisseria gonorrhoeae 1291]
gi|268594467|ref|ZP_06128634.1| poly(A) polymerase [Neisseria gonorrhoeae 35/02]
gi|268598595|ref|ZP_06132762.1| poly(A) polymerase [Neisseria gonorrhoeae MS11]
gi|268683962|ref|ZP_06150824.1| poly(A) polymerase [Neisseria gonorrhoeae SK-92-679]
gi|226512369|gb|EEH61714.1| poly(A) polymerase [Neisseria gonorrhoeae 1291]
gi|268547856|gb|EEZ43274.1| poly(A) polymerase [Neisseria gonorrhoeae 35/02]
gi|268582726|gb|EEZ47402.1| poly(A) polymerase [Neisseria gonorrhoeae MS11]
gi|268624246|gb|EEZ56646.1| poly(A) polymerase [Neisseria gonorrhoeae SK-92-679]
gi|317163883|gb|ADV07424.1| hypothetical protein NGTW08_0452 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 452
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 10/228 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IG+A R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGF-ELSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
++ LK R++ EI KLL + + + + I L
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDIHPL 262
>gi|197284108|ref|YP_002149980.1| poly(A) polymerase I [Proteus mirabilis HI4320]
gi|194681595|emb|CAR40583.1| poly(A) polymerase [Proteus mirabilis HI4320]
Length = 446
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 76/412 (18%), Positives = 139/412 (33%), Gaps = 47/412 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN ++ +VGG VRD L+ +D DIAT P+ V R+F +R
Sbjct: 17 SDNALKVLYRLNNSGFQAYLVGGGVRDLLLGKKPKDFDIATNATPEEVRRLFRNSRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118
+ I+ + ++ T R G + + D++
Sbjct: 74 -VGRRFRLAHIMFGPEVIEVATFRGSHEDHETSDRNQSQQAQSGMLLRDNIFGSIEEDAI 132
Query: 119 RRDFTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+N+LY + GGL DL++ TI+ IG R ED +R+LR RF +
Sbjct: 133 RRDFTLNSLYYGVDDFAVRDYVGGLADLKSGTIRLIGSPETRYREDPVRMLRAIRFASKL 192
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
I + + L+ + S R++ E KLL+ + M + + + +F
Sbjct: 193 DM-RIAPETAEPISQLAPLLRNIPSARLFEESLKLLQTGHGYKTYRLMRHFQLLEPLFP- 250
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+ A ++ E + + R I + I +
Sbjct: 251 ------------LVASRITEQQDTPMERMIEQVLKNTDYRISKEMRVNPAFLFAAMLWYP 298
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL----- 352
S F + + ++ + + T +D + Q L
Sbjct: 299 LVEHAEKLAQESGLSYYDAFSMAMNDILDEQCRTIAIPKRITTTMRDIWQLQQRLPKRQG 358
Query: 353 -SDIIHWKKPLFPLTGD-DVVKY--GIPPGKKVGNILVHCKQEWINSSFQLS 400
+ P F D+++ + L W + +
Sbjct: 359 RRANKLLEHPKF--RAAFDLLELRANVQRNPD----LEALAAWWADFQISNN 404
>gi|296101313|ref|YP_003611459.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295055772|gb|ADF60510.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 447
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 18/240 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T+ P++V ++F R
Sbjct: 27 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRNCRL--- 83
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 84 -VGRRFRLAHVMFGPEIIEVATFRGHHEAGASDRTTSQRGQNGMLLRDNIFGSIEEDAQR 142
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG R ED +R+LR RF A
Sbjct: 143 RDFTINSLYYSVADFTVRDYVGGMQDLKEGLIRLIGTPETRYREDPVRMLRAVRFAAKLD 202
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + + + R++ E KLL+A + + +F+ +F +
Sbjct: 203 M-RISPETAEPIPRLATLINDVPPARLFEEALKLLQAGHGFATYNLLREYNLFQPLFPSI 261
>gi|157960524|ref|YP_001500558.1| poly(A) polymerase [Shewanella pealeana ATCC 700345]
gi|157845524|gb|ABV86023.1| poly(A) polymerase [Shewanella pealeana ATCC 700345]
Length = 434
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 71/241 (29%), Positives = 108/241 (44%), Gaps = 16/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + R+F R
Sbjct: 14 SENAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKRLFRNCRL--- 70
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ TLR GR + D+ RRD
Sbjct: 71 -VGRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKTNESGRLLRDNVYGSIDEDAERRD 129
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D + Y GGL DL +RTI+ IGD R ED +R+LR RF G
Sbjct: 130 FTVNALYYDISDFSIHSYGGGLQDLESRTIRLIGDPETRYREDPVRMLRAVRFATKLGM- 188
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+ LK + + R++ E+ KL A L M G+F+ +F ++
Sbjct: 189 SIEPKAAEPIQGLAHLLKDIPAARMYEEVLKLFFAGKALENYHMMREFGLFEPLFPQLEA 248
Query: 241 I 241
+
Sbjct: 249 L 249
>gi|261338862|ref|ZP_05966720.1| hypothetical protein ENTCAN_05058 [Enterobacter cancerogenus ATCC
35316]
gi|288318685|gb|EFC57623.1| polyA polymerase [Enterobacter cancerogenus ATCC 35316]
Length = 447
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 18/240 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T+ P++V ++F R
Sbjct: 27 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRNCRL--- 83
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 84 -VGRRFRLAHVMFGPEIIEVATFRGHHEASAADRTTSQRGQNGMLLRDNIFGSIEEDAQR 142
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG R ED +R+LR RF A
Sbjct: 143 RDFTINSLYYSVADFTVRDYVGGMQDLKDGLIRLIGTPETRYREDPVRMLRAVRFAAKLN 202
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + + + R++ E KLL+A + +F+ +F +
Sbjct: 203 M-RISPETAEPIPRLATLINDVPPARLFEEALKLLQAGYGFETYNLLREYSLFQPLFPTI 261
>gi|240080315|ref|ZP_04724858.1| PcnB [Neisseria gonorrhoeae FA19]
gi|240123108|ref|ZP_04736064.1| PcnB [Neisseria gonorrhoeae PID332]
gi|240127811|ref|ZP_04740472.1| PcnB [Neisseria gonorrhoeae SK-93-1035]
gi|268596463|ref|ZP_06130630.1| poly(A) polymerase [Neisseria gonorrhoeae FA19]
gi|268681735|ref|ZP_06148597.1| poly(A) polymerase [Neisseria gonorrhoeae PID332]
gi|268686207|ref|ZP_06153069.1| poly(A) polymerase [Neisseria gonorrhoeae SK-93-1035]
gi|268550251|gb|EEZ45270.1| poly(A) polymerase [Neisseria gonorrhoeae FA19]
gi|268622019|gb|EEZ54419.1| poly(A) polymerase [Neisseria gonorrhoeae PID332]
gi|268626491|gb|EEZ58891.1| poly(A) polymerase [Neisseria gonorrhoeae SK-93-1035]
Length = 452
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 10/228 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IG+A R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGF-ELSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
++ LK R++ EI KLL + + + + I L
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDIHPL 262
>gi|317485556|ref|ZP_07944433.1| poly A polymerase head domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316923236|gb|EFV44445.1| poly A polymerase head domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 601
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 151/432 (34%), Gaps = 39/432 (9%)
Query: 16 INILSLLNKGED-------KSCIVGGAVRDSLMNLSV---QDIDIATTILPDRVMRIFSK 65
++L +L++ + VGG VRD +++ D+D+ R ++
Sbjct: 156 QHMLHMLHRAGELGDRLQVSVYAVGGFVRDIMLSRPAVEFDDVDLVVEGDGIAFARALAQ 215
Query: 66 TRYKVIPTSISYGTIKIICRKKYFD-----ITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ ++ T II + + + T R + V K D RR
Sbjct: 216 ELGGRVREHRTFMTALIIYHDENGEEQRLDVATARLEYYKYPAALPTVELSSIKMDLFRR 275
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYG 178
DFTINA+ + ++ + +ED RI+R RF YG
Sbjct: 276 DFTINAMALRLNKGQFGCLVDFFGGQSDIQRKTIRIIHALSFVEDPTRIIRAVRFEQRYG 335
Query: 179 EKNIDSDGLVASIKAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+ ++ LS RI E+N + P + + G+ I
Sbjct: 336 FHISTQGEKLIKNALSLNLVEKLSGARILHELNLIFREDEPETCLRRLNELGVLAAIHPS 395
Query: 238 V-----QEISLDQLSQVIEAEQVFEWKIDS---LLRFIVLISWQDKKSILSMAKKFSLPR 289
+ + LD L +VI+ ++ +K L + L S + + L
Sbjct: 396 LVLNADKNELLDSLREVIDWYRLLYFKETPELSTLYLMALCSAVPAIETADILHRLGLTP 455
Query: 290 EIRYFLISFFN---------CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+R ++S N+++ T + ++ + L+ L L +
Sbjct: 456 TMREEILSLRESVRMTLVELINWHRDTQKKGQAEQSVSRLCALLAPLPLESTLYLMARSD 515
Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400
+ + + Q I W++ + GDD+ + G+ PG + G+++ ++ +
Sbjct: 516 NEEISSSVSQ---YIYKWRQIKVDINGDDLHRLGLEPGPQFGSVMRMVLAAKLDGKAETR 572
Query: 401 QEDLHHLLRKLI 412
+ L L +LI
Sbjct: 573 EAQL-KLAEELI 583
>gi|283782575|ref|YP_003373329.1| tRNA adenylyltransferase [Gardnerella vaginalis 409-05]
gi|298253265|ref|ZP_06977057.1| tRNA nucleotidyltransferase/poly(A) polymerase [Gardnerella
vaginalis 5-1]
gi|283441848|gb|ADB14314.1| tRNA adenylyltransferase [Gardnerella vaginalis 409-05]
gi|297532660|gb|EFH71546.1| tRNA nucleotidyltransferase/poly(A) polymerase [Gardnerella
vaginalis 5-1]
Length = 475
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 84/467 (17%), Positives = 160/467 (34%), Gaps = 67/467 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71
+ I + L + + +VGG VRD L++ D+D T+ P+ I +
Sbjct: 9 PEAIELGRLFAERHYELALVGGPVRDMLLHRVSHDLDFCTSARPEEFEPILRRWGHDGFW 68
Query: 72 PTSISYGTIKIICR-----KKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTIN 125
+GT+ + R + +ITT RSD D R +V + + D RRDFT+N
Sbjct: 69 DMGRKFGTLGAMRRRADGTEVKVEITTYRSDVYDPDSRKPEVQYGDTLEGDLSRRDFTVN 128
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+ + +D GG +DL ++ D +D LR++R RF A G +I++
Sbjct: 129 AMALRVPDLQFVDPFGGASDLAKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGF-SIEA 187
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A + L I+S+ERI EI K+L + P + + GI + + ++ + L+
Sbjct: 188 NTAEAIVDMADRLDIVSAERIRDEITKMLLSDRPRKGLEALVESGIAQRVLPEIPALQLE 247
Query: 245 QLSQVIEAEQVFEW--------------------KIDSLLRFIVLISWQDKK-------- 276
+ + + VFE D LR L+ K
Sbjct: 248 -IDEHHRHKDVFEHTMMVLERAIALETDQEGPVPSPDLTLRLAALLHDIGKPKTRKFEDG 306
Query: 277 --------------SILSMAKKFSLPREIRYFLISFFNCNFNQKTL-SIPEIKKLFYLYG 321
K + + N + P Y
Sbjct: 307 GKVSFHHHDVVGAKMTRKRLKALHFDHHLIEDVTELVNLHLRFHGYVDEPWTDSAVRRYV 366
Query: 322 DK--VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDD 369
+ +L + + + ++ + + G++
Sbjct: 367 KDSGHLYERLNRLTRADATTQNRRKSLMFEHAMDEMEERVKELKKQEDFNAIRPDVDGNE 426
Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+++ + PG VG H +++ + + L++ +
Sbjct: 427 IMQLLHLQPGPTVGEAYKHMLDYRLDNG-PVDHDIAVEELQRWYEET 472
>gi|323975694|gb|EGB70790.1| poly(A) polymerase [Escherichia coli TW10509]
Length = 454
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 18/240 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLD 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268
>gi|194336308|ref|YP_002018102.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pelodictyon phaeoclathratiforme BU-1]
gi|194308785|gb|ACF43485.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pelodictyon phaeoclathratiforme BU-1]
Length = 479
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 86/466 (18%), Positives = 160/466 (34%), Gaps = 60/466 (12%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M + Q L I + ++ +VGG VRD +M + DIDI T P
Sbjct: 1 MTTDSQA--LLPEILYRIGDMADENGIGCYLVGGYVRDMIMQRACTDIDIMVTGDPLPFA 58
Query: 61 RIFS-KTRYKVIPTSISYGTIKI-----ICRKKYFDITTLRSDLITDGRYAKVVFTRDWK 114
+ K + + T ++ I ++ R + + V
Sbjct: 59 KAVRDKLNGRNFILFERFRTAQLELSDPIQGSFKVELVGARKESYNNDSRKPVTLIGTLD 118
Query: 115 ADSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170
D RRDFTINAL ++ID G+ D+ R +K D +D LR++R
Sbjct: 119 DDLSRRDFTINALALVLNSKERNQIIDRFNGVADIEARILKTPLDPLQTFSDDPLRMMRA 178
Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230
RF A + + + ++I+S ER+ E K++ + P ++ +Y G+
Sbjct: 179 ARFSAQLDFRLLPDVVEAMK-AMHERIRIVSIERVSQEFFKIMLSPRPSRGLIILYETGL 237
Query: 231 FKEIFLDVQEISLDQ-----------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279
+EI +V ++ + + V + LR L+ K +
Sbjct: 238 LQEILPEVASMAGIEQVDGLGHKDTLFHTFQVIDNVAAHSGNLWLRVAALLHDIAKPATK 297
Query: 280 SMAKK----------------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
AK P + ++ + LS EI
Sbjct: 298 RFAKHVGWTFHGHDAIGPKIVAKIFRQMRWPLDPLDYVQKMVRLHHRPIPLSKEEITDSA 357
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFP 364
L+ + L ++T ++ + +++S+ H ++ P
Sbjct: 358 IRRLMFDAGEDLQDLMHLCRADVTSKNPRKVSRIMSNFNHVEEKISEVGEKDQLAKWRPP 417
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
++G+D++ G+ GK VG I + I+ + +R
Sbjct: 418 ISGEDIMATLGLTEGKMVGMIKKRMENAVIDGLIAYDRNTALDYIR 463
>gi|260440917|ref|ZP_05794733.1| PcnB [Neisseria gonorrhoeae DGI2]
gi|291044239|ref|ZP_06569948.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Neisseria gonorrhoeae
DGI2]
gi|291011133|gb|EFE03129.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Neisseria gonorrhoeae
DGI2]
Length = 477
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 10/228 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IG+A R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGF-ELSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
++ LK R++ EI KLL + + + + I L
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDIHPL 262
>gi|260596566|ref|YP_003209137.1| poly(A) polymerase I [Cronobacter turicensis z3032]
gi|260215743|emb|CBA28132.1| Poly(A) polymerase [Cronobacter turicensis z3032]
Length = 479
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 73/393 (18%), Positives = 128/393 (32%), Gaps = 48/393 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 58 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 114
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 115 -VGRRFRLAHVMFGPEIIEVATFRGHHEESESDRATSQRGQNGMLLRDNIFGSIEEDAQR 173
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGGLNDL I+ IGD R ED +R+LR RF A
Sbjct: 174 RDFTINSLYYSVADFTVRDYVGGLNDLNEGIIRLIGDPETRYREDPVRMLRAVRFAARLD 233
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 234 M-RISPETGEPIPRLATLLNDVPPARLFEESLKLLQAGYGYATYRLLCEYNLFQPLFPGI 292
Query: 239 ------------QEISLDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDKKS-------- 277
+ I L L + +
Sbjct: 293 SRYFTEKGDSPMERIIAQVLKNTDHRIHNDMRVNPAFLFAAMFWYPQLEMAQKIAQESGL 352
Query: 278 ---------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ + + I + + + + K + +
Sbjct: 353 AYYDAFALAMNDVLDEACRSLAIPKRITTLIRDIWMLQLRLSRRQGKRAWKLMEHPKFRA 412
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
LAL ++ + + + P
Sbjct: 413 AYDLLALRAEAESNSELQRLTNWWGEFQSAAPP 445
>gi|268591287|ref|ZP_06125508.1| hypothetical protein PROVRETT_07561 [Providencia rettgeri DSM 1131]
gi|291313263|gb|EFE53716.1| polyA polymerase [Providencia rettgeri DSM 1131]
Length = 539
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 75/367 (20%), Positives = 140/367 (38%), Gaps = 27/367 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T P+++ ++F R
Sbjct: 116 SDNALKVLYRLNKSGFEAYLVGGGVRDLLLGQKPKDFDITTNATPEQIRKLFRNCRL--- 172
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI-------------TDGRYAKVVFTRDWKADSL 118
+ I+ + ++ T R +G + + D++
Sbjct: 173 -VGRRFRLAHIMFGPEIIEVATFRGHHDQNVSDDKNLSAQAQNGMLLRDNIFGSIEEDAI 231
Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+N+LY + + DYV GL DL+ I+ IGD R ED +R+LR RF
Sbjct: 232 RRDFTVNSLYYNIEDFTLRDYVNGLKDLKAGVIRLIGDPETRYREDPVRMLRAVRFACKL 291
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL- 236
+I+ + L+ + S R++ E KLL+A + G+F+++F
Sbjct: 292 NM-SIEPKTAEPIYQLAHLLREIPSARLFEESLKLLQAGQGYATYKMLKKYGLFEQLFPV 350
Query: 237 ------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
D + ++++ + + F K D + L + + A+K S
Sbjct: 351 VASRFTDNSDSPMEKIIEQVLKNTDFRLKNDKRVNPAFLFAVMLWYPVTEHAEKLSQEGG 410
Query: 291 IRYFLISFFNCN-FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
+ Y+ N + I K + + +L++ +
Sbjct: 411 LAYYDAFALAMNDILDEQCRSIAIPKRITTTMRDIWLLQLRLPRRQGRRANKLMEHPKFR 470
Query: 350 QVLSDII 356
+
Sbjct: 471 AAFDLLE 477
>gi|227872944|ref|ZP_03991244.1| possible tRNA adenylyltransferase [Oribacterium sinus F0268]
gi|227841196|gb|EEJ51526.1| possible tRNA adenylyltransferase [Oribacterium sinus F0268]
Length = 191
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/184 (32%), Positives = 90/184 (48%), Gaps = 22/184 (11%)
Query: 6 QHKWFHDSDLINI---------LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILP 56
+ KW D I I + + + ++ VGG VRD+L+ +D DI T+ P
Sbjct: 12 KGKWMKDPKAIQITVPKGVEHIIRQIEQAGYEAYAVGGCVRDALLGREPEDWDITTSAKP 71
Query: 57 DRVMRIFSKTRYKVIPTSISYGTIKIIC-------RKKYFDITTLRSD-LITDGRYAK-V 107
+ V +F + I T I +GT+ ++ + F++TT R D + DGR+ K V
Sbjct: 72 EVVKSLF----LRTIDTGIEHGTVTVLLSPQEAGEGDRAFEVTTYRVDGIYEDGRHPKAV 127
Query: 108 VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167
FT + D RRDFTINA+ +ID G DL N+ ++ +G A R ED LR+
Sbjct: 128 SFTGSLEEDLARRDFTINAMAYHMDRGIIDCYHGQEDLENKRVRTVGRAEERFTEDALRM 187
Query: 168 LRFF 171
+R
Sbjct: 188 MRGI 191
>gi|193215015|ref|YP_001996214.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Chloroherpeton thalassium ATCC 35110]
gi|193088492|gb|ACF13767.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Chloroherpeton thalassium ATCC 35110]
Length = 477
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 79/450 (17%), Positives = 150/450 (33%), Gaps = 58/450 (12%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTS 74
I +L ++ + VGG VRDSL+ +DIDI P + K
Sbjct: 18 RKIGALADEMQLPCYAVGGFVRDSLLQRKCKDIDIMVVGEPIAFAKAAKTKLNGFGFAVF 77
Query: 75 ISYGTIKIICRKKYF-----DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ T ++ + + + R + + + + D RRDFTINAL
Sbjct: 78 ERFRTARLSLKDREMGEIELEFVGARKESYSPESRKPITEVGTLQDDLSRRDFTINALAV 137
Query: 130 DQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
K+ D G NDL + ++ + +D LR++R RF + N++ +
Sbjct: 138 SLNQATFGKLTDLFNGRNDLSAQLLRTPLEPESTFSDDPLRMMRAARFASQLNF-NLEPE 196
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE----- 240
VA + + I+S ER+ E+ K++ + P + +Y G+ KEI ++
Sbjct: 197 IFVAMQNMHRRIGIVSKERVRDELFKIMASPKPSVGLDILYKTGVLKEILPELTAMAGVE 256
Query: 241 ------ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL------- 287
+ + + E LR L K +
Sbjct: 257 QIDGVGHKDTFYHTLKVVDNISEMSEKFWLRMAALFHDVGKPKTKRFKEGHGWTFHGHDA 316
Query: 288 ---------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
P + ++ + LS EI +L
Sbjct: 317 VGAAMMQRIFRKQKFPLDHLEYVQKLIRLHLRPIPLSGEEITDSAIRRLMFEAGEELDDL 376
Query: 333 LALHYNNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVKY-GIPPG 378
+ L ++T ++ + +++S+ K P+ G ++++ + G
Sbjct: 377 MMLCRADVTSKNPQKVEKIMSNFLLVEEKVSQVCEKDLLAKWRPPINGVEIMEMFNLSEG 436
Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K VG + + I+ +E L
Sbjct: 437 KIVGLLKKSMENAIIDGVIPYDKEAAMRFL 466
>gi|88858370|ref|ZP_01133012.1| poly(A) polymerase I [Pseudoalteromonas tunicata D2]
gi|88819987|gb|EAR29800.1| poly(A) polymerase I [Pseudoalteromonas tunicata D2]
Length = 457
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 72/395 (18%), Positives = 142/395 (35%), Gaps = 29/395 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ I +L L G + +VGG +RD L+ ++ +D D+ T P++V R+F R
Sbjct: 29 FSPNAIKVLYRLKDGGYDAYLVGGCIRDVLLGVTPKDFDVVTNATPEQVKRLFRNCRI-- 86
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSL 118
+ I+ ++ ++ T+R T+G+ + D+
Sbjct: 87 --IGRRFRLAHIVFGREIIEVATMRGHHEGSEDKNPISQSSTEGQLLRDNVFGSIDEDAE 144
Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDF+INALY + DY G++ +++R I+ IG R ED +R+LR RF
Sbjct: 145 RRDFSINALYYSINDYSIHDYANGMDAIKHRRIELIGHPETRYREDPVRMLRAIRFATKL 204
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
I D + L + + R++ E+ KL V + G+FK++F
Sbjct: 205 DM-TIAPDTEKPIYELADLLSNIPAARLFEEVLKLFLNGKAEQNFVALRQYGLFKQLFPA 263
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+ ++ ++Q E + + + I++ R ++ + R + +
Sbjct: 264 L-DLIIEQSKTGEELKLITQMFINTDTRINADKKVTPAFVFAALLWYPMVQRAEQLIKET 322
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
+ + + + + L + ++
Sbjct: 323 KLDEYEAYTQAGNEVVAQNAQHIAVPKHFTQGSREIWQIQLRLPKRGGQRAYRLAQQPRF 382
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
F +++ I PG L W
Sbjct: 383 RAAYDFL-----LLRTQITPGP-----LQELANWW 407
>gi|261345791|ref|ZP_05973435.1| polyA polymerase [Providencia rustigianii DSM 4541]
gi|282566280|gb|EFB71815.1| polyA polymerase [Providencia rustigianii DSM 4541]
Length = 529
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 72/366 (19%), Positives = 141/366 (38%), Gaps = 26/366 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ L +D DI T P+++ ++F R
Sbjct: 107 SDNALKVLYRLNKNGYEAYLVGGGVRDLLLGLKPKDFDITTNATPEQIRKLFRNCRL--- 163
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R +G + + D++R
Sbjct: 164 -VGRRFRLAHIMFGPEIIEVATFRGHHDQEVDDKNLSSQAQNGMLLRDNIFGSIEDDAIR 222
Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+N+LY + V DYV GL DL++ I+ IGD R ED +R++R RF
Sbjct: 223 RDFTVNSLYYNIDDFSVRDYVNGLQDLKDGVIRLIGDPETRYREDPVRMIRAVRFACKLN 282
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-- 236
I+ + + L + S R++ E KLL++ + + +F+++F
Sbjct: 283 M-RIEPNTAEPIPRLAPLLGEIPSARLFEESLKLLQSGYGYSTYKMLRQYHLFEQLFPVI 341
Query: 237 -----DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291
+ + ++++ + + F K D + L + + A+K + +
Sbjct: 342 ADRFTENNDSPMEKIIEQVLKNTDFRLKNDKRVNPAFLFAAMLWYPVTEHAEKLTQEGGL 401
Query: 292 RYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
Y+ N + I K + + +L++ +
Sbjct: 402 AYYDAFALAMNDVLDEQCRSIAIPKRITTTMRDIWMLQLRLPRRQGRRANKLMEHPKFRA 461
Query: 351 VLSDII 356
+
Sbjct: 462 AFDLLE 467
>gi|56461352|ref|YP_156633.1| Poly(A) polymerase [Idiomarina loihiensis L2TR]
gi|56180362|gb|AAV83084.1| Poly(A) polymerase [Idiomarina loihiensis L2TR]
Length = 462
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 56/267 (20%), Positives = 110/267 (41%), Gaps = 22/267 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ I +L L+ ++ +VGG +RD L+ L +D D+ T P+++ +F R
Sbjct: 37 SKNAIKVLYRLHNSGFEAYLVGGCIRDILLGLEPKDFDVTTNATPEQIKSLFRNCRL--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------------ITDGRYAKVVFTRDWKA 115
+ ++ K+ ++ T R G+ + +
Sbjct: 94 -IGRRFRLAHVVFGKEVIEVATFRGHHGASPQEENKKNRTADQDEHGQLVRDNVYGSIEE 152
Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
D+ RRDFT NALY + + D+ G++D+ ++ IGD R ED +R+LR RF
Sbjct: 153 DAERRDFTANALYYNIADFAIYDFANGVDDINAGILRMIGDPEVRYREDPVRMLRAVRFA 212
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
+ +D+ + L + R++ E K+ + + M + G+F+++
Sbjct: 213 TKLNMQ-MDNSVSGPLKELAPLLINIPPARLFDEFLKMFMSGKAEANFLMMKDFGLFQQL 271
Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKID 261
F +++ D+ S + D
Sbjct: 272 FPMLKDYVADEQSPAYQMMLKAFKDTD 298
>gi|307546716|ref|YP_003899195.1| poly(A) polymerase [Halomonas elongata DSM 2581]
gi|307218740|emb|CBV44010.1| poly(A) polymerase [Halomonas elongata DSM 2581]
Length = 488
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 17/242 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +L L+ ++ +VGG +RD+L+ +D D+AT PD V +F +R
Sbjct: 68 FSDAALKVLYRLHNAGFEAFLVGGCIRDALLGRMPKDFDVATDATPDEVRDLFRNSRI-- 125
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR-----------DWKADSLR 119
+ + + ++ ++TT R D + + + D+LR
Sbjct: 126 --IGRRFRIVHVRFGREVIEVTTFRGKPNDDHGDHIAQQSDDGMLLRDNVWGNIEEDALR 183
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINALY + + D+ G D+ RT++ IGD R ED +R+LR RF A
Sbjct: 184 RDFTINALYYNIADFSIHDFADGARDIDARTLRLIGDPATRYREDPVRMLRAIRFAAKLD 243
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + L + R++ E+ KL A + + + G+F +F +
Sbjct: 244 F-SLARATEEPIEELAPLLLQVPPARLFDEVLKLFMAGHGVETFQLLREYGLFAMLFPEA 302
Query: 239 QE 240
E
Sbjct: 303 DE 304
>gi|170768603|ref|ZP_02903056.1| poly(A) polymerase [Escherichia albertii TW07627]
gi|170122707|gb|EDS91638.1| poly(A) polymerase [Escherichia albertii TW07627]
Length = 454
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 18/240 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKL- 208
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 209 HMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268
>gi|154486329|ref|ZP_02027736.1| hypothetical protein BIFADO_00138 [Bifidobacterium adolescentis
L2-32]
gi|154084192|gb|EDN83237.1| hypothetical protein BIFADO_00138 [Bifidobacterium adolescentis
L2-32]
Length = 458
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 84/458 (18%), Positives = 157/458 (34%), Gaps = 67/458 (14%)
Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVIPTSISYGT 79
+ + +VGG VRD L++ D+D T+ P++ I + +GT
Sbjct: 1 MFAAEGYELALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGHDGFWDMGRKFGT 60
Query: 80 IKIICRKK-----YFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132
+ + R++ ++TT RSD R +V + + D RRDFT+NA+ +
Sbjct: 61 LGAMRRREDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPE 120
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ +D GG NDL ++ D +D LR++R RF A G I+ + A
Sbjct: 121 LEFVDPFGGANDLAKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGF-RIEPETAEALSD 179
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
++I+S+ER+ E+ KLL + P I + + G+ + ++ + L+ + +
Sbjct: 180 MVDRIEIVSAERVRDELVKLLLSDRPRAGIEALVDSGLADIVLPEIPALQLE-IDEHHRH 238
Query: 253 EQVFEWK--------------------IDSLLRFIVLISWQDKK---------------- 276
+ VFE D LR L+ K
Sbjct: 239 KDVFEHTMIVIERAVALETGPDGPVPAPDLTLRLAALLHDIGKPKTRRFEAGGKVSFHRH 298
Query: 277 ------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330
K + + N + K +
Sbjct: 299 DAVGAKMTRKRLKALHFDHHMVEDVSELVNLHLRFHGYVEEPWTDSAVRRYVKDAGPLYE 358
Query: 331 IFLALHYNNLTHQDTCF-------------ILQVLSDIIHWKKPLFPLTGDDVVK-YGIP 376
L + T Q+ ++ L + + L GD++++ I
Sbjct: 359 RLNRLTRADTTTQNKRKAMMFSAAMDEMEQRVRDLKEKEDFDAIRPDLNGDEIMQLLSIE 418
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
PG VG H + +++ + ++ L +
Sbjct: 419 PGPMVGKAYKHMLEYRLDNG-PVERDVAVAELERWYKE 455
>gi|75907929|ref|YP_322225.1| RecJ-like protein phosphoesterase [Anabaena variabilis ATCC 29413]
gi|75701654|gb|ABA21330.1| Phosphoesterase, RecJ-like protein [Anabaena variabilis ATCC 29413]
Length = 904
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 73/433 (16%), Positives = 143/433 (33%), Gaps = 50/433 (11%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLS------VQDIDIATTIL--------PDRVMRIFSK 65
+ +VGGAVRD L+ + + DID+ + + +
Sbjct: 479 QAAEERGWHLYLVGGAVRDLLLAEAAAGTLMITDIDLVVDGFHKSADVGAGVELAKALQE 538
Query: 66 TR-YKVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
+ ++ T ++ K + DI T R++ V + D
Sbjct: 539 IYPAARLEIHGAFQTAALLWHKDPELDSLWVDIATARTEFYPYPAANPEVEASSIRQDLY 598
Query: 119 RRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
RRDFTINAL + G ++D+ GGL DL+ + I+ + + +ED RI R RF
Sbjct: 599 RRDFTINALALRLTSPRAGDLLDFFGGLLDLKAKQIRVLHA--NSFIEDPTRIYRGVRFA 656
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWS----------EINKLLEAKNPLNAIVH 224
+G G+ +++ E+ +LEA +A+
Sbjct: 657 VRFGFAIEPRTEEYIRYAINSGVYDRTAQNNTKTPALQTRLKTELKHILEAPYWRSALQL 716
Query: 225 MYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEWKIDSLLRFI----VLISWQDKKSI 278
+ + G I + S + QL + + F+ + + + + ++
Sbjct: 717 LDDLGALHCIHPTLSLNSELIHQLRLLERCLRRFDPQQNLIPWQMRLEAIIAHLAPMYRG 776
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
I++ ++LS + K + L +
Sbjct: 777 KVAKNLQLQEDSIQHLQNLAVAQAEIVQSLSEYQRPSQVVQLLRKYNLEILILIALQSQR 836
Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398
+ Q+ + W L G+D+ K G PG + +L + ++ +
Sbjct: 837 PIR-------RQIWQYLTVWANVQPILNGNDLKKLGYKPGPQYRQMLDDLLAKTLDGNIT 889
Query: 399 LSQEDLHHLLRKL 411
E L ++
Sbjct: 890 NQVEAQEFLAQQY 902
>gi|149917655|ref|ZP_01906151.1| poly(A) polymerase [Plesiocystis pacifica SIR-1]
gi|149821437|gb|EDM80837.1| poly(A) polymerase [Plesiocystis pacifica SIR-1]
Length = 486
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 63/251 (25%), Positives = 109/251 (43%), Gaps = 25/251 (9%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D D + ++ L ++ +VGG VRD +N +D D+AT+ P+++ R+F +R
Sbjct: 37 DKDALKVVRKLLAANHEAYLVGGCVRDLYLNRKPKDFDVATSARPEQIRRVFRNSRI--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYA-------------------KVVFTRD 112
+ + K + +T R++ + A D
Sbjct: 94 -IGRRFKLAHVFFGSKIIETSTFRTNPKEEEHAATSEGDAAAEGGGGGDLLITHDNSWGD 152
Query: 113 WKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171
K D+ RRDFTIN L+ D + + I D+V G+ DL I+ IG+ R ED +R++R
Sbjct: 153 IKDDARRRDFTINGLFYDIERRAIVDFVDGVRDLDRGIIRTIGEPEVRFREDPVRMIRAI 212
Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231
+F A ++ D A ++ + S R+ E+ KLL + A M +F
Sbjct: 213 KFAARLDF-TVEMDSWQALLRCAPDIARCSRARLVEELYKLLRGGSSRRAFELMIQAELF 271
Query: 232 KEIFLDVQEIS 242
+ I+ D +
Sbjct: 272 QHIWPDYIALY 282
>gi|269798577|ref|YP_003312477.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Veillonella parvula DSM 2008]
gi|269095206|gb|ACZ25197.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Veillonella parvula DSM 2008]
Length = 472
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 90/460 (19%), Positives = 158/460 (34%), Gaps = 72/460 (15%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + +
Sbjct: 3 EQANRILTILEEAGHEAYIIGGAVRDILMHQKPHDFDIVTSARPDTVIEVLRSHDIQTTD 62
Query: 73 -TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYA 129
S+G + K ++I T R++ + T + D LRRDFT+N +
Sbjct: 63 LVGKSFGVVVATLEGKQYEIATYRTERYGADSHRPEEITYADTLEEDVLRRDFTVNGMAM 122
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
++ G+VID VGG D++++T++ IG+A R ED LR+ R RF A + L A
Sbjct: 123 NRYGEVIDLVGGRRDIKHKTLRTIGNAQERFEEDALRLFRACRFVAKLDFLP-SKELLEA 181
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE------ISL 243
KA + LS ER+ SEIN+L+ + + + + V+ L
Sbjct: 182 MPKAFHRVPGLSLERVRSEINRLMLEPAVAKGLDVLVQSRLAECSCRVVENGVAREVPIL 241
Query: 244 DQLSQVIEAEQ----------------VFEWKIDSLLRFIVLISW--------------- 272
+L ++ Q V + D +LR+ L+
Sbjct: 242 PELYHLVNLPQEKDFHEFDGWYHTLAVVSHTEPDLVLRWGALLHDVAKGMPAVRAVINGR 301
Query: 273 --------QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK- 323
+ ++ + P+ + + +
Sbjct: 302 LTDRGHDTLGAEMTETLLTRLGYPKAFVQRVAWIVKNHMRFHYFVQNGDANEKKWLRKEA 361
Query: 324 -------------VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
K+ A + + + P+ D+
Sbjct: 362 RSGEFRDSQIMRTAWEQLAKVCAADVLGCGKPYSSTDGTLAFGECMADLSLEMPVHTKDL 421
Query: 371 ------VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
+K GK+VG L + + N + L
Sbjct: 422 NYDERVIKL---AGKQVGEGLQYLLGQVQNGVVPNEPDAL 458
>gi|87127876|gb|ABD22390.1| polyA polymerase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202749|gb|ABD30559.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
Length = 366
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 72/385 (18%), Positives = 146/385 (37%), Gaps = 32/385 (8%)
Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR--SDL 98
M ++ DIDI T+ PD + IFS IP +GTI ++ + +++TT R D
Sbjct: 1 MGRNIHDIDITTSATPDEIESIFSH----TIPVGKEHGTINVVFNDENYEVTTFRAEEDY 56
Query: 99 ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHH 158
+ R + V F RD D RRDFT+NA+ D K+ DY G D+ NR I+ +G A
Sbjct: 57 VDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRIIRTVGIAEE 116
Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-----KILSSERIWSEINKLL 213
R ED LR++R RF + I+ +I+ +
Sbjct: 117 RFQEDALRMIRCLRFQSQLSFDIATETFEAMRIQMADIKFLSIERIVIELTKLMRGINVE 176
Query: 214 EAKNPLNAIVHMYNGGIFKEIFLD----VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVL 269
++ N L ++ F+ + ++ + I L+ L ++ + + + L
Sbjct: 177 KSFNHLKSLKAFNYMPYFEHLDMNQINVTEAIDLELLIAIVSVKFDINYSLKPLKLSNRQ 236
Query: 270 ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
+ ++ + A + +E + ++ + + + ++ K + G + +I L
Sbjct: 237 VKDINQYIQIMNALPSIITKEQLKMFVYDYDTHLIKNVMVAADVLKANDIQGHEPLIVNL 296
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHC 388
I + L + + + G ++ G + ++L
Sbjct: 297 ----------------QTIDETLHRLPMHNRKDMMVNGGVLMAHLNAKSGPWLKDVLRQI 340
Query: 389 KQEWINSSFQLSQEDLHHLLRKLIA 413
+ + + ++ + +
Sbjct: 341 EIAIVTGKVSNEETEILKWVDNHVK 365
>gi|86606513|ref|YP_475276.1| polyA polymerase family protein [Synechococcus sp. JA-3-3Ab]
gi|86555055|gb|ABD00013.1| polyA polymerase family protein [Synechococcus sp. JA-3-3Ab]
Length = 903
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 79/438 (18%), Positives = 145/438 (33%), Gaps = 47/438 (10%)
Query: 12 DSDLINILS----LLNKGEDKSCIVGGAVRDSLMNL---------SVQDIDIATTI---- 54
+L + ++ + +VGGAVRD L++ D+D+
Sbjct: 464 SPQHRRLLEEAARIADEKGLRLYLVGGAVRDLLLHRWGRQPSSCLERLDLDLVVDGPYPS 523
Query: 55 -------------LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK-KYFDITTLRSDLIT 100
L + + F + R + T +I DI + R++
Sbjct: 524 TPQGTDPPGWGLILGKALKQHFPEARL---EIHGKFQTAALIWPGGFCVDIASARTEFYP 580
Query: 101 DGRYAKVVFTRDWKADSLRRDFTINALYADQQG----KVIDYVGGLNDLRNRTIKFIGDA 156
V D RRDF+INAL G +++D+ GG DL+ I+ +
Sbjct: 581 YPASPPEVAMGSIHQDLYRRDFSINALALRLNGPQRGQLLDFFGGQADLQKGIIRALHP- 639
Query: 157 HHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215
+ +ED RI R RF H G + ++ + + A + ER+ E+ +L +
Sbjct: 640 -NSFIEDPTRIYRAVRFAVHLGFALDPTTEEWIRTAVASGLHDAVGGERLKQELAYILRS 698
Query: 216 KNPLNAIVHMYNGGIFKEIFLDV-QEISL-DQLSQVIEAEQVFEWKIDSLLRFIVLISWQ 273
++ A + G + I + + SL +L +V F + L +
Sbjct: 699 RDWPLAFERLAAWGALRCIHPALTWDPSLYRRLQRVGRWAYHFRRRYPELGSQEIWQLRL 758
Query: 274 DKKSILSMAKKFSLPR-EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
+ + + + I + + + L ++ L+I
Sbjct: 759 EALLLPLPQAPQVASQLHLTQAGIERLSHFSHYQALLAQLETGSLSPAQVVRLLQGLRIP 818
Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
+ L + + + + W PL G D+ G PG IL +
Sbjct: 819 AVILLAGLAAKPARRL--LWRYLQEWHWVKPPLNGHDLRCLGYKPGPLFQEILERLRCLT 876
Query: 393 INSSFQLSQEDLHHLLRK 410
+N E LRK
Sbjct: 877 LNGELTTRAEA-EAWLRK 893
>gi|319944457|ref|ZP_08018731.1| poly(A) polymerase [Lautropia mirabilis ATCC 51599]
gi|319742418|gb|EFV94831.1| poly(A) polymerase [Lautropia mirabilis ATCC 51599]
Length = 488
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 11/236 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
S + L + IVGG VRD L+ + +D D+AT P+ V +F + R
Sbjct: 66 SSAALRTCEELQHAGYSAYIVGGGVRDLLLGRAPKDFDVATDASPEAVQSLFRRARI--- 122
Query: 72 PTSISYGTIKIICRKKYFDITTLR-----SDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + ++ ++ ++TT R GR + D+ RRDFT+NA
Sbjct: 123 -IGRRFRIVHVMFGRETIEVTTFRAAHTNGQTDAHGRMLNDNVFGTREEDAYRRDFTVNA 181
Query: 127 LYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
LY D + ID +GG++DL R ++ IGD R ED +R+LR RF A + +D
Sbjct: 182 LYYDPIAETLIDPMGGVDDLSARLLRMIGDPTTRYREDPVRMLRTVRFAAKLDFQ-VDPP 240
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
L L+ + R++ E+ KLLE+ + L + + + G+ I + +
Sbjct: 241 TLQPIRTLAPLLENVPPARLFDEVMKLLESGHGLACLQRLRHEGLHHGILPLLDTL 296
>gi|320179882|gb|EFW54826.1| Poly(A) polymerase [Shigella boydii ATCC 9905]
Length = 435
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 15 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 71
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 72 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 130
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 131 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 190
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 191 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 249
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 250 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 309
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 310 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 369
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 370 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 403
>gi|298507269|gb|ADI85992.1| nucleic acid-independent polyadenylating polymerase [Geobacter
sulfurreducens KN400]
Length = 459
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 61/265 (23%), Positives = 104/265 (39%), Gaps = 38/265 (14%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + +L L + +VGG VRD L+ +D D+AT P+++ RIF R
Sbjct: 23 LVSPNALRVLYRLRDNGFIAYLVGGCVRDLLLGREPKDFDVATDATPNQIKRIFRNCRL- 81
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR------------------------SDLITDGRYA 105
+ I + ++ T R ++ + R+
Sbjct: 82 ---VGRRFRLAHIHFTDEIIEVATFRALSPPEQGEGEPVADETGQRGGDEAERLRPPRHL 138
Query: 106 KVVFTRDWKADS--------LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156
+ + LRRDFT+NAL +IDY GG+ DL+ I+ IGD
Sbjct: 139 VSDEGMVLRDNVFGTPGEDALRRDFTVNALAYCIADFSIIDYAGGMEDLQRGMIRTIGDP 198
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R ED +R+LR RF A G ++ + A + + ++ R++ E+ KL +
Sbjct: 199 RVRFTEDPVRMLRAVRFAAVLGF-AVEEETWQAMLDLAPAITRATAPRLYEEMLKLFLSG 257
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEI 241
A + G+F +F +
Sbjct: 258 EGERAYQLLRQTGLFAHLFPGFEAW 282
>gi|39998340|ref|NP_954291.1| polyA polymerase [Geobacter sulfurreducens PCA]
gi|39985286|gb|AAR36641.1| polyA polymerase [Geobacter sulfurreducens PCA]
Length = 455
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 61/265 (23%), Positives = 104/265 (39%), Gaps = 38/265 (14%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + +L L + +VGG VRD L+ +D D+AT P+++ RIF R
Sbjct: 19 LVSPNALRVLYRLRDNGFIAYLVGGCVRDLLLGREPKDFDVATDATPNQIKRIFRNCRL- 77
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR------------------------SDLITDGRYA 105
+ I + ++ T R ++ + R+
Sbjct: 78 ---VGRRFRLAHIHFTDEIIEVATFRALSPPEQGEGEPVADETGQRGGDEAERLRPPRHL 134
Query: 106 KVVFTRDWKADS--------LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156
+ + LRRDFT+NAL +IDY GG+ DL+ I+ IGD
Sbjct: 135 VSDEGMVLRDNVFGTPGEDALRRDFTVNALAYCIADFSIIDYAGGMEDLQRGMIRTIGDP 194
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R ED +R+LR RF A G ++ + A + + ++ R++ E+ KL +
Sbjct: 195 RVRFTEDPVRMLRAVRFAAVLGF-AVEEETWQAMLDLAPAITRATAPRLYEEMLKLFLSG 253
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEI 241
A + G+F +F +
Sbjct: 254 EGERAYQLLRQTGLFAHLFPGFEAW 278
>gi|238761613|ref|ZP_04622588.1| Poly(A) polymerase [Yersinia kristensenii ATCC 33638]
gi|238700127|gb|EEP92869.1| Poly(A) polymerase [Yersinia kristensenii ATCC 33638]
Length = 483
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 69/369 (18%), Positives = 133/369 (36%), Gaps = 29/369 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 60 SDNALKVLYRLNKSGFEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL--- 116
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ ++ + ++ T R G + + D
Sbjct: 117 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGTIEDD 175
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IG R ED +R+LR RF A
Sbjct: 176 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGSPETRYREDPVRMLRAVRFAA 235
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
I + + L + R++ E KLL++ + + +F+ +F
Sbjct: 236 KLDM-TISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 294
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + ++++ + + D + L + ++ A+K +
Sbjct: 295 PLIARHFTEHHDSPMERILVQVLKNTDYRLHNDKRVNPAFLFAAMLWYPLIEHAQKLTQE 354
Query: 289 REIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + I K + + +L++ +
Sbjct: 355 SGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPK 414
Query: 348 ILQVLSDII 356
+
Sbjct: 415 FRAAYDLLA 423
>gi|291613415|ref|YP_003523572.1| poly(A) polymerase [Sideroxydans lithotrophicus ES-1]
gi|291583527|gb|ADE11185.1| poly(A) polymerase [Sideroxydans lithotrophicus ES-1]
Length = 447
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/233 (26%), Positives = 104/233 (44%), Gaps = 13/233 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ L K+ +VGGAVRD L++ +D D+AT P+ V R+F + R
Sbjct: 41 ARRVTDGLQAAGFKAFVVGGAVRDLLLDRQPKDFDVATDATPEEVKRVFRRARI----IG 96
Query: 75 ISYGTIKIICRKKYFDITTLRS-------DLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ ++ +++T R + GR + D + D+ RRDFT N L
Sbjct: 97 RRFRLVHVMFGEETVEVSTFRRAIDAEDAETDEHGRILRDNEFGDQEQDAARRDFTANGL 156
Query: 128 YADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ D ++ DY G D+R T++ IGD R ED +R+LR R A G +D
Sbjct: 157 FYDPATQEIFDYHHGYEDIRANTLRMIGDPEVRYREDPVRMLRAVRLSAKLGM-KLDPAT 215
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
K K+ L + R++ E+ KLL + L I + + + +
Sbjct: 216 AAPISKMKELLSNVPEARLFDEMLKLLLSGQALPCIKKLRAMELHHGMLPMLD 268
>gi|332968885|gb|EGK07932.1| poly(A) polymerase [Kingella kingae ATCC 23330]
Length = 461
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 74/385 (19%), Positives = 148/385 (38%), Gaps = 39/385 (10%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+L L++ ++ +VGGAVRD L+ + +D D+AT P++V R+F ++R
Sbjct: 54 AAEKVLRDLHQAGFEAYLVGGAVRDLLLGVEPKDFDVATNATPEQVYRLFKRSRV----I 109
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + +++T RS DGR + V + D+ RRDFT NALY
Sbjct: 110 GRRFPIVHVMIGRDTIEVSTFRSGGKVKQNADGRIMQDVAYGTVEQDAHRRDFTCNALYY 169
Query: 130 DQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D +V+D+ G+ND++ R + IGD R +ED +RILR R ++++
Sbjct: 170 DIFRQEVLDFHQGVNDIQARRLVMIGDPKARYMEDPVRILRAIRLAGKLSF-EVEANTAA 228
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL----- 243
+ L+ R++ E+ K+L + N + + GI + L
Sbjct: 229 PLAECVVLLRKEPVSRLFDELMKILFSGNASGCLQQFHVLGIQNIPIHPMLTAMLHASQA 288
Query: 244 --------------DQLSQ-----VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284
++L V W ++ L + + + A
Sbjct: 289 GSLHMCVPALQQTDERLRNGQSVSVGFILAALFWDELNIYWQKELAYGKGTVAAMMAAVN 348
Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344
+ + ++ + + ++A+++ A + L Q
Sbjct: 349 QLRDEMEHGWGVPQRFSATMREIWLLQPHFENRRGGRPFRLLAQVRFRAAYDFLLLRAQS 408
Query: 345 TCFILQVLSDIIHWKKPLFPLTGDD 369
+ ++ +++ G D
Sbjct: 409 QSSLHELADWWTRFQRA-----GKD 428
>gi|224825650|ref|ZP_03698754.1| poly(A) polymerase [Lutiella nitroferrum 2002]
gi|224601874|gb|EEG08053.1| poly(A) polymerase [Lutiella nitroferrum 2002]
Length = 455
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 71/382 (18%), Positives = 134/382 (35%), Gaps = 37/382 (9%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + S L + + +VGGAVRD L++++ +D D+AT+ P++V +F ++R
Sbjct: 42 AALKVTSRLQEAGFTAYVVGGAVRDLLLDVNPKDFDVATSATPEQVHHLFRRSRI----I 97
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R D GR + D+ RRDFT+NAL+
Sbjct: 98 GRRFKIVHVMVGPETIEVTTFRGGSIDDTNETGRIMADNSYGSQEEDAHRRDFTVNALFY 157
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + I DY G+ DL+ R + IG R ED +R+LR R A ID +
Sbjct: 158 DPSDESIVDYHHGVKDLQARKLVMIGQPARRYQEDPVRMLRAVRLAAKLNF-EIDENTRK 216
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----SLD 244
LK R++ E+ KLL + + + + G+ + +F + + D
Sbjct: 217 PIRAHAHLLKKEPPARLFDEMLKLLMSGQAYSCLCKLREEGLSRGVFPLLDAVLDEEGKD 276
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK--------------------- 283
+ ++ + D + L++ + +
Sbjct: 277 EFLRLGLQSTDVRIREDKPVSVGFLLATLLWRQVSQQWTARLKEGERPVQALFDAIAEVE 336
Query: 284 --KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
+ + R F + Q ++ F A
Sbjct: 337 SLQDNEFAIPRRFSATMREIWLQQPRFDSRSGQRPFRFLEQPRFRAAFDFLSLRAQAGEV 396
Query: 342 HQDTCFILQVLSDIIHWKKPLF 363
H ++
Sbjct: 397 PMSLVQWWDDFQHADHDERQEL 418
>gi|262199208|ref|YP_003270417.1| poly(A) polymerase [Haliangium ochraceum DSM 14365]
gi|262082555|gb|ACY18524.1| poly(A) polymerase [Haliangium ochraceum DSM 14365]
Length = 495
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 14/222 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D+D ++ L + K+ +VGG VRD L++ + +D D+AT+ P+++ IF R
Sbjct: 22 DADADRVVRRLTRHGHKAYLVGGCVRDLLLDRNPKDFDVATSATPNQIRDIFRNCRI--- 78
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG------RYAKVVFTRDWKADSLRRDFTIN 125
+ + K + +T R+ D R+ V + D+ RRDFTIN
Sbjct: 79 -IGRRFRLAHVFFGDKIIETSTFRASPKHDDEGELLIRHDNVFGSATE--DARRRDFTIN 135
Query: 126 ALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
L+ D + +VIDYVGG +DL +R ++ IGD R ED +R+LR +F A G +I+
Sbjct: 136 GLFYDVRAEEVIDYVGGADDLDSRLVRTIGDPDIRFREDPVRMLRAIKFAARLGF-DIEE 194
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226
A ++ + ++ S R+ E+ +LL ++ ++
Sbjct: 195 QTYEALVRHRDEIRKCSPVRVGEEVYRLLRGGAARRSMELLH 236
>gi|237749035|ref|ZP_04579515.1| poly(A) polymerase [Oxalobacter formigenes OXCC13]
gi|229380397|gb|EEO30488.1| poly(A) polymerase [Oxalobacter formigenes OXCC13]
Length = 463
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 67/261 (25%), Positives = 123/261 (47%), Gaps = 13/261 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
++ + ++ +L + IVGGAVRD L+ L +D D+AT P++V R+F +
Sbjct: 36 LLSNNAVRVVRILQNEGYDAFIVGGAVRDLLLGLKPKDFDVATNATPEQVKRLFKRA--- 92
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD------GRYAKVVFTRDWKADSLRRDFT 123
+ + ++ + ++TT R GR + D+ RRDFT
Sbjct: 93 -FLIGRRFQIVHVMFGQDLIEVTTFRGASDKPAIKDESGRLLRDNNFGTQSEDAARRDFT 151
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
INA+Y + ++DY GG+ DLR++T++ IG+ R ED +R+LR RF A G +I
Sbjct: 152 INAMYYNPANQVLLDYHGGIKDLRSKTLRVIGNPEQRYREDPVRMLRIVRFAAKLGF-SI 210
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D + + S R++ E+ KLL + + ++ + + G+ + + + +++
Sbjct: 211 DKTTGAPIAALAPLMNNVPSARLFDEMLKLLMSGHSMSCLKELRARGLHQGLLP-LLDVA 269
Query: 243 LDQLSQVIEAEQVFEWKIDSL 263
L+Q E E +
Sbjct: 270 LEQPEAAHFIELSLEKTDQRI 290
>gi|298244031|ref|ZP_06967838.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Ktedonobacter racemifer DSM 44963]
gi|297557085|gb|EFH90949.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Ktedonobacter racemifer DSM 44963]
Length = 458
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 93/454 (20%), Positives = 160/454 (35%), Gaps = 53/454 (11%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTRYK-VIP 72
+I + + +VGG VRD L+ D D+AT LP+ + R+ + TR V+
Sbjct: 5 IIRLAQDFRAQHKQLYMVGGTVRDVLLQRGESADADLATDALPEEIKRLVAPTRPSAVVL 64
Query: 73 TSISYGTIKIICR-KKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GT+++I +ITT R + R +V F D D RRDFTINAL D
Sbjct: 65 VGERFGTVRLIYESNNIIEITTFRSERYNPESRKPEVCFGTDLAEDLQRRDFTINALARD 124
Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGD-AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
G +ID G DL I+ +G+ R ED LR+LR RF A I+S
Sbjct: 125 PLNGSIIDLFAGRQDLEEHIIRAVGNEPDKRFDEDPLRLLRAIRFAAQLDF-EIESSTWQ 183
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------- 241
+ + L+ +S ERI E+NKLL + +P + + G+ + I +V E+
Sbjct: 184 SIKRQANKLQKISRERIRDEMNKLLVSAHPAKGLDLLVEAGLMEYIMPEVMELRGVSQQP 243
Query: 242 ------SLDQLSQVIEAEQVFEWKIDSLLR-------------------FIVLISWQDKK 276
S D + V+ + + K+ +
Sbjct: 244 TPRAASSKDVYAHVLRVVERTQPKLKNRWCGLLHDIAKPRTKSVEDHKVHFFGHEDVGAH 303
Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA-- 334
+ K+ RE + + +I +
Sbjct: 304 MARDILKRLHFDREFIDSVSRVVRLHMRANAYTIDWTDGAVRRLMLDADHDLPTLLDLSS 363
Query: 335 ----------LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP-PGKKVGN 383
+ + Q L + PL G+++++ PG +
Sbjct: 364 ADITSYRVDKVARATARVAELTERCQRLREEAERVPIKSPLDGNELMQLFERGPGPWLRP 423
Query: 384 ILVHCKQEWINSSF-QLSQEDLHHLLRKLIASSQ 416
+ + I+ + +E L ++ + +
Sbjct: 424 LKEYLLSLVIDGALASDDKERAVSLAKEFVEREK 457
>gi|127514059|ref|YP_001095256.1| poly(A) polymerase [Shewanella loihica PV-4]
gi|126639354|gb|ABO24997.1| poly(A) polymerase [Shewanella loihica PV-4]
Length = 480
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 72/241 (29%), Positives = 110/241 (45%), Gaps = 16/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + ++F R
Sbjct: 65 SENAIKVLYRLHKSGFKAYLVGGGVRDILLGLEPKDFDVVTNATPEEIKKLFRNCRL--- 121
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ TLR +GR + D+ RRD
Sbjct: 122 -VGRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKVNAEGRLLRDNVYGTIDEDAERRD 180
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D + Y GGL DL +RT++ IGD R ED +R+LR RF G
Sbjct: 181 FTVNALYYDISDFSIHSYGGGLQDLESRTLRLIGDPQKRYREDPVRMLRAVRFATKLGM- 239
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+ID + LK + + R++ E+ KL A N V M + G+F +F V
Sbjct: 240 SIDKAAAQPISELAPLLKDIPAARMYEEVLKLFFAGQAQNNYVMMRDFGLFAPLFPLVDN 299
Query: 241 I 241
+
Sbjct: 300 L 300
>gi|159899134|ref|YP_001545381.1| polynucleotide adenylyltransferase region [Herpetosiphon
aurantiacus ATCC 23779]
gi|159892173|gb|ABX05253.1| Polynucleotide adenylyltransferase region [Herpetosiphon
aurantiacus ATCC 23779]
Length = 404
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 82/387 (21%), Positives = 143/387 (36%), Gaps = 19/387 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L ++ + +VGG VRD L+ V DIDI + I++ +
Sbjct: 20 LQWLIQTADTQGLACYLVGGCVRDWLLERPVGDIDIVVEGDAIMLAEIWATVWPDQLHIH 79
Query: 75 ISYGTIKIICRK----KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GT + + D+ + RS+ VV + AD RRDFTIN L
Sbjct: 80 PPFGTATLSWQDAAGVCSLDLISARSEYYPQPAALPVVSFANLAADLARRDFTINCLALR 139
Query: 131 QQGKV---IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ ID G DL+ I+ + ++D RILR RF A +
Sbjct: 140 LANQPTLLIDPQHGYADLQQSLIRVLH--DQSFIDDPTRILRAIRFAARLNFELEPQTAT 197
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ + R+W+E+ LL + L A+ + G+ ++F SL+Q +
Sbjct: 198 LLQQALPWLDQTTP-ARLWNELGLLLTEPSALAALSLADSWGVLGQLFGSGWSSSLNQQA 256
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+++ A Q + L + +S + + ++FSL + IR + + T
Sbjct: 257 EMVLASQPDQQLAIVWLLLMSQLS---PSAAQTQTQRFSLAKPIRLMVEQWPELAALVAT 313
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
L+ + L A + + + LQ L I LTG
Sbjct: 314 LNRTTLAAGQLDRLLSPFAPLLLEVWASNQATSIQRRIKYYLQYLRPIAS------ALTG 367
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWIN 394
D+ GI G + +L ++ ++
Sbjct: 368 RDLQAQGIAAGPQYKTLLAEAREGQLD 394
>gi|126666509|ref|ZP_01737487.1| tRNA nucleotidyltransferase/poly(A) polymerase [Marinobacter sp.
ELB17]
gi|126628897|gb|EAZ99516.1| tRNA nucleotidyltransferase/poly(A) polymerase [Marinobacter sp.
ELB17]
Length = 454
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 18/239 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+L LNK ++ +VGG VRD L++ +D DIAT P+ V +F +R
Sbjct: 42 SEPAKKVLHRLNKAGYEAYLVGGGVRDILLSGQPKDFDIATDATPEEVHELFRNSRL--- 98
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------------DGRYAKVVFTRDWKADSLR 119
+ + ++ ++ ++TT R + G+ + + + D+LR
Sbjct: 99 -IGRRFRIVHVVFGREVIEVTTFRGNANPADDDDDDRKTSEHGQLLRDNVYGNLEEDALR 157
Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINALY + VID+ G++DL NR ++ IGD R ED +R+LR RF A
Sbjct: 158 RDFTINALYYCIRDFSVIDFANGIDDLNNRQMRLIGDPETRYREDPVRMLRAIRFAAKLD 217
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
I+ + L + + R++ E+ KL A + + + +F D
Sbjct: 218 F-AIEPATEAPIRELAPLLTHIPAARLFDEVLKLFSAGYGEATFDKLRHYDLLAPLFPD 275
>gi|213021254|ref|ZP_03335701.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. 404ty]
Length = 206
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 17/182 (9%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 23 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 79
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 80 -VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 138
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 139 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 198
Query: 179 EK 180
+
Sbjct: 199 MR 200
>gi|17231481|ref|NP_488029.1| polyA polymerase [Nostoc sp. PCC 7120]
gi|17133124|dbj|BAB75688.1| polyA polymerase [Nostoc sp. PCC 7120]
Length = 904
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 72/433 (16%), Positives = 139/433 (32%), Gaps = 50/433 (11%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLS------VQDIDIATTIL--------PDRVMRIFSK 65
+ +VGGAVRD L+ + + DID+ + + +
Sbjct: 479 QAAEERGWHLYLVGGAVRDLLLAEAAAGTLMITDIDLVVDGFHKSADVGAGVELAKALQE 538
Query: 66 TR-YKVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
+ ++ T ++ K + DI T R++ V + D
Sbjct: 539 IYPAARLEIHGAFQTAALLWHKDPDLDSLWVDIATARTEFYPYPAANPEVEASSIRQDLY 598
Query: 119 RRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
RRDFTINAL + G ++D+ GGL DL+ + I+ + + +ED RI R RF
Sbjct: 599 RRDFTINALALRLTSPRAGDLLDFFGGLLDLKAKQIRVLHA--NSFIEDPTRIYRGVRFA 656
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWS----------EINKLLEAKNPLNAIVH 224
+G G+ +++ E+ +LEA +A+
Sbjct: 657 VRFGFAIEPRTEEYIRYAINSGVYDRTAQNNTKTPALQTRLKTELKHILEAPYWRSALQL 716
Query: 225 MYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI------VLISWQDKKSI 278
+ + G + I + S ++ + + L ++ K
Sbjct: 717 LDDLGALQCIHPTLSLDSELTKQLLLLERCLRRFDPQQNLIPWQMRLEAIIAHLAPKYRG 776
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
I++ ++LS + K + L +
Sbjct: 777 KVAKNLQLQEDSIQHLQNLAVAQTEIIQSLSEYQRPSQVVQLLRKYNLEILILIALQSQR 836
Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398
+ Q+ + W L G+D+ K G PG + +L + ++ +
Sbjct: 837 PIR-------RQIWQYLTVWANVQPILNGNDLKKLGYKPGPQYRQMLDDLLAKTLDGNIT 889
Query: 399 LSQEDLHHLLRKL 411
E L ++
Sbjct: 890 NQVEAQEFLAQQY 902
>gi|117620345|ref|YP_858006.1| poly(A) polymerase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117561752|gb|ABK38700.1| poly(A) polymerase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 499
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 66/243 (27%), Positives = 108/243 (44%), Gaps = 18/243 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNKG ++ +VGG VRD L+ + +D DIAT P+++ +FS R
Sbjct: 63 SENALKVLYRLNKGGYEAYLVGGGVRDLLLGKTPKDFDIATDATPEQIKSLFSNCRL--- 119
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------------DGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R +G + D+ R
Sbjct: 120 -IGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIVEDAER 178
Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + + D+ GGL DL R ++ IGD R ED +R+LR RF A
Sbjct: 179 RDFTVNALYYSAKDFTLHDFEGGLEDLAERKLELIGDPETRYREDPVRMLRAVRFAAKLD 238
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + L+ + + R++ E KL A + L + G+F+++F V
Sbjct: 239 M-TISPRTAAPIKELAPLLQDIPAARLFEETLKLFLAGDGLATYKLLREYGLFQQLFPQV 297
Query: 239 QEI 241
+
Sbjct: 298 AAL 300
>gi|167622692|ref|YP_001672986.1| poly(A) polymerase [Shewanella halifaxensis HAW-EB4]
gi|167352714|gb|ABZ75327.1| poly(A) polymerase [Shewanella halifaxensis HAW-EB4]
Length = 430
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 16/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + R+F R
Sbjct: 14 SDNAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKRLFRNCRL--- 70
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ TLR GR + D+ RRD
Sbjct: 71 -VGRRFRLAHIVFGRDVIEVATLRGHHVDSEEKISKTNESGRLLRDNVYGSIDEDAERRD 129
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D + Y GGL DL +RTI+ IGD R ED +R+LR RF
Sbjct: 130 FTVNALYYDISDFSIHSYGGGLQDLESRTIRLIGDPETRYREDPVRMLRAVRFATKLDM- 188
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
I+++ + LK + + R++ E+ KL A L M G+F+ +F V+
Sbjct: 189 TIEANAAKPIKGLARLLKDIPAARMYEEVLKLFFAGKALENFHMMREFGLFEPLFPQVEA 248
Query: 241 I 241
+
Sbjct: 249 L 249
>gi|83648899|ref|YP_437334.1| tRNA nucleotidyltransferase/poly(A) polymerase [Hahella chejuensis
KCTC 2396]
gi|83636942|gb|ABC32909.1| tRNA nucleotidyltransferase/poly(A) polymerase [Hahella chejuensis
KCTC 2396]
Length = 457
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 72/380 (18%), Positives = 142/380 (37%), Gaps = 25/380 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +L LN + +VGG VRD L+ +D D+AT+ P++V F+ R
Sbjct: 39 SPAALKVLYRLNSANYDAFLVGGGVRDLLLGEQPKDFDVATSATPEQVREQFNNCRL--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR------------DWKADSLR 119
+ + ++ ++ T R+ G T + + D+LR
Sbjct: 96 -IGRRFRLAHVRFGREIIEVATFRAGHQNAGEDDGDAVTSDSGQILRDNVYGNQEEDALR 154
Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + + DY GG+ D+ +R ++ IGD R ED +R+LR RF A
Sbjct: 155 RDFTVNALYYCVRDFSIYDYAGGIEDIEHRVLRLIGDPETRYREDPVRMLRAARFAAKLD 214
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I+ ++ L + S R++ E+ KL + + + +FK +F +
Sbjct: 215 F-SIEERTASPILELGPLLLNIPSARLFEEVLKLFLSGKAVRTFEILRQFDLFKFLFPET 273
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ ++ + D + ++ + + + L + + +
Sbjct: 274 DRLLENEHPHAEKLILQALRNTDKRIAQDKPVTPAFLYAAMLWSPMQRLQQRYQDDGLPP 333
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + K L + L L L + + + ++
Sbjct: 334 MQAMHKAIDKVLAQQVKHTALPKRFSQPMREIWELQL---RLPRKQSKRLQGLVEHPRFR 390
Query: 359 KKPLFPL----TGDDVVKYG 374
F + +G+D+ G
Sbjct: 391 AAYDFLVLREQSGEDLQGLG 410
>gi|284035597|ref|YP_003385527.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Spirosoma linguale DSM 74]
gi|283814890|gb|ADB36728.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Spirosoma linguale DSM 74]
Length = 484
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 77/456 (16%), Positives = 163/456 (35%), Gaps = 67/456 (14%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ + ++ + ++GG VRD ++ +DID+ + K
Sbjct: 9 KNPVFDVVSQQADRLGLPTYVIGGFVRDLILARPSKDIDVVCIGSGITLAEAVGKALNAH 68
Query: 71 IPTSISYGTIKII----CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ ++GT + + + R + +V + D RRDFTINA
Sbjct: 69 VAVFPNFGTAMLRAMQGDEEWEVEFVGARKESYRSESRKPIVEDGTLEDDQNRRDFTINA 128
Query: 127 LYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ +++D GL DL+ + I+ + +D LR++R RF + +I
Sbjct: 129 MGISLNKASFGELLDPFDGLKDLKKKIIRTPLNPDITFSDDPLRMMRAIRFASQL-TFDI 187
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ D A ++ + + I+S ER+ E+NK++ + P +Y+GG+ + IF ++ +
Sbjct: 188 EPDTFDAIMRMNERIDIVSRERVTDELNKIILSPVPSYGFKLLYHGGLLERIFPELIALK 247
Query: 243 -----------------LDQLSQVIEAEQVF----EWKIDSLLRFIVLISWQDKKSILSM 281
L L + E + + LR+ L+ K +
Sbjct: 248 GVETIEGKGHKDNFYHTLQVLDNIANRADKNQYPGEAENELWLRWAALLHDIAKPATKRF 307
Query: 282 AKKFSLP-----------------------REIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+K E F+ + L+ +I
Sbjct: 308 DQKAGWTFHGHEDLGARWVPGIFRTMKLPLNEHMRFVQKLVRLHLRPIALTKEQITDSAL 367
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPL 365
L+ +AL ++T ++ + + L + ++ +
Sbjct: 368 RRLLVDAGEDLEGLMALCRADITSKNYERVQKHLRNFDRVERKLHDLEERDKLRSFQPVI 427
Query: 366 TGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLS 400
TG+ +++ +G+PP K+VG I ++ ++ S
Sbjct: 428 TGELIMETFGLPPSKEVGEIKTVLREAILDGLVPNS 463
>gi|256752052|ref|ZP_05492920.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter
ethanolicus CCSD1]
gi|256749062|gb|EEU62098.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter
ethanolicus CCSD1]
Length = 388
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 73/394 (18%), Positives = 133/394 (33%), Gaps = 31/394 (7%)
Query: 14 DLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
DLI +L ++ K + KS IVGG VRD L+ + DID+ I I
Sbjct: 9 DLIKLLKEISSKTKIKSYIVGGVVRDFLLGVKNLDIDVVVEGDGIEFAYILLSYLKGDIV 68
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
++ T + D+ + R + + + D RRDFTIN L D
Sbjct: 69 VYEAFRTATLSYDGISIDVISARKEYYERPAALPTIEFSNIYDDMARRDFTINTLAYDVI 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ I + + + + ++D RI R R+ Y I+
Sbjct: 129 EEKILDYFNGLEDLKKGLIRVLHPK-SFIDDPTRIFRAIRYATRYSF-EIEEKTHNLMKD 186
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + +++LS++RI +EI +L+ I + GI K IF + +
Sbjct: 187 SIENIRLLSADRIRNEIFLILKESKAKEMIDKLIYYGIDKVIFDGIT----LNTQHLDTV 242
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E ++ L + +D I + +
Sbjct: 243 YVNLEIELYRFLVLFYYLKEKDINEIEKRL----------------------RINKIYLK 280
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL--SDIIHWKKPLFPLTGDDV 370
K +++ I T ++ ++V+ K + G D+
Sbjct: 281 ALKDLVFLREQLNCQNKNIRKIRETIEETKEEVLRAIEVMEGEKAEKIIKGKLTVKGKDI 340
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
G+PPG G ++ + + IN E++
Sbjct: 341 ENLGLPPGSLYGELMDNVFEAKINGIIATRDEEI 374
>gi|15676739|ref|NP_273884.1| polyA polymerase [Neisseria meningitidis MC58]
gi|7226078|gb|AAF41254.1| polyA polymerase [Neisseria meningitidis MC58]
Length = 453
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGTGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ + IGDA R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-ELSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I L + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHLLLNAL 267
>gi|333021774|gb|EGK41023.1| poly(A) polymerase family protein [Shigella flexneri K-227]
Length = 435
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 69/394 (17%), Positives = 132/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 15 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 71
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 72 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 130
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A
Sbjct: 131 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLD 190
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 191 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 249
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 250 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 309
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 310 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 369
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 370 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 403
>gi|120553603|ref|YP_957954.1| poly(A) polymerase [Marinobacter aquaeolei VT8]
gi|120323452|gb|ABM17767.1| poly(A) polymerase [Marinobacter aquaeolei VT8]
Length = 455
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 20/243 (8%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L LNK ++ +VGG VRD L+ +D DIAT P+ V +F +R
Sbjct: 40 MISEPAKKVLHRLNKSGYEAYLVGGGVRDILLGGQPKDFDIATNATPEEVHDLFRNSRL- 98
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRDWKA 115
+ + ++ ++ ++TT R + G + + +
Sbjct: 99 ---IGRRFRIVHVVFGREIIEVTTFRGNARDTDDDLADDEHKTSEHGLLLRDNVYGNQEE 155
Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
D+LRRDFTINALY + +ID+ G+ DL+NR I+ IGD R ED +R+LR RF
Sbjct: 156 DALRRDFTINALYYCIRDFSIIDFANGVQDLKNRQIRLIGDPETRYREDPVRMLRAIRFA 215
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
A I+ + + L + R++ E+ KL A + + + G+ +
Sbjct: 216 AKLDF-EIEPETEAPIRELAPLLAHIPPARLFDEVLKLFSAGHGEATYRLLQDYGLLAPL 274
Query: 235 FLD 237
F +
Sbjct: 275 FPE 277
>gi|161504691|ref|YP_001571803.1| poly(A) polymerase I [Salmonella enterica subsp. arizonae serovar
62:z4,z23:-- str. RSK2980]
gi|160866038|gb|ABX22661.1| hypothetical protein SARI_02813 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 472
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 78/412 (18%), Positives = 141/412 (34%), Gaps = 49/412 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I S+ + L + R++ E KLL+A N + +F+ +F +
Sbjct: 228 M-RISSETAEPIPRLAALLNDIPPARLFEESLKLLQAGNGFETYQQLREYNLFQPLFPTI 286
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +E R I + I + + F
Sbjct: 287 TRYFTENGDSAME-------------RIIAQVLKNTDNRIHNDMRVNPAFLFAAMFWYPL 333
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S F L + V+ + +D + +S
Sbjct: 334 LEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGK 393
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSSFQLSQEDLHHLLR 409
+ ++++ K + + + + + +L L +
Sbjct: 394 RAWK-------LMEH-----PKFRAAFDLLELRAQVE---KNT--ELQRLAQ 428
>gi|166711861|ref|ZP_02243068.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 455
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 14/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + + +VGGAVRD L+ +D D+AT+ P+ V +F R
Sbjct: 39 SPNALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALFRNCRL--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------TDGRYAKVVFTRDWKADSLRRDFT 123
+ ++ ++ ++ T R++ +GR + + D++RRDFT
Sbjct: 96 -IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIEDDAIRRDFT 154
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DY GG D++ R +K IGD R ED +R+LR R + I
Sbjct: 155 CNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLASKLNF-EI 213
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
++ + L + R++ EI KL + + + + + G+F +F +
Sbjct: 214 EAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLFGALFPE 268
>gi|116052874|ref|YP_793191.1| poly(A) polymerase [Pseudomonas aeruginosa UCBPP-PA14]
gi|115588095|gb|ABJ14110.1| poly(A) polymerase [Pseudomonas aeruginosa UCBPP-PA14]
Length = 467
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 19/240 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ + ++ +L + ++ +VGG VRD ++ ++ +D D+AT+ P++V F R
Sbjct: 38 FSRNAVKVVEILQRAGYQAYVVGGCVRDQMLGIAPKDFDVATSATPEQVRAEFRNARI-- 95
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLI-------------TDGRYAKVVFTRDWKADS 117
+ + + ++ ++ T R+ GR + + D+
Sbjct: 96 --IGRRFKLVHVHFGREIIEVATFRAHHPEGQDDGDSRASSNESGRILRDNVYGSLEDDA 153
Query: 118 LRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINALY D +++DY G++D+RNR I+ IGD R LED +R+LR RF A
Sbjct: 154 QRRDFTINALYFDVTSERLLDYANGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVRFAAK 213
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + L+ + S R++ E+ KL A + +F +F
Sbjct: 214 LDF-EIEKHSATPIRRLAPLLREIPSARLFDEVLKLFLAGRAERTFELLVEYELFAPLFP 272
>gi|58581989|ref|YP_201005.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84623904|ref|YP_451276.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188576403|ref|YP_001913332.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Xanthomonas
oryzae pv. oryzae PXO99A]
gi|58426583|gb|AAW75620.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84367844|dbj|BAE69002.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188520855|gb|ACD58800.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Xanthomonas
oryzae pv. oryzae PXO99A]
Length = 455
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 14/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + + +VGGAVRD L+ +D D+AT+ P+ V +F R
Sbjct: 39 SPNALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALFRNCRL--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------TDGRYAKVVFTRDWKADSLRRDFT 123
+ ++ ++ ++ T R++ +GR + + D++RRDFT
Sbjct: 96 -IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIEEDAIRRDFT 154
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DY GG D++ R +K IGD R ED +R+LR R + I
Sbjct: 155 CNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLASKLNF-EI 213
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
++ + L + R++ EI KL + + + + + G+F +F +
Sbjct: 214 EAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLFGALFPE 268
>gi|254468684|ref|ZP_05082090.1| poly(A) polymerase [beta proteobacterium KB13]
gi|207087494|gb|EDZ64777.1| poly(A) polymerase [beta proteobacterium KB13]
Length = 397
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 76/377 (20%), Positives = 139/377 (36%), Gaps = 31/377 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ ++ L + + ++ +VGG +RD L+N+ +D DIAT PD+V IF +R
Sbjct: 25 VLEVIRKLQQYDFQAYMVGGCIRDLLLNIQPKDFDIATNAHPDQVTAIFKNSRI----IG 80
Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT----DGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ + + ++ +++T R + + D+ RRDFT+NA++ D
Sbjct: 81 RRFKIVHVRIDRQIIEVSTFRKKPSEVNKLRNGVVQDNAFGTIEEDAQRRDFTMNAIFYD 140
Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ D G D+ NR I FIG+ RI ED +R+LR RF A L
Sbjct: 141 PLNNHLFDPFNGKKDIENRNINFIGNPEQRINEDPVRLLRAIRFHAKLEFN--QGLTLGN 198
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
K L + RI+ E+ K + +I + + F + SLD+ S +
Sbjct: 199 IKKFIPLLDNIPYSRIFDEMMKFFLTGHAKKSIFVLKKYQLLDLFFPFLSNHSLDKNSLL 258
Query: 250 IEAEQV------FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL-------- 295
I + ++ V++ SI + K +L +I+ F
Sbjct: 259 IHGMNNTDSRVKADKTVNPGFLMAVILWDAFNYSIKNNDSKLTLDTQIKDFFNKTDPNIF 318
Query: 296 ------ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
Q + + + ++ L A L ++ +
Sbjct: 319 IHNRFIKYISEIWRLQPRFTKLKTRSVYRLSNHPRFRAAYDFLLLRCSSDQEEKRYGEWW 378
Query: 350 QVLSDIIHWKKPLFPLT 366
+ + LT
Sbjct: 379 TKWQEASEASRKKLLLT 395
>gi|221133901|ref|ZP_03560206.1| poly(A) polymerase I [Glaciecola sp. HTCC2999]
Length = 443
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 18/241 (7%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L LN ++ +VGG VRD L+N +D DIAT P+++ F R
Sbjct: 32 NAVKVLRRLNAAGFEAYLVGGCVRDLLLNQHPKDFDIATDATPEQIKAQFKNCRI----I 87
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLRRD 121
+ ++ ++ ++ T R I D G+ + + D+ RRD
Sbjct: 88 GRRFRLAHVVFGREIIEVATFRGPHIQDKNTSDKSKKDGEGQLVRDNVFGTLEQDAARRD 147
Query: 122 FTINALYADQQGKVIDYVGGLND-LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+Y + I G D + +TI IGD R ED +R++R RF A
Sbjct: 148 FTINAMYYNVVDGTIRDFAGGIDSIEEKTISLIGDPETRYREDPVRMIRAVRFAAKLDM- 206
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
ID A K L+ + R++ E+ KLL + L + G+F ++F
Sbjct: 207 TIDEVSDEAIHKFAYLLENIPPARLFEEVLKLLFSGQGLTTYQLLLEYGLFDKLFPQTGP 266
Query: 241 I 241
+
Sbjct: 267 L 267
>gi|238786773|ref|ZP_04630574.1| Poly(A) polymerase [Yersinia frederiksenii ATCC 33641]
gi|238725141|gb|EEQ16780.1| Poly(A) polymerase [Yersinia frederiksenii ATCC 33641]
Length = 521
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 70/369 (18%), Positives = 135/369 (36%), Gaps = 29/369 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 97 SDNALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL--- 153
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ ++ + ++ T R G + + D
Sbjct: 154 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGTIEDD 212
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 213 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAA 272
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+I ++ + L + R++ E KLL++ + + +F+ +F
Sbjct: 273 KLDM-SISAETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 331
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + ++++ + D + L + ++ A+K +
Sbjct: 332 PLIARNFTEHHDSPMERILVQVLKNTDHRLHNDKRVNPAFLFAAMLWYPLIEHAQKLTQE 391
Query: 289 REIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + I K + + +L++ +
Sbjct: 392 SGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPK 451
Query: 348 ILQVLSDII 356
+
Sbjct: 452 FRAAYDLLA 460
>gi|330504808|ref|YP_004381677.1| poly(A) polymerase [Pseudomonas mendocina NK-01]
gi|328919094|gb|AEB59925.1| poly(A) polymerase [Pseudomonas mendocina NK-01]
Length = 462
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 64/240 (26%), Positives = 110/240 (45%), Gaps = 20/240 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I+++ L K ++ +VGG VRD L+++ +D D+AT+ P++V F R
Sbjct: 39 SRHAISVVERLQKAGYQAYLVGGCVRDLLLDIDPKDFDVATSATPEQVRAEFRNARV--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--------------ITDGRYAKVVFTRDWKADS 117
+ + + ++ ++ T R++ GR + + D+
Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRANHPQGEEEENSNQAARHESGRILRDNVYGTLEDDA 154
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINALY D Q ++DY G++D+RN ++ IGD R LED +R+LR RF A
Sbjct: 155 QRRDFTINALYYDPTQEHILDYARGMHDVRNHLVRLIGDPEQRYLEDPVRMLRAVRFAAK 214
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + L+ + S R++ E+ KL A + +F ++F
Sbjct: 215 LDF-EIEKHSAAPIRRLAPMLRDIPSARLFDEVLKLFLAGYAEYTFDLLIEHDLFAQLFP 273
>gi|109900234|ref|YP_663489.1| poly(A) polymerase [Pseudoalteromonas atlantica T6c]
gi|109702515|gb|ABG42435.1| poly(A) polymerase [Pseudoalteromonas atlantica T6c]
Length = 415
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 81/410 (19%), Positives = 147/410 (35%), Gaps = 36/410 (8%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
L L+ ++ +VGG VRD L+ +D D+ T P++V +F R +
Sbjct: 2 LYRLHNNGYQAFLVGGCVRDILLGKKPKDFDVTTDATPEQVKELFRNCRL----IGRRFR 57
Query: 79 TIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVFTRDWKADSLRRDFT 123
++ ++ ++ T R G+ + + D+ RRDFT
Sbjct: 58 LAHVVFGREVIEVATFRGHHPVEDENAKEQNLSKQSDHGQLLRDNVFGSIEEDAERRDFT 117
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+Y + + D+ G+ ++ R I IGD R ED +R+LR RF G I
Sbjct: 118 VNAMYYNIADYSIHDFANGMEAVKKRQITMIGDPATRYREDPVRMLRAVRFAVKLGM-KI 176
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ + + + R++ E+ KLL + L + G+F+++F + +
Sbjct: 177 SPETAKPMYELAPLMANIPPARLFEEVLKLLLSGQGLETYKLLNEFGLFEQLFPQLTPLL 236
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
Q S+ + + D+ + S A P E R
Sbjct: 237 KSQNSRELAFIEQVLMNTDNRI-----NSDMKVTPAFIFAALLWYPLEERCQ-QHMVEGG 290
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
N + + + ++MI K L + + + P
Sbjct: 291 LNHFDAFNLALSDVLHRQIQRIMIPKRFTITVREIWQLQQRLPKRYGR--RAFQMLEHPK 348
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL-SQEDLHHLLRKL 411
F D ++ G G G +L Q W + FQ + E +L+ L
Sbjct: 349 FRAAYDFLLIRGQIEG---GELLT-LAQWW--TDFQNVNPEQRQGMLKTL 392
>gi|15599921|ref|NP_253415.1| poly(A) polymerase [Pseudomonas aeruginosa PAO1]
gi|107103826|ref|ZP_01367744.1| hypothetical protein PaerPA_01004897 [Pseudomonas aeruginosa PACS2]
gi|218893822|ref|YP_002442691.1| poly(A) polymerase [Pseudomonas aeruginosa LESB58]
gi|254238536|ref|ZP_04931859.1| poly(A) polymerase [Pseudomonas aeruginosa C3719]
gi|254244371|ref|ZP_04937693.1| poly(A) polymerase [Pseudomonas aeruginosa 2192]
gi|296391553|ref|ZP_06881028.1| poly(A) polymerase [Pseudomonas aeruginosa PAb1]
gi|313109707|ref|ZP_07795647.1| LOW QUALITY PROTEIN: poly(A) polymerase [Pseudomonas aeruginosa
39016]
gi|9950987|gb|AAG08113.1|AE004886_5 poly(A) polymerase [Pseudomonas aeruginosa PAO1]
gi|126170467|gb|EAZ55978.1| poly(A) polymerase [Pseudomonas aeruginosa C3719]
gi|126197749|gb|EAZ61812.1| poly(A) polymerase [Pseudomonas aeruginosa 2192]
gi|218774050|emb|CAW29866.1| poly(A) polymerase [Pseudomonas aeruginosa LESB58]
gi|310882149|gb|EFQ40743.1| LOW QUALITY PROTEIN: poly(A) polymerase [Pseudomonas aeruginosa
39016]
Length = 467
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 19/240 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ + ++ +L + ++ +VGG VRD ++ ++ +D D+AT+ P++V F R
Sbjct: 38 FSRNAVKVVEILQRAGYQAYVVGGCVRDQMLGIAPKDFDVATSATPEQVRAEFRNARI-- 95
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLI-------------TDGRYAKVVFTRDWKADS 117
+ + + ++ ++ T R+ GR + + D+
Sbjct: 96 --IGRRFKLVHVHFGREIIEVATFRAHHPEGQDDGDSRASSNESGRILRDNVYGSLEDDA 153
Query: 118 LRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINALY D +++DY G++D+RNR I+ IGD R LED +R+LR RF A
Sbjct: 154 QRRDFTINALYFDVTSERLLDYANGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVRFAAK 213
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + L+ + S R++ E+ KL A + +F +F
Sbjct: 214 LDF-EIEKHSAAPIRRLAPLLREIPSARLFDEVLKLFLAGRAERTFELLVEYELFAPLFP 272
>gi|290476646|ref|YP_003469551.1| poly(A) polymerase I [Xenorhabdus bovienii SS-2004]
gi|289175984|emb|CBJ82787.1| poly(A) polymerase I [Xenorhabdus bovienii SS-2004]
Length = 503
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 77/384 (20%), Positives = 146/384 (38%), Gaps = 30/384 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L++ +D DIAT P++V ++F R
Sbjct: 82 SDNALKVLYRLNKSGFQAYLVGGGVRDLLLHKKPKDFDIATNATPEQVRKLFRNCRL--- 138
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118
+ I+ ++ T R G + + D++
Sbjct: 139 -VGRRFRLAHIMFGPDVIEVATFRGSHEQVESNDRNQSQKAQSGMLLRDNIFGSVEEDAV 197
Query: 119 RRDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTIN+LY + + DYVGG+ DL+ I+ IGD R ED +R+LR RF +
Sbjct: 198 RRDFTINSLYYGIEDFALRDYVGGMADLQAGIIRLIGDPETRYREDPVRMLRAVRFASKL 257
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
I+ + LK + S R++ E KLL++ + + + +F+ +F
Sbjct: 258 DM-TIEKTTAEPIPQLAFLLKDIPSARLFEESLKLLQSGHGYSTYKLLREYNLFQLLFPM 316
Query: 238 VQ-------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
+Q + L++L + + + + D + L + ++ A+K S
Sbjct: 317 MQRGFTPNSDSPLEKLLEQVLKNTDYRLQNDKRVNPAFLFAAMLWYPLIEHAEKLSQEGG 376
Query: 291 IRYFLISFFNCN-FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
+ Y+ N + I K + + +L++ +
Sbjct: 377 LPYYDAFALAMNDILDEQCGSIAIPKRHTTTMRDIWLLQLRLPRRQGKRANKLMEHPKFR 436
Query: 350 QVLSDIIHWKKPLFPLTGDDVVKY 373
+ ++ +
Sbjct: 437 AAYDLLELRASVEPR---HELKEL 457
>gi|158319038|ref|YP_001511546.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Frankia sp. EAN1pec]
gi|158114443|gb|ABW16640.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Frankia sp. EAN1pec]
Length = 508
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 80/466 (17%), Positives = 160/466 (34%), Gaps = 70/466 (15%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ---------------DIDIATTILPDR 58
+ + +VGG+VRD+L+ + D+D T P+R
Sbjct: 26 PADELGRIFADHGHTLHLVGGSVRDALLGRAGDPSDTSATGGTGGGAPDLDFTTDARPER 85
Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADS 117
V+ I I++GT+ + R F++TT R R V + + D
Sbjct: 86 VLEITRGWAEATWDAGIAFGTVGLARRGVRFEVTTYRSESYDRTSRNPAVTYGEGLQEDL 145
Query: 118 LRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
+RRDFT+NA+ G +D GG+ DL ++ G +D LRI+R RF A
Sbjct: 146 VRRDFTVNAMAVSVPGHDFVDLFGGMADLARGVLRTPGPPEASFDDDPLRIMRAARFEAA 205
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
G + +A + + I+S ER+ E+ KL+ +++P + + G+ +
Sbjct: 206 LGLTPVPELVAAMRSRASR-ISIVSPERVRDELRKLIASRDPAAGLERLVEVGVADLVLP 264
Query: 237 DV-------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM-- 281
++ +++ ++ + +A + + D +LR+ L+ K
Sbjct: 265 ELGAMRMEIDEHHQHKDVYAHTMTVLRQAMALEDDGPDEILRWAALLHDIGKPRTRRHIA 324
Query: 282 --------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFY 318
P+++ + S + E Y
Sbjct: 325 GGGVSFHHHEVVGRDMTRRRLVALRFPKDVVDAISSLVYLHLRFHGYGSGEWTDAAVRRY 384
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGD 368
++ +++L + + + + + L+GD
Sbjct: 385 VHDAGPQLSRLHKLVRSDCTTRNRRKAENLARAYRSLEERIADLAAREEIAAIRPELSGD 444
Query: 369 DVVK-YGIPPGKKVGNILVHCKQEWINSSFQLS---QEDLHHLLRK 410
D++ G+PP + VG + + +L R+
Sbjct: 445 DIMALLGLPPSRLVGQARAYMLDVRFERGLLGREAAEAELFRWARE 490
>gi|152983716|ref|YP_001350768.1| poly(A) polymerase [Pseudomonas aeruginosa PA7]
gi|150958874|gb|ABR80899.1| poly(A) polymerase [Pseudomonas aeruginosa PA7]
Length = 467
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 19/240 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ + ++ +L + ++ +VGG VRD ++ ++ +D D+AT+ P++V F R
Sbjct: 38 FSRNAVKVVEILQRAGYQAYVVGGCVRDQMLGIAPKDFDVATSATPEQVRAEFRNARI-- 95
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLI-------------TDGRYAKVVFTRDWKADS 117
+ + + ++ ++ T R+ GR + + D+
Sbjct: 96 --IGRRFKLVHVHFGREIIEVATFRAHHPEGQDDGDSRASSNESGRILRDNVYGSLEDDA 153
Query: 118 LRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINALY D +++DY G++D+RNR I+ IGD R LED +R+LR RF A
Sbjct: 154 QRRDFTINALYFDVTSERLLDYAHGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVRFAAK 213
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + L+ + S R++ E+ KL A + +F +F
Sbjct: 214 LDF-EIEKHSAAPIRRLAPLLREIPSARLFDEVLKLFLAGRAERTFELLVEYELFAPLFP 272
>gi|161367653|ref|NP_285839.2| poly(A) polymerase I [Escherichia coli O157:H7 str. EDL933]
Length = 472
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 132/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK + +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 52 SENALKVMYRLNKAGYEXWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 406
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 407 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 440
>gi|319410202|emb|CBY90540.1| K00970 poly(A) polymerase [Neisseria meningitidis WUE 2594]
Length = 478
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGA+RD L+ + +D D+AT +P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAIRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRI----V 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-ELSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 267
>gi|297620654|ref|YP_003708791.1| Poly(A) polymerase [Waddlia chondrophila WSU 86-1044]
gi|297375955|gb|ADI37785.1| Poly(A) polymerase [Waddlia chondrophila WSU 86-1044]
Length = 413
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 5/228 (2%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
DSD + ++ LN+ + +VGG+VRD L+ +D DI+T+ P + +IF +
Sbjct: 19 DSDALYVIRKLNEAGYTAYLVGGSVRDLLVKREPKDFDISTSAHPQEIKKIFRRN---CF 75
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA-D 130
+ I KK +++T RS + + D +RRDFTIN L+
Sbjct: 76 LIGKRFRLAHIKFGKKIIEVSTFRSGENASDLIVRDNTWGTEEEDVIRRDFTINGLFYDP 135
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ KVIDYVGG D+ + ++ IGD R +D +R+LR +F A +G NID A
Sbjct: 136 FEHKVIDYVGGWEDIHQKVLRSIGDPIIRFKQDPVRMLRLIKFRARFGF-NIDEQTKQAL 194
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I +K + S RI E+ ++LE+ M + +F +
Sbjct: 195 IATRKEITKSSPARILEEMLRMLESGAAAQFFHLMTQAKMLHLLFPML 242
>gi|211638719|emb|CAR67336.1| poly(a) polymerase (ec 2.7.7.19) (pap) (plasmid copy number
protein) [Photorhabdus asymbiotica subsp. asymbiotica
ATCC 43949]
Length = 494
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 79/385 (20%), Positives = 140/385 (36%), Gaps = 43/385 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK + +VGG VRD L+ +D DIAT P++V ++F R
Sbjct: 72 SENALKVLYRLNKSGFDAYLVGGGVRDLLLGTKPKDFDIATNATPEQVRKLFRNCRL--- 128
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--------------WKADS 117
+ I+ + ++ T R + ++ + D+
Sbjct: 129 -VGRRFRLAHIMFGPEVIEVATFRGPHEQTDANNEKNQSQQAQSGMLLRDNTFGSIEEDA 187
Query: 118 LRRDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
+RRDFTIN+LY + DYVGGLNDL I+ IGD R ED +R+LR RF +
Sbjct: 188 MRRDFTINSLYYGINDFSLRDYVGGLNDLETGVIRLIGDPETRYREDPVRMLRAIRFASK 247
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I D + L + R++ E KLL+ + + +F+ +F
Sbjct: 248 LNM-TISEDTAEPISRLAFLLSHIPPARLFEESLKLLQTGQGYSTYKRLREYHLFQPLFP 306
Query: 237 DVQ-----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS----- 280
V+ E L+Q+ + + + +++ F ++ + +
Sbjct: 307 LVERYFTANNDSPMEHMLNQVLKNTDYRLQNDKRVNPAFLFAAMLWYPLIEHAEKLSQES 366
Query: 281 -------MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333
A + + + I+ +L +G +
Sbjct: 367 GLTYYDSFALAMNDILDEQCQSIAIPKRLTTIMRDIWQLQLRLPRRHGKRANKLMEHPKF 426
Query: 334 ALHYNNLTHQDTCFILQVLSDIIHW 358
Y+ L + L D+ HW
Sbjct: 427 RAAYDLLELRANVENRNELKDLAHW 451
>gi|104783677|ref|YP_610175.1| poly(A) polymerase I (PAP) [Pseudomonas entomophila L48]
gi|95112664|emb|CAK17392.1| poly(A) polymerase I (PAP) [Pseudomonas entomophila L48]
Length = 464
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 63/240 (26%), Positives = 107/240 (44%), Gaps = 19/240 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ I+ L ++ +VGG VRD L+ ++ +D D+AT+ P++V F R
Sbjct: 38 FSRHAVGIVERLQAAGYQAYLVGGCVRDLLLGITPKDFDVATSATPEQVRAEFRNARI-- 95
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADS 117
+ + + ++ ++ T R+ + GR + + D+
Sbjct: 96 --IGRRFKLVHVHFGREIIEVATFRAPHSDEDQADSHRSSHNASGRILRDNVYGTLEEDA 153
Query: 118 LRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINALY D + I DY G++D+RNR ++ IGD HR ED +R+LR RF A
Sbjct: 154 QRRDFTINALYYDPVSERILDYANGVHDIRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAK 213
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + K L+ + R++ E KL + + +F+ +F
Sbjct: 214 LDF-GIEKHTVAPIRKLAPMLRDIPPARLFEESLKLFLNGQGAMTFEMLVDLELFEPLFP 272
>gi|289805479|ref|ZP_06536108.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. AG3]
Length = 213
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 17/182 (9%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 34 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 209
Query: 179 EK 180
+
Sbjct: 210 MR 211
>gi|289665247|ref|ZP_06486828.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 455
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 61/235 (25%), Positives = 107/235 (45%), Gaps = 14/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + + +VGGAVRD L+ +D D+AT+ P+ V +F R
Sbjct: 39 SPNALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALFRNCRL--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------TDGRYAKVVFTRDWKADSLRRDFT 123
+ ++ ++ ++ T R++ +GR + + D++RRDFT
Sbjct: 96 -IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIEDDAIRRDFT 154
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DY GG D++ R +K IGD R ED +R+LR R A I
Sbjct: 155 CNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLAAKLDF-EI 213
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
++ + L + R++ EI KL + + +++ + G+F +F +
Sbjct: 214 EAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVSSFEGLERYGLFGALFPE 268
>gi|253577530|ref|ZP_04854843.1| polynucleotide adenylyltransferase region [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251843070|gb|EES71105.1| polynucleotide adenylyltransferase region [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 202
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 63/169 (37%), Positives = 92/169 (54%), Gaps = 6/169 (3%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
+L +L G ++ VGG VRD LM V D+DIAT+ PD V+R+F + IPT I
Sbjct: 31 ERVLRILRDGGHQAFFVGGCVRDELMGRPVHDMDIATSAKPDEVVRLFE----RTIPTGI 86
Query: 76 SYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+GT+ ++ F++TT R D R V F D RRDFT+NA+ +G
Sbjct: 87 QHGTVTVMMGDHAFEVTTFRKESDYADFRRPTSVEFVDAVTEDLRRRDFTMNAIARGLEG 146
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
++ID GG D+ I+ +GDA R ED LR++R RF + +G + +
Sbjct: 147 ELIDPFGGRMDIERGLIRCVGDAKERFAEDALRMMRAVRFASTFGFRPV 195
>gi|238754483|ref|ZP_04615838.1| Poly(A) polymerase [Yersinia ruckeri ATCC 29473]
gi|238707312|gb|EEP99674.1| Poly(A) polymerase [Yersinia ruckeri ATCC 29473]
Length = 467
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 70/369 (18%), Positives = 136/369 (36%), Gaps = 29/369 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 44 SDNALKVLYRLNKSGFEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL--- 100
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ ++ + ++ T R G + + D
Sbjct: 101 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQQPESNDKNSSQQAQNGMLLRDNIFGSIEED 159
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 160 AQRRDFTINSLYYGISDFALRDYTGGLRDLKQGIIRLIGDPEVRYREDPVRMLRAVRFAA 219
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
I + + L+ + R++ E KLL++ + + +F+ +F
Sbjct: 220 KLDM-TISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 278
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + ++++ + + + D + L + ++ A+K +
Sbjct: 279 PLIARNFTEHNDSPMERILIQVLKNTDYRLQNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 338
Query: 289 REIRYFLISFFNCN-FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + I K + + +L++ +
Sbjct: 339 SGLAYYDAFALAMNDILDEECRSLAIPKRITALVRDIWLLQLRLSRRQGKRAHKLMEHPK 398
Query: 348 ILQVLSDII 356
+
Sbjct: 399 FRAAYDLLA 407
>gi|238759902|ref|ZP_04621057.1| Poly(A) polymerase [Yersinia aldovae ATCC 35236]
gi|238701886|gb|EEP94448.1| Poly(A) polymerase [Yersinia aldovae ATCC 35236]
Length = 448
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 67/369 (18%), Positives = 134/369 (36%), Gaps = 29/369 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 25 SDNALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL--- 81
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---------------KAD 116
+ ++ + ++ T R + + D
Sbjct: 82 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQPAEDSDKNSSQQAQNGMLLRDNIFGTIEDD 140
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IG R ED +R+LR RF A
Sbjct: 141 AQRRDFTINSLYYGISDFALRDYTGGLRDLKAGIIRLIGSPETRYREDPVRMLRAVRFAA 200
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ + + L+ + R++ E KLL++ + + +F+ +F
Sbjct: 201 KLDM-ALSPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 259
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + ++++ + + D + L + ++ A+K +
Sbjct: 260 PLIARHFTEEHDSPMERILEQVLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 319
Query: 289 REIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + I K + + +L++ +
Sbjct: 320 SGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPK 379
Query: 348 ILQVLSDII 356
++
Sbjct: 380 FRAAYDLLL 388
>gi|332995335|gb|AEF05390.1| poly(A) polymerase I [Alteromonas sp. SN2]
Length = 438
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 74/412 (17%), Positives = 142/412 (34%), Gaps = 40/412 (9%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LN +S +VGG VRD LM +D D+AT P+++ +F R
Sbjct: 14 SPNALKVMYRLNGAGFESYLVGGCVRDILMGHEPKDFDVATNATPEQIKGLFRNCRL--- 70
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR------------------DW 113
+ I+ ++ ++ T R + +V +
Sbjct: 71 -IGRRFRLAHIVFGREVIEVATFRGHHSEEPEAKEVPKNKAVSKRDAHGQLVRDNVFGSI 129
Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
+ D+ RRDFT NA+Y V D+ GL + R ++ IGD R ED +R+LR R
Sbjct: 130 EEDAERRDFTFNAMYYSVADFTVKDFANGLEAIEKREVRLIGDPEVRYREDPVRMLRAVR 189
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
F I D + L + + R++ E KL + + + G+
Sbjct: 190 FATKLSM-RISDDTAAPIKQLASLLNNIPAARLFEETLKLFLSGQGEKTFLMLREYGLIA 248
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
+F + D+ S+ ++ + D + ++ + L R
Sbjct: 249 PLFPQLAPFIEDENSREMQFVRKVLQNTDERINNDQRVTPAFLYAAL--LWYPLEERAQI 306
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
S + + S I K + + + + L + Q+L
Sbjct: 307 MQAESGLSAHDAFNLASTEVIAKQTQRIMIPKRFSTVIRDIWILQQRLPKRFGRRAFQLL 366
Query: 353 SDIIHWKKPLFP-----LTGDDVVKY--------GIPPGKKVGNILVHCKQE 391
+ F + G +++ PGK+ +L +++
Sbjct: 367 THPKFRAGYDFLLVRGQVEGGALLELAQWWTHFQHGEPGKQ-KKMLNDLRRQ 417
>gi|119468903|ref|ZP_01611928.1| poly(A) polymerase I [Alteromonadales bacterium TW-7]
gi|119447555|gb|EAW28822.1| poly(A) polymerase I [Alteromonadales bacterium TW-7]
Length = 475
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 18/244 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ I +L L G + +VGG +RD L+ +D D+ T PD+V ++F R
Sbjct: 57 FSPNAIKVLYRLKDGGFDAYLVGGCIRDILLGQQPKDFDVVTNATPDQVKKLFRNCRL-- 114
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD------------WKADSL 118
+ I+ ++ ++ T+R ++ + + D+
Sbjct: 115 --IGRRFRLAHIVFGREIIEVATMRGHHEAPESKNQISQSSTEGQLLRDNVFGSIEEDAE 172
Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDF+INALY + DY GL ++ + I+ IGD R ED +R+LR RF
Sbjct: 173 RRDFSINALYYSINDFSIHDYANGLAAIKAKQIELIGDPETRYREDPVRMLRAVRFATKL 232
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+I + + L + R++ E+ KL + + G+F+ +F
Sbjct: 233 DM-SIAPNSEKPISELASLLDNIPPARLFEEVLKLFLNGKAEANFLMLRQYGLFRALFPA 291
Query: 238 VQEI 241
+ +I
Sbjct: 292 LDKI 295
>gi|34497087|ref|NP_901302.1| polynucleotide adenylyltransferase [Chromobacterium violaceum ATCC
12472]
gi|34102944|gb|AAQ59308.1| polynucleotide adenylyltransferase [Chromobacterium violaceum ATCC
12472]
Length = 450
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 69/353 (19%), Positives = 135/353 (38%), Gaps = 15/353 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + S L + + +VGGAVRD ++ +S +D D+AT P++V +F ++R
Sbjct: 39 AALRVTSRLQEAGFSAFVVGGAVRDLMLGVSPKDFDVATNATPEQVHHLFRRSRI----I 94
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R D GR + D+ RRDFT+NAL+
Sbjct: 95 GRRFRIVHVMMGPETIEVTTFRGGSVDDTNETGRIMADNSFGSQEEDAHRRDFTVNALFY 154
Query: 130 DQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + IDY G+ DL + + IG R ED +R+LR R A G ID D
Sbjct: 155 DPSDETVIDYHHGVKDLHAKKLVMIGQPARRYQEDPVRMLRAVRLAAKLGF-EIDEDTKK 213
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-----SL 243
LK R++ E+ KLL + + + + G+ + +F + +
Sbjct: 214 PIRAHAHLLKKEPPARLFDELLKLLMSGHAYACLKKLREEGLARGVFPLLDAVIDDKGGE 273
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
D ++ + D + L++ + + ++ E + +
Sbjct: 274 DAFLKLSLDNTDARLRADKPISVGFLLATLLWRQVDQGWQRRREAGEKSLPALLDAISDV 333
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ + I + F + ++ + + + +
Sbjct: 334 ENEQDNDFAIPRRFSVTMREIWTLQARFDSRTGARPYRFLEQPRFRAAYDFLA 386
>gi|114332256|ref|YP_748478.1| poly(A) polymerase [Nitrosomonas eutropha C91]
gi|114309270|gb|ABI60513.1| poly(A) polymerase [Nitrosomonas eutropha C91]
Length = 462
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 83/406 (20%), Positives = 148/406 (36%), Gaps = 37/406 (9%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
+ + L + + IVGGAVRD L+ L +D DI T P+ V IF +R
Sbjct: 44 LKVALTLQQAGYSAYIVGGAVRDLLLGLKPKDYDIVTDATPEEVRAIFRHSRI----IGR 99
Query: 76 SYGTIKIICRKKYFDITTLRS--------------DLITDGRYAKVVFTRDWKADSLRRD 121
+ + ++ + + +++T R + GR F + D RRD
Sbjct: 100 RFRLVHVMSKGETVEVSTFRGKAADDLIQSDKECAYIDATGRLLHDNFFGSQEEDVRRRD 159
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINAL+ + ++IDY+ G D+ + + IGD R ED +R+LR R A G +
Sbjct: 160 FTINALFYNPATEEIIDYLSGFEDVMAKRLNIIGDPEQRYREDPVRMLRAVRLAAKLGIQ 219
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
ID L + + R++ E+ KLL + + L A++ + G+ + +
Sbjct: 220 -IDDRTAAPIGDLAPLLLNVPAARLFDEMLKLLFSGHALTAVIDLRTRGLHHGLLPMLDV 278
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
I L + + D +R +S + L + ++ I
Sbjct: 279 ILEQPLGE--RFISLALKNTDERVRQGKPVSPGFLFAALLWHEVLAVWN------IHLKA 330
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
N L + + ++ I + + +L + + +
Sbjct: 331 GEKNIPALLHRAMGDVLAAQRRRLAIPRRHDGVIYDIWSLQPRFLARAGR--KPFRLLEH 388
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
P FP D + G I Q W +F+ +
Sbjct: 389 PHFP-AAYDFMLLRCKSG----EIDEELGQWW--QTFKNTDNAARE 427
>gi|294670147|ref|ZP_06735072.1| poly(A) polymerase [Neisseria elongata subsp. glycolytica ATCC
29315]
gi|291308074|gb|EFE49317.1| poly(A) polymerase [Neisseria elongata subsp. glycolytica ATCC
29315]
Length = 455
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++S L + ++ +VGGAVRD L+ +D D+AT P+ V +F ++R
Sbjct: 37 AAEKVVSRLQQAGYEAYVVGGAVRDLLIGAEPKDFDVATNATPEEVRAVFRRSRI----I 92
Query: 74 SISYGTIKIICRKKYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K D+ RRDFT NALY
Sbjct: 93 GRRFRIVHVMVGPETIEVTTFRGGGKAVQNEQGRIMKDNTYGTLAEDAGRRDFTCNALYF 152
Query: 130 DQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D +G++ID+ G+ D++ R + IGD R ED +RILR R G ++
Sbjct: 153 DPVKGEIIDFHNGVEDVKARRLVMIGDPAERYQEDPVRILRAVRLAGKLGF-TVEERTAA 211
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
K LK R++ EI KLL + + + GI I + +
Sbjct: 212 PIAKYAGRLKEEPPARLFDEIMKLLFSGYARRCLDQFHTLGIDTPIHPLLDAL 264
>gi|307719927|ref|YP_003891067.1| Polynucleotide adenylyltransferase region [Sulfurimonas
autotrophica DSM 16294]
gi|306978020|gb|ADN08055.1| Polynucleotide adenylyltransferase region [Sulfurimonas
autotrophica DSM 16294]
Length = 412
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 88/415 (21%), Positives = 158/415 (38%), Gaps = 22/415 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT--TILPDRVMRIFSKTRYKV 70
L I + L K K IVGG +RD ++N+ DIDI D V I + V
Sbjct: 6 ESLDTIFNKLYKHNIKPVIVGGYIRDVILNIPSNDIDIELYGIASLDEVEHILQEFGD-V 64
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINA 126
S+G K++ D + R D + T D +K + RRDFTINA
Sbjct: 65 NSVGKSFGVCKLLYNNLDLDFSLPRQDNKIASGHQGFKITVDTNLDFKTAASRRDFTINA 124
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDS 184
+ D + K I + ++ I + + ED LR+LR F + +
Sbjct: 125 IGYDVKNKKILDPYHGREDLDKKILKA-VDNEKFKEDPLRVLRAVVFASRFDMKLDKSLE 183
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN--GGIFKEIFLDVQEIS 242
I+ K ++ LL++ NP + + F + F + E
Sbjct: 184 FTCKHMIQNKLLNELPKERIFQEIKKLLLKSNNPSCGFYLLKDLGAFSFFQEFNTLDEKE 243
Query: 243 LDQLSQVIEAEQVFEWKIDS---LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
++ ++ + F+ D +L V+ S + + + + I + +
Sbjct: 244 YAEILNALKKLKTFQITSDKEFVILALAVITSKFSDIQTQTFLNRITNEKIIIEKVFTLH 303
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
NFN ++L+ +I L K L + + ++L+ +
Sbjct: 304 QINFNLESLNDYDIYTLARKINIKFYSHYLHV------TQNKKEKIEYLLKKAKKMSVLH 357
Query: 360 KPLFP-LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+P+ P + G D++K G+ P K+ IL + Q I ++F+ L L + L++
Sbjct: 358 QPIPPLIKGKDLIKLGLQPSKEFSKILEYTYQAQIRNAFKDKPSALSWLKKNLLS 412
>gi|25497051|pir||C85498 poly(A) polymerase I [imported] - Escherichia coli (strain O157:H7,
substrain EDL933)
gi|12512861|gb|AAG54447.1|AE005190_9 poly(A) polymerase I [Escherichia coli O157:H7 str. EDL933]
Length = 454
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 132/394 (33%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK + +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEXWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268
Query: 239 ------------------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
++ L + + E +
Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ + + I L + + + K + +
Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + +++ + P
Sbjct: 389 AYDLLALRAEVERNAELQRLVKWWGEFQVSAPPD 422
>gi|186680817|ref|YP_001864013.1| polynucleotide adenylyltransferase region [Nostoc punctiforme PCC
73102]
gi|186463269|gb|ACC79070.1| Polynucleotide adenylyltransferase region [Nostoc punctiforme PCC
73102]
Length = 898
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 76/446 (17%), Positives = 141/446 (31%), Gaps = 44/446 (9%)
Query: 5 VQHKWFHDSDLINILSLL-------NKGEDKSCIVGGAVRDSLMNLS-----VQDIDIAT 52
+ + + LL K +VGGAVRD L+ + ++DID+
Sbjct: 452 INLPQLQNKLAPQLWQLLTIASQEAEKRGWHLYLVGGAVRDLLLAKTAGSLMIKDIDLVV 511
Query: 53 TIL--------PDRVMRIFSKTR-YKVIPTSISYGTIKIICRKK------YFDITTLRSD 97
+ + + + ++ T ++ K + DI T R++
Sbjct: 512 DGFHKSADVGAGVELAKALQQLYPAARLEIHGAFQTAALLWHKDPELDSLWVDIATARTE 571
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFI 153
V + D RRDFTINA+ + G+++D+ GGL DL+ + I+ +
Sbjct: 572 FYPYPAANPEVEASSIRQDLYRRDFTINAIALRLTSPRSGELLDFFGGLLDLQAKQIRVL 631
Query: 154 GDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS------ 207
+ +ED RI R RF +G + G+ +S+
Sbjct: 632 --YANSFIEDPTRIYRGVRFAVRFGFEIEPQTEEFIRYAINSGVYDRTSQENTKTPALQT 689
Query: 208 ----EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
E+ +LEA +A+ + N G + I ++ + + + +
Sbjct: 690 RLKTELKHILEAPYWKSALQLLDNLGALQCIHPTLKLDGSLLRQLRLLERCLRRFDAEQT 749
Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
L + + + N Q + E
Sbjct: 750 LIHWQMRLEALIAHLAPEYRVKVAKNLQLQEDSILRLKNLVQSFSQVIECLPTLQRPSQI 809
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383
V + + L L + Q+ + W L G+D+ K G PG
Sbjct: 810 VQLLRQYDLPILILIALQSPRSLR-HQIWEYLTVWANVQPLLNGNDLKKLGYKPGPLYRQ 868
Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLR 409
IL ++ + E L +
Sbjct: 869 ILDDVVAATLDGVIKDRTEAEEFLAQ 894
>gi|167040202|ref|YP_001663187.1| polynucleotide adenylyltransferase region [Thermoanaerobacter sp.
X514]
gi|300914286|ref|ZP_07131602.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter sp.
X561]
gi|307724478|ref|YP_003904229.1| polynucleotide adenylyltransferase region [Thermoanaerobacter sp.
X513]
gi|166854442|gb|ABY92851.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter sp.
X514]
gi|300889221|gb|EFK84367.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter sp.
X561]
gi|307581539|gb|ADN54938.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter sp.
X513]
Length = 388
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 71/394 (18%), Positives = 133/394 (33%), Gaps = 31/394 (7%)
Query: 14 DLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
DLI +L ++ K + KS IVGG VRD L+ + DID+ + I
Sbjct: 9 DLIKLLKEISSKTKIKSYIVGGVVRDFLLGVKNLDIDVVVEGDGIKFAYTLLSYLKGDIV 68
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
++ T + D+ + R + + + D RRDFTIN L D
Sbjct: 69 VYEAFRTATLSYDSISIDVISARKEYYERPAALPTIEFSNIYDDMARRDFTINTLAYDVI 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ I + + + ++D RI R R+ Y I+ +
Sbjct: 129 EEKILDYFNGLEDLKKGFIRVLHPK-SFIDDPTRIFRAIRYATRYSF-EIEEKTHNLMKE 186
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + +++LS++RI +EI +L+ I + + GI K IF + +
Sbjct: 187 SIENIRLLSADRIRNEIFLILKESKVKEMIEKLISYGIDKVIFDGIT----LNTQNLDTV 242
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ E ++ L + D I + +
Sbjct: 243 DVNLEVELYRFLVLFYYLKESDINKIEKRL----------------------RVNKIYLK 280
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL--SDIIHWKKPLFPLTGDDV 370
K +++ I T ++ ++V+ K + G D+
Sbjct: 281 ALKDLVFLREQLNCQNKNIRKIRETIEETKEEVLRAIEVMEGEKAEKIIKGKLTVKGKDI 340
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
G+PP G ++ + + IN E++
Sbjct: 341 KNLGLPPSPLYGELMDNVFEAKINGIIATRDEEI 374
>gi|325276181|ref|ZP_08141985.1| poly(A) polymerase [Pseudomonas sp. TJI-51]
gi|324098690|gb|EGB96732.1| poly(A) polymerase [Pseudomonas sp. TJI-51]
Length = 462
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 19/240 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R
Sbjct: 38 FSRHAVNIVERLQAAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARI-- 95
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADS 117
+ + + ++ ++ T R+ D GR + + D+
Sbjct: 96 --IGRRFKLVHVHFGREIIEVATFRAPHTEDDQNDSHRSSHNASGRILRDNVYGTLEEDA 153
Query: 118 LRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINALY D + I DY G++D+RNR ++ IGD HR ED +R+LR RF A
Sbjct: 154 QRRDFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAK 213
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + L+ + R++ E KL + A + + +F+ +F
Sbjct: 214 LDF-GIEKHTFKPIRELAPLLREIPPARLFEESLKLFLSGQGAIAFEMLVDLELFEPLFP 272
>gi|289667258|ref|ZP_06488333.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 455
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 14/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + + +VGGAVRD L+ +D D+AT+ P+ V +F R
Sbjct: 39 SPNALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALFRNCRL--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------TDGRYAKVVFTRDWKADSLRRDFT 123
+ ++ ++ ++ T R++ +GR + + D++RRDFT
Sbjct: 96 -IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIEDDAIRRDFT 154
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DY GG D++ R +K IGDA R ED +R+LR R A I
Sbjct: 155 CNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDAELRYQEDPVRMLRAVRLAAKLDF-EI 213
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
++ + L + R++ EI KL + + +++ + G+F +F +
Sbjct: 214 EAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVSSFEGLERYGLFGALFPE 268
>gi|153997558|ref|ZP_02022658.1| poly(A) polymerase [Yersinia pestis CA88-4125]
gi|149289195|gb|EDM39275.1| poly(A) polymerase [Yersinia pestis CA88-4125]
Length = 502
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 70/369 (18%), Positives = 136/369 (36%), Gaps = 29/369 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 79 SDNALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL--- 135
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ ++ + ++ T R G + + D
Sbjct: 136 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDD 194
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 195 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAA 254
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+I + + L+ + R++ E KLL++ + + +F+ +F
Sbjct: 255 KLDM-SISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 313
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + ++++ + D + L + ++ A+K +
Sbjct: 314 PLIARNFTEQHDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 373
Query: 289 REIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + I K + + +L++ +
Sbjct: 374 SGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPK 433
Query: 348 ILQVLSDII 356
++
Sbjct: 434 FRAAYDLLL 442
>gi|212711310|ref|ZP_03319438.1| hypothetical protein PROVALCAL_02382 [Providencia alcalifaciens DSM
30120]
gi|212686039|gb|EEB45567.1| hypothetical protein PROVALCAL_02382 [Providencia alcalifaciens DSM
30120]
Length = 502
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 72/366 (19%), Positives = 138/366 (37%), Gaps = 26/366 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T P+++ ++F R
Sbjct: 81 SDNALKVLYRLNKNGYEAYLVGGGVRDLLLGQKPKDFDITTNATPEQIRKLFRNCRL--- 137
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R +G + + D++R
Sbjct: 138 -VGRRFRLAHIMFGPEIIEVATFRGHHDQEVDDKNLSSQAQNGMLLRDNIFGSIEEDAIR 196
Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+N+LY + V DYV GL DL++ I+ IGD R ED +R++R RF
Sbjct: 197 RDFTVNSLYYNIDDFSVRDYVNGLQDLKDGVIRLIGDPETRYREDPVRMIRAVRFACKLN 256
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-- 236
I+ + L + S R++ E KLL+A + +F+++F
Sbjct: 257 M-RIELKTAEPIHRLAPLLGEIPSARLFEESLKLLQAGYGYATYKMLNQYHLFEQLFPVI 315
Query: 237 -----DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291
+ + ++++ + + F K D + L + + A+K + +
Sbjct: 316 ASRFTENGDSPMEKIIEQVLKNTDFRLKNDKRVNPAFLFAAMLWYPVTEHAEKLAQEGGL 375
Query: 292 RYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
Y+ N + I K + + +L++ +
Sbjct: 376 AYYDAFALAMNDVLDEQCRSIAIPKRITTTMRDIWMLQLRLPRRQGRRANKLMEHPKFRA 435
Query: 351 VLSDII 356
+
Sbjct: 436 AFDLLE 441
>gi|238785058|ref|ZP_04629054.1| Poly(A) polymerase [Yersinia bercovieri ATCC 43970]
gi|238714030|gb|EEQ06046.1| Poly(A) polymerase [Yersinia bercovieri ATCC 43970]
Length = 473
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 70/369 (18%), Positives = 134/369 (36%), Gaps = 29/369 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 50 SDNALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL--- 106
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ ++ + ++ T R G + + D
Sbjct: 107 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQALNGMLLRDNIFGTIEDD 165
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 166 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAA 225
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
I + + L+ + R++ E KLL++ + + +F+ +F
Sbjct: 226 KLDM-TISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 284
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + ++++ + D + L + ++ A+K +
Sbjct: 285 PLIARNFTEQHDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 344
Query: 289 REIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + I K + + +L++ +
Sbjct: 345 SGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPK 404
Query: 348 ILQVLSDII 356
+
Sbjct: 405 FRAAYDLLA 413
>gi|317046958|ref|YP_004114606.1| poly(A) polymerase [Pantoea sp. At-9b]
gi|316948575|gb|ADU68050.1| poly(A) polymerase [Pantoea sp. At-9b]
Length = 478
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 63/242 (26%), Positives = 102/242 (42%), Gaps = 20/242 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T P+++ ++F R
Sbjct: 54 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPEQMRKLFRNCRL--- 110
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--------------WKADS 117
+ ++ + ++ T R D ++ + D+
Sbjct: 111 -VGRRFRLAHVMFGPEVIEVATFRGHHQMDEGEEDRNSSQRGQNGMLLRDNIFGSIEDDA 169
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRD TIN+LY V DYVGGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 170 QRRDLTINSLYYSVADFTVRDYVGGLQDLQQGIIRLIGDPETRYREDPVRMLRVVRFAAK 229
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
E I + + L + R++ E KLL+A M +F+ +F
Sbjct: 230 L-EMRIAPETAEPIPRLATLLHDIPPARLFEESLKLLQAGYGYRTYQMMREYQLFQPLFP 288
Query: 237 DV 238
+
Sbjct: 289 TL 290
>gi|77461030|ref|YP_350537.1| Poly(A) polymerase, PcnB [Pseudomonas fluorescens Pf0-1]
gi|77385033|gb|ABA76546.1| putative polynucleotide adenylyltransferase [Pseudomonas
fluorescens Pf0-1]
Length = 466
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD L+ ++ +D D+AT+ P++V F R
Sbjct: 42 AVNIVERLQGAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARI----IG 97
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ + GR + + D+ RR
Sbjct: 98 RRFKLVHIHFGREIIEVATFRANHPQNEDDEDSNQSSRNESGRILRDNVYGTLEEDAQRR 157
Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D + I DY G++D+RN I+ IGD R ED +R+LR RF A
Sbjct: 158 DFTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNF 217
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + + L+ + S R++ E+ KL + + + + +F +F
Sbjct: 218 -GIEKHTVQPIRELAPMLREIPSARLFEEVLKLFLSGHGAITFEMLVDLQLFAPLFP 273
>gi|74189230|dbj|BAE22664.1| unnamed protein product [Mus musculus]
Length = 215
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 68/164 (41%), Positives = 98/164 (59%), Gaps = 1/164 (0%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QD+D ATT P ++ +F +
Sbjct: 40 LFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNKGEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
G + DY G DL+N+ ++F+G A RI EDYLRILR+FR
Sbjct: 160 LGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFR 203
>gi|22124701|ref|NP_668124.1| poly(A) polymerase I [Yersinia pestis KIM 10]
gi|108808891|ref|YP_652807.1| poly(A) polymerase I [Yersinia pestis Antiqua]
gi|108810855|ref|YP_646622.1| poly(A) polymerase I [Yersinia pestis Nepal516]
gi|145600216|ref|YP_001164292.1| poly(A) polymerase I [Yersinia pestis Pestoides F]
gi|153948549|ref|YP_001402297.1| poly(A) polymerase I [Yersinia pseudotuberculosis IP 31758]
gi|165936780|ref|ZP_02225347.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. IP275]
gi|170025685|ref|YP_001722190.1| poly(A) polymerase I [Yersinia pseudotuberculosis YPIII]
gi|218930416|ref|YP_002348291.1| poly(A) polymerase I [Yersinia pestis CO92]
gi|270489241|ref|ZP_06206315.1| polynucleotide adenylyltransferase [Yersinia pestis KIM D27]
gi|21957515|gb|AAM84375.1|AE013681_5 poly(A) polymerase I [Yersinia pestis KIM 10]
gi|108774503|gb|ABG17022.1| poly(A) polymerase [Yersinia pestis Nepal516]
gi|108780804|gb|ABG14862.1| poly(A) polymerase [Yersinia pestis Antiqua]
gi|145211912|gb|ABP41319.1| poly(A) polymerase [Yersinia pestis Pestoides F]
gi|152960044|gb|ABS47505.1| poly(A) polymerase [Yersinia pseudotuberculosis IP 31758]
gi|165915429|gb|EDR34039.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. IP275]
gi|169752219|gb|ACA69737.1| poly(A) polymerase [Yersinia pseudotuberculosis YPIII]
gi|262363166|gb|ACY59887.1| poly(A) polymerase I [Yersinia pestis D106004]
gi|270337745|gb|EFA48522.1| polynucleotide adenylyltransferase [Yersinia pestis KIM D27]
Length = 491
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 70/369 (18%), Positives = 136/369 (36%), Gaps = 29/369 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 68 SDNALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL--- 124
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ ++ + ++ T R G + + D
Sbjct: 125 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDD 183
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 184 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAA 243
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+I + + L+ + R++ E KLL++ + + +F+ +F
Sbjct: 244 KLDM-SISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 302
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + ++++ + D + L + ++ A+K +
Sbjct: 303 PLIARNFTEQHDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 362
Query: 289 REIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + I K + + +L++ +
Sbjct: 363 SGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPK 422
Query: 348 ILQVLSDII 356
++
Sbjct: 423 FRAAYDLLL 431
>gi|253988289|ref|YP_003039645.1| poly(A) polymerase I [Photorhabdus asymbiotica subsp. asymbiotica
ATCC 43949]
gi|253779739|emb|CAQ82900.1| poly(A) polymerase [Photorhabdus asymbiotica]
Length = 523
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 79/385 (20%), Positives = 140/385 (36%), Gaps = 43/385 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK + +VGG VRD L+ +D DIAT P++V ++F R
Sbjct: 101 SENALKVLYRLNKSGFDAYLVGGGVRDLLLGTKPKDFDIATNATPEQVRKLFRNCRL--- 157
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--------------WKADS 117
+ I+ + ++ T R + ++ + D+
Sbjct: 158 -VGRRFRLAHIMFGPEVIEVATFRGPHEQTDANNEKNQSQQAQSGMLLRDNTFGSIEEDA 216
Query: 118 LRRDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
+RRDFTIN+LY + DYVGGLNDL I+ IGD R ED +R+LR RF +
Sbjct: 217 MRRDFTINSLYYGINDFSLRDYVGGLNDLETGVIRLIGDPETRYREDPVRMLRAIRFASK 276
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I D + L + R++ E KLL+ + + +F+ +F
Sbjct: 277 LNM-TISEDTAEPISRLAFLLSHIPPARLFEESLKLLQTGQGYSTYKRLREYHLFQPLFP 335
Query: 237 DVQ-----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS----- 280
V+ E L+Q+ + + + +++ F ++ + +
Sbjct: 336 LVERYFTANNDSPMEHMLNQVLKNTDYRLQNDKRVNPAFLFAAMLWYPLIEHAEKLSQES 395
Query: 281 -------MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333
A + + + I+ +L +G +
Sbjct: 396 GLTYYDSFALAMNDILDEQCQSIAIPKRLTTIMRDIWQLQLRLPRRHGKRANKLMEHPKF 455
Query: 334 ALHYNNLTHQDTCFILQVLSDIIHW 358
Y+ L + L D+ HW
Sbjct: 456 RAAYDLLELRANVENRNELKDLAHW 480
>gi|161760588|ref|YP_069273.2| poly(A) polymerase I [Yersinia pseudotuberculosis IP 32953]
gi|186894092|ref|YP_001871204.1| poly(A) polymerase I [Yersinia pseudotuberculosis PB1/+]
gi|186697118|gb|ACC87747.1| poly(A) polymerase [Yersinia pseudotuberculosis PB1/+]
Length = 488
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 70/369 (18%), Positives = 136/369 (36%), Gaps = 29/369 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 68 SDNALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL--- 124
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ ++ + ++ T R G + + D
Sbjct: 125 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDD 183
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 184 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAA 243
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+I + + L+ + R++ E KLL++ + + +F+ +F
Sbjct: 244 KLDM-SISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 302
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + ++++ + D + L + ++ A+K +
Sbjct: 303 PLIARNFTEQHDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 362
Query: 289 REIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + I K + + +L++ +
Sbjct: 363 SGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPK 422
Query: 348 ILQVLSDII 356
++
Sbjct: 423 FRAAYDLLL 431
>gi|326391069|ref|ZP_08212616.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter
ethanolicus JW 200]
gi|325992854|gb|EGD51299.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter
ethanolicus JW 200]
Length = 388
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 72/394 (18%), Positives = 133/394 (33%), Gaps = 31/394 (7%)
Query: 14 DLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
DLI +L ++ K + KS IVGG VRD L+ + DID+ I I
Sbjct: 9 DLIKLLKEISLKTKIKSYIVGGVVRDFLLGVKNLDIDVVVEGDGIEFAYILLSYLKGDIV 68
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
++ T + D+ + R + + + D RRDFTIN L D
Sbjct: 69 VYEAFRTATLSYDGISIDVISARKEYYERPAALPTIEFSNIYDDMARRDFTINTLAYDVI 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ I + + + + ++D RI R R+ Y I+ +
Sbjct: 129 EEKILDYFNGLEDLKKGLIRVLHPK-SFIDDPTRIFRAIRYATRYSF-EIEEKTHNLMKE 186
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + +++LS++RI +EI +L+ I + I K IF + +
Sbjct: 187 SIENIRLLSADRIRNEIFLILKESKAKEMIDKLIYYSIDKVIFDGIT----LNTQHLDTV 242
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E ++ L + +D I + +
Sbjct: 243 YVNLEIELYRFLVLFYYLKEKDINEIEKRL----------------------RINKIYLK 280
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL--SDIIHWKKPLFPLTGDDV 370
K +++ I T ++ ++V+ K + G D+
Sbjct: 281 ALKDLVFLREQLNCQNKNIRKIRETIEETKEEVLKAIEVMEGEKAEKIIKGKLTVKGKDI 340
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
G+PPG G ++ + + IN E++
Sbjct: 341 ENLGLPPGSLYGELMDNVFEAKINGIIATRDEEI 374
>gi|183600088|ref|ZP_02961581.1| hypothetical protein PROSTU_03620 [Providencia stuartii ATCC 25827]
gi|188022373|gb|EDU60413.1| hypothetical protein PROSTU_03620 [Providencia stuartii ATCC 25827]
Length = 523
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 139/367 (37%), Gaps = 27/367 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T P+++ ++F R
Sbjct: 99 SDNALKVLYRLNKNGYEAYLVGGGVRDLLLGKKPKDFDITTNATPEQIRKLFRNCRL--- 155
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT-------------DGRYAKVVFTRDWKADSL 118
+ I+ + ++ T R +G + + D++
Sbjct: 156 -VGRRFRLAHIMFGPEVIEVATFRGHHDQIESEDKNRSQQAKNGMLLRDNIFGSIEEDAI 214
Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+N+LY + V DYVGGLNDL+ I+ IGD R ED +R+LR RF
Sbjct: 215 RRDFTVNSLYYNIDDFSVRDYVGGLNDLKAGIIRLIGDPETRYREDPVRMLRAVRFACKL 274
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
I+ + + L+ + S R++ E KLL+A + +F+++F
Sbjct: 275 DM-RIEPNTAQPIQRLAPLLREIPSARLFEESLKLLQAGQGYATYNMLKEYHLFEQLFPV 333
Query: 238 V-------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
+ + ++++ + F K D + L + + A+K S
Sbjct: 334 ISSRFTNNNDSPMEKIIDQVLKNTDFRLKNDKRVNPAFLFAVMLWYPVTEHAEKLSQEGG 393
Query: 291 IRYFLISFFNCN-FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
+ Y+ N + I K + +L++ +
Sbjct: 394 LAYYDAFALAMNDILDEQCRSIAIPKRITTTMRDIWQLQLRLPRRQGRRANKLMEHPKFR 453
Query: 350 QVLSDII 356
+
Sbjct: 454 AAFDLLE 460
>gi|256821580|ref|YP_003145543.1| poly(A) polymerase [Kangiella koreensis DSM 16069]
gi|256795119|gb|ACV25775.1| poly(A) polymerase [Kangiella koreensis DSM 16069]
Length = 456
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 12/232 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ +S +VGG VRD L+ L +D DIAT P+++ +F R
Sbjct: 42 SDNALKVLYRLSNAGYESFLVGGGVRDILLGLHPKDFDIATNATPEQIKELFRNCRI--- 98
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------GRYAKVVFTRDWKADSLRRDFTIN 125
+ I+ + ++ T R+ + G + D + D++RRDFTIN
Sbjct: 99 -IGRRFRLAHILFGRDVIEVATFRAHCDDNIQQAKEGMILRDNVYGDIEEDAIRRDFTIN 157
Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY + V D+ GL DLR R ++ IGD R ED +R+LR R I+
Sbjct: 158 ALYYNIKDFSVHDFCDGLADLRKRQLRMIGDPETRYREDPVRMLRAVRLACKLN-LTIEP 216
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ L + L+ + + R+W E KL A + G+F +F
Sbjct: 217 NTLKPVAELSHFLEQVPAARLWEEYRKLFLAGAAKLTFQKLREYGLFHALFP 268
>gi|188533006|ref|YP_001906803.1| poly(A) polymerase I [Erwinia tasmaniensis Et1/99]
gi|188028048|emb|CAO95905.1| Poly(A) polymerase [Erwinia tasmaniensis Et1/99]
Length = 483
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 59/298 (19%), Positives = 108/298 (36%), Gaps = 20/298 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R
Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQMRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL---------------ITDGRYAKVVFTRDWKAD 116
+ ++ + ++ T R +G + + D
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQAVDDRNSSQRDQNGMLLRDNIFGTIEDD 167
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRD TIN+LY V DYVGGL+DL+ I+ IGD R ED +R+LR RF A
Sbjct: 168 AQRRDLTINSLYYSVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFAA 227
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G A I + + L + +
Sbjct: 228 KLDMSIAAETGEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLEYQLFQPLFP 287
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
+ ++ S + + D+ + + ++ + + + + ++I
Sbjct: 288 TITRYVTEQGDSNMERMILLVLKNTDTRIHNQMRVNPAFLFAAMFWYPQLEMAQKIAQ 345
>gi|146308605|ref|YP_001189070.1| poly(A) polymerase [Pseudomonas mendocina ymp]
gi|145576806|gb|ABP86338.1| poly(A) polymerase [Pseudomonas mendocina ymp]
Length = 463
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 63/240 (26%), Positives = 111/240 (46%), Gaps = 20/240 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I+++ L K ++ +VGG VRD L+++ +D D+AT+ P++V F R
Sbjct: 39 SRHAISVVERLQKAGYQAYLVGGCVRDLLLDIDPKDFDVATSATPEQVRAEFRNARV--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--------------ITDGRYAKVVFTRDWKADS 117
+ + + ++ ++ T R++ GR + + D+
Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRANHPQGEEEENSNQAARHESGRILRDNVYGTLEDDA 154
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINALY D Q ++DY G++D+RN ++ IGD R LED +R+LR RF A
Sbjct: 155 QRRDFTINALYYDPTQEHILDYARGMHDVRNHLVRLIGDPEQRYLEDPVRMLRAVRFAAK 214
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+I+ + L+ + + R++ E+ KL A + +F ++F
Sbjct: 215 LDF-DIEKHSAAPIRRLAPMLRDIPAARLFDEVLKLFLAGYAEYTFDLLLEHDLFAQLFP 273
>gi|318607077|emb|CBY28575.1| poly(A) polymerase [Yersinia enterocolitica subsp. palearctica Y11]
gi|330859189|emb|CBX69540.1| poly(A) polymerase [Yersinia enterocolitica W22703]
Length = 478
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 69/368 (18%), Positives = 133/368 (36%), Gaps = 29/368 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 55 SDNALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL--- 111
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ ++ + ++ T R G + + D
Sbjct: 112 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQQTEDSDKNSSQQAQNGMLLRDNIFGTIEDD 170
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IG R ED +R+LR RF A
Sbjct: 171 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGSPETRYREDPVRMLRAVRFAA 230
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
I + + L + R++ E KLL++ + + +F+ +F
Sbjct: 231 KLDM-TISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 289
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + +++++ + D + L + ++ A+K +
Sbjct: 290 PLIARNFTEHHDSAMERILVQVLKNTDHRLHNDKRVNPAFLFAAMLWYPLIEHAQKLTQE 349
Query: 289 REIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + I K + + +L++ +
Sbjct: 350 SGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPK 409
Query: 348 ILQVLSDI 355
+
Sbjct: 410 FRAAYDLL 417
>gi|218767953|ref|YP_002342465.1| putative poly(A) polymerase [Neisseria meningitidis Z2491]
gi|121051961|emb|CAM08269.1| putative poly(A) polymerase [Neisseria meningitidis Z2491]
Length = 453
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGA+RD L+ + +D D+AT +P++V ++F ++R
Sbjct: 40 AAENVIRRLKGAGFQAYVVGGAIRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRI----V 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R G + +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-ELSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 267
>gi|304414040|ref|ZP_07395408.1| poly(A) polymerase I [Candidatus Regiella insecticola LSR1]
gi|304283254|gb|EFL91650.1| poly(A) polymerase I [Candidatus Regiella insecticola LSR1]
Length = 471
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 64/246 (26%), Positives = 105/246 (42%), Gaps = 21/246 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG+VRD L+ QD DIAT P++V ++F R
Sbjct: 52 SDNALKVLYRLNKSGYEAYLVGGSVRDLLLGKKPQDFDIATNATPEQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ I+ + ++ T R + G + + D
Sbjct: 109 -IGRRFRLAHIMFGRDVIEVATFRGHHEQELSKNSDKNASQQAQSGMLLRDNIFGSIEED 167
Query: 117 SLRRDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL+DL+ I+ IGD R ED +R+LR RF A
Sbjct: 168 AQRRDFTINSLYYGSSDFVLRDYCGGLHDLKQGVIRLIGDPEVRYREDPVRMLRAVRFAA 227
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
I + + L + R++ E KLL+ + + + +F+ +F
Sbjct: 228 KLDM-TISPETAEPIKRMASLLSDIPPARLFEESLKLLQGGYGYKSYLKLCEYQLFQPLF 286
Query: 236 LDVQEI 241
+
Sbjct: 287 PLISNH 292
>gi|162420585|ref|YP_001605569.1| poly(A) polymerase I [Yersinia pestis Angola]
gi|165925807|ref|ZP_02221639.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|166010184|ref|ZP_02231082.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166214122|ref|ZP_02240157.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. B42003004]
gi|167398734|ref|ZP_02304258.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167420762|ref|ZP_02312515.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423197|ref|ZP_02314950.1| poly(A) polymerase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229839037|ref|ZP_04459196.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229896516|ref|ZP_04511684.1| Poly(A) polymerase [Yersinia pestis Pestoides A]
gi|229899602|ref|ZP_04514743.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. India
195]
gi|229901064|ref|ZP_04516187.1| Poly(A) polymerase [Yersinia pestis Nepal516]
gi|294505105|ref|YP_003569167.1| poly(A) polymerase [Yersinia pestis Z176003]
gi|115349027|emb|CAL21988.1| poly(A) polymerase [Yersinia pestis CO92]
gi|162353400|gb|ABX87348.1| poly(A) polymerase [Yersinia pestis Angola]
gi|165922419|gb|EDR39596.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165991091|gb|EDR43392.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166204753|gb|EDR49233.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. B42003004]
gi|166961568|gb|EDR57589.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167051238|gb|EDR62646.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167057367|gb|EDR67113.1| poly(A) polymerase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229681789|gb|EEO77882.1| Poly(A) polymerase [Yersinia pestis Nepal516]
gi|229687094|gb|EEO79169.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. India
195]
gi|229695403|gb|EEO85450.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229700590|gb|EEO88621.1| Poly(A) polymerase [Yersinia pestis Pestoides A]
gi|294355564|gb|ADE65905.1| poly(A) polymerase [Yersinia pestis Z176003]
gi|320016600|gb|ADW00172.1| Poly(A) polymerase [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 440
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 70/369 (18%), Positives = 136/369 (36%), Gaps = 29/369 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 17 SDNALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ ++ + ++ T R G + + D
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDD 132
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 133 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAA 192
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+I + + L+ + R++ E KLL++ + + +F+ +F
Sbjct: 193 KLDM-SISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 251
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + ++++ + D + L + ++ A+K +
Sbjct: 252 PLIARNFTEQHDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 311
Query: 289 REIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + I K + + +L++ +
Sbjct: 312 SGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPK 371
Query: 348 ILQVLSDII 356
++
Sbjct: 372 FRAAYDLLL 380
>gi|238018594|ref|ZP_04599020.1| hypothetical protein VEIDISOL_00424 [Veillonella dispar ATCC 17748]
gi|237865065|gb|EEP66355.1| hypothetical protein VEIDISOL_00424 [Veillonella dispar ATCC 17748]
Length = 472
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 88/461 (19%), Positives = 161/461 (34%), Gaps = 74/461 (16%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + +
Sbjct: 3 EQANRILTVLEEAGYEAYIIGGAVRDILMHQKPHDFDIVTSARPDTVIEVLRGQDIQTTD 62
Query: 73 -TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALYA 129
S+G + K ++I T R++ + + + D LRRDFT+N +
Sbjct: 63 LVGKSFGVVVATLEGKQYEIATYRTERYGADSHRPEEIAYADTLEEDVLRRDFTVNGMAM 122
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
++ G+VID VGG D++++T++ IG+A R ED LR+ R RF A +
Sbjct: 123 NRFGEVIDLVGGRRDIKHKTLRTIGNAQQRFEEDALRLFRACRFVAKLDFLPTEDLLEAM 182
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE------ISL 243
KA + LS ER+ SE+++L+ + + + + V+ L
Sbjct: 183 P-KAFYRVPGLSLERVRSELDRLMLEPAVAKGLDVLVQSRLAECSCRVVENGVAREVPIL 241
Query: 244 DQLSQVIEAEQ----------------VFEWKIDSLLRFIVLISW--------------- 272
+L ++ Q V + D LR+ L+
Sbjct: 242 PELYHLVNLPQEKDFHEFDGWYHTLAVVSHTEPDLTLRWGALLHDVAKGMPTVRAVVNGR 301
Query: 273 --------QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL------SIPEIKKLFY 318
+ ++ + P+ + + + + +
Sbjct: 302 LTDRGHDTLGAEMTETLLTRLGYPKSFVRRVAWIVKNHMRFHYFVQNGEANEKKWIRKEA 361
Query: 319 LYGDKVMIAKLKIFL---------ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
G+ ++I + + T L + P+ D
Sbjct: 362 RSGEFRDSQIMRIAWEQLSKVCAADVLGCGKPYASTDGTLAFGECMADLSL-EMPIHTKD 420
Query: 370 V------VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
+ +K GKKVG L + + N + L
Sbjct: 421 LNYDERVIKL---AGKKVGEGLQYLLGQVQNGVIPNEPDAL 458
>gi|9971894|gb|AAG10456.1|AF279106_18 predicted poly(A) polymerase [uncultured marine gamma
proteobacterium EBAC31A08]
Length = 410
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 68/362 (18%), Positives = 127/362 (35%), Gaps = 21/362 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I+++ L K ++ +VGG VRD+L L +D DIAT P+++ + F +R
Sbjct: 8 SKFAISVVQDLQKNNFQAYLVGGCVRDALTGLEPKDFDIATNATPEQIRKTFKASRI--- 64
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYA----------KVVFTRDWKADSLRRD 121
+ + + R + ++ T RS + + + D RRD
Sbjct: 65 -IGKRFKLVHVFNRSELLEVATFRSGSDQEDGENIVTDSTGKILRDNNWGTLEQDCHRRD 123
Query: 122 FTINALYADQQGKVIDYVGGL-NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY K I+ + + I IGD R ED +R LR RF
Sbjct: 124 FTVNALYYCPVTKKIEDHNDGLKHIHKKVIVSIGDPQRRFEEDPVRSLRAIRFSNKLNF- 182
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
ID+ A L +S+ R++ E K+ + + + K + L
Sbjct: 183 KIDNLVKDAIYDKGHLLSGISNARLFDEFCKIFLNGMGEKNFEKLCSFHLNKYLILSDPS 242
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+ + + A D + + ++L + + + FF
Sbjct: 243 RNDFASNVMTHA---LRNTDDRVKNQQSITPGFLMAALLWPSLLKKCSKNGEINVRKFFR 299
Query: 301 CNF--NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
++ I I + F Y + + +LK+ + ++
Sbjct: 300 SMDGVLREQQKITAIPRKFSSYIKDIWVLQLKLHSRIGSQPYKTLRHPRFRAAYDFLLVR 359
Query: 359 KK 360
++
Sbjct: 360 ER 361
>gi|226328934|ref|ZP_03804452.1| hypothetical protein PROPEN_02836 [Proteus penneri ATCC 35198]
gi|225202120|gb|EEG84474.1| hypothetical protein PROPEN_02836 [Proteus penneri ATCC 35198]
Length = 473
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 77/406 (18%), Positives = 135/406 (33%), Gaps = 47/406 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN ++ +VGG VRD L+ +D DIAT P+ V R+F +R
Sbjct: 45 SDNALKVLYRLNNSGFQAYLVGGGVRDLLLGKKPKDFDIATNATPEDVRRLFRNSRL--- 101
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118
+ I+ + ++ T R G + + D++
Sbjct: 102 -VGRRFRLAHIMFGPEVIEVATFRGSHEDHEVSDNNQSQQAQSGMLLRDNIFGSIEEDAI 160
Query: 119 RRDFTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+N+LY + GGL DL+ I+ IGD R ED +R+LR RF +
Sbjct: 161 RRDFTLNSLYYGVDDFAVRDYVGGLADLKAGIIRLIGDPETRYREDPVRMLRAIRFASKL 220
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+ I + + L+ + S R++ E KLL+ M + + +F
Sbjct: 221 DMQ-IAPETAEPISRLAPLLRNIPSARLFEESLKLLQTGQGYKTYKLMCRHQLLEPLFPL 279
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+ A ++ E + R I I I +
Sbjct: 280 I-------------ASKMTEQHDTPMERMIDQILKNTDYRINKEMRVNPAFLFAAMLWYP 326
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL----- 352
S F + + ++ + + T +D + Q L
Sbjct: 327 LIEHAEKLVQESGLSYYDSFSMAMNDILDEQCRTIAIPKRITTTMRDIWLLQQRLPKRQG 386
Query: 353 -SDIIHWKKPLFPLTGD-DVVKY--GIPPGKKVGNILVHCKQEWIN 394
+ P F D+++ + L W +
Sbjct: 387 RRANKLLEHPKF--RAAFDLLELRANVQRNPD----LEALASWWAD 426
>gi|57234819|ref|YP_181154.1| polyA polymerase family protein [Dehalococcoides ethenogenes 195]
gi|57225267|gb|AAW40324.1| polyA polymerase family protein [Dehalococcoides ethenogenes 195]
Length = 418
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 82/388 (21%), Positives = 148/388 (38%), Gaps = 17/388 (4%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRV-MRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGG VRD L++ + +D D+ T R + T YK +G +
Sbjct: 36 LYLVGGLVRDCLLDKTPKDADLVITANAIRFGQDLLQGTSYKTTLHH-RFGNLSADINGF 94
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLN 143
DITT RS++ V D KAD RRDF INA+ G ++D GL
Sbjct: 95 KLDITTARSEVYPAPGKLPEVGAGDIKADLFRRDFKINAMAISLSQQNSGCLVDPYDGLT 154
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203
DL+ + + +D RI R R+ G +I ++ L + + + ++ ++
Sbjct: 155 DLKQGKLSVLHP--KSFQDDPSRIWRALRYSERLGF-DISAETLALLKRDMQLIPLIGAD 211
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
R+ EI +LE P N + G+ + V+ + EA +++ I +
Sbjct: 212 RLRYEIECVLEEAKPENIFLKAEETGVLRYSLPGVKADGWLV-GKFAEARKIYGTCIPRV 270
Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGD 322
+ + +L + +K ++ + + I L + N + Y
Sbjct: 271 IYYCLLSARLNKLQAENLVTGLNPGKYITGCLGDYRYLAENLPELEKTGLRPSHLYKILV 330
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVG 382
K + F N L Q+ + LS+I L G D++ G PG +
Sbjct: 331 KCRKEARQSFYIASDNPLVRQNISLFEEELSNI------KPHLKGADLIALGFTPGPAIQ 384
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRK 410
IL ++ +++ ++ R+
Sbjct: 385 TILRELLFLKLDGQLTSRADEIDYVKRR 412
>gi|51588364|emb|CAH19972.1| poly(A) polymerase I [Yersinia pseudotuberculosis IP 32953]
Length = 437
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 70/369 (18%), Positives = 136/369 (36%), Gaps = 29/369 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 17 SDNALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ ++ + ++ T R G + + D
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDD 132
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 133 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAA 192
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+I + + L+ + R++ E KLL++ + + +F+ +F
Sbjct: 193 KLDM-SISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 251
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + ++++ + D + L + ++ A+K +
Sbjct: 252 PLIARNFTEQHDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 311
Query: 289 REIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + I K + + +L++ +
Sbjct: 312 SGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPK 371
Query: 348 ILQVLSDII 356
++
Sbjct: 372 FRAAYDLLL 380
>gi|257455099|ref|ZP_05620337.1| poly(A) polymerase [Enhydrobacter aerosaccus SK60]
gi|257447432|gb|EEV22437.1| poly(A) polymerase [Enhydrobacter aerosaccus SK60]
Length = 742
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 70/350 (20%), Positives = 135/350 (38%), Gaps = 16/350 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ ++S L + ++ IVGG VRD+L+ L +D D T P+++ +F K +
Sbjct: 47 IKEVISTLTQAGFEAYIVGGGVRDALLGLKPKDFDAVTNATPNQIKEVFGK---RCRIIG 103
Query: 75 ISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + + ++ T R + + DG + D D +RRDF+INALY
Sbjct: 104 RRFQLCHVYSGRDMIEVATFRAPPKDNNHVTEDGMIMRDNVWGDIYQDVVRRDFSINALY 163
Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
V D+ GGL D+ NRTI+ +GD R+ ED +R+LR RF A ++
Sbjct: 164 YQPFDDIVYDFCGGLKDVENRTIRLLGDTQKRVEEDPVRLLRALRFKAKLQFDFDNALNQ 223
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG--GIFKEIFLDVQEISLDQ 245
+ + L +S R++ E K+ + + +++ + L
Sbjct: 224 QFNAQNWALLAQVSPHRLYDETQKMFTGGYLVPMLPLLFDYGAFSQLLFYPPTTVTPLLN 283
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ ++ K + F I W++ +L KK + + + + Q
Sbjct: 284 QVTINTDRRIGSGKSINPAFFYATILWENYLYLLDKFKKNTPFSDAQNQAANKVLDKQRQ 343
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
T + K + + + + ++ N + +
Sbjct: 344 HT----AMPKFAEQFIKDIWLMQPRLAQPRKKNLQKLFENPRFRAAYDFL 389
>gi|312963066|ref|ZP_07777551.1| poly(A) polymerase [Pseudomonas fluorescens WH6]
gi|311282577|gb|EFQ61173.1| poly(A) polymerase [Pseudomonas fluorescens WH6]
Length = 467
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD L+N++ +D D+AT+ P++V F R
Sbjct: 42 AVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQVRAEFRNARI----IG 97
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R+ + GR + + D+ RR
Sbjct: 98 RRFKLVHIHFGREIIEVATFRAGHPQNDEEEDTNQSSRNESGRILRDNVYGTLEEDAQRR 157
Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D + I DY G++D+RN I+ IGD R ED +R+LR RF A
Sbjct: 158 DFTINALYYDPVSERILDYANGVHDIRNNLIRLIGDPTQRYQEDPVRMLRAVRFAAKLNF 217
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + L+ + S R++ E+ KL + + + + +F +F
Sbjct: 218 -GIEKHTAAPIRELAPMLREIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFP 273
>gi|15836832|ref|NP_297520.1| polynucleotide adenyltransferase [Xylella fastidiosa 9a5c]
gi|9105036|gb|AAF83040.1|AE003876_5 polynucleotide adenyltransferase [Xylella fastidiosa 9a5c]
Length = 421
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 66/363 (18%), Positives = 139/363 (38%), Gaps = 16/363 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + + +VGGAVRD L+ +D D+AT P+++ ++F R
Sbjct: 18 SPNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRL--- 74
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT--------DGRYAKVVFTRDWKADSLRRDFT 123
+ ++ ++ ++ T R++ +GR + D+ RRDFT
Sbjct: 75 -IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFT 133
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DYVGG D+++R ++ IGD R ED +R+LR R G I
Sbjct: 134 CNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKLGF-EI 192
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
++ + L ++ R++ E+ KL + + + + + + G+ +F + +
Sbjct: 193 EAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLFPESAKA- 251
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ ++ +V + S + ++ + ++ + +
Sbjct: 252 -LRANRSGALRRVLIEGLHSTDKRVIKEEPVSPAFLFALLLWPGFCHALVTLQLQGVQPE 310
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
Q+ + + + L N + +L++L
Sbjct: 311 EAQRRAADRVTLHHLERVALPRRFSLPMQEIWLLQNRFISRQPKRVLRLLEHPRFRAAFD 370
Query: 363 FPL 365
F +
Sbjct: 371 FLV 373
>gi|226946294|ref|YP_002801367.1| polynucleotide adenylyltransferase PcnB [Azotobacter vinelandii DJ]
gi|226721221|gb|ACO80392.1| polynucleotide adenylyltransferase; PcnB [Azotobacter vinelandii
DJ]
Length = 463
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 21/241 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++++ L ++ +VGG VRD L+++ +D D+AT+ P++V F R
Sbjct: 38 SRHAVSVVERLQNAGYQAYVVGGCVRDLLLDIEPKDFDVATSATPEQVRAEFRNARV--- 94
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL---------------ITDGRYAKVVFTRDWKAD 116
+ + ++ ++ T R+ GR + + D
Sbjct: 95 -IGRRFKLAHVHFGREIIEVATFRAHHPDDEEDDEDNHLAMRHESGRILRDNVYGTLEED 153
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTINALY D +++DY G++D+RN ++ IGD R LED +R+LR RF A
Sbjct: 154 AQRRDFTINALYFDIAHDRILDYAHGVHDIRNHLVRLIGDPEQRYLEDPVRMLRAVRFAA 213
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+I+ + L+ + + R++ E+ KL + + + +F +F
Sbjct: 214 KLDF-DIEHHSAAPIRRLAPLLRDIPAPRLFDEVLKLFLSGYAEDTFELLLEYDLFAPLF 272
Query: 236 L 236
Sbjct: 273 P 273
>gi|88810481|ref|ZP_01125738.1| polyA polymerase [Nitrococcus mobilis Nb-231]
gi|88792111|gb|EAR23221.1| polyA polymerase [Nitrococcus mobilis Nb-231]
Length = 475
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 17/242 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK + +VGG VRD + +D D+AT P++V ++F R
Sbjct: 67 SRNALKVLYRLNKAGYAAYLVGGGVRDLSLGREPKDFDVATDARPEQVKQLFRNCRL--- 123
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI-----------TDGRYAKVVFTRDWKADSLRR 120
+ + + ++ T R+ +GR + + D+LRR
Sbjct: 124 -IGRRFRLAHVYFGSEIIEVATFRALQEAGEADEQARVLENGRLLRDNVFGTIEEDALRR 182
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFT+NALY ++DYVGG+ DLR ++ IG A R ED +R+LR RF G
Sbjct: 183 DFTVNALYYHIADFTLVDYVGGMADLRCGVLRLIGAAEVRYREDPVRMLRAVRFAVKLGF 242
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ + L + R++ E KL L A + + G+F +F +
Sbjct: 243 RMHPETAEAIP-RMAHLLGHIPPARLFDETLKLFVTGMGLEAFECLRHYGLFGYLFPATE 301
Query: 240 EI 241
+
Sbjct: 302 AV 303
>gi|262367096|gb|ACY63653.1| poly(A) polymerase [Yersinia pestis D182038]
Length = 351
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 68 SDNALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL--- 124
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ ++ + ++ T R G + + D
Sbjct: 125 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDD 183
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 184 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAA 243
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+I + + L+ + R++ E KLL++ + + +F+ +F
Sbjct: 244 KLDM-SISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 302
Query: 236 LDV 238
+
Sbjct: 303 PLI 305
>gi|198283567|ref|YP_002219888.1| polynucleotide adenylyltransferase region [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665962|ref|YP_002426192.1| polyA polymerase family protein [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198248088|gb|ACH83681.1| Polynucleotide adenylyltransferase region [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518175|gb|ACK78761.1| polyA polymerase family protein [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 450
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 75/417 (17%), Positives = 145/417 (34%), Gaps = 22/417 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73
L +I + +VGG VRD L N D D+A V + + T
Sbjct: 40 LYDIGRTAASLGTPAYLVGGCVRDLLQNHPAPDTDLAIEGDVRAVAEACTAQLSGMQCTY 99
Query: 74 SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+GT + D+ R + V D AD RRDFTINA+
Sbjct: 100 HPQFGTAILEYPDGFRLDLARCRVEHYPAPAALPEVRPGDIVADLARRDFTINAMAISLD 159
Query: 133 GK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGL 187
+D GG DL++ ++ + ++D R+LR RF + + L
Sbjct: 160 PGSFGGFLDPHGGRMDLQHGLLRVLHP--LSFVDDPTRMLRGLRFAVRFHLRLEPGTHVL 217
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ + A+ LS R+W E+ +LE ++ + ++ + E
Sbjct: 218 LKTALARDIFARLSGARLWRELKYVLELEDLAGVFEKLDAWQLWPLLRPVPPEP-----E 272
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYFLISFFNCNFN 304
++ + + +I R D +L++ + + + +
Sbjct: 273 TLLASMKRGRQEITWFHRHFPGERLFDTAVLLTLIWRHIPWAEAEKRLHCWPVADGHHIL 332
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS----DIIHWKK 360
+ + E+ A+L L+L + V ++ +
Sbjct: 333 RDLQFLSEVSAALAQATRPSAAAQLWASLSLPGILALLAEHPESDAVAESGRHYLLKQRA 392
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK-LIASSQ 416
PL+G D+ G+ PG ++G +L + ++ + + L+R+ ++ S Q
Sbjct: 393 LKSPLSGRDLQAMGLAPGPQLGKVLRRLYEAHLDGEIEDKETARQWLIRQGILPSIQ 449
>gi|332160459|ref|YP_004297036.1| poly(A) polymerase I [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325664689|gb|ADZ41333.1| poly(A) polymerase I [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
Length = 472
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 69/368 (18%), Positives = 133/368 (36%), Gaps = 29/368 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 49 SDNALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL--- 105
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ ++ + ++ T R G + + D
Sbjct: 106 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQQTEDSDKNSSQQAQNGMLLRDNIFGTIEDD 164
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IG R ED +R+LR RF A
Sbjct: 165 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGSPETRYREDPVRMLRAVRFAA 224
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
I + + L + R++ E KLL++ + + +F+ +F
Sbjct: 225 KLDM-TISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 283
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + +++++ + D + L + ++ A+K +
Sbjct: 284 PLIARNFTEHHDSAMERILVQVLKNTDHRLHNDKRVNPAFLFAAMLWYPLIEHAQKLTQE 343
Query: 289 REIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + I K + + +L++ +
Sbjct: 344 SGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPK 403
Query: 348 ILQVLSDI 355
+
Sbjct: 404 FRAAYDLL 411
>gi|307265132|ref|ZP_07546691.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306919754|gb|EFN49969.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 388
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 74/394 (18%), Positives = 134/394 (34%), Gaps = 31/394 (7%)
Query: 14 DLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
DLI +L ++ K + KS IVGG VRD L+ + DID+ I I
Sbjct: 9 DLIKLLKEISLKTKIKSYIVGGVVRDFLLGVKNLDIDVVVEGDGIEFAYILLSYLKGDIV 68
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
++ T + DI + R + + + D RRDFTIN L D
Sbjct: 69 VYEAFRTATLSYDGISIDIISARKEYYERPAALPTIEFSNIYDDMARRDFTINTLAYDVI 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ I + + + + ++D RI R R+ Y I+ +
Sbjct: 129 EEKILDYFNGLEDLKKGLIRVLHPK-SFIDDPTRIFRAIRYATRYSF-EIEEKTHNLMKE 186
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + +++LS++RI +EI +L+ I + GI K IF + +
Sbjct: 187 SIENIRLLSADRIRNEIFLILKESKAQEMIDKLIYYGIDKVIFDGIT----LNTQHLDTV 242
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E ++ L + +D I + +
Sbjct: 243 YVNLEIELYRFLVLFYYLKEKDINEIEKRL----------------------RINKIYLK 280
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL--SDIIHWKKPLFPLTGDDV 370
K +++ I T ++ ++V+ K + G D+
Sbjct: 281 ALKDLVFLREQLNCQNKNIRKIRETIEETKEEVLKAIEVMEGEKAEKIIKGKLTVKGKDI 340
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
G+PPG G ++ + + IN E++
Sbjct: 341 ENLGLPPGSLYGELMDNVFEAKINGIIATRDEEI 374
>gi|167035687|ref|YP_001670918.1| poly(A) polymerase [Pseudomonas putida GB-1]
gi|166862175|gb|ABZ00583.1| poly(A) polymerase [Pseudomonas putida GB-1]
Length = 462
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 19/240 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R
Sbjct: 38 FSRHAVNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARI-- 95
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADS 117
+ + + ++ ++ T R+ D GR + + D+
Sbjct: 96 --IGRRFKLVHVHFGREIIEVATFRAHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDA 153
Query: 118 LRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINALY D + I DY G++D+RNR ++ IGD HR ED +R+LR RF A
Sbjct: 154 QRRDFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAK 213
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + R++ E KL + A + + +F+ +F
Sbjct: 214 LDF-GIEKHTFQPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFP 272
>gi|294794520|ref|ZP_06759656.1| polyA polymerase [Veillonella sp. 3_1_44]
gi|294454850|gb|EFG23223.1| polyA polymerase [Veillonella sp. 3_1_44]
Length = 472
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 87/461 (18%), Positives = 163/461 (35%), Gaps = 74/461 (16%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + +
Sbjct: 3 EQANRILTVLEEAGHEAYIIGGAVRDILMHQKPHDFDIVTSARPDTVIEVLRSHDIQTTD 62
Query: 73 -TSISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINALYA 129
S+G + + ++I T R++ + +++ + D LRRDFT+N +
Sbjct: 63 LVGKSFGVVVATLEGRQYEIATYRTERYGADSHRPEEIIYADTLEEDVLRRDFTVNGMAM 122
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
++ G+VID VGG D++++T++ IG+A R ED LR+ R RF A +
Sbjct: 123 NRFGEVIDLVGGRRDIKHKTLRTIGNAQERFEEDALRLFRACRFVAKLDFLPTEDLLEAM 182
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE------ISL 243
KA + LS ER+ SE+++L+ + + + + V+ L
Sbjct: 183 P-KAFHRVPGLSLERVRSELDRLMLEPAVAKGLDVLVQSRLAECSCRVVENGVAHEVPIL 241
Query: 244 DQLSQVIEAEQ----------------VFEWKIDSLLRFIVLISW--------------- 272
+L ++ Q V + D LR+ L+
Sbjct: 242 PELYHLVNLPQEKDFHEFDGWYHTLAVVSHTEPDLTLRWGALLHDVAKGMPTVRAVVNGR 301
Query: 273 --------QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL------SIPEIKKLFY 318
+ ++ + P+ + + + + +
Sbjct: 302 LTDRGHDTLGAEMTETLLTRLGYPKSFVRRVAWIVKNHMRFHYFVQNGEANEKKWIRKEA 361
Query: 319 LYGDKVMIAKLKIFL---------ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
G+ ++I + + T L + P+ D
Sbjct: 362 RSGEFRDSQIMRIAWEQLSKVCAADVLGCGKPYASTDGTLAFGECMADLSL-EMPIHTKD 420
Query: 370 V------VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
+ +K GKKVG L + + N + L
Sbjct: 421 LNYDERVIKL---AGKKVGEGLQYLLGQVQNGVIPNEPDAL 458
>gi|332142885|ref|YP_004428623.1| poly(A) polymerase I [Alteromonas macleodii str. 'Deep ecotype']
gi|332143070|ref|YP_004428808.1| poly(A) polymerase I [Alteromonas macleodii str. 'Deep ecotype']
gi|327552907|gb|AEA99625.1| poly(A) polymerase I [Alteromonas macleodii str. 'Deep ecotype']
gi|327553092|gb|AEA99810.1| poly(A) polymerase I [Alteromonas macleodii str. 'Deep ecotype']
Length = 439
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 60/300 (20%), Positives = 115/300 (38%), Gaps = 24/300 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ + ++ LN +S +VGG VRD LM +D D+AT P+++ +F R
Sbjct: 14 SANALKVMYRLNGAGFESYLVGGCVRDILMGHEPKDFDVATNATPEQIKGLFKNCRL--- 70
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------------------DGRYAKVVFTRDW 113
+ I+ ++ ++ T R G+ +
Sbjct: 71 -IGRRFRLAHIVFGREIIEVATFRGHHQESDEDENVPKAKVVAKRDSHGQLVRDNVFGSI 129
Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
+ D+ RRDFT NA+Y V D+ GL + R ++ IGD R ED +R+LR R
Sbjct: 130 EEDAERRDFTFNAMYYSVADFTVTDFANGLAAIEKREVELIGDPETRYREDPVRMLRAVR 189
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
F G I+ L+ + R++ E KL + + ++ G+ +
Sbjct: 190 FAVKLGM-RIEEKTAEPIKPLANLLQNIPPARLFEETLKLFLSGKGEVTFLMLHEYGLIE 248
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
+F + D+ S+ ++ + D + ++ + L + ++
Sbjct: 249 PLFPQLAPFLKDENSREMQFVRRVLANTDERINSNQRVTPAFLYAALLWYPVEEQSQHLQ 308
>gi|209524128|ref|ZP_03272679.1| Polynucleotide adenylyltransferase region [Arthrospira maxima
CS-328]
gi|209495503|gb|EDZ95807.1| Polynucleotide adenylyltransferase region [Arthrospira maxima
CS-328]
Length = 925
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 83/447 (18%), Positives = 147/447 (32%), Gaps = 63/447 (14%)
Query: 12 DSDLINILSLL----NKGEDKSCIVGGAVRDSLM-----NLSVQDIDIATTI-------- 54
+L IL+ + + + +VGG VRD L+ NL + DID+
Sbjct: 467 APELWQILAKIAELSQQRGWQIYLVGGGVRDLLLAESTDNLLLHDIDLVVDGCYHNSTNN 526
Query: 55 ----------LPDRVMRIFSKTRYKV-IPTSISYGTIKIICRKK------YFDITTLRSD 97
+ R + + + + T ++ + DI T R++
Sbjct: 527 ISDEATMTISPAVELARSLQEYYPQARLEVHGQFQTAALLWHNHPVLNSLWIDIATARTE 586
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----KVIDYVGGLNDLRNRTIKFI 153
V + D RRDFTINAL +++D+ GG+ DL R I+ +
Sbjct: 587 FYPYPAANPEVEASSIRQDLYRRDFTINALALRLNEPNSGELLDFFGGVKDLELREIRVL 646
Query: 154 GDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS------ 207
+ED RI R RF G G+ ++ S
Sbjct: 647 HPH--SFIEDPTRIYRAVRFAVRLGFSLEHHTKEYVDYAINSGIYDRQRQQRNSAKIPAL 704
Query: 208 ------EINKLLEAKNPLNAIVHMYNGGIFKEIFL--DVQEISLDQLSQVIEAEQVFEWK 259
E+ +L+A A+ + + I ++ ++ Q+ V + F+
Sbjct: 705 EARLKSELKYILQAPYWQPALHLLGELKALRCIHPTLELNQLLWRQIRTVDRCLKRFDPN 764
Query: 260 I---DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+R VLI+ + +A F + L++ N L +
Sbjct: 765 HTLAHWQIRLDVLIAALSPEYRREVADIFQFNSQQVDRLLNLENAQTRVADLLPNCQQPS 824
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376
Y + + I +A H + Q+ + HW L G+D+ K G
Sbjct: 825 DYFRVFEPYDLPMLILIASHSPRWVRK------QIWRYLNHWWNAKPILNGNDLKKLGYK 878
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQED 403
PG K +L ++ + E
Sbjct: 879 PGPKFQVMLNDLLNATLDGIISDTVEA 905
>gi|330811775|ref|YP_004356237.1| polynucleotide adenylyltransferase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|28932734|gb|AAO60158.1| polynucleotide adenylyltransferase [Pseudomonas fluorescens]
gi|327379883|gb|AEA71233.1| Putative polynucleotide adenylyltransferase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 465
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD L+N++ +D D+AT+ P+++ F R
Sbjct: 42 AVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQIRAEFRNARI----IG 97
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ + GR + + D+ RR
Sbjct: 98 RRFKLVHIHFGREIIEVATFRANHPQNDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 157
Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D + I DY G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 158 DFTINALYYDPVSERILDYANGVHDIRNRLIRLIGDPKQRYQEDPVRMLRAVRFAAKLDF 217
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ V + L+ + S R++ E+ KL + N + + + +F +F
Sbjct: 218 -GIEKHSAVPIRELAPMLREIPSARLFEEVLKLFLSGNAADTFEMLVDLQLFDPLFP 273
>gi|78224373|ref|YP_386120.1| Poly(A) polymerase, PcnB [Geobacter metallireducens GS-15]
gi|78195628|gb|ABB33395.1| Poly(A) polymerase, PcnB [Geobacter metallireducens GS-15]
Length = 457
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 63/286 (22%), Positives = 110/286 (38%), Gaps = 39/286 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + +VGG VRD L+ +D D+AT P++V R+F R
Sbjct: 25 SPNALRVLYRLKDNGCIAYLVGGCVRDLLLGREPKDFDVATNATPNQVKRLFRNCRL--- 81
Query: 72 PTSISYGTIKIICRKKYFDITTLR-----------------------SDLITDGRYAKVV 108
+ I + + ++ T R + R+
Sbjct: 82 -VGRRFRLAHIHYQDEIIEVATFRALAPEEPEDTAPAPVSPENVPGEGERPRLPRHVVSD 140
Query: 109 FTR--------DWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHR 159
+ D++RRDFT+NAL + +IDY G+ DLR I+ IGD R
Sbjct: 141 EGMVLRDNVFGTPEEDAVRRDFTVNALAYNIADFSIIDYANGMEDLRRGVIRTIGDPLVR 200
Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219
ED +R+LR RF A G ++ A + + ++ R++ E+ KL +
Sbjct: 201 FTEDPVRMLRAVRFAATLGF-TVEDATWQAIRELAPAITRATAPRLYEEVLKLFLSGEGE 259
Query: 220 NAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE--QVFEWKIDSL 263
+ G+F +F ++ ++ + EW D +
Sbjct: 260 RVYQLLRQAGLFSHLFPRFSAWLDREIDGFPHSQVGKALEWADDQV 305
>gi|291279467|ref|YP_003496302.1| polyA polymerase family protein [Deferribacter desulfuricans SSM1]
gi|290754169|dbj|BAI80546.1| polyA polymerase family protein [Deferribacter desulfuricans SSM1]
Length = 879
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 79/414 (19%), Positives = 145/414 (35%), Gaps = 18/414 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L+ I L ++ + +VGG VRD +M + DIDI + + F+K + +
Sbjct: 465 LVEIGVLADQVGMNAYVVGGFVRDLIMKIENFDIDIVVEGDAVVLAKKFAKLKNAKVSVH 524
Query: 75 ISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ T +I D T RS+ A V K D RRDFTIN +
Sbjct: 525 YKFKTAVVILPDNFRIDFATARSEYYDFPAAAPKVEDSSIKIDLYRRDFTINTIAIKLNK 584
Query: 134 KVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ + ++ + ++D RI R RF Y +
Sbjct: 585 EDFGALVDYFGAQSDIRDRKIRVLHNLSFVDDPSRIFRAIRFAVRYNFDIGPHTERLLKH 644
Query: 192 KAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--EISLDQLSQ 248
K + + +R++ EI +L K L A+ M N GI K + E SL+
Sbjct: 645 AINLKLIDRIVGQRLFLEIKYILCEKEYLKALNMMKNYGILKFFSNSINFSEESLEIFKF 704
Query: 249 VIEAEQVFEWKID-----SLLRFIVLISWQDKKSILSMAKKF-SLPREIRYFLISFFNCN 302
+ + + +I+ + RF +L + + + ++F +YF F
Sbjct: 705 LDKLINWYSVQINRNIEIWIPRFNLLFHSLKRGEFIKLLERFEFNSNYKKYFASQVFKSR 764
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
L + Y+Y + F+ L + I + + I
Sbjct: 765 NAAIRLKKNKNITNSYIY--NTLKDLEDEFVLYLSAILGEKFENLIKKYYTYIKEI---K 819
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ G+D+ G P +K +L + ++ +++ +KL +
Sbjct: 820 LEINGNDLKDLGYKPSEKFKYVLDKLLELKLDGVILNKGDEI-KYAKKLFEEIE 872
>gi|292489258|ref|YP_003532145.1| methionine gamma-lyase [Erwinia amylovora CFBP1430]
gi|291554692|emb|CBA22417.1| methionine gamma-lyase [Erwinia amylovora CFBP1430]
gi|312173418|emb|CBX81672.1| methionine gamma-lyase [Erwinia amylovora ATCC BAA-2158]
Length = 481
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 58/298 (19%), Positives = 107/298 (35%), Gaps = 20/298 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R
Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQMRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL---------------ITDGRYAKVVFTRDWKAD 116
+ ++ + ++ T R +G + + D
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQVVEDRNSSHRDQNGMLLRDNIFGSIEDD 167
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRD TIN+LY V DYVGGL+DL+ I+ IGD R ED +R+LR RF A
Sbjct: 168 AQRRDLTINSLYYSVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFAA 227
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G A I + + L + +
Sbjct: 228 KLDMSIAAGTGEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLEYQLFQPLFP 287
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
+ + + S + + D+ + + ++ + + + + ++
Sbjct: 288 IITRYFTEQGDSNMERMILLVLKNTDTRIHNQMRVNPAFLFAAMFWYPQLEMAQKFAQ 345
>gi|294792766|ref|ZP_06757913.1| CCA-adding enzyme [Veillonella sp. 6_1_27]
gi|294456665|gb|EFG25028.1| CCA-adding enzyme [Veillonella sp. 6_1_27]
Length = 494
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 89/460 (19%), Positives = 157/460 (34%), Gaps = 72/460 (15%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + +
Sbjct: 25 EQANRILTVLEEAGHEAYIIGGAVRDMLMHQKPHDFDIVTSARPDTVIEVLRGHDIQTTD 84
Query: 73 -TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYA 129
S+G + K ++I T R++ + T + D LRRDFT+N +
Sbjct: 85 LVGKSFGVVVATLEGKQYEIATYRTERYGADSHRPEEITYADTLEEDVLRRDFTVNGMAM 144
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
++ G+VID VGG D++++ ++ IG+A R ED LR+ R RF A D L A
Sbjct: 145 NRYGEVIDLVGGRRDIKHKMLRTIGNAQERFEEDALRLFRACRFVAKLDFLP-SKDLLEA 203
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE------ISL 243
KA + LS ER+ +EIN+L+ + + + + V+ L
Sbjct: 204 MPKAFHRVPGLSLERVRNEINRLMLEPAVAKGLDVLVQSRLAECSCRVVENGTAREVPIL 263
Query: 244 DQLSQVIEAEQ----------------VFEWKIDSLLRFIVLISW--------------- 272
+L ++ Q V + D +LR+ L+
Sbjct: 264 PELYHLVNLPQEKDFHEFDGWYHTLAVVSHTEPDLVLRWGALLHDVAKGMPAVRAIINGR 323
Query: 273 --------QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324
+ ++ + P+ + + +
Sbjct: 324 LTDRGHDTLGAEMAETLLTRLGYPKTFVKRVAWIVKNHMRFHYFVQNGDANEKKWLRKEA 383
Query: 325 --------------MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
K+ A + + + P+ D+
Sbjct: 384 RSGEFRDSQIMRTAWEQLAKVCAADVLGCGKPYSSTDGTLAFGECMADLSLEMPVHTKDL 443
Query: 371 ------VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
+K GK+VG L + + N + L
Sbjct: 444 NYDERVIKL---AGKQVGEGLQYLLGQVQNGVIPNKPDAL 480
>gi|313500605|gb|ADR61971.1| PcnB [Pseudomonas putida BIRD-1]
Length = 460
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 63/240 (26%), Positives = 108/240 (45%), Gaps = 19/240 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R
Sbjct: 38 FSRHAVNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARI-- 95
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADS 117
+ + + ++ ++ T R+ D GR + + D+
Sbjct: 96 --IGRRFKLVHVHFGREIIEVATFRAHHSEDDQGDTHRSSHNASGRILRDNVYGTLEEDA 153
Query: 118 LRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINALY D + I DY G++D+RNR ++ IGD R ED +R+LR RF A
Sbjct: 154 QRRDFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTQRYQEDPVRMLRAVRFAAK 213
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + L+ + R++ E KL + A + + +F+ +F
Sbjct: 214 LDF-GIEKHTYLPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFP 272
>gi|253999870|ref|YP_003051933.1| poly(A) polymerase [Methylovorus sp. SIP3-4]
gi|253986549|gb|ACT51406.1| poly(A) polymerase [Methylovorus sp. SIP3-4]
Length = 455
Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats.
Identities = 70/380 (18%), Positives = 142/380 (37%), Gaps = 26/380 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I L K ++ IVGGAVRD L+ +D D+AT P++V R+F ++R
Sbjct: 44 LLSTGAIKTTEGLQKAGFEAFIVGGAVRDLLLKKRPKDFDVATNATPEQVNRVFRRSRI- 102
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD---------GRYAKVVFTRDWKADSLRR 120
+ + ++ + +++T R + D GR + + D+LRR
Sbjct: 103 ---IGRRFRLVHVLFGDETVEVSTFRGSHLNDDGDAKIADSGRILRDNVFGSQEDDALRR 159
Query: 121 DFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFT NALY D + V+D+ G D++ ++ IGD R ED +R+LR R A G
Sbjct: 160 DFTANALYYDPSSEDVLDFHHGYEDIQAGILRMIGDPVTRYREDPVRMLRAIRLSAKLG- 218
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD-- 237
+D K L+ + + R++ E+ KL + + + ++ + G+ +
Sbjct: 219 LKLDKATEAPIPKLADELQEVPASRLFDEMLKLFLSGHAMESVKALRQHGLHHGLLPLLD 278
Query: 238 --VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+++ ++ + D + L + +L+ +++ E
Sbjct: 279 VVLEQPMGERFVTLALKNTDERVLQDKPVSPSFLFATLLWHEVLTAWQQYQDNGERPIPA 338
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD- 354
+ I K + ++ + + +
Sbjct: 339 LHLAMHEVCDIQAEKLAIHKRYSTTMKEIWGMQPRFEQRSGKRPYALLEHPRYRAAYDFL 398
Query: 355 IIHWKKPLFPLTGDDVVKYG 374
++ + P ++ G
Sbjct: 399 LLRCESGELP------MELG 412
>gi|332535564|ref|ZP_08411337.1| poly(A) polymerase [Pseudoalteromonas haloplanktis ANT/505]
gi|332035021|gb|EGI71540.1| poly(A) polymerase [Pseudoalteromonas haloplanktis ANT/505]
Length = 493
Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats.
Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 18/244 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ I +L L G + +VGG +RD L+ +D D+ T PD+V ++F R
Sbjct: 77 FSPNAIKVLYRLKDGGYDAYLVGGCIRDILLGQQPKDFDVVTNATPDQVKKLFRNCRL-- 134
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSL 118
+ I+ ++ ++ T+R G+ + + D+
Sbjct: 135 --IGRRFRLAHIVFGREIIEVATMRGHHEAQEDKNQISQSSNEGQLLRDNVFGSIEEDAE 192
Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDF+INALY + DY GL ++ + I+ IGD R ED +R+LR RF
Sbjct: 193 RRDFSINALYYSIKDFSIHDYANGLAAIKAKQIELIGDPETRYREDPVRMLRAVRFATKL 252
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+I + L + R++ EI KL + + G+F+ +F +
Sbjct: 253 DM-SIAPKSEKPISELASLLDNIPPARLFEEILKLFLNGKAEANFLMLRKYGLFRSLFPE 311
Query: 238 VQEI 241
+ +I
Sbjct: 312 LDKI 315
>gi|123441078|ref|YP_001005067.1| poly(A) polymerase I [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|122088039|emb|CAL10827.1| poly(A) polymerase [Yersinia enterocolitica subsp. enterocolitica
8081]
Length = 440
Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats.
Identities = 70/368 (19%), Positives = 134/368 (36%), Gaps = 29/368 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 17 SDNALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ ++ + ++ T R G + + D
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQQTEDSDKNSSQQAQNGMLLRDNIFGTIEDD 132
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 133 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAA 192
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
I + + L + R++ E KLL++ + + +F+ +F
Sbjct: 193 KLDM-TISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 251
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + +++++ + D + L + ++ A+K +
Sbjct: 252 PLIARNFTEHHDSAMERILVQVLKNTDHRLHNDKRVNPAFLFAAMLWYPLIEHAQKLTQE 311
Query: 289 REIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + I K + + +L++ +
Sbjct: 312 SGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPK 371
Query: 348 ILQVLSDI 355
+
Sbjct: 372 FRAAYDLL 379
>gi|187477229|ref|YP_785253.1| poly(A) polymerase [Bordetella avium 197N]
gi|115421815|emb|CAJ48328.1| poly(A) polymerase [Bordetella avium 197N]
Length = 452
Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 12/221 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I + +L + ++ IVGGAVRD ++ L +D D+AT P+++ +F + R
Sbjct: 37 SRHAIKVCEVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + ++ ++ + +T R + GR + + D+ RRDFT+N
Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASAEQETDEHGRILRDNVFGSHEEDAARRDFTMN 152
Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY D +VIDY G+ DL+ R I+ IGD R ED +R+LR RF A ID
Sbjct: 153 ALYYDPHTEEVIDYHNGVQDLKKRQIRMIGDPVTRYREDPVRMLRAVRFAAKLN-GTIDP 211
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
+ ++ + + R++ E+ KLL + ++ + +
Sbjct: 212 ATRQPIATMAELIENVPASRLFDEMLKLLTCGHAMDCLRQL 252
>gi|71276370|ref|ZP_00652647.1| Poly(A) polymerase [Xylella fastidiosa Dixon]
gi|71898647|ref|ZP_00680817.1| Poly(A) polymerase [Xylella fastidiosa Ann-1]
gi|71901428|ref|ZP_00683518.1| Poly(A) polymerase [Xylella fastidiosa Ann-1]
gi|170729425|ref|YP_001774858.1| polynucleotide adenyltransferase [Xylella fastidiosa M12]
gi|71162832|gb|EAO12557.1| Poly(A) polymerase [Xylella fastidiosa Dixon]
gi|71728799|gb|EAO30940.1| Poly(A) polymerase [Xylella fastidiosa Ann-1]
gi|71731594|gb|EAO33655.1| Poly(A) polymerase [Xylella fastidiosa Ann-1]
gi|167964218|gb|ACA11228.1| polynucleotide adenyltransferase [Xylella fastidiosa M12]
Length = 421
Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 67/363 (18%), Positives = 140/363 (38%), Gaps = 16/363 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + + +VGGAVRD L+ +D D+AT P+++ ++F R
Sbjct: 18 SPNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRL--- 74
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT--------DGRYAKVVFTRDWKADSLRRDFT 123
+ ++ ++ ++ T R++ +GR + D+ RRDFT
Sbjct: 75 -IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFT 133
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DYVGG D+++R ++ IGD R ED +R+LR R A G I
Sbjct: 134 CNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAAKLGF-EI 192
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
++ + L ++ R++ E+ KL + + + + + + G+ +F + +
Sbjct: 193 EAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVVSFEALEDFGLIDVLFPESAKA- 251
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ ++ +V + S + ++ + ++ + +
Sbjct: 252 -LRANRSGALRRVLIEGLHSTDKRVIKDEPVSPAFLFALLLWPGFCHALVTLQLQGVQPE 310
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
Q+ + + + L N + +L++L
Sbjct: 311 EAQRRAADRVTLHHLERVALPRRFSLPMQEIWLLQNRFISRQPKRVLRLLEHPRFRAAFD 370
Query: 363 FPL 365
F +
Sbjct: 371 FLV 373
>gi|26991381|ref|NP_746806.1| poly(A) polymerase [Pseudomonas putida KT2440]
gi|24986448|gb|AAN70270.1|AE016667_3 poly(A) polymerase [Pseudomonas putida KT2440]
Length = 460
Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 19/240 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R
Sbjct: 38 FSRHAVNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARI-- 95
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADS 117
+ + + ++ ++ T R+ D GR + + D+
Sbjct: 96 --IGRRFKLVHVHFGREIIEVATFRAHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDA 153
Query: 118 LRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINALY D + I DY G++D+RNR ++ IGD HR ED +R+LR RF A
Sbjct: 154 QRRDFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAK 213
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + L+ + R++ E KL + A + + +F+ +F
Sbjct: 214 LDF-GIEKHTYLPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFP 272
>gi|148549764|ref|YP_001269866.1| poly(A) polymerase [Pseudomonas putida F1]
gi|148513822|gb|ABQ80682.1| poly(A) polymerase [Pseudomonas putida F1]
Length = 460
Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 19/240 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R
Sbjct: 38 FSRHAVNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARI-- 95
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADS 117
+ + + ++ ++ T R+ D GR + + D+
Sbjct: 96 --IGRRFKLVHVHFGREIIEVATFRAHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDA 153
Query: 118 LRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINALY D + I DY G++D+RNR ++ IGD HR ED +R+LR RF A
Sbjct: 154 QRRDFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAK 213
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + L+ + R++ E KL + A + + +F+ +F
Sbjct: 214 LDF-GIEKHTYLPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFP 272
>gi|94500957|ref|ZP_01307482.1| tRNA nucleotidyltransferase/poly(A) polymerase [Oceanobacter sp.
RED65]
gi|94426897|gb|EAT11880.1| tRNA nucleotidyltransferase/poly(A) polymerase [Oceanobacter sp.
RED65]
Length = 445
Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 79/414 (19%), Positives = 144/414 (34%), Gaps = 44/414 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L K ++ +VGG VRD L+ L +D D+ T P+ V ++F +R
Sbjct: 36 SENALKVLYRLKKSGYEAHLVGGGVRDLLLGLHPKDFDVVTDASPEEVHKLFKNSRI--- 92
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK-----------ADSLRR 120
+ + + + ++ T R D + D++RR
Sbjct: 93 -IGRRFRLVHVTFGRDMIEVATFRGDHGNAEGKHQSKTNEAGMLLRDNVYGSIDEDAMRR 151
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY + V Y GG++D+ + ++ IGD R ED +R+LR RF A G
Sbjct: 152 DFTINALYYNIADFSVKSYAGGIDDIHAKRLRLIGDPETRYREDPVRMLRAARFAAKLGF 211
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV- 238
+ID + L+ + R++ E+ KL A + G+F+ +F
Sbjct: 212 -SIDKSSKAPIKELAPLLRDIPPARLFEEVLKLFMAGYAKATFEQLQALGLFEPLFPHTQ 270
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSL----LRFIVLISWQDKKSILSMAKKFSLPREIRYF 294
Q I ++ +++ + L L S +L AK +
Sbjct: 271 QCIDDNKFYRLMVMHALNNSDARVAQGKSLTPAFLFSVFLWPCVLETAKLLQQQGATKGQ 330
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ + I K F + ++ + ++ T
Sbjct: 331 AMQQAMTQVISNQQARTAIPKRFAIPIREIWDLQHRLVARKPKQLETIASHNRFRAAYDF 390
Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ ++ G L + W + FQ +L
Sbjct: 391 LLLREQS--------------------GEKLNQAGEFW--TQFQNDHPELIRKA 422
>gi|322834354|ref|YP_004214381.1| poly(A) polymerase [Rahnella sp. Y9602]
gi|321169555|gb|ADW75254.1| poly(A) polymerase [Rahnella sp. Y9602]
Length = 568
Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 65/242 (26%), Positives = 102/242 (42%), Gaps = 20/242 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L++ +D DI T PD+V ++F R
Sbjct: 144 SENALKVLYRLNKSGFEAFLVGGGVRDLLLDKKPKDFDITTNATPDQVRKLFRNCRL--- 200
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADS 117
+ ++ + ++ T R G + + D+
Sbjct: 201 -VGRRFRLAHVMFGPEIIEVATFRGHHEQHEETEDKNVSQQAVNGMLLRDNIFGTIEDDA 259
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTIN+LY V DY GGL DL N I+ IGD R ED +R+LR RF A
Sbjct: 260 QRRDFTINSLYYGVADFTVRDYTGGLRDLENGIIRLIGDPETRYREDPVRMLRAVRFAAK 319
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I + + L+ + R++ E KLL+A + +F+ +F
Sbjct: 320 LDM-KISPETAEPIPRLATLLQEIPPARLFEESLKLLQAGYGYETYKKLCEYQLFQPLFP 378
Query: 237 DV 238
+
Sbjct: 379 LI 380
>gi|78047370|ref|YP_363545.1| polynucleotide adenylyltransferase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325924974|ref|ZP_08186400.1| poly(A) polymerase [Xanthomonas perforans 91-118]
gi|78035800|emb|CAJ23491.1| Polynucleotide adenylyltransferase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544637|gb|EGD15994.1| poly(A) polymerase [Xanthomonas perforans 91-118]
Length = 455
Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 14/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + + +VGGAVRD L+ +D D+AT P+ V +F R
Sbjct: 39 SPNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATDATPEEVKALFRNCRL--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------TDGRYAKVVFTRDWKADSLRRDFT 123
+ ++ ++ ++ T R+++ +GR + + D++RRDFT
Sbjct: 96 -IGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGTIEDDAIRRDFT 154
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DY GG D++ R +K IGD R ED +R+LR R A +I
Sbjct: 155 CNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLAAKLNF-DI 213
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
++ + L + R++ EI KL + + + + + G+ +F +
Sbjct: 214 EAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGVLFPE 268
>gi|291086145|ref|ZP_06354946.2| polyA polymerase [Citrobacter youngae ATCC 29220]
gi|291069510|gb|EFE07619.1| polyA polymerase [Citrobacter youngae ATCC 29220]
Length = 454
Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 18/240 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSEADRTTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLEEGIIRLIGNPETRYREDPVRMLRAVRFAAKLD 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEEALKLLQAGYGYETYKKLREYSLFQPLFPTI 268
>gi|282890004|ref|ZP_06298538.1| hypothetical protein pah_c009o016 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500096|gb|EFB42381.1| hypothetical protein pah_c009o016 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 423
Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 5/230 (2%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
DSD + +L L + +VGG+VRD L+ + +D DI+T+ P+ + ++F K+
Sbjct: 17 MIDSDALYVLQRLRDAGYTAYLVGGSVRDLLIKQTPKDYDISTSAKPEEIKQLFQKS--- 73
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + I + K +++T RS + + D LRRDFTIN L+
Sbjct: 74 CLLIGRRFRLAHIRFKHKIIEVSTFRSGDNEGDLILQDNQWGSPEEDVLRRDFTINGLFY 133
Query: 130 DQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D +ID+VGG D++++ ++ IGD R +D +R++R +F A +G ID+D
Sbjct: 134 DPANHSIIDFVGGWEDIKHKLLRTIGDPAIRFKQDPVRMIRLLKFRARFGF-EIDADSKK 192
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
A ++ +K + S R+ EI ++LE+ + + M GGI + +F +
Sbjct: 193 ALVQCRKEIMKSSPARVLEEIFRMLESGSAASFFHLMAKGGILELLFPLL 242
>gi|152998010|ref|YP_001342845.1| poly(A) polymerase [Marinomonas sp. MWYL1]
gi|150838934|gb|ABR72910.1| poly(A) polymerase [Marinomonas sp. MWYL1]
Length = 484
Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 65/253 (25%), Positives = 114/253 (45%), Gaps = 28/253 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK + +VGG VRD L+ + +D D+ T P+ V IFS +R
Sbjct: 41 SPNAVKVLYRLNKAGFDAFLVGGCVRDHLIGIKPKDFDVVTNATPEEVHTIFSNSRL--- 97
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD----------------------LITDGRYAKVVF 109
+ + + ++ +++T R++ G +
Sbjct: 98 -IGRRFKLVHVTFGREIIEVSTFRANSAQDDSDDDDTQNSSLKGKDSARSAHGIVLRDNV 156
Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168
+ + D+ RRDFT NALY + + + DY GGL D+ N+ I+ IGDA R ED +R+L
Sbjct: 157 YGNIEEDAERRDFTFNALYYNVKDFSIHDYCGGLKDIENKQIRIIGDARQRYQEDPVRML 216
Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228
R RF G ++++ + L + R++ E+ KLL + N + +
Sbjct: 217 RAIRFAGKLGF-ELEAETAAPIKEMAHLLDHIPPARLFEEVLKLLGSGNGIETFHLLRQY 275
Query: 229 GIFKEIFLDVQEI 241
G+F+ +F D +
Sbjct: 276 GLFRYLFPDTDAL 288
>gi|3650360|emb|CAA77045.1| polynucleotide adenylyltransferase [Pseudomonas putida]
Length = 463
Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 19/240 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R
Sbjct: 41 FSRHAVNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARI-- 98
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADS 117
+ + + ++ ++ T R+ D GR + + D+
Sbjct: 99 --IGRRFKLVHVHFGREIIEVATFRAHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDA 156
Query: 118 LRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINALY D + I DY G++D+RNR ++ IGD HR ED +R+LR RF A
Sbjct: 157 QRRDFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAK 216
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + L+ + R++ E KL + A + + +F+ +F
Sbjct: 217 LDF-GIEKHTYLPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFP 275
>gi|325127938|gb|EGC50840.1| poly(A) polymerase family protein [Neisseria meningitidis N1568]
Length = 374
Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 10/233 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
N++ L ++ +VGGA+RD L+ + +D D+AT P++V ++F ++R
Sbjct: 40 AAENVIRRLKGARFQAYVVGGAIRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----I 95
Query: 74 SISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + ++TT R GR K + D++RRDFT NALY
Sbjct: 96 GRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYY 155
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + I D+ G+ D+ R + IGDA R ED +RILR R G ++ +
Sbjct: 156 DPEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGF-DLSEETAA 214
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ LK R++ EI KLL + + + + I +I + +
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNAL 267
>gi|319778440|ref|YP_004129353.1| Poly(A) polymerase [Taylorella equigenitalis MCE9]
gi|317108464|gb|ADU91210.1| Poly(A) polymerase [Taylorella equigenitalis MCE9]
Length = 451
Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats.
Identities = 63/291 (21%), Positives = 114/291 (39%), Gaps = 14/291 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + +L +S IVGGAVRD ++ + +D D+AT P + +F +
Sbjct: 33 LVSRNAIKVCEVLRDHGYQSFIVGGAVRDLMLGKAPKDFDVATNATPLEIKPLFRRALI- 91
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + ++ + + +T R+ DGR + D RRDFTIN
Sbjct: 92 ---IGRRFKLVHVVFGPEIIETSTFRTSGSQPEDNDGRILFDNNYGTIETDVDRRDFTIN 148
Query: 126 ALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY D + D+ G+ D++N I+ IGD R ED +R+LR RF G
Sbjct: 149 ALYYDPISETVYDFHNGIKDIKNLQIRMIGDPEKRYREDPVRMLRAIRFAGKLG-AKFAP 207
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--- 241
+ + + RI+ E KLL + + I + + K +++I
Sbjct: 208 STYEPIKRLSHLISNVPDSRIFDETYKLLTCGDSIYCIQQLRQLQLDKGTLPLLEKILTL 267
Query: 242 -SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291
S ++ ++ +++ + L + + S +
Sbjct: 268 ESSEKFLRIAFERTDQRVRLNKSINPSYLYATILWPLVKSHFDNLIKENQQ 318
>gi|313891805|ref|ZP_07825410.1| putative tRNA adenylyltransferase [Dialister microaerophilus UPII
345-E]
gi|313119799|gb|EFR42986.1| putative tRNA adenylyltransferase [Dialister microaerophilus UPII
345-E]
Length = 490
Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats.
Identities = 68/259 (26%), Positives = 112/259 (43%), Gaps = 4/259 (1%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
DS+ + +L ++ K ++ +GG VRD L+N D DI T+ +PD+++ I K
Sbjct: 18 DSNAVFLLEIIEKSGYEAYFIGGCVRDLLLNKKPSDWDITTSAMPDKIVEILHNFNVKTF 77
Query: 72 PT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINALY 128
+ YGT+ I +K ++ITT R D+ + FT + K D RRDFTINA+
Sbjct: 78 DNAGMKYGTVSAIINEKIYEITTFRRDIYGQNSHLPDKVLFTENLKEDLSRRDFTINAMA 137
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+D+ G + DY GG +DLR + +K +GD+ ED LR+ R RF + +
Sbjct: 138 SDRNGNIYDYFGGQSDLRRKILKTVGDSEKSFCEDALRLFRACRFLGQLNFEPDNDLISA 197
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ + INKLL M + + + L ++
Sbjct: 198 MPYAFYRVSGLSLERVKRE-INKLLLTDYASKGFDLMVRTKLNETRCSVKENGKLKEIDI 256
Query: 249 VIEAEQVFEWKIDSLLRFI 267
+ E + +
Sbjct: 257 LPELSHLVDLPQMKEFHRF 275
>gi|256829174|ref|YP_003157902.1| poly(A) polymerase [Desulfomicrobium baculatum DSM 4028]
gi|256578350|gb|ACU89486.1| poly(A) polymerase [Desulfomicrobium baculatum DSM 4028]
Length = 424
Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats.
Identities = 69/377 (18%), Positives = 138/377 (36%), Gaps = 32/377 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + ++ L + + +VGG VRD L+ + +D D++T P ++ +IF
Sbjct: 19 HPDALKVMYRLVRKGFTAYLVGGGVRDLLLGRTPKDFDVSTNATPSQIKKIFQN----YF 74
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR-------DWKADSLRRDFTI 124
+ I + +T R + + D+LRRDFTI
Sbjct: 75 LIGRRFRLAHIRFDDHVIETSTFRRCPDQEEENGDEDLYMLRDNCYGTPEEDALRRDFTI 134
Query: 125 NALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
N L+ + + +ID+VGGL+D+ NR I+ IGD + R ED +R++R RF A I+
Sbjct: 135 NGLFYEVERFSIIDHVGGLSDIENRLIRCIGDPNIRFREDPVRMIRAVRFAARLDFH-IE 193
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE--- 240
A ++ + + S R++ E+ KL + A+ +Y G+ + ++ +
Sbjct: 194 PATYNAIMRHHEEILKASPPRVFEELQKLFAYGSGEKAVRLLYKTGLLHNLLPEIADFLD 253
Query: 241 -------ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
I L + + L+ + + + A +
Sbjct: 254 HDHGQDSILWTWLEHLDRRIRTVGKVEPVLVFAALFSAPVRHIAARYEADGERV--VYNA 311
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353
L + ++ ++ + ++ K + H+ L +
Sbjct: 312 MLEDLLQPICVRMSMPKWMCSRMIQIMANQTRFEPDKKKRFSKRGFVAHECFPETLALYQ 371
Query: 354 DIIHWKKPLFPLTGDDV 370
++G D+
Sbjct: 372 LG-------LLVSGADL 381
>gi|262273771|ref|ZP_06051584.1| poly(A) polymerase [Grimontia hollisae CIP 101886]
gi|262222186|gb|EEY73498.1| poly(A) polymerase [Grimontia hollisae CIP 101886]
Length = 451
Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats.
Identities = 78/381 (20%), Positives = 142/381 (37%), Gaps = 27/381 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+N +D DIAT P+ V ++F R
Sbjct: 31 SENALKVLYRLNKAGFEAYLVGGGVRDLLLNKQPKDFDIATNATPEEVRKLFRNCRL--- 87
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLRR 120
+ I+ + ++ T R DG + D+ RR
Sbjct: 88 -VGRRFRLAHILFGRDVIEVATFRGHHAGDKSDKAAARSNDGMLLRDNVYGTIDEDAERR 146
Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY + V DY GG+ DL+NRTI+ IGD R ED +R+LR RF A
Sbjct: 147 DFTINALYYNIDDFSVRDYAGGVEDLKNRTIRLIGDPETRYREDPVRMLRAVRFAAKLDM 206
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
I+ L+ + + R++ E KLL++ L + + +F +F +
Sbjct: 207 -RINEATAAPIPALAHLLRDIPAARLFEESLKLLQSGQGLATYRLLRDFNLFSPLFPLLD 265
Query: 240 EI-------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
E +++ +++ D + + + + + A++ + +
Sbjct: 266 EHFTEDHSSKCEKMLELVLKSTDARVAKDQRINPAFMFAAMLWYPLETRAEEIAFESGLS 325
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
Y+ N + ++ ++ L L +
Sbjct: 326 YYDAFMVAANDILDEQVKSIAIPRRFTA---MIRDIWQLQLRLSRRSGNRAYKLLEQNKF 382
Query: 353 SDIIHWKKPLFPLTGDDVVKY 373
+ + + G + +
Sbjct: 383 RAAFDFLEMRGEIEGGQLKEL 403
>gi|119899430|ref|YP_934643.1| poly(A) polymerase [Azoarcus sp. BH72]
gi|119671843|emb|CAL95757.1| probable poly(A) polymerase [Azoarcus sp. BH72]
Length = 452
Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats.
Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 13/222 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ S+L + K+ +VGGAVRD L+ +D D+AT+ P+ V +F + R
Sbjct: 37 SPAARKVCSVLQEHGYKAFVVGGAVRDLLIGHPPKDYDVATSATPEEVRALFRRARI--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ + ++ + +++T R ++ GR + D+ RRDFT+
Sbjct: 94 -IGRRFKIVHVMSGPETIEVSTFRALQDAESAETDEHGRVLRDNVYGSQAEDATRRDFTV 152
Query: 125 NALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
NALY D + I DY G+ D++ +T++ IGD R ED +R+LR R A G +ID
Sbjct: 153 NALYYDPGTETIVDYHHGVADVQQKTLRMIGDPRTRYREDPVRMLRAVRLGAKLG-LSID 211
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
+ L+ + + R++ E+ KLL + + + +
Sbjct: 212 PAARGPIREMASLLENVPAARLFDEMLKLLLSGYAVKCLRQL 253
>gi|313201844|ref|YP_004040502.1| poly(a) polymerase [Methylovorus sp. MP688]
gi|312441160|gb|ADQ85266.1| poly(A) polymerase [Methylovorus sp. MP688]
Length = 455
Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats.
Identities = 70/380 (18%), Positives = 141/380 (37%), Gaps = 26/380 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I L K ++ IVGGAVRD L+ +D D+AT P++V R+F ++R
Sbjct: 44 LLSTGAIKTTEGLQKAGFEAFIVGGAVRDLLLKKRPKDFDVATNATPEQVNRVFRRSRI- 102
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD---------GRYAKVVFTRDWKADSLRR 120
+ + ++ + +++T R + D GR + + D+LRR
Sbjct: 103 ---IGRRFRLVHVLFGDETVEVSTFRGSHLNDDGDAKIADSGRILRDNVFGSQEDDALRR 159
Query: 121 DFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFT NALY D + V+D+ G D++ ++ IGD R ED +R+LR R A G
Sbjct: 160 DFTANALYYDPSSEDVLDFHNGYEDIQAGILRMIGDPVTRYREDPVRMLRAIRLSAKLG- 218
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD-- 237
+D K L+ + + R++ E+ KL + + ++ + G+ +
Sbjct: 219 LKLDKATEAPIPKLADELQEVPASRLFDEMLKLFLSGYAMESVKALRQHGLHHGLLPLLD 278
Query: 238 --VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+++ ++ + D + L + +L+ +++ E
Sbjct: 279 VVLEQPMGERFVTLALKNTDERVLQDKPVSPSFLFATLLWHEVLTAWQQYQDNGERPIPA 338
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD- 354
+ I K + ++ + + +
Sbjct: 339 LHLAMHEVCDIQAEKLAIHKRYSTTMKEIWGMQPRFEQRSGKRPYALLEHPRYRAAYDFL 398
Query: 355 IIHWKKPLFPLTGDDVVKYG 374
++ + P ++ G
Sbjct: 399 LLRCESGELP------MELG 412
>gi|45600186|gb|AAS69672.1| polynucleotide adenyltransferase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 450
Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats.
Identities = 79/289 (27%), Positives = 123/289 (42%), Gaps = 17/289 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D D + I+ LNK K+ IVGG VRD L+ +D D+ T P+++ +IF+ R
Sbjct: 1 MIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNNCRI- 59
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR---------DWKADSLRR 120
+ + I+ R K +++T RS A + D+ RR
Sbjct: 60 ---IGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAARR 116
Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTIN+LY D + +IDYVGG D+RN+ ++ IGD ED +R+LR +F G
Sbjct: 117 DFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKFAEILG- 175
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
NI+ A K K L+ SS R+ E NK+ M GI + +F +
Sbjct: 176 LNIEKTTAKAIRKHKTELEKASSSRMLEEYNKIFRTWKTSLIFQGMAEHGILEVLFKE-- 233
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
++ E+ E I L + + ++ +
Sbjct: 234 AFDKERKKNSNFGEKFLETNIGKRLAIADKLLTEREEMTPHIFYSLIFS 282
>gi|292898512|ref|YP_003537881.1| poly(A) polymerase [Erwinia amylovora ATCC 49946]
gi|291198360|emb|CBJ45466.1| poly(A) polymerase [Erwinia amylovora ATCC 49946]
Length = 457
Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats.
Identities = 58/298 (19%), Positives = 107/298 (35%), Gaps = 20/298 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R
Sbjct: 28 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQMRKLFRNCRL--- 84
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL---------------ITDGRYAKVVFTRDWKAD 116
+ ++ + ++ T R +G + + D
Sbjct: 85 -VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQVVEDRNSSHRDQNGMLLRDNIFGSIEDD 143
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRD TIN+LY V DYVGGL+DL+ I+ IGD R ED +R+LR RF A
Sbjct: 144 AQRRDLTINSLYYSVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFAA 203
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G A I + + L + +
Sbjct: 204 KLDMSIAAGTGEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLEYQLFQPLFP 263
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
+ + + S + + D+ + + ++ + + + + ++
Sbjct: 264 IITRYFTEQGDSNMERMILLVLKNTDTRIHNQMRVNPAFLFAAMFWYPQLEMAQKFAQ 321
>gi|146283614|ref|YP_001173767.1| poly(A) polymerase [Pseudomonas stutzeri A1501]
gi|145571819|gb|ABP80925.1| poly(A) polymerase [Pseudomonas stutzeri A1501]
Length = 466
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 20/240 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++++ L + ++ +VGG VRD L+ L+ +D D+AT+ P++V F R
Sbjct: 42 SRHAVSVVERLQQAGYEAYVVGGCVRDLLLQLNPKDYDVATSATPEQVRAEFRNARV--- 98
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADS 117
+ + + ++ ++ T R++ + GR + + D+
Sbjct: 99 -IGRRFKLVHVHFGREIIEVATFRANHPEEDDEDASQLASRNESGRILRDNVYGTLEDDA 157
Query: 118 LRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINALY D + I D+ G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 158 QRRDFTINALYYDPTSERILDHTRGVHDIRNRLIRLIGDPEQRYQEDPVRMLRAVRFAAK 217
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + L + S R++ E KL + +F +F
Sbjct: 218 LDF-EIERHSAEPIADLAELLDGIPSARLFDETLKLFLGGKAERTFELLLEYDLFAPLFP 276
>gi|330446882|ref|ZP_08310533.1| poly(A) polymerase I [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491073|dbj|GAA05030.1| poly(A) polymerase I [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 447
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 69/396 (17%), Positives = 138/396 (34%), Gaps = 46/396 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK + +VGG VRD L++ +D DIAT P+ + ++F R
Sbjct: 17 SENALKVLYRLNKAGYDAYLVGGGVRDLLLDKQPKDFDIATNATPEEIKKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA---------------- 115
+ I+ + ++ T R A + K
Sbjct: 74 -IGRRFRLAHILFGRDIIEVATFRGHHSDAPVQATIPKDSKQKPQISSRNREGMLLRDNV 132
Query: 116 ------DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168
D+ RRDFTINALY + V DY G+ DL NR ++ +GD R ED +R+L
Sbjct: 133 YGTIDEDAERRDFTINALYYSVKDFTVTDYANGVEDLNNRIVRLMGDPETRYREDPVRML 192
Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228
R RF +ID + L+ + + R++ E KLL++ L +
Sbjct: 193 RAVRFAVKLDM-DIDPATAAPIQELSSLLQDIPAARLFEESLKLLQSGQGLETYRMLREY 251
Query: 229 GIFKEIFLDVQEI-----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+F+++F + + ++ + + + +++ + ++ +
Sbjct: 252 NLFQQLFPLLADHFTEDQSSQTEKMIEHILASTDKRIAEDKRVNPAFIYAAMLWYPMMIR 311
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
++ L + + + + + I + + +L+
Sbjct: 312 AEEVSFASGLSFYDAFMV---ASNDILDDQVRTIAIPRRHTTTVRDIWQQQLRFARRSGK 368
Query: 338 NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373
+ + G D+ +
Sbjct: 369 RAFKTMEHPKFRAAYDFLEMRALFE----GHDIKEL 400
>gi|15618873|ref|NP_225159.1| Poly A polymerase [Chlamydophila pneumoniae CWL029]
gi|4377290|gb|AAD19102.1| Poly A Polymerase [Chlamydophila pneumoniae CWL029]
Length = 430
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/348 (21%), Positives = 138/348 (39%), Gaps = 11/348 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
++++ L K + IVGG +RD L+N + +D DI+T+ P+ + IF
Sbjct: 41 FSPHALSVIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAIFKNC---- 96
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYA 129
I + I K+ +++T RS + K + D LRRDFTIN L+
Sbjct: 97 ILVGKRFRLAHIRFSKQIIEVSTFRSGSTDEDVLITKDNLWGTPEEDVLRRDFTINGLFY 156
Query: 130 DQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + ++IDY GG+NDLRNR ++ IGD R +D +R+LR + + +++
Sbjct: 157 DPEHEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSR-SPFTVETQTQE 215
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A I ++ L S R++ E+ K+L + N + + + +F + + +
Sbjct: 216 ALIACRQELIKSSQARVFEELIKMLNSGAAKNFFQLLIENHLLEILFPYMDKAFRLNRAL 275
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--AKKFSLPREIRYFLISFFNCNFNQK 306
+ + D +L+ +I + ++ +S + K
Sbjct: 276 EEQTATYLKALDDKILKKEAEYDRHQLMAIFLFPLVNFNVRYKHQKHPYLSLTSVFDYIK 335
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN--LTHQDTCFILQVL 352
F K I I + + + F + L
Sbjct: 336 NFLEQFFADSFTSCSKKNFILTALILQMQYRLTPLIPTKKALFFNKKL 383
>gi|170719922|ref|YP_001747610.1| poly(A) polymerase [Pseudomonas putida W619]
gi|169757925|gb|ACA71241.1| poly(A) polymerase [Pseudomonas putida W619]
Length = 462
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/240 (26%), Positives = 108/240 (45%), Gaps = 19/240 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R
Sbjct: 38 FSRHAVNIVERLQGAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARI-- 95
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADS 117
+ + + ++ ++ T R+ D GR + + D+
Sbjct: 96 --IGRRFKLVHVHFGREIIEVATFRAHHSEDDQGDSHRSSHNASGRILRDNVYGSLEEDA 153
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINALY D +V+DY G++D+RNR ++ IGD HR ED +R+LR RF A
Sbjct: 154 QRRDFTINALYYDPVSERVLDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAK 213
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + R++ E KL + + + +F+ +F
Sbjct: 214 LDF-GIEKHTFQPIRGLAPLLREIPPARLFEECLKLFLSGQGAIVFEMLVDLALFEPLFP 272
>gi|292491190|ref|YP_003526629.1| poly(A) polymerase [Nitrosococcus halophilus Nc4]
gi|291579785|gb|ADE14242.1| poly(A) polymerase [Nitrosococcus halophilus Nc4]
Length = 402
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 10/228 (4%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
L L K + +VGG VRD L+ +D D+ T P+++ +F R +
Sbjct: 2 LYRLKKAGFSAYLVGGCVRDLLLGHEPKDFDVTTDARPEQIRDLFRSCRL----VGRRFR 57
Query: 79 TIKIICRKKYFDITTLRSDL----ITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQG 133
+ + ++ T R +GR + D+ RRDF++NALY + +
Sbjct: 58 LAHVRFGRDIIEVATFRGPPGKGLSENGRIVSDNVYGTLEQDAWRRDFSVNALYYNIRDF 117
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
V+DY GG+ DL+ ++ IGD R ED +R+LR RF A G
Sbjct: 118 SVVDYTGGMEDLKAGRLRLIGDPVTRYREDPVRMLRAVRFAAKLGFTFHPESEKPI-WDL 176
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
L+ + S R++ E+ KL + + + +F+ +F +
Sbjct: 177 APSLQEIPSARLFEEVLKLFLGGCAVQTFELLRHFHLFQWLFPQTEAC 224
>gi|282849854|ref|ZP_06259238.1| HD domain protein [Veillonella parvula ATCC 17745]
gi|282580791|gb|EFB86190.1| HD domain protein [Veillonella parvula ATCC 17745]
Length = 472
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 90/460 (19%), Positives = 158/460 (34%), Gaps = 72/460 (15%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + +
Sbjct: 3 EQANRILTVLEEAGHEAYIIGGAVRDVLMHQKPHDFDIVTSARPDTVIEVLRGHDIQTTD 62
Query: 73 -TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYA 129
S+G + K ++I T R++ + T + D LRRDFT+N +
Sbjct: 63 LVGKSFGVVVATLEGKQYEIATYRTERYGADSHRPEEITYADTLEEDVLRRDFTVNGMAM 122
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
++ G+VID VGG D++++T++ IG+A R ED LR+ R RF A D L A
Sbjct: 123 NRYGEVIDLVGGRRDIKHKTLRTIGNAQKRFEEDALRLFRACRFVAKLDFLP-SKDLLEA 181
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE------ISL 243
KA + LS ER+ +EIN+L+ + + + + V+ L
Sbjct: 182 MPKAFHRVPGLSLERVRNEINRLMLEPAVAKGLDVLVQSRLAECSCRVVENGVAREVPIL 241
Query: 244 DQLSQVIEAEQ----------------VFEWKIDSLLRFIVLISW--------------- 272
+L ++ Q V + D +LR+ L+
Sbjct: 242 PELYHLVNLPQEKDFHEFDGWYHTLAVVSHTEPDLVLRWGALLHDVAKGMPAVRAVINGR 301
Query: 273 --------QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK- 323
+ ++ + P+ + + +
Sbjct: 302 LTDRGHDTLGAEMAETLLTRLGYPKAFVQRVAWIVKNHMRFHYFVQNGDANEKKWLRKEA 361
Query: 324 -------------VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
K+ A + + + P+ D+
Sbjct: 362 RSGEFRDSQIMRTAWEQLAKVCAADVLGCGKPYSSTDGTLAFGECMADLSLEMPVHTKDL 421
Query: 371 ------VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
+K GK+VG L + + N + L
Sbjct: 422 NYDERVIKI---AGKQVGEGLQYLLGQVQNGVIPNKPDAL 458
>gi|237729447|ref|ZP_04559928.1| poly(A) polymerase I [Citrobacter sp. 30_2]
gi|226909176|gb|EEH95094.1| poly(A) polymerase I [Citrobacter sp. 30_2]
Length = 472
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 18/240 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL I+ IG+ R ED +R+LR RF A
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLEEGIIRLIGNPETRYREDPVRMLRAVRFAAKLD 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E KLL+A + +F+ +F +
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEEALKLLQAGYGYETYKKLREYSLFQPLFPTI 286
>gi|21231215|ref|NP_637132.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768778|ref|YP_243540.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
campestris str. 8004]
gi|188991892|ref|YP_001903902.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
campestris str. B100]
gi|21112860|gb|AAM41056.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66574110|gb|AAY49520.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
campestris str. 8004]
gi|167733652|emb|CAP51857.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
campestris]
Length = 455
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 14/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + + +VGGAVRD L+ +D D+AT+ P+ V +F R
Sbjct: 39 SPNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATSATPEEVKALFRNCRL--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------TDGRYAKVVFTRDWKADSLRRDFT 123
+ ++ ++ ++ T R+++ +GR + + D++RRDFT
Sbjct: 96 -IGRRFRLAHVVFGREIIEVATFRANIDDGSGDRELDNGRLVRDNVYGTIEDDAIRRDFT 154
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DY GG D++ R +K IGD R ED +R+LR R A +I
Sbjct: 155 CNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLAAKLNF-DI 213
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
++ + L + R++ EI KL + + + + + G+ +F +
Sbjct: 214 EAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGALFPE 268
>gi|77164400|ref|YP_342925.1| Poly(A) polymerase, PcnB [Nitrosococcus oceani ATCC 19707]
gi|254434825|ref|ZP_05048333.1| poly(A) polymerase subfamily [Nitrosococcus oceani AFC27]
gi|76882714|gb|ABA57395.1| Poly(A) polymerase, PcnB [Nitrosococcus oceani ATCC 19707]
gi|207091158|gb|EDZ68429.1| poly(A) polymerase subfamily [Nitrosococcus oceani AFC27]
Length = 401
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 10/228 (4%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
L L K + +VGG VRD L+ +D D+ T P+++ +F R +
Sbjct: 2 LYRLKKAGFSAYLVGGCVRDLLLGREPKDFDVTTDARPEQIRDLFRSCRL----VGRRFR 57
Query: 79 TIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQG 133
+ ++ + T R +GR + D+ RRDF++NALY + +
Sbjct: 58 LAHLRFGREIIETATFRGPPEEGLSENGRIVSDNVYGTLEQDAWRRDFSVNALYYNIRDF 117
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
V+DY G+ DL ++ IGD R ED +R+LR RF A G +
Sbjct: 118 SVVDYTRGMEDLEAGRLRLIGDPVTRYREDPVRMLRAVRFAAKLGFTLHPDSETPI-WEL 176
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
L+ + S R++ EI KL + + +F+ +F +
Sbjct: 177 APSLQEIPSARLFEEILKLFLGGCAVQTFELLRRFNLFRWLFPQTEAC 224
>gi|77359558|ref|YP_339133.1| poly(A) polymerase I [Pseudoalteromonas haloplanktis TAC125]
gi|76874469|emb|CAI85690.1| poly(A) polymerase I [Pseudoalteromonas haloplanktis TAC125]
Length = 432
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 18/244 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ I +L L G + +VGG +RD L+ +D D+ T P++V ++F R
Sbjct: 14 FSPNAIKVLYRLKDGGFDAYLVGGCIRDVLLGQQPKDFDVVTNATPEQVKKLFRNCRL-- 71
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSL 118
+ I+ ++ ++ T+R G+ + + D+
Sbjct: 72 --IGRRFRLAHIVFGREIIEVATMRGHHEAPEDKNQISQSSEQGQLLRDNVFGSIEEDAE 129
Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDF+INALY + DY GL ++ + I+ IGD R ED +R+LR RF
Sbjct: 130 RRDFSINALYYSINDFCIYDYANGLAAIKAKQIELIGDPETRYREDPVRMLRAVRFATKL 189
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
I + L + R++ EI KL + + G+F +F +
Sbjct: 190 DM-KIAPNSEKPMTALASLLDNIPPARLFEEILKLFLNGKAQANYLMLRKYGLFNSLFPE 248
Query: 238 VQEI 241
+ I
Sbjct: 249 LNRI 252
>gi|310764989|gb|ADP09939.1| poly(A) polymerase I [Erwinia sp. Ejp617]
Length = 459
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 58/298 (19%), Positives = 108/298 (36%), Gaps = 20/298 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R
Sbjct: 28 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGTKPKDFDVTTNATPDQMRKLFRNCRL--- 84
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL---------------ITDGRYAKVVFTRDWKAD 116
+ ++ + ++ T R +G + + D
Sbjct: 85 -VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQVVEDRNSSQRDQNGMLLRDNIFGSIEDD 143
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRD TIN+LY + V DYVGGL+DL+ I+ IGD R ED +R+LR RF A
Sbjct: 144 AQRRDLTINSLYYNVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFAA 203
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
A I + + L + +
Sbjct: 204 RLDMSIAAETAEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLEYQLFQPLFP 263
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
+ + + S + + D+ + + ++ + + + + ++I
Sbjct: 264 IITRCFTEQGDSNMERMILLVLKNTDTRIHNQMRVNPAFLFAAMFWYPQLEMAQKIAQ 321
>gi|237653425|ref|YP_002889739.1| poly(A) polymerase [Thauera sp. MZ1T]
gi|237624672|gb|ACR01362.1| poly(A) polymerase [Thauera sp. MZ1T]
Length = 456
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 65/285 (22%), Positives = 123/285 (43%), Gaps = 17/285 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ ++L + K+ +VGGAVRD L+ +D D+AT+ P+ V F ++R
Sbjct: 37 SPAARKVCAVLQEKGFKAFVVGGAVRDLLIGHPPKDYDVATSATPEEVRAAFRRSRI--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL-------ITDGRYAKVVFTRDWKADSLRRDFTI 124
+ + ++ + +++T R+ GR + + + D+ RRDFT+
Sbjct: 94 -IGRRFKIVHVMSGPETIEVSTFRASQDAESADTDEHGRVLRDNVFGNQQEDATRRDFTV 152
Query: 125 NALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
NALY D + I DY G+ D++ +T++ IGD R ED +R+LR R A G ID
Sbjct: 153 NALYYDPGTETIVDYHHGVADIQQKTLRMIGDPRTRYREDPVRMLRAVRLAAKLG-LTID 211
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----VQ 239
+ L+ + + R++ E+ KLL + + L + + G+ + ++
Sbjct: 212 PAARQPIREMGPLLENVPAARLFDEMLKLLFSGHSLKCLQQLRAEGLHHGLLPLLDVILE 271
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284
+ ++ + + D + L S +L
Sbjct: 272 QPMGERFVTLALENTDERVREDKSVSPGFLFSTLLWHEVLKTWDN 316
>gi|327482009|gb|AEA85319.1| poly(A) polymerase [Pseudomonas stutzeri DSM 4166]
Length = 463
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 20/240 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++++ L + ++ +VGG VRD L+ L+ +D D+AT+ P++V F R
Sbjct: 39 SRHAVSVVERLQQAGYEAYVVGGCVRDLLLQLNPKDYDVATSATPEQVRAEFRNARV--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADS 117
+ + + ++ ++ T R++ + GR + + D+
Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRANHPEEDDEDASQLALRNESGRILRDNVYGTLEDDA 154
Query: 118 LRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINALY D + I D+ G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 155 QRRDFTINALYYDPTSERILDHTRGVHDIRNRLIRLIGDPEQRYQEDPVRMLRAVRFAAK 214
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + L + S R++ E KL + +F +F
Sbjct: 215 LDF-EIERHSAEPIADLAELLDGIPSARLFDETLKLFLGGKAERTFELLLEYDLFAPLFP 273
>gi|167037540|ref|YP_001665118.1| polynucleotide adenylyltransferase region [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115955|ref|YP_004186114.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166856374|gb|ABY94782.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929046|gb|ADV79731.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 388
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/394 (15%), Positives = 118/394 (29%), Gaps = 31/394 (7%)
Query: 14 DLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
DLI +L ++ K + KS IVGG VRD L+ + DID+ + I
Sbjct: 9 DLIKLLKEISSKTKIKSYIVGGVVRDFLLGVKNLDIDVVVEGDGIKFAYTLLSYLKGDIV 68
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
++ T + D+ + R + + + D RRDFTIN L D
Sbjct: 69 VYEAFRTATLSYDGFSIDVISARKEYYERSAALPTIEFSNIYDDMARRDFTINTLAYDVI 128
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
I + + + + ++D RI R R+ Y + +
Sbjct: 129 EGKILDYFNGLEDLKKGLVRV-LHSKSFIDDPTRIFRAIRYATRYAFEIEKKTHNLMKES 187
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ + + L E K M + I I + + +
Sbjct: 188 IENIRLLSADRIRNEIFLILKEIKA-----KEMIDKFISYGIDKVIFDGITLNTRNLDRV 242
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ E ++ L + D I + +
Sbjct: 243 DANLEVELYRFLVLFYYLKESDINKIEKRL----------------------RVNKIYLK 280
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL--SDIIHWKKPLFPLTGDDV 370
K +++ I T ++ ++V+ K + G D+
Sbjct: 281 ALKDLVFLREQLNCQNKNIRKIRETIEETKEEVLRAIEVMEGEKAEKIIKGKLTVKGKDI 340
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
G+PP G ++ + + IN E++
Sbjct: 341 KNLGLPPSPLYGELMDNVFEAKINGIIATRDEEI 374
>gi|330900398|gb|EGH31817.1| poly(A) polymerase [Pseudomonas syringae pv. japonica str.
M301072PT]
Length = 363
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R
Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ D GR + + D+ RR
Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF 218
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + S R++ E+ KL + + + + +F+ +F
Sbjct: 219 -GIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274
>gi|157147427|ref|YP_001454746.1| poly(A) polymerase I [Citrobacter koseri ATCC BAA-895]
gi|157084632|gb|ABV14310.1| hypothetical protein CKO_03226 [Citrobacter koseri ATCC BAA-895]
Length = 454
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 72/366 (19%), Positives = 134/366 (36%), Gaps = 26/366 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNDSDRATSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLD 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-- 236
I + + L + R++ E KLL+A + +F+ +F
Sbjct: 210 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGFETYKKLREYSLFQPLFPTI 268
Query: 237 -----DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291
+ + +++++ + D + L + +L MA+K + +
Sbjct: 269 TRYFTENGDSAMERIIAQVLKNTDNRIHNDMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 328
Query: 292 RYFLISFFNCNFNQKT-LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
Y+ N I K + +L++ +
Sbjct: 329 AYYDAFALAMNEVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388
Query: 351 VLSDII 356
+
Sbjct: 389 AYDLLA 394
>gi|261250263|ref|ZP_05942839.1| poly(A) polymerase [Vibrio orientalis CIP 102891]
gi|260939379|gb|EEX95365.1| poly(A) polymerase [Vibrio orientalis CIP 102891]
Length = 453
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 69/355 (19%), Positives = 133/355 (37%), Gaps = 22/355 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R
Sbjct: 35 SDNALKVLYRLNGAGFDAYLVGGGVRDLLLGQQPKDFDIATNATPEQIRQLFKNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R G + D+ RRD
Sbjct: 92 -IGRRFRLAHIMFGRDIIEVATFRGHHQEPNKNVSQQSKEGMLLRDNVYGTIDEDAERRD 150
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NA+Y + + DY GG DL ++ I+ +GD R ED +R+LR RF
Sbjct: 151 FTVNAMYYNIGDYSIHDYAGGHEDLEDKLIRLLGDPETRYREDPVRMLRAIRFAVKLDF- 209
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+ D + L+ + + R++ E K+L++ + L M +F+++F + E
Sbjct: 210 DIEEDTAAPIEEMATLLQDIPAARLYEESLKMLQSGHGLETYHLMREYNLFQQLFPTIAE 269
Query: 241 ISLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
++ EQ+ + +DS R +M + +
Sbjct: 270 FFTEEYDS--PTEQMLDLVLDSTDQRIEEGKRINPAFMFAAMLWYPLQEKAKQLMETRKL 327
Query: 300 NCNFNQKTLSIP---EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ S + + + + L L + ++++
Sbjct: 328 SSYDAIMEASNYILDDQVRTIAIPRRHTATIREIWQLQLRMPRRNGKRAFRLMEL 382
>gi|15835306|ref|NP_297065.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg]
gi|270285478|ref|ZP_06194872.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg]
gi|270289489|ref|ZP_06195791.1| poly(A) polymerase family protein [Chlamydia muridarum Weiss]
gi|301336875|ref|ZP_07225077.1| poly(A) polymerase family protein [Chlamydia muridarum MopnTet14]
gi|7190722|gb|AAF39507.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg]
Length = 425
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 7/232 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
++++ L K ++ IVGG +RD L+ +D D++T+ P+ V +F
Sbjct: 42 FSPHALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDVSTSAKPEEVKALFKNC---- 97
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYA 129
I + I + +++T RS + K + D LRRDFTIN L+
Sbjct: 98 ILVGKRFRLAHIRFPNQIIEVSTFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFY 157
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + +IDY GG+ DL+NR ++ IGD R +D +R+LR + + Y
Sbjct: 158 DPSSEVIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEA 217
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+ + S R++ E+ K+L + I + +F + +
Sbjct: 218 LRESRHELI-KSSQPRVFEELIKVLSSGESTIFFQLASEYRILEILFPYMSK 268
>gi|284009161|emb|CBA76198.1| poly(A) polymerase I [Arsenophonus nasoniae]
Length = 502
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/384 (19%), Positives = 135/384 (35%), Gaps = 42/384 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN ++ +VGG+VRD L+ +D D+ T P+++ ++F R
Sbjct: 77 SDNALKVLYRLNNAGYEAYLVGGSVRDLLLGKKPKDFDVTTNATPEQIRKLFRNCRL--- 133
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR-------------DWKADSL 118
+ I+ + ++ T R K + + + + D++
Sbjct: 134 -VGRRFRLAHIMFGYEIIEVATFRGSHEQTDTNNKDMAHKAQSGMLLRDNIFGNIEDDAI 192
Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTIN+LY + DYVGG DL N I+ IGD R ED +R+LR RF
Sbjct: 193 RRDFTINSLYYRINDFTLRDYVGGFEDLNNGMIRLIGDPKIRYREDPVRMLRAIRFACKL 252
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+ ID++ + LK + S R++ E KLL+ + +F+ +F
Sbjct: 253 NMQ-IDAETAKPIPQLAYLLKDIPSARLFEESLKLLQTGQGYQTYQQLKRYNLFQSLFPL 311
Query: 238 VQE-------------ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284
V+ I+ + + L ++ + LS
Sbjct: 312 VERHFTANNDSPMELIINQVLQNTDYRIKNNKRVNPAFLFATMLWYPLVEHAERLSQESG 371
Query: 285 FSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLF-----YLYGDKVMIAKLKIFLA 334
+ + ++ SI G K
Sbjct: 372 LPYYEAFAIAMNDILDEQCRSIAIPKRLTSIMRDIWQLQLRLPRRQGKKADKLLEHPKFR 431
Query: 335 LHYNNLTHQDTCFILQVLSDIIHW 358
++ L + + L ++ HW
Sbjct: 432 AAFDLLELRANVEKRRELEELAHW 455
>gi|15836499|ref|NP_301023.1| poly A polymerase [Chlamydophila pneumoniae J138]
gi|16752066|ref|NP_445432.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39]
gi|7189807|gb|AAF38681.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39]
gi|8979340|dbj|BAA99174.1| poly A polymerase [Chlamydophila pneumoniae J138]
Length = 430
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/348 (21%), Positives = 138/348 (39%), Gaps = 11/348 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
++++ L K + IVGG +RD L+N + +D DI+T+ P+ + IF
Sbjct: 41 FSPHALSVIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAIFKNC---- 96
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYA 129
I + I K+ +++T RS + K + D LRRDFTIN L+
Sbjct: 97 ILVGKRFRLAHIRFSKQIIEVSTFRSGSTDEDVLITKDNLWGTPEEDVLRRDFTINGLFY 156
Query: 130 DQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + ++IDY GG+NDLRNR ++ IGD R +D +R+LR + + +++
Sbjct: 157 DPEHEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSR-SPFTVETQTQE 215
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A I ++ L S R++ E+ K+L + N + + + +F + + +
Sbjct: 216 ALIACRQELIKSSRARVFEELIKMLNSGAAKNFFQLLIENHLLEILFPYMDKALRLNRAL 275
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--AKKFSLPREIRYFLISFFNCNFNQK 306
+ + D +L+ +I + ++ +S + K
Sbjct: 276 EEQTATYLKALDDKILKKEAEYDRHQLMAIFLFPLVNFNVRYKHQKHPYLSLTSVFDYIK 335
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN--LTHQDTCFILQVL 352
F K I I + + + F + L
Sbjct: 336 NFLEQFFADSFTSCSKKNFILTALILQMQYRLTPLIPTKKALFFNKKL 383
>gi|312200959|ref|YP_004021020.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Frankia sp. EuI1c]
gi|311232295|gb|ADP85150.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Frankia sp. EuI1c]
Length = 517
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 79/476 (16%), Positives = 157/476 (32%), Gaps = 82/476 (17%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMN-----LS------------------------- 44
+ + +VGG+VRD+L+
Sbjct: 27 ADELGRIFAAHGHTLHLVGGSVRDALLGDLAQARPASSARPAATTPAKPAATTPAKPAGE 86
Query: 45 VQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG-R 103
D+D T P+RV+ + I++GT+ + ++TT R++ G R
Sbjct: 87 PPDLDFTTDARPERVLEMTRGWAEATWEAGIAFGTVGLARAGTRLEVTTYRAESYDRGSR 146
Query: 104 YAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILE 162
V + +AD LRRDFT+NA+ + +D GG+ DL ++ G + +
Sbjct: 147 NPTVSYGDSLEADLLRRDFTVNAMAVSVPDHEFVDLFGGMADLARGVLRTPGPPEVSLDD 206
Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222
D LRILR RF A G + + I++ ER+ E+ KL+ + +P +
Sbjct: 207 DPLRILRAIRFEAKLGLTPTPELVEAMRARVDRLR-IVAPERVRDELRKLIVSADPDRGL 265
Query: 223 VHMYNGGIFKEIFLDV-------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVL 269
+ + G + ++ +++ L+ + +A ++ + D +LR+ L
Sbjct: 266 QRLVDVGAAAVVLPELPALRMEIDEHHQHKDVYTHTLTVLRQAIELEDDGPDEVLRWAAL 325
Query: 270 ISWQDKKSILSM----------------------AKKFSLPREIRYFLISFFNCNFNQKT 307
+ K P+++ + +
Sbjct: 326 LHDIGKPRTRRHAAGGGVSFHHHEVVGRDMTRKRLAALRFPKDVGDSITLLVFLHLRFHG 385
Query: 308 LSIPEIKK---LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI--------- 355
E Y++ + +L + + + + +
Sbjct: 386 YGTGEWTDAAVRRYVHDAGPQLERLHKLVRSDCTTRNKRKAAMLARHYDSLEERIAALAA 445
Query: 356 -IHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
L+GDD+++ G+ P + VG H + + LLR
Sbjct: 446 QEEISAIRPELSGDDIMEVLGLRPSRLVGEARQHMLDFRFDMGLVGRDAAVAELLR 501
>gi|220934061|ref|YP_002512960.1| Polynucleotide adenylyltransferase [Thioalkalivibrio sp. HL-EbGR7]
gi|219995371|gb|ACL71973.1| Polynucleotide adenylyltransferase [Thioalkalivibrio sp. HL-EbGR7]
Length = 465
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 65/246 (26%), Positives = 108/246 (43%), Gaps = 22/246 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +L L + ++C+VGG VRD L+ +D D+AT P++V ++F R
Sbjct: 38 SKSALKVLYRLREAGFRACLVGGGVRDLLLGREPKDFDVATDAHPEQVRQLFRNCRL--- 94
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI----------------TDGRYAKVVFTRDWKA 115
+ + ++ ++ T R+ DGR + +
Sbjct: 95 -IGRRFRLAHVQFGREIIEVATFRAPHEVLNGDDDEEFNGDALVEDGRIIRDNVYGTIEQ 153
Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
D+ RRDFTINALY D V+DY GG+ DL+ ++ IGD R ED +R+LR RF
Sbjct: 154 DAWRRDFTINALYYDIEDFSVVDYAGGMADLKAGVLRLIGDPEVRFREDPVRMLRAVRFA 213
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
G +D A + L+ ++ R++ E KL + L + +F+ +
Sbjct: 214 GKLGF-RLDIACEQAIPRMAGLLEEVAPARLFDEAIKLFHSGYGLQTFEMLRRHDLFRFL 272
Query: 235 FLDVQE 240
F +E
Sbjct: 273 FPATEE 278
>gi|302392437|ref|YP_003828257.1| polynucleotide adenylyltransferase region [Acetohalobium arabaticum
DSM 5501]
gi|302204514|gb|ADL13192.1| Polynucleotide adenylyltransferase region [Acetohalobium arabaticum
DSM 5501]
Length = 888
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 76/416 (18%), Positives = 155/416 (37%), Gaps = 24/416 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM-RIFSKTRYKVI 71
L I + + E IVGG VRD ++ + D DI + + + +VI
Sbjct: 473 KLLSEIGKIADNLELDVYIVGGFVRDLILGVENFDFDIVVEGNGIKFARELAEELEGEVI 532
Query: 72 PTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+GT + R D+ + R + V D K D RRDFT+NAL
Sbjct: 533 EEHQEFGTACVATRLGLKLDVASCRVEYYQSPGALPEVEASDLKQDLFRRDFTLNALAIK 592
Query: 131 QQGKV----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSD 185
+ ID+ GG DL I+ + + ++D RI R RF Y + +
Sbjct: 593 LNSERFGKLIDFFGGKEDLEAGLIRILH--NFSFIDDPTRIFRALRFVNRYDFELGQITR 650
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--- 242
L+ +K ++ +S R+ +E+ +L+ + + + + K + +
Sbjct: 651 ELMEHAIDQKVVEGVSLGRLSNELELILKEETAAEILSDLEEFDLLKFFHPQLSWTAKQS 710
Query: 243 -----LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+ + +E ++ E L ++L++ S+ + + +I +
Sbjct: 711 KLASEIPWAERWVEELEIEEELAVWQLYLLLLVNPLSVAEAKSLLTELKISNDIIAKVEF 770
Query: 298 FFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ + + L ++ K + + ++L + N +D ++
Sbjct: 771 IKESDKEKLELLREFNVQPSEVYNSLKSLSLEELVYLVIVSENTEVKDWIEF-----YLL 825
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
++ +TG D+++ G PG L K + +N + + E + L K +
Sbjct: 826 ELRRIELQVTGKDIIELGYEPGPCFEKALQAVKTKKLNGELE-TYEAERNYLEKYL 880
>gi|320330254|gb|EFW86239.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 467
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD ++N++ +D D+AT P++V F R
Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATNATPEQVRAEFRNARI----IG 98
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ D GR + + D+ RR
Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF 218
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + S R++ E+ KL + + + + +F+ +F
Sbjct: 219 -GIEKHSAQPIRSLAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274
>gi|209696020|ref|YP_002263950.1| poly(A) polymerase (plasmid copy number protein) [Aliivibrio
salmonicida LFI1238]
gi|208009973|emb|CAQ80291.1| poly(A) polymerase (plasmid copy number protein) [Aliivibrio
salmonicida LFI1238]
Length = 441
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 69/385 (17%), Positives = 138/385 (35%), Gaps = 32/385 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ + +VGG VRD ++ +D DIAT P+++ ++F R
Sbjct: 19 SDNALKVLYRLSNAGYDAYLVGGGVRDIILGQEPKDFDIATNATPEQIKKLFRNCRL--- 75
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR-------------DWKADSL 118
+ I+ + ++ T R + K + ++ + D+
Sbjct: 76 -IGRRFRLAHILFGRDVIEVATFRGHHKEEESEKKNISSQSKEGMLLRDNVYGTVEEDAQ 134
Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTINA+Y + + DY G+ DL+N ++ IGD R ED +R+LR RF A
Sbjct: 135 RRDFTINAMYYNIADYSIHDYANGIEDLKNGVVRLIGDPETRYREDPVRMLRAVRFAAKL 194
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
I + ++ L+ + + R++ E KLL+A LN + + +F+++F
Sbjct: 195 DM-TICNKTAEPMVELSPLLRDIPAARLFEESLKLLQAGKGLNTYLMLRKFNLFQQLFPA 253
Query: 238 VQEISLDQLSQ---------VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + + + ++ F+ + + +
Sbjct: 254 LTPFLTKEGNSQTEQMIELVLHSTDKRINSGQRVNPAFMFAAMLWYPLTAQAKEIQNENS 313
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
+ Y I + + + + + +L++ D
Sbjct: 314 KLDEYESIMEASNIMLDIQVKSTAVPRRLTATIRDIWQLQLRLPRRTGKRAFILIDQQKF 373
Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKY 373
+ K G DV
Sbjct: 374 RAAYDFLEMRGKVE----GGDVKAL 394
>gi|33591480|ref|NP_879124.1| poly(A) polymerase [Bordetella pertussis Tohama I]
gi|33571122|emb|CAE40619.1| poly(A) polymerase [Bordetella pertussis Tohama I]
gi|332380931|gb|AEE65778.1| poly(A) polymerase [Bordetella pertussis CS]
Length = 451
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 61/223 (27%), Positives = 109/223 (48%), Gaps = 12/223 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I + +L + ++ IVGGAVRD ++ L +D D+AT P+++ +F + R
Sbjct: 37 SRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + ++ ++ + +T R + GR + + D+ RRDFT+N
Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMN 152
Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY D +VIDY G+ DL+ R ++ IGD R ED +R+LR RF A +ID+
Sbjct: 153 ALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLN-GSIDT 211
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227
++ + + R++ E+ KLL + ++ + + N
Sbjct: 212 ATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRN 254
>gi|33598144|ref|NP_885787.1| poly(A) polymerase [Bordetella parapertussis 12822]
gi|33566702|emb|CAE38912.1| poly(A) polymerase [Bordetella parapertussis]
Length = 451
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 61/223 (27%), Positives = 109/223 (48%), Gaps = 12/223 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I + +L + ++ IVGGAVRD ++ L +D D+AT P+++ +F + R
Sbjct: 37 SRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + ++ ++ + +T R + GR + + D+ RRDFT+N
Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMN 152
Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY D +VIDY G+ DL+ R ++ IGD R ED +R+LR RF A +ID+
Sbjct: 153 ALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLN-GSIDT 211
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227
++ + + R++ E+ KLL + ++ + + N
Sbjct: 212 ATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRN 254
>gi|317402334|gb|EFV82909.1| Poly(A) polymerase [Achromobacter xylosoxidans C54]
Length = 424
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 12/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I + +L + ++ IVGGAVRD ++ L +D D+AT P+++ +F + R
Sbjct: 37 SRHAIKVCEVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + ++ ++ + +T R + GR + + D+ RRDFT+N
Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASEDQETDAHGRILRDNVFGTHEEDAARRDFTMN 152
Query: 126 ALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY +VID+ G+ DL+ R I+ IGD R ED +R+LR RF A ID
Sbjct: 153 ALYYDPHNEEVIDFHNGVADLKKRQIRMIGDPAKRYREDPVRMLRAVRFAAKLN-GTIDP 211
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
++ + + R++ E+ KLL + ++ + + G+ + +
Sbjct: 212 ATRQPIRTMADLIENVPASRLFDEMLKLLTCGHAMDCLRQLRADGLHNGLLPLLD 266
>gi|283783928|ref|YP_003363793.1| poly(A) polymerase [Citrobacter rodentium ICC168]
gi|282947382|emb|CBG86927.1| poly(A) polymerase [Citrobacter rodentium ICC168]
Length = 472
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 74/394 (18%), Positives = 139/394 (35%), Gaps = 48/394 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + D+ R
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A
Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVRMLRAVRFAAKLD 227
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-- 236
I + + L + R++ E KLL++ + + +F+ +F
Sbjct: 228 M-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQSGYGYETYLKLREYSLFQPLFPTI 286
Query: 237 -----DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291
+ + ++++ + D + L + +L MA+K + +
Sbjct: 287 TRYFTENGDSPMERIIAQVLKNTDNRIHNDMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 346
Query: 292 RYFLISFFNCN-----------------------FNQKTLSIPEIKKLFYLYGDKVMIAK 328
Y+ N + + K + +
Sbjct: 347 AYYDAFALAMNEVLDEACRSLAIPKRLTALTRDIWQLQLRMSRRQGKRAWKLMEHPKFRA 406
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL + + + Q + P
Sbjct: 407 AYDLLALRAEAENNPELQRLAQWWGEFQVSAPPE 440
>gi|152968724|ref|YP_001333833.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238893122|ref|YP_002917856.1| poly(A) polymerase I [Klebsiella pneumoniae NTUH-K2044]
gi|150953573|gb|ABR75603.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238545438|dbj|BAH61789.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
Length = 453
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/400 (18%), Positives = 139/400 (34%), Gaps = 30/400 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK +S +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 34 SENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGHTTDRVTSQRGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E+ KLL+A + + +F+ +F +
Sbjct: 210 M-TISPETAEPLPRLAALLHDVPPARLFEEVLKLLQAGYGYQTYMLLREYSLFQPLFPTI 268
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
++ +E K + + +
Sbjct: 269 TRYFTERGDSPMERIISQVLKNTDTRIHNDMRVNPAFLFAVMFWYPLLETAQKIAQESGL 328
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ ++ + L K + ++ L Q L + +
Sbjct: 329 AYYDAFALAMNDVLDEACRTLAIPKRITTLIRDIWQLQLRMSRRQGKRAWK--LMEHPKF 386
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398
+ D+++ G + + L + W FQ
Sbjct: 387 RA------AYDLLEL--RAGAENNHELQRLTKWW--GEFQ 416
>gi|24215701|ref|NP_713182.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira
interrogans serovar Lai str. 56601]
gi|304570488|ref|YP_001035.2| poly A polymerase [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|24196872|gb|AAN50200.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira
interrogans serovar Lai str. 56601]
Length = 487
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 79/289 (27%), Positives = 123/289 (42%), Gaps = 17/289 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D D + I+ LNK K+ IVGG VRD L+ +D D+ T P+++ +IF+ R
Sbjct: 38 MIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNNCRI- 96
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR---------DWKADSLRR 120
+ + I+ R K +++T RS A + D+ RR
Sbjct: 97 ---IGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAARR 153
Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTIN+LY D + +IDYVGG D+RN+ ++ IGD ED +R+LR +F G
Sbjct: 154 DFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKFAEILG- 212
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
NI+ A K K L+ SS R+ E NK+ M GI + +F +
Sbjct: 213 LNIEKTTAKAIRKHKTELEKASSSRMLEEYNKIFRTWKTSLIFQGMAEHGILEVLFKE-- 270
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
++ E+ E I L + + ++ +
Sbjct: 271 AFDKERKKNSNFGEKFLETNIGKRLAIADKLLTEREEMTPHIFYSLIFS 319
>gi|33603037|ref|NP_890597.1| poly(A) polymerase [Bordetella bronchiseptica RB50]
gi|33568668|emb|CAE34426.1| poly(A) polymerase [Bordetella bronchiseptica RB50]
Length = 451
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 61/223 (27%), Positives = 109/223 (48%), Gaps = 12/223 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I + +L + ++ IVGGAVRD ++ L +D D+AT P+++ +F + R
Sbjct: 37 SRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + ++ ++ + +T R + GR + + D+ RRDFT+N
Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMN 152
Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY D +VIDY G+ DL+ R ++ IGD R ED +R+LR RF A +ID+
Sbjct: 153 ALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLN-GSIDT 211
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227
++ + + R++ E+ KLL + ++ + + N
Sbjct: 212 ATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRN 254
>gi|294626060|ref|ZP_06704669.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664385|ref|ZP_06729745.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292599662|gb|EFF43790.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605849|gb|EFF49140.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 455
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 14/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + + +VGGAVRD L+ +D D+AT P+ V +F R
Sbjct: 39 SPNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATDATPEEVKALFRNCRL--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------TDGRYAKVVFTRDWKADSLRRDFT 123
+ ++ ++ ++ T R+++ +GR + + D++RRDFT
Sbjct: 96 -IGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGTIEDDAIRRDFT 154
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DY GG D++ R +K IGD R ED +R+LR R A +I
Sbjct: 155 CNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPQLRYQEDPVRMLRAVRLAAKLNF-DI 213
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
++ + L + R++ EI KL + + + + + G+ +F +
Sbjct: 214 EAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLSALFPE 268
>gi|33242334|ref|NP_877275.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183]
gi|33236845|gb|AAP98932.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183]
gi|269302757|gb|ACZ32857.1| poly(A) polymerase [Chlamydophila pneumoniae LPCoLN]
Length = 416
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/348 (21%), Positives = 138/348 (39%), Gaps = 11/348 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
++++ L K + IVGG +RD L+N + +D DI+T+ P+ + IF
Sbjct: 27 FSPHALSVIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAIFKNC---- 82
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYA 129
I + I K+ +++T RS + K + D LRRDFTIN L+
Sbjct: 83 ILVGKRFRLAHIRFSKQIIEVSTFRSGSTDEDVLITKDNLWGTPEEDVLRRDFTINGLFY 142
Query: 130 DQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + ++IDY GG+NDLRNR ++ IGD R +D +R+LR + + +++
Sbjct: 143 DPEHEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSR-SPFTVETQTQE 201
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A I ++ L S R++ E+ K+L + N + + + +F + + +
Sbjct: 202 ALIACRQELIKSSQARVFEELIKMLNSGAAKNFFQLLIENHLLEILFPYMDKAFRLNRAL 261
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--AKKFSLPREIRYFLISFFNCNFNQK 306
+ + D +L+ +I + ++ +S + K
Sbjct: 262 EEQTATYLKALDDKILKKEAEYDRHQLMAIFLFPLVNFNVRYKHQKHPYLSLTSVFDYIK 321
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN--LTHQDTCFILQVL 352
F K I I + + + F + L
Sbjct: 322 NFLEQFFADSFTSCSKKNFILTALILQMQYRLTPLIPTKKALFFNKKL 369
>gi|330721489|gb|EGG99534.1| Poly(A) polymerase [gamma proteobacterium IMCC2047]
Length = 435
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/247 (24%), Positives = 111/247 (44%), Gaps = 17/247 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + + L K+ +VGG +RD L+ + +D DI+T P+ ++++F + R
Sbjct: 25 NRHAMTAVQTLLDAGFKAYLVGGCIRDLLLGMKPKDFDISTNARPEDILKLFKRARI--- 81
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK-----------ADSLRR 120
+ + + ++ +ITT R D + + + + D+LRR
Sbjct: 82 -IGRRFRIVHVYFGREMLEITTFRGHHPEDDDHPHASRSENGQLLRDNIYGTASEDALRR 140
Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFT NALY D Q V+DY G D++NR ++ IGD R ED +R+LR RF G
Sbjct: 141 DFTANALYYDIQDNTVLDYANGYEDIQNRILRIIGDPEKRYREDPVRMLRALRFAGKLGF 200
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+I++ + L + + R++ E K+ + + M + +F++++
Sbjct: 201 -DIEAKTAAPIHELGDLLSNIPAARLFDESLKVFLSGYGSKTLPLMIDYDLFRQLYPFTD 259
Query: 240 EISLDQL 246
E
Sbjct: 260 EHLETPF 266
>gi|238918730|ref|YP_002932244.1| poly(A) polymerase I [Edwardsiella ictaluri 93-146]
gi|238868298|gb|ACR68009.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 456
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 18/238 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 33 SENALKVLYRLNKSGYEAYLVGGGVRDLLLGKRPKDFDVTTNATPEQVRKLFRNCRL--- 89
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------------DGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + + D+ R
Sbjct: 90 -VGRRFRLAHVMFGPEIIEVATFRGHHEHANEGKNIAQQGKNGMLLRDNVYGNIEEDAQR 148
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DY GGLNDL I+ IGD R ED +R+LR RF A
Sbjct: 149 RDFTINSLYYSVADFSVRDYTGGLNDLHAGQIRLIGDPETRYREDPVRMLRAVRFAAKL- 207
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ +I+ + L+ + + R++ E KLL+A + + +F+ +F
Sbjct: 208 QMSINPETAAPIAHLASLLRDIPAARLFEEALKLLQAGYGYETYLKLREYQLFQPLFP 265
>gi|315127518|ref|YP_004069521.1| poly(A) polymerase I [Pseudoalteromonas sp. SM9913]
gi|315016032|gb|ADT69370.1| poly(A) polymerase I [Pseudoalteromonas sp. SM9913]
Length = 433
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 18/244 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ I +L L G + +VGG +RD L+ +D D+ T P++V ++F R
Sbjct: 15 FSPNAIKVLYRLKDGGYDAYLVGGCIRDVLLGQQPKDFDVVTNATPEQVKKLFRNCRL-- 72
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSL 118
+ I+ ++ ++ T+R G+ + + D+
Sbjct: 73 --IGRRFRLAHIVFGREIIEVATMRGHHEAQEDKNQISQSSEHGQLLRDNVFGSIEEDAE 130
Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDF+INALY + DY GL ++ + I+ IGD R ED +R+LR RF
Sbjct: 131 RRDFSINALYYSINDFCIYDYANGLAAIKAKQIELIGDPETRYREDPVRMLRAVRFATKL 190
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+ I L + R++ EI KL + + G+FK +F +
Sbjct: 191 DMQ-IAPASEKPITALASLLDNIPPARLFEEILKLFLNGKAQQNFLMLRKYGLFKSLFPE 249
Query: 238 VQEI 241
+ I
Sbjct: 250 LDRI 253
>gi|37521022|ref|NP_924399.1| poly A polymerase [Gloeobacter violaceus PCC 7421]
gi|35212018|dbj|BAC89394.1| gll1453 [Gloeobacter violaceus PCC 7421]
Length = 582
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 77/411 (18%), Positives = 132/411 (32%), Gaps = 33/411 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV---- 70
L + + + + +VGGAVRD L+ + D+D+ + R
Sbjct: 174 LARVAATAEALDQVAYLVGGAVRDLLLGETSSDLDVVVEGRGGEAGAAPALARAIAAEDA 233
Query: 71 ---IPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ Y T +I D+ T R++ V + + D RRDFTINA
Sbjct: 234 TLRLECFEKYQTAALIWPDGFVLDLATARTEFYPRPGANPEVESASIRLDLYRRDFTINA 293
Query: 127 LYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ ++ID+ GG DLR R ++ + + +ED RI R RF G
Sbjct: 294 MAVCLNGPRAWQLIDFFGGFVDLRERIVRVLHP--NSFIEDPTRIFRAVRFALRLGFAIA 351
Query: 183 DSDGLVASIKAKKGLKILSSERIWS-EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-- 239
GL L E+ LL A L + + G + + D++
Sbjct: 352 PQTEAFIVRSVSGGLHDLYGGERLKTELGYLLAAPFWLEGLQLLDRLGALRCVHPDLRLT 411
Query: 240 ---EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+L L A + L +L++ R + +
Sbjct: 412 EALAAALVWLEGGYGAFAPLRATLPQLRLDRLLLAV--GPQAAESLPLDGHARTRQRKVR 469
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ Q S + + G + L + A+ T + +
Sbjct: 470 AALLVLAKQTDWSAAALHRHLAGLGPE---ESLLLASAIG-------QTERRQSIADYLQ 519
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
++P + GDD+ G+ PG IL + + L L
Sbjct: 520 RRREP-PLVGGDDLKALGLKPGPDFRKILDDATTAQLAGKLVDREGALAWL 569
>gi|21242528|ref|NP_642110.1| polynucleotide adenyltransferase [Xanthomonas axonopodis pv. citri
str. 306]
gi|21107981|gb|AAM36646.1| polynucleotide adenyltransferase [Xanthomonas axonopodis pv. citri
str. 306]
Length = 455
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 14/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + + +VGGAVRD L+ +D D+AT P+ V +F R
Sbjct: 39 SPNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATDATPEEVKALFRNCRL--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------TDGRYAKVVFTRDWKADSLRRDFT 123
+ ++ ++ ++ T R+++ +GR + + D++RRDFT
Sbjct: 96 -IGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGTIEDDAIRRDFT 154
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DY GG D++ R +K IGD R ED +R+LR R A +I
Sbjct: 155 CNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPQLRYQEDPVRMLRAVRLAAKLNF-DI 213
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
++ + L + R++ EI KL + + + + + G+ +F +
Sbjct: 214 EAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGALFPE 268
>gi|237809043|ref|YP_002893483.1| poly(A) polymerase [Tolumonas auensis DSM 9187]
gi|237501304|gb|ACQ93897.1| poly(A) polymerase [Tolumonas auensis DSM 9187]
Length = 521
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 68/385 (17%), Positives = 135/385 (35%), Gaps = 28/385 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + +L L+K + +VGG VRD L+ +D D+ T P+++ ++F+ R
Sbjct: 83 MISENALKVLYRLHKAGYQGYLVGGGVRDLLLGKIPKDFDVVTDAHPEQIRKLFNNCRL- 141
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLIT------------DGRYAKVVFTRDWKADS 117
+ I+ + ++ T R +G + + D+
Sbjct: 142 ---IGRRFRLAHIVFGRDIIEVATFRGHHHQVNTSKNIAEQSEEGMLLRDNVYGTIEEDA 198
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFT+NALY + + D+ GGLNDL ++ IGD R ED +R+LR RF A
Sbjct: 199 ERRDFTVNALYYNIKDFSLHDFHGGLNDLAAGKLELIGDPETRYREDPVRMLRAVRFAAK 258
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
G I + L+ + S R++ E KL A + L+ + G+F+++F
Sbjct: 259 LG-LTISDRSAEPISRLAPLLQDIPSARLFEETIKLFLAGHALSTYQLLRKFGLFQQLFP 317
Query: 237 DVQEI--------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
++ L + + + + + + +
Sbjct: 318 QAAKLLTPDNNSAYERFLEKALANSDKRVATEQPVTPTFFYATLLWGVVAMRQREISNES 377
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
+ ++ + I + F ++ + + ++
Sbjct: 378 NLPYLDSMQMAMNEAIEQQIHRVAIPRRFTSDVREIWLLQERLPRYSGKRAEKLFAQPKF 437
Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKY 373
+ L D+V +
Sbjct: 438 RAAFDFLELRAHVEPRL--RDIVAW 460
>gi|300721909|ref|YP_003711187.1| poly(A) polymerase I [Xenorhabdus nematophila ATCC 19061]
gi|297628404|emb|CBJ88969.1| poly(A) polymerase I [Xenorhabdus nematophila ATCC 19061]
Length = 455
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/384 (19%), Positives = 141/384 (36%), Gaps = 30/384 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L++ +D DIAT P++V ++F R
Sbjct: 31 SDNALKVLYRLNKSGFQAYLVGGGVRDLLLHKQPKDFDIATNATPEQVRKLFRNCRL--- 87
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118
+ I+ ++ T R G + + D+
Sbjct: 88 -VGRRFRLAHIMFGPDVIEVATFRGPHDQVESNDRSQSHKAQSGMLLRDNIFGSVEEDAA 146
Query: 119 RRDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTIN+LY + + DYVGG+ DL I+ IGD R ED +R+LR RF +
Sbjct: 147 RRDFTINSLYYGIEDFALRDYVGGMADLNEGIIRLIGDPEIRYREDPVRMLRAVRFASKL 206
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
I+ + L + S R++ E KLL++ + + +F+ +F
Sbjct: 207 DM-TIEPATAEPIPRLAFLLNDIPSARLFEESLKLLQSGQGYSTYKLLCKYNLFQPLFPM 265
Query: 238 VQ-------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
+Q + +++L + + D + L + ++ A+K S
Sbjct: 266 IQRGLTQTGDSPMEKLLVQVLKNTDHRIRDDKRVNPAFLFAAMLWYPLIEHAEKLSQEGG 325
Query: 291 IRYFLISFFNCN-FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
++Y+ N + I K + + +L++ +
Sbjct: 326 LQYYDAFALAMNDILDEQCRSIAIPKRHTTTMRDIWLLQLRLPRRQGRRANKLMEHPKFR 385
Query: 350 QVLSDIIHWKKPLFPLTGDDVVKY 373
+ ++ +
Sbjct: 386 AAYDLLELRASIEPR---HELKEL 406
>gi|45435001|gb|AAS60561.1| poly(A) polymerase [Yersinia pestis biovar Microtus str. 91001]
Length = 473
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 70/369 (18%), Positives = 136/369 (36%), Gaps = 29/369 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 50 SDNPLKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL--- 106
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ ++ + ++ T R G + + D
Sbjct: 107 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDD 165
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 166 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAA 225
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+I + + L+ + R++ E KLL++ + + +F+ +F
Sbjct: 226 KLDM-SISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 284
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + ++++ + D + L + ++ A+K +
Sbjct: 285 PLIARNFTEQHDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 344
Query: 289 REIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + I K + + +L++ +
Sbjct: 345 SGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPK 404
Query: 348 ILQVLSDII 356
++
Sbjct: 405 FRAAYDLLL 413
>gi|156975713|ref|YP_001446620.1| nucleotidyltransferase/poly(A) polymerase [Vibrio harveyi ATCC
BAA-1116]
gi|156527307|gb|ABU72393.1| hypothetical protein VIBHAR_03448 [Vibrio harveyi ATCC BAA-1116]
Length = 462
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 63/354 (17%), Positives = 134/354 (37%), Gaps = 19/354 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R
Sbjct: 37 SDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRNCRL--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK-----------ADSLRR 120
+ I+ + ++ T R +++ D+ RR
Sbjct: 94 -IGRRFRLAHIMFGRDIIEVATFRGHHQEQKNKNVSQQSKEGMLLRDNVYGTIDEDAERR 152
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTIN++Y + + DY G+ DL +R ++ IGD R ED +R+LR RF
Sbjct: 153 DFTINSMYYNIADYSIHDYARGIEDLEDRLVRLIGDPETRYREDPVRMLRAIRFAVKLDF 212
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+I+ D + L+ + S R++ E K+L++ + L + +F+++F +
Sbjct: 213 -DIEEDTAAPIEEMAPLLRDIPSARLFEESLKMLQSGHGLETYHLLREYNLFQQLFPAIA 271
Query: 240 EISLDQL--SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
E + + V + + + ++L + + +
Sbjct: 272 EHFTEDYESHTEQMLDLVLDSTDMRIEEGKRINPAFMFAAMLWYPLCAMADKLMEQHNLC 331
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
++ + + + + + + L L + ++++
Sbjct: 332 HYDAIMEASNIILYDQVRTIAIPRRHTATIREIWQLQLRLPRRNGKRAFRLMEL 385
>gi|285017990|ref|YP_003375701.1| poly(a) polymerase [Xanthomonas albilineans GPE PC73]
gi|283473208|emb|CBA15713.1| probable poly(a) polymerase protein [Xanthomonas albilineans]
Length = 481
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 14/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + + +VGGAVRD L+ +D D+AT P++V ++F R
Sbjct: 54 SPNALRVLYRLREAGFGAYLVGGAVRDLLVQWQPKDFDVATDATPEQVKQLFRNCRL--- 110
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------TDGRYAKVVFTRDWKADSLRRDFT 123
+ ++ ++ ++ T R+++ +GR + + D+LRRDFT
Sbjct: 111 -IGRRFRLAHVVYGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGSIEDDALRRDFT 169
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DY GG D++ R +K IGD R ED +R+LR R A G + I
Sbjct: 170 CNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPEQRYREDPVRMLRAVRLAAKLGFQ-I 228
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
D+ + L + R++ E+ KL + + + + + G+ +F +
Sbjct: 229 DAGTAEPIPRLAGLLAEAAPARLFEEVLKLFLSGHGVASFEGLERHGLLAALFPE 283
>gi|28899278|ref|NP_798883.1| polyA polymerase [Vibrio parahaemolyticus RIMD 2210633]
gi|308094714|ref|ZP_05891383.2| polyA polymerase [Vibrio parahaemolyticus AN-5034]
gi|308125331|ref|ZP_05774567.2| polyA polymerase [Vibrio parahaemolyticus K5030]
gi|28807502|dbj|BAC60767.1| polyA polymerase [Vibrio parahaemolyticus RIMD 2210633]
gi|308089641|gb|EFO39336.1| polyA polymerase [Vibrio parahaemolyticus AN-5034]
gi|308111753|gb|EFO49293.1| polyA polymerase [Vibrio parahaemolyticus K5030]
Length = 453
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 65/354 (18%), Positives = 130/354 (36%), Gaps = 19/354 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R
Sbjct: 35 SDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK-----------ADSLRR 120
+ I+ + ++ T R +++ D+ RR
Sbjct: 92 -IGRRFRLAHIMFGRDIIEVATFRGHHQEQKNKNISQQSKEGMLLRDNVYGTIDEDAERR 150
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTIN++Y + + DY G+ DL +R I+ IGD R ED +R+LR RF
Sbjct: 151 DFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVRFAVKLDF 210
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+I+ D + L+ + S R++ E KLL++ + L + +F+++F +
Sbjct: 211 -DIEEDTAAPIEEMAPLLREIPSARLFEESLKLLQSGHGLETYHLLREYNLFQQLFPAIS 269
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS--LPREIRYFLIS 297
E + S E + + + + +
Sbjct: 270 EHFTEDYSSHTEQMLDLVLDSTDMRIEDGKRINPAFMFAAMLWYPLCALADKLMDQHNLC 329
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
++ + + + + + + L L + ++++
Sbjct: 330 HYDAIMEASNIILDDQVRTIAIPRRHTATIREIWQLQLRLPRRNGKRAFRLMEL 383
>gi|212637095|ref|YP_002313620.1| polyA polymerase [Shewanella piezotolerans WP3]
gi|212558579|gb|ACJ31033.1| PolyA polymerase [Shewanella piezotolerans WP3]
Length = 433
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 69/236 (29%), Positives = 105/236 (44%), Gaps = 16/236 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ I +L L+K K+ +VGG VRD L+ + +D D+ T P+ + R+F R
Sbjct: 14 SENAIKVLYRLHKSGFKAYLVGGGVRDILLGMQPKDFDVVTNATPEEIKRLFRNCRL--- 70
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ TLR GR + D+ RRD
Sbjct: 71 -VGRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKTNESGRLLRDNVYGSIDEDAERRD 129
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D + Y GGL DL +RTI+ IGD R ED +R+LR RF
Sbjct: 130 FTVNALYYDISDFSIHSYGGGLQDLESRTIRLIGDPETRYREDPVRMLRAVRFATKLDM- 188
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+I+S + LK + + R++ E+ KL A M + G+F +F
Sbjct: 189 SIESAAADPIQELAPLLKDIPAARMYEEVLKLFFAGKAAQNYNMMRDFGLFAPLFP 244
>gi|209520582|ref|ZP_03269337.1| poly(A) polymerase [Burkholderia sp. H160]
gi|209498975|gb|EDZ99075.1| poly(A) polymerase [Burkholderia sp. H160]
Length = 547
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 70/379 (18%), Positives = 140/379 (36%), Gaps = 35/379 (9%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R
Sbjct: 95 PTLISRNAIRVTEGLQQAGYRAFIVGGAVRDLLLGVKPKDFDVATDATPEQVQKLFRRAR 154
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLR-------------------------SDLITDG 102
+ + + ++ + +T R + G
Sbjct: 155 I----IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAAPPKRLKRDELDRRTHAVDASG 210
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 211 RVLRDNVWGEQHEDATRRDFTINAMYYDPATETVLDYHNGMADMRARLLRMIGDPATRYR 270
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A +ID K + + + R++ E+ KL+ + + L
Sbjct: 271 EDPVRMLRVVRFAAKLDF-DIDDATRAPIEKMADLINNVPAARLFDEMLKLMLSGHALAC 329
Query: 222 IVHMYNGGIFKEIFLD----VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+ + G+ + +++ + ++ + + + L +
Sbjct: 330 LKRLRQEGLHHGLLPLLDVVLEQPTGEKFISLALSNTDARVLAGKPVSPGFLFATLLWHD 389
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ +KF E + + I K F ++ +L++
Sbjct: 390 VQQRWQKFEAEGEYPVPALHRAMDDVLDMQTEKLAIHKRFSADMREIWGLQLRLEKRSGR 449
Query: 338 NNLTHQDTCFILQVLSDII 356
L + ++
Sbjct: 450 TALKLLEHQRFRAGYDFLL 468
>gi|269138047|ref|YP_003294747.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda
EIB202]
gi|267983707|gb|ACY83536.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda
EIB202]
gi|304558091|gb|ADM40755.1| Poly(A) polymerase [Edwardsiella tarda FL6-60]
Length = 456
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 18/238 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 33 SENALKVLYRLNKSGYEAYLVGGGVRDLLLGKRPKDFDVTTNATPEQVRKLFRNCRL--- 89
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------------DGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + + D+ R
Sbjct: 90 -VGRRFRLAHVMFGPEIIEVATFRGHHEHADESKNIAQQGKNGMLLRDNVYGNIEEDAQR 148
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DY GGLNDLR I+ IGD R ED +R+LR RF A
Sbjct: 149 RDFTINSLYYSVADFSVRDYTGGLNDLRAGQIRLIGDPETRYREDPVRMLRAVRFAAKL- 207
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ +I + L+ + + R++ E KLL+A + + +F+ +F
Sbjct: 208 QMSISPETAAPIAHLASLLRDIPAARLFEEALKLLQAGYGYETYLKLREYQLFQPLFP 265
>gi|222616187|gb|EEE52319.1| hypothetical protein OsJ_34338 [Oryza sativa Japonica Group]
Length = 459
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 14/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + +VGGAVRD L+N +D D+AT P++V ++F R
Sbjct: 41 SPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRNCRL--- 97
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--------DWKADSLRRDFT 123
+ ++ ++ ++ T R++ ++ + D++RRDFT
Sbjct: 98 -IGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAIRRDFT 156
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DY GG D++ R +K IGD R ED +R+LR R A G + I
Sbjct: 157 CNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPEQRYREDPVRMLRAVRLAAKLGFQ-I 215
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+ L + R++ E+ KL + + + + + G+ +F +
Sbjct: 216 EEGTAAPIPHLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLFPE 270
>gi|188997386|ref|YP_001931637.1| Polynucleotide adenylyltransferase region [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932453|gb|ACD67083.1| Polynucleotide adenylyltransferase region [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 847
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 72/406 (17%), Positives = 143/406 (35%), Gaps = 18/406 (4%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I L K +S I+GG VRD ++N D+DI +++ + K +
Sbjct: 449 KEIGELSQKLGYRSFIIGGVVRDIILNRPNLDVDIIVEGDAPTLIKEYVKDKNYTFYIYN 508
Query: 76 SYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+ T +++ D +T R + V D RRDFTIN L +
Sbjct: 509 EFMTGQVVIENGLKLDFSTARKEEYQSPGAYPKVEKATLFEDLYRRDFTINTLAIEITSS 568
Query: 135 VIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ + + +ED +RILR RF + K + + +
Sbjct: 569 NYGILIDYFNAIKDIKEKRIRILHSLSFVEDPIRILRALRFAGRFNFKLEKNTEKLLTYS 628
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+KGL ++ + +L A AI + +K + + + +
Sbjct: 629 VEKGLLSVAPRGRIN--LELNLAFEEEKAIEILKLYDKYKVLN------KIFTQTHIDLK 680
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+++ K+ L + I + + + +F+++ +
Sbjct: 681 KEILLQKLTDNLVLLQHIKPYNYSKTTNFLYVLLSHLPTELIYENLKLYHFDKEAKLCDK 740
Query: 313 IKKLFYLYGDKVMIAKL-----KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
+ F I ++ KI L LT D +++ KKPL + G
Sbjct: 741 FVQDFNEILKLEDIFQIYKILKKINLEYLPAILTLVDEDRYKKIIKIFEVEKKPL--IKG 798
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+D+++ G+ P K NIL ++ + F+ + + ++ K +
Sbjct: 799 EDLIELGLKPSKLFKNILEDVFEKQLKEEFKNKDDAIKYIKSKYLE 844
>gi|308050920|ref|YP_003914486.1| poly(A) polymerase [Ferrimonas balearica DSM 9799]
gi|307633110|gb|ADN77412.1| poly(A) polymerase [Ferrimonas balearica DSM 9799]
Length = 449
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 16/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+K ++ +VGG VRD L++ +D D+AT P+++ ++F R
Sbjct: 35 SENALKVLYRLHKAGYEAYLVGGGVRDLLLSHQPKDFDVATNATPEQIRKLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ TLR GR + D+ RRD
Sbjct: 92 -VGRRFRLAHILFGRDIIEVATLRGHHAESSDKHARADDSGRLLRDNVYGSIDEDAERRD 150
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+N LY D V DY GG+ DL+ R ++ IGD R ED +R+LR RF
Sbjct: 151 FTVNGLYYDIADYSVRDYFGGMADLKARRLRLIGDPETRYREDPVRMLRAVRFATKLDF- 209
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
ID+ + L + + R++ E KL A L+ M G+F +F ++
Sbjct: 210 TIDTQTGKPIPALAELLSDIPAARLFEESLKLFLAGKALDNFRLMREYGLFAPMFPMQEK 269
Query: 241 I 241
+
Sbjct: 270 L 270
>gi|295134943|ref|YP_003585619.1| tRNA nucleotidyltransferase [Zunongwangia profunda SM-A87]
gi|294982958|gb|ADF53423.1| tRNA nucleotidyltransferase [Zunongwangia profunda SM-A87]
Length = 483
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/450 (16%), Positives = 153/450 (34%), Gaps = 60/450 (13%)
Query: 17 NILSLLNKGEDKS----CIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKT--RYK 69
I ++ K ++ ++GG VRD ++ + +DIDI + S+
Sbjct: 18 QIFKVIAKATEELQLDSYVIGGFVRDFILQRGNAKDIDIVAVGSGIDLALKVSQLLPHKP 77
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ +YGT + + R + + VV + D RRDFTINAL
Sbjct: 78 KVQVFKNYGTAMLRAFDMDIEFVGARKESYAEDSRNPVVENGTLEDDQNRRDFTINALAL 137
Query: 130 DQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
D GGL DL+++ I+ + +D LR+LR RF + I+
Sbjct: 138 SLNTSNYGDLLDPFGGLADLKSQLIRTPLEPGVTYSDDPLRMLRAIRFASQLNFV-IEKK 196
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
L A + K +KI+S ERI E++K+L + P ++ + K I ++
Sbjct: 197 SLDAIKEHHKRIKIISKERITEELHKILLSNRPSKGFALLHKTKLLKIILPELTALEGID 256
Query: 239 ----QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP------ 288
Q + + + + + + LR+ L+ K KK
Sbjct: 257 EIEGQRHKDNFWHTLEVVDNISQNTDNLWLRWAALLHDIGKAPTKKFHKKIGWTFHGHEF 316
Query: 289 -----------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
+ + + + ++ +
Sbjct: 317 VGSKMVFKLFKRLKMPLNDKMKLVQKMVLMSSRPIAVVDDDVTDSAVRRLIFDAGENIDD 376
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGIPP 377
+ L ++T ++ + ++ ++ P++G+++++ + I P
Sbjct: 377 LMILCEADITTKNPRRYKKYHNNFKIVRQKMKEVEERDHVRNFQPPVSGEEIMETFNIKP 436
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
++VG I K+ + L
Sbjct: 437 CREVGIIKDAIKEAILEGDIPNEHAAAREL 466
>gi|254524051|ref|ZP_05136106.1| polynucleotide adenylyltransferase [Stenotrophomonas sp. SKA14]
gi|219721642|gb|EED40167.1| polynucleotide adenylyltransferase [Stenotrophomonas sp. SKA14]
Length = 461
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 14/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + +VGGAVRD L+N +D D+AT P++V ++F R
Sbjct: 41 SPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRNCRL--- 97
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--------DWKADSLRRDFT 123
+ ++ ++ ++ T R++ ++ + D++RRDFT
Sbjct: 98 -IGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGSIEDDAVRRDFT 156
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DY GG D++ R +K IGD R ED +R+LR R A G + I
Sbjct: 157 CNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPEQRYREDPVRMLRAVRLAAKLGFQ-I 215
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+ L + R++ E+ KL + + + + + G+ +F +
Sbjct: 216 EEGTAAPIPHLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLFPE 270
>gi|289164882|ref|YP_003455020.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella
longbeachae NSW150]
gi|288858055|emb|CBJ11915.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella
longbeachae NSW150]
Length = 438
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 72/348 (20%), Positives = 141/348 (40%), Gaps = 15/348 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
S+ + +L+ L ++ IVGG+VRD L++ + +D D+AT P++V +F R
Sbjct: 31 SSNALKVLNRLIGAGFQAYIVGGSVRDLLLHKAPKDFDVATNATPNQVKSLFRNGRI--- 87
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--------LITDGRYAKVVFTRDWKADSLRRDFT 123
+ + I+ ++ ++ T RS G + D+ RRDFT
Sbjct: 88 -IGRRFKLVHILFHREIIEVATFRSHVALDENQVTNERGMLVRDNAYGSLDEDAWRRDFT 146
Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
IN+LY + +ID+ GG+ D+ R I+ IGD R ED +R+LR RF A +
Sbjct: 147 INSLYYNINDSSIIDFTGGVKDVEKRLIRMIGDPIKRYQEDPVRMLRAIRFSAKLNF-KL 205
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
++ + + +S+ R++ E+ KL + N + G+F +F Q++
Sbjct: 206 AAETAAPFPEISHLITHVSNSRLFDEMTKLYQCGNAETVQKLLIQYGLFGHLFPQTQKLL 265
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ + D+ +R ++ ++ ++++ I
Sbjct: 266 GGAYP-INALLAIALENTDTRIREDKPVTPAFLFAVFLWFPMVEHSKQLQSTGIDPLPSI 324
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
+ I E ++ + I + L ++ +LQ
Sbjct: 325 EQAMSFVISEQNRIISIPKRYSQIIREIWLLQYRFSKRLGGRAFNLLQ 372
>gi|326423862|ref|NP_760535.2| Poly(A) polymerase [Vibrio vulnificus CMCP6]
gi|319999234|gb|AAO10062.2| Poly(A) polymerase [Vibrio vulnificus CMCP6]
Length = 453
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 69/353 (19%), Positives = 132/353 (37%), Gaps = 18/353 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +L L+ + +VGG VRD L+ S +D DIAT P+++ ++F R
Sbjct: 35 SDHALKVLYRLHGAGFDAYLVGGGVRDLLLGQSPKDFDIATNATPEQLKQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWKADSLRRD 121
+ I+ ++ ++ T R +G + D+ RRD
Sbjct: 92 -IGRRFRLAHIMFGREIIEVATFRGHHQDANSQISQQSKEGMLLRDNVYGTIDEDAERRD 150
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF A
Sbjct: 151 FTINAMYYNIADYSIHDYAGGVEDLEDRLVRLIGDPETRYREDPVRMLRAIRFAAKLDF- 209
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+ D + L+ + + R++ E KLL++ + L M +F+++F +
Sbjct: 210 DIEEDTAAPIEEMAYLLRDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQMFPAISA 269
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL--PREIRYFLISF 298
+ S E + + + + +
Sbjct: 270 YFTEDYSSKAEQMLDLVLDSTDIRVEEGKRINPAYMFAAMLWYPLLELADKLMDSHNLCH 329
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
++ L + E + + + L L + ++++
Sbjct: 330 YDAVMEASNLILDEQVRSIAIPRRHTATIREIWQLQLRLPRRNGKRAFRLMEL 382
>gi|28198114|ref|NP_778428.1| polynucleotide adenyltransferase [Xylella fastidiosa Temecula1]
gi|182680742|ref|YP_001828902.1| poly(A) polymerase [Xylella fastidiosa M23]
gi|28056174|gb|AAO28077.1| polynucleotide adenyltransferase [Xylella fastidiosa Temecula1]
gi|182630852|gb|ACB91628.1| poly(A) polymerase [Xylella fastidiosa M23]
gi|307579206|gb|ADN63175.1| polynucleotide adenyltransferase [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 394
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 67/363 (18%), Positives = 140/363 (38%), Gaps = 16/363 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + + +VGGAVRD L+ +D D+AT P+++ ++F R
Sbjct: 18 SPNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRL--- 74
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT--------DGRYAKVVFTRDWKADSLRRDFT 123
+ ++ ++ ++ T R++ +GR + D+ RRDFT
Sbjct: 75 -IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIEDDATRRDFT 133
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DYVGG D+++R ++ IGD R ED +R+LR R A G I
Sbjct: 134 CNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAAKLGF-EI 192
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
++ + L ++ R++ E+ KL + + + + + + G+ +F + +
Sbjct: 193 EAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVVSFEALEDFGLIDVLFPESAKA- 251
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ ++ +V + S + ++ + ++ + +
Sbjct: 252 -LRANRSGALRRVLIEGLHSTDKRVIKDEPVSPAFLFALLLWPGFCHALVTLQLQGVQPE 310
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
Q+ + + + L N + +L++L
Sbjct: 311 EAQRRAADRVTLHHLERVALPRRFSLPMQEIWLLQNRFISRQPKRVLRLLEHPRFRAAFD 370
Query: 363 FPL 365
F +
Sbjct: 371 FLV 373
>gi|293603552|ref|ZP_06685973.1| poly(A) polymerase [Achromobacter piechaudii ATCC 43553]
gi|292817988|gb|EFF77048.1| poly(A) polymerase [Achromobacter piechaudii ATCC 43553]
Length = 460
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 12/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I + +L + + IVGGAVRD ++ L +D D+AT P+++ +F + R
Sbjct: 37 SRHAIKVCEVLRQHGYEGYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + ++ ++ + +T R + GR + + D+ RRDFT+N
Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASEDQETDEHGRILRDNVFGSQEEDAKRRDFTMN 152
Query: 126 ALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY +VIDY G+ DL+ R ++ IGD R ED +R+LR RF A ID
Sbjct: 153 ALYYDPHNEEVIDYHNGVADLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLN-GTIDP 211
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ ++ + + R++ E+ KLL + ++ + + G+ + +
Sbjct: 212 ATREPISTMAELIENVPASRLFDEMLKLLTCGHAMDCLRQLRADGLHNGLLPLLD 266
>gi|283477356|emb|CAY73272.1| methionine gamma-lyase [Erwinia pyrifoliae DSM 12163]
Length = 483
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 58/298 (19%), Positives = 108/298 (36%), Gaps = 20/298 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R
Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGTKPKDFDVTTNATPDQMRKLFRNCRL--- 108
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL---------------ITDGRYAKVVFTRDWKAD 116
+ ++ + ++ T R +G + + D
Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQVVEDRNSSQRDQNGMLLRDNIFGSIEDD 167
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRD TIN+LY + V DYVGGL+DL+ I+ IGD R ED +R+LR RF A
Sbjct: 168 AQRRDLTINSLYYNVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFAA 227
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
A I + + L + +
Sbjct: 228 KLDMSIAAETAEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLEYQLFQPLFP 287
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
+ + + S + + D+ + + ++ + + + + ++I
Sbjct: 288 IITRCFTEQGDSNMERMILLVLKNTDTRIHNQMRVNPAFLFAAMFWYPQLEMAQKIAQ 345
>gi|257061543|ref|YP_003139431.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8802]
gi|256591709|gb|ACV02596.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8802]
Length = 903
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 88/438 (20%), Positives = 157/438 (35%), Gaps = 46/438 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS-----VQDIDIATTI------------L 55
L + IVGGAVRD L++ +QDID+ L
Sbjct: 472 KLLQFAAKEAEERGWHLYIVGGAVRDLLLSEEKEFLLLQDIDLVVDGFHRSADVGAGVEL 531
Query: 56 PDRVMRIFSKTRYKVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVF 109
+ F R + T ++ K + DI T R++ V
Sbjct: 532 ASTLQETFPNARLS---IHGEFQTAALLWHKDPQLGSLWVDIATSRTEFYPYPAANPEVE 588
Query: 110 TRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165
+ D RRDFTINAL ++G+++D+ GG+ DLR+R I+ + + +ED
Sbjct: 589 ASSIRQDLYRRDFTINALAVRLTPPREGELLDFFGGMLDLRSRQIRVLHA--NSFIEDPT 646
Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
RI R RF G + + + G+ K L I +
Sbjct: 647 RIYRAVRFAVRLGFEIDPQTETYINYAIESGVYERLRIENHPAPALTTRLKAELKYI--L 704
Query: 226 YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK-KSILSMAKK 284
+ L +L L + + + W+I + R++ + +++ + L +
Sbjct: 705 EANYWKPALKLLADLDALKCLHSQVILDDILWWQIRYVSRWLRYLDPENQLEHWLLRLEV 764
Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA------KLKIFLALHYN 338
+ N +++L + L + ++ +KI +
Sbjct: 765 LISQLDATEGSKIALNLQLPKESLDRLKTLSQIELEIKQNLLECTKLSQIVKILQSYRMA 824
Query: 339 NL---THQDTCFILQ-VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
NL + +C I + + + W K PLTG+D+ G PG + IL ++
Sbjct: 825 NLILVAVRSSCEIRRTIWEYLTEWSKIQAPLTGNDLKAMGYKPGPQYKVILDKLLNATLD 884
Query: 395 SSFQLSQEDLHHLLRKLI 412
+ +++D LL LI
Sbjct: 885 GEIK-TKDDAEKLLNTLI 901
>gi|229592622|ref|YP_002874741.1| putative polynucleotide adenylyltransferase [Pseudomonas
fluorescens SBW25]
gi|229364488|emb|CAY52328.1| putative polynucleotide adenylyltransferase [Pseudomonas
fluorescens SBW25]
Length = 467
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD L+N++ +D D+AT+ P++V F R
Sbjct: 42 AVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQVRAEFRNARI----IG 97
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R+ + GR + + D+ RR
Sbjct: 98 RRFKLVHIHFGREIIEVATFRAGHPQNDEEEDTNQSSRNESGRILRDNVYGTLEEDAQRR 157
Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D + I DY G++D+RN I+ IGD R ED +R+LR RF A
Sbjct: 158 DFTINALYYDPVSERILDYANGVHDIRNNLIRLIGDPVQRYQEDPVRMLRAVRFAAKLNF 217
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ + L+ + S R++ E+ KL + + + + +F +F
Sbjct: 218 -GIEKHTAAPIRELAPMLREIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFP 273
>gi|78485869|ref|YP_391794.1| poly(A) polymerase [Thiomicrospira crunogena XCL-2]
gi|78364155|gb|ABB42120.1| poly(A) polymerase [Thiomicrospira crunogena XCL-2]
Length = 484
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 72/355 (20%), Positives = 139/355 (39%), Gaps = 31/355 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + +++L L + + +VGG VRD L+ L +D D+ T P+++ +F +
Sbjct: 45 DKEALDVLYGLKRAGYDAYLVGGGVRDILLGLEPKDFDVVTNAEPEQIKGVFKS---RCR 101
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-------------------LITDGRYAKVVFTRD 112
+ + + ++ T R D + GR +
Sbjct: 102 LIGRRFRLAHVYFGRNVVEVATFRGDGDGQKSAGRSRKQVNHTRAVDDTGRLVRDNVYGS 161
Query: 113 WKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171
+ D RRDFTIN+LY + + V+DY GG+ D+ ++ IGD R ED +R++R
Sbjct: 162 IEEDVWRRDFTINSLYYNIRDFSVLDYTGGMEDIEKGQLRLIGDPEMRYREDPVRMIRAI 221
Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231
RF A G I+ + + LK +S R++ E+ KL + + + + G+F
Sbjct: 222 RFAAKLGF-EIEPNTKAPIYELAHLLKDVSHARMFEEVLKLFHSGVAIEVFEKLRHFGLF 280
Query: 232 KEIFLDVQEI---SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+F + + +++ E + R +M + L
Sbjct: 281 TFLFPQTHHLLSMESEGFPRMLVIEALKSTDA----RIQSNKGVNPSFLFAAMLWEPMLQ 336
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
R ++ F + + ++++ K A++K +L + L Q
Sbjct: 337 RMEQHLAEDFSRQDAMFAAANDVIEQQIYSTSIPKRFTAQIKDIWSLQFRLLNRQ 391
>gi|289628855|ref|ZP_06461809.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289651028|ref|ZP_06482371.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. 2250]
gi|330867395|gb|EGH02104.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330890665|gb|EGH23326.1| poly(A) polymerase [Pseudomonas syringae pv. mori str. 301020]
Length = 467
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R
Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ D GR + + D+ RR
Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF 218
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + S R++ E+ KL + + + + +F+ +F
Sbjct: 219 -GIEKHSAQPIRSLAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274
>gi|126657310|ref|ZP_01728469.1| polyA polymerase [Cyanothece sp. CCY0110]
gi|126621297|gb|EAZ92009.1| polyA polymerase [Cyanothece sp. CCY0110]
Length = 905
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 84/446 (18%), Positives = 152/446 (34%), Gaps = 58/446 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLM---NLSV--QDIDIATTIL--------PDRV 59
L I IVGGAVRD L+ N V QDID+ +
Sbjct: 472 KLLEEIAQEAEHKGWHLYIVGGAVRDLLLTQNNEKVLLQDIDLVVDGFHRSADVGAGVEL 531
Query: 60 MR-IFSKTRYKVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRD 112
I K + + T ++ K + DI T R++ V
Sbjct: 532 ASSIQKKYSNCRLSVHGEFQTAALLWHKDPEFGSLWLDIATSRTEFYPYPAANPEVEASS 591
Query: 113 WKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168
+ D RRDFTINAL ++G+++D+ GG+ DL+ + ++ + + +ED RI
Sbjct: 592 IRQDLYRRDFTINALAVRLTPPREGELLDFFGGILDLKAKEVRVLHA--NSFIEDPTRIY 649
Query: 169 RFFRFFAHYGEK---------------NIDSDGLVASIKAKKGLKILSSERIW----SEI 209
R RF + I + + A L +E + +
Sbjct: 650 RAVRFAVRLNFEIEPQTEAYIRYAIESGIYEKLRLKNHVAPALTTRLKAELKYILEANYW 709
Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS-LLRFIV 268
L+ + L+A+ ++ E + L + + W I +L +
Sbjct: 710 KPALQLLSDLDALKCLHYQVTLDEEIWWQIRCASRWLKYLDPDNNIGHWLIRLEILISQI 769
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ + ++ K S+ R ++ + E K Y + K
Sbjct: 770 NFKERKQLALNLQLPKESIERIKIVNILHSELQKNLINCQKVSEKYKQLYRH-------K 822
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
L + + N+ + W K PL G+D+ + G PG K +L
Sbjct: 823 LPDLILVAVNSSKKIRRIIW----QYLTQWSKVETPLNGNDLKRMGYKPGPKYKVVLDKL 878
Query: 389 KQEWINSSFQLSQEDLHHLLRKLIAS 414
++ Q S+E+ ++ +++
Sbjct: 879 LSLTLDGEIQ-SKEEAEMIVEEMMKQ 903
>gi|300715373|ref|YP_003740176.1| poly(A)polymerase [Erwinia billingiae Eb661]
gi|299061209|emb|CAX58317.1| Poly(A)polymerase [Erwinia billingiae Eb661]
Length = 480
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 71/396 (17%), Positives = 134/396 (33%), Gaps = 50/396 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R
Sbjct: 53 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQMRKLFRNCRL--- 109
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------------TDGRYAKVVFTRDWKADS 117
+ ++ + ++ T R +G + + D+
Sbjct: 110 -VGRRFRLAHVMFGPEIIEVATFRGHHEAEQVAEDRNTSQRGQNGMLLRDNIFGTIEDDA 168
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRD TIN+LY V DYVGGLNDL+ ++ IGD R ED +R+LR RF A
Sbjct: 169 QRRDLTINSLYYSVSDFSVRDYVGGLNDLQQGIVRLIGDPETRYREDPVRMLRVVRFAAK 228
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
++ ++ + L + R++ E KLL+A + + + +F+ +F
Sbjct: 229 LDM-SVAAETAEPIPRLATLLHDIPPARLFEETLKLLQAGYGYSTYLQLREYQLFQPLFP 287
Query: 237 DV------------QEISLDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDKKS------ 277
+ + + + L L + +
Sbjct: 288 TITRYFTEKGDSNMERMIVQVLKNTDHRIHNQMRVNPAFLFSAMFWYPQLEAAQKIAQES 347
Query: 278 -----------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ + + I + + + + K + +
Sbjct: 348 GLAYYDAFALAMNDVLDEACRSLAIPKRITTLVRDIWQLQLRLSRRHGKRAWKLMEHPKF 407
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
LAL +Q+ + +D P
Sbjct: 408 RAAYDLLALRAEVENNQELLKLTAWWNDFQVSAPPQ 443
>gi|328474187|gb|EGF44992.1| poly(A) polymerase [Vibrio parahaemolyticus 10329]
Length = 455
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 65/354 (18%), Positives = 130/354 (36%), Gaps = 19/354 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R
Sbjct: 37 SDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRNCRL--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK-----------ADSLRR 120
+ I+ + ++ T R +++ D+ RR
Sbjct: 94 -IGRRFRLAHIMFGRDIIEVATFRGHHQEQKNKNISQQSKEGMLLRDNVYGTIDEDAERR 152
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTIN++Y + + DY G+ DL +R I+ IGD R ED +R+LR RF
Sbjct: 153 DFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVRFAVKLDF 212
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+I+ D + L+ + S R++ E KLL++ + L + +F+++F +
Sbjct: 213 -DIEEDTAAPIEEMAPLLREIPSARLFEESLKLLQSGHGLETYHLLREYNLFQQLFPAIS 271
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS--LPREIRYFLIS 297
E + S E + + + + +
Sbjct: 272 EHFTEDYSSHTEQMLDLVLDSTDMRIEDGKRINPAFMFAAMLWYPLCALADKLMDQHNLC 331
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
++ + + + + + + L L + ++++
Sbjct: 332 HYDAIMEASNIILDDQVRTIAIPRRHTATIREIWQLQLRLPRRNGKRAFRLMEL 385
>gi|237802072|ref|ZP_04590533.1| poly(A) polymerase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331024928|gb|EGI04984.1| poly(A) polymerase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 467
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R
Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ D GR + + D+ RR
Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D +V+DY G++D+RN+ I+ IGD R ED +R+LR RF A
Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNKLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF 218
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + S R++ E+ KL + + + +F +F
Sbjct: 219 -GIEKHSAQPISALAPMLRDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFDPLFP 274
>gi|71733402|ref|YP_273137.1| poly(A) polymerase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71553955|gb|AAZ33166.1| poly(A) polymerase [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 491
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R
Sbjct: 67 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 122
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ D GR + + D+ RR
Sbjct: 123 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 182
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 183 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF 242
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + S R++ E+ KL + + + + +F+ +F
Sbjct: 243 -GIEKHSAQPIRSLAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 298
>gi|289674926|ref|ZP_06495816.1| poly(A) polymerase [Pseudomonas syringae pv. syringae FF5]
Length = 408
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R
Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ D GR + + D+ RR
Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF 218
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + S R++ E+ KL + + + + +F+ +F
Sbjct: 219 -GIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274
>gi|161511462|ref|NP_991684.2| poly(A) polymerase I [Yersinia pestis biovar Microtus str. 91001]
Length = 491
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 70/369 (18%), Positives = 136/369 (36%), Gaps = 29/369 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R
Sbjct: 68 SDNPLKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL--- 124
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116
+ ++ + ++ T R G + + D
Sbjct: 125 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDD 183
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A
Sbjct: 184 AQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAA 243
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+I + + L+ + R++ E KLL++ + + +F+ +F
Sbjct: 244 KLDM-SISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 302
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + ++++ + D + L + ++ A+K +
Sbjct: 303 PLIARNFTEQHDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 362
Query: 289 REIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ Y+ N + I K + + +L++ +
Sbjct: 363 SGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPK 422
Query: 348 ILQVLSDII 356
++
Sbjct: 423 FRAAYDLLL 431
>gi|116327797|ref|YP_797517.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116331544|ref|YP_801262.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116120541|gb|ABJ78584.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116125233|gb|ABJ76504.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 489
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 75/289 (25%), Positives = 123/289 (42%), Gaps = 17/289 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D D + I+ LNK K+ IVGG VRD L+ +D D+ T P+++ +IF+ R
Sbjct: 38 MIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNNCRI- 96
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR---------DWKADSLRR 120
+ + I+ R K +++T RS A + D+ RR
Sbjct: 97 ---IGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAARR 153
Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTIN+LY D + +IDYVGG D+RN+ ++ IGD ED +R+LR +F G
Sbjct: 154 DFTINSLYYDVRNDSIIDYVGGFEDIRNKILRVIGDPDISFREDPVRMLRAVKFAEILG- 212
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+++ A K K L+ SS R+ E NK+ M G+ + +F +
Sbjct: 213 LDVEKTTSKAIRKHKAELEKASSSRMLEEYNKIFRTWKTSLIFQGMAEHGLLEVLFKE-- 270
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
++ ++ E I L + + ++ +
Sbjct: 271 AFDKERKKNSSFGDKFLETNIGKRLAIADKLLTEREEMTPHIFYSLIFS 319
>gi|302185887|ref|ZP_07262560.1| poly(A) polymerase [Pseudomonas syringae pv. syringae 642]
gi|330941558|gb|EGH44344.1| poly(A) polymerase [Pseudomonas syringae pv. pisi str. 1704B]
gi|330954360|gb|EGH54620.1| poly(A) polymerase [Pseudomonas syringae Cit 7]
gi|330977389|gb|EGH77338.1| poly(A) polymerase [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 467
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R
Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ D GR + + D+ RR
Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF 218
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + S R++ E+ KL + + + + +F+ +F
Sbjct: 219 -GIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274
>gi|28868183|ref|NP_790802.1| poly(A) polymerase [Pseudomonas syringae pv. tomato str. DC3000]
gi|301384667|ref|ZP_07233085.1| poly(A) polymerase [Pseudomonas syringae pv. tomato Max13]
gi|302061944|ref|ZP_07253485.1| poly(A) polymerase [Pseudomonas syringae pv. tomato K40]
gi|302134196|ref|ZP_07260186.1| poly(A) polymerase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|28851420|gb|AAO54497.1| poly(A) polymerase [Pseudomonas syringae pv. tomato str. DC3000]
gi|330872464|gb|EGH06613.1| poly(A) polymerase [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
gi|330967200|gb|EGH67460.1| poly(A) polymerase [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 467
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R
Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ D GR + + D+ RR
Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF 218
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + S R++ E+ KL + + + +F+ +F
Sbjct: 219 -GIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFP 274
>gi|254282332|ref|ZP_04957300.1| poly(A) polymerase [gamma proteobacterium NOR51-B]
gi|219678535|gb|EED34884.1| poly(A) polymerase [gamma proteobacterium NOR51-B]
Length = 432
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 61/250 (24%), Positives = 108/250 (43%), Gaps = 27/250 (10%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ ++S L ++ IVGGAVRD L+ +D D+ T P+++ +F R
Sbjct: 15 LVSEAAVKVVSRLKSKGYEAYIVGGAVRDLLLGGQPKDFDVGTNATPEQIKAVFKNARI- 73
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD----------------- 112
+ + + + ++TT R + A + +
Sbjct: 74 ---IGRRFQIVHVRFGPEIIEVTTYRGHHASGSAPASGKDSGNTKAHSRQSDKGLLLRDN 130
Query: 113 ----WKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167
+ D+ RRD TINALY D + + V+D + G+ D+ R ++ IG+ H R ED +R+
Sbjct: 131 VYGTLEEDAARRDLTINALYYDPEDESVLDQLNGMADVEARLVRVIGEPHTRYREDPVRM 190
Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227
LR RF A + +++S+ A + L + S R++ E KL A +Y
Sbjct: 191 LRVLRFAAKL-QFDVESETDHAIAECAPLLAEIPSARLFDEFLKLFMAGYATPTFKLLYR 249
Query: 228 GGIFKEIFLD 237
G+ +F +
Sbjct: 250 YGLLHHLFPE 259
>gi|331019095|gb|EGH99151.1| poly(A) polymerase [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 467
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R
Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ D GR + + D+ RR
Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF 218
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + S R++ E+ KL + + + +F+ +F
Sbjct: 219 -GIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFP 274
>gi|298485543|ref|ZP_07003625.1| Poly(A) polymerase [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|298159943|gb|EFI00982.1| Poly(A) polymerase [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|320326088|gb|EFW82145.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. B076]
Length = 467
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R
Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ D GR + + D+ RR
Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF 218
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + S R++ E+ KL + + + + +F+ +F
Sbjct: 219 -GIEKHSAQPIRSLAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274
>gi|66044085|ref|YP_233926.1| Poly(A) polymerase [Pseudomonas syringae pv. syringae B728a]
gi|63254792|gb|AAY35888.1| Poly(A) polymerase [Pseudomonas syringae pv. syringae B728a]
Length = 491
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R
Sbjct: 67 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 122
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ D GR + + D+ RR
Sbjct: 123 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 182
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 183 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF 242
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + S R++ E+ KL + + + + +F+ +F
Sbjct: 243 -GIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 298
>gi|311104114|ref|YP_003976967.1| poly(A) polymerase [Achromobacter xylosoxidans A8]
gi|310758803|gb|ADP14252.1| poly(A) polymerase [Achromobacter xylosoxidans A8]
Length = 454
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 12/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I + +L + + IVGGAVRD ++ L +D D+AT P+++ +F + R
Sbjct: 37 SRHAIKVCEVLRQHGYDAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + ++ ++ + +T R + GR + + D+ RRDFT+N
Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASEDQETDEHGRILRDNVFGSHEEDAARRDFTMN 152
Query: 126 ALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY +VID+ G+ DL+ R ++ IGD R ED +R+LR RF A ID
Sbjct: 153 ALYYDPHNEEVIDFHNGVADLKKRQVRIIGDPAKRYREDPVRMLRAVRFAAKLN-GTIDP 211
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ + + + R++ E+ KLL + ++ + + G+ K + +
Sbjct: 212 ATRQPISTMAELIDNVPASRLFDEMLKLLTCGHAMDCLRQLRADGLHKGLLPLLD 266
>gi|56479470|ref|YP_161059.1| RNA-poly(A) polymerase [Aromatoleum aromaticum EbN1]
gi|56315513|emb|CAI10158.1| RNA-poly(A) polymerase [Aromatoleum aromaticum EbN1]
Length = 452
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 123/280 (43%), Gaps = 17/280 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ ++L + K+ +VGGAVRD L+ +D D+AT+ P+ V +F ++R
Sbjct: 38 SPVARKVCTVLQEHGHKAFVVGGAVRDLLVGHPPKDYDVATSATPEEVRALFRRSRI--- 94
Query: 72 PTSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ + ++ + +++T R ++ GR + D+ RRDFT+
Sbjct: 95 -IGRRFKIVHVMSGPETIEVSTFRASQVAESTETDEHGRVLRDNVFGSQAEDATRRDFTV 153
Query: 125 NALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
NALY D + I DY G+ DL+ +T++ IGD R ED +R+LR R A G +D
Sbjct: 154 NALYYDPTTEQIVDYHHGVADLKQKTLRIIGDPRARYREDPVRMLRGVRLGAKLG-LTLD 212
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----VQ 239
+ L+ + + R++ E+ KLL + L + + G+ + ++
Sbjct: 213 PAARHPIREMASLLENVPAARLFDEMLKLLFSGYALKCLEQLREEGLHHGLLPLLDVILE 272
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279
+ ++ ++ + D + L + +L
Sbjct: 273 QPMGERFVRLALENTDERVRQDKSVSPGFLFATLLWHEVL 312
>gi|332283312|ref|YP_004415223.1| poly(A) polymerase [Pusillimonas sp. T7-7]
gi|330427265|gb|AEC18599.1| poly(A) polymerase [Pusillimonas sp. T7-7]
Length = 453
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 12/237 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I + +L + IVGGAVRD ++ L +D D+AT P+++ +F + R
Sbjct: 37 SRHAIKVCEVLRAEGYDAYIVGGAVRDLIVGLEPKDFDVATNATPNQIRPLFRRARI--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + ++ ++ + +T R GR + + D+ RRDFT+N
Sbjct: 94 -IGKRFQLVHVVFGQEIIETSTFRATATSDEHTDEHGRILRDNLFGSQQEDAARRDFTLN 152
Query: 126 ALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY +VIDY G+ DL+NR ++ IGD R ED +R+LR RF A ID
Sbjct: 153 ALYYDPINEEVIDYHRGVPDLKNRVVRMIGDPEKRYREDPVRMLRALRFAAKLN-GTIDP 211
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
++ + S R++ E KLL + ++ + + G+ K + + +
Sbjct: 212 ATQAPIAPLSGLIEHVPSSRLFDETLKLLTCGHAMDCLRQLQTMGLHKGLLPLIDAV 268
>gi|332968759|gb|EGK07809.1| poly(A) polymerase I [Psychrobacter sp. 1501(2011)]
Length = 697
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 68/352 (19%), Positives = 133/352 (37%), Gaps = 17/352 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+I +++ L+K + IVGG VRD+L+ L+ +D D T P V +F K +
Sbjct: 20 IIEVIATLSKAGFDAYIVGGGVRDTLLGLNPKDFDAVTDARPHEVKDLFGK---RCRIIG 76
Query: 75 ISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + + ++ T R + +DG + D D RRDF+INA+Y
Sbjct: 77 RRFQLAHVYSGRDMIEVATFRAPPSGDAHTTSDGMIVRDNVWGDIHQDFARRDFSINAMY 136
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ +G V D+ L+D++N+T++ +G A RI ED +R+LR RF A G +
Sbjct: 137 YEPLKGVVYDFCDALDDIKNKTLRLLGHAPLRIEEDPVRLLRALRFKAKLGFEFDADLSE 196
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE---IFLDVQEISLD 244
L +S R++ E K+ + + ++ G + + ++
Sbjct: 197 QFHDDNWALLDQVSPHRLYDESQKMFTGGYLVPLLPLLFEYGAIRHLIIYPPEQPSRLVN 256
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
Q++ + I+ + L+ ++ L KF +
Sbjct: 257 QVAINTDKRIALGKSINPAFFYAALL----WENYLHQLAKFKKKNMPFHDAQLQAASKVI 312
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ I + + + I + K+ + ++
Sbjct: 313 DRQRIKTAIPRFAEQFIRDIWILQPKLANPRVKQIAQLAEHPRFRAAFDFLL 364
>gi|259907516|ref|YP_002647872.1| poly(A) polymerase I [Erwinia pyrifoliae Ep1/96]
gi|224963138|emb|CAX54622.1| Poly(A) polymerase [Erwinia pyrifoliae Ep1/96]
Length = 459
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 58/298 (19%), Positives = 108/298 (36%), Gaps = 20/298 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R
Sbjct: 28 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGTKPKDFDVTTNATPDQMRKLFRNCRL--- 84
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL---------------ITDGRYAKVVFTRDWKAD 116
+ ++ + ++ T R +G + + D
Sbjct: 85 -VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQVVEDRNSSQRDQNGMLLRDNIFGSIEDD 143
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRD TIN+LY + V DYVGGL+DL+ I+ IGD R ED +R+LR RF A
Sbjct: 144 AQRRDLTINSLYYNVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFAA 203
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
A I + + L + +
Sbjct: 204 KLDMSIAAETAEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLEYQLFQPLFP 263
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
+ + + S + + D+ + + ++ + + + + ++I
Sbjct: 264 IITRCFTEQGDSNMERMILLVLKNTDTRIHNQMRVNPAFLFAAMFWYPQLEMAQKIAQ 321
>gi|213970146|ref|ZP_03398277.1| Poly(A) polymerase [Pseudomonas syringae pv. tomato T1]
gi|213925027|gb|EEB58591.1| Poly(A) polymerase [Pseudomonas syringae pv. tomato T1]
Length = 491
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R
Sbjct: 67 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 122
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ D GR + + D+ RR
Sbjct: 123 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 182
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 183 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF 242
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + S R++ E+ KL + + + +F+ +F
Sbjct: 243 -GIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFP 298
>gi|330960809|gb|EGH61069.1| poly(A) polymerase [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 467
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R
Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ D GR + + D+ RR
Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF 218
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + S R++ E+ KL + + + +F+ +F
Sbjct: 219 -GIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFP 274
>gi|257484045|ref|ZP_05638086.1| poly(A) polymerase [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|330987743|gb|EGH85846.1| poly(A) polymerase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331013061|gb|EGH93117.1| poly(A) polymerase [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 467
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 20/237 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R
Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120
+ + I ++ ++ T R++ D GR + + D+ RR
Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A
Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF 218
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ L+ + S R++ E+ KL + + + + +F+ +F
Sbjct: 219 -GIEKHSAQPIRSLAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274
>gi|304396621|ref|ZP_07378502.1| poly(A) polymerase [Pantoea sp. aB]
gi|304356130|gb|EFM20496.1| poly(A) polymerase [Pantoea sp. aB]
Length = 443
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 60/355 (16%), Positives = 120/355 (33%), Gaps = 20/355 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T P+++ ++F R
Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTNATPEQMRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------------TDGRYAKVVFTRDWKADS 117
+ ++ + ++ T R G + + D+
Sbjct: 74 -VGRRFRLAHVMFGPEVIEVATFRGHHQVEEIAEDRNSSQRAQSGMLLRDNIFGSIEDDA 132
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRD TIN+LY V DYVGG++DL I+ IGD R ED +R+LR RF A
Sbjct: 133 QRRDLTINSLYYSVADFSVRDYVGGISDLEQGIIRLIGDPETRYREDPVRMLRVARFAAK 192
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ A I + + L +
Sbjct: 193 LNMRIAPETAEPIPRLASLLRDIPPARLFEESLKLLQAGYGYSTYLKLCEYQLFQPLFPT 252
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS-LPREIRYFL 295
+ + + S + D+ + + ++ + + + R +
Sbjct: 253 LARNFTENSDSHMERMLAQVLKNTDNRIHNDMRVNPAFLFAAMFWYPQLEAAERIAQESG 312
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
+++F ++ E + + + + L L + + +++
Sbjct: 313 LTYFEAFAMAMNDTLDEACRALAIPKRITSLIRDIWLLQLRMSRRHGKRAWKLME 367
>gi|89074127|ref|ZP_01160626.1| putative polyA polymerase [Photobacterium sp. SKA34]
gi|89050063|gb|EAR55589.1| putative polyA polymerase [Photobacterium sp. SKA34]
Length = 447
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 68/396 (17%), Positives = 137/396 (34%), Gaps = 46/396 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK + +VGG VRD L++ +D DIAT P+ + ++F R
Sbjct: 17 SENALKVLYRLNKAGYDAYLVGGGVRDLLLDKQPKDFDIATNATPEDIKKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------------------ITDGRYAKVVF 109
+ I+ + ++ T R +G +
Sbjct: 74 -IGRRFRLAHILFGRDIIEVATFRGHHSDAPVQTTTPKDSKQKPQISSRSQEGMLLRDNV 132
Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168
+ D+ RRDFTINALY + V DY G++DL NR ++ +GD R ED +R+L
Sbjct: 133 YGTIEEDAERRDFTINALYYSVKDFTVTDYANGVHDLNNRIVRLMGDPETRYREDPVRML 192
Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228
R RF ID + + S R++ E KLL++ L +
Sbjct: 193 RAVRFAVKLDM-EIDPATAAPIKDLAPLMLDIPSARLFEESLKLLQSGQGLETYRMLREY 251
Query: 229 GIFKEIFLDVQEI-----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+F+++F + + ++ + + + +++ + ++ +
Sbjct: 252 NLFQQLFPILADHFTEDNSSQTEKMIEHILASTDKRIAEDKRVNPAFIYAAMLWYPMMIR 311
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
++ L + + + + + I + + +L+
Sbjct: 312 AEEVSFASGLSFYDAFMV---ASNDILDDQVRTIAIPRRHTTTVRDIWQQQLRFARRSGK 368
Query: 338 NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373
+ + G D+ +
Sbjct: 369 RAFKTMEHPKFRAAYDFLEMRALFE----GHDIKEL 400
>gi|284050067|ref|ZP_06380277.1| polynucleotide adenylyltransferase region [Arthrospira platensis
str. Paraca]
gi|291566508|dbj|BAI88780.1| polyA polymerase [Arthrospira platensis NIES-39]
Length = 918
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 79/444 (17%), Positives = 146/444 (32%), Gaps = 63/444 (14%)
Query: 12 DSDLINILSLL----NKGEDKSCIVGGAVRDSLMNLSV-----QDIDIATTI-------- 54
+L IL+ + + + +VGG VRD L+ DID+
Sbjct: 467 APELWQILAKIAELSQQRGWQIYLVGGGVRDLLLAEPTDNLLLHDIDLVVDGCYHNSTNN 526
Query: 55 ----------LPDRVMRIFSKTRYKV-IPTSISYGTIKIICRKK------YFDITTLRSD 97
+ R + + + + T ++ + DI T R++
Sbjct: 527 ISDEITTTISPAVDLARSLQEYYPQARLEVHGQFQTAALLWHNHPVLNSLWIDIATARTE 586
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFI 153
V + D RRDFTINAL + G+++D+ GG+ DL R I+ +
Sbjct: 587 FYPYPAANPEVEASSIRQDLYRRDFTINALALRLTEPKSGELLDFFGGVQDLELREIRVL 646
Query: 154 GDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS------ 207
+ +ED RI R RF G G+ ++ S
Sbjct: 647 HP--NSFIEDPTRIYRAVRFAVRLGFNLEHHTKEYVDYAINSGIYDRQRQQRDSAKIPAL 704
Query: 208 ------EINKLLEAKNPLNAIVHMYNGGIFKEIFL--DVQEISLDQLSQVIEAEQVFEWK 259
E+ +L+A A+ + + I ++ ++ Q+ V + F+
Sbjct: 705 EARLKSELKYILQAPYWQPALHLLGELKALRCIHPTLELNQLLWRQIRTVDRCLKRFDPH 764
Query: 260 I---DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+R VLI+ + +A F + L++ N L +
Sbjct: 765 HTLTHWQIRLDVLIAALSPEYRREVADIFQFNSQQVDRLLNLENAQNRVADLLPNCQQPS 824
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376
Y + + I +A H + Q+ + +W L G+D+ K G
Sbjct: 825 DYFRVFEPYDLPMLILIAAHSPRWVRK------QIWRYLNNWWNAKPILNGNDLKKLGYK 878
Query: 377 PGKKVGNILVHCKQEWINSSFQLS 400
PG + +L ++ +
Sbjct: 879 PGPQFQIMLNDLLNATLDGIVSDT 902
>gi|257125451|ref|YP_003163565.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Leptotrichia buccalis C-1013-b]
gi|257049390|gb|ACV38574.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Leptotrichia buccalis C-1013-b]
Length = 588
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 95/425 (22%), Positives = 157/425 (36%), Gaps = 48/425 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D D+ IL LNK +VGGAVRD ++N D D AT I + RIF+ K
Sbjct: 6 DKDVKFILKQLNKNG-TGFLVGGAVRDKILNKDPGDYDFATDIEYSELKRIFADYNPK-- 62
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINALYA 129
+G + I K ++I R + + F + + D RRDFTIN+L
Sbjct: 63 EMGAHFGILMIKVNGKSYEIAKFRKETGVYNSRYPKEIKFVKTIEEDLSRRDFTINSLAY 122
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+++ ++D GG D++ + I+F+G RI ED LRILR FRF + G
Sbjct: 123 NEETGIVDLYGGKQDIKRKVIRFVGKPKLRIEEDALRILRAFRFISKLGFNLDKKTAEAI 182
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
K K +S ERI+ E++K+L A++ M + + I + + +
Sbjct: 183 CNKRKFL-TKISKERIFDELSKILMGNFAKKALIEMKKLRVLEMIIPEFRYAYNFDQNNP 241
Query: 250 IEAEQVFEW--------KIDSLLRFIVLISWQDKKS----------------------IL 279
I + +F D + RF L K +
Sbjct: 242 IHTDDLFNHIIKVIHLCDYDLITRFAALFHDLGKINAKIIDAKGIFHFYGHEKESALIAE 301
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
+ E + + + +S +KKL DK + +F A +
Sbjct: 302 EELRMLKASNETINSVKKIIKNHMLIYEDVSDKTLKKLIIEMEDKNLKRLFNLFYADLNS 361
Query: 339 ---NLTHQDTCFILQVLSDIIHWKKP-------LFPLTGDDVVKYGIPPGKKVGNILVHC 388
++ + I + KK +TG D++ +K+G +
Sbjct: 362 KGIKSKKENEQILKNFWDKIENIKKQGKILQFNDLDITGIDLINLKFDN-RKIGEVKNRL 420
Query: 389 KQEWI 393
+
Sbjct: 421 YDLVL 425
>gi|147117|gb|AAA24303.1| plasmid copy number protein [Escherichia coli]
Length = 410
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 70/387 (18%), Positives = 131/387 (33%), Gaps = 48/387 (12%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
+ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R +
Sbjct: 1 MYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVAKLFRNCRL----VGRRFR 56
Query: 79 TIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLRRDFTINA 126
++ + ++ T R +G + + D+ RRDFTIN+
Sbjct: 57 LAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINS 116
Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G I +
Sbjct: 117 LYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM-RISPE 175
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------- 238
+ L + R++ E KLL+A + +F+ +F +
Sbjct: 176 TAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTEN 235
Query: 239 -----------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK 275
++ L + + E + +
Sbjct: 236 GDSPMERIIEQVLKNTDTRIHNDMRVNPTFLFAAMFWYPLLETAQNIAQESGLTYHDAFA 295
Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335
++ + + I L + + + K + + LAL
Sbjct: 296 LAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLAL 355
Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +++ + P
Sbjct: 356 RAEVERNAELQRLVKWWGEFQVSAPPD 382
>gi|269467943|gb|EEZ79678.1| tRNA nucleotidyltransferase/poly(A) polymerase [uncultured SUP05
cluster bacterium]
Length = 379
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 71/372 (19%), Positives = 151/372 (40%), Gaps = 26/372 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D + + ++ ++K + +VGG VRD L+ L +D D+AT P++V ++F ++R
Sbjct: 14 LLDKNAVKVIDTIHKAGFEVYLVGGCVRDLLLGLRPKDFDVATNAKPEQVHKLFKRSRL- 72
Query: 70 VIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTIN 125
+ + ++ + + ++ T RS + + +V + + D +RRDF IN
Sbjct: 73 ---IGRRFRLVHVMFSARNFIEVATFRSGKVQTAKSGVIVRDNCYGNIEDDVIRRDFNIN 129
Query: 126 ALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY D + VIDYVGGL D+ N+ I IG+ R +D +R++R RF + +
Sbjct: 130 ALYYDIKKHQVIDYVGGLIDISNKEIHMIGEPTLRFEQDPVRMIRAVRFQSKLS-AKLSP 188
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ + + L +S R++ E KL + + G+ + +F + S
Sbjct: 189 EIHASILNQAHLLSHVSPARLYEECIKLFHNEYAFEVFESLEKYGLLQCLFKQTHKNSFI 248
Query: 245 Q---LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL-----------PRE 290
+ L+ +Q L + + ++ ++ +K +
Sbjct: 249 KKALLNTSARIKQNKPVTPAFLFAVFLWQAQNERFIVIKKKQKSFYLAMAKASEEVIITQ 308
Query: 291 IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
I+ + + + + + + + ++ + +A + L + +
Sbjct: 309 IQQVSLPKWLTARIKDIWMMQSKLEKMHPKKVQELLDNPRFRMAYDFLLLRSKSINP--E 366
Query: 351 VLSDIIHWKKPL 362
+L W K
Sbjct: 367 LLETAKFWTKVQ 378
>gi|308185719|ref|YP_003929850.1| poly(A) polymerase [Pantoea vagans C9-1]
gi|308056229|gb|ADO08401.1| poly(A) polymerase [Pantoea vagans C9-1]
Length = 479
Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 60/355 (16%), Positives = 119/355 (33%), Gaps = 20/355 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T P+++ ++F R
Sbjct: 53 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTNATPEQMRKLFRNCRL--- 109
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------------TDGRYAKVVFTRDWKADS 117
+ ++ + ++ T R G + + D+
Sbjct: 110 -VGRRFRLAHVMFGPEVIEVATFRGHHQVEEIAEDRNSSQRAQSGMLLRDNIFGSIEDDA 168
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRD TIN+LY V DYVGG++DL I+ IGD R ED +R+LR RF A
Sbjct: 169 QRRDLTINSLYYSVADFSVRDYVGGISDLEQGIIRLIGDPETRYREDPVRMLRVARFAAK 228
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
A I + + L +
Sbjct: 229 LNMSIAPETAEPIPRLASLLRDIPPARLFEESLKLLQAGYGYSTYLKLCEYQLFQPLFPT 288
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS-LPREIRYFL 295
+ + + S + D+ + + ++ + + + R +
Sbjct: 289 LARNFTENSDSHMERMLAQVLKNTDNRIHNDMRVNPAFLFAAMFWYPQLEAAERIAQESG 348
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
+++F ++ E + + + + L L + + +++
Sbjct: 349 LTYFEAFAMAMNDTLDEACRALAIPKRITSLIRDIWLLQLRMSRRHGKRAWKLME 403
>gi|149190136|ref|ZP_01868412.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio shilonii
AK1]
gi|148836025|gb|EDL52986.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio shilonii
AK1]
Length = 449
Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 69/352 (19%), Positives = 136/352 (38%), Gaps = 17/352 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R
Sbjct: 35 SENALKVLYRLNGAGYDAYLVGGGVRDLLLGEQPKDFDIATNATPEQIKKLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R G + D+ RRD
Sbjct: 92 -IGRRFRLAHIMFGRDIIEVATFRGHHQEQEKNVSQQSKEGMLLRDNVYGSIDEDAERRD 150
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
F+INA+Y + + DY GG+ DL +R I+ IG+ R ED +R+LR RF A
Sbjct: 151 FSINAMYYNIGDYSIHDYAGGMEDLEDRLIRLIGEPEVRYREDPVRMLRAIRFAAKLDF- 209
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+ D + L+ + S R++ E KLL++ L + +F+++F +
Sbjct: 210 DIEEDTAAPIEELAPLLRDIPSARLYEESLKLLQSGYGLETYHLLREYNLFQQLFPIIAP 269
Query: 241 ISLDQL-SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
++ S+ + + D + ++ + + + +S +
Sbjct: 270 HFTEEYSSRTEQVLDLVLDATDERIEEGKRVNPAFMFAAMLWYPMMEYATRLMSKGMSEY 329
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ + E K + + L L + + ++++
Sbjct: 330 DAIMEASNNILDEQVKSTAIPRRHTATIREIWQLQLRLPRRSGKRAYRLMEL 381
>gi|290968749|ref|ZP_06560287.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Megasphaera genomosp. type_1 str. 28L]
gi|290781402|gb|EFD93992.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Megasphaera genomosp. type_1 str. 28L]
Length = 446
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 67/438 (15%), Positives = 136/438 (31%), Gaps = 42/438 (9%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVIPT 73
+ L L + ++ +VGGAVRD L++ D DI T P+ + ++ + +
Sbjct: 5 VRKWLQALRQEGYEAYLVGGAVRDMLLHRKPHDYDIVTQARPEEIKQVAQRHGWSCTMQP 64
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRY--AKVVFTRDWKADSLRRDFTINALYADQ 131
+G + + + T R ++ + + + + + D LRRDFTINAL
Sbjct: 65 GEVFGIVTVRVEGLSLETATYRKEVYGKDSHRPSDIWYATTLQEDMLRRDFTINALAMTA 124
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+G+++DYVGG DL+ + + +G+ R ED LR+ R R G S
Sbjct: 125 EGRILDYVGGQRDLKEKRLATVGEPVRRFREDGLRLFRACRLVGQLGFTPEASLVQAMPQ 184
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVH--------------------------- 224
+ I + ++LL +
Sbjct: 185 ALFRVAGISLQRAVQE-GDRLLLTPYAAEGLQLWKQTGLAAAACRSRKNGVEVAVPIFPE 243
Query: 225 MYNGGIFKEIFLDVQEISL------DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI 278
+ + + IS + + + + F +
Sbjct: 244 LVYWVSPDDWQRTLAYISHLPGDLTLRYAALFHPFCGTSLPPSAGNVFTADSWADIPTQV 303
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
L K + +L+ + +++S ++ + + + + + L
Sbjct: 304 LRRWGKAAKEVRRILWLVQQSQTVLSLQSISEEACRRWWCREIRQGVFKRKEQLLQAVQQ 363
Query: 339 NLTHQDTCFILQVLSDIIHWKKP--LFPLTGDDVV---KYGIPPGKKVGNILVHCKQEWI 393
Q L P+ D++ GK G L + ++
Sbjct: 364 MCAMVRVMAAAQHLPFYERRVAVATRLPVETKDLLYSSALVQYCGKDTGACLQYLLRQVQ 423
Query: 394 NSSFQLSQEDLHHLLRKL 411
+ L +
Sbjct: 424 EGRLHNTASVLEQAAEQW 441
>gi|85058468|ref|YP_454170.1| poly(A) polymerase I [Sodalis glossinidius str. 'morsitans']
gi|84778988|dbj|BAE73765.1| poly(A) polymerase I [Sodalis glossinidius str. 'morsitans']
Length = 470
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 74/368 (20%), Positives = 134/368 (36%), Gaps = 29/368 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK + +VGG VRD L+ +D DI T+ P+++ ++F R
Sbjct: 51 SENALKVLYRLNKAGYVAYLVGGGVRDLLLGKKPKDFDITTSATPEQMRKLFRNCRL--- 107
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVFTRDWKAD 116
+ ++ + ++ T R +G + + D
Sbjct: 108 -VGRRFRLAHVMFGPEIIEVATFRGHHQVLEPEEGATGAALTGQNGMLLRDNIFGSIEED 166
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDF++N+LY + DY GGL DL+ TI+ IGD R ED +R+LR RF A
Sbjct: 167 AQRRDFSVNSLYYSVADFTLRDYTGGLKDLQEGTIRLIGDPETRYREDPVRMLRAVRFAA 226
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
I + + L + R++ E KLL+A + +F+ +F
Sbjct: 227 KLDM-TISRETAEPIPRLAALLHDIPPARLFEEALKLLQAGYGEATYHLLCEYQLFQPLF 285
Query: 236 L-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + ++Q+ + A + D + L + +L A+K +
Sbjct: 286 PLISRNFTEHGDSYMEQMVIRVLANTDQRLRSDMRVNPAFLFAAMLWYPLLEHAQKLTQE 345
Query: 289 REIRYFLISFFNCN-FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ YF N K I K + +L++ +
Sbjct: 346 SGLSYFDAFSLAMNDILDKQCRTLAIPKRLTALMRDMWQLQLRLSRRQGKRAHKLMEHPK 405
Query: 348 ILQVLSDI 355
+
Sbjct: 406 FRASYDLL 413
>gi|149927694|ref|ZP_01915946.1| probable polynucleotide adenylyltransferase protein [Limnobacter
sp. MED105]
gi|149823520|gb|EDM82750.1| probable polynucleotide adenylyltransferase protein [Limnobacter
sp. MED105]
Length = 485
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 12/239 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L K+ +VGGAVRD L+ + +D D+AT P++ R+F + R
Sbjct: 58 LVSHNAIRVCETLQSKGYKAFVVGGAVRDLLLGMRPKDFDVATDASPEQTQRLFRRARV- 116
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFT 123
+ + ++ + + +T R ++ GR + D+ RRDFT
Sbjct: 117 ---IGRRFQIVHVMFGPETIETSTFRALASASNEKDEHGRVLRDNEFGRQDEDASRRDFT 173
Query: 124 INALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NA+Y D + DY G+ DLR+R ++ IG+ R ED +R+LR RF A I
Sbjct: 174 VNAMYYDPSTETVWDYHHGMEDLRSRVLRMIGEPSLRYREDPVRMLRVVRFAAKLNF-EI 232
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ + L+ + + R++ E+ KLL + + + + + G+ +F + I
Sbjct: 233 EPATYAPIAELSDLLRNVPASRLFDEMLKLLMSGSAMACLKGLRKAGLHHGVFPLLDAI 291
>gi|269961935|ref|ZP_06176290.1| Poly(A) polymerase [Vibrio harveyi 1DA3]
gi|269833258|gb|EEZ87362.1| Poly(A) polymerase [Vibrio harveyi 1DA3]
Length = 455
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 63/354 (17%), Positives = 134/354 (37%), Gaps = 19/354 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R
Sbjct: 37 SDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRNCRL--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK-----------ADSLRR 120
+ I+ + ++ T R +++ D+ RR
Sbjct: 94 -IGRRFRLAHIMFGRDIIEVATFRGHHQEQKNKNVSQQSKEGMLLRDNVYGTIDEDAERR 152
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTIN++Y + + DY G+ DL +R ++ IGD R ED +R+LR RF
Sbjct: 153 DFTINSMYYNIADYSIHDYARGIEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLDF 212
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+I+ D + L+ + S R++ E K+L++ + L + +F+++F +
Sbjct: 213 -DIEEDTAAPIEEMAPLLRDIPSARLFEESLKMLQSGHGLETYHLLREYNLFQQLFPVIA 271
Query: 240 EISLDQL--SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
E + + V + + + ++L + + +
Sbjct: 272 EHFTEDYESHTEQMLDLVLDSTDMRIEEGKRINPAFMFAAMLWYPLCAMADKLMEQRNLC 331
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
++ + + + + + + L L + ++++
Sbjct: 332 HYDAIMEASNIILDDQVRTIAIPRRHTATIREIWQLQLRLPRRNGKRAFRLMEL 385
>gi|206578248|ref|YP_002240384.1| poly(A) polymerase [Klebsiella pneumoniae 342]
gi|288937089|ref|YP_003441148.1| poly(A) polymerase [Klebsiella variicola At-22]
gi|290512511|ref|ZP_06551877.1| poly(A) polymerase [Klebsiella sp. 1_1_55]
gi|206567306|gb|ACI09082.1| poly(A) polymerase [Klebsiella pneumoniae 342]
gi|288891798|gb|ADC60116.1| poly(A) polymerase [Klebsiella variicola At-22]
gi|289774852|gb|EFD82854.1| poly(A) polymerase [Klebsiella sp. 1_1_55]
Length = 453
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 72/366 (19%), Positives = 133/366 (36%), Gaps = 26/366 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + ++ LNK +S +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 34 SENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R G + + D+ R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGHTTDRVTSQQGQNGMLLRDNIFGSIEEDAQR 149
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A
Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVRMLRAVRFAAKLD 209
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + + L + R++ E+ KLL+A + + +F+ +F +
Sbjct: 210 M-RISPETAEPLPRLATLLHDVPPARLFEEVLKLLQAGYGYQTYMLLREYNLFQPLFPTI 268
Query: 239 Q-------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291
+ ++++ + D + L + +L A+K + +
Sbjct: 269 TRYFTERGDSPMERIISQVLKNTDNRIHNDMRVNPAFLFAVMFWYPLLETAQKIAQESGL 328
Query: 292 RYFLISFFNCNFNQKT-LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
Y+ N I K + +L++ +
Sbjct: 329 AYYDAFALAMNDVLDEACRTLAIPKRITTLIRDIWQLQLRMSRRQGKRAWKLMEHPKFRA 388
Query: 351 VLSDII 356
+
Sbjct: 389 AYDLLE 394
>gi|118580041|ref|YP_901291.1| poly(A) polymerase [Pelobacter propionicus DSM 2379]
gi|118502751|gb|ABK99233.1| poly(A) polymerase [Pelobacter propionicus DSM 2379]
Length = 455
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 81/395 (20%), Positives = 138/395 (34%), Gaps = 53/395 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + L L +VGG VRD L+ +D D+ T P++V RIF R
Sbjct: 22 LVSPNALRTLYRLKDNGFIGYLVGGCVRDLLLGREPKDFDVVTNATPNQVKRIFRNCRL- 80
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDG------------RYAKV---------- 107
+ I + + ++ T RS + R+ ++
Sbjct: 81 ---VGRRFRLAHIHFQDEIIEVATFRSPASDEPDPAPKKPDETEQRHPRMLKDDDGMILR 137
Query: 108 -VFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165
+ D+LRRDFT+N+L + +ID+ GGL DL I+ IGD R ED +
Sbjct: 138 DNVYGTPEEDALRRDFTVNSLAYNIADFSIIDFTGGLADLSAGIIRTIGDPAVRFQEDPV 197
Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
R+LR RF A G I+ A + A + + R++ E+ KL + H+
Sbjct: 198 RMLRAVRFAAQLGF-TIEEQTRKALVAATDTIVRSAPPRLYEEVLKLFLSGEGAKCYDHL 256
Query: 226 YNGGIFKEIFLDVQEISLDQ------------LSQVIEAEQVFEWKIDSLLRFIVLISWQ 273
G+F +F D + L+ V Q LL ++ +
Sbjct: 257 SRTGLFAALFPDFSNWLGVEGECFPHTRFGEMLAHVDSRIQQGHKVSPPLLLALLFGEYI 316
Query: 274 DKKSILSMAKKFSLP------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
D K+ + +I+ + +S K
Sbjct: 317 DDKAERFRRQNMPWQQSVNAAVAEFMGETCPIVMIANRVGIALRDIISQQMRLKKIPGRR 376
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ +IA+ + Y +T + I++ L
Sbjct: 377 PESLIARNDFSDIIEYCRITRGNRKDIVKQLDWWE 411
>gi|255311216|ref|ZP_05353786.1| polyA polymerase [Chlamydia trachomatis 6276]
gi|255317518|ref|ZP_05358764.1| polyA polymerase [Chlamydia trachomatis 6276s]
Length = 425
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 7/232 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F
Sbjct: 42 FSTHALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNC---- 97
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYA 129
I + I + ++ T RS + K + D LRRDFTIN L+
Sbjct: 98 ILVGKRFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFY 157
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + +IDY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L
Sbjct: 158 DPSAEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYAF-TVDPKTLE 216
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
A ++ L S R++ EI K+L + + + +F + +
Sbjct: 217 ALQESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMAK 268
>gi|69145904|gb|AAZ03499.1| poly(A) polymerase [Photobacterium angustum S14]
Length = 480
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 69/396 (17%), Positives = 136/396 (34%), Gaps = 46/396 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK + +VGG VRD L++ +D DIAT P+ + ++F R
Sbjct: 50 SENALKVLYRLNKAGYDAYLVGGGVRDLLLDKQPKDFDIATNATPEDIKKLFRNCRL--- 106
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYA----------------------KVVF 109
+ I+ + ++ T R A +
Sbjct: 107 -IGRRFRLAHILFGRDIIEVATFRGHHSDAPIQATAPKDSKQKPQISSRSQEGMLLRDNV 165
Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168
+ D+ RRDFTINALY + V DY G++DL NR ++ +GD R ED +R+L
Sbjct: 166 YGTIEEDAERRDFTINALYYSVKDFTVTDYANGVHDLNNRIVRLMGDPETRYREDPVRML 225
Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228
R RF ID + + S R++ E KLL++ L +
Sbjct: 226 RAVRFAVKLDM-EIDPATAAPIKDLAPLMLDIPSARLFEESLKLLQSGQGLETYRMLREY 284
Query: 229 GIFKEIFLDVQEI-----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+F+++F + + ++ + + + +++ + ++ +
Sbjct: 285 NLFQQLFPILADHFTEDNSSQTEKMIEHILASTDKRIAEDKRVNPAFIYAAMLWYPMMIR 344
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
++ L + + + + + I + + +L+
Sbjct: 345 AEEVSFASGLSFYDAFMV---ASNDILDDQVRTIAIPRRHTTTVRDIWQQQLRFARRSGK 401
Query: 338 NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373
+ + G DV +
Sbjct: 402 RAFKTMEHPKFRAAYDFLEMRALFE----GHDVKEL 433
>gi|303228900|ref|ZP_07315711.1| HDIG domain protein [Veillonella atypica ACS-134-V-Col7a]
gi|302516426|gb|EFL58357.1| HDIG domain protein [Veillonella atypica ACS-134-V-Col7a]
Length = 470
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 61/258 (23%), Positives = 117/258 (45%), Gaps = 4/258 (1%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I +L++L + ++ I+GGAVRD LM++ D DI T+ P++V+ + +
Sbjct: 2 EQAIRLLTILEEAGFEAFIIGGAVRDMLMHVKPHDFDIVTSARPEQVISVLGDANIETTG 61
Query: 73 -TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYA 129
S+G + I K++++ T R + + ++ + D RRDFT+N +
Sbjct: 62 IIGKSFGVVVAIVDGKHYEVATYRKERYGADSHRPEEVIYADTLEEDVKRRDFTVNGMAM 121
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
++ +VID VGG D++++ ++ IG+ R ED LR+ R RF A S
Sbjct: 122 NRYKEVIDLVGGRRDIKHKVLRTIGNPEERFQEDALRLFRACRFVAKLDFLPDKSLLEAM 181
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
KA + LS ER+ +E+++LL + + + + V+ + ++ +
Sbjct: 182 P-KAFHRVSGLSLERVRNELDRLLLESAVAKGLDVLVQSRLAECSCRIVENGEIKEVPIL 240
Query: 250 IEAEQVFEWKIDSLLRFI 267
E + +
Sbjct: 241 PELYHLVGLPQEKAFHEF 258
>gi|308234520|ref|ZP_07665257.1| metal dependent phosphohydrolase [Atopobium vaginae DSM 15829]
gi|328944115|ref|ZP_08241580.1| polyA polymerase family protein [Atopobium vaginae DSM 15829]
gi|327492084|gb|EGF23858.1| polyA polymerase family protein [Atopobium vaginae DSM 15829]
Length = 483
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 89/450 (19%), Positives = 141/450 (31%), Gaps = 51/450 (11%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
I IL++L + IVGG VRD +M DIDIAT+ + R+F + V T
Sbjct: 27 QAIRILTILESHGWSAWIVGGWVRDMVMRQPSHDIDIATSASWQQSERLFCDSGCSVFRT 86
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYADQ 131
+GTI ++ F++TT RS+ T + D RRDFT NAL
Sbjct: 87 GCKHGTITVVLDHYAFEVTTYRSETTYSDHRHPDSVTFVDSIQKDLARRDFTCNALAYHH 146
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ K++D GG++D+ ++ +G A R ED LR+LR RF A
Sbjct: 147 ERKLLDVYGGIDDIHAHILRCVGKADVRFAEDALRMLRALRFQATLHFVLDRDIQTALDR 206
Query: 192 KAKKGLKI-----------------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
+ L+I E + + + +
Sbjct: 207 HYLELLRIAPERIGSEIIKLSTSGLFFRSLRTHEKIFTVCIPEFKELYKCLGDRDFSQYG 266
Query: 235 FLDV--------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274
+ + + + L + + F +R I
Sbjct: 267 NAETAITRCIPEDERFISMVLLISEALPVQVLQDFYKRLERFNVPRAQTMRIIREHEVLH 326
Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
K + R + +K L L D + + A
Sbjct: 327 KLIKEYICCDSKAQNSGRQNCMDDVRRCSMRKELISGLHYLLLKKSPDPYIEMFHLLTFA 386
Query: 335 LHYNNLTHQ---DTCFILQVLSD----IIHWKKP----LFPLTGDDVVKY-GIPPGKKVG 382
Y + C ++ L I K P + G DV++ + GK V
Sbjct: 387 RLYCRTFMKVPTHACIRIEDLRYMLWCIKQQKVPLSCKELAINGYDVMEVCNMSAGKGVA 446
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
L H S+ L L+ L
Sbjct: 447 CTLEHVLALVQEGRLVNSRCVLRAYLKNLK 476
>gi|15605135|ref|NP_219920.1| polyA polymerase [Chlamydia trachomatis D/UW-3/CX]
gi|3328838|gb|AAC68007.1| PolyA Polymerase [Chlamydia trachomatis D/UW-3/CX]
gi|296435931|gb|ADH18105.1| polyA polymerase [Chlamydia trachomatis G/9768]
gi|296436858|gb|ADH19028.1| polyA polymerase [Chlamydia trachomatis G/11222]
gi|296437792|gb|ADH19953.1| polyA polymerase [Chlamydia trachomatis G/11074]
gi|297140292|gb|ADH97050.1| polyA polymerase [Chlamydia trachomatis G/9301]
gi|297748540|gb|ADI51086.1| Poly(A) polymerase [Chlamydia trachomatis D-EC]
gi|297749420|gb|ADI52098.1| Poly(A) polymerase [Chlamydia trachomatis D-LC]
Length = 425
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 72/354 (20%), Positives = 140/354 (39%), Gaps = 14/354 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F
Sbjct: 42 FSTHALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNC---- 97
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYA 129
I + I + ++ T RS + K + D LRRDFTIN L+
Sbjct: 98 ILVGKRFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFY 157
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + +IDY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L
Sbjct: 158 DPSAEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYAF-TVDPKTLE 216
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-------I 241
A ++ L S R++ EI K+L + + + +F + + +
Sbjct: 217 ALQESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMAKAFSLSKTL 276
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+ + + + + R +L ++ K+S + I +
Sbjct: 277 QDQTFACLTALDTKIQKRSFCSERHFLLAILLFPIVNFNVRYKYSQYPTMTIQSIFDYIR 336
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
NF + + + ++ +++ L + + F ++L
Sbjct: 337 NFLTEFFADSFTSCSKKNFILTTLLLQMQYRLTPLNAMKKEKKSFFNRRLLRHA 390
>gi|172087758|ref|YP_205549.2| poly(A) polymerase I [Vibrio fischeri ES114]
gi|171902346|gb|AAW86661.2| poly(A) polymerase I [Vibrio fischeri ES114]
Length = 475
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 18/243 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ + +VGG VRD L+ +D DIAT P+++ ++F R
Sbjct: 53 SDNALKVLYRLSNAGYDAYLVGGGVRDILLGQEPKDFDIATNATPEQIKKLFRNCRL--- 109
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R D G + + D+ R
Sbjct: 110 -IGRRFRLAHILFGRDVIEVATFRGHHKEDNEKKNISAQSDEGMLLRDNVYGTVEEDAER 168
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NA+Y + + DY G+ DL+N I+ IGD R ED +R+LR RF A
Sbjct: 169 RDFTVNAMYYNIADYSIHDYANGIEDLKNGIIRLIGDPETRYREDPVRMLRAVRFAAKLD 228
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + L+ + + R++ E KLL+ N LN + + +F+++F +
Sbjct: 229 M-TICDKTAAPIAELSPLLRDIPAARLFEESLKLLQTGNGLNTYWMLRDFNLFQQLFPVL 287
Query: 239 QEI 241
Sbjct: 288 TPF 290
>gi|304406910|ref|ZP_07388564.1| Polynucleotide adenylyltransferase region [Paenibacillus
curdlanolyticus YK9]
gi|304343897|gb|EFM09737.1| Polynucleotide adenylyltransferase region [Paenibacillus
curdlanolyticus YK9]
Length = 451
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 95/431 (22%), Positives = 165/431 (38%), Gaps = 48/431 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ +L L ++ VGG VRD + S+ DIDIAT LPD VM +F + +P
Sbjct: 13 EAALPVLHTLEHAGYEAVFVGGCVRDVIAGRSITDIDIATAALPDVVMSLFE----RTVP 68
Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T + +GT+ +I ++ +++TT RS D R V F + + D LRRDFTINA+
Sbjct: 69 TGLQHGTVTVIVDERTYEVTTYRSEADYEDYRRPTDVAFIAELEGDLLRRDFTINAMALR 128
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G ++D GGL DLR I+ +G A R ED LR++R RF + +G I A
Sbjct: 129 SNGTLVDPYGGLTDLRRGRIRCVGQAEERFREDALRMVRAVRFASTFGY-AIAPSAWRAL 187
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ----------- 239
++ ++ L+ ++ ERI +E++K++ P A + G+ +
Sbjct: 188 LRNRELLRYVAMERIGAELDKMIGGAGPHRAAALLAASGLLARAKEPLPAGFAKPDCGYR 247
Query: 240 ----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289
D + + A + K D + + + ++ P
Sbjct: 248 QRPALRSGRGAGGADGVPPLTAALARLQSKDDRWAGVFLALR-LSPEDAEETLQRLRFPG 306
Query: 290 EIRYFLISFFNCN-----------FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
S + L+ G + A L+I A +
Sbjct: 307 RRIASARSVVMLHAAAAPLAAASGAAAVPLAAAAWVDAVLAAGVETASAWLRITRAFAAS 366
Query: 339 N-------LTHQDTCFILQVLSDIIHWKKPLFPLTGDDV-VKYGIPPGKKVGNILVHCKQ 390
+ L+ + L+ + + G + G+ PG + G++L +
Sbjct: 367 DGQIGGLTLSSGALEQLAAQLAQMPCTAVRELAVNGSLLCAHLGMKPGPRTGSLLQQLLR 426
Query: 391 EWINSSFQLSQ 401
+
Sbjct: 427 SVALGETPNGR 437
>gi|254784780|ref|YP_003072208.1| poly(A) polymerase [Teredinibacter turnerae T7901]
gi|237686559|gb|ACR13823.1| putative poly(A) polymerase [Teredinibacter turnerae T7901]
Length = 463
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 60/242 (24%), Positives = 108/242 (44%), Gaps = 17/242 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I ++ L ++ +VGG VRD L+ +D D+AT+ P+++ IF R
Sbjct: 40 LISRNAIRVIDQLLDAGYEAYLVGGGVRDLLLGGKPKDFDVATSATPEQLRGIFRNARI- 98
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSL 118
+ + + ++ ++TT R + G + + K D+
Sbjct: 99 ---IGKRFQIVHVRFGREIIEVTTFRDNHAVADDNQQAKQSEHGVLLRDNVYGNLKTDAE 155
Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NALY + +++++ GL DL +R I+ +GD R ED +R+LR RF A
Sbjct: 156 RRDFTVNALYYNPRSRELLEFSTGLEDLNDRVIRIVGDPQTRYREDPVRLLRAVRFAAKL 215
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G I+ + L + R++ E+ KL + + + + +FK +F D
Sbjct: 216 GF-TIEPVTEAPIREHADYLTHIPPARLFEEVLKLFMSGSATATVNLLREYHLFKYLFPD 274
Query: 238 VQ 239
Sbjct: 275 TD 276
>gi|194041294|ref|XP_001925304.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like,
partial [Sus scrofa]
Length = 202
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L + L K + I GGAVRD L + QD+D ATT P ++ +F +
Sbjct: 40 LFTEGLKTLTELFVKENHELRIAGGAVRDLLSGVKPQDVDFATTATPVQMKELFQSVGIR 99
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 100 MINNKGEKHGTITARLHEENFEITTLRVDVATDGRHAEVEFTTDWQKDAERRDLTINSMF 159
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171
G + DY G DL+N+ ++F+G A RI EDYLRILR+F
Sbjct: 160 LGFDGTLFDYFNGYEDLKNKKVRFVGQAKQRIQEDYLRILRYF 202
>gi|91774955|ref|YP_544711.1| poly(A) polymerase [Methylobacillus flagellatus KT]
gi|91708942|gb|ABE48870.1| poly(A) polymerase [Methylobacillus flagellatus KT]
Length = 452
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 67/361 (18%), Positives = 134/361 (37%), Gaps = 19/361 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I L K ++ IVGGAVRD L+ +D D+AT P++V RIF ++R
Sbjct: 42 LISNAAIKTTDALQKAGFEAFIVGGAVRDLLLKKRPKDFDVATDATPEQVHRIFRRSRI- 100
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDL---------ITDGRYAKVVFTRDWKADSLRR 120
+ + ++ + +++T R GR + + D+ RR
Sbjct: 101 ---IGRRFRLVHVMFGDETIEVSTFRGSHLAEAGDAKVTDSGRILRDNVFGSQEEDAARR 157
Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFT NALY D + + D+ G+ DL+ ++ IGD R ED +R+LR R A G
Sbjct: 158 DFTANALYYDPSTEEVLDFHRGVADLQAGVLRMIGDPVTRYREDPVRMLRAVRLSAKLG- 216
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD-- 237
+ + ++ + L + R++ E+ KL + + + + + G+ +
Sbjct: 217 LKLAPETERPILELAELLHDVPPSRLFDEMLKLFLSGHAIESANALRQHGLHHGLLPLLD 276
Query: 238 --VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+++ ++ ++ D + L + +L KKF
Sbjct: 277 VVLEQPMGERFVRLALKNTDERVLADKPVSPGFLFAALLWHEVLLAWKKFEQQGNKPIPA 336
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
+ I K + + ++ + + + + +
Sbjct: 337 LHMAMDEVCDIQAEKMAIHKRYSVTMREIWSLQPRFEQRAGRRPYSLLENPRYRAGYDFL 396
Query: 356 I 356
+
Sbjct: 397 L 397
>gi|303231232|ref|ZP_07317970.1| HDIG domain protein [Veillonella atypica ACS-049-V-Sch6]
gi|302514139|gb|EFL56143.1| HDIG domain protein [Veillonella atypica ACS-049-V-Sch6]
Length = 470
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 61/258 (23%), Positives = 118/258 (45%), Gaps = 4/258 (1%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I +L++L + ++ I+GGAVRD LM++ D DI T+ P++V+ + +
Sbjct: 2 EQAIRLLTILEEAGFEAFIIGGAVRDMLMHVKPHDFDIVTSARPEQVISVLGDANIETTG 61
Query: 73 -TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYA 129
S+G + I K++++ T R + + ++ + D RRDFT+N +
Sbjct: 62 IIGKSFGVVVAIVDGKHYEVATYRKERYGADSHRPEEVIYADTLEEDVKRRDFTVNGMAM 121
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
++ +VID VGG D++++ ++ IG+ R ED LR+ R RF A S
Sbjct: 122 NRYKEVIDLVGGRRDIKHKVLRTIGNPTERFQEDALRLFRACRFVAKLDFLPDKSLLEAM 181
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
KA + LS ER+ +E+++LL + + + + V+ ++ ++ +
Sbjct: 182 P-KAFHRVSGLSLERVRNELDRLLLEPAVAKGLDVLVQSRLAECSCRVVENGAIKEVPIL 240
Query: 250 IEAEQVFEWKIDSLLRFI 267
E + +
Sbjct: 241 PELYHLVGLPQEKAFHEF 258
>gi|86133852|ref|ZP_01052434.1| multifunctional CCA protein [Polaribacter sp. MED152]
gi|85820715|gb|EAQ41862.1| multifunctional CCA protein [Polaribacter sp. MED152]
Length = 487
Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats.
Identities = 74/449 (16%), Positives = 155/449 (34%), Gaps = 59/449 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPD----RVMRIFS 64
I E + ++GG VRD ++ + +DIDI +V ++
Sbjct: 24 LTSEIFTFISQAAKNLEIDAYVIGGYVRDFFLDRGTAKDIDIVAVGSGIDLALQVSKLLP 83
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ +YGT + + + R + T+ V + D RRDFTI
Sbjct: 84 NK--PKVQVFKTYGTAMLRYKDIEIEFVGARKESYTENSRNPQVSSGTLVDDQNRRDFTI 141
Query: 125 NALYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
NAL ++D G+ DL ++ I+ + +D LR++R RF
Sbjct: 142 NALALSLNDANFGDILDPFNGMKDLEDKIIRTPLNPDITYSDDPLRMMRAIRFATQLNF- 200
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-- 238
I++ L A K LKI++ ERI E+NK+L AK P + + + +I ++
Sbjct: 201 EIEASSLAAISKNAHRLKIITKERIVVELNKILAAKKPSIGFLLLEKTKLLPQILPELIA 260
Query: 239 ---------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----KKF 285
Q+ + + + + + D LR+ L+ K + F
Sbjct: 261 LKGVEEVEGQKHKDNFYHTLEVVDNISKNTEDVWLRWAALLHDIGKAPTKRFSKKVGWTF 320
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------A 327
+ ++ + + + L + ++
Sbjct: 321 HGHEFVGSKMVYKIFKRLKMPLNAKMKFVQKMVLLSSRPIVLASDVTDSAVRRLVFDAGE 380
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDII-------------HWKKPLFPLTGDDVV-KY 373
++ + L ++T ++ + + + P+TG++++ +
Sbjct: 381 EINDLMTLCEADITTKNPRKFKKYHKNFELVRKKIKEVEERDRIRNFQPPITGEEIMTAF 440
Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQE 402
+ P +++G I K+ + +
Sbjct: 441 NLKPCREIGQIKEAIKEAILEGEIPNEHQ 469
>gi|237804757|ref|YP_002888911.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT]
gi|231273057|emb|CAX09970.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT]
Length = 425
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 73/354 (20%), Positives = 140/354 (39%), Gaps = 14/354 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F
Sbjct: 42 FSTHALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNC---- 97
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYA 129
I + I + ++ T RS + K + D LRRDFTIN L+
Sbjct: 98 ILVGKRFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFY 157
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + +IDY GG+ DL+NR +K IGD R +D +R+LR + + Y +D L
Sbjct: 158 DPSAEIIIDYTGGVEDLKNRYLKTIGDPFLRFKQDPVRMLRLLKILSRYAF-TVDPKTLE 216
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-------I 241
A ++ L S R++ EI K+L + + + +F + + +
Sbjct: 217 ALQESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMAKAFSLSKTL 276
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+ + + + + R +L ++ K+S + I +
Sbjct: 277 QDQTFACLTALDTKIQKRSFCSERHFLLAILLFPIVNFNVRYKYSQYPTMTIQSIFDYIR 336
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
NF + + + ++ +++ L + + F ++L
Sbjct: 337 NFLTEFFADSFTSCSKKNFILTTLLLQMQYRLTPLNAMKKEKKSFFNRRLLRHA 390
>gi|161525796|ref|YP_001580808.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616]
gi|189349483|ref|YP_001945111.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616]
gi|160343225|gb|ABX16311.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616]
gi|189333505|dbj|BAG42575.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616]
Length = 512
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 78/430 (18%), Positives = 147/430 (34%), Gaps = 59/430 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 67 LISKNAVRVTDTLQQAGYRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR---------------------------SDLITDG 102
+ + + ++ +++T R + G
Sbjct: 126 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPPEAATAEPPKRLKRDELDRRTHAVDASG 182
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 183 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRYR 242
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A G I+ + + + R++ E+ KLL + + L
Sbjct: 243 EDPVRMLRVVRFAAKLGF-EIEPHTREPINALADLINNVPAARLFDEMLKLLLSGHALAC 301
Query: 222 IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 302 LQRLRKEGLHHGLLPLLDVV--LEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATLLW 359
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
+ + + ++ + L L +
Sbjct: 360 HDMRQRFEQYTAEGEFPVPALHRAMDDVLDMQTEKLAIHKRYSADMREIWGLQLRLEKRS 419
Query: 342 HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG---KKVGNILVHCKQEW---INS 395
+ +L+ G D + G VG W I
Sbjct: 420 GRSALRLLEHQRFRA----------GYDFLLLRCESGELDPAVGQ-------WWTDFIEG 462
Query: 396 SFQLSQEDLH 405
++E L
Sbjct: 463 D-ATAREALL 471
>gi|30248100|ref|NP_840170.1| poly A polymerase family protein [Nitrosomonas europaea ATCC 19718]
gi|30179985|emb|CAD83980.1| Poly A polymerase family [Nitrosomonas europaea ATCC 19718]
Length = 460
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 82/415 (19%), Positives = 145/415 (34%), Gaps = 48/415 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
S + + L + + +VGGAVRD L+ L +D D+AT P+ V +F +R
Sbjct: 40 SSGSLKVALALQQAGYSAYVVGGAVRDLLLGLKPKDYDVATNATPEEVRAVFRHSRI--- 96
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADS 117
+ + +I + + +++T R + D GR + D
Sbjct: 97 -IGRRFRLVHVISKGEIVEVSTFRGKMADDLVETEDVQANTDATGRLLHDNVFGSQEEDV 155
Query: 118 LRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFTINAL+ D + I DY+ G D+ + ++ IG+ R ED +R+LR R A
Sbjct: 156 RRRDFTINALFYDPATEEILDYLDGFEDVMAKRLRIIGEPEQRYREDPVRMLRAVRLSAK 215
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
G + ID L + R++ E+ KLL + + L A++ + G+ +
Sbjct: 216 LGIQ-IDDRTAAPIGDLAPLLLNVPPARLFDEMLKLLFSGHALAAVIDLRARGLHHGLLP 274
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ I L + RFI L+ + +
Sbjct: 275 MLDVILEQPLGE----------------RFISLVLKNTDERVRQDKPVSPGFLFAALLWH 318
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV----- 351
S I L GD + + ++ + ++ + + +
Sbjct: 319 EVLAVWDTHLKASEKMIPALHRAMGDVLATQRSRLAIPRRHDGIIYDIWSMQPRFQARSG 378
Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
+ P FP D + G + Q W F+ +
Sbjct: 379 RKPFRLLEHPHFP-AAYDFMLLRCKSG----EVDQELGQWW--QIFKNTDNAARE 426
>gi|323495885|ref|ZP_08100953.1| poly(A) polymerase [Vibrio sinaloensis DSM 21326]
gi|323319101|gb|EGA72044.1| poly(A) polymerase [Vibrio sinaloensis DSM 21326]
Length = 454
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 67/354 (18%), Positives = 125/354 (35%), Gaps = 20/354 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ + +VGG VRDSL+ +D DIAT P+++ ++F R
Sbjct: 37 SDNALKVLYRLHGAGFDAYLVGGGVRDSLLGQQPKDFDIATNATPEQIRQLFKNCRL--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R G + D+ RRD
Sbjct: 94 -IGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSQQSKEGMLLRDNVYGTIDEDAERRD 152
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+Y + DY GG+ DL ++ ++ IGD R ED +R+LR RF
Sbjct: 153 FTINAMYYSIADYSIHDYAGGIEDLEDKLVRLIGDPETRYREDPVRMLRAIRFAVKLDF- 211
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+ D L+ + R++ E K+L++ + L M +F+++F + E
Sbjct: 212 DIEEDTAAPIEDMAVLLRDIPPARLYEESLKMLQSGHGLETYHLMREYNLFQQLFPTIAE 271
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+ E + R +M + +
Sbjct: 272 FFTEDYDSPTEQMLDLVLD-STDQRIEEGKRINPAFMFAAMLWYPLQAKAEQLMEKRNLA 330
Query: 301 CNFNQKTLSIP---EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
S + + + + L L + ++++
Sbjct: 331 HYDAIMEASNMILDDQVRSIAIPRRHTATIREIWQLQLRMPRRNGKRAFRLMEL 384
>gi|304316792|ref|YP_003851937.1| polynucleotide adenylyltransferase region [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778294|gb|ADL68853.1| Polynucleotide adenylyltransferase region [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 394
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 81/407 (19%), Positives = 134/407 (32%), Gaps = 23/407 (5%)
Query: 13 SDLINILSLLNKG-EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D++ IL +++ KS IVGG +RD ++NL DIDI R + +K I
Sbjct: 3 KDILLILRKVSEEMGVKSYIVGGYIRDKILNLESNDIDITVEGDGIRYALMLNKILNGKI 62
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+ T KI K FD+ + R + T V D D RRDFTIN L D
Sbjct: 63 EIHEKFKTAKIQADKYTFDVVSARKEYYTHSGILPDVELADIVEDIKRRDFTINMLAFDI 122
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ +I + D + + +D RI R R+ K L+
Sbjct: 123 KEGMIIDLCNGLDDIKNKLIRV-VHDKSFNDDPTRIFRALRYSVRLDFKLEPHTELLLKQ 181
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
G S L+ ++ IV + E D +I++ L+
Sbjct: 182 SIANGDFDNLSTDRIMNEIYLILSEKNPETIVKLMKHYRIDEKIFDGIKINIRNLNT--- 238
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
V L F + + +
Sbjct: 239 ---------------CVRCGDLLLYRFLLFFYNVKKDDLDYLNEKFNFKRQYTKGLSDLI 283
Query: 312 EIKKLFYLYGDKVMI-AKLKIFLALHYNNLTHQDTCFILQVLS-DIIHWKKPLFPLTGDD 369
EIK Y D ++ K N + + I +++ + + GDD
Sbjct: 284 EIKMNLYTLKDDIVAYNLFKDKKIEAINAIYTMEGENIKKIVDRYFEVIRSLKLEINGDD 343
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ + G+ P IL + + I + S+ED L++ + +
Sbjct: 344 IKELGLRPSPIYKKILDNIYYDKICGKIR-SKEDEFERLKQYVEKVK 389
>gi|270307779|ref|YP_003329837.1| polyA polymerase, tRNA nucleotidyltransferase [Dehalococcoides sp.
VS]
gi|270153671|gb|ACZ61509.1| polyA polymerase, tRNA nucleotidyltransferase [Dehalococcoides sp.
VS]
Length = 418
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 79/417 (18%), Positives = 153/417 (36%), Gaps = 24/417 (5%)
Query: 9 WFHD---SDLIN-ILSLLNKGEDK---SCIVGGAVRDSLMNLSVQDIDIATTILPDRV-M 60
+ + ++ IL + + + GG VRD L++ + +D D+ T
Sbjct: 9 FLKNRLPPEINRLILHAAERAASQNLYLYLAGGMVRDFLLDKTPKDADLVLTANAILFGQ 68
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+F KT YK + + + DIT+ RS++ V D +AD RR
Sbjct: 69 NLFEKTPYK-VTLHHRFNNLSADINGFKLDITSARSEIYPVPGKLPEVLEGDIRADLFRR 127
Query: 121 DFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
DF INA+ G + D GL DL+ + + +D RI R R+
Sbjct: 128 DFKINAMAISLSPQDFGHLADPYNGLTDLKQGKLSVLHP--KSFQDDPSRIWRALRYSER 185
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
G +I D L ++ + ++ ++R+W EI + + P N ++ G+ +
Sbjct: 186 LGF-SISGDTLPLLLRDAHLIPLIGADRLWYEIECVFKEAKPENILLKAEETGVLRNSLP 244
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ + EA +++ + + +L + D S+ + L + + L
Sbjct: 245 FAKADKWLA-DKFTEAREIYGENVSPEIYLCLLTAHMDSPQADSLITRLHLGKHLSACLK 303
Query: 297 SFFNCNFNQKTLSIPE-IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
+++ L + Y K L+ F N L ++ + L
Sbjct: 304 DCQYLAEHREELDMAALSPSRLYSLLAKCKKEALQAFYVSADNPLVRKNLLLFHERL--- 360
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
L G D++ G PG + IL ++ +++ ++ R+L
Sbjct: 361 ---SAVKPYLKGADLIALGFAPGPNIKTILTELLNLKLDGKVSSRIDEIDYVKRRLA 414
>gi|329119544|ref|ZP_08248228.1| poly(A) polymerase [Neisseria bacilliformis ATCC BAA-1200]
gi|327464331|gb|EGF10632.1| poly(A) polymerase [Neisseria bacilliformis ATCC BAA-1200]
Length = 467
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 77/378 (20%), Positives = 136/378 (35%), Gaps = 33/378 (8%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+S L + ++ +VGGAVRD L+ +D D+AT P+ V +F ++R
Sbjct: 55 AAEKTVSRLQQAGYEAYVVGGAVRDLLIGAQPKDFDVATDATPEEVRALFRRSRI----I 110
Query: 74 SISYGTIKIICRKKYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + + + ++TT R + GR K D+ RRDFT NALY
Sbjct: 111 GRRFRIVHVQVGPETIEVTTFRGNGGAVQNEQGRIMKDNTYGTLAEDAGRRDFTCNALYF 170
Query: 130 DQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + ++ D+ G+ D+R R I IG+ R ED +RILR R G I+
Sbjct: 171 DPVKREIHDFHHGVQDVRQRRIVMIGNPAERYQEDPVRILRAIRLAGKLGF-TIEERTAA 229
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------- 241
+ LK R++ EI KLL + + + + GI I + +
Sbjct: 230 PAADYAGRLKEEPPARLFDEITKLLFSGHAGRCLGQIRALGIAARIHPLLDALQQAAADG 289
Query: 242 -------SLDQLSQVIEAEQ---------VFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
SL + + A++ W + L + LS A
Sbjct: 290 SGGIIGESLRNTDERVRADKSVSAGFVLAALMWDKLNALWQQNQANGLKPAPALSRAIAD 349
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345
R + + ++ + ++A+L+ A + L +
Sbjct: 350 LDDTVERGWGVPQKFSATMREIWILQPQFDNRRGMRPHRLLAQLRFRAAYDFLVLRAKTG 409
Query: 346 CFILQVLSDIIHWKKPLF 363
++ ++
Sbjct: 410 SAPQELADWWTTFQHAEP 427
>gi|90580267|ref|ZP_01236074.1| putative polyA polymerase [Vibrio angustum S14]
gi|90438569|gb|EAS63753.1| putative polyA polymerase [Vibrio angustum S14]
Length = 447
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 69/396 (17%), Positives = 136/396 (34%), Gaps = 46/396 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK + +VGG VRD L++ +D DIAT P+ + ++F R
Sbjct: 17 SENALKVLYRLNKAGYDAYLVGGGVRDLLLDKQPKDFDIATNATPEDIKKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYA----------------------KVVF 109
+ I+ + ++ T R A +
Sbjct: 74 -IGRRFRLAHILFGRDIIEVATFRGHHSDAPIQATAPKDSKQKPQISSRSQEGMLLRDNV 132
Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168
+ D+ RRDFTINALY + V DY G++DL NR ++ +GD R ED +R+L
Sbjct: 133 YGTIEEDAERRDFTINALYYSVKDFTVTDYANGVHDLNNRIVRLMGDPETRYREDPVRML 192
Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228
R RF ID + + S R++ E KLL++ L +
Sbjct: 193 RAVRFAVKLDM-EIDPATAAPIKDLAPLMLDIPSARLFEESLKLLQSGQGLETYRMLREY 251
Query: 229 GIFKEIFLDVQEI-----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+F+++F + + ++ + + + +++ + ++ +
Sbjct: 252 NLFQQLFPILADHFTEDNSSQTEKMIEHILASTDKRIAEDKRVNPAFIYAAMLWYPMMIR 311
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
++ L + + + + + I + + +L+
Sbjct: 312 AEEVSFASGLSFYDAFMV---ASNDILDDQVRTIAIPRRHTTTVRDIWQQQLRFARRSGK 368
Query: 338 NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373
+ + G DV +
Sbjct: 369 RAFKTMEHPKFRAAYDFLEMRALFE----GHDVKEL 400
>gi|294635067|ref|ZP_06713582.1| polyA polymerase [Edwardsiella tarda ATCC 23685]
gi|291091532|gb|EFE24093.1| polyA polymerase [Edwardsiella tarda ATCC 23685]
Length = 457
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 77/385 (20%), Positives = 136/385 (35%), Gaps = 45/385 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK + +VGG VRD L+ +D D+ T P++V ++F R
Sbjct: 33 SENALKVLYRLNKSGFDAYLVGGGVRDLLLGKRPKDFDVTTNATPEQVRKLFRNCRL--- 89
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------------DGRYAKVVFTRDWKADSLR 119
+ ++ + ++ T R +G + + + D+ R
Sbjct: 90 -VGRRFRLAHVMFGPEIIEVATFRGHHEHADEGKNISQQGKNGMLLRDNVYGNIEEDAQR 148
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN+LY V DY GGLNDLR I+ IGD R ED +R+LR RF A
Sbjct: 149 RDFTINSLYYSVADFTVRDYTGGLNDLRAGLIRLIGDPETRYREDPVRMLRAVRFAAKL- 207
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-- 236
+I + + L+ + + R++ E KLL+A + + +F+ +F
Sbjct: 208 RMDISPETAAPIARLAPLLRDIPAARLFEEALKLLQAGYGYETYLKLREYQLFQPLFPVI 267
Query: 237 ----------DVQEISLDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQD----------- 274
++ I L + L ++ +
Sbjct: 268 CRHFTPNGDSPMENILAQVLKNTDHRLQNDMRVNPAFLFAAMLWYPLIELAQKITQEGGL 327
Query: 275 -KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333
++A L + R I + ++ +L G + +
Sbjct: 328 TYHDAFALAMNDILDEQCRSLAIPKRITALIRDIWTL--QLRLSRRQGKRAHKLLEQPKF 385
Query: 334 ALHYNNLTHQDTCFILQVLSDIIHW 358
Y+ L + L + W
Sbjct: 386 RAAYDLLALRAEAERSAELQRLAEW 410
>gi|284049150|ref|YP_003399489.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acidaminococcus fermentans DSM 20731]
gi|283953371|gb|ADB48174.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acidaminococcus fermentans DSM 20731]
Length = 481
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 86/473 (18%), Positives = 174/473 (36%), Gaps = 73/473 (15%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PT 73
+ ++ +L ++ +VGGAVRD L+ + D D+ T P+ ++R V+
Sbjct: 9 VKTVMDVLQARGFQAHVVGGAVRDMLLGRTPDDYDVVTNARPEEIIRTAEDAGIPVVSEL 68
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG---RYAKVVFTRDWKADSLRRDFTINALYAD 130
++G + + + ++ R++ G R ++V + + + D RRDFTINAL D
Sbjct: 69 GQNFGVVILRVERHGVEVAAYRNETYGSGDAHRPSEVWYCKTLEEDLSRRDFTINALAVD 128
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
Q+G + D GL+DLR R ++ +GD R ED LR+ R RF G +
Sbjct: 129 QEGHITDCFHGLDDLRGRVLRTVGDPDRRFSEDALRMFRACRFVGQLGFAPDPAILPAIG 188
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE------ISLD 244
+ + + LS ER+ +E+NKLL + M G+ E ++ L
Sbjct: 189 -RNLQKVPGLSLERVRTELNKLLMGTYAGEGMDLMVKSGLAAESCRVRRKGQYETVPILP 247
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL------------------------- 279
+L+ ++ Q ++ + + + + +S+
Sbjct: 248 ELTHLVGLGQNPQFHPYDVWKHTAVALDKGDRSLEVGWGILLHDVAKGLEGVRGINREGQ 307
Query: 280 ---------------SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324
+ ++ LPRE+ + + + +S E K ++ +
Sbjct: 308 PCDHGHEAVGAALARQILERLQLPREVVDRVAWLVKNHMHFGFISAQEDSKTWHWLRKEA 367
Query: 325 ----------MIAKLKIFLALHYNNLTHQDTC-----------FILQVLSDIIHWKKPLF 363
M K A+ ++ + L ++ ++
Sbjct: 368 RSGHFRLNKEMAEAFKQLTAVCVADVAATNAAQNDVIHAQMYGKRLVKMAYLMPVHTSDL 427
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+G D + G P ++ ++ + + + E L RK + +
Sbjct: 428 DFSGKDALTLGAAP-AQLKELMPVLLRRVQDRMLENDPEQLALAARKWLERQK 479
>gi|156742435|ref|YP_001432564.1| polynucleotide adenylyltransferase region [Roseiflexus castenholzii
DSM 13941]
gi|156233763|gb|ABU58546.1| Polynucleotide adenylyltransferase region [Roseiflexus castenholzii
DSM 13941]
Length = 872
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 57/420 (13%), Positives = 137/420 (32%), Gaps = 18/420 (4%)
Query: 7 HKWFHDSDLINILS----LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
++ D L+ IL + + IVGGAVRD ++ D+D+ +
Sbjct: 446 ERFL-DPALLAILRRAGAIAQQRGAALYIVGGAVRDMILERKPDDLDLVVEGDAIGLAEA 504
Query: 63 FSKTRYKVIPTSISYGTIKI---ICRKKY--FDITTLRSDLITDGRYAKVVFTRDWKADS 117
+ + + ++GT + + D R++ V + D
Sbjct: 505 LATELGGAVRSHSAFGTATLTLKRLDGEPLTLDFVMARTEFYERPSALPDVEAASLRHDL 564
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFA 175
RRDFTIN L ++ R + + + ++D RILR R A
Sbjct: 565 HRRDFTINTLAICLNPTRYGWLYDFYGGRRDMNRKLIRVLHNLSFIDDPTRILRAARLAA 624
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWS-EINKLLEAKNPLNAIVHMYNGGIFKEI 234
G + ++G+ ++ + E+ +L ++P A+ + + G+ + +
Sbjct: 625 RLGFVIEPRTRALIGDALEQGVLGRATPQRIMHELRLILAEEHPEPALALLDDLGVLRAM 684
Query: 235 FLDV--QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
+ + + +A D L ++ D+++ + +
Sbjct: 685 HPALRWSPAIAEWFAAARQAAFPDAPLPDLYLALLLYPLIGDERTAFAARYRLPASEARL 744
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
++ + + + + + I +
Sbjct: 745 LADLTLVHERVEMLRSAAEGSDQWIADSAIDRALHGIGIVALRAAQIAEPPPVPQYIA-- 802
Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
I + + + G + G+ PG + G +L + ++ +++E+ +R+ +
Sbjct: 803 RYIDYLRSVKLAVDGKFLESLGLRPGPRFGELLAALRAAHLDG-IAVTREEQEAWIRQAV 861
>gi|194365293|ref|YP_002027903.1| poly(A) polymerase [Stenotrophomonas maltophilia R551-3]
gi|194348097|gb|ACF51220.1| poly(A) polymerase [Stenotrophomonas maltophilia R551-3]
Length = 461
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 14/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + +VGGAVRD L+N +D D+AT P++V ++F R
Sbjct: 41 SPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRNCRL--- 97
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--------DWKADSLRRDFT 123
+ ++ ++ ++ T R++ ++ + D++RRDFT
Sbjct: 98 -IGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAIRRDFT 156
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DY GG D++ R +K IGD R ED +R+LR R A G + I
Sbjct: 157 CNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPVQRYQEDPVRMLRAVRLAAKLGFQ-I 215
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+ + L + R++ E+ KL + + + + + G+ +F +
Sbjct: 216 EEGTAAPIPQLASLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLFPE 270
>gi|85858488|ref|YP_460690.1| tRNA nucleotidyltransferase [Syntrophus aciditrophicus SB]
gi|85721579|gb|ABC76522.1| tRNA nucleotidyltransferase [Syntrophus aciditrophicus SB]
Length = 875
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 63/400 (15%), Positives = 136/400 (34%), Gaps = 21/400 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L L +VGG VRD +M + D+D+ + ++ +
Sbjct: 464 LKKSGELAESMGFNLFLVGGIVRDMVMRIENLDVDLVVEGDGIIFAKALAEAFGGKVSPH 523
Query: 75 ISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
Y T + + D+ T R + V K D RRDFTIN +
Sbjct: 524 EKYKTAVVRLPGGRRIDLATARLEYYRMPGAFPEVEESTLKLDLYRRDFTINTMAVALNP 583
Query: 134 KVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHY-GEKNIDSDGLVAS 190
+ + + +ED RILR RF + + L++S
Sbjct: 584 HRFGELIDFFGAQRDIREKKIRVLHSLSFVEDPSRILRAVRFEKRFNFCLGKQTVSLISS 643
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--------QEIS 242
L+ + RI+ E+ ++L+ +NP+ + ++ + + I D+ +S
Sbjct: 644 AVQAGFLRNIPGRRIFHEMRQILQEENPVRCMDRLHELKVLEAIHPDLVFDERIRESFVS 703
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI---SFF 299
+ + E L + L + ++++S+A+ L RE L+
Sbjct: 704 VRETLFWFRLLYTHEKVRPWFLYCLALTEPMNPETVMSIAEALGLRREDAEMLLASRERV 763
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ + + + + ++ ++ + + + + W+
Sbjct: 764 RELMKRLASLSEILPSKAFGILEDAALEEMLYAMSRSRSATFKKIFS------TYVTSWR 817
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399
P++G D++ G ++G L + + +N +
Sbjct: 818 NYRPPVSGKDLLVIGFSQNPELGRCLREIRDQGLNGEIRD 857
>gi|190573757|ref|YP_001971602.1| putative poly(A) polymerase [Stenotrophomonas maltophilia K279a]
gi|190011679|emb|CAQ45298.1| putative poly(A) polymerase [Stenotrophomonas maltophilia K279a]
Length = 461
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 14/235 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + +VGGAVRD L+N +D D+AT P++V ++F R
Sbjct: 41 SPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRNCRL--- 97
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--------DWKADSLRRDFT 123
+ ++ ++ ++ T R++ ++ + D++RRDFT
Sbjct: 98 -IGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAVRRDFT 156
Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY V DY GG D++ R +K IGD R ED +R+LR R A G + I
Sbjct: 157 CNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPVQRYQEDPVRMLRAVRLAAKLGFQ-I 215
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+ + L + R++ E+ KL + + + + + G+ +F +
Sbjct: 216 EEGTAAPIPQLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLFPE 270
>gi|56750577|ref|YP_171278.1| polyA polymerase [Synechococcus elongatus PCC 6301]
gi|56685536|dbj|BAD78758.1| similar to polyA polymerase [Synechococcus elongatus PCC 6301]
Length = 909
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 82/457 (17%), Positives = 155/457 (33%), Gaps = 60/457 (13%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMN-----LSVQDIDIATT---- 53
++ +W L + + +VGG VRD + L + DID+
Sbjct: 462 RLIPAQW---ELLETVAHFAEERGWHLYLVGGGVRDLFLAPSDAPLLISDIDLVVDGFHR 518
Query: 54 ----ILPDRVMRIFSKTRYKV-IPTSISYGTIKIICRKK------YFDITTLRSDLITDG 102
+ ++ + + + T ++ + + DI T R++
Sbjct: 519 ALTEAAGVELAQLLRDRYPQARLEVHGRFQTAALLWHEDPVFQSLWVDIATARTEFYPYP 578
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHH 158
V + D RRDFTINAL G+++D+ GG DL R ++ + +
Sbjct: 579 AANPEVEASSIRQDLYRRDFTINALAIRLTEPHAGELLDFFGGRLDLEARQVRVLHV--N 636
Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASI----------KAKKGLKILSSERIWSE 208
+ED RI R RF G + + + G+ R+ +E
Sbjct: 637 SFIEDPTRIFRAVRFAVRLGFAIEEQTRRQIRYALDSGVYQRTQGENGVTPALQTRLRAE 696
Query: 209 INKLLEAKNPLNAIVHMY--------NGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ +LEAK L A+ + + + L+ Q D+LS+ + + K
Sbjct: 697 LQLILEAKYWLPALRELGSLQAFRCLHSDCWWTRSLEAQLRCCDRLSRRWQQQAHPSLKP 756
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+ +A++ LP+++ L + L ++ Y
Sbjct: 757 ILPWLLRLQSLLTSLPEPGPIAQRLQLPQDVIQRLQQWPCAIAQLTQLDTAQLPSQLYRQ 816
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKK 380
L + A+ + + ++ Q L + PL+G D+ K G PG +
Sbjct: 817 LANYDPITLLLAAAVLPRSSRRVISRYLWQWL-------PLVLPLSGHDLKKLGYRPGPQ 869
Query: 381 VGNILVHCKQEWINSSF------QLSQEDLHHLLRKL 411
IL + ++ Q+ LH L +
Sbjct: 870 FRQILEALQAAVLDGQLLAGTDDTARQQALHWLRDRY 906
>gi|197336263|ref|YP_002156965.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Vibrio
fischeri MJ11]
gi|197317753|gb|ACH67200.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Vibrio
fischeri MJ11]
Length = 475
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 18/243 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ + +VGG VRD L+ +D DIAT P+++ ++F R
Sbjct: 53 SDNALKVLYRLSNAGYDAYLVGGGVRDILLGQEPKDFDIATNATPEQIKKLFRNCRL--- 109
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R +G + + D+ R
Sbjct: 110 -IGRRFRLAHILFGRDVIEVATFRGHHKEENEKKNISAQSDEGMLLRDNVYGTVEEDAER 168
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NA+Y + + DY G+ DL+N I+ IGD R ED +R+LR RF A
Sbjct: 169 RDFTVNAMYYNIADYSIHDYANGIEDLKNGIIRLIGDPETRYREDPVRMLRAVRFAAKLD 228
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I + L+ + + R++ E KLL+ N LN + + +F+++F +
Sbjct: 229 M-TICDKTAAPIAELSPLLRDIPAARLFEESLKLLQTGNGLNTYWMLRDFNLFQQLFPVL 287
Query: 239 QEI 241
Sbjct: 288 TPF 290
>gi|325266879|ref|ZP_08133550.1| poly(A) polymerase [Kingella denitrificans ATCC 33394]
gi|324981620|gb|EGC17261.1| poly(A) polymerase [Kingella denitrificans ATCC 33394]
Length = 443
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 9/174 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ ++ +LS L++ ++ +VGGAVRD L+ + +D D+AT LP++V +F ++R
Sbjct: 32 IRNHAVLKVLSGLHRAGFEAYLVGGAVRDLLLGKTPKDFDVATNALPEQVRGVFKRSRI- 90
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + ++ + +++T R GR + D+ RRDFT N
Sbjct: 91 ---IGRRFQIVHVMVGAETIEVSTFRGGGNVKHNESGRIVRDNAYGTLAQDAFRRDFTCN 147
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
ALY D Q ++ID+ GL+D+R + + IGDA R +ED +RILR R G
Sbjct: 148 ALYYDVQNQQIIDFHNGLSDIRAKRLVMIGDAAERYVEDPVRILRAIRLSGKLG 201
>gi|237802835|ref|YP_002888029.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT]
gi|231274069|emb|CAX10863.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT]
Length = 425
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 72/354 (20%), Positives = 139/354 (39%), Gaps = 14/354 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F
Sbjct: 42 FSTHALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNC---- 97
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYA 129
I + I + ++ T RS + K + D LRRDFTIN L+
Sbjct: 98 ILVGKRFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFY 157
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D +IDY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L
Sbjct: 158 DPSAGIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYAF-TVDPKTLE 216
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-------I 241
A ++ L S R++ EI K+L + + + +F + + +
Sbjct: 217 ALQESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMAKAFSLSKTL 276
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+ + + + + R +L ++ K+S + I +
Sbjct: 277 QDQTFACLTALDTKIQKRSFCSERHFLLAILLFPIVNFNVRYKYSQYPTMTIQSIFDYIR 336
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
NF + + + ++ +++ L + + F ++L
Sbjct: 337 NFLTEFFADSFTSCSKKNFILTTLLLQMQYRLTPLNAMKKEKKSFFNRRLLRHA 390
>gi|153854755|ref|ZP_01995989.1| hypothetical protein DORLON_01987 [Dorea longicatena DSM 13814]
gi|149752662|gb|EDM62593.1| hypothetical protein DORLON_01987 [Dorea longicatena DSM 13814]
Length = 396
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 80/394 (20%), Positives = 145/394 (36%), Gaps = 48/394 (12%)
Query: 56 PDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKV-VFTRDW 113
P+ +F K T I +GTI ++ + +++TT R D + R+ K FTR+
Sbjct: 2 PEETKALFD----KTFDTGIEHGTITVLLNHEGYEVTTYRIDGKYEDSRHPKEVTFTRNL 57
Query: 114 KADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
K D LRRDFTINA+ + + ++D GG+ DL I+ +G+A R ED LRILR RF
Sbjct: 58 KEDLLRRDFTINAMAYNDKDGIVDIFGGMQDLEKHMIRCVGNARERFSEDALRILRGVRF 117
Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
A G + + + A I + + L + I Y GI K
Sbjct: 118 AAQLGFEIDEETKEGMKLLAPTLENISAERIQVELVKMLTSDRP--ELIRTAYELGITKV 175
Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKI--------DSLLRFIVLISWQDKKSILSM---- 281
+ + + + V E I D +LR +L+ K +M
Sbjct: 176 FLPEFDRMMETKQETLHHMYTVGEHTIHAMMNVRNDKILRLTMLLHDTGKPEYKTMDEDG 235
Query: 282 ------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
++ + + + + + +++ G+
Sbjct: 236 VAHFKMHALGSERIAKEVLRRLKFDNDTLHKVTRLVLNHDYRMPAVPKNVRRAMNKIGED 295
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFIL----------QVLSDIIHWKKPLFPLTGDDVVKY 373
+ +++ A +Q + +++ +TG D+++
Sbjct: 296 IFPYYMEVRRADVLAQSEYQRAEKLKNLDEVEQTYAEIIEKGQCVSLKELAVTGRDLIRA 355
Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
G+ PGK++G L I + ++E L
Sbjct: 356 GMKPGKEIGEKLNELLNLVIENPEMNTKEILLKY 389
>gi|149036852|gb|EDL91470.1| rCG56075 [Rattus norvegicus]
Length = 182
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 66/169 (39%), Positives = 92/169 (54%), Gaps = 6/169 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
L ++ L K + I GGAVRD L + QD+D ATT P + +F +
Sbjct: 11 LFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTEMKEMFQAAGIR 70
Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TI
Sbjct: 71 MINNKGEKHGTITARLHEENFEVTTLRIDVSTDGRHAEVEFTTDWQKDAERRDLTI---- 126
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
G + DY G DL+N+ ++F+G A RI EDYLRILR+F
Sbjct: 127 -SFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFSLGNRM 174
>gi|258544970|ref|ZP_05705204.1| poly(A) polymerase [Cardiobacterium hominis ATCC 15826]
gi|258519773|gb|EEV88632.1| poly(A) polymerase [Cardiobacterium hominis ATCC 15826]
Length = 444
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 103/236 (43%), Gaps = 12/236 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + IL L++ ++ +VGG +RD L+ +D DIAT P+++ IF R
Sbjct: 24 DPRALKILRQLDEAGFEAYLVGGCIRDLLLGKQPKDFDIATNARPEQIASIFRNCRL--- 80
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV------VFTRDWKADSLRRDFTIN 125
+ I + ++ T R+ + R + D +RRDFTIN
Sbjct: 81 -IGRRFRLAHIHFGRYIIEVATFRAPPEREARTDSYGSVLEDNHYGTLEDDVVRRDFTIN 139
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY D + ++ DYVG L+D+ R I+ IGD R ED +R+LR RF A
Sbjct: 140 ALYYDSKNDEIRDYVGALDDINRRIIRIIGDPVARYTEDPVRMLRAARFSAKLNMPLEAD 199
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+ + R++ E+ KL + + G+F+ +F D ++
Sbjct: 200 TEAAIVACRDNLRA-VPAARLFDEVQKLFMSGYGQTCFDVLQQHGLFEALFPDAEK 254
>gi|162449988|ref|YP_001612355.1| Poly(A) polymerase [Sorangium cellulosum 'So ce 56']
gi|161160570|emb|CAN91875.1| Poly(A) polymerase [Sorangium cellulosum 'So ce 56']
Length = 416
Score = 133 bits (333), Expect = 6e-29, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 108/238 (45%), Gaps = 13/238 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D D+ ++ L + ++ +VGG VRD L++ +D D+AT+ P+ V +F +R
Sbjct: 38 DPDVQKVVRRLVRHGFQAYLVGGCVRDLLLDRRPKDFDVATSARPEEVRELFRNSRI--- 94
Query: 72 PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTI 124
+ + ++ K ++ T R + D D+LRRDF I
Sbjct: 95 -IGRRFRLVHVLFQGGKVIEVATFRRNPKEDSDDGSELLIRSDNAFGVAHEDALRRDFRI 153
Query: 125 NALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
NAL+ D + + I D+VGG+ D+R + + IGD R ED +RILR +F G I
Sbjct: 154 NALFYDVEARQILDWVGGMEDVRRQVVHTIGDPETRFREDPIRILRALKFAGRLGF-AIT 212
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
D A + + L + + R+ EI +LL I + G+ + +V +
Sbjct: 213 PDVYDAVVYCRDALALAARPRLSEEILRLLRGGQARRTIYLAWETGVLDVLLPEVSAL 270
>gi|258623057|ref|ZP_05718070.1| Poly(A) polymerase [Vibrio mimicus VM573]
gi|258584670|gb|EEW09406.1| Poly(A) polymerase [Vibrio mimicus VM573]
Length = 457
Score = 133 bits (333), Expect = 6e-29, Method: Composition-based stats.
Identities = 75/396 (18%), Positives = 146/396 (36%), Gaps = 33/396 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R
Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R G + D+ R
Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF
Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLD 210
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I+ D L+ + + R++ E K+L+A + L M +F+++F +
Sbjct: 211 F-DIEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
E + EQ+ + +D+ +R + +M + +
Sbjct: 270 AEH--FTADHSSQTEQMLDLVLDATDIRVEEDLRINPAFMFAAMLWYPMISLADQLMESL 327
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
+ S + ++ + L + ++L ++
Sbjct: 328 SLHEFDAMTEASNRILDEVVKRIAIPRRHTTTIRDIWQLQQRLPRRSGKRAFRLL-ELSK 386
Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEW 392
++ G D ++ G G G + W
Sbjct: 387 FRA------GFDFLEMRGEIEG---GET-KQLAEWW 412
>gi|167817255|ref|ZP_02448935.1| poly(A) polymerase [Burkholderia pseudomallei 91]
Length = 485
Score = 133 bits (333), Expect = 6e-29, Method: Composition-based stats.
Identities = 81/431 (18%), Positives = 150/431 (34%), Gaps = 60/431 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 38 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 96
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 97 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDAS 153
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 154 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 213
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 214 REDPVRMLRVVRFAAKLGF-DIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 272
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 273 CLKQLRKQGLHHGLLPLLDVV--LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFATLL 330
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ I + ++ + L L
Sbjct: 331 WHDMRQRFEQYSADGEFPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKR 390
Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG---KKVGNILVHCKQEW---IN 394
+ + +L+ G D + G VG W I+
Sbjct: 391 SGRSALRLLEHQRFRA----------GYDFLLLRCESGELDPAVGQ-------WWTDFID 433
Query: 395 SSFQLSQEDLH 405
++E L
Sbjct: 434 GD-AATREALL 443
>gi|319941727|ref|ZP_08016049.1| Poly(A) polymerase [Sutterella wadsworthensis 3_1_45B]
gi|319804660|gb|EFW01527.1| Poly(A) polymerase [Sutterella wadsworthensis 3_1_45B]
Length = 484
Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 103/235 (43%), Gaps = 12/235 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
L + ++ IVGGAVRD L+ ++ +D D+AT P+ V R + I
Sbjct: 43 QAKRCCEALQRRGYRAYIVGGAVRDLLLGVAPKDFDVATDATPEEVKRAQKRA----III 98
Query: 74 SISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + +I ++ + +T R+ + GR + D+ RRDFTINAL
Sbjct: 99 GRRFRLVHVIFGQEIIECSTFRALEGAGVRKDSSGRVISDNVFGEMWEDAARRDFTINAL 158
Query: 128 YADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y D ++ DY G DL + ++ IG+ R ED +R++R R A G I+
Sbjct: 159 YYDPATEEIYDYHHGFEDLGKKRLRMIGNPEERYREDPVRMIRAVRISAKLGF-AIEPAT 217
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ K L + S R+ E KLL + + + + G+ + + + +
Sbjct: 218 ERPIARMAKLLSNVPSARLVDEALKLLTCGHAVECVSRLRKEGLAEAVLPTLNRL 272
>gi|258627266|ref|ZP_05722052.1| Poly(A) polymerase [Vibrio mimicus VM603]
gi|258580449|gb|EEW05412.1| Poly(A) polymerase [Vibrio mimicus VM603]
Length = 457
Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats.
Identities = 75/396 (18%), Positives = 146/396 (36%), Gaps = 33/396 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R
Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R G + D+ R
Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF
Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLD 210
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I+ D L+ + + R++ E K+L+A + L M +F+++F +
Sbjct: 211 F-DIEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
E + EQ+ + +D+ +R + +M + +
Sbjct: 270 AEH--FTADHSSQTEQMLDLVLDATDIRVEEDLRINPAFMFAAMLWYPMISLADQLMESL 327
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
+ S + ++ + L + ++L ++
Sbjct: 328 SLHEFDAMTEASNRILDEVVKRIAIPRRHTTTIRDIWQLQQRLPRRSGKRAFRLL-ELSK 386
Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEW 392
++ G D ++ G G G + W
Sbjct: 387 FRA------GFDFLEMRGEIEG---GET-KQLAEWW 412
>gi|307249388|ref|ZP_07531380.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
gi|306858574|gb|EFM90638.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
Length = 510
Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats.
Identities = 68/377 (18%), Positives = 143/377 (37%), Gaps = 20/377 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF +
Sbjct: 85 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQ---CRL 141
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + +++ T R+D + G + + D+ RRD
Sbjct: 142 IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRD 201
Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
F++N+LY D + +I D+ G+ DL+ + IGD R ED +R+LR RF A
Sbjct: 202 FSVNSLYYDPKHNLIFDFFDGIADLKAGKLHLIGDPVVRYQEDPVRMLRAVRFMAKLDMF 261
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D + LK + + R++ E KL ++ M G+F+ +F +
Sbjct: 262 -LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEPLFPVLTP 320
Query: 241 ISLDQLSQVIEAE--QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
++ E + D + + + ++L + + ++
Sbjct: 321 FFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLNS 380
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + E K L+ + + L + + L+ + +
Sbjct: 381 HDAMMLAANDVLAESCKAIALHRRHTSVIRDIWALQFQMTKRSGKRPQQTLEHVKFRAGF 440
Query: 359 KKPLF--PLTGDDVVKY 373
+ + G D+V+
Sbjct: 441 DLLVMRAEIEGGDLVEL 457
>gi|29840548|ref|NP_829654.1| poly(A) polymerase family protein [Chlamydophila caviae GPIC]
gi|29834898|gb|AAP05532.1| poly(A) polymerase family protein [Chlamydophila caviae GPIC]
Length = 428
Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats.
Identities = 76/391 (19%), Positives = 144/391 (36%), Gaps = 25/391 (6%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
++++ L K K+ IVGG +RD L+N + +D DI+T+ P+ + +F
Sbjct: 41 FSPHALSVVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNC---- 96
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYA 129
I + I + +++T RS + K + D LRRDFTIN L+
Sbjct: 97 ILVGKRFRLAHIRFSNQIIEVSTFRSGSADEDYLITKDNLWGTAEEDVLRRDFTINGLFY 156
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + +IDY GG++DL+NR ++ IGD R +D +R+LR + A +D L
Sbjct: 157 DPAEETIIDYTGGVSDLQNRYLRTIGDPFVRFKQDPVRMLRLLKILARASF-TVDPKTLE 215
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---ISLDQ 245
A + + L + R++ E+ K+L + + + +F + + ++
Sbjct: 216 ALQECRYELVKSAPARVFEELIKMLGSGASSEFFKLTVKYQMLEILFPYMDKAFRLNKTL 275
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
Q V + + S ++ + + + ++ +S
Sbjct: 276 EEQTFSCLDVLDKNVSS-KKYNYDRHQLMAAFLFPIVNFNVRYKHRQHPSLSLTAIFDYI 334
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN---LTHQDTCFILQVLSDIIHWKKPL 362
K F K I + + T + F + L+ I +
Sbjct: 335 KNFLGQFFADSFTSCSKKNFILIALVLQMQYRLTPLVPTKKIHFFNRKFLNHIRFSEALS 394
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
++ P L W+
Sbjct: 395 LL----EIRSLVYP-------KLDKILAAWV 414
>gi|262172326|ref|ZP_06040004.1| poly(A) polymerase [Vibrio mimicus MB-451]
gi|261893402|gb|EEY39388.1| poly(A) polymerase [Vibrio mimicus MB-451]
Length = 457
Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats.
Identities = 75/396 (18%), Positives = 146/396 (36%), Gaps = 33/396 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R
Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R G + D+ R
Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF
Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLD 210
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I+ D L+ + + R++ E K+L+A + L M +F+++F +
Sbjct: 211 F-DIEEDTAEPIEYLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
E + EQ+ + +D+ +R + +M + +
Sbjct: 270 AEH--FTADHSSQTEQMLDLVLDATDIRVEEDLRINPAFMFAAMLWYPMISLADQLMESL 327
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
+ S + ++ + L + ++L ++
Sbjct: 328 SLHEFDAMTEASNRILDEVVKRIAIPRRHTTTIRDIWQLQQRLPRRSGKRAFRLL-ELSK 386
Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEW 392
++ G D ++ G G G + W
Sbjct: 387 FRA------GFDFLEMRGEIEG---GET-KQLAEWW 412
>gi|260771220|ref|ZP_05880147.1| poly(A) polymerase [Vibrio furnissii CIP 102972]
gi|260613817|gb|EEX39009.1| poly(A) polymerase [Vibrio furnissii CIP 102972]
gi|315179174|gb|ADT86088.1| polyA polymerase [Vibrio furnissii NCTC 11218]
Length = 456
Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats.
Identities = 71/357 (19%), Positives = 137/357 (38%), Gaps = 26/357 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R
Sbjct: 37 SENALKVLYRLHGAGFEAYLVGGGVRDLLLGGKPKDFDVATNATPEQIRQLFRNCRL--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R + G + D+ RRD
Sbjct: 94 -IGRRFRLAHIMFGRDIIEVATFRGHHQENNKQIASQSEAGMLLRDNVYGTIDEDAERRD 152
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+Y + + DY GG+ D+ ++ I+ IGD R ED +R+LR RF
Sbjct: 153 FTINAMYYNIADYSIHDYAGGMEDMDDKLIRLIGDPETRYREDPVRMLRAIRFAVKLDF- 211
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+ + L+ + + R++ E K+L++ L M +F+++F +
Sbjct: 212 DIEEETAAPIEHLAPLLRDIPAARLYEESLKMLQSGYGLETYHLMREYNLFQQLFPTIAR 271
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
D S + EQ+ + +DS + + A P + F+
Sbjct: 272 HFTDDYSS--QTEQMLDLALDST--DQRMEEGKRVNPAFMFAAMLWYPMLKIADELMEFD 327
Query: 301 CN------FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ E+ K + + L L T + ++++
Sbjct: 328 HFSEYDAVMEASNRILDEVVKSIAIPRRHTATIREIWQLQLRLPRRTGKRAFRLMEL 384
>gi|327483400|gb|AEA77807.1| Poly(A) polymerase [Vibrio cholerae LMA3894-4]
Length = 457
Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats.
Identities = 77/396 (19%), Positives = 147/396 (37%), Gaps = 33/396 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R
Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R G + D+ R
Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF
Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLD 210
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I+ D + L+ + + R++ E K+L+A + L M +F+++F +
Sbjct: 211 F-DIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
E + EQ+ + +D+ +R + +M + R
Sbjct: 270 AEH--FTADHSSKTEQMLDLVLDATDIRVEEDLRINPAFMFAAMLWYPMIDLADRLMESL 327
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
N S + ++ + L + ++L ++
Sbjct: 328 NLNEFDAMTEASNRILDEVVKRIAIPRRHTTTIRDIWQLQQRLPRRSGKRAFRLL-ELNK 386
Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEW 392
++ G D ++ G G G + W
Sbjct: 387 FRA------GFDFLEMRGEIEG---GET-KQLAEWW 412
>gi|307244988|ref|ZP_07527085.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|307253941|ref|ZP_07535793.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307258396|ref|ZP_07540137.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|306854153|gb|EFM86361.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306863145|gb|EFM95087.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306867580|gb|EFM99427.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
Length = 510
Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats.
Identities = 68/377 (18%), Positives = 145/377 (38%), Gaps = 20/377 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF +
Sbjct: 85 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQ---CRL 141
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + +++ T R+D + G + + D+ RRD
Sbjct: 142 IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRD 201
Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
F++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 202 FSVNSLYYDPKHNLIFDFFDGITDLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKLDMF 261
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D + LK + + R++ E KL ++ M G+F+++F +
Sbjct: 262 -LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLFPVLTP 320
Query: 241 ISLDQLSQVIEAE--QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
++ E + D + + + ++L + + ++
Sbjct: 321 FFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLNS 380
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + E K L+ + + L + + L+ + +
Sbjct: 381 HDAMMLAANDVLAESCKAIALHRRHTSVIRDIWALQFQMAKRSGKRPQQTLEHVKFRAGF 440
Query: 359 KKPLF--PLTGDDVVKY 373
+ + G D+V+
Sbjct: 441 DLLVMRAEIEGGDLVEL 457
>gi|312883975|ref|ZP_07743692.1| polyA polymerase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368433|gb|EFP95968.1| polyA polymerase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 451
Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats.
Identities = 70/353 (19%), Positives = 136/353 (38%), Gaps = 18/353 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ + +VGG VRD L+ + +D DIAT P+++ ++F R
Sbjct: 35 SDNALKVLYRLHGAGFDAFLVGGGVRDLLLGQNPKDFDIATNATPEQIRQLFKNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R G + D+ RRD
Sbjct: 92 -IGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSQQSKDGMLLRDNVYGSIDEDAERRD 150
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NA+Y + + DY G+ DL ++ ++ IGD R ED +R+LR RF
Sbjct: 151 FTVNAMYYNIGDYSIHDYASGVEDLEDKLVRLIGDPETRYREDPVRMLRAIRFAVKLDF- 209
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+ D + L+ + + R++ E K+L++ L M G+F+++F + E
Sbjct: 210 DIEEDTAEPIERLALLLQDIPAARLYEESLKMLQSGYGLETYHLMREYGLFQQLFPTIAE 269
Query: 241 ISLDQLSQVIEAEQVFEW-KIDSLLRFIVLISWQDKKSILSMAKKFSLPREI-RYFLISF 298
D S + E D L I+ + + + I IS
Sbjct: 270 YFTDDYSSMTEQMLDLVLDSTDQRLEDGKRINPAFMFAAMLWYPLQEKAKHISEQRQISM 329
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
++ + E + + + L + + + ++++
Sbjct: 330 YDAIMEASNHVLDEQVRSIAIPRRHTATIREIWQLQIRLSRRHGKRAFRLMEL 382
>gi|167825666|ref|ZP_02457137.1| poly(A) polymerase [Burkholderia pseudomallei 9]
Length = 483
Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats.
Identities = 81/431 (18%), Positives = 150/431 (34%), Gaps = 60/431 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 36 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 94
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 95 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDAS 151
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 152 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 211
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 212 REDPVRMLRVVRFAAKLGF-DIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 270
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 271 CLKQLRKQGLHHGLLPLLDVV--LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFATLL 328
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ I + ++ + L L
Sbjct: 329 WHDMRQRFEQYSADGEFPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKR 388
Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG---KKVGNILVHCKQEW---IN 394
+ + +L+ G D + G VG W I+
Sbjct: 389 SGRSALRLLEHQRFRA----------GYDFLLLRCESGELDPAVGQ-------WWTDFID 431
Query: 395 SSFQLSQEDLH 405
++E L
Sbjct: 432 GD-AATREALL 441
>gi|206561603|ref|YP_002232368.1| putative polynucleotide adenylyltransferase [Burkholderia
cenocepacia J2315]
gi|198037645|emb|CAR53588.1| putative polynucleotide adenylyltransferase [Burkholderia
cenocepacia J2315]
Length = 516
Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats.
Identities = 69/369 (18%), Positives = 135/369 (36%), Gaps = 35/369 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 67 LISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR---------------------------SDLITDG 102
+ + + ++ +++T R + G
Sbjct: 126 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPPEAATAEPPKRLKRDELDRRTHAVDASG 182
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 183 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRFR 242
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A G I+ + + + R++ E+ KLL + + L
Sbjct: 243 EDPVRMLRVVRFAAKLGF-EIEPHTREPIHALADLINNVPAARLFDEMLKLLLSGHALAC 301
Query: 222 IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 302 LQRLRKEGLHHGLLPLLDVV--LEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATLLW 359
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
+ + + ++ + L L +
Sbjct: 360 HDMRQRFEQYTAAGEIPVPALHRAMDDVLDMQTEKLAIHKRYSADMREIWGLQLRLEKRS 419
Query: 342 HQDTCFILQ 350
+ +L+
Sbjct: 420 GRSAMRLLE 428
>gi|229512859|ref|ZP_04402326.1| poly(A) polymerase [Vibrio cholerae TMA 21]
gi|229520886|ref|ZP_04410308.1| poly(A) polymerase [Vibrio cholerae TM 11079-80]
gi|229525250|ref|ZP_04414655.1| poly(A) polymerase [Vibrio cholerae bv. albensis VL426]
gi|229530403|ref|ZP_04419791.1| poly(A) polymerase [Vibrio cholerae 12129(1)]
gi|254226863|ref|ZP_04920433.1| polyA polymerase [Vibrio cholerae V51]
gi|254291266|ref|ZP_04962061.1| polyA polymerase [Vibrio cholerae AM-19226]
gi|262190661|ref|ZP_06048894.1| poly(A) polymerase [Vibrio cholerae CT 5369-93]
gi|297580723|ref|ZP_06942649.1| polyA polymerase [Vibrio cholerae RC385]
gi|125620614|gb|EAZ48978.1| polyA polymerase [Vibrio cholerae V51]
gi|150422830|gb|EDN14782.1| polyA polymerase [Vibrio cholerae AM-19226]
gi|229332176|gb|EEN97664.1| poly(A) polymerase [Vibrio cholerae 12129(1)]
gi|229338831|gb|EEO03848.1| poly(A) polymerase [Vibrio cholerae bv. albensis VL426]
gi|229342119|gb|EEO07115.1| poly(A) polymerase [Vibrio cholerae TM 11079-80]
gi|229350108|gb|EEO15061.1| poly(A) polymerase [Vibrio cholerae TMA 21]
gi|262033445|gb|EEY51950.1| poly(A) polymerase [Vibrio cholerae CT 5369-93]
gi|297535139|gb|EFH73974.1| polyA polymerase [Vibrio cholerae RC385]
Length = 457
Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats.
Identities = 77/396 (19%), Positives = 147/396 (37%), Gaps = 33/396 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R
Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R G + D+ R
Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF
Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLD 210
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I+ D + L+ + + R++ E K+L+A + L M +F+++F +
Sbjct: 211 F-DIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
E + EQ+ + +D+ +R + +M + R
Sbjct: 270 AEH--FTADHSSKTEQMLDLVLDATDIRVEEDLRINPAFMFAAMLWYPMIDLADRLMESL 327
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
N S + ++ + L + ++L ++
Sbjct: 328 NLNEFDAMTEASNRILDEVVKRIAIPRRHTTTIRDIWQLQQRLPRRSGKRAFRLL-ELNK 386
Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEW 392
++ G D ++ G G G + W
Sbjct: 387 FRA------GFDFLEMRGEIEG---GET-KQLAEWW 412
>gi|255348775|ref|ZP_05380782.1| polyA polymerase [Chlamydia trachomatis 70]
gi|255503315|ref|ZP_05381705.1| polyA polymerase [Chlamydia trachomatis 70s]
gi|255506994|ref|ZP_05382633.1| polyA polymerase [Chlamydia trachomatis D(s)2923]
gi|289525452|emb|CBJ14929.1| polyA polymerase [Chlamydia trachomatis Sweden2]
gi|296435004|gb|ADH17182.1| polyA polymerase [Chlamydia trachomatis E/150]
gi|296438724|gb|ADH20877.1| polyA polymerase [Chlamydia trachomatis E/11023]
Length = 425
Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats.
Identities = 72/354 (20%), Positives = 141/354 (39%), Gaps = 14/354 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F
Sbjct: 42 FSTHALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNC---- 97
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYA 129
I + I + ++ T RS + K + D LRRDFTIN L+
Sbjct: 98 ILVGKRFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFY 157
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + +IDY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L
Sbjct: 158 DPSAEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYAF-TVDPKTLE 216
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-------I 241
A +++ L S R++ EI K+L + + + +F + + +
Sbjct: 217 ALQESRHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMAKAFSLSKTL 276
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+ + + + + R +L ++ K+S + I +
Sbjct: 277 QDQTFACLTALDTKIQKRSFCSERHFLLAILLFPIVNFNVRYKYSQYPTMTIQSIFDYIR 336
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
NF + + + ++ +++ L + + F ++L
Sbjct: 337 NFLTEFFADSFTSCSKKNFILTTLLLQMQYRLTPLNAMKKEKKSFFNRRLLRHA 390
>gi|119773915|ref|YP_926655.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Shewanella
amazonensis SB2B]
gi|119766415|gb|ABL98985.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Shewanella
amazonensis SB2B]
Length = 424
Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats.
Identities = 62/234 (26%), Positives = 97/234 (41%), Gaps = 17/234 (7%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
L LNK ++ +VGG VRD L+ L +D D+ T P+ + ++F R +
Sbjct: 2 LYRLNKAGYEAFLVGGGVRDLLLGLEPKDFDVVTNATPEDIKKLFRNCRL----VGRRFR 57
Query: 79 TIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLRRDFTINAL 127
I+ + ++ T R +GR + D+ RRDFT+NAL
Sbjct: 58 LAHIVFGRDVIEVATFRGHHGNEDGDKISKANAEGRLLRDNVYGSIDEDAERRDFTVNAL 117
Query: 128 YADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y D I GG DL + ++ IGD R ED +R++R RF G I+
Sbjct: 118 YYDISDYSIRSYGGGMEDLNDGVLRLIGDPETRYREDPVRMIRAVRFATKLGM-RIEEVT 176
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
K L+ + + R++ E+ KL A M +F IF + +
Sbjct: 177 AAPIRKLAPLLRDIPAARMYEEVLKLFFAGKGQANYQMMQEYQLFAPIFPLLAD 230
>gi|320155390|ref|YP_004187769.1| poly(A) polymerase [Vibrio vulnificus MO6-24/O]
gi|319930702|gb|ADV85566.1| poly(A) polymerase [Vibrio vulnificus MO6-24/O]
Length = 453
Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats.
Identities = 69/353 (19%), Positives = 132/353 (37%), Gaps = 18/353 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +L L+ + +VGG VRD L+ S +D DIAT P+++ ++F R
Sbjct: 35 SDHALKVLYRLHGAGFDAFLVGGGVRDLLLGQSPKDFDIATNATPEQLKQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWKADSLRRD 121
+ I+ ++ ++ T R +G + D+ RRD
Sbjct: 92 -IGRRFRLAHIMFGREIIEVATFRGHHQDANSQISQQSKEGMLLRDNVYGTIDEDAERRD 150
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF A
Sbjct: 151 FTINAMYYNIADYSIHDYAGGVEDLEDRLVRLIGDPETRYREDPVRMLRAIRFAAKLDF- 209
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+ D + L+ + + R++ E KLL++ + L M +F+++F +
Sbjct: 210 DIEEDTAAPIEEMAYLLRDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQMFPAISA 269
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL--PREIRYFLISF 298
+ S E + + + + +
Sbjct: 270 YFTEDYSSKAEQMLDLVLDSTDIRVEEGKRINPAYMFAAMLWYPLLELADKLMDSHNLCH 329
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
++ L + E + + + L L + ++++
Sbjct: 330 YDAVMEASNLILDEQVRSIAIPRRHTATIREIWQLQLRLPRRNGKRAFRLMEL 382
>gi|295675599|ref|YP_003604123.1| poly(A) polymerase [Burkholderia sp. CCGE1002]
gi|295435442|gb|ADG14612.1| poly(A) polymerase [Burkholderia sp. CCGE1002]
Length = 531
Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats.
Identities = 70/379 (18%), Positives = 140/379 (36%), Gaps = 35/379 (9%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R
Sbjct: 79 PTLISRNAIRVTEGLQQAGFRAFIVGGAVRDLLLGVKPKDFDVATDATPEQVQKLFRRAR 138
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLR-------------------------SDLITDG 102
+ + + ++ + +T R + G
Sbjct: 139 I----IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAAPPKRLKRDELDRRTHAVDASG 194
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 195 RVLRDNVWGEQHEDATRRDFTINAMYYDPATQTVLDYHNGMADMRTRLLRMIGDPATRYR 254
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A +ID K + + + R++ E+ KL+ + + L
Sbjct: 255 EDPVRMLRVVRFAAKLDF-DIDDATRAPIEKMADLINNVPAARLFDEMLKLMLSGHALAC 313
Query: 222 IVHMYNGGIFKEIFLD----VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+ + G+ + +++ + ++ + + + L +
Sbjct: 314 LKRLRQEGLHHGLLPLLDVVLEQPTGEKFISLALSNTDARVLAGKPVSPGFLFATLLWHD 373
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ +KF E + I K F ++ +L++
Sbjct: 374 VQQRWQKFEAEGEYPVPALHRAMDEVLDMQTEKLAIHKRFSADMREIWGLQLRLEKRSGR 433
Query: 338 NNLTHQDTCFILQVLSDII 356
+ L + ++
Sbjct: 434 SALKLLEHQRFRAGYDFLL 452
>gi|166154621|ref|YP_001654739.1| polyA polymerase [Chlamydia trachomatis 434/Bu]
gi|166155496|ref|YP_001653751.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|301335888|ref|ZP_07224132.1| polyA polymerase [Chlamydia trachomatis L2tet1]
gi|165930609|emb|CAP04106.1| polyA polymerase [Chlamydia trachomatis 434/Bu]
gi|165931484|emb|CAP07060.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis]
Length = 425
Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats.
Identities = 72/354 (20%), Positives = 141/354 (39%), Gaps = 14/354 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F
Sbjct: 42 FSTHALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNC---- 97
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYA 129
I + I + ++ T RS + K + D LRRDFTIN L+
Sbjct: 98 ILVGKRFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFY 157
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + +IDY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L
Sbjct: 158 DPSAEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYAF-TVDPKTLE 216
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-------I 241
A +++ L S R++ EI K+L + + + +F + + +
Sbjct: 217 ALQESRHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMAKAFSLSKTL 276
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+ + + + + R +L ++ K+S + I +
Sbjct: 277 QDQTFACLTALDTKIQKRSFCSERHFLLAILLFPIVNFNVRYKYSQYPTMTIQSIFDYIR 336
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
NF + + + ++ +++ L + + F ++L
Sbjct: 337 NFLTEFFADSFTSCSKKNFILTTLLLQMQYRLTPLNAMKKEKKSFFNRRLLRHA 390
>gi|262393336|ref|YP_003285190.1| poly(A) polymerase [Vibrio sp. Ex25]
gi|262336930|gb|ACY50725.1| poly(A) polymerase [Vibrio sp. Ex25]
Length = 453
Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats.
Identities = 66/354 (18%), Positives = 125/354 (35%), Gaps = 19/354 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R
Sbjct: 35 SDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSLRR 120
+ I+ + ++ T R G + D+ RR
Sbjct: 92 -IGRRFRLAHIMFGRDIIEVATFRGHHQEQKNKSISQQSKEGMLLRDNVYGTIDEDAERR 150
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTIN++Y + + DY G+ DL +R I+ IGD R ED +R+LR RF
Sbjct: 151 DFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVRFAVKLDF 210
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+I+ D L + S R++ E KLL++ + L + +F+++F +
Sbjct: 211 -DIEEDTAAPIEHMAPLLGDIPSARLFEESLKLLQSGHGLETYHLLREYNLFQQLFPTIA 269
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS--LPREIRYFLIS 297
+ S E + + + +
Sbjct: 270 AHFTEDYSSYTEQMLDLVLDSTDMRIEDGKRINPAFMFAAMLWYPLCAKADELMEERNLG 329
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
++ + + E + + + L L + ++++
Sbjct: 330 HYDAIMEASNIILDEQVRTIAIPRRHTATIREIWQLQLRLPRRNGKRAFRLMEL 383
>gi|170691343|ref|ZP_02882508.1| poly(A) polymerase [Burkholderia graminis C4D1M]
gi|170143548|gb|EDT11711.1| poly(A) polymerase [Burkholderia graminis C4D1M]
Length = 533
Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats.
Identities = 69/379 (18%), Positives = 139/379 (36%), Gaps = 35/379 (9%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R
Sbjct: 80 PTLISRNAIRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRAR 139
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLR-------------------------SDLITDG 102
+ + + ++ + +T R + G
Sbjct: 140 I----IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAAPPRRLKRDELDRRTHAVDASG 195
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 196 RVLRDNVWGEQHEDATRRDFTINAMYYDPATETVLDYHNGMADVRARLLRMIGDPATRYR 255
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A I+ K + + + R++ E+ KL+ + + L
Sbjct: 256 EDPVRMLRVVRFAAKLDF-EIEDATRDPIAKMADLINNVPAARLFDEMLKLMLSGHALAC 314
Query: 222 IVHMYNGGIFKEIFLD----VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+ + G+ + +++ + ++ + + + L +
Sbjct: 315 LKRLRQEGLHHGLLPLLDVVLEQPTGEKFITLALNNTDARVRAGKPVSPGFLFATLLWHD 374
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ +KF E + I K F ++ +L++
Sbjct: 375 VQQRWQKFEANGEYPVPALHRAMDEVLDMQTEKLAIHKRFSSDMREIWGLQLRLEKRSGR 434
Query: 338 NNLTHQDTCFILQVLSDII 356
+ L + ++
Sbjct: 435 SALKLLEHQRFRAGYDFLL 453
>gi|15615444|ref|NP_243747.1| hypothetical protein BH2881 [Bacillus halodurans C-125]
gi|10175503|dbj|BAB06600.1| BH2881 [Bacillus halodurans C-125]
Length = 427
Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats.
Identities = 69/404 (17%), Positives = 136/404 (33%), Gaps = 22/404 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L + + K +VGG VRD L + D+D+ + + +
Sbjct: 30 LKKLGEMAAKLRMNLFLVGGTVRDMLRGVPGGDLDLVIEGDALAFSQNVANVLGGKVKHH 89
Query: 75 ISYGTIKII-CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ T + DI + R++ + D RRDF+INA+
Sbjct: 90 EPFATATWVGAENLKLDIVSARAESYAKPGALPTIRHSHITDDLARRDFSINAMAIHLHP 149
Query: 134 ----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+++D G +DL N I+ + ++D R+LR RF + + + +A
Sbjct: 150 ASYGQLVDPFHGRHDLTNGLIRILH--SQSFIDDPTRLLRGVRFVSRFNYRFEQKTANLA 207
Query: 190 SIKAKKGL---KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+S ERI E+ L +P+++ + + +++ + S
Sbjct: 208 LATQPALTNALANVSPERIVHELKLLCHETDPVSSFSKLEDLHVWQALLGLTFSSSSATH 267
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ EQ E V + K+ L ++ + + N
Sbjct: 268 LSRLQEEQNGEPLHWFQAIATVGFLEDNWKASLVPFAITAMEQRFLQNIEDIQKRLTNMT 327
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
S + K Y ++ + F AL + L + LT
Sbjct: 328 RFSTDYLHKQLYQVPEEPLR-----FYALSSGEEMQKVLDLYLHQRKQL------QPLLT 376
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G D+++ G+ P L+ + E + + + Q+ L R+
Sbjct: 377 GHDLMELGMKPSPLFKECLLLHECEQLKGTIENKQDAL-QFARE 419
>gi|71908795|ref|YP_286382.1| Poly(A) polymerase, PcnB [Dechloromonas aromatica RCB]
gi|71848416|gb|AAZ47912.1| Poly(A) polymerase, PcnB [Dechloromonas aromatica RCB]
Length = 447
Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 102/221 (46%), Gaps = 12/221 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
S + L K+ +VGGAVRD L+ +D DIAT P+ V R F ++R
Sbjct: 38 SSGSRRVCETLQGHGFKAYVVGGAVRDLLIGAEPKDFDIATDATPEEVRRAFRRSRI--- 94
Query: 72 PTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + ++ + ++TT R GR D+ RRDFT N
Sbjct: 95 -IGRRFQIVHVMMGSETLEVTTFRGMLDEKTKTDEHGRVLHDNVFGSHADDAARRDFTAN 153
Query: 126 ALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY D + VIDY G+ DL+ +T++ IG+ R ED +R+LR R A G ID
Sbjct: 154 ALYYDPATEAVIDYHHGVGDLKQKTLRMIGEPRARYREDPVRMLRAVRLAAKLGLM-IDP 212
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
+ + L+ + + R++ E+ KLL + + + I +
Sbjct: 213 EAKKPIREMADLLENVPAARLFDEMLKLLTSGHSVKCITQL 253
>gi|147673822|ref|YP_001216090.1| polyA polymerase [Vibrio cholerae O395]
gi|262169899|ref|ZP_06037589.1| poly(A) polymerase [Vibrio cholerae RC27]
gi|146315705|gb|ABQ20244.1| polyA polymerase [Vibrio cholerae O395]
gi|227012420|gb|ACP08630.1| polyA polymerase [Vibrio cholerae O395]
gi|262021633|gb|EEY40344.1| poly(A) polymerase [Vibrio cholerae RC27]
Length = 457
Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats.
Identities = 76/400 (19%), Positives = 143/400 (35%), Gaps = 41/400 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R
Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R G + D+ R
Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNMYGTIDEDAER 150
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF
Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLD 210
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I+ D + L+ + + R++ E K+L+A + L M +F+++F +
Sbjct: 211 F-DIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + EQ+ + +D+ + +
Sbjct: 270 AEH--FTADHSSKTEQMLDLVLDAT-----------DIRVEEDLRINPAFMFAAMLWYPM 316
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ ++++ +K + T +D + Q L
Sbjct: 317 IDLADRLMESLDLNEFDAITEASNRILDEVVKRIAIPRRHTTTVRDIWQLQQRLPRRSGK 376
Query: 359 KKPLFP-LT----GDDVVKY-GIPPGKKVGNILVHCKQEW 392
+ L G D ++ G G G + W
Sbjct: 377 RAFRLLELNKFRAGFDFLEMRGEIEG---GET-KQLAEWW 412
>gi|167904126|ref|ZP_02491331.1| poly(A) polymerase [Burkholderia pseudomallei NCTC 13177]
Length = 482
Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats.
Identities = 81/431 (18%), Positives = 150/431 (34%), Gaps = 60/431 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 35 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 93
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 94 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDAS 150
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 151 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 210
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 211 REDPVRMLRVVRFAAKLGF-DIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 269
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 270 CLKQLRKQGLHHGLLPLLDVV--LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFATLL 327
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ I + ++ + L L
Sbjct: 328 WHDMRQRFEQYSADGEFPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKR 387
Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG---KKVGNILVHCKQEW---IN 394
+ + +L+ G D + G VG W I+
Sbjct: 388 SGRSALRLLEHQRFRA----------GYDFLLLRCESGELDPAVGQ-------WWTDFID 430
Query: 395 SSFQLSQEDLH 405
++E L
Sbjct: 431 GD-AATREALL 440
>gi|269966964|ref|ZP_06181036.1| Poly(A) polymerase [Vibrio alginolyticus 40B]
gi|269828447|gb|EEZ82709.1| Poly(A) polymerase [Vibrio alginolyticus 40B]
Length = 455
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 72/356 (20%), Positives = 130/356 (36%), Gaps = 23/356 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R
Sbjct: 37 SDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRNCRL--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSLRR 120
+ I+ + ++ T R G + D+ RR
Sbjct: 94 -IGRRFRLAHIMFGRDIIEVATFRGHHQEQKNKSISQQSKEGMLLRDNVYGTIDEDAERR 152
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTIN++Y + + DY G+ DL +R I+ IGD R ED +R+LR RF
Sbjct: 153 DFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVRFAVKLDF 212
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+I+ D L + S R++ E KLL++ + L + +F+++F +
Sbjct: 213 -DIEEDTAAPIEHMAPLLGDIPSARLFEESLKLLQSGHGLETYHLLREYNLFQQLFPTIA 271
Query: 240 EISLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ S EQ+ + +DS +R +M +
Sbjct: 272 AHFTEDYSS--HTEQMLDLVLDSTDMRIEDGKRINPAFMFAAMLWYPLCAKADELMEERN 329
Query: 299 FNCNFNQKTLS---IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
S + E + + + L L + ++++
Sbjct: 330 LGHYDAIMEASNIILDEQVRTIAIPRRHTATIREIWQLQLRLPRRNGKRAFRLMEL 385
>gi|323524827|ref|YP_004226980.1| poly(A) polymerase [Burkholderia sp. CCGE1001]
gi|323381829|gb|ADX53920.1| poly(A) polymerase [Burkholderia sp. CCGE1001]
Length = 532
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 70/379 (18%), Positives = 140/379 (36%), Gaps = 35/379 (9%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R
Sbjct: 79 PTLISRNAIRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRAR 138
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLR-------------------------SDLITDG 102
+ + + ++ + +T R + G
Sbjct: 139 I----IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAAPPRRLKRDELDRRTHAVDASG 194
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 195 RVLRDNVWGEQHEDATRRDFTINAMYYDPATETVLDYHNGMADVRARLLRMIGDPATRYR 254
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A ID K + + + R++ E+ KL+ + + L
Sbjct: 255 EDPVRMLRVVRFAAKLDF-EIDDATRAPIAKMADLINNVPAARLFDEMLKLMLSGHALAC 313
Query: 222 IVHMYNGGIFKEIFLD----VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+ + G+ + +++ + ++ ++ + + L +
Sbjct: 314 LKRLRQEGLHHGLLPLLDVVLEQPTGEKFITLVLNNTDARVRAGKPVSPGFLFATLLWHD 373
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ +KF E + I K F ++ +L++
Sbjct: 374 VQQRWQKFEANGEYPVPALHRAMDEVLDMQTEKLAIHKRFSSDMREIWGLQLRLEKRSGR 433
Query: 338 NNLTHQDTCFILQVLSDII 356
+ L + ++
Sbjct: 434 SALKLLEHQRFRAGYDFLL 452
>gi|76789141|ref|YP_328227.1| polyA polymerase [Chlamydia trachomatis A/HAR-13]
gi|76167671|gb|AAX50679.1| polyA polymerase [Chlamydia trachomatis A/HAR-13]
Length = 425
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 71/354 (20%), Positives = 140/354 (39%), Gaps = 14/354 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F
Sbjct: 42 FSTHALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNC---- 97
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYA 129
I + I + ++ T RS + K + D LRRDFTIN L+
Sbjct: 98 ILVGKRFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFY 157
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + +IDY GG+ DL++R ++ IGD R +D +R+LR + + Y +D L
Sbjct: 158 DPSAEIIIDYTGGVEDLKSRYLRTIGDPFLRFKQDPVRMLRLLKILSRYAF-TVDPKTLE 216
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-------I 241
A ++ L S R++ EI K+L + + + +F + + +
Sbjct: 217 ALQESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMAKAFSLSKTL 276
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+ + + + + R +L ++ K+S + I +
Sbjct: 277 QDQTFACLTALDTKIQKRSFCSERHFLLAILLFPIVNFNVRYKYSQYPTMTIQSIFDYIR 336
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
NF + + + ++ +++ L + + F ++L
Sbjct: 337 NFLTEFFADSFTSCSKKNFILTTLLLQMQYRLTPLNAMKKEKKSFFNRRLLRHA 390
>gi|165975632|ref|YP_001651225.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|165875733|gb|ABY68781.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
Length = 510
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 68/377 (18%), Positives = 145/377 (38%), Gaps = 20/377 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF +
Sbjct: 85 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQ---CRL 141
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + +++ T R+D + G + + D+ RRD
Sbjct: 142 IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRD 201
Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
F++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 202 FSVNSLYYDPKHNLIFDFFDGITDLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKLDMF 261
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D + LK + + R++ E KL ++ M G+F+++F +
Sbjct: 262 -LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLFPVLTP 320
Query: 241 ISLDQLSQVIEAE--QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
++ E + D + + + ++L + + ++
Sbjct: 321 FFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLNS 380
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + E K L+ + + L + + L+ + +
Sbjct: 381 HDAMMLAANDVLAESCKAIALHRRHTSVIRDIWALQFQMTKRSGKRPQQTLEHVKFRAGF 440
Query: 359 KKPLF--PLTGDDVVKY 373
+ + G D+V+
Sbjct: 441 DLLVMRAEIEGGDLVEL 457
>gi|153803792|ref|ZP_01958378.1| polyA polymerase [Vibrio cholerae MZO-3]
gi|124120672|gb|EAY39415.1| polyA polymerase [Vibrio cholerae MZO-3]
Length = 351
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 64/297 (21%), Positives = 123/297 (41%), Gaps = 25/297 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R
Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R G + D+ R
Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF
Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLD 210
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I+ D + L+ + + R++ E K+L+A + L M +F+++F +
Sbjct: 211 F-DIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269
Query: 239 QEI-------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
E +Q+ ++ + D + + + ++ +A +
Sbjct: 270 AEHFTSDHSSKTEQMLDLVLDATDIRVEEDLRINPAFMFAAMLWYPMIDLADRLMES 326
>gi|15640615|ref|NP_230244.1| polyA polymerase [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121730139|ref|ZP_01682536.1| polyA polymerase [Vibrio cholerae V52]
gi|227080777|ref|YP_002809328.1| polyA polymerase [Vibrio cholerae M66-2]
gi|229509186|ref|ZP_04398671.1| poly(A) polymerase [Vibrio cholerae B33]
gi|229519604|ref|ZP_04409047.1| poly(A) polymerase [Vibrio cholerae RC9]
gi|229608891|ref|YP_002879539.1| poly(A) polymerase [Vibrio cholerae MJ-1236]
gi|254850828|ref|ZP_05240178.1| polyA polymerase [Vibrio cholerae MO10]
gi|255744185|ref|ZP_05418138.1| poly(A) polymerase [Vibrio cholera CIRS 101]
gi|262155757|ref|ZP_06028881.1| poly(A) polymerase [Vibrio cholerae INDRE 91/1]
gi|298500714|ref|ZP_07010517.1| polyA polymerase [Vibrio cholerae MAK 757]
gi|9655025|gb|AAF93761.1| polyA polymerase [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121628115|gb|EAX60652.1| polyA polymerase [Vibrio cholerae V52]
gi|227008665|gb|ACP04877.1| polyA polymerase [Vibrio cholerae M66-2]
gi|229344293|gb|EEO09268.1| poly(A) polymerase [Vibrio cholerae RC9]
gi|229353758|gb|EEO18694.1| poly(A) polymerase [Vibrio cholerae B33]
gi|229371546|gb|ACQ61969.1| poly(A) polymerase [Vibrio cholerae MJ-1236]
gi|254846533|gb|EET24947.1| polyA polymerase [Vibrio cholerae MO10]
gi|255738125|gb|EET93517.1| poly(A) polymerase [Vibrio cholera CIRS 101]
gi|262030468|gb|EEY49108.1| poly(A) polymerase [Vibrio cholerae INDRE 91/1]
gi|297540495|gb|EFH76553.1| polyA polymerase [Vibrio cholerae MAK 757]
Length = 457
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 76/400 (19%), Positives = 143/400 (35%), Gaps = 41/400 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R
Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R G + D+ R
Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF
Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLD 210
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I+ D + L+ + + R++ E K+L+A + L M +F+++F +
Sbjct: 211 F-DIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + EQ+ + +D+ + +
Sbjct: 270 AEH--FTADHSSKTEQMLDLVLDAT-----------DIRVEEDLRINPAFMFAAMLWYPM 316
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ ++++ +K + T +D + Q L
Sbjct: 317 IDLADRLMESLDLNEFDAITEASNRILDEVVKRIAIPRRHTTTVRDIWQLQQRLPRRSGK 376
Query: 359 KKPLFP-LT----GDDVVKY-GIPPGKKVGNILVHCKQEW 392
+ L G D ++ G G G + W
Sbjct: 377 RAFRLLELNKFRAGFDFLEMRGEIEG---GET-KQLAEWW 412
>gi|238898700|ref|YP_002924381.1| poly(A) polymerase I [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229466459|gb|ACQ68233.1| poly(A) polymerase I [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 439
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 72/406 (17%), Positives = 131/406 (32%), Gaps = 56/406 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DI T PD+V +F R
Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRELFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL------------- 118
+ I+ ++ T R ++ + L
Sbjct: 74 -IGRRFRLAHIMFGTDTIEVATFRGHHGLKSANQNTHSSQRAQNGMLLRDNIFGSIEEDA 132
Query: 119 -RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFT+N+LY + DY GGL D++ I+ IGD R ED +R+LR RF A
Sbjct: 133 HRRDFTVNSLYYGIADFTLRDYTGGLKDIKQGLIRLIGDPEIRYPEDPVRMLRAVRFSAK 192
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I S+ + LK + R++ E KLL++ + + + +F +F
Sbjct: 193 LDM-AISSETGKPIPRFAFLLKEVPGARLFEESLKLLQSGHGYKTYLKLCEYQLFPLLFP 251
Query: 237 DV------------QEISLDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDK-------- 275
+ ++I + L E + L + + ++
Sbjct: 252 LIARNLAQKSDSFMEKIIIQALKNTDERLKNKLGIHPAFLFSAMFWYPFVERTQNIKKEH 311
Query: 276 ----------KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
+ + + I + + K + +
Sbjct: 312 GKLTYIETFSMAADDILNEICRSFAIPKRFTMVMKDIWLFQIRFSHSQKPRAFQLTEHPK 371
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
L L + I Q ++ +++
Sbjct: 372 FRIAYDLLVLRAEVENQHNLKKIAQWWAEFQAGTVLQ-----KELM 412
>gi|313244235|emb|CBY15063.1| unnamed protein product [Oikopleura dioica]
Length = 246
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 69/180 (38%), Positives = 103/180 (57%), Gaps = 1/180 (0%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ L + + + + + I GGA RD L+ DID+ATT PD ++ + K +
Sbjct: 12 LLNPALWKLKRIFDDHKKELRIAGGAPRDLLLGKIPSDIDLATTATPDEMIEMLKKEKID 71
Query: 70 VIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
I I +GT+ + ++ITTLR D +TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 72 TINANGIKHGTVTAHIDEVNYEITTLRIDKVTDGRHAEVQFTTDWRIDANRRDLTINSMF 131
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
G+VIDY G DL+ R I+F+G RI ED+LRILR+FRF++ +K
Sbjct: 132 LTFDGEVIDYFNGQEDLKARKIQFVGHPEERIQEDFLRILRYFRFYSRISDKEDAHCKEH 191
>gi|148653930|ref|YP_001281023.1| poly(A) polymerase [Psychrobacter sp. PRwf-1]
gi|148573014|gb|ABQ95073.1| poly(A) polymerase [Psychrobacter sp. PRwf-1]
Length = 719
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 70/352 (19%), Positives = 134/352 (38%), Gaps = 17/352 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+I +++ LNKG + IVGG VRD+L+ LS +D D T P V +F K +
Sbjct: 20 IIEVIATLNKGGFDAYIVGGGVRDTLLGLSPKDFDAVTDARPHEVKDLFGK---RCRIIG 76
Query: 75 ISYGTIKIICRKKYFDITTLRSDL------ITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + + ++ T R+ +DG + D + D RRDF+INA+Y
Sbjct: 77 RRFQLAHVYSGRDMIEVATFRAPPTGDAHATSDGMIVRDNVWGDIEQDFARRDFSINAMY 136
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+G V D+ L+D++N+T++ +G A RI ED +R+LR RF A G + +
Sbjct: 137 YQPLKGVVHDFCNALDDIKNKTLRLLGHAPLRIEEDPVRLLRALRFKAKLGFEFDEELSN 196
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE---IFLDVQEISLD 244
L +S R++ E K+ + + ++ G + ++
Sbjct: 197 QFHDDNWALLDQVSPHRLYDESQKMFTGGYLVPLLPLLFEYGAIRHLIIYPPQAPTRLVN 256
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
Q++ + I+ + L+ ++ L KF +
Sbjct: 257 QVAINTDKRIALGKSINPAFFYAALL----WENYLHQLAKFKKKNMPFHDAQLQAASKVI 312
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ I + + + + + K+ + ++
Sbjct: 313 DRQRVKTAIPRFAEQFIRDIWVMQPKLANPRVKQIPQLAEHPRFRAAFDFLL 364
>gi|163855127|ref|YP_001629425.1| poly(A) polymerase [Bordetella petrii DSM 12804]
gi|163258855|emb|CAP41154.1| poly(A) polymerase [Bordetella petrii]
Length = 451
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 12/221 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I + +L + + IVGGAVRD ++ L +D D+AT P+++ +F + R
Sbjct: 37 SRHAIKVCEVLRQHGYSAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + ++ ++ + +T R + GR + + D+ RRDFT+N
Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASQDQETDEHGRILRDNVFGTHEEDAARRDFTMN 152
Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY D +VIDY G+ DL+ R ++ IGD R ED +R+LR RF A +ID
Sbjct: 153 ALYYDPHTEEVIDYHNGVQDLKKRQVRIIGDPAQRYREDPVRMLRAVRFAAKLN-GSIDP 211
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
++ + + R++ E+ KLL + ++ + +
Sbjct: 212 ATRKPIGTMAPLIENVPASRLFDEMLKLLTCGHAMDCLRQL 252
>gi|153819896|ref|ZP_01972563.1| polyA polymerase [Vibrio cholerae NCTC 8457]
gi|126509566|gb|EAZ72160.1| polyA polymerase [Vibrio cholerae NCTC 8457]
Length = 457
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 76/400 (19%), Positives = 143/400 (35%), Gaps = 41/400 (10%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R
Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R G + D+ R
Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF
Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLD 210
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I+ D + L+ + + R++ E K+L+A + L M +F+++F +
Sbjct: 211 F-DIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAAHGLETYHLMRQYNLFQQLFPTI 269
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + EQ+ + +D+ + +
Sbjct: 270 AEH--FTADHSSKTEQMLDLVLDAT-----------DIRVEEDLRINPAFMFAAMLWYPM 316
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ ++++ +K + T +D + Q L
Sbjct: 317 IDLADRLMESLDLNEFDAITEASNRILDEVVKRIAIPRRHTTTVRDIWQLQQRLPRRSGK 376
Query: 359 KKPLFP-LT----GDDVVKY-GIPPGKKVGNILVHCKQEW 392
+ L G D ++ G G G + W
Sbjct: 377 RAFRLLELNKFRAGFDFLEMRGEIEG---GET-KQLAEWW 412
>gi|238022809|ref|ZP_04603235.1| hypothetical protein GCWU000324_02721 [Kingella oralis ATCC 51147]
gi|237866012|gb|EEP67148.1| hypothetical protein GCWU000324_02721 [Kingella oralis ATCC 51147]
Length = 594
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 10/236 (4%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ + +L L++ ++ +VGGAVRD L+ + +D D+AT+ P++V R+F ++R
Sbjct: 183 RNQAALRVLESLHRAGFEAYLVGGAVRDLLLGIEPKDFDVATSATPEQVHRLFRRSRI-- 240
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINA 126
+ + ++ + +++T RS GR + + D++RRDFT NA
Sbjct: 241 --IGRRFQIVHVMQGSETIEVSTFRSGGRVMQNASGRIMRDNAYGSLEQDAMRRDFTCNA 298
Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
LY D +V+D+ GG D+ R + IGDA R ED +R+LR R G +++
Sbjct: 299 LYYDVAAQQVLDFHGGWEDVAVRRLVMIGDAAERYQEDPVRMLRAARLSGKLGF-AVEAA 357
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ L+ R++ E+ K+L + N + + G+ + + + +
Sbjct: 358 TAAPIGEMGLLLRHEPVARLFDELLKILLSGNAAGCLAALRRLGLTEAVHPLLSAM 413
>gi|126207664|ref|YP_001052889.1| putative poly(A) polymerase [Actinobacillus pleuropneumoniae L20]
gi|126096456|gb|ABN73284.1| putative poly(A) polymerase [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 510
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 68/377 (18%), Positives = 145/377 (38%), Gaps = 20/377 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF +
Sbjct: 85 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQ---CRL 141
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + +++ T R+D + G + + D+ RRD
Sbjct: 142 IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRD 201
Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
F++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 202 FSVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKLDMF 261
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D + LK + + R++ E KL ++ M G+F+++F +
Sbjct: 262 -LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLFPVLTP 320
Query: 241 ISLDQLSQVIEAE--QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
++ E + D + + + ++L + + ++
Sbjct: 321 FFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLNS 380
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + E K L+ + + L + + L+ + +
Sbjct: 381 HDAMMLAANDVLAESCKAIALHRRHTSVIRDIWALQFQMTKRSGKRPQQTLEHVKFRAGF 440
Query: 359 KKPLF--PLTGDDVVKY 373
+ + G D+V+
Sbjct: 441 DLLVMRAEIEGGDLVEL 457
>gi|167847153|ref|ZP_02472661.1| poly(A) polymerase [Burkholderia pseudomallei B7210]
Length = 488
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 81/431 (18%), Positives = 150/431 (34%), Gaps = 60/431 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 41 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 99
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 100 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDAS 156
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 157 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 216
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 217 REDPVRMLRVVRFAAKLGF-DIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 275
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 276 CLKQLRKQGLHHGLLPLLDVV--LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFATLL 333
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ I + ++ + L L
Sbjct: 334 WHDMRQRFEQYSADGEFPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKR 393
Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG---KKVGNILVHCKQEW---IN 394
+ + +L+ G D + G VG W I+
Sbjct: 394 SGRSALRLLEHQRFRA----------GYDFLLLRCESGELDPAVGQ-------WWTDFID 436
Query: 395 SSFQLSQEDLH 405
++E L
Sbjct: 437 GD-AATREALL 446
>gi|172039120|ref|YP_001805621.1| poly(A) polymerase/tRNA nucleotidyltransferase family protein
[Cyanothece sp. ATCC 51142]
gi|171700574|gb|ACB53555.1| poly(A) polymerase/tRNA nucleotidyltransferase family protein
[Cyanothece sp. ATCC 51142]
Length = 905
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 88/446 (19%), Positives = 159/446 (35%), Gaps = 58/446 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS-----VQDIDIATTIL--------PDRV 59
L I IVGGAVRD L+ + +QDID+ +
Sbjct: 472 KLLEEIAQEAEHKGWHLYIVGGAVRDLLLTRNYEKVLLQDIDLVVDGFHRSADVGAGVEL 531
Query: 60 MR-IFSKTRYKVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRD 112
I K + + T ++ K + DI T R++ V
Sbjct: 532 ASTIQKKYSNCRLSVHGEFQTAALLWHKDPEFGSLWLDIATSRTEFYPYPAANPEVEASS 591
Query: 113 WKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168
+ D RRDFTINAL ++G+++D+ GGL DL+ + ++ + + +ED RI
Sbjct: 592 IRQDLYRRDFTINALAVRLTPPREGELLDFFGGLLDLKAKEVRVLHA--NSFIEDPTRIY 649
Query: 169 RFFRFFAHYGEK---------------NIDSDGLVASIKAKKGLKILSSERIW----SEI 209
R RF + I + + A L +E + +
Sbjct: 650 RAVRFAVRLKFEIEPQTEAYIRYAIESGIYEKLRLKNHVAPALTTRLKAELKYILEANYW 709
Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS-LLRFIV 268
L+ + L+A+ ++N + + L + ++ W I +L +
Sbjct: 710 KPALQLLSELDALKCLHNQVSLDDKIWWQIRCASRWLKYLDPDNKIGHWLIRLEILISQI 769
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
I + + + K SL R +S +K E K Y Y +
Sbjct: 770 NIKERKQLAQNLQLPKESLERIEIVNTLSSEIQENLKKYDKTSEKYKQLYRYKLPDL--- 826
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
+ +A++ N + + + W K PL G+D+ + G PG K +L
Sbjct: 827 --MLVAVNCNKKIRRI------IWQYLTQWSKVESPLNGNDLKRMGYKPGPKYKMVLDRL 878
Query: 389 KQEWINSSFQLSQEDLHHLLRKLIAS 414
++ Q S+E+ ++R+++
Sbjct: 879 LSLTLDGEIQ-SKEEAEIIVREMMKE 903
>gi|303250925|ref|ZP_07337116.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|303252000|ref|ZP_07338171.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|307247163|ref|ZP_07529214.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|307251707|ref|ZP_07533611.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307260634|ref|ZP_07542326.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|307262766|ref|ZP_07544393.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|302649430|gb|EFL79615.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|302650231|gb|EFL80396.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306856301|gb|EFM88453.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|306860793|gb|EFM92802.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306869711|gb|EFN01496.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306871911|gb|EFN03628.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 510
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 68/377 (18%), Positives = 145/377 (38%), Gaps = 20/377 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF +
Sbjct: 85 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQ---CRL 141
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + +++ T R+D + G + + D+ RRD
Sbjct: 142 IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRD 201
Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
F++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 202 FSVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKLDMF 261
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D + LK + + R++ E KL ++ M G+F+++F +
Sbjct: 262 -LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLFPVLTP 320
Query: 241 ISLDQLSQVIEAE--QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
++ E + D + + + ++L + + ++
Sbjct: 321 FFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLNS 380
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + E K L+ + + L + + L+ + +
Sbjct: 381 HDAMMLAANDVLAESCKAIALHRRHTSVIRDIWALQFQMTKRSGKRPQQTLEHVKFRAGF 440
Query: 359 KKPLF--PLTGDDVVKY 373
+ + G D+V+
Sbjct: 441 DLLVMRAEIEGGDLVEL 457
>gi|149910512|ref|ZP_01899152.1| polyA polymerase [Moritella sp. PE36]
gi|149806472|gb|EDM66444.1| polyA polymerase [Moritella sp. PE36]
Length = 488
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 19/245 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + +L L+K ++ +VGG VRD + +D DIAT P+++ ++F R
Sbjct: 66 LISENALKVLYRLHKSGYQAYLVGGGVRDIFIGQEPKDFDIATNAEPEQIKKLFHNCRL- 124
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKAD 116
+ I+ + ++ T R + + G + + D
Sbjct: 125 ---VGRRFRLAHILFGRDMIEVATFRGHHVEEQEQNQQTSKQSDGGMLLRDNVYGNISED 181
Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RRDFT+NALY + V D+ GGL DL+++ ++ IGD R ED +R+LR RF A
Sbjct: 182 AERRDFTVNALYYNIADRAVYDFAGGLADLQSKQLRLIGDPETRYREDPVRMLRAVRFSA 241
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ I + + L+ + + R++ E KL + L M G+F+ +F
Sbjct: 242 KLDMQ-ISPEAKAPIKQLANLLQSIPAARLFEETLKLFLNGHGLATYKLMKEHGLFQPLF 300
Query: 236 LDVQE 240
V +
Sbjct: 301 PLVSK 305
>gi|83719048|ref|YP_441861.1| polyA polymerase [Burkholderia thailandensis E264]
gi|257138030|ref|ZP_05586292.1| polyA polymerase [Burkholderia thailandensis E264]
gi|83652873|gb|ABC36936.1| polyA polymerase [Burkholderia thailandensis E264]
Length = 514
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 88/432 (20%), Positives = 157/432 (36%), Gaps = 62/432 (14%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 67 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 126 ---IGRRFQIVHVQFGQELIEVSTFRALVDTPQEPPADAAPAKRLKRDELDRRTHAVDAS 182
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 183 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 242
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 243 REDPVRMLRVVRFAAKLGF-DIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 301
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + L Q + V ++ R +
Sbjct: 302 CLKQLRKQGLHHGLLPLLDVV----LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFAT 357
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ R +Y F + + + L K A ++ L L
Sbjct: 358 LLWHDMRQRFEQYTADGEFPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLR-L 416
Query: 341 THQDTCFILQVLSDIIHWKKPLFPL----TGDDVVKYGIPPGKKVGNILVHCKQEW---I 393
+ L++L F L +G+ + PG VG W I
Sbjct: 417 EKRSGRSALRLLEHQRFRAGYDFLLLRCESGE------LDPG--VGQ-------WWTDFI 461
Query: 394 NSSFQLSQEDLH 405
+ ++E L
Sbjct: 462 DGD-AATREALL 472
>gi|326796836|ref|YP_004314656.1| poly(A) polymerase [Marinomonas mediterranea MMB-1]
gi|326547600|gb|ADZ92820.1| poly(A) polymerase [Marinomonas mediterranea MMB-1]
Length = 479
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 29/254 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN + +VGG +RD L+ +S +D D+ T P+ V +FS +R
Sbjct: 41 SPNALKVLHRLNGAGFDAYLVGGCIRDHLIGMSPKDFDVVTNATPEEVNDLFSNSRL--- 97
Query: 72 PTSISYGTIKIICRKKYFDITTLR-----------------------SDLITDGRYAKVV 108
+ + + ++ +++T R + + G +
Sbjct: 98 -IGRRFRIVHVTFGREIIEVSTFRANTANNPPPIPKHDENKSLKNKDTARSSHGIILRDN 156
Query: 109 FTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167
D+ RRDFT NALY + + D+ GL D+ N+ I+ IGD R ED +R+
Sbjct: 157 VWGSIDEDAQRRDFTFNALYFNIADRSIHDFCNGLQDIENKQIRIIGDPRERYKEDPVRM 216
Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227
LR RF G +I+ + + L + R++ E+ KLL + + +
Sbjct: 217 LRAIRFAGKLGF-DIEPETAAPIKEMAHLLDHIPPARLFEEVLKLLGSGQGVTTFYLLRE 275
Query: 228 GGIFKEIFLDVQEI 241
G+FK +F D I
Sbjct: 276 YGLFKYLFPDTDAI 289
>gi|153825676|ref|ZP_01978343.1| polyA polymerase [Vibrio cholerae MZO-2]
gi|149740613|gb|EDM54722.1| polyA polymerase [Vibrio cholerae MZO-2]
Length = 457
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 77/396 (19%), Positives = 147/396 (37%), Gaps = 33/396 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R
Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R G + D+ R
Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF
Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLD 210
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I+ D + L+ + + R++ E K+L+A + L M +F+++F +
Sbjct: 211 F-DIEEDTAAPIEQLALLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
E + EQ+ + +D+ +R + +M + R
Sbjct: 270 AEH--FTADHSSKTEQMLDLVLDATDIRVEEDLRINPAFMFAAMLWYPMIDLADRLMESL 327
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
N S + ++ + L + ++L ++
Sbjct: 328 NLNEFDAMTEASNRILDEVVKRIAIPRRHTTTIRDIWQLQQRLPRRSGKRAFRLL-ELNK 386
Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEW 392
++ G D ++ G G G + W
Sbjct: 387 FRA------GFDFLEMRGEIEG---GET-KQLAEWW 412
>gi|167580696|ref|ZP_02373570.1| polyA polymerase [Burkholderia thailandensis TXDOH]
Length = 514
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 88/432 (20%), Positives = 157/432 (36%), Gaps = 62/432 (14%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 67 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 126 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDAS 182
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 183 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 242
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 243 REDPVRMLRVVRFAAKLGF-DIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 301
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + L Q + V ++ R +
Sbjct: 302 CLKQLRKQGLHHGLLPLLDVV----LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFAT 357
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ R +Y F + + + L K A ++ L L
Sbjct: 358 LLWHDMRQRFEQYTADGEFPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLR-L 416
Query: 341 THQDTCFILQVLSDIIHWKKPLFPL----TGDDVVKYGIPPGKKVGNILVHCKQEW---I 393
+ L++L F L +G+ + PG VG W I
Sbjct: 417 EKRSGRSALRLLEHQRFRAGYDFLLLRCESGE------LDPG--VGQ-------WWTDFI 461
Query: 394 NSSFQLSQEDLH 405
+ ++E L
Sbjct: 462 DGD-AATREALL 472
>gi|37680945|ref|NP_935554.1| polyA polymerase [Vibrio vulnificus YJ016]
gi|37199695|dbj|BAC95525.1| polyA polymerase [Vibrio vulnificus YJ016]
Length = 463
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 69/353 (19%), Positives = 132/353 (37%), Gaps = 18/353 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +L L+ + +VGG VRD L+ S +D DIAT P+++ ++F R
Sbjct: 45 SDHALKVLYRLHGAGFDAFLVGGGVRDLLLGQSPKDFDIATNATPEQLKQLFRNCRL--- 101
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWKADSLRRD 121
+ I+ ++ ++ T R +G + D+ RRD
Sbjct: 102 -IGRRFRLAHIMFGREIIEVATFRGHHQDANSQISQQSKEGMLLRDNVYGTIDEDAERRD 160
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF A
Sbjct: 161 FTINAMYYNIADYSIHDYAGGVEDLEDRLVRLIGDPETRYREDPVRMLRAIRFAAKLDF- 219
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+ D + L+ + + R++ E KLL++ + L M +F+++F +
Sbjct: 220 DIEEDTAAPIEEMAHLLRDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQMFPAISA 279
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL--PREIRYFLISF 298
+ S E + + + + +
Sbjct: 280 YFTEDYSSKAEQMLDLVLDSTDIRVEEGKRINPAYMFAAMLWYPLLELADKLMDSHNLCH 339
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
++ L + E + + + L L + ++++
Sbjct: 340 YDAVMEASNLILDEQVRSIAIPRRHTATIREIWQLQLRLPRRNGKRAFRLMEL 392
>gi|307256202|ref|ZP_07537989.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306865383|gb|EFM97279.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
Length = 510
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 68/377 (18%), Positives = 145/377 (38%), Gaps = 20/377 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF +
Sbjct: 85 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQ---CRL 141
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + +++ T R+D + G + + D+ RRD
Sbjct: 142 IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRD 201
Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
F++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 202 FSVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKLDMF 261
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D + LK + + R++ E KL ++ M G+F+++F +
Sbjct: 262 -LDKASDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLFPVLTP 320
Query: 241 ISLDQLSQVIEAE--QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
++ E + D + + + ++L + + ++
Sbjct: 321 FFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLNS 380
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + E K L+ + + L + + L+ + +
Sbjct: 381 HDAMMLAANDVLAESCKAIALHRRHTSVIRDIWALQFQMAKRSGKRPQQTLEHVKFRAGF 440
Query: 359 KKPLF--PLTGDDVVKY 373
+ + G D+V+
Sbjct: 441 DLLVMRAEIEGGDLVEL 457
>gi|167618800|ref|ZP_02387431.1| polyA polymerase [Burkholderia thailandensis Bt4]
Length = 488
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 88/432 (20%), Positives = 157/432 (36%), Gaps = 62/432 (14%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 41 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 99
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 100 ---IGRRFQIVHVQFGQELIEVSTFRALVDTPQEPPADAAPAKRLKRDELDRRTHAVDAS 156
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 157 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 216
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 217 REDPVRMLRVVRFAAKLGF-DIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 275
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + L Q + V ++ R +
Sbjct: 276 CLKQLRKQGLHHGLLPLLDVV----LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFAT 331
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ R +Y F + + + L K A ++ L L
Sbjct: 332 LLWHDMRQRFEQYTADGEFPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLR-L 390
Query: 341 THQDTCFILQVLSDIIHWKKPLFPL----TGDDVVKYGIPPGKKVGNILVHCKQEW---I 393
+ L++L F L +G+ + PG VG W I
Sbjct: 391 EKRSGRSALRLLEHQRFRAGYDFLLLRCESGE------LDPG--VGQ-------WWTDFI 435
Query: 394 NSSFQLSQEDLH 405
+ ++E L
Sbjct: 436 DGD-AATREALL 446
>gi|167740036|ref|ZP_02412810.1| poly(A) polymerase [Burkholderia pseudomallei 14]
Length = 470
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 81/431 (18%), Positives = 150/431 (34%), Gaps = 60/431 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 23 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 81
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 82 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDAS 138
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 139 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 198
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 199 REDPVRMLRVVRFAAKLGF-DIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 257
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 258 CLKQLRKQGLHHGLLPLLDVV--LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFATLL 315
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ I + ++ + L L
Sbjct: 316 WHDMRQRFEQYSADGEFPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKR 375
Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG---KKVGNILVHCKQEW---IN 394
+ + +L+ G D + G VG W I+
Sbjct: 376 SGRSALRLLEHQRFRA----------GYDFLLLRCESGELDPAVGQ-------WWTDFID 418
Query: 395 SSFQLSQEDLH 405
++E L
Sbjct: 419 GD-AATREALL 428
>gi|227824836|ref|ZP_03989668.1| metal-dependent phosphohydrolase [Acidaminococcus sp. D21]
gi|226905335|gb|EEH91253.1| metal-dependent phosphohydrolase [Acidaminococcus sp. D21]
Length = 484
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 61/264 (23%), Positives = 108/264 (40%), Gaps = 4/264 (1%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP-T 73
+I +L L K ++ +VGGAVRD L D DI T+ P+ R+ V+
Sbjct: 9 VITVLELFRKHGFEAYVVGGAVRDLLCGKHPHDYDIVTSARPEETRRLCKGAGLSVVENL 68
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINALYADQ 131
++G + ++ + ++ R ++ + V + + + D RRDFT+NA+ D
Sbjct: 69 GENFGVLVLLVEGRAVEVAAYRKEVYGTDAHRPSGVAYCQTLEEDLARRDFTVNAMAMDL 128
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G + D G DL + ++ +G R ED LR+ R RF A G
Sbjct: 129 AGNLTDPYSGQRDLEHHVLRVVGSPSDRFSEDALRMFRACRFVAQLGFLPEAGILPAIKA 188
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+A + K LS R+ +E++KLL A + M G+ +E + + + + E
Sbjct: 189 EAPRA-KGLSLSRVKAELHKLLRAPYAGQGMNLMVQSGLAGMSCRIKKEGTYESVPILPE 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDK 275
+ + +
Sbjct: 248 LLDLVGVPQNPRFHPFDVWGHIWH 271
>gi|329943132|ref|ZP_08291906.1| poly(A) polymerase family protein [Chlamydophila psittaci Cal10]
gi|332287715|ref|YP_004422616.1| poly(A) polymerase [Chlamydophila psittaci 6BC]
gi|313848289|emb|CBY17290.1| putative poly(A) polymerase [Chlamydophila psittaci RD1]
gi|325507270|gb|ADZ18908.1| poly(A) polymerase [Chlamydophila psittaci 6BC]
gi|328814679|gb|EGF84669.1| poly(A) polymerase family protein [Chlamydophila psittaci Cal10]
Length = 428
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 79/407 (19%), Positives = 146/407 (35%), Gaps = 27/407 (6%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
++++ L K K+ IVGG +RD L+N + +D DI+T+ P+ + +F
Sbjct: 41 FSPHALSVVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNC---- 96
Query: 71 IPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I + I + +++T R D K + D LRRDFTIN L+
Sbjct: 97 ILVGKRFRLAHIRFSNQIIEVSTFRSGSADEDCLITKDNLWGTAEEDVLRRDFTINGLFY 156
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + +IDY GG++DL NR ++ IGD R +D +R+LR + A +D L
Sbjct: 157 DPTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILARA-HFTVDPKTLE 215
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A + + L S R++ E+ K+L + I + +F + + +
Sbjct: 216 ALQECRYELIKSSQARVFEELIKMLGSGVSSQFFKLTAKYQILEILFPYMDKAFRLNKTL 275
Query: 249 VIEAEQVFEWKIDSLL--RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + ++L + + + + +Y +S + K
Sbjct: 276 EDQTFACLDILDRNILNKKHNYDRHQLMAIFLFPIVNFNVRYKHRQYPSLSLTSVFDYIK 335
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN--LTHQDTCFILQVLSDIIHWKKPLFP 364
F K I I + + + F + + + + + L
Sbjct: 336 NFLGKFFADSFTSCSKKNFILTALILQMQYRLTPLVPTKKIHFFNRKFLNHVRFSEALSL 395
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
L ++ P L WI ++L
Sbjct: 396 L---EIRSLVYP-------KLDKILDAWI------RHYQALQFKKEL 426
>gi|148262375|ref|YP_001229081.1| poly(A) polymerase [Geobacter uraniireducens Rf4]
gi|146395875|gb|ABQ24508.1| poly(A) polymerase [Geobacter uraniireducens Rf4]
Length = 454
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 57/268 (21%), Positives = 101/268 (37%), Gaps = 37/268 (13%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ +W + + +L L + +VGG VRD L+ +D DI T P ++ R+F
Sbjct: 16 ISRRWL-SPNAVKVLYRLKDNGFTAYLVGGGVRDLLLGREPKDFDIVTDATPGQIKRMFR 74
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLR----------------SDLITDGRYAKVV 108
R + + + ++ T R ++ G +
Sbjct: 75 NCRL----IGRRFRLAHLHFHDEIIEVATFRSASQDEPCAEEQGPAPGEITEPGARMRPP 130
Query: 109 F--------------TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFI 153
+ D++RRDFT+NAL + +IDYVGG+ DL ++ I
Sbjct: 131 RLLKSEDGMVLRDNIFGTPEEDAIRRDFTVNALCYNIDDFSIIDYVGGMEDLNRGVVRTI 190
Query: 154 GDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213
GD R ED +R++R RF A G ++ + + + R++ E+ KL
Sbjct: 191 GDPLVRFTEDPVRMIRAVRFAAMLGF-EVEKATWQTILDLSATITKAAPPRLYEEVLKLF 249
Query: 214 EAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ G+F +F +
Sbjct: 250 LMGAGEKTYQLLRQSGLFAALFPHFNDW 277
>gi|328914968|gb|AEB55801.1| poly(A) polymerase family protein [Chlamydophila psittaci 6BC]
Length = 414
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 79/407 (19%), Positives = 146/407 (35%), Gaps = 27/407 (6%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
++++ L K K+ IVGG +RD L+N + +D DI+T+ P+ + +F
Sbjct: 27 FSPHALSVVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNC---- 82
Query: 71 IPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I + I + +++T R D K + D LRRDFTIN L+
Sbjct: 83 ILVGKRFRLAHIRFSNQIIEVSTFRSGSADEDCLITKDNLWGTAEEDVLRRDFTINGLFY 142
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + +IDY GG++DL NR ++ IGD R +D +R+LR + A +D L
Sbjct: 143 DPTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILARA-HFTVDPKTLE 201
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A + + L S R++ E+ K+L + I + +F + + +
Sbjct: 202 ALQECRYELIKSSQARVFEELIKMLGSGVSSQFFKLTAKYQILEILFPYMDKAFRLNKTL 261
Query: 249 VIEAEQVFEWKIDSLL--RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + ++L + + + + +Y +S + K
Sbjct: 262 EDQTFACLDILDRNILNKKHNYDRHQLMAIFLFPIVNFNVRYKHRQYPSLSLTSVFDYIK 321
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN--LTHQDTCFILQVLSDIIHWKKPLFP 364
F K I I + + + F + + + + + L
Sbjct: 322 NFLGKFFADSFTSCSKKNFILTALILQMQYRLTPLVPTKKIHFFNRKFLNHVRFSEALSL 381
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
L ++ P L WI ++L
Sbjct: 382 L---EIRSLVYP-------KLDKILDAWI------RHYQALQFKKEL 412
>gi|53728854|ref|ZP_00134674.2| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
Length = 492
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 68/377 (18%), Positives = 145/377 (38%), Gaps = 20/377 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF +
Sbjct: 85 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQ---CRL 141
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + +++ T R+D + G + + D+ RRD
Sbjct: 142 IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRD 201
Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
F++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 202 FSVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKLDMF 261
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D + LK + + R++ E KL ++ M G+F+++F +
Sbjct: 262 -LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLFPVLTP 320
Query: 241 ISLDQLSQVIEAE--QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
++ E + D + + + ++L + + ++
Sbjct: 321 FFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLNS 380
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + E K L+ + + L + + L+ + +
Sbjct: 381 HDAMMLAANDVLAESCKAIALHRRHTSVIRDIWALQFQMTKRSGKRPQQTLEHVKFRAGF 440
Query: 359 KKPLF--PLTGDDVVKY 373
+ + G D+V+
Sbjct: 441 DLLVMRAEIEGGDLVEL 457
>gi|323491995|ref|ZP_08097160.1| poly(A) polymerase [Vibrio brasiliensis LMG 20546]
gi|323313724|gb|EGA66823.1| poly(A) polymerase [Vibrio brasiliensis LMG 20546]
Length = 455
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 70/355 (19%), Positives = 136/355 (38%), Gaps = 22/355 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L++ +D DIAT P+++ ++F R
Sbjct: 37 SDNALKVLYRLHGAGFEAYLVGGGVRDLLLSQQPKDFDIATNATPEQIRQLFKNCRL--- 93
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R G + D+ RRD
Sbjct: 94 -IGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSQQSKEGMLLRDNVYGTIDEDAERRD 152
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NA+Y + + DY GG+ DL ++ I+ IGD R ED +R+LR RF
Sbjct: 153 FTVNAMYYNIGDYSIHDYAGGIEDLEDKLIRLIGDPDTRYREDPVRMLRAIRFAVKLDF- 211
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+ D + L+ + + R++ E K+L++ + L M +F+++F + E
Sbjct: 212 DIEEDTAAPIEELATLLQEIPAARLYEESLKMLQSGHGLETYHLMREYNLFQQLFPTIAE 271
Query: 241 ISLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ S EQ+ + +DS R +M + +
Sbjct: 272 FFTEDYSS--PTEQMLDLVLDSTDQRIEEGKRINPAFMFAAMLWYPLQEKAKQLMEKRKL 329
Query: 300 NCNFNQKTLSIP---EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ S + + + + L L + ++++
Sbjct: 330 SFYDAIMEASNYVLDDQVRTIAIPRRHTATIREIWQLQLRMPRRNGKRAFRLMEL 384
>gi|261212292|ref|ZP_05926578.1| poly(A) polymerase [Vibrio sp. RC341]
gi|260838900|gb|EEX65551.1| poly(A) polymerase [Vibrio sp. RC341]
Length = 457
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/297 (21%), Positives = 123/297 (41%), Gaps = 25/297 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R
Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R G + D+ R
Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF
Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLD 210
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I+ D L+ + + R++ E K+L+A + L M +F+++F +
Sbjct: 211 F-DIEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269
Query: 239 QEI-------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
E +Q+ ++ + D + + + ++++A +
Sbjct: 270 AEHFTADHSSQTEQMLDLVLDATDIRVEEDLRINPAFMFAAMLWYPMITLADQLMES 326
>gi|53725780|ref|YP_103879.1| polyA polymerase [Burkholderia mallei ATCC 23344]
gi|67642145|ref|ZP_00440906.1| polyA polymerase [Burkholderia mallei GB8 horse 4]
gi|121598893|ref|YP_991856.1| polyA polymerase [Burkholderia mallei SAVP1]
gi|124383907|ref|YP_001027077.1| polyA polymerase [Burkholderia mallei NCTC 10229]
gi|126449512|ref|YP_001081728.1| poly(A) polymerase [Burkholderia mallei NCTC 10247]
gi|166998831|ref|ZP_02264683.1| poly(A) polymerase [Burkholderia mallei PRL-20]
gi|254178813|ref|ZP_04885467.1| poly(A) polymerase [Burkholderia mallei ATCC 10399]
gi|254202588|ref|ZP_04908951.1| poly(A) polymerase [Burkholderia mallei FMH]
gi|254207926|ref|ZP_04914276.1| poly(A) polymerase [Burkholderia mallei JHU]
gi|254355932|ref|ZP_04972210.1| poly(A) polymerase [Burkholderia mallei 2002721280]
gi|52429203|gb|AAU49796.1| polyA polymerase [Burkholderia mallei ATCC 23344]
gi|121227703|gb|ABM50221.1| polyA polymerase [Burkholderia mallei SAVP1]
gi|124291927|gb|ABN01196.1| polyA polymerase [Burkholderia mallei NCTC 10229]
gi|126242382|gb|ABO05475.1| poly(A) polymerase [Burkholderia mallei NCTC 10247]
gi|147746835|gb|EDK53912.1| poly(A) polymerase [Burkholderia mallei FMH]
gi|147751820|gb|EDK58887.1| poly(A) polymerase [Burkholderia mallei JHU]
gi|148024907|gb|EDK83085.1| poly(A) polymerase [Burkholderia mallei 2002721280]
gi|160694727|gb|EDP84735.1| poly(A) polymerase [Burkholderia mallei ATCC 10399]
gi|238523237|gb|EEP86677.1| polyA polymerase [Burkholderia mallei GB8 horse 4]
gi|243064916|gb|EES47102.1| poly(A) polymerase [Burkholderia mallei PRL-20]
Length = 515
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 81/431 (18%), Positives = 150/431 (34%), Gaps = 60/431 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 68 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 126
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 127 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDAS 183
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 184 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 243
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 244 REDPVRMLRVVRFAAKLGF-DIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 302
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 303 CLKQLRKQGLHHGLLPLLDVV--LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFATLL 360
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ I + ++ + L L
Sbjct: 361 WHDMRQRFEQYSADGEFPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKR 420
Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG---KKVGNILVHCKQEW---IN 394
+ + +L+ G D + G VG W I+
Sbjct: 421 SGRSALRLLEHQRFRA----------GYDFLLLRCESGELDPAVGQ-------WWTDFID 463
Query: 395 SSFQLSQEDLH 405
++E L
Sbjct: 464 GD-AATREALL 473
>gi|134280312|ref|ZP_01767023.1| poly(A) polymerase [Burkholderia pseudomallei 305]
gi|134248319|gb|EBA48402.1| poly(A) polymerase [Burkholderia pseudomallei 305]
Length = 515
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 81/431 (18%), Positives = 150/431 (34%), Gaps = 60/431 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 68 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 126
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 127 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDAS 183
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 184 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 243
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 244 REDPVRMLRVVRFAAKLGF-DIEKKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 302
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 303 CLKQLRKQGLHHGLLPLLDVV--LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFATLL 360
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ I + ++ + L L
Sbjct: 361 WHDMRQRFEQYSADGEFPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKR 420
Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG---KKVGNILVHCKQEW---IN 394
+ + +L+ G D + G VG W I+
Sbjct: 421 SGRSALRLLEHQRFRA----------GYDFLLLRCESGELDPAVGQ-------WWTDFID 463
Query: 395 SSFQLSQEDLH 405
++E L
Sbjct: 464 GD-AATREALL 473
>gi|194246633|ref|YP_002004272.1| CCA-adding enzyme (tRNA adenylyl-/cytidylyl-transferase) (tRNA
CCA-pyrophosphorylase) [Candidatus Phytoplasma mali]
gi|193806990|emb|CAP18425.1| CCA-adding enzyme (tRNA adenylyl-/cytidylyl-transferase) (tRNA
CCA-pyrophosphorylase) [Candidatus Phytoplasma mali]
Length = 387
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 105/404 (25%), Positives = 182/404 (45%), Gaps = 29/404 (7%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+IL +L + ++ IVGGAVRD +NL DIDI T L +M+IF K+ +
Sbjct: 9 ANDILKILQQNGFEAFIVGGAVRDYYLNLPFVDIDIITNALTLDLMKIF-----KINSNN 63
Query: 75 ISYGTIKIICRKKYFDITTLR-SDLITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132
I +G+ + + FDITT R + + R+ K++FT D K D LRRDFTIN+L D +
Sbjct: 64 IKHGSCNVCFKNSQFDITTYRIEEKYKNHRHPTKIIFTNDVKKDLLRRDFTINSLLMDDK 123
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+IDY+GGL+D++N IK I D + ED +RILR F A I+ + A K
Sbjct: 124 KNIIDYLGGLSDIKNSIIKTIKDPEEKFQEDSVRILRTCYFQAKL-CFEIEINTKKALKK 182
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
LK +S +RI E K++ K+ +++ + I + Q I+ +++ +
Sbjct: 183 QSYLLKKISKDRILQEFIKIISQKHFYKSLITIKETNIIDFLKGLSQGINFCIENKLKKI 242
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ + + +L M F+ ++ + + +
Sbjct: 243 NKDIFFSLSLILN-------------KKMFNYFNFSKKDQ----KLYQTVEFLFNKKKLD 285
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
IK + YG ++ + KI Q I ++I K ++ +++K
Sbjct: 286 IKWSLFKYGLEICLLTNKINYLFKKEKNETQKIKII---YKNLIIKKNSDLKISSIEILK 342
Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
I PG + N+ + ++ S+++L + +RK+ S
Sbjct: 343 IMQISPGLWLNNLKQQIIKLVLDEKIINSKKNLLNYVRKIKKRS 386
>gi|329896232|ref|ZP_08271410.1| Poly(A) polymerase [gamma proteobacterium IMCC3088]
gi|328921903|gb|EGG29270.1| Poly(A) polymerase [gamma proteobacterium IMCC3088]
Length = 424
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 20/252 (7%)
Query: 1 MVSIVQHKWFHDS---DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57
M +I+ + + +++ LN ++ +VGGA+RD L+ + +D D+AT P+
Sbjct: 2 MPTIIDRNFDINKLHHSAVSVALRLNDKGYEAYVVGGAIRDMLLGKTPKDFDVATNATPE 61
Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR------ 111
+V +F +R + + + + ++TT R R
Sbjct: 62 QVHALFRGSRI----VGRRFQIVHVRMGRDIIEVTTFRGHHSESDNKNTAKQGRSGVLLR 117
Query: 112 -----DWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165
+ D++RRD T+NALY D + VIDY GL D+ R +K IGD R ED +
Sbjct: 118 DNVFGTLEQDAIRRDLTVNALYYDPVEDTVIDYTEGLRDIAARRLKIIGDPETRYREDPV 177
Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
R+LR RF A G +IDS A L + + R++ E K A + +
Sbjct: 178 RMLRVLRFQAKLGF-DIDSATNQALNDCAPLLAQIPAARLFDEFLKGFMAGHAKPFSEIL 236
Query: 226 YNGGIFKEIFLD 237
+++E+F D
Sbjct: 237 LQTPVWQELFPD 248
>gi|327392774|dbj|BAK10196.1| poly(A) polymerase PcnB [Pantoea ananatis AJ13355]
Length = 443
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 20/242 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T P+++ ++F R
Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTNATPEQMRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------------TDGRYAKVVFTRDWKADS 117
+ ++ + ++ T R G + + D+
Sbjct: 74 -VGRRFRLAHVMFGPEVIEVATFRGHHQIEETSDDHNNSQRAQSGMLLRDNIFGSIEDDA 132
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRD TIN+LY V DYVGGLNDL+ I+ IGD R ED +R+LR RF A
Sbjct: 133 QRRDLTINSLYYSVADFSVRDYVGGLNDLQQGIIRLIGDPETRYREDPVRMLRVARFAAK 192
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I + + L+ + + R++ E KLL+A + + + +F+ +F
Sbjct: 193 LNM-RIAPETAEPIPRLASLLRDVPAARLFEESLKLLQAGYGYSTWLKLCEYQLFQPLFP 251
Query: 237 DV 238
+
Sbjct: 252 TL 253
>gi|53720430|ref|YP_109416.1| putative polynucleotide adenylyltransferase [Burkholderia
pseudomallei K96243]
gi|76810345|ref|YP_334685.1| polyA polymerase [Burkholderia pseudomallei 1710b]
gi|126442154|ref|YP_001060282.1| poly(A) polymerase [Burkholderia pseudomallei 668]
gi|126452950|ref|YP_001067541.1| poly(A) polymerase [Burkholderia pseudomallei 1106a]
gi|217420727|ref|ZP_03452232.1| poly(A) polymerase [Burkholderia pseudomallei 576]
gi|226194299|ref|ZP_03789898.1| poly(A) polymerase [Burkholderia pseudomallei Pakistan 9]
gi|237813672|ref|YP_002898123.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia pseudomallei MSHR346]
gi|242316927|ref|ZP_04815943.1| poly(A) polymerase [Burkholderia pseudomallei 1106b]
gi|254180767|ref|ZP_04887365.1| poly(A) polymerase [Burkholderia pseudomallei 1655]
gi|254191602|ref|ZP_04898105.1| poly(A) polymerase [Burkholderia pseudomallei Pasteur 52237]
gi|254194852|ref|ZP_04901282.1| poly(A) polymerase [Burkholderia pseudomallei S13]
gi|254258221|ref|ZP_04949275.1| poly(A) polymerase [Burkholderia pseudomallei 1710a]
gi|254299144|ref|ZP_04966594.1| poly(A) polymerase [Burkholderia pseudomallei 406e]
gi|52210844|emb|CAH36831.1| putative polynucleotide adenylyltransferase [Burkholderia
pseudomallei K96243]
gi|76579798|gb|ABA49273.1| polyA polymerase [Burkholderia pseudomallei 1710b]
gi|126221647|gb|ABN85153.1| poly(A) polymerase [Burkholderia pseudomallei 668]
gi|126226592|gb|ABN90132.1| poly(A) polymerase [Burkholderia pseudomallei 1106a]
gi|157809255|gb|EDO86425.1| poly(A) polymerase [Burkholderia pseudomallei 406e]
gi|157939273|gb|EDO94943.1| poly(A) polymerase [Burkholderia pseudomallei Pasteur 52237]
gi|169651601|gb|EDS84294.1| poly(A) polymerase [Burkholderia pseudomallei S13]
gi|184211306|gb|EDU08349.1| poly(A) polymerase [Burkholderia pseudomallei 1655]
gi|217396139|gb|EEC36156.1| poly(A) polymerase [Burkholderia pseudomallei 576]
gi|225933764|gb|EEH29752.1| poly(A) polymerase [Burkholderia pseudomallei Pakistan 9]
gi|237503094|gb|ACQ95412.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia pseudomallei MSHR346]
gi|242140166|gb|EES26568.1| poly(A) polymerase [Burkholderia pseudomallei 1106b]
gi|254216910|gb|EET06294.1| poly(A) polymerase [Burkholderia pseudomallei 1710a]
Length = 515
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 81/431 (18%), Positives = 150/431 (34%), Gaps = 60/431 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 68 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 126
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 127 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDAS 183
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 184 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 243
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 244 REDPVRMLRVVRFAAKLGF-DIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 302
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 303 CLKQLRKQGLHHGLLPLLDVV--LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFATLL 360
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ I + ++ + L L
Sbjct: 361 WHDMRQRFEQYSADGEFPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKR 420
Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG---KKVGNILVHCKQEW---IN 394
+ + +L+ G D + G VG W I+
Sbjct: 421 SGRSALRLLEHQRFRA----------GYDFLLLRCESGELDPAVGQ-------WWTDFID 463
Query: 395 SSFQLSQEDLH 405
++E L
Sbjct: 464 GD-AATREALL 473
>gi|121533605|ref|ZP_01665432.1| Polynucleotide adenylyltransferase [Thermosinus carboxydivorans
Nor1]
gi|121307596|gb|EAX48511.1| Polynucleotide adenylyltransferase [Thermosinus carboxydivorans
Nor1]
Length = 302
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 76/288 (26%), Positives = 122/288 (42%), Gaps = 10/288 (3%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP- 72
+ IL+ L + I GGAVRD + V D DIAT+ P+ V I ++ ++V+
Sbjct: 8 AVQLILTALGANGYAAYIAGGAVRDLVAGRPVNDYDIATSARPEAVREIAARQGWQVVDK 67
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRY--AKVVFTRDWKADSLRRDFTINALYAD 130
+YG + ++ ++ T R + + + A+V + D RRDFT+NA+ D
Sbjct: 68 LGTNYGVVMVVVDGTGVEVATFRGERYGEDSHRPAEVWYADTITDDLSRRDFTVNAMAMD 127
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G +ID GG DL R I+ +GD + R ED LR+LR RF A G ID L A
Sbjct: 128 VAGNIIDPFGGRRDLAARLIRTVGDPNRRFGEDALRMLRACRFAAQLGF-AIDDVTLAAI 186
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG-----GIFKEIFLDVQEIS-LD 244
+ LS ER+ E++KLL P + + + + Q ++ L
Sbjct: 187 PANLGRMAGLSLERVRLELDKLLLGDYPHLGLAALVATGLAGASCRVKEKGEYQAVAILP 246
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
+L+ ++ Q + D + R +
Sbjct: 247 ELNHLVGLPQNPAYHAWDGWWQHFGDGAPDTARFDAALGGAFFSRHWQ 294
>gi|254447201|ref|ZP_05060668.1| poly(A) polymerase [gamma proteobacterium HTCC5015]
gi|198263340|gb|EDY87618.1| poly(A) polymerase [gamma proteobacterium HTCC5015]
Length = 434
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 17/234 (7%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++NI++ LN+ ++ +VGG VRD L+ L +D D+AT+ PD V +F R
Sbjct: 28 VLNIVARLNEAGHEAYLVGGCVRDLLIGLRPKDFDVATSATPDEVKALFRNCRL----VG 83
Query: 75 ISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRRDFT 123
+ I+ + + ++ T R+ GR + D+ RRDF+
Sbjct: 84 RRFRLAHILLGRDFIEVATFRAGQESAGKKQAVAHSDSGRILSDNVYGSLEQDAFRRDFS 143
Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NALY D + + I DYVG + D+ R ++ IGD R ED +R+LR RF A G +I
Sbjct: 144 VNALYFDVRDESIVDYVGAMADIEARQLRLIGDPDTRYREDPVRMLRAVRFAAKLGF-SI 202
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ + L+ + R++ E+ KLL++ + + ++ ++ + + +
Sbjct: 203 EPHTEAPIRELSDHLEDIPPARLFDEVIKLLQSGHGVASLDGLWQHDLLRYLLP 256
>gi|167586239|ref|ZP_02378627.1| poly(A) polymerase [Burkholderia ubonensis Bu]
Length = 460
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/367 (18%), Positives = 136/367 (37%), Gaps = 33/367 (8%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 18 LISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 76
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-------------------------SDLITDGRY 104
+ + + ++ +++T R + GR
Sbjct: 77 ---IGRRFQIVHVQFGQELIEVSTFRALVDPPPAEAEPPKRLKRDELDRRTHAVDASGRV 133
Query: 105 AKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILED 163
+ + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R ED
Sbjct: 134 LRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRYRED 193
Query: 164 YLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223
+R+LR RF A G +I+ + + + R++ E+ KLL + + L +
Sbjct: 194 PVRMLRVVRFAAKLGF-DIELHTREPINALADLINNVPAARLFDEMLKLLLSGHALACLK 252
Query: 224 HMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK 283
+ G+ + + + + Q + + D+ +R +S + L
Sbjct: 253 QLRGEGLHHGLLPLLDVV--LEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATLLWHD 310
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
+ + + ++ + L L + +
Sbjct: 311 MRQRFEQYTADGEFPVPALHRAMDDVLDMQTEKLAIHKRYSADMREIWGLQLRLEKRSGR 370
Query: 344 DTCFILQ 350
+L+
Sbjct: 371 SALRLLE 377
>gi|221214419|ref|ZP_03587390.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD1]
gi|221165676|gb|EED98151.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD1]
Length = 512
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/369 (18%), Positives = 135/369 (36%), Gaps = 35/369 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 67 LISKNAVRVTDTLQQAGYRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR---------------------------SDLITDG 102
+ + + ++ +++T R + G
Sbjct: 126 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPPEAATAEPPRRLKRDELDRRTHAVDASG 182
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 183 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRYR 242
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A G I+ + + + R++ E+ KLL + + L
Sbjct: 243 EDPVRMLRVVRFAAKLGF-EIEPHTREPINALADLINNVPAARLFDEMLKLLLSGHALAC 301
Query: 222 IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 302 LQRLRKEGLHHGLLPLLDVV--LEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATLLW 359
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
+ + + ++ + L L +
Sbjct: 360 HDMRQRFEQYTAEGEFPVPSLHRAMDDVLDMQTEKLAIHKRYSADMREIWGLQLRLEKRS 419
Query: 342 HQDTCFILQ 350
+ +L+
Sbjct: 420 GRSALRLLE 428
>gi|167895735|ref|ZP_02483137.1| poly(A) polymerase [Burkholderia pseudomallei 7894]
Length = 484
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 72/370 (19%), Positives = 137/370 (37%), Gaps = 36/370 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 37 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 95
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 96 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDAS 152
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 153 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 212
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 213 REDPVRMLRVVRFAAKLGF-DIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 271
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 272 CLKQLRKQGLHHGLLPLLDVV--LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFATLL 329
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ I + ++ + L L
Sbjct: 330 WHDMRQRFEQYSADGEFPVPALQRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKR 389
Query: 341 THQDTCFILQ 350
+ + +L+
Sbjct: 390 SGRSALRLLE 399
>gi|332982085|ref|YP_004463526.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Mahella australiensis 50-1 BON]
gi|332699763|gb|AEE96704.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Mahella australiensis 50-1 BON]
Length = 463
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/452 (15%), Positives = 137/452 (30%), Gaps = 60/452 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I L + + +VGGAVRD L+ + DIDI L + V
Sbjct: 17 AMTIAKRLMQAGARCYLVGGAVRDRLLGIYTTDIDIEVYGLSYEEIAQLINPILHVDLVG 76
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL----RRDFTINALYAD 130
+G + DI R + T + T D + D RRDFTINA+ D
Sbjct: 77 KQFGV--LKAHGHDIDIALPRIEKNTGAGHRDFDVTVDPELDIYQASRRRDFTINAIMLD 134
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
I G + + +D LR+ R +F +
Sbjct: 135 LSTMEIIDPHGGLKDLESHVLR-HVDDNTFADDPLRVYRAMQFAGRLEYTIAPETLALCR 193
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN---------------GGIFKEIF 235
L LL+AK P + +M + +
Sbjct: 194 HVDTTALPKE--RIYNEFKKLLLQAKRPSMGLKYMPDLGLIQQYPELAALIGNPEDPKYH 251
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQ---------------------- 273
++ L V A + E + + +
Sbjct: 252 PGERDTWEHTLMVVDYAANLREKSMHPDVLMWAALCHDVGKPLATHVSKNGRVSATGHDK 311
Query: 274 -DKKSILSMAKKFSLPREIRYFLISFFNCNFNQ----KTLSIPEIKKLFYLYGDKVMIAK 328
+ ++ + + + + ++ + K + +L L
Sbjct: 312 IGRSIAETLLNRITEHKHLIKAVLPLVEYHMQPLLLYKQKNKVTDGQLRRLANSVNYHEL 371
Query: 329 LKIFLALHYNNLTHQDTCFILQVLS------DIIHWKKPLFPLTGDDVVKYGIPPGKKVG 382
L + A + + + ++ L ++I +K + G D++ G+ PGK
Sbjct: 372 LLLSEADTMSKKSGAVSDAHIKWLRSRFDALNLIPGQKIKPIVQGKDLIAIGLRPGKLFS 431
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++L + ++ + +E++ ++++ AS
Sbjct: 432 DLLHQAYEYQLDG---MPKEEILEIIKQKAAS 460
>gi|111226195|ref|YP_716989.1| RNA nucleotidyltransferase [Frankia alni ACN14a]
gi|111153727|emb|CAJ65485.1| RNA nucleotidyltransferase [Frankia alni ACN14a]
Length = 494
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 85/463 (18%), Positives = 153/463 (33%), Gaps = 66/463 (14%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ----------DIDIATTILPDRVMRI 62
+ + +VGG+VRD+L+ D+D AT P+RV+ I
Sbjct: 25 PAADELGRVFAAHGHLLHLVGGSVRDALLGRPTTGATGAGGAPADLDFATDARPERVLEI 84
Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRD 121
I++GT+ + R F+ITT RS+ R +V + +AD RRD
Sbjct: 85 TRGWAEATWEAGIAFGTVGLARRGLRFEITTYRSEAYDRQSRNPQVTYGDSLEADLSRRD 144
Query: 122 FTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NA+ G +D GG+ DL ++ +D LRILR RF A G
Sbjct: 145 FTVNAMAVSVPGHDFVDLFGGMADLARGVLRTPASPAASFDDDPLRILRAARFEATLGLT 204
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+ + ++ I+S ERI E+ KLL A +P+ + + G+ + +V
Sbjct: 205 PVPELVEAMRARTERL-AIVSPERIRDELRKLLLAADPVAGLERLVEIGVADIVLPEVAA 263
Query: 241 ISLDQLSQVIEAEQVFEW--------------KIDSLLRFIVLISWQDKKSILSM----- 281
+ ++ + D +LR+ L+ K
Sbjct: 264 MRMEIDEHHQHKDVYAHTLTVLRQAIALEEPGAPDEVLRWAALLHDIGKPRTRRHIPGGR 323
Query: 282 -----------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYG 321
P+++ + + E Y++
Sbjct: 324 VSFHHHEVVGRDMTRRRLAALHFPKDVTDAICRLVYLHLRFHGYGEGEWTDAAVRRYVHD 383
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVV 371
+ +L + + + + + L+GDD++
Sbjct: 384 AGPQLTRLHKLVRSDCTTRNRRKAAALSRTYDSLEERIADLAAREEIAAIRPELSGDDIM 443
Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLS---QEDLHHLLRK 410
G+ P + VG H + + +L R+
Sbjct: 444 ALLGLAPSRLVGQARAHMLEFRFECGLVGREAAEAELFRWARE 486
>gi|291616321|ref|YP_003519063.1| PcnB [Pantoea ananatis LMG 20103]
gi|291151351|gb|ADD75935.1| PcnB [Pantoea ananatis LMG 20103]
Length = 479
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 20/242 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T P+++ ++F R
Sbjct: 53 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTNATPEQMRKLFRNCRL--- 109
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------------TDGRYAKVVFTRDWKADS 117
+ ++ + ++ T R G + + D+
Sbjct: 110 -VGRRFRLAHVMFGPEVIEVATFRGHHQIEETSDDHNNSQRAQSGMLLRDNIFGSIEDDA 168
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRD TIN+LY V DYVGGLNDL+ I+ IGD R ED +R+LR RF A
Sbjct: 169 QRRDLTINSLYYSVADFSVRDYVGGLNDLQQGIIRLIGDPETRYREDPVRMLRVARFAAK 228
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I + + L+ + + R++ E KLL+A + + + +F+ +F
Sbjct: 229 LNM-RIAPETAEPIPRLASLLRDVPAARLFEESLKLLQAGYGYSTWLKLCEYQLFQPLFP 287
Query: 237 DV 238
+
Sbjct: 288 TL 289
>gi|262401705|ref|ZP_06078271.1| poly(A) polymerase [Vibrio sp. RC586]
gi|262352122|gb|EEZ01252.1| poly(A) polymerase [Vibrio sp. RC586]
Length = 457
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/297 (21%), Positives = 122/297 (41%), Gaps = 25/297 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R
Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R G + D+ R
Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF
Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLD 210
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I+ D L+ + + R++ E K+L+A + L M +F+++F +
Sbjct: 211 F-DIEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMREYNLFQQLFPTI 269
Query: 239 QEI-------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
E +Q+ ++ + D + + + ++ +A +
Sbjct: 270 AEHFTSDHSSQTEQMLDLVLDATDIRIEEDLRINPAFMFAAMLWYPMIKLADQLMES 326
>gi|89898029|ref|YP_515139.1| Poly (A) polymerase [Chlamydophila felis Fe/C-56]
gi|89331401|dbj|BAE80994.1| Poly (A) polymerase [Chlamydophila felis Fe/C-56]
Length = 427
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 7/233 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
++++ L K K+ IVGG +RD L+N + +D DI+T+ P+ + +F
Sbjct: 41 FSPHALSVVKTLRKAGYKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNC---- 96
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYA 129
I + I + +++T RS + K + D LRRDFTIN L+
Sbjct: 97 ILVGKRFRLAHIRFSNQIIEVSTFRSGSADEDSLIIKDNLWGTAEEDVLRRDFTINGLFY 156
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + +IDY GG++DL NR ++ IGD R +D +R+LR + + + +D L
Sbjct: 157 DPTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILSRA-QFTVDPKTLE 215
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
A + + L S R++ E+ K+L + I + +F + ++
Sbjct: 216 ALRECRYELIKSSQARVFEELIKMLGSGVSSKFFKLTVEYQILEILFPYMDKV 268
>gi|221200986|ref|ZP_03574026.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD2M]
gi|221206562|ref|ZP_03579575.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD2]
gi|221173871|gb|EEE06305.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD2]
gi|221178836|gb|EEE11243.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD2M]
Length = 512
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/369 (18%), Positives = 135/369 (36%), Gaps = 35/369 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 67 LISKNAVRVTDTLQQAGYRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR---------------------------SDLITDG 102
+ + + ++ +++T R + G
Sbjct: 126 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPPEAATAEPPRRLKRDELDRRTHAVDASG 182
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 183 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRYR 242
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A G I+ + + + R++ E+ KLL + + L
Sbjct: 243 EDPVRMLRVVRFAAKLGF-EIEPHTREPINALADLINNVPAARLFDEMLKLLLSGHALAC 301
Query: 222 IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 302 LQRLRKEGLHHGLLPLLDVV--LEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATLLW 359
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
+ + + ++ + L L +
Sbjct: 360 HDMRQRFEQYTAEGEFPVPALHRAMDDVLDMQTEKLAIHKRYSADMREIWGLQLRLEKRS 419
Query: 342 HQDTCFILQ 350
+ +L+
Sbjct: 420 GRSALRLLE 428
>gi|74318068|ref|YP_315808.1| poly(A) polymerase, PcnB [Thiobacillus denitrificans ATCC 25259]
gi|74057563|gb|AAZ98003.1| poly(A) polymerase, PcnB [Thiobacillus denitrificans ATCC 25259]
Length = 462
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 67/248 (27%), Positives = 106/248 (42%), Gaps = 28/248 (11%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ + L + K +VGGAVRD L+ + +D D+AT P+ V R+F ++R
Sbjct: 40 ALKVCETLAQAGFKGYLVGGAVRDLLLGGTPKDFDVATDATPEEVRRLFRRSRI----IG 95
Query: 75 ISYGTIKIICRKKYFDITTL----------------------RSDLITDGRYAKVVFTRD 112
+ + ++C ++ ++TT R GR
Sbjct: 96 RRFQIVHVMCGRETIEVTTFRANGQKEAEDEDAHGDDAPAASRRLTDEHGRLLSDNVFGS 155
Query: 113 WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171
D+ RRDFTINALY D + +V DY GG+ D + R ++ IGD R ED +R+LR
Sbjct: 156 MADDAARRDFTINALYYDPAREEVHDYFGGVGDCKKRVLRMIGDPETRYREDPVRMLRAA 215
Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231
RF A ID + L + RI+ E KLL + + L + + G+
Sbjct: 216 RFAAKLDFH-IDPETRKPVATLAPLLANIPRARIFDEALKLLLSGHALRGVHQLRAEGLH 274
Query: 232 KEIFLDVQ 239
+ +
Sbjct: 275 HGMLPLLD 282
>gi|261855731|ref|YP_003263014.1| poly(A) polymerase [Halothiobacillus neapolitanus c2]
gi|261836200|gb|ACX95967.1| poly(A) polymerase [Halothiobacillus neapolitanus c2]
Length = 453
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 15/250 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+N+L L+ + +VGG VRD L + +D D+ T P++V +F R
Sbjct: 24 SDHALNVLQRLHDQGYAAFLVGGCVRDLLRGMRPKDFDVVTDAKPEQVRSLFRHARI--- 80
Query: 72 PTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + +I ++TT R GR + D RRDF N
Sbjct: 81 -IGRRFRIVHVIFGHDMIEVTTFRGGDEDGVRRSDQGRILRDNVFGSIDEDVWRRDFACN 139
Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY + +++DYV G D+ ++ IG+ R ED +R+LR RF A G +
Sbjct: 140 ALYYNFANAEIVDYVQGWQDIETGHLRIIGNPVTRYQEDPVRMLRAARFMAKLGF-TLTG 198
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--- 241
D + A + + LK ++ R++ E K+ + A + + + +F + +
Sbjct: 199 DSVSAIQECRDLLKSIAPARLFDESIKIFQGGYAWAAFLKLRELDLLGYLFPGLDNLLNR 258
Query: 242 SLDQLSQVIE 251
D++S+++E
Sbjct: 259 DYDRISRLVE 268
>gi|254499345|ref|ZP_05112016.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella
drancourtii LLAP12]
gi|254351450|gb|EET10314.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella
drancourtii LLAP12]
Length = 462
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 72/346 (20%), Positives = 141/346 (40%), Gaps = 15/346 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L+ L G ++ IVGG+VRD +++ + +D D+AT P+++ +F R
Sbjct: 58 NALKVLNRLISGGFQAYIVGGSVRDLMLHKAPKDFDVATNATPNQIKNLFRNGRI----I 113
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA--------DSLRRDFTIN 125
+ + ++ ++ ++ T RS D + D+ RRDFTIN
Sbjct: 114 GRRFKLVHVLFHREIIEVATFRSHEAVDESQQTNERGMLVRDNAFGSLDEDAWRRDFTIN 173
Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+LY + +ID+ GG+ D++++ I+ IGD R ED +R+LR RF A N+
Sbjct: 174 SLYYNITDSTIIDFTGGVKDVQDKLIRMIGDPVTRYKEDPVRMLRAVRFSAKL-HFNLAP 232
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ + +SS R++ E+ KL + N + G+F+ + + LD
Sbjct: 233 ETEAPFPDISYLITHVSSSRLFDEMTKLYQCGNAETVQKLLLQYGLFQHLCPQTTAL-LD 291
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
V + D +R ++ ++ ++++ +
Sbjct: 292 SQYPVNALLAIALENTDIRIRDDKPVTPAFLFAVFLWFPMIERSKQLQSAGMDPLPAVEK 351
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
+L I E K+ + I + L + +LQ
Sbjct: 352 AMSLVIAEQNKIISIPKRYTQIIREIWLLQYRFTKRAGGRAFNLLQ 397
>gi|190149447|ref|YP_001967972.1| poly(A) polymerase [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|189914578|gb|ACE60830.1| putative poly(A) polymerase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
Length = 521
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 68/377 (18%), Positives = 145/377 (38%), Gaps = 20/377 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF +
Sbjct: 96 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQ---CRL 152
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + +++ T R+D + G + + D+ RRD
Sbjct: 153 IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRD 212
Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
F++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 213 FSVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKLDMF 272
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D + LK + + R++ E KL ++ M G+F+++F +
Sbjct: 273 -LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLFPVLTP 331
Query: 241 ISLDQLSQVIEAE--QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
++ E + D + + + ++L + + ++
Sbjct: 332 FFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLNS 391
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + E K L+ + + L + + L+ + +
Sbjct: 392 HDAMMLAANDVLAESCKAIALHRRHTSVIRDIWALQFQMTKRSGKRPQQTLEHVKFRAGF 451
Query: 359 KKPLF--PLTGDDVVKY 373
+ + G D+V+
Sbjct: 452 DLLVMRAEIEGGDLVEL 468
>gi|218439348|ref|YP_002377677.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7424]
gi|218172076|gb|ACK70809.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7424]
Length = 903
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 79/432 (18%), Positives = 145/432 (33%), Gaps = 40/432 (9%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLM--NLSV---QDIDIATTIL--------PDRVMR 61
L N + +VGGAVRD L+ QDID+ +
Sbjct: 475 LQNAAKEAQQRGWHLYLVGGAVRDLLLAPGNQTLLLQDIDLVVDGFHRAADVGAGVELAS 534
Query: 62 IFSKTRYKV-IPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWK 114
+ +V + + T +I K DI T R++ V +
Sbjct: 535 KLREIYPQVRLSVHGEFQTAALIWHKDPELGSLMIDIATARTEFYPYPAANPQVEASSIR 594
Query: 115 ADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170
D RRDFTINAL ++G+++D+ GG+ DLR+ IK + + +ED RI R
Sbjct: 595 QDLYRRDFTINALAVRLTSPKEGELLDFFGGVEDLRSHQIKVLHA--NSFIEDPTRIYRA 652
Query: 171 FRFFAHYGEKNIDSDGLVASI----------KAKKGLKILSSERIWSEINKLLEAKNPLN 220
RF G K + + + R+ +E+N +LEA
Sbjct: 653 VRFAVRLGFKIEPLTEEYIRYAIESGVYEKLRLENHPAPALTTRLRAELNYILEASYWKP 712
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
A+ + + G + + + + + D + ++ S+ +
Sbjct: 713 ALQLLSHLGALRPLHSQLVLTGELWWEIRCVSRWLRYLDPDHHVSHWLIRLEILIASLKT 772
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK-LKIFLALHYNN 339
+ N + +I + V++ + KI + +
Sbjct: 773 EERIKIASNLQLPKDSIERLENLDSMEKTIKSALPNCQKVSEFVLLLRQYKIQILIIVGV 832
Query: 340 LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399
+ + I + + W K L G+D+ G P K IL ++ +
Sbjct: 833 RSDKSIRHI--IWQYLTQWSKTQALLNGNDLKAMGYKPSPKFKEILDQLLIATLDQKIET 890
Query: 400 SQEDLHHLLRKL 411
QE + ++ +
Sbjct: 891 KQEAVD-FVKTI 901
>gi|167912386|ref|ZP_02499477.1| poly(A) polymerase [Burkholderia pseudomallei 112]
Length = 483
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 72/370 (19%), Positives = 137/370 (37%), Gaps = 36/370 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 36 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 94
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 95 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDAS 151
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 152 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 211
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 212 REDPVRMLRVVRFAAKLGF-DIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 270
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 271 CLKQLRKQGLHHGLLPLLDVV--LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFATLL 328
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ I + ++ + L L
Sbjct: 329 WHDMRQRFEQYSADGEFPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKR 388
Query: 341 THQDTCFILQ 350
+ + +L+
Sbjct: 389 SGRSALRLLE 398
>gi|207721701|ref|YP_002252140.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum
MolK2]
gi|206586863|emb|CAQ17448.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum
MolK2]
Length = 516
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 60/263 (22%), Positives = 111/263 (42%), Gaps = 36/263 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++R
Sbjct: 63 PKLLSRNAVKVTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQALFRRSR 122
Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLR--------------------------SD 97
+ + + + +++T R
Sbjct: 123 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHA 178
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFT+NA+Y + V DY G+ D+R R ++ IGD
Sbjct: 179 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHRGMEDMRARLLRMIGDP 238
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
H R ED +R+LR RF A G +I+ + + + + R++ E+ KLL +
Sbjct: 239 HTRYREDPVRMLRAVRFAAKTGF-DIEPATRAPIAELGPLIHNVPAARLFDEMLKLLMSG 297
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ 239
+ ++ + G+ + + +
Sbjct: 298 HAWASLQELRKAGLHRGLLPLLD 320
>gi|295099606|emb|CBK88695.1| tRNA nucleotidyltransferase/poly(A) polymerase [Eubacterium
cylindroides T2-87]
Length = 436
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 83/405 (20%), Positives = 139/405 (34%), Gaps = 44/405 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ I+ + ++ ++ +VGG VRD L+ D DIAT LP+ +++F VI T
Sbjct: 7 VKEIIEIYHRAGYEAFVVGGCVRDYLLGKEPHDYDIATNALPEVTIQLFDH----VILTG 62
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYADQQ 132
+ +GT+ I+ + ++TT R + F + D RRDFTINA+ +
Sbjct: 63 LKHGTVTILSN-EPVEVTTFRLESEYKDHRHPETVRFVNTIEEDLSRRDFTINAMAYNDI 121
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ID G DL R I+ + D R ED LR+LR RF A + + L
Sbjct: 122 RGLIDPFHGQIDLEKRKIRCVNDPDTRFKEDALRMLRAHRFAAKLNFEIEEHTKLAIEKN 181
Query: 193 AKKGLKILSSERIW-----SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ I + I + KE + D L
Sbjct: 182 SSLLRYISIERIRLELVEIMRYDPYELENMTELLIDILPQLKQCKECEQNSPWHDTDVLH 241
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM---------------------AKKFS 286
+ A + F D L + +L+ K + KKF
Sbjct: 242 HTLRALK-FLKPFDETLAWAILMHDFGKPETKTTKDGRDHFYGHPLISKKISLELCKKFK 300
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKL-FYLYGDKVMIAKLKIFLALHYNNLTHQDT 345
L R + + + ++ I K D+ M+ +L + +
Sbjct: 301 LTNIQRKRIPVLIEYHDDHLNANLKTIFKFRIQRNFDEEMMDQLLTLKYCDIMAHSLKGI 360
Query: 346 CFILQVLS---------DIIHWKKPLFPLTGDDVVKYGIPPGKKV 381
I + I + G DV++Y G ++
Sbjct: 361 QSIENWKAFKTFYEKEIKIRPVSIKDLAINGSDVIQYTDRKGSQI 405
>gi|212696602|ref|ZP_03304730.1| hypothetical protein ANHYDRO_01142 [Anaerococcus hydrogenalis DSM
7454]
gi|212676333|gb|EEB35940.1| hypothetical protein ANHYDRO_01142 [Anaerococcus hydrogenalis DSM
7454]
Length = 371
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 80/257 (31%), Positives = 130/257 (50%), Gaps = 6/257 (2%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
++ L + ++ +VGGAVRD L+ + DID+ T P+ +MRIFS K+I
Sbjct: 4 KYLIDRLEEEGFETYLVGGAVRDRLLGKEIHDIDLTTRARPNDIMRIFSD--LKLIDIGK 61
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG-RYAKVV-FTRDWKADSLRRDFTINALYADQQG 133
+GTIK+I + K ++IT+ R++ R+ + F+ + D RRDFTINA+ ++G
Sbjct: 62 KFGTIKVIYKSKEYEITSFRAESSYKDKRHPDQISFSNTIEEDLKRRDFTINAMA-QRKG 120
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
ID GG DL + I+ +G+ + RI EDYLR LR RF +I+ + A
Sbjct: 121 DFIDLFGGKKDLERKIIRAVGNPYERIEEDYLRALRAVRFATVLDF-SIEDNLKDAIKNM 179
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
+ +S ERI E++K+L AKNP I + + IF +V+++
Sbjct: 180 AGHIDEISKERIRDEVDKILLAKNPSRGIRLLDELNLLAYIFPEVKKMVGFDQHSSHHNL 239
Query: 254 QVFEWKIDSLLRFIVLI 270
+F+ + L +
Sbjct: 240 DLFDHTMKVLENCPSNL 256
>gi|115374966|ref|ZP_01462237.1| poly(A) polymerase [Stigmatella aurantiaca DW4/3-1]
gi|310820531|ref|YP_003952889.1| poly(a) polymerase [Stigmatella aurantiaca DW4/3-1]
gi|115367993|gb|EAU66957.1| poly(A) polymerase [Stigmatella aurantiaca DW4/3-1]
gi|309393603|gb|ADO71062.1| Poly(A) polymerase [Stigmatella aurantiaca DW4/3-1]
Length = 576
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 68/290 (23%), Positives = 114/290 (39%), Gaps = 28/290 (9%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D D + ++ L++ ++ +VGG VRD L+ +D D+AT+ P V F R
Sbjct: 112 DPDALKVVLRLHQHGHQAYLVGGCVRDLLLGRRPKDFDVATSAHPGEVRATFRNCRL--- 168
Query: 72 PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRY-----------------AKVVFTRDW 113
+ + K +++T R++ +
Sbjct: 169 -IGRRFRLAHVYFKGGKIIEVSTFRANPLEMEAPEEEGAENGNGNGDDLLITHDNVFGTA 227
Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
+ D+ RRDFTIN L+ D +G+VIDYV G DL R I+ IGD R+ ED +RILR R
Sbjct: 228 EQDARRRDFTINGLFYDVTEGRVIDYVRGRRDLDERYIRTIGDPEIRMREDPVRILRAVR 287
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
F + G + + R+ E +L+ ++ + K
Sbjct: 288 FASKLGLDIESRTYAAMEGAVEDL-PRCAPARLLEETFRLIRGGVAAPSLKLLSALDALK 346
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282
+ V L + E+E+ F ++L R + D +L+
Sbjct: 347 ILLPPVDAY----LRRSRESERTFYAFAEALDRRVATGEPLDDAILLATL 392
>gi|83748968|ref|ZP_00945977.1| poly(a) polymerase / tRNA nucleotidyltransferase [Ralstonia
solanacearum UW551]
gi|207744197|ref|YP_002260589.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum
IPO1609]
gi|83724391|gb|EAP71560.1| poly(a) polymerase / tRNA nucleotidyltransferase [Ralstonia
solanacearum UW551]
gi|206595602|emb|CAQ62529.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum
IPO1609]
Length = 516
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 60/263 (22%), Positives = 111/263 (42%), Gaps = 36/263 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++R
Sbjct: 63 PKLLSRNAVKVTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQALFRRSR 122
Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLR--------------------------SD 97
+ + + + +++T R
Sbjct: 123 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHA 178
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFT+NA+Y + V DY G+ D+R R ++ IGD
Sbjct: 179 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHRGMEDMRARLLRMIGDP 238
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
H R ED +R+LR RF A G +I+ + + + + R++ E+ KLL +
Sbjct: 239 HTRYREDPVRMLRAVRFAAKTGF-DIEPATRAPIAELGPLIHNVPAARLFDEMLKLLMSG 297
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ 239
+ ++ + G+ + + +
Sbjct: 298 HAWASLQELRKAGLHRGLLPLLD 320
>gi|307728540|ref|YP_003905764.1| poly(A) polymerase [Burkholderia sp. CCGE1003]
gi|307583075|gb|ADN56473.1| poly(A) polymerase [Burkholderia sp. CCGE1003]
Length = 532
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 69/377 (18%), Positives = 139/377 (36%), Gaps = 35/377 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R
Sbjct: 81 LISRNAIRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRARI- 139
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-------------------------SDLITDGRY 104
+ + + ++ + +T R + GR
Sbjct: 140 ---IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAAPPRRLKRDELDRRTHAVDASGRV 196
Query: 105 AKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILED 163
+ + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R ED
Sbjct: 197 LRDNVWGEQHEDATRRDFTINAMYYDPATETVLDYHNGMADVRARLLRMIGDPATRYRED 256
Query: 164 YLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223
+R+LR RF A ID+ + + + R++ E+ KL+ + + L +
Sbjct: 257 PVRMLRVVRFAAKLDF-EIDAATREPIASMADLINNVPAARLFDEMLKLMLSGHALACLK 315
Query: 224 HMYNGGIFKEIFLD----VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279
+ G+ + +++ + ++ + + + L + +
Sbjct: 316 RLRQEGLHHGLLPLLDVVLEQPTGEKFITLALNNTDARVRAGKPVSPGFLFATLLWHDVQ 375
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+KF E + I K F ++ +L++ +
Sbjct: 376 QRWQKFEANGEYPVPALHRAMDEVLDMQTEKLAIHKRFSSDMREIWGLQLRLEKRSGRSA 435
Query: 340 LTHQDTCFILQVLSDII 356
L + ++
Sbjct: 436 LKLLEHQRFRAGYDFLL 452
>gi|78065319|ref|YP_368088.1| Poly(A) polymerase, PcnB [Burkholderia sp. 383]
gi|77966064|gb|ABB07444.1| Poly(A) polymerase, PcnB [Burkholderia sp. 383]
Length = 512
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 67/379 (17%), Positives = 141/379 (37%), Gaps = 37/379 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 67 LISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR---------------------------SDLITDG 102
+ + + ++ +++T R + G
Sbjct: 126 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPPEAAAAEPPKRLKRDELDRRTHAVDASG 182
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 183 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRFR 242
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A G I+ + + + R++ E+ KLL + + L
Sbjct: 243 EDPVRMLRVVRFAAKLGF-EIEPHTREPINALADLINNVPAARLFDEMLKLLLSGHALAC 301
Query: 222 IVHMYNGGIFKEIFLD----VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+ + G+ + +++ ++ + + + L +
Sbjct: 302 LTQLRKEGLHHGLLPLLDVVLEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATLLWHD 361
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ ++++ EI + + I K + ++ +L++
Sbjct: 362 MRQRFEQYTAEGEIPVPALHRAMDDVLDMQTEKLAIHKRYSADMREIWGLQLRLEKRSGR 421
Query: 338 NNLTHQDTCFILQVLSDII 356
+ + + ++
Sbjct: 422 SAMRLLEHQRFRAGYDFLL 440
>gi|52696111|pdb|1VFG|A Chain A, Crystal Structure Of Trna Nucleotidyltransferase Complexed
With A Primer Trna And An Incoming Atp Analog
gi|52696112|pdb|1VFG|B Chain B, Crystal Structure Of Trna Nucleotidyltransferase Complexed
With A Primer Trna And An Incoming Atp Analog
Length = 390
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 69/383 (18%), Positives = 127/383 (33%), Gaps = 9/383 (2%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+ + + ++ IVGG VRD L+ V D+D + + ++ + +
Sbjct: 2 VGQIAKEMGLRAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEF 61
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
GT + K + T R + V K D +RRDFTINA+ +
Sbjct: 62 GTAHLKIGKLKLEFATARRETYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNLEDYG 121
Query: 138 YVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
+ + +ED +RILR RF K S +
Sbjct: 122 TLIDYFGGLRDLKDKVIRVLHPVSFIEDPVRILRALRFAGRLNFKLSRSTEKLLKQAVNL 181
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
GL + KL ++ I+ +Y E ++ + + L ++ +V
Sbjct: 182 GLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQWNEKVLQKLYALRKV 241
Query: 256 FEWKI----DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+W + + + L ++ K L + K S+
Sbjct: 242 VDWHALEFSEERIDYGWLYLLILISNLDYERGKHFLEEMSAPSWVRETYKFMKFKLGSLK 301
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
E K + + K L L + I L + K P + +++
Sbjct: 302 EELKKAKENYEVYRLLKPLHTSVLLLLMLEEELKEKIKLYLEKLRKVKLPKEKI--EELK 359
Query: 372 KYGIPPGKKVGNILVHCKQEWIN 394
K G+ GK++G + K+E +N
Sbjct: 360 KQGLK-GKELGERIEELKREIMN 381
>gi|331006253|ref|ZP_08329573.1| Poly(A) polymerase [gamma proteobacterium IMCC1989]
gi|330419942|gb|EGG94288.1| Poly(A) polymerase [gamma proteobacterium IMCC1989]
Length = 439
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 63/370 (17%), Positives = 131/370 (35%), Gaps = 19/370 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
++ L + ++ +VGG++RD L+ +D D++T P+ V ++F R
Sbjct: 24 SPSATRVIDGLVQAGFQAYLVGGSIRDGLLGCQPKDFDVSTDATPEEVKKVFRNARI--- 80
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL--------RRDFT 123
+ + + ++ ++TT R + + + + RRDFT
Sbjct: 81 -IGRRFRIVHVRFGREIIEVTTFRGKSSDSSHQVESNTGQLLRDNVYGNMHSDAIRRDFT 139
Query: 124 INALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+NALY + V DY G++D++ R ++ IGD R ED +R+LR RF A G I
Sbjct: 140 VNALYYSPENGSVYDYTNGVDDIKKRQLRIIGDPLTRYKEDPVRLLRAIRFSAKLGF-TI 198
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238
+ L + R++ EI KL + + + + + +F
Sbjct: 199 EEKTANPIFDNGHLLTHVPPARLFDEILKLFLNGSATASYTLLKDYQLLDALFPATMAVM 258
Query: 239 -QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+ + L + + D + + + + + +
Sbjct: 259 EKSPYFEGLISAVMINTDKRIRNDKRVTPAFIYGALLWPAFIYEQHRLVTEGVPIIAAVH 318
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
+ L+I I K F + ++ + ++ L + ++
Sbjct: 319 QAADAVIAQQLAIVAIPKRFTIPMRQIWELQWRLALRTGKKADKALEHEKFRAGYDFLLM 378
Query: 358 WKKPLFPLTG 367
+ L G
Sbjct: 379 REAAGEKLNG 388
>gi|167920340|ref|ZP_02507431.1| poly(A) polymerase [Burkholderia pseudomallei BCC215]
Length = 488
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 72/370 (19%), Positives = 137/370 (37%), Gaps = 36/370 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 41 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 99
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 100 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDAS 156
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 157 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 216
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 217 REDPVRMLRVVRFAAKLGF-DIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 275
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 276 CLKQLRKQGLHHGLLPLLDVV--LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFATLL 333
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ I + ++ + L L
Sbjct: 334 WHDMRQRFEQYSADGEFPVPALQRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKR 393
Query: 341 THQDTCFILQ 350
+ + +L+
Sbjct: 394 SGRSALRLLE 403
>gi|167837745|ref|ZP_02464628.1| polyA polymerase [Burkholderia thailandensis MSMB43]
Length = 517
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 72/370 (19%), Positives = 137/370 (37%), Gaps = 36/370 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 70 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 128
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 129 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDAS 185
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 186 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 245
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 246 REDPVRMLRVVRFAAKLGF-DIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 304
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 305 CLKQLRRQGLHHGLLPLLDVV--LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFATLL 362
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ I + ++ + L L
Sbjct: 363 WHDMRQRFEQYVANGEYPVPAINRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKR 422
Query: 341 THQDTCFILQ 350
+ + +L+
Sbjct: 423 SGRSALRLLE 432
>gi|322515233|ref|ZP_08068231.1| polyA polymerase family protein [Actinobacillus ureae ATCC 25976]
gi|322118738|gb|EFX90944.1| polyA polymerase family protein [Actinobacillus ureae ATCC 25976]
Length = 510
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 73/414 (17%), Positives = 151/414 (36%), Gaps = 31/414 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF ++
Sbjct: 85 KNALVIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIF---GHQCRL 141
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + +++ T R+D G + + D+ RRD
Sbjct: 142 IGRRFRLAHIVFGRDIYEVATFRADHSNHSSDKISKVSEEGMLLRDNVYGTLREDAQRRD 201
Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 202 FTVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVIRYQEDPVRMLRAVRFMAKLDMF 261
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D + LK + + R++ E KLL++ M G+F+++F +
Sbjct: 262 -LDKPSDAPIRELAHLLKNIPAARLFDESLKLLQSGQGFKTYQLMRQYGLFEQLFPVLVP 320
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+ + + + + R + ++ + N
Sbjct: 321 F-FTEHNDSNAERMLSKALNSTDERIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLN 379
Query: 301 CNFNQK-TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ + + + + + ++ AL + +T + Q L +
Sbjct: 380 SHDAMMLAANDVLDESCKAIALHRRHTSVIRDIWALQFQ-MTKRSGKRPQQTLEYVKFRA 438
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS--QEDLHHLLRKL 411
+ ++ I G V W F + ++ +R L
Sbjct: 439 GFDLLV-----MRAEIEGGDLV-----ELSAWWHEYQFSNDAQRAEMLKAVRNL 482
>gi|332526336|ref|ZP_08402462.1| poly(A) polymerase [Rubrivivax benzoatilyticus JA2]
gi|332110472|gb|EGJ10795.1| poly(A) polymerase [Rubrivivax benzoatilyticus JA2]
Length = 515
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 88/439 (20%), Positives = 159/439 (36%), Gaps = 51/439 (11%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D + + ++ L ++ IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 44 LLDDNAVRVVRTLKDAGHEAYIVGGAVRDLLVGLRPKDFDVATDATPEQVKALFRRAFI- 102
Query: 70 VIPTSISYGTIKIICR----KKYFDITTLRSDL--------------------------I 99
+ + +I + +++T R+
Sbjct: 103 ---IGRRFRLVHVIFGRGREHEVIEVSTFRAYFDAAAAEQVKGNEKTARGEIADQRVVVD 159
Query: 100 TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158
GR + D+ RRDFTINA+Y D + V+DY GGL D R R ++ IGD
Sbjct: 160 ASGRVLRDNVWGPQIEDAARRDFTINAMYYDPTTQVVVDYHGGLADSRARVLRMIGDPET 219
Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218
R ED +RI+R R A G ++ K L + R++ E+ KLL+ +
Sbjct: 220 RYREDPVRIVRVVRIAAKLGF-EVEPATRAPMRKMAALLNNVPPSRMFDEMVKLLQTGHA 278
Query: 219 LNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI 278
L ++ + G+ + +F + E + D+ R + +
Sbjct: 279 LKSLAELKKQGLDQGVFPVLDAAFRADARHPKRDEFIRYALEDTDARVNDGRAVVPSFML 338
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
M L R Q+ + ++ + G + A ++ +
Sbjct: 339 AVMLWHDVLDRWAAIQAGGEAPFAALQQAVDAVFDARIGDISGRGKLAADMREIWLM--Q 396
Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398
+ T + L ++ G D ++ VG I + W F
Sbjct: 397 PRFERRTPAAARSLVAQPRFRA------GYDFLRLR----ADVGEIDPALAEWW--EDFH 444
Query: 399 L-SQEDLHHLLRKLIASSQ 416
L ++ +L +L +S+
Sbjct: 445 LGDDDEREAMLAELKPASK 463
>gi|167563975|ref|ZP_02356891.1| polyA polymerase [Burkholderia oklahomensis EO147]
gi|167571119|ref|ZP_02363993.1| polyA polymerase [Burkholderia oklahomensis C6786]
Length = 521
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 79/431 (18%), Positives = 151/431 (35%), Gaps = 60/431 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P +V +F + R
Sbjct: 74 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTQVQHLFRRARL- 132
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 133 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPAETAPAKRMKRDELDRRTHAVDAS 189
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 190 GRVLRDNVWGEQHEDAARRDFTINAMYYDPATQTVLDYHDGMADMRARLLRMIGDPVTRF 249
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G I+ + + + + + R++ E+ KLL + + L
Sbjct: 250 REDPVRMLRVVRFAAKLGF-EIEENTRAPIKELADLINNVPAARLFDEMLKLLLSGHALA 308
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 309 CLRQLRKQGLHHGLLPLLDVV--LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFATLL 366
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ + I + ++ + L L
Sbjct: 367 WHDMRQRWEQYAAGGEYPVPAINHAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKR 426
Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG---KKVGNILVHCKQEW---IN 394
+ + +L+ G D + G VG W I+
Sbjct: 427 SGRSALRLLEHQRFRA----------GYDFLLLRCESGELDPAVGQ-------WWTDFID 469
Query: 395 SSFQLSQEDLH 405
++E L
Sbjct: 470 GD-AATREALL 479
>gi|187922750|ref|YP_001894392.1| poly(A) polymerase [Burkholderia phytofirmans PsJN]
gi|187713944|gb|ACD15168.1| poly(A) polymerase [Burkholderia phytofirmans PsJN]
Length = 529
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 68/377 (18%), Positives = 138/377 (36%), Gaps = 35/377 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R
Sbjct: 78 LISRNAIRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRARI- 136
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-------------------------SDLITDGRY 104
+ + + ++ + +T R + GR
Sbjct: 137 ---IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAPPARRLKRDELDRRTHAVDASGRV 193
Query: 105 AKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILED 163
+ + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R ED
Sbjct: 194 LRDNVWGEQHEDATRRDFTINAMYYDPATQTVLDYHNGMADMRARLLRMIGDPATRYRED 253
Query: 164 YLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223
+R+LR RF A I+ + + + R++ E+ KL+ + + L +
Sbjct: 254 PVRMLRVVRFAAKLDF-EIEDSTREPIANMADLINNVPAARLFDEMLKLMLSGHALACLK 312
Query: 224 HMYNGGIFKEIFLD----VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279
+ G+ + +++ ++ + + + L + +
Sbjct: 313 RLRQEGLHHGLLPLLDVVLEQPIGEKFITLALNNTDARVRAGKPVSPGFLFATLLWHDVQ 372
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+KF E + + I K F ++ +L++ +
Sbjct: 373 QRWQKFEANGEYPVPALHRAMDDVLDMQTEKLAIHKRFSSDMREIWGLQLRLEKRSGRSA 432
Query: 340 LTHQDTCFILQVLSDII 356
L + ++
Sbjct: 433 LKLLEHQRFRAGYDFLL 449
>gi|148244592|ref|YP_001219286.1| poly(A) polymerase [Candidatus Vesicomyosocius okutanii HA]
gi|146326419|dbj|BAF61562.1| poly(A) polymerase [Candidatus Vesicomyosocius okutanii HA]
Length = 383
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 145/309 (46%), Gaps = 10/309 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D D + +++++NK K+ +VGG VRD L++L+ +D DIAT P++V ++F ++R
Sbjct: 14 LLDKDALKVINIINKAGFKAYLVGGCVRDFLLSLTPKDFDIATNAKPEQVHKLFKRSRL- 72
Query: 70 VIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTIN 125
+ + ++ +K+ ++ T RS + V+ + + D +RRD +IN
Sbjct: 73 ---IGRRFRLVHVMFSARKFIEVATFRSGKVQVANNGVVMRDNCYGNIEDDVVRRDLSIN 129
Query: 126 ALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY D + +VIDYVGGL D+R + + IG+ R +D +R++R RF + +
Sbjct: 130 ALYYDIETQEVIDYVGGLQDIRVQELHVIGNPKKRFEQDPVRMIRVIRFQTKLDFH-LSN 188
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A + L +S+ R++ E KL + + G+FK +F +
Sbjct: 189 EIKSAIFEQAPLLGNISTIRLYEECIKLFHNEYGFKIYQRLEEYGLFKYLFKQTHKNEFI 248
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ + + ++++ + + + + WQ + + KK + S
Sbjct: 249 KKALLNTSDRIKRNQSVTPVFLFAVFLWQAQNERFFVIKKKQCSTSLAMSQASEEVIIEQ 308
Query: 305 QKTLSIPEI 313
K +S+P
Sbjct: 309 IKQVSLPRW 317
>gi|297180382|gb|ADI16599.1| tRNA nucleotidyltransferase/poly(a) polymerase [uncultured gamma
proteobacterium HF0010_01E20]
Length = 447
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 77/365 (21%), Positives = 142/365 (38%), Gaps = 20/365 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D++ + ++ +LN ++ +VGG VRD+L + +D D+AT + V ++F ++R
Sbjct: 53 ISDTNALTVIEVLNANGFQAYLVGGCVRDALCGVKPKDFDVATNATLETVRQLFRRSRI- 111
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDWKADSLRRDFT 123
+ + + + +++T R G + D+ RRDFT
Sbjct: 112 ---VGKRFPIVHVRFGRDLIEVSTFRQSISDKIVHDDKGMILRDNAFGTLHEDAFRRDFT 168
Query: 124 INALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NALY D ++ID+V G+ D++ + ++FIGD R+ ED +R+LR RF A G +I
Sbjct: 169 ANALYYDPNSDEIIDFVDGVADIKRKLLRFIGDPKTRLAEDPVRMLRAIRFSAKLGF-SI 227
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D L + + LK +S R++ E KL + + I +F S
Sbjct: 228 DQQILNYTNETANSLKTVSPARLFDEFLKLFLSGYAEQVWRQVRETPIAGALFPCCIPSS 287
Query: 243 LDQLSQVIEAEQVF--------EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294
L+ + ++ + I LL D+ +L + Y
Sbjct: 288 PLVLAAMRNTDERILSGASVTPGFLIAVLLWDDFCARSLDQDDPEDDPAFTTLKNQQSYV 347
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
I F ++ I E L + + + L + I +
Sbjct: 348 AIPRRFGTFAREVWLIQERLHKRNLKSLDRLATHKRFRAGYDFLCLQAESNEQIAPIADW 407
Query: 355 IIHWK 359
++
Sbjct: 408 WTAFQ 412
>gi|260580633|ref|ZP_05848460.1| polyA polymerase [Haemophilus influenzae RdAW]
gi|260092695|gb|EEW76631.1| polyA polymerase [Haemophilus influenzae RdAW]
Length = 480
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 84/419 (20%), Positives = 156/419 (37%), Gaps = 42/419 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 60 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 116
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D+ R
Sbjct: 117 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 176
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 177 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 236
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + G+F+++F +
Sbjct: 237 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 295
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 296 SAY-------------FTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPL 342
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 343 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGS 402
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + P F G D++ G G + + W F E L+++
Sbjct: 403 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQFSNG-EQREQLIQE 455
>gi|163782168|ref|ZP_02177167.1| poly A polymerase [Hydrogenivirga sp. 128-5-R1-1]
gi|159882700|gb|EDP76205.1| poly A polymerase [Hydrogenivirga sp. 128-5-R1-1]
Length = 835
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 75/390 (19%), Positives = 140/390 (35%), Gaps = 25/390 (6%)
Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
+ N+ ++ IVGG VRD L+ V D+D RV ++ +GT
Sbjct: 449 IANRLGYRAYIVGGVVRDILLGKDVWDLDFVIEGDAIRVAEELAREHGVQPHPFPEFGTA 508
Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK----VI 136
+ + T R + V K D +RRDFTINA+ + +I
Sbjct: 509 HVKVGSLKLEFATARRETYPRPGAYPKVEKASLKEDLVRRDFTINAMAISVNPEDMGTLI 568
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
DY GG+ DL+++ ++ + +ED +RILR RF G K S + G
Sbjct: 569 DYFGGIRDLKDKIVRVLHP--VSFIEDPVRILRALRFAGRLGFKLSKSTERLLKQAVNLG 626
Query: 197 LKILSSERIWSEINKLLEAKN-------PLNAIVHMYNGGIFKEIFLDVQE--ISLDQLS 247
L + +L ++ + + ++++ I+L +++
Sbjct: 627 LLEEAPRGRIMNEIRLALREDRLLEILSLYRKFKVLEHVIKGFRWTQNLEDRLINLKKVT 686
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
E E + +V++S + ++ S P +R + S + K
Sbjct: 687 DWHSLEFPSERVDYGWVFLMVILSTVKPEVSERFLQEVSAPSWVRESMESLYTSLNALKD 746
Query: 308 LSIP-EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
E Y V I+ L I + L+ L + K P ++
Sbjct: 747 KLQRAERNSEVYRALKGVHISLLLILM---TCRDVQDKVKLFLERLRFV---KAPPEAVS 800
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
+ G+ G+++G + K+ ++
Sbjct: 801 --QLKSKGL-EGRELGEEIERLKERIMDEE 827
>gi|218248479|ref|YP_002373850.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8801]
gi|218168957|gb|ACK67694.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8801]
Length = 903
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 82/434 (18%), Positives = 155/434 (35%), Gaps = 40/434 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS-----VQDIDIATTIL--------PDRV 59
L K IVGGAVRD L++ +QDID+ +
Sbjct: 472 KLLQFAAKEAEKRGWHLYIVGGAVRDLLLSEEQEFLLLQDIDLVVDGFHRSADVGAGVEL 531
Query: 60 MRIFSKTRYKV-IPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRD 112
+ + + T ++ K + DI T R++ V
Sbjct: 532 ASTLQENFPNARLSIHGEFQTAALLWHKDPQLGSLWVDIATSRTEFYPYPAANPEVEASS 591
Query: 113 WKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168
+ D RRDFTINAL ++G+++D+ GG+ DLR+R I+ + + +ED RI
Sbjct: 592 IRQDLYRRDFTINALAVRLTPPRKGELLDFFGGMLDLRSRQIRVLHA--NSFIEDPTRIY 649
Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228
R RF G + + + G+ K L I + +
Sbjct: 650 RAVRFAVRLGFEIDPQTETYINYAIESGIYERLRIENHPAPALTTRLKAELKYI--LESY 707
Query: 229 GIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK-KSILSMAKKFSL 287
+ L +L L + + + W+I + R + + +++ + L +
Sbjct: 708 YWKPALKLLADLDALKCLHSQLILDDILWWQIRYVSRCLRYLDPENQLEHWLLRLEVLIT 767
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI---------AKLKIFLALHYN 338
+ N +++L + L + ++ L+ + +
Sbjct: 768 QLDPTERSKIAVNLQLPKESLERLKKLSQIELEIKQNLLKCTQLSEIVNVLRPYRLPNLI 827
Query: 339 NLTHQDTCFILQ-VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397
++ + +C I + + + W K PLTG+D+ G PG + IL ++
Sbjct: 828 LVSVRSSCEIRRTIWEYLTKWSKIQAPLTGNDLKVMGYKPGPQYKTILDRLLNATLDGEI 887
Query: 398 QLSQEDLHHLLRKL 411
S++D L+K+
Sbjct: 888 S-SRDDAEVFLKKI 900
>gi|254253161|ref|ZP_04946479.1| Poly(A) polymerase [Burkholderia dolosa AUO158]
gi|124895770|gb|EAY69650.1| Poly(A) polymerase [Burkholderia dolosa AUO158]
Length = 578
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 69/369 (18%), Positives = 135/369 (36%), Gaps = 35/369 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 125 LISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 183
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR---------------------------SDLITDG 102
+ + + ++ +++T R + G
Sbjct: 184 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPPAAADAEPPRRLKRDELDRRTHAVDASG 240
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 241 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRFR 300
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A G I+ + + + R++ E+ KLL + + L
Sbjct: 301 EDPVRMLRVVRFAAKLGF-EIEPHTREPIHALADLINNVPAARLFDEMLKLLLSGHALAC 359
Query: 222 IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 360 LQRLRKEGLHHGLLPLLDVV--LEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATLLW 417
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
+ + + ++ + L L +
Sbjct: 418 HDMRQRFEQYTAEGEFPVPALHRAMDDVLDMQTEKLAIHKRYSADMREIWGLQLRLEKRS 477
Query: 342 HQDTCFILQ 350
+ +L+
Sbjct: 478 GRSAMRLLE 486
>gi|119484314|ref|ZP_01618931.1| Phosphoesterase, RecJ-like protein [Lyngbya sp. PCC 8106]
gi|119457788|gb|EAW38911.1| Phosphoesterase, RecJ-like protein [Lyngbya sp. PCC 8106]
Length = 928
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 64/454 (14%), Positives = 126/454 (27%), Gaps = 64/454 (14%)
Query: 12 DSDLINILSLL----NKGEDKSCIVGGAVRDSLMNLSVQ-----DIDIATTI-------- 54
L+ +L+ L + + +VGGAVRD L+ + DID+
Sbjct: 474 APPLLELLNRLAKLTQQRGWQLYLVGGAVRDLLLADPEKTLLLTDIDLVVDGCHQSYENA 533
Query: 55 ----------LPDRVMRIFSKTRYKV-IPTSISYGTIKIICRKK------YFDITTLRSD 97
+ K+ + + T ++ + DI T R++
Sbjct: 534 ENNQQNSTNPPAVELASALQKSYANARLDVHGQFQTAALLWHNDPVLDSLWIDIATARTE 593
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGD-- 155
V + D RRDFTINAL + N
Sbjct: 594 FYPYPAANPEVEASSIRQDLYRRDFTINALALRLTQPYEGELLDFFGGMNDLQTRNIRVL 653
Query: 156 AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS-------- 207
+ +ED RI R RF G + G+ +S
Sbjct: 654 HANSFIEDPTRIYRAVRFAVRLGFEIEFQTKDYILYAINSGIYEKVQSENYSTRQRVPAL 713
Query: 208 ------EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-EISLDQLSQVIEAEQVFEWKI 260
E+ +L+A A+ + + I ++ L + ++++
Sbjct: 714 ETRLKSELKYILQAPYWKPALQLLGELKALRCIHPTLELNPELWRQIRLVDRGLRRFDPE 773
Query: 261 DSLLRFIVLISWQDKKSILSM----AKKFSLPREIRYFLISF-FNCNFNQKTLSIPEIKK 315
+L + + + A+ + L K + ++
Sbjct: 774 KTLTHWQMRLEVLIAHLAPQYRGDVAETLQFSLDSIERLQQLDSALAEVVKFMPECQLAS 833
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375
FY + L + + H ++ + W L G+D+ + G
Sbjct: 834 QFYRLLVPYDLPTLILIAVQSPRWVRH-------RIWQYLTQWWNIKPLLNGNDLKELGY 886
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
P + +L I+ + ++
Sbjct: 887 KPSPQFKQMLDDLLVATIDKEICDRKSA-EAFIQ 919
>gi|326317987|ref|YP_004235659.1| poly(A) polymerase [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323374823|gb|ADX47092.1| poly(A) polymerase [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 530
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 63/265 (23%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D ++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 39 PELVDRRATEVVRTLQQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKGLFRRAF 98
Query: 68 YKVIPTSISYGTIKIICR----KKYFDITTLR--------------------------SD 97
+ + ++ + +++T R
Sbjct: 99 I----IGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNAAAEQVSGNEKTSKAALAGMQHA 154
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFTINA+Y D + V+DY G+ D R + I+ IGD
Sbjct: 155 VDASGRVLRDNVWGPQDEDATRRDFTINAMYYDPATQVVVDYHKGIQDARKKVIRMIGDP 214
Query: 157 HHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214
R ED +RI+R RF A I+ ++++ L + R++ E+ KLL+
Sbjct: 215 ATRYREDPVRIIRAVRFAAKLAGVGFTIEPKTAAPLVQSQTLLADVPQSRMFDEMLKLLQ 274
Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ + I + G+ I+ +
Sbjct: 275 TGHAIATIEQLKKLGLSTGIYPLLD 299
>gi|84394000|ref|ZP_00992739.1| polyA polymerase [Vibrio splendidus 12B01]
gi|84375394|gb|EAP92302.1| polyA polymerase [Vibrio splendidus 12B01]
Length = 451
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 108/241 (44%), Gaps = 16/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN + +VGG VRD L+ +D DIAT P+++ +F R
Sbjct: 35 SDNALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKNLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R G + + D+ RRD
Sbjct: 92 -IGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSDEGMLLRDNVYGNVDEDAERRD 150
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+Y + + DY GG+ DL ++ I+ IGD R ED +R+LR RF A
Sbjct: 151 FTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMRFAAKLDF- 209
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+ D + LK + + R++ E KLL++ + L M +F+++F + E
Sbjct: 210 DIEEDTADPIEELAHLLKDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQMFPAIAE 269
Query: 241 I 241
Sbjct: 270 H 270
>gi|187929930|ref|YP_001900417.1| poly(A) polymerase [Ralstonia pickettii 12J]
gi|187726820|gb|ACD27985.1| poly(A) polymerase [Ralstonia pickettii 12J]
Length = 521
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 65/263 (24%), Positives = 114/263 (43%), Gaps = 36/263 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ + + S L + + IVGGAVRD L+ + +D D+AT PD+V +F ++R
Sbjct: 67 PKLLSRNAVKVTSTLQEAGYAAFIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSR 126
Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLR--------------------------SD 97
+ + + ++ +++T R
Sbjct: 127 I----IGRRFQIVHVTFYGGRDQEIIEVSTFRALVDAVDAEQVPAGKRVKRTELDHHTHA 182
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFT+NA+Y D V DY G+ D+R RT++ IGD
Sbjct: 183 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYDPADETVHDYHHGMEDMRARTLRMIGDP 242
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
H R ED +R+LR RF A G +ID D + + + + R++ E+ KLL +
Sbjct: 243 HTRYREDPVRMLRVVRFAAKTGF-DIDPDTRAPIAELGPLIHNVPAARLFDEMLKLLMSG 301
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ 239
+ ++ + G+ + + +
Sbjct: 302 HAWASLQELRKAGLHRGLLPLLD 324
>gi|218246793|ref|YP_002372164.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8801]
gi|218167271|gb|ACK66008.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8801]
Length = 420
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 77/411 (18%), Positives = 156/411 (37%), Gaps = 45/411 (10%)
Query: 29 SCIVGGAVRDSLMN--LSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
+C+VGGAVRD+L+N + D+D + +I + + + +++ +
Sbjct: 26 ACLVGGAVRDALLNCSRNYLDLDFVVPNGAVETARKIANNYQAGFVVLDEQRRIARVVFK 85
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLND 144
+ D + + D RRDFTINA+ D Q ++ID + G D
Sbjct: 86 QGTVDFA--------------QQEGENLEKDLRRRDFTINAIAYDVHQQQLIDPLKGSED 131
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
L+ R ++ + + + +D LR+LR +R I+ + +K +++ER
Sbjct: 132 LKKRLLRMVSLNN--LKDDPLRLLRAYRQAIQLNF-TIEEKTRETIRQLAPLIKKVAAER 188
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264
+ +E+ LL ++ M G+ F ++ E L QL +V + ++ ++
Sbjct: 189 VQTELGYLLSDSRGSQGLIDMAKDGLLNPWFKELTEDKLQQLLKVDQVVKLLRDQLAIDD 248
Query: 265 RFIVLISWQDKKS---------------------ILSMAKKFSLPR-EIRYFLISFFNCN 302
+ L D R +IR +
Sbjct: 249 FYQFLNYELDSYQDYSLIIQRAKLASLVLSVPEKAELELVNLKYSRADIRMITKALTYLP 308
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
++ S +++L++ + + + L + LAL L I + L P
Sbjct: 309 LLEENQSKMSLRELYFFFLEVGDVFPLIVILALARGILLTDILPLIYRYLDPKDQVAHPC 368
Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+TG D++K + P ++G +L + +I L++E+ +
Sbjct: 369 PLITGHDLIKQLNLKPSPQIGQLLTEIQIAYIEGKI-LTKEEALAFAETTV 418
>gi|186477240|ref|YP_001858710.1| poly(A) polymerase [Burkholderia phymatum STM815]
gi|184193699|gb|ACC71664.1| poly(A) polymerase [Burkholderia phymatum STM815]
Length = 538
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 72/371 (19%), Positives = 141/371 (38%), Gaps = 36/371 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P++V ++F + R
Sbjct: 86 LISRNAIRVTEGLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPEQVQKLFRRARI- 144
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-------------------------SDLITDGRY 104
+ + + ++ + +T R + GR
Sbjct: 145 ---IGRRFQIVHVQFGQEIIETSTFRALMDAPPADSPPPRRLKRDELDRRTHAVDASGRV 201
Query: 105 AKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILED 163
+ + D+ RRDFT+NA+Y D + + DY G+ D+R R ++ IGD R ED
Sbjct: 202 LRDNVWGEQHEDATRRDFTVNAMYYDPATQTVLDYHNGMADVRARLLRMIGDPATRYRED 261
Query: 164 YLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223
+R+LR RF A G ID + + + + R++ E+ KLL + + L +
Sbjct: 262 PVRMLRVVRFAAKLGF-EIDEATRAPITELADLINNVPAARLFDEMLKLLLSGHALACLQ 320
Query: 224 HMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK 283
+ G+ + + + L Q + + ++ R ++
Sbjct: 321 RLRKEGLHHGLLPLLDVV----LEQPHGEKFITLALNNTDARVRAGKPVSPGFLFATLLW 376
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
R +Y + + + + L K + ++ L + L +
Sbjct: 377 HDMQQRWQQYEANGEYPVPALHRAMDDVLDMQTEKLAIHKRFSSDMREIWGLQHR-LEKR 435
Query: 344 DTCFILQVLSD 354
L++L
Sbjct: 436 SGRSALKLLEH 446
>gi|289523846|ref|ZP_06440700.1| poly A polymerase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289502502|gb|EFD23666.1| poly A polymerase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 426
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 90/439 (20%), Positives = 161/439 (36%), Gaps = 59/439 (13%)
Query: 11 HDSDLIN--ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
D + IL L KG ++ IVGG VRD M D+DIAT+ P + +F + +
Sbjct: 3 KDKLAKSCDILRLFEKGGFEAYIVGGTVRDLAMGSPFGDVDIATSAKPMDIASLFPEAK- 61
Query: 69 KVIPTSISYG-TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
T I +IT L+ ++++ D RRDFTINA+
Sbjct: 62 ---KVGGDPLCTFVIPQDGWTVEITPLQGEVLS--------------EDLSRRDFTINAM 104
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D+ G + D GG+ DL N+ ++F G RI ED +R +R FRF + E + +
Sbjct: 105 ALDRFGDLYDPFGGMEDLVNKVLRFTGSPRERIEEDPVRCIRLFRFASTLREFEVSHSSM 164
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI----------------- 230
A ++ K + ERI EI K L P + + + G
Sbjct: 165 NAVRESLSLFKDVPLERIGKEIYKALRGS-PFTFLKLLEDTGFLASTLPCVYALRGVPQD 223
Query: 231 -FKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS------------ 277
DV E + L + + + + +L I ++
Sbjct: 224 PQFHPEGDVYEHTRLCLRYAEKITKRCDVRAAALFHDIAKPYTMKEEEERLRFIGHEKEG 283
Query: 278 ---ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
+ +++ P + S + + P+ YL K + L +
Sbjct: 284 GTLARDIMGQWAWPSYFVKNVSSLVRWHMVPLVSTAPKRIPRLYLEYGKAWLDGLFLLSY 343
Query: 335 LHYNNLTHQDTCFILQV---LSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQ 390
+ ++ + +I LS + + ++G DV+ I G +VG ++ +
Sbjct: 344 IDISSSNRDYSKWIENRQIALSCLFKLSEDEKLISGRDVMDILKIEEGPEVGRVIFEIYE 403
Query: 391 EWINSSFQLSQEDLHHLLR 409
+ ++ + +L +
Sbjct: 404 MMAKGDIRSREDAIDYLKK 422
>gi|145639648|ref|ZP_01795251.1| polyA polymerase [Haemophilus influenzae PittII]
gi|145271205|gb|EDK11119.1| polyA polymerase [Haemophilus influenzae PittII]
gi|309750618|gb|ADO80602.1| Poly(A) polymerase I [Haemophilus influenzae R2866]
Length = 452
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 83/419 (19%), Positives = 156/419 (37%), Gaps = 42/419 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ + ++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 32 FSRNALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 88
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D++R
Sbjct: 89 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 148
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + G+F+++F +
Sbjct: 209 MF-LEKPSEQPISELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 268 SPY-------------FTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPL 314
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 315 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGS 374
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + P F G D++ G G + + W F E L+++
Sbjct: 375 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQFSNG-EQREQLIQE 427
>gi|238650332|ref|YP_002916184.1| poly(A) polymerase [Rickettsia peacockii str. Rustic]
gi|238624430|gb|ACR47136.1| poly(A) polymerase [Rickettsia peacockii str. Rustic]
Length = 408
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 115/418 (27%), Positives = 176/418 (42%), Gaps = 71/418 (16%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLM----NLSVQ------------------- 46
ILSLL++ ++ ++GG VRD+L+ N + +
Sbjct: 10 IPSKGYRKILSLLSEKG-QARLIGGCVRDALLDLLHNKTNKEEFEGDMERRIAMYINVRE 68
Query: 47 --------------------------DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
DIDIAT + P V I S + K IPT + +GTI
Sbjct: 69 DSSTGSTYKLPLEASYPRDRLEKGSRDIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTI 128
Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYV 139
+ F+ITTLR D+ +GR+AKV+FT D+ D+ RRDFTINAL ++ DY
Sbjct: 129 TATLNNEKFEITTLRKDIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYF 188
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199
G DL+ + FIG+A RI EDYLRILRFFRF ++Y + +D A K GLK
Sbjct: 189 EGFKDLQQEKVVFIGEALDRIKEDYLRILRFFRFSSYYANQ-LDDGSFKACKALKDGLKT 247
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
LS ERI SE++K++ +K + M+ GI + IF +Q + Q + + +
Sbjct: 248 LSRERIKSEMDKIIVSKRAAQILKAMFEIGILELIF-SIQNYEIKFFEQANDFKLELVTR 306
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
LL ++ L + + + ++S N + K +
Sbjct: 307 YALLLYCQKDLN-------LKVFLDWKFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNY 359
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
K + A L H + ++ P F + G+D++ I
Sbjct: 360 --------KEYLLAARIIGKLNHSQVKEFILKYDALLR---PKFQVNGNDLLNMNIEK 406
>gi|302879356|ref|YP_003847920.1| poly(A) polymerase [Gallionella capsiferriformans ES-2]
gi|302582145|gb|ADL56156.1| poly(A) polymerase [Gallionella capsiferriformans ES-2]
Length = 453
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 75/384 (19%), Positives = 133/384 (34%), Gaps = 40/384 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ L K+ +VGGAVRD L++ +D D+AT P+ V R+F ++R
Sbjct: 41 AKRVTDGLQAAGFKAFVVGGAVRDLLLDKIPKDFDVATDATPEEVKRVFRRSRI----IG 96
Query: 75 ISYGTIKIICRKKYFDITTLRS-------DLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ ++ ++ T R GR + D + D+ RRDFT NAL
Sbjct: 97 RRFRLVHVMFGEELVEVATFRCMIDTEDAQTDAHGRLLRDNEFGDQEQDAARRDFTANAL 156
Query: 128 YADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ D ++ DY G D RN ++ IGD R ED +R+LR R A G +D
Sbjct: 157 FYDPTTQEIYDYHQGYQDTRNGVLRIIGDPLVRYREDPVRMLRAVRLSAKLGI-ALDPVT 215
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------- 238
+ K L + R+ E+ K+L + + I + + + +
Sbjct: 216 AAPIAQLKSLLDNVPEARMLDEVLKMLLSGRSVECIQQLRKMELHHGLLPLLDVIMEQPM 275
Query: 239 --QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS-----------ILSMAKKF 285
+ I L + Q L ++ + + +A
Sbjct: 276 GEKFIMLALKNTDERLSQEKSVSPAFLFACLLWHEVLSVWNGLVAKGERPLGAMHIAMDE 335
Query: 286 SLPREIRYFLISFFNC------NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
L R+ + I + Q+ ++ + L A L +N
Sbjct: 336 VLARQKKKLAIPHRHDAVMKEIWLMQQRFDQRAGQRPYRLLEQPRFRAGFDFLLLRCASN 395
Query: 340 LTHQDTCFILQVLSDIIHWKKPLF 363
D D ++
Sbjct: 396 EVDNDLGLWWDEFQDASEARRQEM 419
>gi|254410186|ref|ZP_05023966.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Microcoleus chthonoplastes PCC 7420]
gi|196183222|gb|EDX78206.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Microcoleus chthonoplastes PCC 7420]
Length = 413
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 74/409 (18%), Positives = 148/409 (36%), Gaps = 42/409 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKIIC 84
++C+VGGAVRD+L+ D+D +V R + + + + +++
Sbjct: 23 QACLVGGAVRDALLRRQADYLDLDFVVPHEAVKVARKLASHYKAGFVVLDEARQIARVVF 82
Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYVGGLN 143
DI + D RRDFTINA+ + Q ++ID + G+
Sbjct: 83 DTATVDIA--------------QQEGETLETDLYRRDFTINAIAYNPQTQQIIDPLQGVA 128
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203
D R I+ + A+ + +D LR+LR +R A G I+S + L +++E
Sbjct: 129 DCRAGIIRMVSPAN--LQDDPLRLLRAYRQAAQLGF-TIESTTQSTIRQLAPLLANIAAE 185
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
R+ E+N LL++ + + + F D + + Q++ A V +L
Sbjct: 186 RVQVELNYLLQSPQGTPWLTAAWQDQLLHHWFPDTKADNFTQIAATDNAASVLAQTWQTL 245
Query: 264 -----------------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC--NFN 304
L + + + + + + R ++
Sbjct: 246 ASQLKTPVSGKSLSWLSLAKLTNVLPSEVEPAQAKLLQLKYSRAEIRAVLIMIQYLPQLL 305
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
S +++ ++ + + LA+ + L+ P
Sbjct: 306 SHVTSPMSLREQYFFFQAVGSVFPALAVLAVAEGVSVESIAPLTNRYLNPEDQVSHPTPL 365
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+TG D+++ +PP ++G +L + I E L ++LI
Sbjct: 366 VTGHDLIQQLKLPPSPQIGELLTEIQIARIEGKVSTRDEAL-AFAKQLI 413
>gi|90023016|ref|YP_528843.1| poly(A) polymerase [Saccharophagus degradans 2-40]
gi|89952616|gb|ABD82631.1| poly(A) polymerase [Saccharophagus degradans 2-40]
Length = 443
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 17/230 (7%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
+ L + ++ +VGG VRD L++ +D D+AT+ P++V ++F R +
Sbjct: 39 IEQLQRAGYEAYLVGGGVRDLLLDADPKDFDVATSATPEQVRKVFRNARI----IGKRFR 94
Query: 79 TIKIICRKKYFDITTLRSDLI-----------TDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ ++TT R G + D K+D++RRDFTINAL
Sbjct: 95 IVHVRFGREIIEVTTFRGSHTDARSSRDASQSDTGVLLRDNVYGDIKSDAMRRDFTINAL 154
Query: 128 YADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y + G+V+D+ GGL DL+NRTI+ IGD R ED +R+LR RF G NID
Sbjct: 155 YYNPINGEVLDFCGGLKDLKNRTIRIIGDPEERYKEDPVRLLRAARFAGKLGF-NIDPVT 213
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ L + S R++ E+ KL + + + + +FK +F
Sbjct: 214 EKPIREHADYLAHIPSARLFEEVLKLFMSGQATATLNKLRDYDLFKYLFP 263
>gi|91781890|ref|YP_557096.1| Poly(A) polymerase [Burkholderia xenovorans LB400]
gi|91685844|gb|ABE29044.1| Poly(A) polymerase [Burkholderia xenovorans LB400]
Length = 529
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 67/377 (17%), Positives = 137/377 (36%), Gaps = 35/377 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R
Sbjct: 78 LISRNAIRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRARI- 136
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-------------------------SDLITDGRY 104
+ + + ++ + +T R + GR
Sbjct: 137 ---IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAPPARRLKRDELDRRTHAVDASGRV 193
Query: 105 AKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILED 163
+ + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R ED
Sbjct: 194 LRDNVWGEQHEDATRRDFTINAMYYDPATQTVLDYHNGMADMRARLLRMIGDPATRYRED 253
Query: 164 YLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223
+R+LR RF A I+ + + + R++ E+ KL+ + + L +
Sbjct: 254 PVRMLRVVRFAAKLDF-EIEDSTREPIAGMADLINNVPAARLFDEMLKLMLSGHALACLK 312
Query: 224 HMYNGGIFKEIFLD----VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279
+ G+ + +++ ++ + + + L + +
Sbjct: 313 RLRQEGLHHGLLPLLDVVLEQPIGEKFITLALNNTDARVRAGKPVSPGFLFATLLWHDVQ 372
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+KF E + I K F ++ +L++ +
Sbjct: 373 QRWQKFEANGEYPVPALHRAMDEVLDMQTEKLAIHKRFSSDMREIWGLQLRLEKRSGRSA 432
Query: 340 LTHQDTCFILQVLSDII 356
+ + ++
Sbjct: 433 VKLLEHQRFRAGYDFLL 449
>gi|90406862|ref|ZP_01215054.1| Poly(A) polymerase (PAP) (Plasmid copy number protein)
[Psychromonas sp. CNPT3]
gi|90312099|gb|EAS40192.1| Poly(A) polymerase (PAP) (Plasmid copy number protein)
[Psychromonas sp. CNPT3]
Length = 448
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 61/262 (23%), Positives = 110/262 (41%), Gaps = 19/262 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + + +L L+ ++ +VGGAVRD L+ L +D DI T P+ + +F R
Sbjct: 19 DDNALKVLYRLHNAGFRALLVGGAVRDLLLGLKPKDFDITTNATPEEIKALFRNCRL--- 75
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW-------------KADSL 118
+ I+ ++ ++ T R K + + D+
Sbjct: 76 -IGRRFRLAHILFGREVIEVATFRGPHDQQSAQDKQKVKQSQGGMLLRDNVYGSLEEDAE 134
Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NALY D + D+ G+ DL++R + IGD R ED +R+LR RF A
Sbjct: 135 RRDFTVNALYYDIADFALYDFCNGMQDLKDRKLTLIGDPDVRYREDPVRMLRAIRFTAKL 194
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
I + + L+ + + R + E+ KLL + L + + + +F
Sbjct: 195 D-LEISPECAEPIRRLANLLQDIPAARHFDEVIKLLLSGQGLQTYRLLKEYKLLQVLFPI 253
Query: 238 VQEISLDQLSQVIEAEQVFEWK 259
+ + D + + + + +
Sbjct: 254 LFKDGEDDTAHAMIEKALIDTD 275
>gi|145630638|ref|ZP_01786417.1| polyA polymerase [Haemophilus influenzae R3021]
gi|144983764|gb|EDJ91214.1| polyA polymerase [Haemophilus influenzae R3021]
Length = 452
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 83/419 (19%), Positives = 155/419 (36%), Gaps = 42/419 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ + ++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 32 FSRNALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 88
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D+ R
Sbjct: 89 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 148
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + G+F+++F +
Sbjct: 209 MF-LEKPSEQPISELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 268 SPY-------------FTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPL 314
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 315 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRTLAAPRRHTAVIRDIWFLQLQLLKRTGS 374
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + P F G D++ G G + + W F E L+++
Sbjct: 375 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQFSNG-EQREQLIQE 427
>gi|62185370|ref|YP_220155.1| putative poly(A) polymerase [Chlamydophila abortus S26/3]
gi|62148437|emb|CAH64205.1| putative poly(A) polymerase [Chlamydophila abortus S26/3]
Length = 428
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 82/412 (19%), Positives = 150/412 (36%), Gaps = 37/412 (8%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
++++ L K K+ IVGG +RD L+N + +D DI+T+ P+ + +F
Sbjct: 41 FSPHALSVVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNC---- 96
Query: 71 IPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I + I + +++T R D K + D LRRDFTIN L+
Sbjct: 97 ILVGKRFRLAHIRFSNQIIEVSTFRSGSADEDCLITKDNLWGTAEEDVLRRDFTINGLFY 156
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + +IDY GG++DL NR ++ IGD R +D +R+LR + A +D L
Sbjct: 157 DPTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILARA-HFTVDPKTLE 215
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
A + + L S R++ E+ K+L + K L++ +D+ +
Sbjct: 216 ALQECRYELIKSSQARVFEELIKMLGSGVSSQFFKL-----TAKYQILEILFPYMDKAFR 270
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL-------PREIRYFLISFFNC 301
+ + + + +L ++ + MA + +Y +S +
Sbjct: 271 LNKTLEEQTFACLDVLDRHIVNKKHNYDRHQLMAIFLFPIVNFNVRYKHRQYPSLSLTSV 330
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN--LTHQDTCFILQVLSDIIHWK 359
K F K I I + + + F + + + +
Sbjct: 331 FDYIKNFLGKFFADSFTSCSKKNFILTALILQMQYRLTPLVPTKKIHFFNRKFLNHVRFS 390
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+ L L ++ P L WI ++L
Sbjct: 391 EALSLL---EIRSLVYP-------KLDKILAAWIKHY------QALQFKKEL 426
>gi|300690555|ref|YP_003751550.1| poly(A) polymerase I [Ralstonia solanacearum PSI07]
gi|299077615|emb|CBJ50250.1| poly(A) polymerase I [Ralstonia solanacearum PSI07]
Length = 515
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 69/375 (18%), Positives = 133/375 (35%), Gaps = 38/375 (10%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++R
Sbjct: 63 PKLLSRNAVKVTSTLQEAGYDAFIVGGAVRDLLLGIQPKDFDVATNATPEQVEALFRRSR 122
Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLR--------------------------SD 97
+ + + + +++T R
Sbjct: 123 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHA 178
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFT+NA+Y + V DY G+ D+R R ++ IGD
Sbjct: 179 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHHGMEDMRARLLRMIGDP 238
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
H R ED +R+LR RF A G +ID + + + + R++ E+ KLL +
Sbjct: 239 HTRYREDPVRMLRVVRFAAKTGF-DIDPATRAPIAELGPLIHNVPAARLFDEMLKLLMSG 297
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK 276
+ ++ + G+ + + + Q+ D ++ +S
Sbjct: 298 HAWASLQELRKAGLHSGLLPLLDVA--LEQPMGQRFVQLALDNTDERVKAGKPVSPGFLF 355
Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
+ L R + + + K +
Sbjct: 356 ASLMWHHVLEHWNRRRAAGEPLIPALHTAMDEVLDRQTEQLAIQRRFTADMKEIWSMQPR 415
Query: 337 YNNLTHQDTCFILQV 351
+ T + +L++
Sbjct: 416 FEKRTGRMPYRLLEL 430
>gi|194290641|ref|YP_002006548.1| poly(a) polymerase i [Cupriavidus taiwanensis LMG 19424]
gi|193224476|emb|CAQ70487.1| poly(A) polymerase I [Cupriavidus taiwanensis LMG 19424]
Length = 507
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 78/442 (17%), Positives = 153/442 (34%), Gaps = 68/442 (15%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ + + S L + ++ IVGGAVRD L+ + +D D+AT P++V +F ++R
Sbjct: 38 PTLLSRNAVKVTSTLQQAGYQAYIVGGAVRDLLLGIKPKDFDVATNATPEQVQSLFRRSR 97
Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLR--------------------------SD 97
+ + + + +++T R
Sbjct: 98 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAIASETLPEGRRLKRAELDSKTHA 153
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFTINA+Y D + DY G+ D+R RT++ IGD
Sbjct: 154 IDASGRVLRDNVWGSQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDP 213
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R ED +R+LR RF A G +ID + + + S R++ E+ KLL +
Sbjct: 214 ATRYREDPVRMLRVVRFAAKTGF-DIDEATRHPIAGLAELIHNVPSARLFDEMLKLLMSG 272
Query: 217 NPLNAIVHMYNGGIFKEIFL----DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW 272
+ ++ + G+ K + +++ + Q+ + + L +
Sbjct: 273 HAWASLQELRKAGLHKGLLPLLDVALEQPMGQRFVQLALDNTDRRVQAGKPVSPGFLFAA 332
Query: 273 QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
+L + E ++ + +K I++ F + + +
Sbjct: 333 LLWHHVLQRWTQLREEGEHAIAALNSAMDSVLEKQTGQLAIQRRFVTDMRDIWGMQPRFE 392
Query: 333 LALHYNNLTHQDTCFILQVLSDI-IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
+ ++ + + + P
Sbjct: 393 KRVGRMPFRLLESPRFRAGYDFLVLRCQSGELP---------------------EELAAW 431
Query: 392 WINSSF----QLSQEDLHHLLR 409
W + F +EDL +R
Sbjct: 432 W--NDFQNAEPNEREDLIDAVR 451
>gi|81299785|ref|YP_399993.1| CBS [Synechococcus elongatus PCC 7942]
gi|81168666|gb|ABB57006.1| CBS [Synechococcus elongatus PCC 7942]
Length = 909
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 82/457 (17%), Positives = 154/457 (33%), Gaps = 60/457 (13%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMN-----LSVQDIDIATT---- 53
++ +W L + +VGG VRD + L + DID+
Sbjct: 462 RLIPAQW---ELLETAAHFAEERGWHLYLVGGGVRDLFLAPSDAPLLISDIDLVVDGFHR 518
Query: 54 ----ILPDRVMRIFSKTRYKV-IPTSISYGTIKIICRKK------YFDITTLRSDLITDG 102
+ ++ + + + T ++ + + DI T R++
Sbjct: 519 ALTEAAGVELAQLLRDRYPQARLEVHGRFQTAALLWHEDPVFQSLWVDIATARTEFYPYP 578
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHH 158
V + D RRDFTINAL G+++D+ GG DL R ++ + +
Sbjct: 579 AANPEVEASSIRQDLYRRDFTINALAIRLTEPHAGELLDFFGGRLDLEARQVRVLHV--N 636
Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASI----------KAKKGLKILSSERIWSE 208
+ED RI R RF G + + + G+ R+ +E
Sbjct: 637 SFIEDPTRIFRAVRFAVRLGFAIEEQTRRQIRYALDSGVYQRTQGENGVTPALQTRLRAE 696
Query: 209 INKLLEAKNPLNAIVHMY--------NGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ +LEAK L A+ + + + L+ Q D+LS+ + + K
Sbjct: 697 LQLILEAKYWLPALRELGSLQAFRCLHSDCWWTRSLEAQLRCCDRLSRRWQQQAHPSLKP 756
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+ +A++ LP+++ L + L ++ Y
Sbjct: 757 ILPWLLRLQSLLTSLPEPGPIAQRLQLPQDVIQRLQQWPCAIAQLTQLDTAQLPSQLYRQ 816
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKK 380
L + A+ + + ++ Q L + PL+G D+ K G PG +
Sbjct: 817 LANYDPITLLLAAAVLPRSSRRVISRYLWQWL-------PLVLPLSGHDLKKLGYRPGPQ 869
Query: 381 VGNILVHCKQEWINSSF------QLSQEDLHHLLRKL 411
IL + ++ Q+ LH L +
Sbjct: 870 FRQILEALQAAVLDGQLLAGTDDTARQQALHWLRDRY 906
>gi|320536493|ref|ZP_08036527.1| poly(A) polymerase [Treponema phagedenis F0421]
gi|320146702|gb|EFW38284.1| poly(A) polymerase [Treponema phagedenis F0421]
Length = 399
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 66/247 (26%), Positives = 107/247 (43%), Gaps = 10/247 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D++ + I+ L+ + IVGGAVRD L+ +D DIAT+ P ++ ++F +R
Sbjct: 33 DAEALKIIQTLHSAGYEGFIVGGAVRDLLLGRIPKDFDIATSAEPSKIKKLFRNSRI--- 89
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+ + I K ++I+T RS + + D RRDFTINALY D
Sbjct: 90 -IGKRFRLVHIFYGPKIYEISTFRSIEDG----SVGNKFGTIEEDVQRRDFTINALYYDP 144
Query: 132 QGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+IDYVGGL+DLR ++ I + ED +R+LR ++ + I
Sbjct: 145 IKNLIIDYVGGLHDLRKNRLRAIIPLKNIFSEDPVRMLRAIKYSI-LAKAKIPFLLSCRL 203
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L+ S R+ E+NK+ + I + + +F + D
Sbjct: 204 HRDTSLLEYCSPSRLTEELNKIFHSGYSKPIIERLLHYELFLYLQPSAYSFIQDNTKFAE 263
Query: 251 EAEQVFE 257
FE
Sbjct: 264 CFLSGFE 270
>gi|145589945|ref|YP_001156542.1| poly(A) polymerase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145048351|gb|ABP34978.1| poly(A) polymerase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 467
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD ++ + +D D+AT P++V R+F K R
Sbjct: 41 LLSKNAVKVTHTLQQAGYEAFIVGGAVRDLVLGIEPKDFDVATNATPEQVQRLFRKARL- 99
Query: 70 VIPTSISYGTIKIIC----RKKYFDITTLR-------SDLITDGRYAKVVFTRDWKADSL 118
+ + + + +++T R + GR + D+
Sbjct: 100 ---IGRRFQIVHVTFFGKGHPEIIEVSTFRALLDNAGDHVAESGRILRDNVWGSQGEDAA 156
Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTINA+Y D + + DY GG+ D++ +T++ IGD R ED +R+LR RF A
Sbjct: 157 RRDFTINAMYYDPSTETVLDYHGGMADMQKKTLRMIGDPAKRYREDPIRMLRAIRFAAKT 216
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
G +D + K L + S R++ EI KLL + AI +
Sbjct: 217 GF-ALDPNTRSPIAKLGTLLHDVPSARLFDEILKLLMSGYSWAAIQGL 263
>gi|116688781|ref|YP_834404.1| poly(A) polymerase [Burkholderia cenocepacia HI2424]
gi|254246247|ref|ZP_04939568.1| Poly(A) polymerase [Burkholderia cenocepacia PC184]
gi|116646870|gb|ABK07511.1| poly(A) polymerase [Burkholderia cenocepacia HI2424]
gi|124871023|gb|EAY62739.1| Poly(A) polymerase [Burkholderia cenocepacia PC184]
Length = 518
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 69/371 (18%), Positives = 134/371 (36%), Gaps = 37/371 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 67 LISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-----------------------------SDLIT 100
+ + + + +++T R +
Sbjct: 126 ---IGRRFQIVHVQFGQDLIEVSTFRALVDAPPEAAAATAEPPRRLKRDELDRRTHAVDA 182
Query: 101 DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHR 159
GR + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 183 SGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATR 242
Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219
ED +R+LR RF A G I+ + + + R++ E+ KLL + + L
Sbjct: 243 FREDPVRMLRVVRFAAKLGF-EIEPHTREPIHALADLINNVPAARLFDEMLKLLLSGHAL 301
Query: 220 NAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 302 ACLQRLRKEGLHHGLLPLLDVV--LEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATL 359
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ + + ++ + L L
Sbjct: 360 LWHDMRQRFEQYTAAGEIPVPALHRAMDDVLDMQTEKLAIHKRYSADMREIWGLQLRLEK 419
Query: 340 LTHQDTCFILQ 350
+ + +L+
Sbjct: 420 RSGRSAMRLLE 430
>gi|289209207|ref|YP_003461273.1| poly(A) polymerase [Thioalkalivibrio sp. K90mix]
gi|288944838|gb|ADC72537.1| poly(A) polymerase [Thioalkalivibrio sp. K90mix]
Length = 461
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 19/244 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + + +L L ++C+VGG VRD L+ +D DIAT PD+V +F R
Sbjct: 32 DDNALKVLYRLRDAGYRACLVGGGVRDLLLGREPKDFDIATDATPDQVRGLFRNCRL--- 88
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ ++ ++ ++ T R+ D GR + + D++R
Sbjct: 89 -IGRRFRLAHVLFGREVIEVATFRAPHDEDDDNDGQVALSEEGRILRDNRYGTIEQDAVR 147
Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDA-HHRILEDYLRILRFFRFFAHY 177
RDF++NALY D V+DY GG+ DLR ++ IGD R+ ED +R+LR RF A
Sbjct: 148 RDFSVNALYYDIDDFSVLDYTGGVEDLREGVLRLIGDDVETRLREDPVRMLRAVRFSAKL 207
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G I + + ++ ++ R++ E+ KL + + + + G+F +F +
Sbjct: 208 G-LRIAPEVEAGIRELAGLMQTVAPARLFDEVIKLFHSGAAVTCLDELERFGLFAPMFPE 266
Query: 238 VQEI 241
E
Sbjct: 267 AAEC 270
>gi|148827216|ref|YP_001291969.1| polyA polymerase [Haemophilus influenzae PittGG]
gi|148718458|gb|ABQ99585.1| polyA polymerase [Haemophilus influenzae PittGG]
Length = 452
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 84/419 (20%), Positives = 156/419 (37%), Gaps = 42/419 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 32 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 88
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D+ R
Sbjct: 89 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 148
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + G+F+++F +
Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPTL 267
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 268 SAY-------------FTEKEDSFAERMIVTALSSTDERVADKLRINPAFLFAAFFWYPL 314
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 315 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGS 374
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + P F G D++ G G + + W F E L+++
Sbjct: 375 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQFSNG-EQREQLIQE 427
>gi|170732080|ref|YP_001764027.1| poly(A) polymerase [Burkholderia cenocepacia MC0-3]
gi|169815322|gb|ACA89905.1| poly(A) polymerase [Burkholderia cenocepacia MC0-3]
Length = 518
Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 69/371 (18%), Positives = 134/371 (36%), Gaps = 37/371 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 67 LISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-----------------------------SDLIT 100
+ + + + +++T R +
Sbjct: 126 ---IGRRFQIVHVQFGQDLIEVSTFRALVDAPPEAAAATAEPPRRLKRDELDRRTHAVDA 182
Query: 101 DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHR 159
GR + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 183 SGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATR 242
Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219
ED +R+LR RF A G I+ + + + R++ E+ KLL + + L
Sbjct: 243 FREDPVRMLRVVRFAAKLGF-EIEPHTREPIHALADLINNVPAARLFDEMLKLLLSGHAL 301
Query: 220 NAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 302 ACLQRLRKEGLHHGLLPLLDVV--LEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATL 359
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ + + ++ + L L
Sbjct: 360 LWHDMRQRFEQYTAAGEIPVPALHRAMDDVLDMQTEKLAIHKRYSADMREIWGLQLRLEK 419
Query: 340 LTHQDTCFILQ 350
+ + +L+
Sbjct: 420 RSGRSAMRLLE 430
>gi|118602492|ref|YP_903707.1| poly(A) polymerase [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567431|gb|ABL02236.1| poly(A) polymerase [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 379
Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 69/282 (24%), Positives = 133/282 (47%), Gaps = 13/282 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D D + +++++NK K+ +VGG VRD L+NL +D DIAT P++V ++F ++R
Sbjct: 14 LLDKDALRVINVINKAGFKAYLVGGCVRDLLLNLKPKDFDIATNAKPEQVHKLFKRSRL- 72
Query: 70 VIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTIN 125
+ + ++ +K+ ++ T RS + + V+ + + D +RRDF IN
Sbjct: 73 ---IGRRFRLVHVVFSARKFIEVATFRSGKVQTAKNGVVIRDNCYGNIEDDVVRRDFNIN 129
Query: 126 ALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
ALY D + ++IDYVGGL D++ + + IG+ R +D +R++R RF E +
Sbjct: 130 ALYYDIKTQEIIDYVGGLEDIKAKEMHIIGNPGIRFEQDPVRMIRAIRFQTKL-EFQLSY 188
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ A + L +S+ R++ E KL + + G+ K +F +
Sbjct: 189 EIKSAIFEQASLLGNISTVRLYEECIKLFHNEYGFEVYERLEKYGLLKYLFKQTHKNEFI 248
Query: 245 Q---LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK 283
+ L+ ++ L + ++ ++ L +
Sbjct: 249 KKALLNTSDRIKKNQSVTPVFLFAVFLWRAYNERFIALKKKQ 290
>gi|67922052|ref|ZP_00515568.1| CBS:Polynucleotide adenylyltransferase [Crocosphaera watsonii WH
8501]
gi|67856268|gb|EAM51511.1| CBS:Polynucleotide adenylyltransferase [Crocosphaera watsonii WH
8501]
Length = 904
Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 79/446 (17%), Positives = 152/446 (34%), Gaps = 47/446 (10%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLM---NLSV--QDIDIATTIL-- 55
S+ + W L I IVGGAVRD L+ N V QDID+
Sbjct: 465 SLKKSTW---KLLEMIAKEAEDQGWHLYIVGGAVRDLLLTNNNQKVSLQDIDLVVDGFHR 521
Query: 56 ------PDRVMR-IFSKTRYKVIPTSISYGTIKIICRKK------YFDITTLRSDLITDG 102
+ I K + + T ++ K + DI T R++
Sbjct: 522 SADVGAGVELASTIQKKYPNCRLSVHGEFQTAALLWHKDPEFGSLWIDIATSRTEFYPYP 581
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHH 158
V + + D RRDFTINAL ++G+++D+ GGL DL+ + ++ + +
Sbjct: 582 AANPEVESSSIRQDLYRRDFTINALAVRLTPPREGELLDFFGGLLDLKGKEVRVLHA--N 639
Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218
+ED RI R RF + G+ + K
Sbjct: 640 SFIEDPTRIYRAVRFAVRLNFDIEPQTETYIRYAIESGIYDKLKLKNHVTPALTTRLKAE 699
Query: 219 LNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI 278
I + + L SL L + + W+I R++ + +
Sbjct: 700 SKYI--LEANYWKPALQLLSDLDSLKCLHNQVILDDKIWWQIRCASRWLRYLDPDNNIGH 757
Query: 279 LSMAKKFSLPREIRYFLISF-FNCNFNQKTLSIPEIKKLFYLYGDKVMIA---------- 327
+ + + + N + + +L + + Y ++++
Sbjct: 758 WLIRLEILISKINPQERKQLALNLHLPKDSLERIDKDNIIYSEIQELLLKCNKISDKYKQ 817
Query: 328 --KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385
+ K+ + + ++ I + + W K PL G+D+ + G PG + +L
Sbjct: 818 LYRNKLADLILVAVNSKKEVRRI--IWQYLTQWSKIQAPLNGNDLKRMGYKPGPQYKLVL 875
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKL 411
++ + QE +++++
Sbjct: 876 DRLLALTLDGEIKTQQEAAI-IVKQM 900
>gi|120610653|ref|YP_970331.1| poly(A) polymerase [Acidovorax citrulli AAC00-1]
gi|120589117|gb|ABM32557.1| poly(A) polymerase [Acidovorax citrulli AAC00-1]
Length = 531
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 63/265 (23%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D ++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 39 PELVDRRATEVVRTLQQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKGLFRRAF 98
Query: 68 YKVIPTSISYGTIKIICR----KKYFDITTLR--------------------------SD 97
+ + ++ + +++T R
Sbjct: 99 I----IGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNAAAEQVSGNEKTSRAALAGMQHA 154
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFTINA+Y D + V+DY G+ D R + I+ IGD
Sbjct: 155 VDASGRVLRDNVWGPQDEDATRRDFTINAMYYDPATQVVVDYHKGIQDARKKVIRMIGDP 214
Query: 157 HHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214
R ED +RI+R RF A I+ ++++ L + R++ E+ KLL+
Sbjct: 215 ATRYREDPVRIIRAVRFAAKLAGVGFTIEPKTAAPLVESQALLADVPQSRMFDEMLKLLQ 274
Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ + I + G+ I+ +
Sbjct: 275 TGHAIATIEQLRKLGLATGIYPLLD 299
>gi|217077799|ref|YP_002335517.1| polyA polymerase family protein [Thermosipho africanus TCF52B]
gi|217037654|gb|ACJ76176.1| polyA polymerase family protein [Thermosipho africanus TCF52B]
Length = 859
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 79/399 (19%), Positives = 136/399 (34%), Gaps = 24/399 (6%)
Query: 15 LINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
++N+L L+ + +VGG VRD L+ L DIDI + SK
Sbjct: 452 ILNLLRLIGSYGEDKKMPVYVVGGFVRDLLLGLENYDIDIVVEGNGLEFAKYASKQLGAK 511
Query: 71 IPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + T + DI T R++ V K D RRDFTINA+
Sbjct: 512 MVEHEKFLTASLFFKDGFRIDIATARTEYYEKPADLPQVDISTIKKDLYRRDFTINAMAI 571
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSD-G 186
K + D R + + +ED RI+R RF +G K +
Sbjct: 572 KLNTKEFGLLYDFFDSRKDLKEGLIRVLHKLSFVEDPTRIIRAVRFEQRFGFKIEEETLR 631
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-----EI 241
++ L+ +S +RI E+ K+LE + PLNAI + I K IF E
Sbjct: 632 ILNETLNGGFLEKVSGQRIRQELEKILEEREPLNAIKRLAQLKILKHIFPKTYFTSVMEK 691
Query: 242 SLDQLSQVIEAEQVFEWKID---SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
L+ L + + KI+ SLLR ++ D +
Sbjct: 692 KLENLFNNLRIIKELYKKINVFYSLLRILLEYYDIDTLKKVIKKYGIPKKFIDEIKATET 751
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
++ + G I + + ++ +V S
Sbjct: 752 RLPPLLNMIKYKIRFSDIYKVIGKPSAETTAHIMSYIDDEDSKEYFVEYLKRVFST---- 807
Query: 359 KKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSS 396
++G+ + K + ++G ++ +++
Sbjct: 808 ---KLSISGNYLKEKMNVKNSVEIGKVMNELYCRKLDNP 843
>gi|114775546|ref|ZP_01451114.1| tRNA nucleotidyltransferase [Mariprofundus ferrooxydans PV-1]
gi|114553657|gb|EAU56038.1| tRNA nucleotidyltransferase [Mariprofundus ferrooxydans PV-1]
Length = 468
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 66/446 (14%), Positives = 143/446 (32%), Gaps = 56/446 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+++ + L + +VGG VRD +++++ +D D+ L + + + +
Sbjct: 20 PEILFLCRHLATAGGDAWLVGGCVRDLMLHINPKDYDLEVYGLTEAALSDALQQLGRCEM 79
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYA----KVVFTRDWKADSLRRDFTINALY 128
+G K+ R+ D+ R++ + + + +LRRDFTINA+
Sbjct: 80 VGKQFGVHKLWFRQMEIDVALPRTESKSGSGHRGFVVHTDPHLTPEIATLRRDFTINAMM 139
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + + G + I ED LR LR +F A ++ +
Sbjct: 140 YDPLQHRLLDLHGGQSDLDEGILR--HVSPAFAEDPLRPLRAMQFAAR-FRFHLAPETAA 196
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------- 241
L + RIW E K A++P ++ +++ + + ++Q +
Sbjct: 197 MCRTLVAEADTLPASRIWIEWQKWSHARSPSCGLIALHD-SGWLACYPELQALQQCPQDP 255
Query: 242 -SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-- 298
+ + QV + + + + ++ ++ P
Sbjct: 256 RWHPEGDVWVHTLQVVDQAAEMAKKHHLSRPDREHLLFAALCHDLGKPETTVQQPDGRIG 315
Query: 299 ----------FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
Q+ + I K+ + + A L +
Sbjct: 316 SPGHSKAGVPLTRRLLQRMHAPGAIGKIVVPLVQEHITHLFGDPTARAVRRLAWRLQPAH 375
Query: 349 LQVLSDI----IHWKKPLFP------------------------LTGDDVVKYGIPPGKK 380
+++ + + P P + GD +++ GI PG
Sbjct: 376 IELWEMLVEADASGRAPAPPSRPALPWLQLAQSMQQHRQAAARIVDGDMLMQLGIEPGPV 435
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHH 406
+G +L Q +N F +Q
Sbjct: 436 LGEMLAKAYQAQLNGEFNDAQGARLW 461
>gi|16272037|ref|NP_438236.1| polyA polymerase [Haemophilus influenzae Rd KW20]
gi|1172043|sp|P44439|PCNB_HAEIN RecName: Full=Probable poly(A) polymerase; Short=PAP
gi|1573011|gb|AAC21741.1| poly(A) polymerase (pcnB) [Haemophilus influenzae Rd KW20]
Length = 452
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 84/419 (20%), Positives = 156/419 (37%), Gaps = 42/419 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 32 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 88
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D+ R
Sbjct: 89 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 148
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + G+F+++F +
Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 268 SAY-------------FTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPL 314
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 315 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGS 374
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + P F G D++ G G + + W F E L+++
Sbjct: 375 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQFSNG-EQREQLIQE 427
>gi|319792304|ref|YP_004153944.1| poly(a) polymerase [Variovorax paradoxus EPS]
gi|315594767|gb|ADU35833.1| poly(A) polymerase [Variovorax paradoxus EPS]
Length = 543
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 37/263 (14%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D N+++ L + ++ +VGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 40 LVDERAKNVVTTLQQAGYEAYVVGGAVRDLLLGLRPKDFDVATNATPEQVKSLFRRAFI- 98
Query: 70 VIPTSISYGTIKIICR----KKYFDITTLRSDLIT------------------------- 100
+ + ++ + +++T R+ + +
Sbjct: 99 ---IGRRFRIVHVVYGRGREHEVIEVSTFRAYMDSAAAEQVAGNERTSKGELASMKHAVD 155
Query: 101 -DGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHH 158
GR + + D+ RRDFT+NA+Y D V+DY G+ D + T++ IGD
Sbjct: 156 ASGRVLRDNVWGPQEEDAARRDFTVNAMYYDPANQVVVDYHNGIKDAQKLTLRMIGDPVT 215
Query: 159 RILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R ED +RI+R RF A +++ I++ K L + R++ E+ KLL+
Sbjct: 216 RYREDPVRIIRAIRFSAKLAALGFKMEAKTAAPLIESSKLLADVPQSRMFDEMLKLLQTG 275
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ 239
+ + I + G+ I+ +
Sbjct: 276 HAIATIEQLRKLGLATGIYPLLD 298
>gi|150021303|ref|YP_001306657.1| CBS domain-containing protein [Thermosipho melanesiensis BI429]
gi|149793824|gb|ABR31272.1| CBS domain containing protein [Thermosipho melanesiensis BI429]
Length = 859
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 67/393 (17%), Positives = 136/393 (34%), Gaps = 20/393 (5%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC-RKK 87
+VGG VRD + + DID+ + +K + + T +
Sbjct: 469 IYVVGGFVRDLFLGIENFDIDLVVEGNGMEFAKYVAKQLDVKVVEHEKFLTASLFFKDGF 528
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
D+ T R++ V K D RRDFTINA+ K + R
Sbjct: 529 RIDVATARTEYYDKPAELPKVDISTIKKDLYRRDFTINAMAIKLNSKEFGMLYDFFGSRK 588
Query: 148 RTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSER 204
+ I +ED R++R RF + + D + + G + ++ +R
Sbjct: 589 DLEEGIIRVLHKLSFVEDPTRMVRAVRFEQRFDFRIEDETLEILKETLEGGYLERVTGQR 648
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------LSQVIEAEQVFEW 258
I E+ K+L+ K+P+ I + I IF L + + ++
Sbjct: 649 IRQELEKILQEKDPVKGIKRLSELNILNRIFPKTYFTVLMEKKLKNMFLVFKRLKNIYSK 708
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE--IKKL 316
+ + + D +++ S+ +++ LP++ L + +
Sbjct: 709 NNIFYAVLRIFLEFYDVETLKSVMQRYGLPKKFVEELKKMEKRIIPVIEMIKMRIKFSDI 768
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGI 375
+ + G V I L + + ++ +V L+G+ + K+ I
Sbjct: 769 YKILGKPVFETAAHILAYLDDEDSKNYFFEYLERVF-------TVKLNLSGNVLKEKFKI 821
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++G I+ +++ + E L +L
Sbjct: 822 KSSPEIGKIMGEIFCMKLDNPYINEMEKLKEIL 854
>gi|296161792|ref|ZP_06844594.1| poly(A) polymerase [Burkholderia sp. Ch1-1]
gi|295887956|gb|EFG67772.1| poly(A) polymerase [Burkholderia sp. Ch1-1]
Length = 529
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 67/377 (17%), Positives = 137/377 (36%), Gaps = 35/377 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R
Sbjct: 78 LISRNAIRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRARI- 136
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-------------------------SDLITDGRY 104
+ + + ++ + +T R + GR
Sbjct: 137 ---IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAAPPRRLKRDELDRRTHAVDASGRV 193
Query: 105 AKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILED 163
+ + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R ED
Sbjct: 194 LRDNVWGEQHEDATRRDFTINAMYYDPATQTVLDYHNGMADMRARLLRMIGDPATRYRED 253
Query: 164 YLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223
+R+LR RF A I+ + + + R++ E+ KL+ + + L +
Sbjct: 254 PVRMLRVVRFAAKLDF-EIEDSTREPIAGMADLINNVPAARLFDEMLKLMLSGHALACLK 312
Query: 224 HMYNGGIFKEIFLD----VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279
+ G+ + +++ ++ + + + L + +
Sbjct: 313 RLRQEGLHHGLLPLLDVVLEQPIGEKFITLALNNTDARVRAGKPVSPGFLFATLLWHDVQ 372
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+KF E + I K F ++ +L++ +
Sbjct: 373 QRWQKFEANGEYPVPALHRAMDEVLDMQTEKLAIHKRFSSDMREIWGLQLRLEKRSGRSA 432
Query: 340 LTHQDTCFILQVLSDII 356
+ + ++
Sbjct: 433 VKLLEHQRFRAGYDFLL 449
>gi|86605414|ref|YP_474177.1| polyA polymerase family protein [Synechococcus sp. JA-3-3Ab]
gi|86553956|gb|ABC98914.1| polyA polymerase family protein [Synechococcus sp. JA-3-3Ab]
Length = 908
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 73/431 (16%), Positives = 144/431 (33%), Gaps = 43/431 (9%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL---------SVQDIDIATTI----------- 54
L + ++ + +VGG VRD L++ D+D+
Sbjct: 473 LEQAAHIADEKGLRLYLVGGTVRDLLLHRWGRQPSPNLERLDLDLVVDGPYSPALDGTDP 532
Query: 55 ------LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKV 107
L + + F + R + T +I DI + R++
Sbjct: 533 PGWGLILGQALKQRFPEARL---EIHGKFQTAALIWPGGFCVDIASARTEFYPYPASPPE 589
Query: 108 VFTRDWKADSLRRDFTINALYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILED 163
V + D RRDF+INAL G +V+D+ GG DL+ I+ + + +ED
Sbjct: 590 VAMGSIQQDLYRRDFSINALALRLNGPQRGQVLDFFGGQADLQQGIIRALHP--NSFIED 647
Query: 164 YLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222
RI R RF G + ++ + + A + +R+ E+ +L +++ A
Sbjct: 648 PTRIYRAVRFAVRLGFALDSTTEKWIRAAVASGLHDAVGGDRLKQELAYILGSRDWPQAF 707
Query: 223 VHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ G + I D++ +L +V F + L + + +
Sbjct: 708 ERLAEWGALRCIHPDLEWDPSLCQRLQRVGRWAYHFRRRYPELGSQEIWQLRLEALLLTL 767
Query: 281 MAKKFSLPR-EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ + I + + +TL ++ L+I +
Sbjct: 768 PQAPQVASQLHLTQAGIERLSHSSYYQTLLAQLDPSTLSPAQVVQLLQGLRIPAVILVAG 827
Query: 340 LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399
+ + + + + W L G D+ + G PG+ IL + +N
Sbjct: 828 IAPKPARRL--IWRYLQEWYWVKPLLNGHDLRRLGYKPGRPFQAILEQLRCLTLNGELTT 885
Query: 400 SQEDLHHLLRK 410
E L++
Sbjct: 886 PAEA-EAWLQE 895
>gi|309781368|ref|ZP_07676104.1| poly(A) polymerase [Ralstonia sp. 5_7_47FAA]
gi|308919781|gb|EFP65442.1| poly(A) polymerase [Ralstonia sp. 5_7_47FAA]
Length = 521
Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats.
Identities = 63/263 (23%), Positives = 112/263 (42%), Gaps = 36/263 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ + + S L + IVGGAVRD L+ + +D D+AT PD+V +F ++R
Sbjct: 67 PKLLSRNAVKVTSTLQDAGYAAFIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSR 126
Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLR--------------------------SD 97
+ + + ++ +++T R
Sbjct: 127 I----IGRRFQIVHVTFYGGRDQEIIEVSTFRALVDAVDAEQVPAGKRVKRTELDHHTHA 182
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFT+NA+Y + V DY G+ D+R RT++ IGD
Sbjct: 183 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADETVHDYHHGMEDMRARTLRMIGDP 242
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R ED +R+LR RF A G +ID D + + + + R++ E+ KLL +
Sbjct: 243 LTRYREDPVRMLRVVRFAAKTGF-DIDPDTRAPIAELGPLIHNVPAARLFDEMLKLLMSG 301
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ 239
+ ++ + G+ + + +
Sbjct: 302 HAWASLQELRKAGLHRGLLPLLD 324
>gi|298492601|ref|YP_003722778.1| polynucleotide adenylyltransferase region ['Nostoc azollae' 0708]
gi|298234519|gb|ADI65655.1| Polynucleotide adenylyltransferase region ['Nostoc azollae' 0708]
Length = 907
Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats.
Identities = 71/436 (16%), Positives = 145/436 (33%), Gaps = 42/436 (9%)
Query: 13 SDLINILSLL----NKGEDKSCIVGGAVRDSLM-----N-LSVQDIDIATTIL------- 55
L +L++ K +VGG+VRD L+ L + DID+
Sbjct: 471 PQLWQLLNIASQEAEKRGWHLYLVGGSVRDLLLVEAQPGTLMINDIDLVVDGFHQAADVG 530
Query: 56 -PDRVMRIFSKTRYKV-IPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKV 107
+ + + + ++ T ++ K + DI T R++
Sbjct: 531 AGIELAKALQQIYQNARLEIHGAFQTAALLWHKDPELDSLWVDIATSRTEFYPYPAANPE 590
Query: 108 VFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILED 163
V + D RRDFTINA+ + G+++D+ GGL DL+ + ++ + + +ED
Sbjct: 591 VEASSIRQDLYRRDFTINAMALRLTSPRSGELLDFFGGLLDLQAKQVRILHP--NSFIED 648
Query: 164 YLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS----------EINKLL 213
RI R RF +G + G+ +S+ E +L
Sbjct: 649 PTRIYRGVRFAVRFGFQIEQRTEEYIRYAINSGVYDRTSQENTKTPALQTRLKAEFKNIL 708
Query: 214 EAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQ 273
A +A+ + N G + + ++ + + L Q+ + + +
Sbjct: 709 AATYWQSALHLLDNLGALRCLHHSLK-LDGEVLRQLSLLDIYLRRFGQQQNLHDWQMRLE 767
Query: 274 DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333
+ L + + + ++ S N + +++ K L
Sbjct: 768 VLVAHLEPKYQAKVAKNLQLADDSISRFNKLFAAQTEIITSLPNCELPSQIVHLLRKYDL 827
Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
A ++ + + K L G+D+ + G P IL +
Sbjct: 828 ATLILIALQSPRKIRRKIRHFLTNLAKIQPLLNGNDLKELGYKPNPLYKQILDDLLTATL 887
Query: 394 NSSFQLSQEDLHHLLR 409
+ + + E L +
Sbjct: 888 DGTIKDKSEAREFLAQ 903
>gi|260582019|ref|ZP_05849814.1| polyA polymerase [Haemophilus influenzae NT127]
gi|260094909|gb|EEW78802.1| polyA polymerase [Haemophilus influenzae NT127]
Length = 480
Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats.
Identities = 83/415 (20%), Positives = 154/415 (37%), Gaps = 43/415 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ + ++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 60 FSRNALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 116
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D++R
Sbjct: 117 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 176
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 177 RDFTVNALYYNPQDNTLRDYFEGIKDLKASKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 236
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + G+F+++F +
Sbjct: 237 MF-LEKPSEQPISELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 295
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 296 SPY-------------FTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPL 342
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 343 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGS 402
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQL--SQEDL 404
+ + P F G D++ G G + + W F +E L
Sbjct: 403 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQFSNGEQREQL 452
>gi|325983710|ref|YP_004296112.1| poly(A) polymerase [Nitrosomonas sp. AL212]
gi|325533229|gb|ADZ27950.1| poly(A) polymerase [Nitrosomonas sp. AL212]
Length = 462
Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats.
Identities = 69/363 (19%), Positives = 134/363 (36%), Gaps = 23/363 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ I L + + +VGGAVRD L+ L +D D+AT P+ V +IF ++R
Sbjct: 39 TPCTLKIALNLQQAGFSAYLVGGAVRDLLLGLVPKDFDVATNATPEEVHKIFRRSRI--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-------------LITDGRYAKVVFTRDWKADSL 118
+ + ++C + +++T R + GR + D++
Sbjct: 96 -IGRRFRLVHVMCGAETVEVSTFRGPSPDEDEDPAFKQSIDQHGRLLHDNVFGSQEEDAM 154
Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NAL+ D + I DY+ G D++ R ++ IGD R ED +R+LR R
Sbjct: 155 RRDFTVNALFYDPVKEEILDYLHGYEDIKARRMRIIGDPVQRFREDPIRLLRAVRLATKL 214
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+ ID+ L+ + R++ E+ KLL + + L +V + G+ +
Sbjct: 215 DMQ-IDAQTAKPIGDLAPLLQNVPPSRLFDEMLKLLLSGHALACVVELRMRGLHHGLLPM 273
Query: 238 VQEISL----DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
+ I ++ + + + + L + +LS E
Sbjct: 274 LDVILEQPLGERFITIALKNTDERVRQNKPVSPGFLFAILLWHEVLSHWNSLQASGEKPL 333
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353
+ + I + F ++ + + +
Sbjct: 334 PALFEAMNHILSLQRKKLAIPRRFDAVIQEIWAMQPRFEARIGRKPFRLLAHPRFRAAYD 393
Query: 354 DII 356
++
Sbjct: 394 FML 396
>gi|89095126|ref|ZP_01168052.1| poly(A) polymerase [Oceanospirillum sp. MED92]
gi|89080621|gb|EAR59867.1| poly(A) polymerase [Oceanospirillum sp. MED92]
Length = 467
Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats.
Identities = 65/391 (16%), Positives = 137/391 (35%), Gaps = 35/391 (8%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ ++ D + + + L + +VGG +RD L+ +D D+AT P+ +F
Sbjct: 42 KISRRFLDD-NALKVAYRLQDAGFEGYLVGGCIRDLLLKKRPKDFDVATDAHPEEAAELF 100
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLR--------------SDLITDGRYAKVVF 109
+ R + + + + ++ T R G +
Sbjct: 101 RRARL----IGRRFKLVHVRFGRDLIEVATFRASHDSQSEEGEGEQGKQCDSGLILRDNV 156
Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168
+ D+LRRDFT+NALY V D+ G DL+ ++ IGD R ED +R+L
Sbjct: 157 YGTIEDDALRRDFTVNALYYCPKDHCVYDFANGYEDLQKGILRMIGDPEARYKEDPVRML 216
Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228
R RF A ID + I LK ++ R++ E+ KL ++ + + + +
Sbjct: 217 RAARFAAKLDF-TIDPQSELPIIPLAPMLKRIAPARLFDEVLKLFQSGHAVQSYEQLRRL 275
Query: 229 GIFKEIFL--------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+F+ +F + ++ L+ L + L +
Sbjct: 276 ELFEPLFPLVHRTLQQEQLDVPLENLINNALKNTDRRLAQRKSVTPAFLFAAILWYPTQI 335
Query: 281 MAKKFSLPREIRYFLISF-FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
++ +++ + + I + F ++ +L++
Sbjct: 336 RMQQLMKEKKMPPLPAMHEAANEILGEQVKSTAIPRRFSTPIREIWEMQLRLPRRQGNRA 395
Query: 340 LTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ ++ + +G+D+
Sbjct: 396 ARLMEHPRFRAAYDLLLLREN-----SGEDL 421
>gi|222054332|ref|YP_002536694.1| poly(A) polymerase [Geobacter sp. FRC-32]
gi|221563621|gb|ACM19593.1| poly(A) polymerase [Geobacter sp. FRC-32]
Length = 451
Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats.
Identities = 60/260 (23%), Positives = 102/260 (39%), Gaps = 35/260 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + +VGG VRD L+ +D DI T P ++ ++F R
Sbjct: 22 SPNAVKVLYRLKDNGFTAYLVGGGVRDLLLGREPKDFDIVTDATPLQIKKMFRNCRL--- 78
Query: 72 PTSISYGTIKIICRKKYFDITTLR------------------SDLITDGRYA-------- 105
+ + + + ++ T R GR
Sbjct: 79 -IGRRFRLAHLHFQDEIIEVATFRSARLDDVPAEEPAAMDESEGHTLTGRSPLLLKSEDG 137
Query: 106 ---KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRIL 161
+ D++RRDFT+NAL + +IDYVGGL+DL+ I+ IGD+ R +
Sbjct: 138 MVLRDNIFGTPAEDAVRRDFTVNALAYNISDFSLIDYVGGLDDLQRGVIRTIGDSGIRFV 197
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R++R RF A G ++ ++ + S R++ E+ KL
Sbjct: 198 EDPVRMIRAVRFAAMLGF-RVEETTWQTILELSPTVTKASPPRLYEEVLKLFLLGAGERT 256
Query: 222 IVHMYNGGIFKEIFLDVQEI 241
+ GIF +F +
Sbjct: 257 YQLLRQSGIFSALFPHFNDW 276
>gi|241664040|ref|YP_002982400.1| poly(A) polymerase [Ralstonia pickettii 12D]
gi|240866067|gb|ACS63728.1| poly(A) polymerase [Ralstonia pickettii 12D]
Length = 520
Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats.
Identities = 63/263 (23%), Positives = 113/263 (42%), Gaps = 36/263 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ + + S L + + IVGGAVRD L+ + +D D+AT PD+V +F ++R
Sbjct: 66 PKLLSRNAVKVTSTLQEAGYSAFIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSR 125
Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLR--------------------------SD 97
+ + + ++ +++T R
Sbjct: 126 I----IGRRFQIVHVTFYGGRDQEIIEVSTFRALVDAVDAEQVPAGKRVKRTELDHHTHA 181
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFT+NA+Y + V DY G+ D+R RT++ IGD
Sbjct: 182 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADETVHDYHHGMEDMRARTLRMIGDP 241
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R ED +R+LR RF A G +ID D + + + + R++ E+ KLL +
Sbjct: 242 LTRYREDPVRMLRVVRFAAKTGF-DIDPDTRAPIAELGPLIHNVPAARLFDEMLKLLMSG 300
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ 239
+ ++ + G+ + + +
Sbjct: 301 HAWASLQELRKAGLHRGLLPLLD 323
>gi|261415916|ref|YP_003249599.1| Polynucleotide adenylyltransferase region [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261372372|gb|ACX75117.1| Polynucleotide adenylyltransferase region [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 426
Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats.
Identities = 63/408 (15%), Positives = 143/408 (35%), Gaps = 22/408 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPT 73
L++I + + ++ +VGG VRD+L+ + +D D+ ++ D ++ I K +
Sbjct: 20 LLSIAGEIREAGGRAFLVGGWVRDALLGKNCRDYDVEVYDLVQDELVPILKKYG-RTNLV 78
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYA 129
++G I + + D + R++ + V D +K +LRRDFTINA+
Sbjct: 79 GKAFGVIHLAMKGLSLDFSFPRTESKVGYGHRGFVVHTDEKLSFKEAALRRDFTINAMGM 138
Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ + + D GG++DL+ ++ +G A +ED LRILR +F + + K + +
Sbjct: 139 ELPELTLCDPYGGIDDLKKGLLRHVGPA---FVEDSLRILRGVQFASRFALK--LAPETI 193
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV-----HMYNGGIFKEIFLDVQEISL 243
+ + LL+ P + + +
Sbjct: 194 ELCRTLSLEDLSIERLFEEFKKWLLKPGKPSLGLRAFLDIKLNEFFPEVSPLRGSWDDLG 253
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF----- 298
+ L F +S + S+ + + + ++ +
Sbjct: 254 EMLDNTESLRDNLSDDQVMEFAFAAFLSGSPETSLKFLERITNETHLVKNVPLLLNAYST 313
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ ++ + ++ K + +
Sbjct: 314 LDFAIVSDAPALRRMAVKLGGLKLLCLLVKATPRKYYAAAGASEFPEQLWQAAADLDLIE 373
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
P L G +++ G PGK++G + + ++ + ++E +
Sbjct: 374 AAPQPFLMGKMLMEMGFKPGKQMGETIKQSFELQLDGKIKNAEEAIAW 421
>gi|261867904|ref|YP_003255826.1| poly(A) polymerase [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413236|gb|ACX82607.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Aggregatibacter actinomycetemcomitans D11S-1]
Length = 592
Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats.
Identities = 56/246 (22%), Positives = 110/246 (44%), Gaps = 16/246 (6%)
Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66
+ + ++ L + ++ +VGG +RD L+ +D D+AT P+++ +F +
Sbjct: 5 APRMINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAVFQRQ 64
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKA 115
+ ++ ++ ++ T R+ + G + +
Sbjct: 65 ---CRLVGRRFRLAHVMFGREIIEVATFRAGHMEHHNEKLAKQSEEGMLLRDNVYGTLEQ 121
Query: 116 DSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
D+ RRDF++NALY + Q + DY G++DL+N ++ IGD R ED +R+LR RF
Sbjct: 122 DAERRDFSVNALYYNPQDNTLKDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRMLRSIRFM 181
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
A +D + LK + R++ E KLL+ + + + G+F+++
Sbjct: 182 AKLEMF-LDKPSEAPIKELSHLLKNIPPARLFEESLKLLQGGSGVKTYRLLRQYGLFEQL 240
Query: 235 FLDVQE 240
F +Q
Sbjct: 241 FPLLQN 246
>gi|87121697|ref|ZP_01077584.1| polyA polymerase [Marinomonas sp. MED121]
gi|86162948|gb|EAQ64226.1| polyA polymerase [Marinomonas sp. MED121]
Length = 478
Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats.
Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 23/248 (9%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK + +VGG +RD L++L+ +D D+ T P+ V +FS +R
Sbjct: 41 SPNAVKVLYRLNKAGFDAFLVGGCIRDHLIDLAPKDFDVVTNATPEEVHNLFSNSRL--- 97
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT-----------------DGRYAKVVFTRDWK 114
+ + + ++ +++T R+ G + D +
Sbjct: 98 -IGRRFRLVHVTFGREIIEVSTFRATAQQSEDSKKDDKHSDSARSAHGMILRDNIFGDIE 156
Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
D+ RRDFT NALY D + DY GGL D+ + ++ IGDA R ED +R+LR RF
Sbjct: 157 QDAERRDFTFNALYYDISDFSIHDYCGGLEDIAAKKVRIIGDAKLRYQEDPVRMLRAIRF 216
Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
A +I+++ + L + R++ E+ KLL + N + + G+F+
Sbjct: 217 AAKLDF-DIEAETAAPIKEMAHLLDHIPPARLFEEVLKLLGSGNGVTTYKLLREYGLFRY 275
Query: 234 IFLDVQEI 241
+F + E+
Sbjct: 276 LFPETDEL 283
>gi|288942459|ref|YP_003444699.1| poly(A) polymerase [Allochromatium vinosum DSM 180]
gi|288897831|gb|ADC63667.1| poly(A) polymerase [Allochromatium vinosum DSM 180]
Length = 445
Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 106/241 (43%), Gaps = 16/241 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +L L + ++ +VGG VRD L+ +D D+AT P++V ++F R
Sbjct: 32 SEQALRVLYRLRQENFQAHLVGGGVRDLLLGHEPKDFDVATDATPEQVRQVFRNCRL--- 88
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVF----------TRDWKADSLRRD 121
+ + + ++ T R DG A + D+LRRD
Sbjct: 89 -IGRRFRLAHVHFGRDIIEVATFRGSGSDDGEDADRQMRDGLIVRDNIYGSIEEDALRRD 147
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINALY D +IDY GG++DLR ++ IGD R ED +R+LR RF G
Sbjct: 148 FTINALYYDIADFALIDYAGGIDDLRAGRLRLIGDPVKRYREDPVRMLRAVRFACKLGF- 206
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
I+ + L+ + + R++ E+ KL + L + + G+F +F +
Sbjct: 207 TIEPATERPLFELGHLLRDIPAARLFDELLKLFHSGYGLEVFEKLRHYGLFGHLFPATEA 266
Query: 241 I 241
Sbjct: 267 C 267
>gi|108761014|ref|YP_630764.1| poly(A) polymerase [Myxococcus xanthus DK 1622]
gi|108464894|gb|ABF90079.1| poly(A) polymerase [Myxococcus xanthus DK 1622]
Length = 548
Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats.
Identities = 59/184 (32%), Positives = 86/184 (46%), Gaps = 21/184 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D D + ++ L++ ++ +VGG VRD L+ +D DIAT+ P+ V IF R
Sbjct: 119 DPDALKVVLRLHQHGHQAYMVGGCVRDLLLGRKPKDFDIATSATPNEVRGIFRNCRL--- 175
Query: 72 PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYA---------------KVVFTRDWKA 115
+ + K +++T R++ A +
Sbjct: 176 -IGRRFRLAHVYFKGGKIIEVSTFRANPTELEHAANGGEDEGDGEDLLITHDNVFGTAQQ 234
Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
D+ RRDFTIN L+ D +G+VIDYV G DL R I+ IGD R+ ED +RILR RF
Sbjct: 235 DARRRDFTINGLFYDVAEGRVIDYVRGRRDLDERFIRTIGDPEVRMREDPVRILRAVRFA 294
Query: 175 AHYG 178
A G
Sbjct: 295 AKLG 298
>gi|148656064|ref|YP_001276269.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Roseiflexus sp. RS-1]
gi|148568174|gb|ABQ90319.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Roseiflexus sp. RS-1]
Length = 459
Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats.
Identities = 73/460 (15%), Positives = 144/460 (31%), Gaps = 59/460 (12%)
Query: 4 IVQHKWFHD-SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
++Q W+ L + + + + +VGGAVRD L+ L+ DIDI + + +
Sbjct: 1 MLQPSWYALLERLDPLFAAMMRVGGHPLLVGGAVRDLLLGLTPTDIDIEVYGVDGQTLAA 60
Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSL 118
+V S+G +K+ + D+ G + +
Sbjct: 61 ALAPFGRVNVVGRSFGVLKMRLDEYEVDVALPSRRHPLPDEETGALPDYDPSLTPREALA 120
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDFTINAL G +IDY GG DL R ++ +D LR+LR +F A +
Sbjct: 121 RRDFTINALALTPSGDLIDYFGGRADLEARVLRHT---SEAFGDDPLRVLRAMQFAARFA 177
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ + + + L P + + G
Sbjct: 178 MRLAPETAALCRTLLSQAAGLPPDRIWREWQKWALLGVFPSAGLRALDESGWLALYPELA 237
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSL-------------------LRFIVLISWQDKKS-- 277
Q + V+ + L L K
Sbjct: 238 ALQGCPQHPRYHPEGDVWTHTLHVCDAAVRIADRDALDGHERLTLIVAALCHDLGKPPTT 297
Query: 278 --------------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ + P I + + L++ ++
Sbjct: 298 VIDDDGIPRSIGHSEAGVSLTQTFLVRIGAPHWIERRVTPLVREHLA--HLNVQPTPRVV 355
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ--------VLSDIIHWKKPLFPLTGDD 369
++ A L+ + L + + + C + ++ +P + G D
Sbjct: 356 RRLAHRLAPATLQQWERLVEADASGRPPCPPDRPAAAFLAVAEAEGAAMSRPAPLVRGRD 415
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
++ G+ PG ++G +L + ++ F ++E + +L+
Sbjct: 416 LIAAGVAPGPRLGALLRRAYEAQLDGVFSTAEEGVTWVLQ 455
>gi|326565160|gb|EGE15351.1| poly(A) polymerase [Moraxella catarrhalis 103P14B1]
gi|326574643|gb|EGE24579.1| poly(A) polymerase [Moraxella catarrhalis 101P30B1]
Length = 599
Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats.
Identities = 68/348 (19%), Positives = 125/348 (35%), Gaps = 11/348 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ I+ L K + IVGG VRDSL+ L+ +D D T P + IF +
Sbjct: 35 IVEIIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIF---GGRCRIIG 91
Query: 75 ISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + ++ ++ T R + DG + D + D RRDF+INALY
Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTEDGMITRDNVWGDIEQDFARRDFSINALY 151
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+G+V+D+ L D+ + T++ +GDA RI ED +R+LR RF A G +
Sbjct: 152 YQPIKGEVLDFCDALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLGFEFDQDLAN 211
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
L+ +S+ R++ E K+ + ++ G + + L
Sbjct: 212 QFHQDNWTLLEQVSTHRLYDETQKMFGGGYLTPLLPLLFEHGAMSSL-MSFAPNEPTPLM 270
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
V+ D + + ++ L K+ +
Sbjct: 271 MVVAQNTDRRIAADKSVNPAFFYAAMLWENYLYQLAKYKKRGLPFHEAQIKAAEKTIDAQ 330
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
I K + + + + K+ + + +
Sbjct: 331 RIKTAIPKFAEQFITDIWLLQPKLVNPRVRDIANLERLPKFRAAFDFL 378
>gi|167721064|ref|ZP_02404300.1| poly(A) polymerase [Burkholderia pseudomallei DM98]
Length = 456
Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats.
Identities = 72/370 (19%), Positives = 137/370 (37%), Gaps = 36/370 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 34 LISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 92
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR----------------------------SDLITD 101
+ + + ++ +++T R +
Sbjct: 93 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDAS 149
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+ RRDFTINA+Y D V+DY G+ D+R R ++ IGD R
Sbjct: 150 GRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRY 209
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + L
Sbjct: 210 REDPVRMLRVVRFAAKLGF-DIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHALA 268
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 269 CLKQLRKQGLHHGLLPLLDVV--LEQPQGEKFVTLALNNTDARVRAGKPVSPGFLFATLL 326
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ I + ++ + L L
Sbjct: 327 WHDMRQRFEQYSADGEFPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKR 386
Query: 341 THQDTCFILQ 350
+ + +L+
Sbjct: 387 SGRSALRLLE 396
>gi|332288744|ref|YP_004419596.1| hypothetical protein UMN179_00667 [Gallibacterium anatis UMN179]
gi|330431640|gb|AEC16699.1| conserved hypothetical protein [Gallibacterium anatis UMN179]
Length = 502
Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats.
Identities = 67/365 (18%), Positives = 133/365 (36%), Gaps = 30/365 (8%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ ++ L ++ +VGG +RD L++ + +D D+AT P+++ +IF +
Sbjct: 69 LISRQALQVVEKLQNNGFEAYVVGGCLRDILLDKTPKDFDVATNARPEQIQKIFQRQ--- 125
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSL 118
+ I+ ++ ++ T R+ G + + D+
Sbjct: 126 CRLVGRRFRLAHILFGREIIEVATFRAAHDAINNDKLAKQSAEGMLLRDNVYGSLEDDAA 185
Query: 119 RRDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NA Y ++ K+ D+ G+ DLR + IGD R ED +R+LR RF A
Sbjct: 186 RRDFTVNAFYYDPRKDKLYDFFNGIKDLRAGRLMLIGDPTQRYQEDPVRMLRAIRFMAKL 245
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+D + L+ + + R++ E KLL+ +Y +F ++F
Sbjct: 246 DMF-LDKKCEQPIYQLASLLQNIPAARLFDESLKLLQTGKGEKTYQLLYKYQLFHQLFPA 304
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+ F DS +++ + + ++ + + F
Sbjct: 305 LIPF--------------FTTNNDSFTEKMIVTALRSTDERIADHLRINPAFLFAAFFWY 350
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
Y ++ + +A+ + + LQ+L
Sbjct: 351 PLRERIEILKNEGGLNNFDAYSLASNDLLTLICQRVAILRRHTATIRDIWSLQLLFTKRT 410
Query: 358 WKKPL 362
KKP
Sbjct: 411 GKKPQ 415
>gi|312795197|ref|YP_004028119.1| Poly(A) polymerase / tRNA-nucleotidyltransferase [Burkholderia
rhizoxinica HKI 454]
gi|312166972|emb|CBW73975.1| Poly(A) polymerase (EC 2.7.7.19) / tRNA-nucleotidyltransferase (EC
2.7.7.25) [Burkholderia rhizoxinica HKI 454]
Length = 572
Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats.
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 39/250 (15%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
I + L + ++ IVGGAVRD L+N++ +D D+AT PD V+++F + R
Sbjct: 117 LISRHAIRVTDTLQQAGFRAFIVGGAVRDLLLNIAPKDFDVATDATPDEVVKLFRRARL- 175
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR---------------------------------S 96
+ + + ++ +++T R
Sbjct: 176 ---IGRRFQIVHVQFGQEIIEVSTFRALMDAVPADVGSADSAPAAPPRKLRRGELDRRTH 232
Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGD 155
+ GR + + D+ RRDFT+NA+Y D + + DY G++D+R R ++ IG+
Sbjct: 233 AVDASGRVLRDNVWGEQHEDATRRDFTVNAMYYDPATQTVLDYHRGMDDIRARVLRMIGE 292
Query: 156 AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215
R ED +R+LR RF A G I+S K + + + R++ E+ KLL +
Sbjct: 293 PATRFREDPVRMLRVVRFAAKLGF-TIESSTHAPIAKLADLINNVPAARLFDEMLKLLLS 351
Query: 216 KNPLNAIVHM 225
+ L + +
Sbjct: 352 GHALGCLKQL 361
>gi|119478378|ref|ZP_01618386.1| poly(A) polymerase [marine gamma proteobacterium HTCC2143]
gi|119448587|gb|EAW29833.1| poly(A) polymerase [marine gamma proteobacterium HTCC2143]
Length = 462
Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats.
Identities = 72/380 (18%), Positives = 137/380 (36%), Gaps = 29/380 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +++ L K +VGG VRD L+ +D DIAT P++V ++F +R
Sbjct: 45 SDAALRVMTTLRKAGFAGFLVGGGVRDLLLGGRPKDFDIATDATPEQVRKLFHNSRI--- 101
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI-----TDGRYAKVVFTRDWKADSL-------- 118
+ + + ++ ++TT R G+ + + K L
Sbjct: 102 -IGRRFKIVHVRFGREIIEVTTFRGTHEQVEQSPKGKRPQNQNSAQSKNGMLLRDNVFGT 160
Query: 119 ------RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171
RRDFTINALY V DY GL DL + I+ IGD R ED +R+LR
Sbjct: 161 VEEDAVRRDFTINALYYTTADFAVYDYTSGLRDLDEKIIRIIGDPETRYREDPVRMLRAV 220
Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231
RF A I+ + ++ L + + R++ E+ KLL + + M G+F
Sbjct: 221 RFAAKLNF-TIEKNTAKPILRLAPSLADIPAARMFDEVLKLLMSGYGADVYKLMQQYGLF 279
Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFEWKID----SLLRFIVLISWQDKKSILSMAKKFSL 287
+ +F Q + ++ + + + + + ++ ++
Sbjct: 280 EPLFPQTQPCLQQPQANILVEQAIKNTDARIQQGKPVTPAFIFAALLWPAVNERQQQLVK 339
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
R + + K F + ++ +L++ +
Sbjct: 340 ERVPEIPAMHQAAQEIASMQQQHTAVPKRFGIPMREIWDMQLRLSKRGGNKAEQMIENRR 399
Query: 348 ILQVLSDIIHWKKPLFPLTG 367
++ ++ P G
Sbjct: 400 FRAAYDFLLLREQAGEPTDG 419
>gi|317050448|ref|YP_004111564.1| polynucleotide adenylyltransferase region [Desulfurispirillum
indicum S5]
gi|316945532|gb|ADU65008.1| Polynucleotide adenylyltransferase region [Desulfurispirillum
indicum S5]
Length = 875
Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats.
Identities = 73/408 (17%), Positives = 158/408 (38%), Gaps = 25/408 (6%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY-- 77
L N+ + + +VGG VRD ++ + QD+D ++ I +
Sbjct: 472 QLANEMDIQVYLVGGIVRDLVLRVKNQDMDFVVAGDGISFGNRLAERLGGRIRVHERFNT 531
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVI 136
G I + D+ + R++ V K D RRDF+INA+ ++I
Sbjct: 532 GVIILPGDDFRIDVASSRNEYYDHPGALPNVSPGSIKRDLYRRDFSINAMAVSLNTFELI 591
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKK 195
DY GG+ D+R++ I+ + + +ED RI R RF Y + + L+ S +
Sbjct: 592 DYFGGVQDIRDKKIRVLH--NLSFIEDPTRIFRAVRFEQRYSFQIGEQTIKLLRSARDLD 649
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------SLDQLS 247
++ +S RI+ E+ + + P + ++ + + I + S++ L
Sbjct: 650 LIQHISGHRIYEELRHMFLEQEPAKHMARLFELDLMRSIHPALGYDQKTMKLVESMEDLL 709
Query: 248 QVIEAEQVFEWKIDSLLRF-IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
V + ++ + + D+L I+ ++ L + ++ +
Sbjct: 710 VVSDFLRLEDVRRDALYCALILRTIKAEQIMALPILQELPQRDREIIAFGCSKAGMLLHE 769
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
++ + L + L + + + L+ I L
Sbjct: 770 LGRTGKLWQKLRLV-KRHEEEVLLLAIVYGNQQASAHFLREYLRSYRTIH------PILR 822
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWI--NSSFQLSQEDLHHLLRKLI 412
GD+++ G+P G +VG+ L+ I +++ +E+ + +R+++
Sbjct: 823 GDELMALGVPRGHQVGDALLMLTAYIIGRDANRPDRREE-ENFVRRIV 869
>gi|257094033|ref|YP_003167674.1| poly(A) polymerase [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
gi|257046557|gb|ACV35745.1| poly(A) polymerase [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
Length = 448
Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats.
Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 16/218 (7%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
+ L +G ++ +VGGAVRD L L +D D+AT P++V + F ++R +
Sbjct: 44 IETLQEGGYQAYVVGGAVRDLLAGLVPKDFDVATNATPEQVRQCFRRSRI----IGRRFQ 99
Query: 79 TIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + + ++TT R GR + D+ RRDFT+NALY
Sbjct: 100 IVHVNMGVETIEVTTFRGHHGEQGGNKAQTDDQGRVLRDNVFGSQAEDAARRDFTVNALY 159
Query: 129 ADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D + +IDY G+ DL+ +T++ IGD R ED +R+LR R A G ID +
Sbjct: 160 YDPTAETIIDYHHGVADLKQKTLRMIGDPKTRYREDPVRMLRAVRLAAKLGLM-IDPEAS 218
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
+ ++ + R++ E+ KLL + + + + +
Sbjct: 219 RPIREMTDLIENVPPSRLFDEMLKLLTSGHAVRCVTRL 256
>gi|86148287|ref|ZP_01066582.1| polyA polymerase [Vibrio sp. MED222]
gi|85833912|gb|EAQ52075.1| polyA polymerase [Vibrio sp. MED222]
Length = 451
Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats.
Identities = 76/355 (21%), Positives = 138/355 (38%), Gaps = 22/355 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN + +VGG VRD L+ +D DIAT P+++ +F R
Sbjct: 35 SDNALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKHLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R G + + D+ RRD
Sbjct: 92 -IGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSEEGMLLRDNVYGNVDEDAERRD 150
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+Y + + DY GG+ DL ++ I+ IGD R ED +R+LR RF A
Sbjct: 151 FTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMRFAAKLDF- 209
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+ D + LK + + R++ E KLL++ + L M +F+++F V E
Sbjct: 210 DIEEDTADPIEELAHLLKDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQMFPSVAE 269
Query: 241 ISLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSL---PREIRYFLI 296
+ EQ+ + +DS LR +M + + +
Sbjct: 270 HFTEGYDS--HTEQMLDLVLDSTDLRIEDGKRVNPAFMFAAMLWYPMNKLADKLVAEQGM 327
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ ++ + + K + + L L + ++++
Sbjct: 328 AHYDAIMEASNIILDRQVKSIAIPRRHTATIREVWQLQLRLPRRNGKRAVRLMEL 382
>gi|95928272|ref|ZP_01311020.1| poly(A) polymerase [Desulfuromonas acetoxidans DSM 684]
gi|95135543|gb|EAT17194.1| poly(A) polymerase [Desulfuromonas acetoxidans DSM 684]
Length = 419
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 101/240 (42%), Gaps = 16/240 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D + + +L L + + +VGG+VRD L+ +D D+ T P++V ++F R
Sbjct: 19 MMDENSLKVLYRLRQHGYTAYLVGGSVRDLLLGRKPKDFDVGTDATPEQVRKLFRNCRL- 77
Query: 70 VIPTSISYGTIKIICRKKY-FDITTLRSDLITD---------GRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R D + + D+ R
Sbjct: 78 ---IGRRFRLAHIMFGRHCLIEVATFRRKPDPDEIPDAEEDGPNHFAENVFGTPEEDAFR 134
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINAL+ D ++DYVGGL DL + I+ IGD R ED +R+LR F A
Sbjct: 135 RDFTINALFYDIENYSIVDYVGGLQDLHDGIIRVIGDPDERFHEDPVRMLRALEFSARLD 194
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + A + + L S RI EI +L K + G+ + +
Sbjct: 195 F-ELEQSIIPAMDRCGELLLTASPARIREEIMELFRHKVAGQVLQKADRYGLLSYLVPNF 253
>gi|293390232|ref|ZP_06634566.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D7S-1]
gi|290950766|gb|EFE00885.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 488
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/243 (23%), Positives = 109/243 (44%), Gaps = 16/243 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + ++ L + ++ +VGG +RD L+ +D D+AT P+++ IF +
Sbjct: 64 MINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAIFQRQ--- 120
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSL 118
+ ++ ++ ++ T R+ G + + D+
Sbjct: 121 CRLVGRRFRLAHVMFGREIIEVATFRAGHAEHHNEKLAKQSEEGMLLRDNVYGTLEQDAE 180
Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDF++NALY + Q + DY G++DL+N ++ IGD R ED +R+LR RF A
Sbjct: 181 RRDFSVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL 240
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+D + LK + R++ E KLL+ + + + G+F+++F
Sbjct: 241 EMF-LDKPSEAPIKELSHLLKNIPPARLFEESLKLLQGGSGVKTYRLLRQYGLFEQLFPL 299
Query: 238 VQE 240
+Q
Sbjct: 300 LQN 302
>gi|110833201|ref|YP_692060.1| poly(A) polymerase [Alcanivorax borkumensis SK2]
gi|110646312|emb|CAL15788.1| poly(A) polymerase [Alcanivorax borkumensis SK2]
Length = 459
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 19/243 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+N+L L+KG ++ +VGG +RD L +D D++T P++V R+F ++R
Sbjct: 42 SRAALNVLYGLHKGGFEAYLVGGCLRDILCGREPKDFDVSTNATPEQVQRLFKRSRI--- 98
Query: 72 PTSISYGTIKIICRKKYFDITTLR-------------SDLITDGRYAKVVFTRDWKADSL 118
+ + + ++ +++T R G + + D+L
Sbjct: 99 -IGRRFQIVHVRFGREVIEVSTFRAKASDDNQDRNKHHAHEETGMVLRDNTWGSIEEDAL 157
Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTINALY + + D+VG + D+ TI+ IGD R ED +R+LR RF A
Sbjct: 158 RRDFTINALYYNIADFSLHDFVGSMEDIDQETIRLIGDPEQRFREDPVRMLRAARFAAKL 217
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G I+ + L + S R++ E+ KL + + + + G+F+ +F +
Sbjct: 218 GF-EIEKSTASRIPDMAELLLQVPSARLFDEVLKLFLSGHARASYEQLQELGLFRFLFPE 276
Query: 238 VQE 240
Q+
Sbjct: 277 TQQ 279
>gi|121591044|ref|ZP_01678360.1| polyA polymerase [Vibrio cholerae 2740-80]
gi|121547115|gb|EAX57248.1| polyA polymerase [Vibrio cholerae 2740-80]
Length = 420
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 76/397 (19%), Positives = 142/397 (35%), Gaps = 41/397 (10%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R
Sbjct: 1 ALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL----IG 56
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLRRDF 122
+ I+ + ++ T R G + D+ RRDF
Sbjct: 57 RRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAERRDF 116
Query: 123 TINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
TINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF +
Sbjct: 117 TINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLDF-D 175
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
I+ D + L+ + + R++ E K+L+A + L M +F+++F + E
Sbjct: 176 IEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTIAEH 235
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+ EQ+ + +D+ + + +
Sbjct: 236 --FTADHSSKTEQMLDLVLDAT-----------DIRVEEDLRINPAFMFAAMLWYPMIDL 282
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
++++ +K + T +D + Q L +
Sbjct: 283 ADRLMESLDLNEFDAITEASNRILDEVVKRIAIPRRHTTTVRDIWQLQQRLPRRSGKRAF 342
Query: 362 LFP-LT----GDDVVKY-GIPPGKKVGNILVHCKQEW 392
L G D ++ G G G + W
Sbjct: 343 RLLELNKFRAGFDFLEMRGEIEG---GET-KQLAEWW 375
>gi|309972803|gb|ADO96004.1| Poly(A) polymerase I [Haemophilus influenzae R2846]
Length = 452
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 84/419 (20%), Positives = 157/419 (37%), Gaps = 42/419 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 32 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 88
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D++R
Sbjct: 89 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 148
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + G+F+++F +
Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 268 S-------------SYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPL 314
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 315 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGS 374
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + P F G D++ G G + + W F E L+++
Sbjct: 375 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQFSNG-EQREQLIQE 427
>gi|171057366|ref|YP_001789715.1| poly(A) polymerase [Leptothrix cholodnii SP-6]
gi|170774811|gb|ACB32950.1| poly(A) polymerase [Leptothrix cholodnii SP-6]
Length = 498
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 67/315 (21%), Positives = 125/315 (39%), Gaps = 36/315 (11%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D + +++ L ++ IVGGAVRD L+ +D D+AT P++V F +
Sbjct: 36 PGLVDDRAVKVVTTLQDAGFEAYIVGGAVRDLLLGHRPKDFDVATNATPEQVKSHFRRAF 95
Query: 68 YKVIPTSISYGTIKIICR----KKYFDITTLR--------------------------SD 97
+ + ++ + +++T R
Sbjct: 96 I----IGRRFRIVHVVHGRGREHEVIEVSTFRAKPDASAAEQVSGNEKTSKAALQGKSHV 151
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDA 156
+ +GR + D+ RRDFT+NALY D +G++ +DY G+ D + R ++ IG+
Sbjct: 152 VDAEGRVLRDNVWGPQIDDAARRDFTVNALYYDPRGQIVVDYHNGIADAKKRVLRMIGEP 211
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R ED +RI+R RF A G I+ I+ L + + R++ E+ KLL+
Sbjct: 212 EARYREDPVRIIRVVRFAAKLGF-EIEPATRAPIIRMADLLANVPASRLFDEMIKLLQTG 270
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK 276
+ L ++ + G+ + +F + + D + + D+ R
Sbjct: 271 HSLASLEELRKQGLHRGVFPILDAVLDDAHRHDGREKFIQMALADTDRRVNEGKPVAPSF 330
Query: 277 SILSMAKKFSLPREI 291
+ M + R
Sbjct: 331 MLACMLWHDVIRRRD 345
>gi|326559465|gb|EGE09888.1| poly(A) polymerase [Moraxella catarrhalis 7169]
gi|326566116|gb|EGE16273.1| poly(A) polymerase [Moraxella catarrhalis BC1]
Length = 599
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 68/348 (19%), Positives = 126/348 (36%), Gaps = 11/348 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ ++ L K + IVGG VRDSL+ L+ +D D T P + IF +
Sbjct: 35 IVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIF---GGRCRIIG 91
Query: 75 ISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + ++ ++ T R + DG + D + D RRDF+INALY
Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTEDGMITRDNVWGDIEQDFARRDFSINALY 151
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+G+V+D+ G L D+ + T++ +GDA RI ED +R+LR RF A G +
Sbjct: 152 YQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLGFEFDQDLAN 211
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
L+ +S+ R++ E K+ + ++ G + + L
Sbjct: 212 QFHQDNWTLLEQVSTHRLYDETQKMFGGGYLTPLLPLLFEHGAMSSL-MSFAPNEPTPLM 270
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
V+ D + + ++ L K+ +
Sbjct: 271 MVVARNTDRRIAADKSVNPAFFYAAMLWENYLYQLAKYKKRGLPFHEAQIKAAEKTIDAQ 330
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
I K + + + + K+ + + +
Sbjct: 331 RIKTAIPKFAEQFITDIWLLQPKLVNPRVRDIANLERLPKFRAAFDFL 378
>gi|254456811|ref|ZP_05070239.1| polynucleotide adenylyltransferase region [Campylobacterales
bacterium GD 1]
gi|207085603|gb|EDZ62887.1| polynucleotide adenylyltransferase region [Campylobacterales
bacterium GD 1]
Length = 416
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 74/412 (17%), Positives = 140/412 (33%), Gaps = 20/412 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT--TILPDRVMRIFSKTRYKVIP 72
L I L ++ I+GG +RD L+N+ DIDI +++ I + +
Sbjct: 8 LNKIFEKLENNGARAIIIGGFIRDFLLNIDSDDIDIEVYNVSSFEKLENILKEFG-SINK 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALY 128
S+G K+ D T R D ++ D+ + RRDFTINA+
Sbjct: 67 VGKSFGVCKLKIDNFVLDFTLPRIDSKISSGHSGFDVKIEKDLDFITATRRRDFTINAIG 126
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDG 186
D K I + N + D +ED LR+LR +F + +
Sbjct: 127 YDVVNKTILDPFNGINDLNDKTLKMVDTE-TFIEDPLRVLRAVQFCSRFNLKMDKELFLL 185
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH------MYNGGIFKEIFLDVQE 240
IK ++ LL++ P +
Sbjct: 186 SKTMIKQNSLCELAKERIYDEIKKNLLKSTKPSLGFELLKELGALKYFPSLALREKQTWY 245
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
S+ L ++++ + + + +L L + I K S +EI ++
Sbjct: 246 CSMHALDKIVQLKTTNDKTNE-ILMLASLCYDFNSFQIQDFISKLSNDKEILNRVLVLVE 304
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
K+ + + + I L+ L + ++ +I++ +
Sbjct: 305 NLNAIKSFCLNSFNDYDLFKLSTKVNIEEIIILSESLYGLGNNIKKRAKEL--NILNKQM 362
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
P F L G D++ G+ P +IL + ++ F ++ + L L+
Sbjct: 363 PAF-LRGRDLITSGMKPSCDFSDILEDAYEAQMHGKFSSHKDAITWLRSYLL 413
>gi|148979543|ref|ZP_01815574.1| polyA polymerase [Vibrionales bacterium SWAT-3]
gi|145961727|gb|EDK27023.1| polyA polymerase [Vibrionales bacterium SWAT-3]
Length = 451
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 105/240 (43%), Gaps = 16/240 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN + +VGG VRD L+ +D DIAT P+++ +F R
Sbjct: 35 SDNALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKNLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R G + D+ RRD
Sbjct: 92 -IGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSKEGMLLRDNVYGSVDEDAERRD 150
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+Y + + DY GG+ DL ++ I+ IGD R ED +R+LR RF A
Sbjct: 151 FTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMRFSAKLDF- 209
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+ D LK + + R++ E KLL++ L M +F+++F V E
Sbjct: 210 DIEEDTADPIEGLAHLLKDIPAARLYEESLKLLQSGYGLETYHLMREYNLFQQMFPAVAE 269
>gi|171320262|ref|ZP_02909318.1| poly(A) polymerase [Burkholderia ambifaria MEX-5]
gi|171094491|gb|EDT39549.1| poly(A) polymerase [Burkholderia ambifaria MEX-5]
Length = 516
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 67/379 (17%), Positives = 141/379 (37%), Gaps = 37/379 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 67 LISRNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR---------------------------SDLITDG 102
+ + + ++ +++T R + G
Sbjct: 126 ---IGRRFQIVHVQFGQELIEVSTFRAMVDAPPEAAAAEPPKRLKRDELDRRTHAVDASG 182
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 183 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADIRARLLRMIGDPATRYR 242
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A G I++ + + + R++ E+ KLL + L
Sbjct: 243 EDPVRMLRVVRFAAKLGF-EIETHTREPINALADLINNVPAARLFDEMLKLLLSGQALAC 301
Query: 222 IVHMYNGGIFKEIFLD----VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+ + G+ + +++ ++ + + + L +
Sbjct: 302 LQRLRKEGLHHGLLPLLDVVLEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATLLWHD 361
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ ++++ EI + + I K + ++ +L++
Sbjct: 362 MRQRFEQYTAEGEIPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKRSGR 421
Query: 338 NNLTHQDTCFILQVLSDII 356
+ + + ++
Sbjct: 422 SAMRLLEHQRFRAGYDFLL 440
>gi|94311846|ref|YP_585056.1| poly(A) polymerase [Cupriavidus metallidurans CH34]
gi|93355698|gb|ABF09787.1| poly(A) polymerase I polynucleotide adenylyltransferase
[Cupriavidus metallidurans CH34]
Length = 529
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 36/261 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + S L + ++ IVGGAVRD L+ + +D D+AT P++V +F ++R
Sbjct: 40 LISRNAVKVTSTLQQAGYQAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQALFRRSRI- 98
Query: 70 VIPTSISYGTIKIICRK----KYFDITTLR--------------------------SDLI 99
+ + + + +++T R +
Sbjct: 99 ---IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVASETLPEGRRLKRAELDSKTHAID 155
Query: 100 TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHH 158
GR + D+ RRDFTINA+Y D + DY G+ D+R RT++ IGD
Sbjct: 156 ASGRVLRDNVWGTQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDPVT 215
Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218
R ED +R+LR RF A G +ID + + + S R++ E+ KLL + +
Sbjct: 216 RYREDPVRMLRVVRFAAKTGF-SIDDHTREPIVGLASLIHNVPSARLFDEMLKLLMSGHA 274
Query: 219 LNAIVHMYNGGIFKEIFLDVQ 239
++ + G+ K + +
Sbjct: 275 WASLQELRKAGLHKGLLPLLD 295
>gi|145636731|ref|ZP_01792397.1| polyA polymerase [Haemophilus influenzae PittHH]
gi|145270029|gb|EDK09966.1| polyA polymerase [Haemophilus influenzae PittHH]
Length = 452
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 84/419 (20%), Positives = 157/419 (37%), Gaps = 42/419 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 32 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 88
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D++R
Sbjct: 89 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 148
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + G+F+++F +
Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 268 S-------------SYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPL 314
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 315 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGS 374
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + P F G D++ G G + + W F E L+++
Sbjct: 375 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQFSNG-EQREQLIQE 427
>gi|325524972|gb|EGD02896.1| poly(A) polymerase [Burkholderia sp. TJI49]
Length = 511
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 69/369 (18%), Positives = 135/369 (36%), Gaps = 35/369 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 66 LISRNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 124
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR---------------------------SDLITDG 102
+ + + ++ +++T R + G
Sbjct: 125 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPPEAAAAEPPKRLKRDELDRRTHAVDASG 181
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 182 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRYR 241
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A G I+ + + + R++ E+ KLL + + L
Sbjct: 242 EDPVRMLRVVRFAAKLGF-EIEPHTREPIHALADLINNVPAARLFDEMLKLLLSGHALAC 300
Query: 222 IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 301 LQRLRKEGLHHGLLPLLDVV--LEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATLLW 358
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
+ + + ++ + L L +
Sbjct: 359 HDMRQRFEQYTAEGEFPVPALHRAMDDVLDMQTEKLAIHKRYSADMREIWGLQLRLEKRS 418
Query: 342 HQDTCFILQ 350
+ +L+
Sbjct: 419 GRSALRLLE 427
>gi|145642144|ref|ZP_01797713.1| polyA polymerase [Haemophilus influenzae R3021]
gi|145273135|gb|EDK13012.1| polyA polymerase [Haemophilus influenzae 22.4-21]
Length = 509
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 82/420 (19%), Positives = 154/420 (36%), Gaps = 44/420 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ + ++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 89 FSRNALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 145
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLI-----------TDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D+ R
Sbjct: 146 RLVGRRFRLAHIMFGRDIIEVATFRANHNDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 205
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 206 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 265
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + G+F+++F +
Sbjct: 266 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 324
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 325 SPY-------------FTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYLL 371
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 372 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGS 431
Query: 355 --IIHWKKPLFPLTGD-DVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + P F D++ G G + + W F E L+++
Sbjct: 432 APMRTMEHPKF--RAAFDLLAMRAEIEG---GETI-ELAKWWHEYQFSNG-EQREQLIQE 484
>gi|119512844|ref|ZP_01631911.1| polyA polymerase [Nodularia spumigena CCY9414]
gi|119462517|gb|EAW43487.1| polyA polymerase [Nodularia spumigena CCY9414]
Length = 470
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 149/432 (34%), Gaps = 48/432 (11%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLS------VQDIDIATTIL--------PDRVMRIFSK 65
K +VGGAVRD L+ S + DID+ + + +
Sbjct: 45 QAAEKRGWHLYLVGGAVRDLLLAESAAGSLMITDIDLVVDGFHQAADVGAGVELAKALQE 104
Query: 66 TR-YKVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
+ ++ T ++ K + DI T R++ V + D
Sbjct: 105 IYPGARLEIHGAFQTAALLWHKDPELDSLWMDIATARTEFYPYPAANPEVEASSIRQDLY 164
Query: 119 RRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
RRDF+INAL + G+++D+ GGL DL+ + I+ + + +ED RI R RF
Sbjct: 165 RRDFSINALALRLTSPRSGELLDFFGGLIDLQAKQIRVLHP--NSFIEDPTRIYRAVRFA 222
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWS----------EINKLLEAKNPLNAIVH 224
+G + G+ +++ E+ +L+ +A+
Sbjct: 223 VRFGFEIEAQTEEFIHYAINSGVYDRTAQTNIKTPALQTRLKAELKYILQTPYWKSALQL 282
Query: 225 MYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI-----VLISWQDKKSIL 279
+ G + I ++ + + + + L LI+ + +
Sbjct: 283 LNQLGALQCIHPTLKLDESLLQQLRLLERCLRRFDSEQTLIHWEMRLEALIAHLEPQYRE 342
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+AK LP + L + + L + + + + I +AL
Sbjct: 343 KVAKNLHLPEDGIKRLQNLDKAQTTVRELLPTCQRPSQVVQLLRKYDLPMLILIALPSPR 402
Query: 340 LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399
+ + L VL+++ L G+D+ + G PGK+ +L + ++ +
Sbjct: 403 ILRKQIWHYLTVLANV------QPILNGNDLKQLGYKPGKQFRQMLDDLRAATLDGVIKN 456
Query: 400 SQEDLHHLLRKL 411
E L
Sbjct: 457 RTEAEEFLAENY 468
>gi|291287438|ref|YP_003504254.1| Polynucleotide adenylyltransferase region [Denitrovibrio
acetiphilus DSM 12809]
gi|290884598|gb|ADD68298.1| Polynucleotide adenylyltransferase region [Denitrovibrio
acetiphilus DSM 12809]
Length = 881
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 64/405 (15%), Positives = 130/405 (32%), Gaps = 20/405 (4%)
Query: 24 KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
+ K +VGG VRD L+ + +DIDI + F+ + + T +I
Sbjct: 480 EQGFKCYLVGGVVRDILLRKNNEDIDIVVEGSAPAFAKKFAAKHNARVAVHAKFKTAVVI 539
Query: 84 C-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
D T R++ A V + D RRDF+INA+ +
Sbjct: 540 FPDGFRVDFATSRTEYYNFPASAPTVEDASIRNDLFRRDFSINAMAVKLNNSEFGTLLDF 599
Query: 143 NDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK-KGLKI 199
+ ++D R LR RF + +
Sbjct: 600 FGGQRDISDRKIRVLHSLSFVDDPSRALRAIRFAVRFDFSIGPHTDRLFKHAVSLNLFDR 659
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI----FLDVQEISLDQLSQVIEAEQV 255
+ R++ E+ +L KN A+ M + + +D ++ +L + ++I
Sbjct: 660 VIGPRMFLELKYILNEKNYTKALDMMKKYDMIRFFSKKVQMDDRKTALFEGLELILDWYS 719
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT----LSIP 311
F+++ + L I + + + N K +S
Sbjct: 720 FQFEDEFELYVSRFIVLFWELDREDIGDLLDRFQLDDGKTKELLNNYIETKDVVNAVSRR 779
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
+ + Y + +L A+ + + + ++ ++ + G+D+
Sbjct: 780 NVNRPSYFT---QFMDRLSTPCAVAASAVLGEQFEPYVK--DYFTDYRFVKADIDGNDLK 834
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH---LLRKLIA 413
+ G+ P IL K E I+ + L ++L+
Sbjct: 835 EAGVKPLMIYSKILSSLKNEKIDGKCLGRDAQMKRALVLAKELVK 879
>gi|152979389|ref|YP_001345018.1| poly(A) polymerase [Actinobacillus succinogenes 130Z]
gi|150841112|gb|ABR75083.1| poly(A) polymerase [Actinobacillus succinogenes 130Z]
Length = 421
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 77/426 (18%), Positives = 146/426 (34%), Gaps = 54/426 (12%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + ++ LN+ ++ IVGG +RD L+ +D D+AT P+++ +F +
Sbjct: 1 MISKNALTVVEKLNRNGYEAYIVGGCLRDLLLGKKPKDFDVATNARPEQIQTVFQRQ--- 57
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSL 118
+ ++ + ++ T R+ DG + + D+
Sbjct: 58 CRLVGRRFRLAHVMFGRDVIEVATFRAHHAESKNENQARRNEDGMLLRDNVYGTLEQDAE 117
Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 118 RRDFTVNALYYNPKDNTIHDYYHGIEDLKAGKLRLIGDPATRYQEDPVRMLRSIRFMAKL 177
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+D K LK + R++ E KLL+A L M G+F ++F
Sbjct: 178 DMF-LDKPSEEPIRKLAPLLKNIPPARLFDESLKLLQAGAGLKTYRLMCEYGLFDQLFPA 236
Query: 238 VQEISLDQLSQVIEAE-------------QVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284
+ ++ E L ++K +L
Sbjct: 237 LMPYFTEKNDSFAERMIEKALTSTDERIADKLRINPAFLFAAFFWYPLREKVEMLKNEGG 296
Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344
+ + + ++ S I + + +L++ T +
Sbjct: 297 LNN-----HDAYALATNEMLEQCCSALAIPRRHTSVIRDIWFLQLQLMKRAGRFPATTMN 351
Query: 345 TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
+ ++ I G+ + W F +E
Sbjct: 352 HPKFRAAYDLLA--------------MRAEIEGGEAI-----ELAIWWHEYQFSN-EEQR 391
Query: 405 HHLLRK 410
HHL+++
Sbjct: 392 HHLVKE 397
>gi|302325873|gb|ADL25074.1| polyA polymerase family protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 411
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 63/408 (15%), Positives = 143/408 (35%), Gaps = 22/408 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPT 73
L++I + + ++ +VGG VRD+L+ + +D D+ ++ D ++ I K +
Sbjct: 5 LLSIAGEIREAGGRAFLVGGWVRDALLGKNCRDYDVEVYDLVQDELVPILKKYG-RTNLV 63
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYA 129
++G I + + D + R++ + V D +K +LRRDFTINA+
Sbjct: 64 GKAFGVIHLAMKGLSLDFSFPRTESKVGYGHRGFVVHTDEKLSFKEAALRRDFTINAMGM 123
Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ + + D GG++DL+ ++ +G A +ED LRILR +F + + K + +
Sbjct: 124 ELPELTLCDPYGGIDDLKKGLLRHVGPA---FVEDSLRILRGVQFASRFALK--LAPETI 178
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV-----HMYNGGIFKEIFLDVQEISL 243
+ + LL+ P + + +
Sbjct: 179 ELCRTLSLEDLSIERLFEEFKKWLLKPGKPSLGLRAFLDIKLNEFFPEVSPLRGSWDDLG 238
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF----- 298
+ L F +S + S+ + + + ++ +
Sbjct: 239 EMLDNTESLRDNLSDDQVMEFAFAAFLSGSPETSLKFLERITNETHLVKNVPLLLNAYST 298
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ ++ + ++ K + +
Sbjct: 299 LDFAIVSDAPALRRMAVKLGGLKLLCLLVKATPRKYYAAAGASEFPEQLWQAAADLDLIE 358
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
P L G +++ G PGK++G + + ++ + ++E +
Sbjct: 359 AAPQPFLMGKMLMEMGFKPGKQMGETIKQSFELQLDGKIKNAEEAIAW 406
>gi|254482604|ref|ZP_05095843.1| poly(A) polymerase subfamily protein [marine gamma proteobacterium
HTCC2148]
gi|214037295|gb|EEB77963.1| poly(A) polymerase subfamily protein [marine gamma proteobacterium
HTCC2148]
Length = 432
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 69/368 (18%), Positives = 135/368 (36%), Gaps = 28/368 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ ++S L ++ +VGGAVRD L+ + +D DIAT P+ V +F +R
Sbjct: 17 SDSALKVMSRLRSQGHQAYLVGGAVRDLLLGSNPKDFDIATDATPEEVHGLFRNSRI--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----------------WK 114
+ + + ++ ++TT R + +
Sbjct: 74 -IGRRFRIVHVRFGREIIEVTTFRGHHEGGNEASPATGGNHSRQSDKGLLLRDNVYGTLE 132
Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
D++RRD T+NALY D + +V D+V GL DL R I IG+ R ED +R+LR RF
Sbjct: 133 EDAVRRDLTVNALYYDSGKFEVFDHVNGLTDLEKRQICIIGEPAVRYREDPVRMLRTVRF 192
Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
A +I+ + A L+ + S R++ E KL + + + + +
Sbjct: 193 AAKLNF-DIEKNTAKAIPACAALLREIPSARLFDEFLKLFLSGYAAATLEQLLEHDLLQF 251
Query: 234 IFLDV-----QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+F + Q+ L + A D + +++ ++ A +
Sbjct: 252 LFDETSHLLHQDAMSLALVRAAMANTDKRIADDKPVTPAFILAALLWPVVVRTAAQQENR 311
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
+ + + + I + F ++ +L++ +
Sbjct: 312 GDPPMVAMHNASQQTISEASQQLSIPRRFSQPMREIWEFQLRLQRRQGKKAAELVEHRRF 371
Query: 349 LQVLSDII 356
++
Sbjct: 372 RAAYDFLL 379
>gi|121595306|ref|YP_987202.1| poly(A) polymerase [Acidovorax sp. JS42]
gi|120607386|gb|ABM43126.1| poly(A) polymerase [Acidovorax sp. JS42]
Length = 531
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/265 (22%), Positives = 115/265 (43%), Gaps = 37/265 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D +++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 40 PELVDRRASDVVRTLKQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKSLFRRAF 99
Query: 68 YKVIPTSISYGTIKIICR----KKYFDITTLRSDLIT----------------------- 100
+ + ++ + +++T R+ +
Sbjct: 100 I----IGKRFRIVHVVHGRGREHEVIEVSTFRAYMDNAAAEQVGGNEKTSKAQLAGMHHA 155
Query: 101 ---DGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156
GR + D+ RRDFT+NA+Y D + + V+D+ G+ D + R ++ IGD
Sbjct: 156 VDASGRVLRDNVWGPQDEDATRRDFTVNAMYYDPETEVVVDFHKGIEDAKKRVLRMIGDP 215
Query: 157 HHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214
R ED +RI+R RF A ++ ++ + L+ + R++ E+ KLL+
Sbjct: 216 ATRYREDPVRIIRAVRFAAKLSPLGFALEPKTAKPLVECEPLLREVPQSRLFDEMLKLLQ 275
Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ L +I + + G+ I+ +
Sbjct: 276 TGHALASIAQLKSLGLATGIYPLLD 300
>gi|17547346|ref|NP_520748.1| polynucleotide adenylyltransferase [Ralstonia solanacearum GMI1000]
gi|17429649|emb|CAD16334.1| probable polynucleotide adenylyltransferase protein [Ralstonia
solanacearum GMI1000]
Length = 514
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/263 (23%), Positives = 111/263 (42%), Gaps = 36/263 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++R
Sbjct: 63 PKLLSRNAVKVTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVEALFRRSR 122
Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLR--------------------------SD 97
+ + + + +++T R
Sbjct: 123 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHA 178
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFT+NA+Y + V DY G+ D+R R ++ IGD
Sbjct: 179 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHRGMEDMRARLLRMIGDP 238
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
H R ED +R+LR RF A G +ID + + + + R++ E+ KLL +
Sbjct: 239 HTRYREDPVRMLRVVRFAAKTGF-DIDPATRAPIAELGPLIHNVPAARLFDEMLKLLMSG 297
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ 239
+ ++ + G+ + + +
Sbjct: 298 HAWASLQELRKAGLHRGLLPLLD 320
>gi|107021834|ref|YP_620161.1| poly(A) polymerase [Burkholderia cenocepacia AU 1054]
gi|105892023|gb|ABF75188.1| poly(A) polymerase [Burkholderia cenocepacia AU 1054]
Length = 518
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 69/371 (18%), Positives = 134/371 (36%), Gaps = 37/371 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 67 LISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-----------------------------SDLIT 100
+ + + + +++T R +
Sbjct: 126 ---IGRRFQIVHVQFGQDLIEVSTFRALVDAPPEAAAATAEPPRRLKRDELDRRTHAVDA 182
Query: 101 DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHR 159
GR + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 183 SGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATR 242
Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219
ED +R+LR RF A G I+ + + + R++ E+ KLL + + L
Sbjct: 243 FREDPVRMLRVVRFAAKLGF-EIEPHTREPIHALADLINNVPAARLFDEMLKLLLSGHAL 301
Query: 220 NAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 302 ARLQRLRKEGLHHGLLPLLDVV--LEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATL 359
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ + + ++ + L L
Sbjct: 360 LWHDMRQRFEQYTAAGEIPVPALHRAMDDVLDMQTEKLAIHKRYSADMREIWGLQLRLEK 419
Query: 340 LTHQDTCFILQ 350
+ + +L+
Sbjct: 420 RSGRSAMRLLE 430
>gi|184156907|ref|YP_001845246.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter
baumannii ACICU]
gi|183208501|gb|ACC55899.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter
baumannii ACICU]
Length = 487
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 53/279 (18%), Positives = 120/279 (43%), Gaps = 9/279 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S +++++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + +
Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGR---RCRI 74
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ ++ T R+ G + + D RRDF+IN L
Sbjct: 75 VGRRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134
Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y + ++ D+ ++D++++T++ +GD R ED +R+LR RF A K +
Sbjct: 135 YYQPRKGIVLDFCKAIDDVKSKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFKIDSAIL 194
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ ++ + L+ +S R++ E KL + + + + G++K++F D++ +
Sbjct: 195 DIFDVEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIDFGVWKQLFADIRPDLTPFI 254
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + ++ + +
Sbjct: 255 QRAAKNTDQRIQVGKTINPAFFYAVLLWQPFLERCDFYL 293
>gi|86610318|ref|YP_479080.1| polyA polymerase family protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558860|gb|ABD03817.1| polyA polymerase family protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 908
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 73/431 (16%), Positives = 144/431 (33%), Gaps = 43/431 (9%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL---------SVQDIDIATTI----------- 54
L + ++ + +VGG VRD L++ D+D+
Sbjct: 473 LEQAAHIADEKGLRLYLVGGTVRDLLLHRWGRQPSPNLERLDLDLVVDGPYSPALDGIDP 532
Query: 55 ------LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKV 107
L + + F + R + T +I DI + R++
Sbjct: 533 PGWGLILGQALKQHFPEARL---EIHGKFQTAALIWPGGFCVDIASARTEFYPYPASPPE 589
Query: 108 VFTRDWKADSLRRDFTINALYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILED 163
V + D RRDF+INAL G +V+D+ GG DL+ I+ + + +ED
Sbjct: 590 VAMGSIQQDLYRRDFSINALALRLNGPQRGQVLDFFGGQADLQQGIIRALHP--NSFIED 647
Query: 164 YLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222
RI R RF G + ++ + + A + +R+ E+ +L +++ A
Sbjct: 648 PTRIYRAVRFAVRLGFALDSTTEKWIRAAVASGLHDAVGGDRLKQELAYILGSRDWPQAF 707
Query: 223 VHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ G + I D++ +L +V F + L + + +
Sbjct: 708 EQLAEWGALRCIHPDLEWDPSLCRRLQRVGRWAYHFRRRYPELGSQEIWQLRLEALLLTL 767
Query: 281 MAKKFSLPR-EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ + I + + +TL ++ L+I +
Sbjct: 768 PQAPQVASQLHLTQAGIERLSHSSYYQTLLAQLDPGTLSPAQVVQLLQGLRIPAVILLAG 827
Query: 340 LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399
+ + + + + W L G D+ + G PG+ IL + +N
Sbjct: 828 IAPKPARRL--IWRYLQEWYWVKPLLNGHDLRRLGYKPGRPFQAILEQLRCLTLNGELTT 885
Query: 400 SQEDLHHLLRK 410
E L++
Sbjct: 886 PAEA-EAWLQE 895
>gi|239814474|ref|YP_002943384.1| poly(A) polymerase [Variovorax paradoxus S110]
gi|239801051|gb|ACS18118.1| poly(A) polymerase [Variovorax paradoxus S110]
Length = 546
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/263 (23%), Positives = 115/263 (43%), Gaps = 37/263 (14%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D N+++ L + ++ +VGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 40 LVDERARNVVTTLQQAGYEAYVVGGAVRDLLLGLRPKDFDVATNATPEQVKSLFRRAFI- 98
Query: 70 VIPTSISYGTIKIICR----KKYFDITTLRSDLIT------------------------- 100
+ + ++ + +++T R+ +
Sbjct: 99 ---IGRRFRIVHVVYGRGREHEVIEVSTFRAYMDNAAAEQVAGNERTSKGELASMKHAVD 155
Query: 101 -DGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHH 158
GR + + D+ RRDFT+NA+Y D V+DY G+ D + T++ IGD
Sbjct: 156 ASGRVLRDNVWGPQEEDAARRDFTVNAMYYDPANQVVVDYHNGIRDAQKLTLRMIGDPAT 215
Query: 159 RILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R ED +RI+R RF A +++ +++ K L + R++ E+ KLL+
Sbjct: 216 RYREDPVRIIRAIRFSAKLAALGFKMEAKTAAPLVESSKLLADVPQSRLFDEMLKLLQTG 275
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ 239
+ + + + G+ K I+ +
Sbjct: 276 HAIATVEQLRKLGLAKGIYPLLD 298
>gi|222111590|ref|YP_002553854.1| poly(a) polymerase [Acidovorax ebreus TPSY]
gi|221731034|gb|ACM33854.1| poly(A) polymerase [Acidovorax ebreus TPSY]
Length = 531
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/265 (22%), Positives = 115/265 (43%), Gaps = 37/265 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D +++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 40 PELVDRRASDVVRTLKQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKSLFRRAF 99
Query: 68 YKVIPTSISYGTIKIICR----KKYFDITTLRSDLIT----------------------- 100
+ + ++ + +++T R+ +
Sbjct: 100 I----IGKRFRIVHVVHGRGREHEVIEVSTFRAYMDNAAAEQVGGNEKTSKAQLAGMHHA 155
Query: 101 ---DGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156
GR + D+ RRDFT+NA+Y D + + V+D+ G+ D + R ++ IGD
Sbjct: 156 VDASGRVLRDNVWGPQDEDATRRDFTVNAMYYDPETEVVVDFHKGIEDAKKRVLRMIGDP 215
Query: 157 HHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214
R ED +RI+R RF A ++ ++ + L+ + R++ E+ KLL+
Sbjct: 216 ATRYREDPVRIIRAVRFAAKLSPLGFALEPKTAKPLVECEPLLREVPQSRLFDEMLKLLQ 275
Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ L +I + + G+ I+ +
Sbjct: 276 TGHALASIAQLKSLGLATGIYPLLD 300
>gi|166365960|ref|YP_001658233.1| hypothetical protein MAE_32190 [Microcystis aeruginosa NIES-843]
gi|166088333|dbj|BAG03041.1| hypothetical protein MAE_32190 [Microcystis aeruginosa NIES-843]
Length = 898
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 76/436 (17%), Positives = 152/436 (34%), Gaps = 51/436 (11%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-----DIDIATTI--------LPDRVMR 61
L + + K +VGGAVRD L+ DID+ +
Sbjct: 468 LQSAAAAAQKRGWHLYLVGGAVRDLLLAAERDTLLLQDIDLVVDGCHRAAGVGAGVELAN 527
Query: 62 IFSKTR-YKVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWK 114
+ + + T ++ K + DI T R++ V +
Sbjct: 528 CLREIYPGARLSIHGEFQTAALLWHKDERFGSLWVDIATARTEFYPYPASNPQVEASSIR 587
Query: 115 ADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170
D RRDFTIN+L ++G+++D+ GG+ DLR + I+ + + +ED RI R
Sbjct: 588 QDLYRRDFTINSLAIRLTSPKEGELLDFFGGMLDLRAQEIRVLHA--NSFIEDPTRIYRA 645
Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS----------EINKLLEAKNPLN 220
RF G + G+ S ++ + E+N +LEA +
Sbjct: 646 VRFATRLGFVIEPLTENYIRYAIESGVYERSRQQNQNAPALQSRLKAELNYILEADYWES 705
Query: 221 AIVHMYNGGIFKEIFLDVQ-----EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK 275
A+ + G + ++ L LS+ ++ + L+R +LI+
Sbjct: 706 ALEKLAELGALHCLHGNLSLNQALWRQLRCLSRWLDCLSLELPVNAWLMRLELLIASLAV 765
Query: 276 KSILSMAKKFSLPRE--IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333
+++A LP++ R + + + ++ + + + L + +
Sbjct: 766 GERIAIANNLQLPKDTVERLQKLEVMEREISNNFAYDQPVSQIVSFFNGYRVPSLLLVAV 825
Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
+ + W + P+ G+D+ G PG + ++L +
Sbjct: 826 RSQTRIRAL--------IWQYLTKWSQIEAPIDGNDLKALGYQPGPQFKSLLAAVLGATL 877
Query: 394 NSSFQLSQEDLHHLLR 409
+ E + + R
Sbjct: 878 DGMVSNKSEAMAFIAR 893
>gi|153003178|ref|YP_001377503.1| poly(A) polymerase [Anaeromyxobacter sp. Fw109-5]
gi|152026751|gb|ABS24519.1| poly(A) polymerase [Anaeromyxobacter sp. Fw109-5]
Length = 548
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 69/240 (28%), Positives = 101/240 (42%), Gaps = 16/240 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D+D + +++ L ++ VGG VRD L+ +D D+AT P V IF R
Sbjct: 52 DADAVRVIARLRHMRHRAYFVGGCVRDLLLGAKPKDFDVATDAHPGEVRAIFRNCRL--- 108
Query: 72 PTSISYGTIKIIC-RKKYFDITTLRSDLITDGR---------YAKVVFTRDWKADSLRRD 121
+ + K ++ T R + + G + + D++RRD
Sbjct: 109 -IGRRFRLAHVYFRGGKVIEVATFRKNPVDVGEDVPDTDDLLITRDNVFGTAEEDAVRRD 167
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+N L+ D G+VIDYVGG DL R I IGD R+ ED +R+LR RF A G
Sbjct: 168 FTVNGLFYDVATGEVIDYVGGREDLEARRIATIGDPEIRMREDPVRLLRAVRFAARLGFI 227
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
I D A + L + R+ EI K+L A + G I +
Sbjct: 228 -IAPDTFEAMRRHASELARCAPARVLEEIFKILRCGGSARAFELLRASGALPVILPALAA 286
>gi|326572823|gb|EGE22808.1| poly(A) polymerase [Moraxella catarrhalis CO72]
Length = 599
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 68/348 (19%), Positives = 126/348 (36%), Gaps = 11/348 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ ++ L K + IVGG VRDSL+ L+ +D D T P + IF +
Sbjct: 35 IVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIF---GGRCRIIG 91
Query: 75 ISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + ++ ++ T R + DG + D + D RRDF+INALY
Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNVWGDIEQDFARRDFSINALY 151
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+G+V+D+ G L D+ + T++ +GDA RI ED +R+LR RF A G +
Sbjct: 152 YQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLGFEFDQDLAN 211
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
L+ +S+ R++ E K+ + ++ G + + L
Sbjct: 212 QFHQDNWTLLEQVSAHRLYDETQKMFGGGYLTPLLPLLFEHGAMSSL-MSFAPNEPTPLM 270
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
V+ D + + ++ L K+ +
Sbjct: 271 MVVAQNTDRRIAADKSVNPAFFYAAMLWENYLYQLAKYKKRGLPFHEAQIKAAEKTIDAQ 330
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
I K + + + + K+ + + +
Sbjct: 331 RIKTAIPKFAEQFITDIWLLQPKLVNPRVRDIANLERLPKFRAAFDFL 378
>gi|886309|gb|AAB53125.1| polyA polymerase [Mycobacterium leprae]
Length = 411
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 20/290 (6%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTRYK 69
H L ++ S+ + +VGG+VRD+L+ D+D AT P++V +I +
Sbjct: 21 HTPVLRDLGSVFAASGHELYLVGGSVRDALLGRLDSPDLDFATDAGPEQVQQIMRRWADN 80
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY 128
+ T I +GTI + +ITT R+D R +V F+ D +RRDFT+NA+
Sbjct: 81 LWETGIEFGTIGVGKGDYRLEITTFRADRYDQVSRNPEVRFSDRLDDDLVRRDFTVNAMA 140
Query: 129 A----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
G+ D +GGL LR R ++ +D LRI+R RF + G +
Sbjct: 141 VRIASYGPGEFFDPLGGLAALRVRVLETPAAPSVSFGDDPLRIVRAARFVSQLGF-TVAP 199
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------ 238
A + L +S+ER+ +E++KLL + I + G+ + + ++
Sbjct: 200 QVHAAIEEMASQLARISAERVSTELDKLLLGNDAAAGIDLLVQTGMGEVVLPEIGDMRMA 259
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281
+++ L+ + +A + + D +LR+ L+ K +
Sbjct: 260 IDEHHQHKDVYQHSLTVLRQAIALEDNGPDLVLRWAALLHDIGKPATRRH 309
>gi|326567818|gb|EGE17922.1| poly(A) polymerase [Moraxella catarrhalis 12P80B1]
gi|326568180|gb|EGE18262.1| poly(A) polymerase [Moraxella catarrhalis BC8]
Length = 599
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 68/348 (19%), Positives = 126/348 (36%), Gaps = 11/348 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ ++ L K + IVGG VRDSL+ L+ +D D T P + IF +
Sbjct: 35 IVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIF---GGRCRIIG 91
Query: 75 ISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + ++ ++ T R + DG + D + D RRDF+INALY
Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNVWGDIEQDFARRDFSINALY 151
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+G+V+D+ G L D+ + T++ +GDA RI ED +R+LR RF A G +
Sbjct: 152 YQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLGFEFDQDLAN 211
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
L+ +S+ R++ E K+ + ++ G + + L
Sbjct: 212 QFHQDNWTLLEQVSAHRLYDETQKMFGGGYLTPLLPLLFEHGAMSSL-MSFAPNEPTPLM 270
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
V+ D + + ++ L K+ +
Sbjct: 271 MVVAQNTDRRIAADKSVNPAFFYAAMLWENYLYQLAKYKKRGLPFHEAQIKAAEKTIDAQ 330
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
I K + + + + K+ + + +
Sbjct: 331 RIKTAIPKFAEQFITDIWLLQPKLVNPRVRDIANLERLPKFRAAFDFL 378
>gi|170698323|ref|ZP_02889398.1| poly(A) polymerase [Burkholderia ambifaria IOP40-10]
gi|170136742|gb|EDT04995.1| poly(A) polymerase [Burkholderia ambifaria IOP40-10]
Length = 512
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 67/379 (17%), Positives = 141/379 (37%), Gaps = 37/379 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 67 LISRNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR---------------------------SDLITDG 102
+ + + ++ +++T R + G
Sbjct: 126 ---IGRRFQIVHVQFGQELIEVSTFRAMVDAPPEAAAAEPPKRLKRDELDRRTHAVDASG 182
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 183 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADIRARLLRMIGDPATRYR 242
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A G I++ + + + R++ E+ KLL + L
Sbjct: 243 EDPVRMLRVVRFAAKLGF-EIETHTREPINALADLINNVPAARLFDEMLKLLLSGQALAC 301
Query: 222 IVHMYNGGIFKEIFLD----VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+ + G+ + +++ ++ + + + L +
Sbjct: 302 LQRLRKEGLHHGLLPLLDVVLEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATLLWHD 361
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ ++++ EI + + I K + ++ +L++
Sbjct: 362 MRQRFEQYTAEGEIPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKRSGR 421
Query: 338 NNLTHQDTCFILQVLSDII 356
+ + + ++
Sbjct: 422 SAMRLLEHQRFRAGYDFLL 440
>gi|299065813|emb|CBJ36991.1| poly(A) polymerase I [Ralstonia solanacearum CMR15]
Length = 515
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/263 (23%), Positives = 111/263 (42%), Gaps = 36/263 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++R
Sbjct: 63 PKLLSRNAVKVTSTLQEAGYGAFIVGGAVRDLLLGIKPKDFDVATNATPEQVEALFRRSR 122
Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLR--------------------------SD 97
+ + + + +++T R
Sbjct: 123 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHA 178
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFT+NA+Y + V DY G+ D+R R ++ IGD
Sbjct: 179 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHHGMEDMRARLLRMIGDP 238
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
H R ED +R+LR RF A G +ID + + + + R++ E+ KLL +
Sbjct: 239 HTRYREDPVRMLRAVRFAAKTGF-DIDPATRAPIAELGALIHNVPAARLFDEMLKLLMSG 297
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ 239
+ ++ + G+ + + +
Sbjct: 298 HAWASLQELRKAGLHRGLLPLLD 320
>gi|170717755|ref|YP_001784822.1| poly(A) polymerase [Haemophilus somnus 2336]
gi|168825884|gb|ACA31255.1| poly(A) polymerase [Haemophilus somnus 2336]
Length = 457
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 16/241 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ ++++ L++ ++ IVGG +RD L+ +D D+AT P++V IF +
Sbjct: 36 MISRNALSVVEKLHRNGYEAYIVGGCLRDLLLGKKPKDFDVATNAKPEQVQAIFQRQ--- 92
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSL 118
+ I+ + ++ T R+ + G + + D+
Sbjct: 93 CRLVGRRFRLAHIMFGRDIIEVATFRAAHTDNHNERQAKQNNAGMLLRDNVYGTIEQDAE 152
Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NA Y + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 153 RRDFTVNAFYYNPQNNTLRDYFNGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSIRFMAKL 212
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+D K LK + R++ E KLL+A + + G+F ++F
Sbjct: 213 DMF-LDKPSQEPIKKMAHLLKNIPPARLFDESVKLLQAGYGIKTYQLLREYGLFDQLFPT 271
Query: 238 V 238
+
Sbjct: 272 L 272
>gi|172059737|ref|YP_001807389.1| poly(A) polymerase [Burkholderia ambifaria MC40-6]
gi|171992254|gb|ACB63173.1| poly(A) polymerase [Burkholderia ambifaria MC40-6]
Length = 512
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 67/379 (17%), Positives = 141/379 (37%), Gaps = 37/379 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 67 LISRNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR---------------------------SDLITDG 102
+ + + ++ +++T R + G
Sbjct: 126 ---IGRRFQIVHVQFGQELIEVSTFRAMVDAPPEAAAAEPPKRLKRDELDRRTHAVDASG 182
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 183 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADIRARLLRMIGDPATRYR 242
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A G I++ + + + R++ E+ KLL + L
Sbjct: 243 EDPVRMLRVVRFAAKLGF-EIETHTREPINALADLINNVPAARLFDEMLKLLLSGQALAC 301
Query: 222 IVHMYNGGIFKEIFLD----VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+ + G+ + +++ ++ + + + L +
Sbjct: 302 LQRLRKEGLHHGLLPLLDVVLEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATLLWHD 361
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ ++++ EI + + I K + ++ +L++
Sbjct: 362 MRQRFEQYTAEGEIPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKRSGR 421
Query: 338 NNLTHQDTCFILQVLSDII 356
+ + + ++
Sbjct: 422 SAMRLLEHQRFRAGYDFLL 440
>gi|326573733|gb|EGE23691.1| poly(A) polymerase [Moraxella catarrhalis O35E]
Length = 599
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 68/348 (19%), Positives = 126/348 (36%), Gaps = 11/348 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ ++ L K + IVGG VRDSL+ L+ +D D T P + IF +
Sbjct: 35 IVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIF---GGRCRIIG 91
Query: 75 ISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + ++ ++ T R + DG + D + D RRDF+INALY
Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNVWGDIEQDFARRDFSINALY 151
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+G+V+D+ G L D+ + T++ +GDA RI ED +R+LR RF A G +
Sbjct: 152 YQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLGFEFDQDLAN 211
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
L+ +S+ R++ E K+ + ++ G + + L
Sbjct: 212 QFHQDNWTLLEQVSAHRLYDETQKMFGGGYLTPLLPLLFEHGAMSSL-MSFAPNEPTPLM 270
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
V+ D + + ++ L K+ +
Sbjct: 271 MVVARNTDRRIAADKSVNPAFFYAAMLWENYLYQLAKYKKRGLPFHEAQIKAAEKTIDAQ 330
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
I K + + + + K+ + + +
Sbjct: 331 RIKTAIPKFAEQFITDIWLLQPKLVNPRVRDIANLERLPKFRAAFDFL 378
>gi|71064695|ref|YP_263422.1| hypothetical protein Psyc_0114 [Psychrobacter arcticus 273-4]
gi|71037680|gb|AAZ17988.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 745
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 71/352 (20%), Positives = 131/352 (37%), Gaps = 17/352 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +++ L + + IVGG VRD+L+ L +D D T P + +F K +
Sbjct: 20 ITEVIATLTRAGFDAYIVGGGVRDTLLGLRPKDFDAVTDAKPHEIKDVFGK---RCRIIG 76
Query: 75 ISYGTIKIICRKKYFDITTLRSDL------ITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + ++ ++ T R DG + D K D RRDF+INALY
Sbjct: 77 RRFQLAHVYSGRELIEVATFRGPPINDSNTNQDGMILRDNVWGDIKQDFARRDFSINALY 136
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+G V D+ G L D+ N+ I+ +G+A RI ED +R+LR RF A G
Sbjct: 137 YQPLKGVVHDFCGALEDIDNKIIRLLGNAPIRIEEDPVRLLRALRFKAKLGFDFDSELAA 196
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--EIFLDVQEISLDQ 245
L+ +S R++ E K+ + + ++ G I+ + +L Q
Sbjct: 197 QFHDGNWSLLEQISPHRLYDETQKMFTGGYLVPLLPLLFESGAIDSLIIYPPSEPSALVQ 256
Query: 246 LSQVIEAEQV-FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ +++ I+ + L+ + K+ + +
Sbjct: 257 QVAINTDKRIGAGKSINPAFFYAALLWENYLHQLEKAKKRNMPFADAQMHAAGKVIDRQR 316
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
KT I K + + I + K+ + + ++
Sbjct: 317 IKT----AIPKFAEQFIRDIWILQPKLAAPRSKQIVQLSEHPRFRAGFDFLL 364
>gi|93004954|ref|YP_579391.1| poly(A) polymerase [Psychrobacter cryohalolentis K5]
gi|92392632|gb|ABE73907.1| poly(A) polymerase [Psychrobacter cryohalolentis K5]
Length = 753
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 69/352 (19%), Positives = 132/352 (37%), Gaps = 17/352 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +++ L + + IVGG VRD+L+ L +D D T P + +F K +
Sbjct: 20 ITEVIATLTRAGFDAYIVGGGVRDTLLGLRPKDFDAVTDAKPHEIKDVFGK---RCRIIG 76
Query: 75 ISYGTIKIICRKKYFDITTLRSDL------ITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + ++ ++ T R DG + D K D RRDF+INALY
Sbjct: 77 RRFQLAHVYSGRELIEVATFRGPPINDSNTNQDGMILRDNVWGDIKQDFARRDFSINALY 136
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+G V D+ L D+ N+ I+ +G+A RI ED +R+LR RF A G +
Sbjct: 137 YQPLKGIVHDFCDALEDIDNKIIRLLGNAPIRIEEDPVRLLRALRFKAKLGFEFDSELAA 196
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--EIFLDVQEISLDQ 245
L+ +S R++ E K+ + + +++ G I+ + +L +
Sbjct: 197 QFHDGNWSLLEQISPHRLYDETQKMFTGGYLVPLLPLLFDSGAIDSLIIYPPSEPSALVK 256
Query: 246 LSQVIEAEQV-FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ +++ I+ + L+ + K+ + +
Sbjct: 257 QVAINTDKRIAAGKSINPAFFYAALLWENYLHQLEKAKKRNMPFADAQMHAAGKVIDRQR 316
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
KT I K + + I + K+ + + ++
Sbjct: 317 IKT----AIPKFAEQFIRDIWILQPKLAAPRSKQIVQLSEHPRFRAGFDFLL 364
>gi|113461167|ref|YP_719236.1| poly(A) polymerase [Haemophilus somnus 129PT]
gi|112823210|gb|ABI25299.1| poly(A) polymerase [Haemophilus somnus 129PT]
Length = 457
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 16/241 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ ++++ L++ ++ IVGG +RD L+ +D D+AT P++V IF +
Sbjct: 36 MISRNALSVVEKLHRNGYEAYIVGGCLRDLLLGKKPKDFDVATNAKPEQVQAIFQRQ--- 92
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSL 118
+ I+ + ++ T R+ + G + + D+
Sbjct: 93 CRLVGRRFRLAHIMFGRDIIEVATFRAAHSDNHNERQAKQNNAGMLLRDNVYGTIEQDAE 152
Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NA Y + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 153 RRDFTVNAFYYNPQNNTLRDYFNGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSIRFMAKL 212
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+D K LK + R++ E KLL+A + + G+F ++F
Sbjct: 213 DMF-LDKPSQEPIKKMAHLLKNIPPARLFDESVKLLQAGYGIKTYQLLREYGLFDQLFPT 271
Query: 238 V 238
+
Sbjct: 272 L 272
>gi|282901989|ref|ZP_06309887.1| Phosphoesterase, RecJ-like protein [Cylindrospermopsis raciborskii
CS-505]
gi|281193076|gb|EFA68075.1| Phosphoesterase, RecJ-like protein [Cylindrospermopsis raciborskii
CS-505]
Length = 912
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 73/434 (16%), Positives = 135/434 (31%), Gaps = 59/434 (13%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSV------QDIDIATTI------------LPDRVMR 61
+VGGAVRD L+ DID+ L + +
Sbjct: 477 QAAQARGWHLYLVGGAVRDLLLENDPSNQLMLHDIDLVVDGFHQSADVGAGVELARELQQ 536
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKA 115
I+ +R ++ T ++ K + DI T R++ V +
Sbjct: 537 IYQNSRL---EIHGAFQTAALLWHKDPELDCLWVDIATARTEFYPYPAANPEVEASSIRQ 593
Query: 116 DSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171
D RRDFTINA+ G+++D+ GGL DLR+R I+ + + +ED RI R
Sbjct: 594 DLYRRDFTINAMALRLTSPHGGELLDFFGGLIDLRSRKIRVLHP--NSFIEDPTRIYRGV 651
Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS----------EINKLLEAKNPLNA 221
RF +G G+ + + E+ +L+A +A
Sbjct: 652 RFAIRFGFAIEQRTAEYIHYAINSGVYDRTVQENIKTPALHTRLKAELKLILQAPYWQSA 711
Query: 222 IVHM------YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW----KIDSLLRFIVLIS 271
+ + + + + + ++ ++ L+R +LIS
Sbjct: 712 LKLLDQLGALQCIHYTCNLNYGILRELVLLEKLLKIQDRFWQPVQQLPPTWLIRLEILIS 771
Query: 272 WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
+ + +A+ L L + + +
Sbjct: 772 SLEPEYRSKVAENLQLSETSVNRLKKLEAAQVEINRELATCELASVIFNLLQKYDSGTLM 831
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
+A+ ++ L GDD+ K G PG IL H
Sbjct: 832 LMAV------KSSREIRRKIWYYWRDLVHVQPLLKGDDLKKMGYKPGPIFKQILDHLLIA 885
Query: 392 WINSSFQLSQEDLH 405
++ + + +
Sbjct: 886 TLDGKIKTRTQAIE 899
>gi|328952892|ref|YP_004370226.1| poly(A) polymerase [Desulfobacca acetoxidans DSM 11109]
gi|328453216|gb|AEB09045.1| poly(A) polymerase [Desulfobacca acetoxidans DSM 11109]
Length = 417
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 73/351 (20%), Positives = 133/351 (37%), Gaps = 14/351 (3%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
D++ +L L+ + +VGG +RD + +D DIAT P + RIF +R
Sbjct: 24 DVLKVLYRLHHKGHLAYLVGGGIRDLWLGKQPKDFDIATDAHPQEIRRIFRNSRI----I 79
Query: 74 SISYGTIKIIC-RKKYFDITTLRSDLITD---GRYAKVVFTRDWKADSLRRDFTINALYA 129
+ +++ K +++T RS D A D+ RRD TINAL+
Sbjct: 80 GKRFRLVQVFFKGGKIVEVSTFRSRSEFDAEVDMLAPNNTFGSPVEDAQRRDLTINALFY 139
Query: 130 DQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ ++DYVGG+ DL++ I+ +G R D +R+LR R + G + ID
Sbjct: 140 NIADFSILDYVGGVKDLQDGIIRVVGPPEIRFQRDPVRMLRVLRHASRTGFQ-IDPTAWS 198
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQLS 247
A + +++ S R+ E+ K + + M G+ IF ++E S
Sbjct: 199 AIQSYRHLIRLCSPARVRDELLKDFRSGYCRDFFQLMLASGLLAAIFPHIEETTDGAAFS 258
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+ Q ID L + +S + L + +
Sbjct: 259 GLQPRMQAVFGTIDLLTMGGLSLSEAFFWTAF---LIPFLEKVTVLPFQQIEPETVAKYV 315
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ D+V++ + + +H + + + + L W
Sbjct: 316 DESLSPLEFARGRRDEVIMRLVTVSQLMHQLGAGRRVSARLKRRLCLPEAW 366
>gi|148825656|ref|YP_001290409.1| poly polymerase [Haemophilus influenzae PittEE]
gi|148715816|gb|ABQ98026.1| probable poly polymerase [Haemophilus influenzae PittEE]
Length = 514
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 86/422 (20%), Positives = 159/422 (37%), Gaps = 43/422 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 94 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 150
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D++R
Sbjct: 151 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 210
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 211 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 270
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + G+F+++F +
Sbjct: 271 MF-LEKPSEQPISELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 329
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 330 SPY-------------FTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPL 376
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 377 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGS 436
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQL--SQEDLHHLLR 409
+ + P F G D++ G G + + W F +E L H +
Sbjct: 437 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQFSNGEQREQLIHEQQ 491
Query: 410 KL 411
+L
Sbjct: 492 RL 493
>gi|218885462|ref|YP_002434783.1| CBS domain containing protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756416|gb|ACL07315.1| CBS domain containing protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1077
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 81/480 (16%), Positives = 154/480 (32%), Gaps = 89/480 (18%)
Query: 17 NILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIAT-------------------- 52
+L L + D+ VGG VRD L+ D+D+
Sbjct: 498 RLLELAGRLGDRLDVPVYAVGGFVRDILLGRPNLDLDVVVEGDGIAFARALADELGGRMR 557
Query: 53 -----------------------TILPDRVMRIFSKTRYKVIP-TSISYGTIK------- 81
PD V+P IS T
Sbjct: 558 AHYKFKTAVVIFPAWESEKARGGNGRPDAAPDAAQDVTLNVLPGIGISGTTATPPPLPVA 617
Query: 82 ---------------IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
++ D+ T R + V K D RRDFTINA
Sbjct: 618 GDASNEATAEAAHRAAARPEQRIDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTINA 677
Query: 127 LYAD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
G+++D+ G D++++ I+ + +ED RILR RF Y +
Sbjct: 678 QAVQLNGAHFGRLVDFFGAQRDMKDKVIRVLH--SLSFVEDPTRILRAIRFEKRYDFRIG 735
Query: 183 DSDGLVASIKAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----- 236
+ + + LS R++ E+ + + K PL I M + I + I
Sbjct: 736 AQCERLIKNALQLGMMDRLSGARLFHELKLIFDEKAPLPCIRRMEDYDILRLIHPLLKLN 795
Query: 237 DVQEISLDQLSQVIEAEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
+ L +L +V+ ++ +L + L + ++ + + R++R
Sbjct: 796 PTKMDVLTELERVLHWYRLLYLSPAPEPWVLYLLGLCGNGKYLDVAAVTDRLAFSRKVRQ 855
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353
++ L +++ + G +++ + L+ + + +
Sbjct: 856 DFLTLRENVREVHNLLNLWMQRDGSMSGLNSLLSPIAPEGILYLMARSKTEDAR-KHISY 914
Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH---HLLRK 410
+ + +TG+D++ GIP G G +L ++ + L LLR+
Sbjct: 915 YLTRLRGETPDITGNDLLAMGIPAGPAYGRVLRRVLAAKLDGLARTRAAQLDLAHELLRE 974
>gi|68248614|ref|YP_247726.1| poly polymerase [Haemophilus influenzae 86-028NP]
gi|68056813|gb|AAX87066.1| probable poly polymerase [Haemophilus influenzae 86-028NP]
Length = 452
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 85/422 (20%), Positives = 157/422 (37%), Gaps = 43/422 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 32 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 88
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D+ R
Sbjct: 89 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 148
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + +F+++F +
Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYSLFEQLFPAL 267
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 268 SAY-------------FTEKEDSFAERMIVTALSSTDERVADKLRINPAFLFAAFFWYPL 314
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 315 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGS 374
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQL--SQEDLHHLLR 409
+ + P F G D++ G G + + W F +E L H +
Sbjct: 375 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQFSNGEQREQLIHEQQ 429
Query: 410 KL 411
+L
Sbjct: 430 RL 431
>gi|119944355|ref|YP_942035.1| poly(A) polymerase [Psychromonas ingrahamii 37]
gi|119862959|gb|ABM02436.1| poly(A) polymerase [Psychromonas ingrahamii 37]
Length = 459
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/247 (24%), Positives = 103/247 (41%), Gaps = 19/247 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + + +L L+ ++ +VGG VRD L+ L +D DI T P+ V +F R
Sbjct: 32 DENALKVLYRLHNAGFRALLVGGGVRDLLLGLKPKDFDITTNATPEEVKALFRNCRL--- 88
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYA-------------KVVFTRDWKADSL 118
+ I+ ++ ++ T R D + + D+
Sbjct: 89 -IGRRFRLAHILFGREVIEVATFRGHHDDDNGQDAQKVKQSKAGMLLRDNVYGSLEEDAE 147
Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NALY D + D+ G+ DL+ R + IGD R ED +R++R RF A
Sbjct: 148 RRDFTVNALYYDIADFAIYDFCNGMKDLQERRLTLIGDPEVRYREDPVRMIRAIRFSAKL 207
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
I + + L+ + + R + E+ KLL + L + + + +F
Sbjct: 208 D-LTISEECAEPIRRLAPLLQDIPAARHFDEVIKLLLSGQGLVTYRLLKEYKLLQVLFPI 266
Query: 238 VQEISLD 244
+ + D
Sbjct: 267 LFKDGED 273
>gi|224371653|ref|YP_002605817.1| tRNA nucleotidyltransferase/poly(A) polymerase [Desulfobacterium
autotrophicum HRM2]
gi|223694370|gb|ACN17653.1| tRNA nucleotidyltransferase/poly(A) polymerase [Desulfobacterium
autotrophicum HRM2]
Length = 435
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 79/439 (17%), Positives = 151/439 (34%), Gaps = 62/439 (14%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ IL+LL + + ++ I GGAVRD + L D DI T + + + F R K+
Sbjct: 9 VHKILTLLLENQCRAFIAGGAVRDMVAGLPPADFDIVTDASLETIKQTFKNQRVKI--VG 66
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QG 133
S+ + ++ + R D AD +RDFTIN++ D
Sbjct: 67 KSFHVCLV----NGIEVASFRGDRTKFP-----------LADLEQRDFTINSMAWDPVTR 111
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
++ D G DL+ + I+F G+ RI ED LR++R RF + G
Sbjct: 112 QIFDPFSGEQDLKRKIIQFTGNGPLRIREDPLRMVRACRFVSQIGGTLAPETLGDIKTHG 171
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------------ 241
+ ++ ERI EI K + P + G+ +IF + +
Sbjct: 172 RLVGANVAKERIRMEILKAMAHDRPSLFFRSLQATGLLIQIFPCLDRLVDLDGGPFHGET 231
Query: 242 ----------------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
L +L+ + F+ + + I +
Sbjct: 232 VFEHSMMVGDALSPKRPLLRLAGFLHDAGKFDTAAIKEGNLTFHGHEKARDKIEADLVNL 291
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM----IAKLKIFLALHYNNLT 341
R +++S + + T L + +++ +A +NL
Sbjct: 292 KFSTRERRYILSIIDVHMRPLTEKTTPRAVRRILALLESHGVSYQEFMRMRIADKRSNLA 351
Query: 342 HQ------DTCFILQVLSD-----IIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCK 389
Q + + ++ I + + G+ ++ + PG +VG I+
Sbjct: 352 KQPYTLGEIRNRVQKFKNELAPRGIQAFTPADLAIDGNRIMALLNLDPGPEVGRIMGVLF 411
Query: 390 QEWINSSFQLSQEDLHHLL 408
+ ++ + L L+
Sbjct: 412 ERVLDDPNLNTPSALEALV 430
>gi|218710491|ref|YP_002418112.1| poly(A) polymerase [Vibrio splendidus LGP32]
gi|218323510|emb|CAV19687.1| Poly(A) polymerase [Vibrio splendidus LGP32]
Length = 472
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 76/355 (21%), Positives = 138/355 (38%), Gaps = 22/355 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LN + +VGG VRD L+ +D DIAT P+++ +F R
Sbjct: 56 SDNALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKHLFRNCRL--- 112
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----------GRYAKVVFTRDWKADSLRRD 121
+ I+ + ++ T R G + + D+ RRD
Sbjct: 113 -IGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSDEGMLLRDNVYGNVDEDAERRD 171
Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+Y + + DY GG+ DL ++ I+ IGD R ED +R+LR RF A
Sbjct: 172 FTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMRFAAKLDF- 230
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+ D + LK + + R++ E KLL++ + L M +F+++F V E
Sbjct: 231 DIEEDTADPIEELAHLLKDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQMFPSVAE 290
Query: 241 ISLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSL---PREIRYFLI 296
+ EQ+ + +DS LR +M + + +
Sbjct: 291 HFTEGYDS--HTEQMLDLVLDSTDLRIEDGKRVNPAFMFAAMLWYPMNKLADKLVAEQGM 348
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ ++ + + K + + L L + ++++
Sbjct: 349 AHYDAIMEASNIILDRQVKSIAIPRRHTATIREVWQLQLRLPRRNGKRAVRLMEL 403
>gi|114319723|ref|YP_741406.1| poly(A) polymerase [Alkalilimnicola ehrlichii MLHE-1]
gi|114226117|gb|ABI55916.1| poly(A) polymerase [Alkalilimnicola ehrlichii MLHE-1]
Length = 479
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 62/260 (23%), Positives = 99/260 (38%), Gaps = 36/260 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L + +VGG VRD + +D D+AT P+ V +F R
Sbjct: 53 SENALKVLYRLKNAGYGAYLVGGGVRDLSLGHEPKDFDVATDARPEEVRELFRNCRL--- 109
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------------------------------D 101
+ + ++ ++ T R+ +
Sbjct: 110 -IGRRFRLAHVQFGREIIEVATFRALHDPESQDDDEADGDFDDDDVEVRDRAVGEVAFEN 168
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
GR + + D+LRRDFTINALY + V+D+ GGL DL I+ +GD R
Sbjct: 169 GRIVRDNVYGTLEEDALRRDFTINALYYNIADFSVVDHAGGLKDLDQGVIRLMGDPETRY 228
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR RF A G I D + L + R++ E+ KL
Sbjct: 229 REDPVRMLRAVRFAAKLGF-RIHPDTAEPLPRMAHLLAEVPPARLFDEVLKLFMGGLAAE 287
Query: 221 AIVHMYNGGIFKEIFLDVQE 240
+ G+F +F +
Sbjct: 288 TFEMLRQHGLFAPLFPMTER 307
>gi|326561273|gb|EGE11632.1| poly(A) polymerase [Moraxella catarrhalis 46P47B1]
Length = 594
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 68/348 (19%), Positives = 126/348 (36%), Gaps = 11/348 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ ++ L K + IVGG VRDSL+ L+ +D D T P + IF +
Sbjct: 35 IVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIF---GGRCRIIG 91
Query: 75 ISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + ++ ++ T R + DG + D + D RRDF+INALY
Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNVWGDIEQDFARRDFSINALY 151
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+G+V+D+ G L D+ + T++ +GDA RI ED +R+LR RF A G +
Sbjct: 152 YQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLGFEFDQDLAN 211
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
L+ +S+ R++ E K+ + ++ G + + L
Sbjct: 212 QFHQDNWTLLEQVSAHRLYDETQKMFGGGYLTPLLPLLFEHGAMSSL-MSFAPNEPTPLM 270
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
V+ D + + ++ L K+ +
Sbjct: 271 MVVAQNTDRRIAADKSVNPAFFYAAMLWENYLYQLAKYKKRGLPFHEAQIKAAEKTIDAQ 330
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
I K + + + + K+ + + +
Sbjct: 331 RIKTAIPKFAEQFITDIWLLQPKLVNPRVRDIANLERLPKFRAAFDFL 378
>gi|315634141|ref|ZP_07889430.1| poly(A) polymerase [Aggregatibacter segnis ATCC 33393]
gi|315477391|gb|EFU68134.1| poly(A) polymerase [Aggregatibacter segnis ATCC 33393]
Length = 485
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 16/241 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + ++ L + ++ +VGG +RD L+ +D D+AT P+++ +F +
Sbjct: 64 MFNRNALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAVFQRQ--- 120
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSL 118
+ ++ ++ ++ T R+ G + + D+
Sbjct: 121 CRLVGRRFRLAHVMFGREIIEVATFRAGHAEHHNEKLAKQSEEGMLLRDNVYGTLEQDAE 180
Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDF++NALY + Q + DY G+ DL+N ++ IGD R ED +R+LR RF A
Sbjct: 181 RRDFSVNALYYNPQDNTLKDYFNGIEDLKNGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL 240
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+D LK + R++ E KLL++ + + + G+F+++F
Sbjct: 241 EMF-LDKPSEAPIKSLAHLLKNIPPARLFEESLKLLQSGHGVKTYQLLRQYGLFEQLFPL 299
Query: 238 V 238
+
Sbjct: 300 L 300
>gi|296114047|ref|YP_003627985.1| poly(A) polymerase [Moraxella catarrhalis RH4]
gi|295921741|gb|ADG62092.1| poly(A) polymerase [Moraxella catarrhalis RH4]
Length = 594
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 68/348 (19%), Positives = 127/348 (36%), Gaps = 11/348 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ ++ L K + IVGG VRDSL+ L+ +D D T P + IF +
Sbjct: 35 IVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIF---GGRCRIIG 91
Query: 75 ISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + ++ ++ T R + DG + D + D RRDF+INALY
Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNVWGDIEQDFARRDFSINALY 151
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+G+V+D+ G L D+ + T++ +GDA RI ED +R+LR RF A G +
Sbjct: 152 YQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLGFEFDQDLAN 211
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
L+ +S+ R++ E K+ + ++ G + + L
Sbjct: 212 QFHQDNWTLLEQVSAHRLYDETQKMFGGGYLTPLLPLLFEHGAMSSL-MSFAPNEPTPLM 270
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
V+ D + + + ++ L K+ +
Sbjct: 271 MVVARNTDRRIAADKSVNPVFFYAAMLWENYLYQLAKYKKRGLPFHEAQIKAAEKTIDAQ 330
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
I K + + + + K+ + + +
Sbjct: 331 RIKTAIPKFAEQFITDIWLLQPKLVNPRVRDIANLERLPKFRAAFDFL 378
>gi|328950753|ref|YP_004368088.1| Polynucleotide adenylyltransferase region [Marinithermus
hydrothermalis DSM 14884]
gi|328451077|gb|AEB11978.1| Polynucleotide adenylyltransferase region [Marinithermus
hydrothermalis DSM 14884]
Length = 825
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 72/411 (17%), Positives = 143/411 (34%), Gaps = 42/411 (10%)
Query: 13 SDLINILSLLNK----GEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTR 67
+ +L +L + + + +VGGAVRD+++ +V D+D+ V R +
Sbjct: 440 EGIRRVLEVLKERFAPQDGRIYLVGGAVRDAVLGEAVGDVDLVLEGLSAAEVARALVEAL 499
Query: 68 YKVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
++GT + D+ R + VV + D RRDFT+NA
Sbjct: 500 GGSYGLHYAFGTAHVRLASGVEVDLAEAREEHYPYPGALPVVRPSTIQRDLARRDFTVNA 559
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAH-HRILEDYLRILRFFRFFAHYG-EKNIDS 184
+ + + + L + + + +ED RI+R R A G +
Sbjct: 560 MALRVHPEPLVLLDPYGGLEDLEERRLRPLSAVSFVEDPSRIVRGLRLAARLGLTFAPQA 619
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI-FKEIFLDVQEISL 243
+ + + K ++ S R+ E+ L +PL + M++ + + L +
Sbjct: 620 EAQLEAALTPKVIRQASKSRLRGELLLALAEPSPLRVLEQMHSKRVLERLYGLRLTPPVR 679
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
L ++ + ++ L + + + F P + L
Sbjct: 680 QALERLEALRPAEAPEPEAYLY----LLLYGARDPEGFVRTFGFPGRLLEGLAVLREPPE 735
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
+ + + A ++ F AL+ + +P
Sbjct: 736 DPEAVRKFGG-------------ALVQAFCALYPDRAAW---------------LARPRR 767
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
L G DV+ G+ PG +VG +L + + +E+L L RKL+
Sbjct: 768 TLRGRDVLALGLAPGPQVGEVLRRVAEARARGEVRGFEEEL-ALARKLVED 817
>gi|300703163|ref|YP_003744765.1| poly(a) polymerase i [Ralstonia solanacearum CFBP2957]
gi|299070826|emb|CBJ42123.1| poly(A) polymerase I [Ralstonia solanacearum CFBP2957]
Length = 519
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 60/263 (22%), Positives = 110/263 (41%), Gaps = 36/263 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++R
Sbjct: 63 PKLLSRNAVKVTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQVLFRRSR 122
Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLR--------------------------SD 97
+ + + + +++T R
Sbjct: 123 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHA 178
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFT+NA+Y + V DY G+ D+R R ++ IGD
Sbjct: 179 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHRGMEDMRARLLRMIGDP 238
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
H R ED +R+LR RF A G I+ + + + + R++ E+ KLL +
Sbjct: 239 HTRYREDPVRMLRAVRFAAKTGF-GIEPATRAPIAELGPLIHNVPAARLFDEMLKLLMSG 297
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ 239
+ ++ + G+ + + +
Sbjct: 298 HAWASLQELRKAGLHRGLLPLLD 320
>gi|326572182|gb|EGE22178.1| poly(A) polymerase [Moraxella catarrhalis BC7]
Length = 594
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 68/348 (19%), Positives = 126/348 (36%), Gaps = 11/348 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ ++ L K + IVGG VRDSL+ L+ +D D T P + IF +
Sbjct: 35 IVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIF---GGRCRIIG 91
Query: 75 ISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + ++ ++ T R + DG + D + D RRDF+INALY
Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNVWGDIEQDFARRDFSINALY 151
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+G+V+D+ G L D+ + T++ +GDA RI ED +R+LR RF A G +
Sbjct: 152 YQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLGFEFDQDLAN 211
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
L+ +S+ R++ E K+ + ++ G + + L
Sbjct: 212 QFHQDNWTLLEQVSAHRLYDETQKMFGGGYLTPLLPLLFEHGAMSSL-MSFAPNEPTPLM 270
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
V+ D + + ++ L K+ +
Sbjct: 271 MVVARNTDRRIAADKSVNPAFFYAAMLWENYLYQLAKYKKRGLPFHEAQIKAAEKTIDAQ 330
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
I K + + + + K+ + + +
Sbjct: 331 RIKTAIPKFAEQFITDIWLLQPKLVNPRVRDIANLERLPKFRAAFDFL 378
>gi|54310261|ref|YP_131281.1| putative polyA polymerase [Photobacterium profundum SS9]
gi|46914702|emb|CAG21479.1| putative polyA polymerase [Photobacterium profundum SS9]
Length = 449
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 66/255 (25%), Positives = 107/255 (41%), Gaps = 30/255 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNKG + +VGG VRD L++ +D DIAT P+ + +F R
Sbjct: 17 SENALKVLYRLNKGGYDAYLVGGGVRDLLLHKQPKDFDIATNATPEEIKSLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK----------------- 114
+ I+ + ++ T R ++ D K
Sbjct: 74 -IGRRFRLAHILFGRDVIEVATFRGHHSDVPAKVEIKDKADEKGKQQVSSKSQEGMLLRD 132
Query: 115 -------ADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166
D+ RRDFTINA+Y + V DY G+ DL NR ++ +GD R ED +R
Sbjct: 133 NVYGTIDEDAERRDFTINAMYYSAKDFTVTDYANGVEDLNNRIVRLMGDPETRYREDPVR 192
Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226
+LR RF A I+ + L+ + S R++ E KLL+A L +
Sbjct: 193 MLRAVRFAAKLDM-TIEEKTAAPIEELAPLLRDIPSARLFEESLKLLQAGQGLATYKLLR 251
Query: 227 NGGIFKEIFLDVQEI 241
+F+++F + +
Sbjct: 252 QYNLFQQLFPILADH 266
>gi|329123092|ref|ZP_08251662.1| polyA polymerase family protein [Haemophilus aegyptius ATCC 11116]
gi|327471647|gb|EGF17089.1| polyA polymerase family protein [Haemophilus aegyptius ATCC 11116]
Length = 480
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 83/419 (19%), Positives = 155/419 (36%), Gaps = 42/419 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 60 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 116
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D+ R
Sbjct: 117 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 176
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 177 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 236
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + G+F+++F +
Sbjct: 237 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGRGVKTYRLLRQYGLFEQLFPAL 295
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 296 S-------------SYFTEKEDSFAERMIVTALSSTDERVADKLRINPAFLFAAFFWYPL 342
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 343 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGS 402
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + P F G D++ G G + + W E L+++
Sbjct: 403 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQLSNG-EQREQLIQE 455
>gi|301168656|emb|CBW28247.1| poly(A) polymerase I [Haemophilus influenzae 10810]
Length = 452
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 86/422 (20%), Positives = 158/422 (37%), Gaps = 43/422 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 32 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 88
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D+ R
Sbjct: 89 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 148
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + G+F+++F +
Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 268 S-------------SYFTEKEDSFAERMIVTALSSTDERVADKLRINPAFLFAAFFWYPL 314
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 315 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGS 374
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQL--SQEDLHHLLR 409
+ + P F G D++ G G + + W F +E L H +
Sbjct: 375 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQFSNGEQREQLIHEQQ 429
Query: 410 KL 411
+L
Sbjct: 430 RL 431
>gi|255017969|ref|ZP_05290095.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL F2-515]
Length = 152
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 6/136 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQS----TYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I++GT+ + +++++TT R++ R ++V F R + D RRDFT+NA+ D+
Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEH 123
Query: 133 GKVIDYVGGLNDLRNR 148
+ D G ++ +
Sbjct: 124 FALHDPFSGQEAIKKQ 139
>gi|257456641|ref|ZP_05621835.1| polyA polymerase family protein [Treponema vincentii ATCC 35580]
gi|257445965|gb|EEV21014.1| polyA polymerase family protein [Treponema vincentii ATCC 35580]
Length = 395
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 10/226 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
DS+ I I+S L ++ IVGGAVRD L+ + +D DIAT+ P R+ +IF +R
Sbjct: 33 DSEAIRIISGLYNAGYEAYIVGGAVRDLLIGKTPKDFDIATSAEPARIRKIFKNSRL--- 89
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+ + + K ++++T RS + D RRDFT+NALY D
Sbjct: 90 -IGKRFRLVHVFYGPKIYEVSTFRSLEEG----SVGNNFGTIDEDVRRRDFTLNALYYDP 144
Query: 132 QGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+I DYVGG+ D+R + + I D H +ED +R++R ++ I
Sbjct: 145 IKNIIVDYVGGVEDIRKKRLNPIIDLSHIFVEDPVRMIRAIKYATITD-AAIPLLLRYRI 203
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ ++ +S R+ EI K+L + + + + +F +
Sbjct: 204 HRDAPLIEYVSPSRLTEEIGKILMSGHAAEIFKMLLHYRLFLYLQP 249
>gi|163847575|ref|YP_001635619.1| polynucleotide adenylyltransferase region [Chloroflexus aurantiacus
J-10-fl]
gi|222525428|ref|YP_002569899.1| polynucleotide adenylyltransferase region [Chloroflexus sp.
Y-400-fl]
gi|163668864|gb|ABY35230.1| Polynucleotide adenylyltransferase region [Chloroflexus aurantiacus
J-10-fl]
gi|222449307|gb|ACM53573.1| Polynucleotide adenylyltransferase region [Chloroflexus sp.
Y-400-fl]
Length = 420
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 76/404 (18%), Positives = 151/404 (37%), Gaps = 24/404 (5%)
Query: 26 EDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKII 83
+VGG VRD + L + +DID+A ++++ + I ++GT I
Sbjct: 27 GATLWLVGGVVRDLWLELPIGRDIDLAVEGDINQLIVPLADAWDGTITARHPAFGTATIT 86
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ--------QGKV 135
D+ R++ V D RRDF+INA+ +
Sbjct: 87 VGHWVIDLAQTRTERYPKPAILPEVQPAPLTKDLYRRDFSINAMAVQIIADGDQLLSAPL 146
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
ID +GG+ DL R ++ + D R +D R+LR R A + + +
Sbjct: 147 IDPLGGVADLTARRLRLLHDQSLR--DDPTRLLRGVRLAARLQLTPDAATAAQIADALEA 204
Query: 196 GL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--EISLDQLSQVIE- 251
G +LS ERI +E+ LE +P I G+ + + ++LS+ +
Sbjct: 205 GYLALLSPERIQTELCLTLEEPDPAAVIALADQWGLTPHVIPGLHWTPALAERLSRYRQD 264
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
++ D L+ +++ ++ + ++ LP R + + T++
Sbjct: 265 TSEISRLAPDGLVIAGLVLYDLSDDALTQVLHRYHLPAPARNLIQDLIALRPHIATIAAA 324
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
IA + + ++ + ++ + W+ PL GDD+
Sbjct: 325 TSPSAIDTLLQPYSIAAIAVLHYATETSIQQVVSRYLHE-------WRPLRPPLNGDDLR 377
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
G+P G ++G +L + ++ + +R+ + S
Sbjct: 378 HLGVPTGPQIGQLLRRLRAATLDGLI-TDRTTAEQWVRRHLVDS 420
>gi|33151792|ref|NP_873145.1| polyA polymerase [Haemophilus ducreyi 35000HP]
gi|33148013|gb|AAP95534.1| polyA polymerase [Haemophilus ducreyi 35000HP]
Length = 523
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 77/377 (20%), Positives = 152/377 (40%), Gaps = 20/377 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + I+ L+K ++ +VGG +RD L+ +D+DIAT P+ + +IF +
Sbjct: 101 KNALAIVEKLDKAGYEAYLVGGCIRDLLLGHKAKDVDIATNAKPEEIQKIFGRQ---CRL 157
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK-----------ADSLRRD 121
+ I+ ++ +++ T R+D + D+ RRD
Sbjct: 158 IGRRFRLAHIVFGREIYEVATFRADHSITASDKISKISDQGMLLRDNVYGSLSDDAERRD 217
Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D + ++I D+ G+NDL++ ++ IG+ R ED +R+LR RF A
Sbjct: 218 FTVNALYYDPKRQLIFDFFDGINDLKHAKLRLIGNPVTRYQEDPVRMLRAVRFMAKLDMF 277
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D + LK + + R++ E KLL++ M G+F+++F +
Sbjct: 278 -LDKPSDAPIYELASLLKNIPAARLFDESLKLLQSGQGFKTYQLMRQYGLFEQLFPVLTP 336
Query: 241 ISLDQL-SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF-LISF 298
Q SQV D +R + ++ + L ++ ++
Sbjct: 337 FFTAQNDSQVERMLNKALTATDERIRDRLHVNPAFLFAALLWYPLREKMDVLKNEGGLNN 396
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
++ + E K L+ + + L + T + L+ + +
Sbjct: 397 YDAMMLAANDILAESCKAIALHRRHTAVIREIWALQFQFVKRTGKRPLQTLEHVKFRAAF 456
Query: 359 KKPLF--PLTGDDVVKY 373
+ + G D+V+
Sbjct: 457 DLLVMRAEIEGGDLVEL 473
>gi|332528518|ref|ZP_08404506.1| poly(A) polymerase [Hylemonella gracilis ATCC 19624]
gi|332042029|gb|EGI78367.1| poly(A) polymerase [Hylemonella gracilis ATCC 19624]
Length = 571
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 61/267 (22%), Positives = 113/267 (42%), Gaps = 41/267 (15%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D ++++ L ++ IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 59 LVDKRALDVVRTLQDAGHEAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKALFRRAFI- 117
Query: 70 VIPTSISYGTIKIICRK--------KYFDITTLR-------------------------- 95
+ + ++ + + +++T R
Sbjct: 118 ---IGRRFRIVHVVYGRGRQDKGLSEVIEVSTFRAYLDNAAAEQVKGNERTSKSELAGMK 174
Query: 96 SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIG 154
+ + GR + D+ RRDFTINA+Y D + ++ +DY GG D + R ++ IG
Sbjct: 175 HAVDSSGRVLRDNVWGPQDEDATRRDFTINAMYYDPETEIVVDYHGGFKDAKKRVLRMIG 234
Query: 155 DAHHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKL 212
D R ED +RI+R RF A +++ + L + R++ E+ KL
Sbjct: 235 DPAARYREDPVRIIRAVRFAAKLSGLGFKLEAGTGRPLKDMRSLLADVPQSRLFDEMLKL 294
Query: 213 LEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
L+ + L + + G+ + I+ +
Sbjct: 295 LQTGHALATVAQLEKLGLARGIYPLLD 321
>gi|73542462|ref|YP_296982.1| Poly(A) polymerase, PcnB [Ralstonia eutropha JMP134]
gi|72119875|gb|AAZ62138.1| Poly(A) polymerase, PcnB [Ralstonia eutropha JMP134]
Length = 509
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 64/263 (24%), Positives = 110/263 (41%), Gaps = 36/263 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ + + S L + ++ IVGGAVRD L+ + +D D+AT P++V +F ++R
Sbjct: 38 PTLLSRNAVKVTSTLQQAGYQAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQSLFRRSR 97
Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLR--------------------------SD 97
+ + + + +++T R
Sbjct: 98 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVASETLPEGRRLKRSELDSKTHA 153
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFTINA+Y D + DY G+ D+R RT++ IGD
Sbjct: 154 IDASGRVLRDNVWGSQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDP 213
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R ED +R+LR RF A G ID + + S R++ E+ KLL +
Sbjct: 214 TLRYREDPIRMLRVVRFAAKTGF-GIDEATREPIGGLASLIHNVPSARLFDEMLKLLMSG 272
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ 239
+ ++ + G+ K + +
Sbjct: 273 HAWASLQELRKAGLHKGLLPLLD 295
>gi|270156669|ref|ZP_06185326.1| poly(A) polymerase [Legionella longbeachae D-4968]
gi|269988694|gb|EEZ94948.1| poly(A) polymerase [Legionella longbeachae D-4968]
Length = 402
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 71/341 (20%), Positives = 137/341 (40%), Gaps = 15/341 (4%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
L+ L ++ IVGG+VRD L++ + +D D+AT P++V +F R +
Sbjct: 2 LNRLIGAGFQAYIVGGSVRDLLLHKAPKDFDVATNATPNQVKSLFRNGRI----IGRRFK 57
Query: 79 TIKIICRKKYFDITTLRSD--------LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ I+ ++ ++ T RS G + D+ RRDFTIN+LY +
Sbjct: 58 LVHILFHREIIEVATFRSHVALDENQVTNERGMLVRDNAYGSLDEDAWRRDFTINSLYYN 117
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ID+ GG+ D+ R I+ IGD R ED +R+LR RF A + ++
Sbjct: 118 INDSSIIDFTGGVKDVEKRLIRMIGDPIKRYQEDPVRMLRAIRFSAKLNF-KLAAETAAP 176
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ + +S+ R++ E+ KL + N + G+F +F Q++ +
Sbjct: 177 FPEISHLITHVSNSRLFDEMTKLYQCGNAETVQKLLIQYGLFGHLFPQTQKLLGGAYP-I 235
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ D+ +R ++ ++ ++++ I +
Sbjct: 236 NALLAIALENTDTRIREDKPVTPAFLFAVFLWFPMVEHSKQLQSTGIDPLPSIEQAMSFV 295
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
I E ++ + I + L ++ +LQ
Sbjct: 296 ISEQNRIISIPKRYSQIIREIWLLQYRFSKRLGGRAFNLLQ 336
>gi|113869035|ref|YP_727524.1| Poly(A) polymerase [Ralstonia eutropha H16]
gi|113527811|emb|CAJ94156.1| Poly(A) polymerase [Ralstonia eutropha H16]
Length = 513
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 36/261 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + S L + ++ IVGGAVRD L+ + +D D+AT PD+V +F ++R
Sbjct: 40 LLSRNAVKVTSTLQQAGYQAYIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSRI- 98
Query: 70 VIPTSISYGTIKIICRK----KYFDITTLR--------------------------SDLI 99
+ + + + +++T R +
Sbjct: 99 ---IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAIASETLPEGRRLKRAELDSKTHAID 155
Query: 100 TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHH 158
GR + D+ RRDFTINA+Y D + DY G+ D+R RT++ IGD
Sbjct: 156 ASGRVLRDNVWGSQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDPVT 215
Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218
R ED +R+LR RF A +ID + + S R++ E+ KLL + +
Sbjct: 216 RYREDPIRMLRVVRFAAKTSF-DIDEATRHPIAGLASLIHNVPSARLFDEMLKLLMSGHA 274
Query: 219 LNAIVHMYNGGIFKEIFLDVQ 239
++ + G+ + + +
Sbjct: 275 WASLQELRKAGLHQGLLPLLD 295
>gi|294339615|emb|CAZ87974.1| putative Poly(A) polymerase, PcnB [Thiomonas sp. 3As]
Length = 478
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 64/241 (26%), Positives = 106/241 (43%), Gaps = 32/241 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ N + L + ++ IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 41 SQNARNTVQTLQQAGFEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKPLFKRAFI--- 97
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------------------GRYA 105
+ + ++ + +++T R+ GR
Sbjct: 98 -IGRRFRIVHVMYGRDIIEVSTYRALHDAQAAESVDGNERTSRRALADKTLAVDSSGRVL 156
Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164
+ D+ RRDFTINALY D V+DY G+ DL+ R ++ IGD R ED
Sbjct: 157 RDNVWGTLDDDAERRDFTINALYYDPIRDVVVDYHRGMKDLKERRLRMIGDPAARYREDP 216
Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224
+R+LR RF A G +ID L + L + + R++ E KLL+ + + ++
Sbjct: 217 VRMLRIARFAAKLGF-DIDPATLAPIGPSADLLANVPAARLFDETIKLLQTGHAVASLQQ 275
Query: 225 M 225
+
Sbjct: 276 L 276
>gi|241766688|ref|ZP_04764530.1| poly(A) polymerase [Acidovorax delafieldii 2AN]
gi|241362988|gb|EER58669.1| poly(A) polymerase [Acidovorax delafieldii 2AN]
Length = 526
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 62/265 (23%), Positives = 114/265 (43%), Gaps = 37/265 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D +++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 39 PELVDRRAAEVVATLKQAGFEAYIVGGAVRDLLLGLRPKDFDVATNATPEQVKGLFRRAF 98
Query: 68 YKVIPTSISYGTIKIICR----KKYFDITTLR--------------------------SD 97
+ + ++ + +++T R
Sbjct: 99 I----IGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNSAAGQVSGNEKTSKAQLSGMQHA 154
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFT+NA+Y D V+DY GL D + +T++ IGD
Sbjct: 155 VDASGRVLRDNVWGPQDEDATRRDFTVNAMYYDPVSQIVVDYHKGLQDAKKKTLRMIGDP 214
Query: 157 HHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214
R ED +RI+R RF A +D+ +++++ L+ + R++ E+ KLL+
Sbjct: 215 ATRYREDPVRIIRAVRFAAKLSALGFTLDAKTAAPLVQSQQLLQDVPQSRMFDEMLKLLQ 274
Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ + I + G+ I+ +
Sbjct: 275 TGHAIATIAQLRKLGMATGIYPLLD 299
>gi|319896476|ref|YP_004134669.1| poly polymerase [Haemophilus influenzae F3031]
gi|317431978|emb|CBY80326.1| probable poly polymerase [Haemophilus influenzae F3031]
Length = 452
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 83/419 (19%), Positives = 155/419 (36%), Gaps = 42/419 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 32 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 88
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D+ R
Sbjct: 89 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 148
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + G+F+++F +
Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 268 S-------------SYFTEKEDSFAERMIVTALSSTDERVADKLRINPAFLFAAFFWYPL 314
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 315 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGS 374
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + P F G D++ G G + + W E L+++
Sbjct: 375 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQLSNG-EQREQLIQE 427
>gi|257059835|ref|YP_003137723.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8802]
gi|256590001|gb|ACV00888.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8802]
Length = 420
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 77/411 (18%), Positives = 156/411 (37%), Gaps = 45/411 (10%)
Query: 29 SCIVGGAVRDSLMN--LSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
+C+VGGAVRD+L+N + D+D + +I + + + +++ +
Sbjct: 26 ACLVGGAVRDALLNCSRNYLDLDFVVPHCAVETARKIANNYQAGFVVLDEQRRIARVVFK 85
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLND 144
+ D + + D RRDFTINA+ D Q ++ID + G D
Sbjct: 86 QGTVDFA--------------QQEGENLEKDLRRRDFTINAIAYDVHQQQLIDPLKGSED 131
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
L+ R ++ + + + +D LR+LR +R I+ + +K +++ER
Sbjct: 132 LKKRLLRMVSLNN--LKDDPLRLLRAYRQAIQLNF-TIEEKTRETIRQLAPLIKKVAAER 188
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264
+ +E+ LL ++ M G+ F ++ E L QL +V + ++ ++
Sbjct: 189 VQTELGYLLSDSRGSQGLIDMAKDGLLNPWFKELTEDKLQQLLKVDQVVKLLRDQLAIDD 248
Query: 265 RFIVLISWQDKKS---------------------ILSMAKKFSLPR-EIRYFLISFFNCN 302
+ L D R +IR +
Sbjct: 249 FYQFLNYELDSYQDYSLIIQRAKLASLVLSVPEKAELELVNLKYSRADIRMITKALTYLP 308
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
++ S +++L++ + + + L + LAL L I + L P
Sbjct: 309 LLEENQSKMSLRELYFFFLEVGDVFPLIVILALARGILLTDILPLIYRYLDPKDQVAHPC 368
Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+TG D++K + P ++G +L + +I L++E+ +
Sbjct: 369 PLITGHDLIKQLNLKPSPQIGQLLTEIQIAYIEGKI-LTKEEALAFAETTV 418
>gi|115350706|ref|YP_772545.1| poly(A) polymerase [Burkholderia ambifaria AMMD]
gi|115280694|gb|ABI86211.1| poly(A) polymerase [Burkholderia ambifaria AMMD]
Length = 461
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 67/379 (17%), Positives = 141/379 (37%), Gaps = 37/379 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 12 LISRNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 70
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR---------------------------SDLITDG 102
+ + + ++ +++T R + G
Sbjct: 71 ---IGRRFQIVHVQFGQELIEVSTFRAMVDAPPEAAAAEPPKRLKRDELDRRTHAVDASG 127
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 128 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADIRARLLRMIGDPATRYR 187
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A G I++ + + + R++ E+ KLL + L
Sbjct: 188 EDPVRMLRVVRFAAKLGF-EIETHTREPINALADLINNVPAARLFDEMLKLLLSGQALAC 246
Query: 222 IVHMYNGGIFKEIFLD----VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+ + G+ + +++ ++ + + + L +
Sbjct: 247 LQRLRKEGLHHGLLPLLDVVLEQPQGEKFITLALNNTDARVRAGKTVSPGFLFATLLWHD 306
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ ++++ EI + + I K + ++ +L++
Sbjct: 307 MRQRFEQYTAEGEIPVPALHRAMDDVIDMQTEKLAIHKRYSADMREIWGLQLRLEKRSGR 366
Query: 338 NNLTHQDTCFILQVLSDII 356
+ + + ++
Sbjct: 367 SAMRLLEHQRFRAGYDFLL 385
>gi|229846983|ref|ZP_04467089.1| probable poly polymerase [Haemophilus influenzae 7P49H1]
gi|229810067|gb|EEP45787.1| probable poly polymerase [Haemophilus influenzae 7P49H1]
Length = 452
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 85/422 (20%), Positives = 158/422 (37%), Gaps = 43/422 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 32 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 88
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D++R
Sbjct: 89 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 148
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + +F+++F +
Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYSLFEQLFPAL 267
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 268 S-------------SYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPL 314
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 315 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGS 374
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQL--SQEDLHHLLR 409
+ + P F G D++ G G + + W F +E L H +
Sbjct: 375 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQFSNGEQREQLIHEQQ 429
Query: 410 KL 411
+L
Sbjct: 430 RL 431
>gi|319775006|ref|YP_004137494.1| poly polymerase [Haemophilus influenzae F3047]
gi|317449597|emb|CBY85802.1| probable poly polymerase [Haemophilus influenzae F3047]
Length = 452
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 83/419 (19%), Positives = 155/419 (36%), Gaps = 42/419 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 32 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 88
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D+ R
Sbjct: 89 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 148
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + G+F+++F +
Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGRGVKTYRLLRQYGLFEQLFPAL 267
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 268 S-------------SYFTEKEDSFAERMIVTALSSTDERVADKLRINPAFLFAAFFWYPL 314
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 315 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGS 374
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + P F G D++ G G + + W E L+++
Sbjct: 375 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQLSNG-EQREQLIQE 427
>gi|119504372|ref|ZP_01626452.1| poly(A) polymerase [marine gamma proteobacterium HTCC2080]
gi|119459880|gb|EAW40975.1| poly(A) polymerase [marine gamma proteobacterium HTCC2080]
Length = 417
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 56/256 (21%), Positives = 106/256 (41%), Gaps = 20/256 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I ++ L + IVGGAVRD ++ +D D+AT P+ + +F R
Sbjct: 8 YVSPAAIRVVEKLRAANFEGYIVGGAVRDLILGGKPKDFDVATNATPEEIKGLFRSARI- 66
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA------------KVVFTRDWKADS 117
+ + + ++ ++TT R +++G + D+
Sbjct: 67 ---IGRRFQIVHVRDGREIIEVTTYRGPHVSEGSGKSASKQSDKGLLLRDNVYGTLAEDA 123
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRD TINA+Y + V+D + G D+ R ++ +GD R ED +R+LR RF A
Sbjct: 124 ARRDLTINAMYYNPIDESVLDQMDGHQDINARLVRILGDPQTRYREDPVRMLRVVRFAAK 183
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ +I+S+ A L + R++ E KL A ++ + + +
Sbjct: 184 L-QFDIESETESAISACGPLLAEIPPARLFDEFLKLFMAGYGRPTLLLLLRYQLLDSLCP 242
Query: 237 DVQEI--SLDQLSQVI 250
D + + +++
Sbjct: 243 DAAFLIEKEPRFKKLV 258
>gi|124268204|ref|YP_001022208.1| putative polynucleotide adenylyltransferase protein [Methylibium
petroleiphilum PM1]
gi|124260979|gb|ABM95973.1| putative polynucleotide adenylyltransferase protein [Methylibium
petroleiphilum PM1]
Length = 535
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 36/250 (14%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D + +++ L++ ++ IVGGAVRD ++ L +D D+AT P++V +F +
Sbjct: 46 LVDDRALKVVATLHEAGYEAYIVGGAVRDMMLGLRPKDFDVATNATPEQVKGLFRRAFI- 104
Query: 70 VIPTSISYGTIKIICR----KKYFDITTLR--------------------------SDLI 99
+ + ++ + +++T R +
Sbjct: 105 ---IGRRFRIVHVVYGRGREHEVIEVSTFRAYLDAAAAEQVAGNEKTSKAELSGKSHVVD 161
Query: 100 TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHH 158
GR + D+ RRDFT+NALY D Q ++ +DY GG+ D + R ++ IGD
Sbjct: 162 ASGRVLRDNVWGPQHEDAARRDFTVNALYYDPQTQIVVDYHGGIADAKKRLLRMIGDPVT 221
Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218
R ED +RI+R RF A G I+ L+ + R++ E+ KLL+ +
Sbjct: 222 RYREDPVRIIRVVRFAAKLGF-EIEPKTRAPMRDCAALLEAVPISRLFDEMIKLLQTGHA 280
Query: 219 LNAIVHMYNG 228
L +I +
Sbjct: 281 LASIAQLRKQ 290
>gi|90412020|ref|ZP_01220027.1| putative polyA polymerase [Photobacterium profundum 3TCK]
gi|90326998|gb|EAS43377.1| putative polyA polymerase [Photobacterium profundum 3TCK]
Length = 449
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 80/414 (19%), Positives = 147/414 (35%), Gaps = 56/414 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNKG + +VGG VRD L++ +D DIAT P+ + +F R
Sbjct: 17 SENALKVLYRLNKGGYDAYLVGGGVRDLLLHKQPKDFDIATNATPEEIKSLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK----------------- 114
+ I+ + ++ T R ++ D K
Sbjct: 74 -IGRRFRLAHILFGRDVIEVATFRGHHSDAPVKVEIKDKADAKGKQQISSKSQEGMLLRD 132
Query: 115 -------ADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166
D+ RRDFTINA+Y + V DY G+ DL NR ++ +GD R ED +R
Sbjct: 133 NVYGTIDEDAERRDFTINAMYYSAKDFTVTDYANGVEDLNNRIVRLMGDPETRYREDPVR 192
Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226
+LR RF A I+ + L+ + S R++ E KLL+A L +
Sbjct: 193 MLRAVRFAAKLDM-TIEEKTAAPIEELAPLLRDIPSARLFEESLKLLQAGQGLATYKLLR 251
Query: 227 NGGIFKEIFLDVQEI-----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISW--- 272
+F+++F + + ++ + + + +++ + ++ +
Sbjct: 252 QYNLFQQLFPILADHFTEDHSSQTEQMIEHILAATDKRIAEDKRVNPAFIYAAMLWYPLT 311
Query: 273 -----------QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+A L ++R I + +
Sbjct: 312 TRAEEISFASGLAFYDAFMVAANDILDEQVRSIAIPRRHTTTVRDIWQQQIRFSRRSGKR 371
Query: 322 DKVMIAKLKIFLALH-YNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374
M+ K A +H + I+++ S ++ PL G V +
Sbjct: 372 AFKMMEHPKFRAAYDFMEMRSHFEGDDIVELTSWWNEFQNADRPLRGKMVQEIN 425
>gi|145633375|ref|ZP_01789105.1| polyA polymerase [Haemophilus influenzae 3655]
gi|145635248|ref|ZP_01790952.1| polyA polymerase [Haemophilus influenzae PittAA]
gi|229845401|ref|ZP_04465532.1| probable poly polymerase [Haemophilus influenzae 6P18H1]
gi|144985938|gb|EDJ92540.1| polyA polymerase [Haemophilus influenzae 3655]
gi|145267527|gb|EDK07527.1| polyA polymerase [Haemophilus influenzae PittAA]
gi|229811709|gb|EEP47407.1| probable poly polymerase [Haemophilus influenzae 6P18H1]
Length = 452
Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats.
Identities = 86/422 (20%), Positives = 159/422 (37%), Gaps = 43/422 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 32 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 88
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D++R
Sbjct: 89 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 148
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ + LK + R++ E KLL+A + + G+F+++F +
Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
E + R IV + + + +F
Sbjct: 268 S-------------SYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPL 314
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD--- 354
K + L G++V+ + A + +D F+ LQ+L
Sbjct: 315 REKVEILKNEGGLNNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTRS 374
Query: 355 --IIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQL--SQEDLHHLLR 409
+ + P F G D++ G G + + W F +E L H +
Sbjct: 375 APMRTMEHPKFR-AGFDLLAMRAEIEG---GETI-ELAKWWHEYQFSNGEQREQLIHEQQ 429
Query: 410 KL 411
+L
Sbjct: 430 RL 431
>gi|296135509|ref|YP_003642751.1| poly(A) polymerase [Thiomonas intermedia K12]
gi|295795631|gb|ADG30421.1| poly(A) polymerase [Thiomonas intermedia K12]
Length = 478
Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats.
Identities = 64/241 (26%), Positives = 106/241 (43%), Gaps = 32/241 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ N + L + ++ IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 41 SQNARNTVQTLQQAGFEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKPLFKRAFI--- 97
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------------------GRYA 105
+ + ++ + +++T R+ GR
Sbjct: 98 -IGRRFRIVHVMYGRDIIEVSTYRALHDAQAAESVDGNERTSRRALADKTLAVDSSGRVL 156
Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164
+ D+ RRDFTINALY D V+DY G+ DL+ R ++ IGD R ED
Sbjct: 157 RDNVWGTLDDDAERRDFTINALYYDPIRDVVVDYHRGMKDLKERRLRMIGDPAARYREDP 216
Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224
+R+LR RF A G +ID L + L + + R++ E KLL+ + + ++
Sbjct: 217 VRMLRIARFAAKLGF-DIDPATLAPIGPSADLLANVPAARLFDETIKLLQTGHAVASLQQ 275
Query: 225 M 225
+
Sbjct: 276 L 276
>gi|15602729|ref|NP_245801.1| hypothetical protein PM0864 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721175|gb|AAK02948.1| PcnB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 501
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 83/421 (19%), Positives = 158/421 (37%), Gaps = 44/421 (10%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + I+ L++ ++ IVGG +RD L+ +D D+AT LP+++ IF +
Sbjct: 78 MINRNALGIVEKLHRHGFEAYIVGGCLRDLLLGKHPKDFDVATNALPEQIQTIFQRQ--- 134
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----------WKADSL 118
+ I+ + ++ T R+ + + +++ + D+
Sbjct: 135 CRLVGRRFRLAHIMFGRDVIEVATFRASHNENNHESLAKQSKEGMLLRDNVYGTLEQDAE 194
Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 195 RRDFTVNALYYNPQDNTLRDYFHGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKL 254
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
++ + LK + R++ E KLL+A + + G+F+++F
Sbjct: 255 DMF-LEKPSEQPIRELAPLLKNIPPARLFDECLKLLQAGYGVKTYKLLRQYGLFEQLFPS 313
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+ ++ + E R I+ + + + +F
Sbjct: 314 LMPYFTEKGDSLAE-------------RMILKALTSTDERVADKLRINPAFLFAAFFWYP 360
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-LQVLSD-- 354
K + L +++ A + +D F+ LQ+L
Sbjct: 361 LREKVEMLKNEGGLNNHDAYALASSEILDLFCAALAAPRRHTAVIRDIWFLQLQLLKRSG 420
Query: 355 ---IIHWKKPLFPLTGD-DVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
I + P F D++ G G + W F S E HL++
Sbjct: 421 QQPIRTMEHPKF--RAAFDLLAMRSEVEG---GETI-ELATWWHEYQFSNS-EQRDHLVK 473
Query: 410 K 410
+
Sbjct: 474 E 474
>gi|322417672|ref|YP_004196895.1| poly(A) polymerase [Geobacter sp. M18]
gi|320124059|gb|ADW11619.1| poly(A) polymerase [Geobacter sp. M18]
Length = 471
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 59/274 (21%), Positives = 105/274 (38%), Gaps = 47/274 (17%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + +L L + + +VGG VRD L+ +D D+ T P ++ ++F R
Sbjct: 21 LLSPNGVKVLYKLKEHGFVAYLVGGGVRDLLLGREPKDFDVVTDATPAQLKKLFRNCRL- 79
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-------------------------SDLITDGRY 104
+ + + ++ T R + +GR
Sbjct: 80 ---IGRRFRLAHLHFHDEIIEVATFRSTVDAAEAAAEEAPEAVPEPSEAELLEHEREGRR 136
Query: 105 AKVV----------------FTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147
+ D++RRDFT+NAL+ +ID+VGG+ DL+N
Sbjct: 137 RGHHGPKMLKSEDGMVLRDNVFGTPEEDAIRRDFTVNALFYSIADFSIIDHVGGMEDLKN 196
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
I+ IGD R ED +R++R RF + G NI+ A + + + R++
Sbjct: 197 GLIRTIGDPMVRFTEDPVRMIRAIRFASMLGF-NIEPRTEAAIEELCGTINKATPPRLYE 255
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
E+ KLL + + G+F+ +F
Sbjct: 256 EVLKLLLMGAGERTYQMLRHSGLFEPLFPHFDAW 289
>gi|134294830|ref|YP_001118565.1| poly(A) polymerase [Burkholderia vietnamiensis G4]
gi|134137987|gb|ABO53730.1| poly(A) polymerase [Burkholderia vietnamiensis G4]
Length = 517
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 69/369 (18%), Positives = 134/369 (36%), Gaps = 35/369 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L ++ +D D+AT P V R+F + R
Sbjct: 72 LISKNAVRVTDTLQQAGFRAFIVGGAVRDLLFGIAPKDFDVATDATPTEVQRLFRRARL- 130
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR---------------------------SDLITDG 102
+ + + ++ +++T R + G
Sbjct: 131 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPPEAAPAEPPKRLKRDELDRRTHAVDASG 187
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRIL 161
R + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 188 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADMRARLLRMIGDPATRYR 247
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A G I+ + + + R++ E+ KLL + + L
Sbjct: 248 EDPVRMLRVVRFAAKLGF-EIEPHTREPIKPLADLINNVPAARLFDEMLKLLLSGHALAC 306
Query: 222 IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 307 LKQLREQGLHHGLLPLLDVV--LEQPQGEKFITLALNNTDARVRAGKPVSPGFLFATLLW 364
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
+ + + ++ + L L +
Sbjct: 365 HDMRQRFEQYSADGEFPVPALHRAMDDVLDMQTEKLAIHKRYSADMREIWGLQLRLEKRS 424
Query: 342 HQDTCFILQ 350
+ +L+
Sbjct: 425 GRSAMRLLE 433
>gi|304311633|ref|YP_003811231.1| Poly(A) polymerase [gamma proteobacterium HdN1]
gi|301797366|emb|CBL45586.1| Poly(A) polymerase [gamma proteobacterium HdN1]
Length = 467
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 65/372 (17%), Positives = 130/372 (34%), Gaps = 32/372 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+L L + + +VGG++RD L+ +S +D D+AT P+++ ++F R
Sbjct: 39 SPGARRVLETLTQSGYSAYLVGGSIRDGLLGISPKDFDVATNATPEQIRQLFRSCRL--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYA---------KV 107
+ + ++ ++ T R D R A +
Sbjct: 96 -IGQRFRLAHVRMGREIIEVATFRGHHHPDDDDDESNSEEAGNQKPRRASVSDEGMILRD 154
Query: 108 VFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166
D++RRDFT NAL+ I D+VGG D+++R ++ IGD R ED +R
Sbjct: 155 NVFGTEHEDAMRRDFTANALFYRLSDGAIVDHVGGFADIQSRRLRLIGDPDTRFREDPVR 214
Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226
ILR RF A ID + L + + R++ EI K+ + +
Sbjct: 215 ILRAIRFAAKLDF-AIDETLVKPIRDLGGLLDHVPAARLFEEIQKMFLSGYAAPVWQKLL 273
Query: 227 NGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284
G+ ++F + +S Q+ ++ + + L++ S+ ++
Sbjct: 274 EFGLAPQLFPLLVNLSDADHQMIRIAMQNTDTRIAEEKPVTPAFLLAVLLWPSLKREWER 333
Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344
+ I + F ++ + ++ +
Sbjct: 334 LKEDEDSAAPQFQQAAYRVISAQNHRISIPRRFQQPMREIWDLQQRLPRRQGKRADQVLE 393
Query: 345 TCFILQVLSDII 356
++
Sbjct: 394 HPRFRAAYDFLL 405
>gi|254428702|ref|ZP_05042409.1| poly(A) polymerase subfamily [Alcanivorax sp. DG881]
gi|196194871|gb|EDX89830.1| poly(A) polymerase subfamily [Alcanivorax sp. DG881]
Length = 432
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 60/243 (24%), Positives = 112/243 (46%), Gaps = 19/243 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+++L L+KG ++ +VGG +RD L +D D++T P++V R+F ++R
Sbjct: 15 SRAALDVLYGLHKGGFEAYLVGGCLRDILCGREPKDFDVSTNATPEQVNRLFKRSRI--- 71
Query: 72 PTSISYGTIKIICRKKYFDITTLR-------------SDLITDGRYAKVVFTRDWKADSL 118
+ + + ++ +++T R G + + D+L
Sbjct: 72 -IGRRFQIVHVRFGREVIEVSTFRAKASDDNQDQNKHHAHEETGLVLRDNTWGSIEEDAL 130
Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTINALY + + D+VG + D+ I+ IG+ R ED +R+LR RF A
Sbjct: 131 RRDFTINALYYNIADFTLHDFVGSMGDIDQEVIRLIGNPEQRFREDPVRMLRAARFAAKL 190
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G I+ + L + + R++ E+ KL + + + + G+F+ +F +
Sbjct: 191 GFH-IEESTARRIPDMAELLLQVPAARLFDEVLKLFLSGHARASYEQLQELGLFRFLFPE 249
Query: 238 VQE 240
Q+
Sbjct: 250 TQQ 252
>gi|302342303|ref|YP_003806832.1| poly(A) polymerase [Desulfarculus baarsii DSM 2075]
gi|301638916|gb|ADK84238.1| poly(A) polymerase [Desulfarculus baarsii DSM 2075]
Length = 425
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 61/274 (22%), Positives = 108/274 (39%), Gaps = 9/274 (3%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D D + +L L++ + +VGG VRD L+ +D D+ T P +V +F +R
Sbjct: 33 DPDALKVLYRLHRAGFTAYLVGGGVRDLLLGKKPKDFDVGTDARPGQVRNLFRNSRV--- 89
Query: 72 PTSISYGTIKIIC-RKKYFDITTLRSDLITDGR--YAKVVFTRDWKADSLRRDFTINALY 128
+ +++ R K +++T R D D+LRRD TINA++
Sbjct: 90 -IGRRFRLVQVFFQRNKIVEVSTFRRASDPDEDLVLQANNTFGSPAEDALRRDLTINAMF 148
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ ++DYVGG++DL+ I+ +GD R D +R++R R A G + + S+
Sbjct: 149 YNIADFSIVDYVGGMDDLKAGLIRAVGDPKIRFHRDPVRVMRAVRHAARTGFQ-LTSETR 207
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
A + L + S RI E+ + L + + I + +++ S
Sbjct: 208 QAVEDFRCELAVCPSSRIRDELMRDLAGGAAAPWLELAHQTKILYSLLPGLEKYYGQPDS 267
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281
ID +
Sbjct: 268 HARAQAACNLAAIDQAVAAGAPPDDAVIVCAFLW 301
>gi|289432302|ref|YP_003462175.1| polynucleotide adenylyltransferase region [Dehalococcoides sp. GT]
gi|288946022|gb|ADC73719.1| Polynucleotide adenylyltransferase region [Dehalococcoides sp. GT]
Length = 418
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 72/414 (17%), Positives = 147/414 (35%), Gaps = 22/414 (5%)
Query: 9 WFHD---SDLINIL----SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
+ + ++ ++ L +VGG VRD L+N + +D D+ + +
Sbjct: 9 FLKNRLPPEINRLILHAAELAASQNLHLYLVGGLVRDFLLNKTPKDADLVLAANAIKFGQ 68
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ + + DI+T R++ D V D K D RRD
Sbjct: 69 GLLEGFNYKATLHPRFNNLSADINGFKLDISTARNEFYPDPGKLPEVLEGDIKTDLFRRD 128
Query: 122 FTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
F INA+ G ++D GL DL+ + + +D RI R R+
Sbjct: 129 FKINAMALSLSPQDFGCLVDPYNGLTDLKQHKLSVLHP--KSFRDDPSRIWRALRYSERL 186
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G +I S+ L + + + ++ ++R+ E+ + + P N ++ G+ K
Sbjct: 187 GF-DISSETLTLLQRDAQLIPLIGADRLRYEMECIFKEAKPENILLKAEETGVLKNSLPF 245
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
++ + + EA ++ + + +L DK ++ L + I L
Sbjct: 246 IKADNWPA-DKFAEARNMYGENVSPEIYLCLLSVRLDKPQAEALITGLHLSKYISACLRD 304
Query: 298 FFNCNFNQKTLSIPE-IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ + L + Y K + F + N + + + LS I
Sbjct: 305 YQCLAEHLAELGRVDLSPSRLYGILVKCKKEARQAFNIANDNPIVRKHLMLFQEELSGI- 363
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
L G D++ G PG + +L ++ +++ ++ R+
Sbjct: 364 -----KPCLKGTDLLTLGFAPGPDIKTVLAELLNLKLDGKIPSRTDEIDYVKRR 412
>gi|237755615|ref|ZP_04584229.1| poly A polymerase [Sulfurihydrogenibium yellowstonense SS-5]
gi|237692210|gb|EEP61204.1| poly A polymerase [Sulfurihydrogenibium yellowstonense SS-5]
Length = 601
Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats.
Identities = 73/406 (17%), Positives = 143/406 (35%), Gaps = 18/406 (4%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I L K +S I+GG VRD ++N D+DI +++ + K +
Sbjct: 203 KEIGELSQKLGYRSFIIGGVVRDIILNRPNLDVDIIVEGDAPTLIKEYVKDKNYTFYIYN 262
Query: 76 SYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+ T ++I D +T R + V D RRDFTIN L +
Sbjct: 263 EFMTGQVIIENGLKLDFSTARKEEYQSPGAYPRVEKATLFEDLYRRDFTINTLAIEITSS 322
Query: 135 VIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ + + +ED +RILR RF + K + + +
Sbjct: 323 NYGVLIDYFNAIKDIKEKRIRILHSLSFVEDPIRILRALRFAGRFNFKLEKNTEKLLTYS 382
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+KGL +++ + +L A AI + +K + + + +
Sbjct: 383 VEKGLLLVAPRGRIN--LELSLAFEEEKAIEILKLYDKYKVLN------KIFTQTHIDSK 434
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+++ K+ L + I + + + +F ++ +
Sbjct: 435 KEILLQKLTDNLVLLQHIKPYNYSKTTNFLYVLLSHLPTELIYENLKLYHFGKEAKLCDK 494
Query: 313 IKKLFYLYGDKVMIAKL-----KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
+ F I ++ KI L LT D +++ KKPL + G
Sbjct: 495 FVQDFNEILKLEDIFQIYKILKKINLEYLPAILTLVDEDRYKKIIKIFEVEKKPL--IKG 552
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+D+++ G+ P K NIL ++ + F+ + + ++ K +
Sbjct: 553 EDLIELGLEPSKLFKNILEDVLEKQLKEVFKNKDDIIKYIKSKYLE 598
>gi|160897631|ref|YP_001563213.1| poly(A) polymerase [Delftia acidovorans SPH-1]
gi|160363215|gb|ABX34828.1| poly(A) polymerase [Delftia acidovorans SPH-1]
Length = 529
Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats.
Identities = 60/249 (24%), Positives = 108/249 (43%), Gaps = 37/249 (14%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D I+++ L ++ IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 41 LVDRRAIDVVETLQDAGYEAYIVGGAVRDLLLGLRPKDFDVATNATPEQVKGLFRRAFI- 99
Query: 70 VIPTSISYGTIKIICR----KKYFDITTLR--------------------------SDLI 99
+ + ++ + +++T R +
Sbjct: 100 ---IGKRFRIVHVVYGRGRENEVIEVSTFRAFLDNSAAEAVSGNERTSKAQLAGMHHAVD 156
Query: 100 TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHH 158
GR + D+ RRDFTINA+Y D + ++ +DY G++D + R ++ IGD
Sbjct: 157 ASGRVLRDNVWGPQDQDATRRDFTINAMYYDPRTQIVVDYHKGIDDAKKRMLRMIGDPAT 216
Query: 159 RILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R ED +RI+R RF A I+ ++ + L + R++ E+ KLL+
Sbjct: 217 RYREDPVRIIRAVRFAAKLAGKGFKIEPKTAKPLVECEPLLADVPQSRLFDEMLKLLQTG 276
Query: 217 NPLNAIVHM 225
+ L ++ +
Sbjct: 277 HALASVEQL 285
>gi|261493336|ref|ZP_05989862.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261496601|ref|ZP_05992981.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261307804|gb|EEY09127.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261310980|gb|EEY12157.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 443
Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats.
Identities = 80/414 (19%), Positives = 152/414 (36%), Gaps = 33/414 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ I+I+ L ++ IVGG +RD L+ +D DIAT P+ + RIF +
Sbjct: 22 KNAISIVDKLQIAGYEAYIVGGCIRDLLLEKKPKDFDIATNARPEEIQRIFGRQ---CRL 78
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSLRRD 121
+ I+ ++ F++ T R+ + G + + D+ RRD
Sbjct: 79 IGRRFRLAHIVYGREIFEVATFRAGHESHRNDKISKVSDEGMLLRDNVYGTLRDDAERRD 138
Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FT+NALY D + +I D+ G+ DLR + IG+ R ED +R+LR RF A
Sbjct: 139 FTVNALYYDIKRNLIFDFFNGIEDLRAGKLSLIGEPAIRYQEDPVRMLRAVRFMAKLDMF 198
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D L + + R++ E KLL+ L + +++ +F +
Sbjct: 199 -LDKATASPIRDMAALLTNIPAARLFDESLKLLQTGAGLKTYQLLREYELWQFLFPVLPA 257
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS-LPREIRYFLISFF 299
+ AE++ ++S I + + + + + + F
Sbjct: 258 --FFTVKGDSYAERMITKALNSTDERIADKLPVNPAFLFAALLWYPLREKMEQLKNEGGF 315
Query: 300 NCNFNQK-TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
N + + + + + + ++ AL + L + + Q L I
Sbjct: 316 NSHDAMMLAANDVLAESCKAIALHRRHTSVIRDIWALQFQ-LMKRTGNRLQQTLEHIKFR 374
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS--QEDLHHLLRK 410
+ ++ I G V W F + +L +R+
Sbjct: 375 AGFDLLV-----MRAEIEGGDLV-----ELSAWWHEYQFSNDGQRTELLKSVRQ 418
>gi|73748251|ref|YP_307490.1| polyA polymerase family protein [Dehalococcoides sp. CBDB1]
gi|73659967|emb|CAI82574.1| polyA polymerase family protein [Dehalococcoides sp. CBDB1]
Length = 418
Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats.
Identities = 73/414 (17%), Positives = 148/414 (35%), Gaps = 22/414 (5%)
Query: 9 WFHD---SDLINIL----SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
+ + ++ ++ L +VGG VRD L+N + +D D+ + +
Sbjct: 9 FLKNRLPPEINRLILHAAELAASQNLHLYLVGGLVRDFLLNKTPKDADLVLAANAIKFGQ 68
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ + + DI+T R++ D V D KAD RRD
Sbjct: 69 GLLEGFNYKATLHPRFNNLSADINGFKLDISTARNEFYPDPGKLPEVLEGDIKADLFRRD 128
Query: 122 FTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
F INA+ G ++D GL DL+ + + +D RI R R+
Sbjct: 129 FKINAMALSLSPQDFGCLVDPYNGLTDLKQHKLSVLHP--KSFRDDPSRIWRALRYSERL 186
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G +I S+ L + + + ++ ++R+ E+ + + P N ++ G+ K
Sbjct: 187 GF-DISSETLTLLQRDAQLIPLIGADRLRYEMECIFKEAKPENILLKAEETGVLKNSLPF 245
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
++ + + EA ++ + + +L DK ++ L + I L
Sbjct: 246 IKADNWPA-DKFAEARNMYGENVSPEIYLCLLSVRLDKPQAEALITGLHLSKYISACLRD 304
Query: 298 FFNCNFNQKTLSIPE-IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ + L + Y K + F + N + + + LS I
Sbjct: 305 YQCLAEHLAELGRVDLSPSRLYGILVKCKKEARQAFNIANDNPIVRKHLMLFQEELSGI- 363
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
L G D++ G PG + +L ++ +++ ++ R+
Sbjct: 364 -----KPCLKGTDLLTLGFAPGPDIKTVLAELLNLKLDGKIPSRTDEIDYVKRR 412
>gi|219849143|ref|YP_002463576.1| polynucleotide adenylyltransferase region [Chloroflexus aggregans
DSM 9485]
gi|219543402|gb|ACL25140.1| Polynucleotide adenylyltransferase region [Chloroflexus aggregans
DSM 9485]
Length = 422
Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats.
Identities = 76/401 (18%), Positives = 145/401 (36%), Gaps = 23/401 (5%)
Query: 29 SCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRK 86
+VGG VRD L+ L + +DID+A R+ + + T I ++GT +
Sbjct: 30 LWLVGGVVRDLLLELPIGRDIDLAVEGDVTRLAPLLATTLGGTITARHPAFGTATLAVDH 89
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ--------QGKVIDY 138
D+ R++ VV D RRDF+INA+ + D
Sbjct: 90 WIIDLAQTRTEYYPQPAVLPVVQPAPLTTDLARRDFSINAMAIRLVADDGRLLPMPLFDP 149
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL- 197
+ G DL R ++ + D R +D RILR R A + G
Sbjct: 150 LNGAVDLAARRLRLLHDRSLR--DDPTRILRGVRLAARLNLTPEPATAAQIETALTNGYL 207
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL--DQLSQVIEAEQ- 254
+L+ ERI +E+ L +P + + I + S ++L++ E
Sbjct: 208 ALLTPERIQTELCLTLSEPDPAAVVALADRWQVTSHIIPGLHWSSALAERLARYRHDEAG 267
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ + +L+ + + ++ +++ LP R LI ++++
Sbjct: 268 IAGLAPAEPVIAGLLLYDLSEDDLQAVRQRYHLPTPFRRLLIELSRLRSLAQSITTTLSP 327
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374
A + + + + + W+ PLTGDD+ G
Sbjct: 328 SQLDALLHSYSTATIAVLHYAATTSTASL-------IARYLREWRPLRPPLTGDDLQAMG 380
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ PG ++G +L + ++ + + ++L A+
Sbjct: 381 VAPGPQLGRLLRDLRAATLDGTVTDRVTAERWVYQQLAAAR 421
>gi|189485160|ref|YP_001956101.1| CCA-adding tRNA nucleotidyltransferase [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287119|dbj|BAG13640.1| CCA-adding tRNA nucleotidyltransferase [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 461
Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats.
Identities = 80/451 (17%), Positives = 151/451 (33%), Gaps = 58/451 (12%)
Query: 16 INILSLLN----KGEDKSCIVGGAVRDSLMNLSVQDIDIATTIL---------PDRVMRI 62
+I+ ++ + IVGG VRD + +D+DI +I
Sbjct: 11 KSIIDKISITAVENSFDVYIVGGFVRDLFIKREPKDLDIMVCGRGSNLSMQSAGINFSKI 70
Query: 63 FSKTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+K P +GT K+ + + R + + D+LRRD
Sbjct: 71 LAKKYKLDKPVIFERFGTSKLFMDSEEVEFVMPRREYYNANSRNPDTQIASVEQDALRRD 130
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRT----IKFIGDAHHRILEDYLRILRFFRFFAHY 177
FTINAL+ I + + + + +D LRILR R
Sbjct: 131 FTINALFLRLNDMKILDFTSQGVVDIKNKIIRVTDPSNIEIIFKQDPLRILRAVRQSVQL 190
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
I+++ A + ++I+S ERI EINK+L K P A M + +I +
Sbjct: 191 DF-KIETETYNAMKISSPSIEIVSPERIRDEINKILIEKIPSKAFKIMDEINLSVKILPE 249
Query: 238 VQEISLDQLSQVIEAEQVFEW--------KIDSLLRFIVLISWQDKK------------- 276
V + + + + VF K D +LR L+ K
Sbjct: 250 VARLKNLEQLEKYHTDDVFVHTLKVLDRTKNDIILRMAALLHDTGKYATCKKNGGRICFY 309
Query: 277 --------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ K+ +E +S + K S + +
Sbjct: 310 GHDAESAKEAEAVLKRLKYSKEFIQKTVSVIKNHMYPKMYSDDWTDGAVRRFVKRCSGEL 369
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWK-------KPLFPLTGDDVVK-YGIPPGKK 380
I + + ++++ I K KP LTG ++++ + GK
Sbjct: 370 DLIMEISRADYGKDSNDVKLVKLKKRIEDLKLKNMLYPKPEL-LTGREMMRIFNRLSGKW 428
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+ ++ + +++E+ ++R++
Sbjct: 429 IRKAKSKIEEMRFENP-GITKEEAIEIIREM 458
>gi|115379393|ref|ZP_01466497.1| CCA-adding enzyme [Stigmatella aurantiaca DW4/3-1]
gi|115363600|gb|EAU62731.1| CCA-adding enzyme [Stigmatella aurantiaca DW4/3-1]
Length = 183
Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats.
Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
++++L L + + +VGG VRD L ++ +D D+A++ LP V F KVIPT
Sbjct: 14 PILDVLHRLRELGFAAFLVGGCVRDILRGVAPKDFDVASSALPQEVQGAFK----KVIPT 69
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYADQ 131
I +GT+ ++ + ++TT RS+ T D D RRDFTINA+ D
Sbjct: 70 GIQHGTVTVVIGGNHVEVTTFRSEGDYLDGRRPSSVTFERDITQDLSRRDFTINAMAYDP 129
Query: 132 QGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
G+V +D GG+ DL+ I+ + R ED LR +R RF
Sbjct: 130 VGQVLVDPFGGMEDLQAHLIRCVRSPLERFSEDGLRPMRAVRF 172
>gi|42524817|ref|NP_970197.1| poly(A) polymerase [Bdellovibrio bacteriovorus HD100]
gi|39577027|emb|CAE78256.1| poly(A) polymerase [Bdellovibrio bacteriovorus HD100]
Length = 409
Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats.
Identities = 69/320 (21%), Positives = 129/320 (40%), Gaps = 21/320 (6%)
Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66
W DS + I+ L ++ +VGG VRD L+ + +D DIAT+ P++V +
Sbjct: 20 EDWI-DSYALRIVRNLQDAGFETYLVGGCVRDLLVGIHPKDFDIATSAHPNQVRKKVPNA 78
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSD-------LITDGRYAKVVFTRDWKADSLR 119
+ + + + F++ T R + D + + D++R
Sbjct: 79 ----YVIGRRFKLVLVKRGDQQFEVATFRRNVTQEELADQGDDSVEGDNYFGTVEEDAVR 134
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT NA++ D Q K+IDY GG+ D+ NR ++ IGD R +ED +RILR R
Sbjct: 135 RDFTCNAVFYDPGQHKLIDYCGGIQDIENRVLRMIGDPKARFIEDPIRILRAIRLSHKL- 193
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+I++ A + LK R E K L K P A + +++ I ++I +
Sbjct: 194 HFSIETTMRAAIAECSSELKKSVLPRRREEWLKFLRLKEPHLAFMELFDLHILEQILPGL 253
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291
++ + ++ + L ++++ + L +
Sbjct: 254 HSVFVDAHKMEIFEIHLARINLSGIDKNDPIELFAGFMMAFMKAQYGEEPWNHDDLSNDA 313
Query: 292 RYFLISFFNCNFNQKTLSIP 311
+ ++ ++I
Sbjct: 314 KLAYFMREEMGIFKQEIAIF 333
>gi|220915422|ref|YP_002490726.1| poly(A) polymerase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953276|gb|ACL63660.1| poly(A) polymerase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 556
Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats.
Identities = 69/239 (28%), Positives = 98/239 (41%), Gaps = 17/239 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D D + +++ L ++ +VGG VRD L+ + +D D+AT P V IF R
Sbjct: 54 DGDALKVIARLRHMHHQAYLVGGCVRDLLLGATPKDFDVATDAHPGEVRAIFRNCRL--- 110
Query: 72 PTSISYGTIKIICR-KKYFDITTLRSDLITDGR----------YAKVVFTRDWKADSLRR 120
+ + R K ++ T R + + + DS+RR
Sbjct: 111 -IGRRFRLAHVYFRAGKVIEVATFRKNPTDVAEDVGEGEGDLLITRDNVFGTAEEDSVRR 169
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFT+N L+ D G+VIDYVGG DL I IGD R+ ED +R LR RF A G
Sbjct: 170 DFTVNGLFYDVATGEVIDYVGGRADLEAHRISTIGDPEIRMREDPVRALRAVRFAARLGF 229
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I D A + L + R+ E KLL A + G I +
Sbjct: 230 -TIAPDTFEAMRRTSGELARCAPARVLEETFKLLRCGGSARAFELLRACGALPVILPAL 287
>gi|197120710|ref|YP_002132661.1| poly(A) polymerase [Anaeromyxobacter sp. K]
gi|196170559|gb|ACG71532.1| poly(A) polymerase [Anaeromyxobacter sp. K]
Length = 556
Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats.
Identities = 69/239 (28%), Positives = 98/239 (41%), Gaps = 17/239 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D D + +++ L ++ +VGG VRD L+ + +D D+AT P V IF R
Sbjct: 54 DGDALKVIARLRHMHHQAYLVGGCVRDLLLGATPKDFDVATDAHPGEVRAIFRNCRL--- 110
Query: 72 PTSISYGTIKIICR-KKYFDITTLRSDLITDGR----------YAKVVFTRDWKADSLRR 120
+ + R K ++ T R + + + DS+RR
Sbjct: 111 -IGRRFRLAHVYFRAGKVIEVATFRKNPTDVAEDVGEGEGDLLITRDNVFGTAEEDSVRR 169
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFT+N L+ D G+VIDYVGG DL I IGD R+ ED +R LR RF A G
Sbjct: 170 DFTVNGLFYDVATGEVIDYVGGRADLEAHRISTIGDPEIRMREDPVRALRAVRFAARLGF 229
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I D A + L + R+ E KLL A + G I +
Sbjct: 230 -TIAPDTFEAMRRTSGELARCAPARVLEETFKLLRCGGSARAFELLRACGALPVILPAL 287
>gi|262341231|ref|YP_003284086.1| tRNA nucleotidyltransferase [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272568|gb|ACY40476.1| tRNA nucleotidyltransferase [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 471
Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats.
Identities = 88/456 (19%), Positives = 164/456 (35%), Gaps = 63/456 (13%)
Query: 16 INILSL----LNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTRYKV 70
I + K + S +VGG VRD L+ +D+DI T ++ + SK
Sbjct: 9 KKIFHIVSFSAQKIKQDSYVVGGYVRDFLLGKIKSKDVDILTIGEGIKLAQEVSKNMKPH 68
Query: 71 --IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
I +GT + C + + R + + + D RRDFTINAL
Sbjct: 69 PKIKIFRRFGTAMLKCENQKIEFVGSRKESYHFYSRKPFIRLGSLQDDQNRRDFTINALA 128
Query: 129 ADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
++ID GGL+DL+ + ++ ++ +D LR++R RF + I+
Sbjct: 129 ISLNRDNYGELIDPFGGLSDLKKKILRTPLNSDITYSDDPLRMMRAIRFATQL-QFTIEE 187
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ K K + I+S+ERI E NK+L ++ P ++ +Y G+ I ++ +
Sbjct: 188 YSFKSIQKNKNRINIVSTERIIEEFNKILLSEKPSIGLLLLYKSGLLSIILPELTLLKGI 247
Query: 245 QLSQVIEAEQVFEWKI------------DSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
+ + + F + LR+ L+ K + K
Sbjct: 248 EKKNGCKHKDNFYHTLQVVDNISQVKTNSLWLRWAALLHDIGKAYTKNFTKIGWSFHAHE 307
Query: 293 YFLISFFNCNFNQ---------------------------KTLSIPEIKKLFYLYGDKVM 325
+ F + +S I++L + G +
Sbjct: 308 FVGSKMVPNIFQRLKLPKGGPMKYVKKMIQYSYKPIALIGNQISDSAIRRLLFDLGKD-L 366
Query: 326 IAKLKIFLALHYNNLTHQDTC---------FILQVLSDIIHWKKPLFPLTGDDVVK-YGI 375
+K+ +A N + +Q L + + P++G+D++K + I
Sbjct: 367 EDLMKLCIADITTNNIEKRKQYQKNIYILMERIQKLEEKDRIQNWKSPISGNDIMKTFQI 426
Query: 376 PPGKKVGNILVHCKQEWINSSFQLS-QEDLHHLLRK 410
P K++G I K + +L+K
Sbjct: 427 DPCKEIGIIKNFIKDSILEGKISNDFHSAYLFMLKK 462
>gi|146329312|ref|YP_001209046.1| poly(A) polymerase PcnB [Dichelobacter nodosus VCS1703A]
gi|146232782|gb|ABQ13760.1| poly(A) polymerase PcnB [Dichelobacter nodosus VCS1703A]
Length = 430
Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats.
Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 12/234 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I I L++ ++ +VGG +RD+L+ +D DIAT P+ + +F R
Sbjct: 28 AIAICRQLHEAGYEAYLVGGCLRDTLLQQPPKDFDIATNARPEEIAALFRNCRL----IG 83
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD------GRYAKVVFTRDWKADSLRRDFTINALY 128
+ + + ++ T R+ G + + D LRRDF IN+LY
Sbjct: 84 RRFRLAHLHYGRDIIEVATFRASADEQVKTDADGHVLEDNHYGTMEEDVLRRDFIINSLY 143
Query: 129 ADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D Q V IDY+ L D+R R I+ IG R +ED +R+LR RF A
Sbjct: 144 YDVQTGVLIDYLDALADIRARQIRLIGTPSARYIEDPVRMLRAARFAAKLSMPLEAQTQQ 203
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ ++ + + R++ E+ KL + + + + +F +F DV I
Sbjct: 204 AIASCRQELRA-VPAARLFDEVQKLFMSGYGEKSYEILRSFELFAMLFPDVDRI 256
>gi|171464074|ref|YP_001798187.1| poly(A) polymerase [Polynucleobacter necessarius subsp. necessarius
STIR1]
gi|171193612|gb|ACB44573.1| poly(A) polymerase [Polynucleobacter necessarius subsp. necessarius
STIR1]
Length = 466
Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 17/228 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD + +S +D D+AT PD+V R+F K R
Sbjct: 41 LLSKNAVKVTHTLQQAGYEAFIVGGAVRDLALGISPKDFDVATNATPDQVQRLFRKARL- 99
Query: 70 VIPTSISYGTIKIIC----RKKYFDITTLR-------SDLITDGRYAKVVFTRDWKADSL 118
+ + + + +++T R + GR + D+
Sbjct: 100 ---IGRRFQIVHVTFFGKGHPEIIEVSTFRALLDNAGDHVAESGRILRDNVWGSQGEDAA 156
Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTINA+Y D + + DY GG+ D++ +T++ IGD R ED +R+LR RF A
Sbjct: 157 RRDFTINAMYYDPSSETVLDYHGGMADMQKKTLRMIGDPAKRYREDPVRMLRAVRFAAKT 216
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
G +D+ +K K L + S R++ EI KLL + I +
Sbjct: 217 GF-ELDNATRAPIVKLGKLLSDIPSARLFDEILKLLMSGYSWRVIQGL 263
>gi|86156707|ref|YP_463492.1| hypothetical protein Adeh_0279 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85773218|gb|ABC80055.1| hypothetical protein Adeh_0279 [Anaeromyxobacter dehalogenans
2CP-C]
Length = 549
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 69/239 (28%), Positives = 98/239 (41%), Gaps = 17/239 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D D + +++ L ++ +VGG VRD L+ + +D D+AT P V IF R
Sbjct: 54 DGDALKVIARLRHMHHQAYLVGGCVRDLLLGATPKDFDVATDAHPGEVRAIFRNCRL--- 110
Query: 72 PTSISYGTIKIICR-KKYFDITTLRSDLITDGR----------YAKVVFTRDWKADSLRR 120
+ + R K ++ T R + + + DS+RR
Sbjct: 111 -IGRRFRLAHVYFRAGKVIEVATFRKNPTDVAEDVGEGEGDLLITRDNVFGTAEEDSVRR 169
Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFT+N L+ D G+VIDYVGG DL I IGD R+ ED +R LR RF A G
Sbjct: 170 DFTVNGLFYDVATGEVIDYVGGRADLEAHRISTIGDPEIRMREDPVRALRAVRFAARLGF 229
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I D A + L + R+ E KLL A + G I +
Sbjct: 230 -TIAPDTFEAMRRTAGELARCAPARVLEETFKLLRCGGSARAFELLRACGALPVILPAL 287
>gi|52424981|ref|YP_088118.1| PcnB protein [Mannheimia succiniciproducens MBEL55E]
gi|52307033|gb|AAU37533.1| PcnB protein [Mannheimia succiniciproducens MBEL55E]
Length = 425
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 16/243 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ ++++ LN+ ++ +VGG +RD L++ +D D+AT PD++ IF +
Sbjct: 1 MISKNALSVVEKLNRNGYEAYVVGGCLRDLLLDKKPKDFDVATNARPDQIQAIFQRQ--- 57
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSL 118
+ I+ + ++ T R++ G + + D+
Sbjct: 58 CRLVGRRFRLAHIMFGRDIIEVATFRANHSDIENENASKQSEEGMLLRDNVYGTLEQDAE 117
Query: 119 RRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NALY + V DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 118 RRDFTVNALYYSPKDNLVYDYFNGIEDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL 177
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+D K LK + R++ E KLL++ + + +F+++F
Sbjct: 178 DMF-LDKSSAPHIRKLAHLLKNIPPARLFDESLKLLQSGQGVKTYNLLREYHLFEQLFPS 236
Query: 238 VQE 240
+
Sbjct: 237 LMP 239
>gi|238026306|ref|YP_002910537.1| poly(A) polymerase [Burkholderia glumae BGR1]
gi|237875500|gb|ACR27833.1| Poly(A) polymerase [Burkholderia glumae BGR1]
Length = 525
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 69/374 (18%), Positives = 137/374 (36%), Gaps = 40/374 (10%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R
Sbjct: 76 LISRNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 134
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR--------------------------------SD 97
+ + + ++ +++T R
Sbjct: 135 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPADAPASAPADAAPPRRMKRDELDRRTHA 191
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDA 156
+ GR + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD
Sbjct: 192 VDASGRVLRDNVWGEQHEDAARRDFTINAMYYDPATQTVLDYHDGMADVRARLLRMIGDP 251
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R ED +R+LR RF A G +I+ + + + R++ E+ KLL +
Sbjct: 252 ATRYREDPVRMLRVVRFAAKLGF-DIEPHTREPIQPLADLINNVPAARLFDEMLKLLLSG 310
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK 276
+ L + + + G+ + + + + Q + + D+ +R +S
Sbjct: 311 HALACLRQLRSEGLHHGLLPLLDVV--LEQPQGEKFITLALNNTDARVRAGKSVSPGFLF 368
Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
+ L + + + ++ + L L
Sbjct: 369 ATLLWHDMRQRWNQNVANGEFPVPALQRAMDDVLEMQTEKLAIHKRYSADMREIWGLQLR 428
Query: 337 YNNLTHQDTCFILQ 350
+ + +L+
Sbjct: 429 LEKRSGRSAMRLLE 442
>gi|82702011|ref|YP_411577.1| poly(A) polymerase [Nitrosospira multiformis ATCC 25196]
gi|82410076|gb|ABB74185.1| poly(A) polymerase [Nitrosospira multiformis ATCC 25196]
Length = 471
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 136/396 (34%), Gaps = 46/396 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
S + + S L + + IVGGA RD ++ L +D D+AT P+ V +F ++R
Sbjct: 44 SSGALKVTSGLQEAGYSAFIVGGAARDLVLGLEPKDFDVATNATPEEVRAVFRRSRI--- 100
Query: 72 PTSISYGTIKIICRKKYFDITTLRS-------------DLITDGRYAKVVFTRDWKADSL 118
+ + ++ + +++T R GR + + D+
Sbjct: 101 -IGRRFRLVHVMWGAETVEVSTFRGGPSGETGGLGADEHADEHGRLLRDNVFGSQEEDAR 159
Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NAL+ D ++ DY+ G DL+ R ++ IGD R ED +R+LR R A
Sbjct: 160 RRDFTVNALFFDPVHEEIWDYLNGYEDLKARRLRIIGDPVRRYREDPVRMLRVVRLGAKL 219
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G ID D + L + R++ E+ KLL + + L + + G+ +
Sbjct: 220 GM-EIDPDTAAPISELAPLLLHVPPSRLFDEMLKLLLSGHALACVTDLQKRGLHHGLLPM 278
Query: 238 VQEISLDQL----------SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287
+ I L + Q L ++ + + +
Sbjct: 279 LDVIREQPLGKRFITLALKNTDERVRQEKPVSPGFLFAALLWHEVLASWNAYQATGERPV 338
Query: 288 PREI-----------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330
P R + Q + + F L + A
Sbjct: 339 PALHLAMNDVLAAQDKNLAIPRRYDAIMKEIWMMQPRFAHRSGSRPFRLLENPRFRAAYD 398
Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L + ++ + ++ ++
Sbjct: 399 FMLLRCESGEVDEELGKWWEAFQHASSREREAMLIS 434
>gi|261749258|ref|YP_003256943.1| tRNA nucleotidyltransferase [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497350|gb|ACX83800.1| tRNA nucleotidyltransferase [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 472
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 81/446 (18%), Positives = 153/446 (34%), Gaps = 63/446 (14%)
Query: 16 INILSLLNKGEDKS----CIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKV 70
NI +++ + +VGG VRD L+ + +D+DI T R+ + SK
Sbjct: 9 RNIFRIISLSAKRIQQDCYVVGGYVRDFLLGKRIYEDLDILTIGEGIRLAKEVSKHINPT 68
Query: 71 --IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
I +GT + + + R + ++ + D RRDFTINAL
Sbjct: 69 PRINIFKRFGTAMLEYKNHKIEFVGSRKESYHLYSRKPIIEIGSLQDDQKRRDFTINALA 128
Query: 129 ADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ D GGL+DL +T++ ++ +D LR++R RF ID
Sbjct: 129 ISLNERNYGELIDPFGGLSDLERKTLRTPLNSDVTYSDDPLRMMRAIRFATQLQFF-IDK 187
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ + + + I+S ERI E NK+L +K P + +Y G+ I ++ +
Sbjct: 188 SSFQSIQRNRNRINIVSMERIIEEFNKILLSKKPSIGLFLLYESGLLSIILPELTLLQGI 247
Query: 245 QLSQVIEAEQVFEW------------KIDSLLRFIVLISWQDKKSILSMAKKFSLPRE-- 290
+ + + F LR++ L+ K K
Sbjct: 248 EEKNGYKHKDNFYHTLQVVDNISQEESNSIWLRWVALLHDIGKAYTKKFLPKIGWSFHAH 307
Query: 291 --------------------------IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324
+ S+ + I++ + G +
Sbjct: 308 ELVGSKMVPKIFQRLKLPKGEPMRYVKKMIQHSYKPVALIGDNTNDSAIRRFLFDMGKDI 367
Query: 325 MIAKLKIFLALHYNNLTHQD---------TCFILQVLSDIIHWKKPLFPLTGDDVV-KYG 374
+K+ +A + ++ L + + P++G+D++ +
Sbjct: 368 -EDLIKLCIADITTKNVEKKNRYTNNLFLLLERIKKLEEKDRIQNWKSPISGNDIMNAFH 426
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLS 400
I P KK+G I K+ +
Sbjct: 427 INPCKKIGVIKNFIKESILEGRISNE 452
>gi|254413927|ref|ZP_05027696.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Microcoleus chthonoplastes PCC 7420]
gi|196179524|gb|EDX74519.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Microcoleus chthonoplastes PCC 7420]
Length = 926
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 74/442 (16%), Positives = 135/442 (30%), Gaps = 50/442 (11%)
Query: 12 DSDLINIL----SLLNKGEDKSCIVGGAVRDSLMNLSVQ-----DIDIATTI-------- 54
L +L + +VGGAVRD L+ Q D+D+
Sbjct: 486 APALWQLLTQAAQEAQERGWHLYLVGGAVRDVLLADESQPLLLEDVDLVVDGFHRAADVG 545
Query: 55 ----LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGRY 104
L + + R ++ T ++ + DI T R++
Sbjct: 546 AGVTLAKALRERYPNARL---DVHGAFQTAALLWHNDPVLDSLWIDIATARTEFYPYPAA 602
Query: 105 AKVVFTRDWKADSLRRDFTINALYADQQGKV------IDYVGGLNDLRNRTIKFIGDAHH 158
V + D RRDFTINA+ A G+ +D+ GG+ DLR+R I+ + +
Sbjct: 603 NPEVEASSIRQDLYRRDFTINAMAARLTGRRGEALPLLDFFGGMLDLRSRQIRVLHA--N 660
Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS----------E 208
+ED RI R RF G + + G+ S E
Sbjct: 661 SFIEDPTRIYRAVRFAVRLGFELEPQTQDYIQYALESGVYERSLGANTRAPALETRLKAE 720
Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
+ +LEA A + + G + + ++ L + + + D L+
Sbjct: 721 LKYILEAPYWQRAFQLIGSLGALRCLHPSLKLDPLLWWRVRLIDRWLRRFDPDQTLKHWQ 780
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ + + + Q + E + V++ +
Sbjct: 781 MRLEVLIAHLEPQERGKVAENLQLPIDSIERLQHLGQAQTEVVESLPQCQRPSEVVLLLR 840
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
L H ++ + PL G+D+ + G PG +L
Sbjct: 841 QYKLPTLVL-IAVHSYRAIRRKLWHYFTNLATVQAPLNGNDLKRLGYKPGPHYKEMLDAL 899
Query: 389 KQEWINSSFQLSQEDLHHLLRK 410
++ Q + L +
Sbjct: 900 LTATLDGVIQDEADA-QAFLEQ 920
>gi|251792689|ref|YP_003007415.1| poly(A) polymerase [Aggregatibacter aphrophilus NJ8700]
gi|247534082|gb|ACS97328.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Aggregatibacter aphrophilus NJ8700]
Length = 421
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/243 (23%), Positives = 111/243 (45%), Gaps = 16/243 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + ++ L + ++ +VGG +RD L+ +D D+AT P+++ IF +
Sbjct: 1 MINRNALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAIFQRQ--- 57
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----------WKADSL 118
+ I+ ++ ++ T R++ + + + D+
Sbjct: 58 CRLVGRRFRLAHIMFGREIIEVATFRANHAESHNEKHAKQSEEGMLLRDNVYGTLEQDAE 117
Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDF++NALY + Q + D+ G+ DL+N ++ IGD R ED +R+LR RF A
Sbjct: 118 RRDFSVNALYYNPQDNTLKDFFNGIEDLKNGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL 177
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+D + + LK + R++ E KLL+A + + G+F+++F
Sbjct: 178 DMF-LDKPSEMPIKELAHLLKNIPPARLFEESLKLLQAGYGVKTYWLLRQYGLFEQLFPL 236
Query: 238 VQE 240
+ +
Sbjct: 237 LSK 239
>gi|332296074|ref|YP_004437997.1| CBS domain containing protein [Thermodesulfobium narugense DSM
14796]
gi|332179177|gb|AEE14866.1| CBS domain containing protein [Thermodesulfobium narugense DSM
14796]
Length = 867
Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats.
Identities = 68/395 (17%), Positives = 132/395 (33%), Gaps = 11/395 (2%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
KS +VGG VRD L+N+ D+DI ++ + +K + + T I ++
Sbjct: 476 KSFLVGGCVRDLLLNIHSNDMDIVVEGDAIKLAQEVNKYINGEFFSYEKFRTATIKNKEI 535
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
FD + R++ + ++ D D RRDF+IN L +
Sbjct: 536 KFDFASARTEFYSCPAAKPLIEYSDLHNDMYRRDFSINTLAISLNSDSYGKMIDFFGGYE 595
Query: 148 RTIKFIGD--AHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSE 203
+ED RI+R RF G D + + +++ K I
Sbjct: 596 DIKLKRIRVLHPLSYVEDPTRIIRAIRFEFQLGFKIDKADEELIKNAMELKLFNVISFDV 655
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-EISLDQLSQVIEAEQVFEWKIDS 262
P I+ M +FK I V SLD+L + + +
Sbjct: 656 LKEELKLMFSHGSCPGLIIMRMKELNVFKLIHPKVSFNFSLDRLREYFACLKSEGFGSYL 715
Query: 263 LLRFIVLISWQDKKSILSMAKKF-SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+ + I + S + F + + ++ S + +F +
Sbjct: 716 KEWWFLCILPIIYNILKSEDRFFKRKWKFTKKEVLYIEKLKKFLLKFSRKRNQNIFKDFE 775
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKK 380
+ + + + L + + + +TG+++ I P
Sbjct: 776 LFETLEGIPVEIICFLKILEEKPLNDYVIWFE--KNRGVFKPLITGEELSNRSDIRP-AF 832
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+G IL + K+E + +++L + K I+
Sbjct: 833 IGEILRNLKKERFLGNISTYEDEL-KFVNKFISEK 866
>gi|88705696|ref|ZP_01103406.1| polyA polymerase [Congregibacter litoralis KT71]
gi|88700209|gb|EAQ97318.1| polyA polymerase [Congregibacter litoralis KT71]
Length = 403
Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats.
Identities = 72/355 (20%), Positives = 135/355 (38%), Gaps = 22/355 (6%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
++ L E ++ +VGGAVRD L+ +D DIAT P+ V +F +R +
Sbjct: 1 MARLRDKEHQAYLVGGAVRDLLLGGHPKDFDIATDATPEEVHALFGNSRI----IGRRFR 56
Query: 79 TIKIICRKKYFDITTLRSDLIT-----------DGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ ++TT R G + + D++RRD T+NAL
Sbjct: 57 IVHVRFGREVIEVTTFRGHHDDTEATTGAKRSSRGLLLRDNVFGTLEEDAVRRDLTVNAL 116
Query: 128 YADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y D +V D VGGL+DL R ++ IGD R ED +R+LR RF A G N++
Sbjct: 117 YYDSGSFEVFDQVGGLDDLEARQVRVIGDPATRYREDPVRMLRCLRFAAKLGF-NVEKSS 175
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL--- 243
A + L + R++ E KL N + + F+ +F D ++
Sbjct: 176 GAAIPRLAALLDDIPPARLFDEFGKLFLTGNAQATLRLLREYRCFEHLFPDSARLADSDG 235
Query: 244 --DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
D+L + + + +++ ++ ++ E +
Sbjct: 236 FYDRLLDAAMGNTDQRIRQEKPVTPAFILAAVLWPAVCERRQQLENQGEKPVPAMHGAGQ 295
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ I + F + ++ +L++ + ++
Sbjct: 296 EIVAQACQRIAIPRRFSMPMREIWEMQLRLPRTEGKRAIELMSKRRFRAAYDFLL 350
>gi|294102644|ref|YP_003554502.1| Polynucleotide adenylyltransferase region [Aminobacterium
colombiense DSM 12261]
gi|293617624|gb|ADE57778.1| Polynucleotide adenylyltransferase region [Aminobacterium
colombiense DSM 12261]
Length = 404
Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats.
Identities = 85/413 (20%), Positives = 156/413 (37%), Gaps = 39/413 (9%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ + +L K K+ +VGGAVRD L+ V D+D+A + + R+F
Sbjct: 5 NALELLRFFEKEGIKAWVVGGAVRDYLLGRQSVSDVDLAVSGGEKEIQRVFPGAVI---- 60
Query: 73 TSI-SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
T I ++ FD+ LR+ + D RRDFT+NA+ D
Sbjct: 61 VGKAQKRTAVISFNREAFDVFPLRNK--------------PVEEDLARRDFTVNAMALDS 106
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+G + D G +DLR ++F G+ HR+ +D +R LR RF + +G ID D +A
Sbjct: 107 RGHIYDPFDGFSDLRKGILRFNGNPLHRLKDDPIRALRLCRFASTHG-LRIDGDSSLAVE 165
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------ 245
+ +S ERI E+ + + L + + G+ F ++++ +
Sbjct: 166 NFASHITGVSQERIGHEVARAFDGDGFL-FFRFVRSHGLMAVFFPFLEKLWGQRLEAGSV 224
Query: 246 ------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
L + + E + D ++ L + + + +S P R ++
Sbjct: 225 YEGDCLLHSFLSLQSAQEQRRDKSVQVAALFQHLNYDFVNELFVSWSWPSASREEIVVLI 284
Query: 300 NCNFNQKTLSIPEIKKLFYL-YGDKVMIAKLKI--FLALHYNNLTHQDTCFILQVLSDII 356
+ Y G+ ++ + T +L ++
Sbjct: 285 KNLPLFLEPLPLDRAIAVYDSLGEDIVRKLFDLSHAFLSSSGKPTDVWRDNLLTYNRVVL 344
Query: 357 HWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
K F G ++ + GI G VG + +Q + S+ED++ L
Sbjct: 345 RLKCIDFLPDGKELKRVLGIEEGPLVGLLKTGLRQAAAKGEIE-SREDVNKWL 396
>gi|219870496|ref|YP_002474871.1| polyA polymerase [Haemophilus parasuis SH0165]
gi|219690700|gb|ACL31923.1| polyA polymerase [Haemophilus parasuis SH0165]
Length = 477
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 61/241 (25%), Positives = 109/241 (45%), Gaps = 16/241 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S+ I I++ L K + +VGG +RD L+ +D DIAT P+ + +IF +
Sbjct: 51 SNAIAIINKLQKNGYEVYMVGGCIRDLLLGQKAKDFDIATNARPEEIQKIFGRQ---CRL 107
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSLRRD 121
+ I+ ++ +++ T R+D ++ G + + D+ RRD
Sbjct: 108 IGRRFRLAHIVFGREIYEVATFRADHHSNATEKMSKTSEAGMLLRDNVYGTLREDAERRD 167
Query: 122 FTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
F++NA Y D + D+ G++DL+ + IGD R ED +R+LR RF A
Sbjct: 168 FSVNAFYYDVSHNLIYDFFNGIDDLKAGKLALIGDPVTRYQEDPVRMLRAIRFMAKLDMF 227
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D K LK + + R++ E KLL++ + G+F+++F +
Sbjct: 228 -LDKASDEPIRKMAVLLKNIPAARLFDESLKLLQSGYGHKTYELLRKYGLFEQLFPVLSP 286
Query: 241 I 241
Sbjct: 287 F 287
>gi|262369854|ref|ZP_06063181.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter
johnsonii SH046]
gi|262314893|gb|EEY95933.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter
johnsonii SH046]
Length = 486
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/246 (23%), Positives = 117/246 (47%), Gaps = 9/246 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+++++ L K ++ IVGG VRD ++ L+ +D D T P +V +F + +
Sbjct: 17 ILDVIDALTKAGYEAYIVGGGVRDMMLGLNPKDFDAVTNATPSQVKEVFGRRCRIIG--- 73
Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ ++ T R+ G + + D RRDF+INA+Y
Sbjct: 74 RRFELAHVYSGRELVEVATFRAPPKKEVTSAQGMILRDNNWGTIEQDFARRDFSINAMYY 133
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ V+ D+ ++D++N+T++ +GDA R ED +R+LR RF A G V
Sbjct: 134 QPRKGVVLDFCHAVDDIKNKTLRLLGDAQTRFEEDPVRMLRTLRFAAKLGFSIDQQILDV 193
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+++ + L+ +S R++ E KL + + + + GI+K++F D+Q + +
Sbjct: 194 FTLEMTQLLRDVSPHRLYDESQKLFTMGHLNRVLPMLIDFGIWKQLFADIQPNITPFIER 253
Query: 249 VIEAEQ 254
+
Sbjct: 254 AAKNTD 259
>gi|332298021|ref|YP_004439943.1| poly(A) polymerase [Treponema brennaborense DSM 12168]
gi|332181124|gb|AEE16812.1| poly(A) polymerase [Treponema brennaborense DSM 12168]
Length = 426
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/295 (23%), Positives = 125/295 (42%), Gaps = 19/295 (6%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
SI + K D+D + ++S+L + + +VGGAVRD L++ +D DI T P R+ +I
Sbjct: 26 SIPREK--IDADALRVISMLREYGFDAYVVGGAVRDLLVDKDPKDFDIVTDAPPPRIKKI 83
Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
F +R + + + K F+++T RS + D RRDF
Sbjct: 84 FRNSRI----IGRRFRLVHVFFGPKIFEVSTFRSITDG----SVGNSFGSMDEDVQRRDF 135
Query: 123 TINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
T+NALY D + I DYVGG+ D+R I+ + ED +R+LR ++ A G
Sbjct: 136 TLNALYYDPVREQIVDYVGGVKDIRKGVIRPVIPIERIFEEDPVRMLRAVKYAATTGC-K 194
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV-------HMYNGGIFKEI 234
+ K+ L +S R+ E+ K++ + + + + +MY +
Sbjct: 195 LPGYLKRKIRKSAHLLSPVSPSRLTEELMKIINSGHAYDIVKFSLEVDLYMYLQPAATAM 254
Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289
+ D + E + + + L + D + L+ + + R
Sbjct: 255 MYADPKYEHDYFVHLKELDALHVVDPSARLGQKLAYLIYDFTAGLTDWTEEAESR 309
>gi|319762115|ref|YP_004126052.1| poly(a) polymerase [Alicycliphilus denitrificans BC]
gi|330826054|ref|YP_004389357.1| poly(A) polymerase [Alicycliphilus denitrificans K601]
gi|317116676|gb|ADU99164.1| poly(A) polymerase [Alicycliphilus denitrificans BC]
gi|329311426|gb|AEB85841.1| poly(A) polymerase [Alicycliphilus denitrificans K601]
Length = 522
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 61/265 (23%), Positives = 113/265 (42%), Gaps = 37/265 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D +++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 40 PELVDRRATDVVRTLKQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKGLFRRAF 99
Query: 68 YKVIPTSISYGTIKIICR----KKYFDITTLRSDLIT----------------------- 100
+ + ++ + +++T R+ +
Sbjct: 100 I----IGKRFRIVHVVHGRGREHEVIEVSTFRAYMDNAAAEQVSGNEKTSKAQLSGMQHA 155
Query: 101 ---DGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156
GR + D+ RRDFT+NA+Y D + + V+D+ G+ D + R ++ IGD
Sbjct: 156 VDASGRVLRDNVWGPQDEDATRRDFTVNAMYYDPETQVVVDFHKGIEDAKRRVLRMIGDP 215
Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI--KAKKGLKILSSERIWSEINKLLE 214
R ED +RI+R RF A + A + L+ + R++ E+ KLL+
Sbjct: 216 ATRYREDPVRIIRAVRFAAKLSPLGFALEPKTAKPLLACEPLLQEVPQSRLFDEMLKLLQ 275
Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ L ++ + G+ K I+ +
Sbjct: 276 TGHALASVAQLRGLGLEKGIYPLLD 300
>gi|282896159|ref|ZP_06304184.1| PolyA polymerase [Raphidiopsis brookii D9]
gi|281198959|gb|EFA73835.1| PolyA polymerase [Raphidiopsis brookii D9]
Length = 914
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 82/455 (18%), Positives = 152/455 (33%), Gaps = 64/455 (14%)
Query: 12 DSDLINILSLLNKG----EDKSCIVGGAVRDSLM------NLSVQDIDIATTI------- 54
L +L+ ++ +VGGAVRD L+ L + DID+
Sbjct: 467 APQLWQLLTRASQAAQARGWHLYLVGGAVRDLLLVNDASNQLMLHDIDLVVDGFHQSADV 526
Query: 55 -----LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGR 103
L + +I+ +R ++ T ++ K + DI T R++
Sbjct: 527 GAGVELARELQQIYQNSRL---EIHGAFQTAALLWHKDPELDCLWVDIATARTEFYPYPA 583
Query: 104 YAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHR 159
V + D RRDFTINA+ G+++D+ GGL DLR+R I+ + +
Sbjct: 584 ANPEVEASSIRQDLYRRDFTINAMALRLTSPHSGELLDFFGGLIDLRSRKIRVLHP--NS 641
Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS----------EI 209
+ED RI R RF +G + G+ + + E+
Sbjct: 642 FIEDPTRIYRGVRFAIRFGFAIEQRTAEYINYAINSGVYDRTVQENIKTPALHTRLKAEL 701
Query: 210 NKLLEAKNPLNAIVHM------YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW----K 259
+L+A +A+ + ++ + + + E+ ++
Sbjct: 702 KLILQASYWQSALKLLDQLGALQCIHYTCKLNHGILRELVLLEKLLKIQERFWQPAQQLP 761
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
L+R +LIS + + +A+ L L +
Sbjct: 762 PTWLIRLEILISSLEPEYRSKVAENLQLSDSNVNRLTKLEAAQVEINRELVTCELASAIF 821
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379
+ + + +A+ ++ L GDD+ K G PG
Sbjct: 822 NLLQKYDSGTLMLIAV------KSSREIRRKIWYYWRDLVHVQPLLKGDDLKKMGYKPGP 875
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
IL H ++ + ++ LL K+I S
Sbjct: 876 IFKQILDHLLFATLDGKIK-TKTQAVELLTKVINS 909
>gi|228982659|ref|ZP_04142918.1| Polynucleotide adenylyltransferase/metal-dependent phosphohydrolase
[Bacillus thuringiensis Bt407]
gi|228776842|gb|EEM25150.1| Polynucleotide adenylyltransferase/metal-dependent phosphohydrolase
[Bacillus thuringiensis Bt407]
Length = 449
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 64/444 (14%), Positives = 140/444 (31%), Gaps = 56/444 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPT 73
L+ + + ++ VGG VRD MN +DID+ P+ + I S+ Y V
Sbjct: 10 LLQVAQEIKNHGGRTFYVGGYVRDMFMNKESKDIDVEIYGITPETLRTILSQFGY-VDEF 68
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL----RRDFTINALYA 129
+G + D + R ++ TD + D D+L RRDF +NA+
Sbjct: 69 GAFFGI--LKIYGVDIDFSMPRKEVKTDDGHTGFDVVVDPFLDTLTASKRRDFRMNAIMV 126
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D + + I H +ED LR R +F + + + +
Sbjct: 127 DVLTEEVIDHFNGVSDIQLGIIR-HIDEHTFIEDELRAFRACQFASRFNFTIAEETIDLC 185
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNA-------------IVHMYNGGIFKEIFL 236
+ E + K + + + + +
Sbjct: 186 KGFRFSLPRERIFEEFLKALMKSEKPSIFFSYMREMLIVKKLFPELDALIDCPQNPIFHP 245
Query: 237 DVQEIS-----LDQLSQVIEAE------------QVFEWKIDSLLRFIVLISWQDKKS-- 277
+ + +D+L+ + I ++++ I+ +
Sbjct: 246 EGDVWTHTMMVIDELASLKHLSSNPLAFMLLGPTHDMGKPITTVIQEDGQITARGHAEEG 305
Query: 278 ---ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
K+ + + + +++ + +++ K + L + + A
Sbjct: 306 VPVAKQFLKRITNDKRLIKNVLNMVENHMRPNSIAFGSDKAVRKLMVATNIEDIVLFGEA 365
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDDVVKYGIPPGKKVGNI 384
H ++ +V + L ++G D++ G+ PGK+ +
Sbjct: 366 DHKGRGISEEKKDYTEVKEWFHQKIEKLQTVGEQSTISPLVSGKDLIDAGLKPGKEFSIL 425
Query: 385 LVHCKQEWINSSFQLSQEDLHHLL 408
L I + LS+E++ +
Sbjct: 426 LKKAFDLQIENG--LSKEEILEKI 447
>gi|301631513|ref|XP_002944842.1| PREDICTED: hypothetical protein LOC100491036 [Xenopus (Silurana)
tropicalis]
Length = 745
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 61/265 (23%), Positives = 113/265 (42%), Gaps = 37/265 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D ++++ L + IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 38 PELVDRRAVDVVRTLQDAGFAAYIVGGAVRDLLLGLRPKDFDVATNATPEQVKGLFRRAF 97
Query: 68 YKVIPTSISYGTIKIICR----KKYFDITTLR--------------------------SD 97
+ + ++ + +++T R
Sbjct: 98 I----IGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNSAAEQVSGNERTSKAQLSDMQHA 153
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFT+NA+Y D + + V+DY G+ D + R ++ IGD
Sbjct: 154 VDASGRVLRDNVWGPQDQDAARRDFTVNAMYYDPETQVVVDYHKGIEDAQKRVLRMIGDP 213
Query: 157 HHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214
R ED +RI+R RF A ++ + ++ L+ + R++ E+ KLL+
Sbjct: 214 ATRYREDPVRIIRAVRFAAKLSSLGFALEPKTGKPLVASQHLLQEVPQSRLFDEMLKLLQ 273
Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ L ++ + G+ K I+ +
Sbjct: 274 TGHALASVQQLQKLGLEKGIYPLLD 298
>gi|330813685|ref|YP_004357924.1| tRNA nucleotidyltransferase [Candidatus Pelagibacter sp. IMCC9063]
gi|327486780|gb|AEA81185.1| tRNA nucleotidyltransferase [Candidatus Pelagibacter sp. IMCC9063]
Length = 252
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 84/240 (35%), Positives = 125/240 (52%), Gaps = 10/240 (4%)
Query: 13 SDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + I LLN + + VGG VRD ++ ++DID+AT+ P ++++I
Sbjct: 9 PEAVKIYKLLNPLGSEENTPTKFVGGCVRDLILGHKIKDIDLATSFPPQKIVKILENENI 68
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
K+ +I++G + F+ITTLR D + DGRYAK+ FT+DWK DS RRDFTINA+Y
Sbjct: 69 KINIKAINFGVVTAYINNYLFEITTLRKDFLQDGRYAKIEFTKDWKLDSQRRDFTINAIY 128
Query: 129 ADQQ------GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ ++ D G DL N IKFI +A I EDY+R LR+ RFF Y
Sbjct: 129 CELNTKSNESFQLFDPHNGKEDLINGKIKFIKNAKTSINEDYVRALRYLRFFYSYSNYEH 188
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D L + K +K LS R+ +E+ K++ L ++ F I+ D I+
Sbjct: 189 DPYVLEQIFENKNNIKNLSQNRLKTELKKIIIINPKLKIEKNLLIKDFFSYIYPDFNSIA 248
>gi|121608734|ref|YP_996541.1| poly(A) polymerase [Verminephrobacter eiseniae EF01-2]
gi|121553374|gb|ABM57523.1| poly(A) polymerase [Verminephrobacter eiseniae EF01-2]
Length = 535
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 64/265 (24%), Positives = 112/265 (42%), Gaps = 37/265 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D ++++ L + + IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 39 PELVDRRAADVVATLKQAGFAAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKSLFRRAF 98
Query: 68 YKVIPTSISYGTIKIICR----KKYFDITTLR--------------------------SD 97
+ + ++ + +++T R
Sbjct: 99 I----IGRRFRIVHVVHGRGREHEVIEVSTFRAYLDNAAAGQVSGNEKTSKAQLSGMQHA 154
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156
+ GR + D+ RRDFTINA+Y D V+DY GL D R +T++ IG+
Sbjct: 155 VDASGRVLRDNVWGPQDEDATRRDFTINAMYYDPVSQIVVDYHKGLQDARKKTLRMIGEP 214
Query: 157 HHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214
R ED +RI+R RF A ID+ +++ L + R++ E+ KLL+
Sbjct: 215 TLRYREDPVRIIRAVRFAAKLSALGFAIDAKTAAPLRQSQALLADVPQSRMFDEMLKLLQ 274
Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ + I + G+ + I+ +
Sbjct: 275 TGHAIATIEQLRKLGLTQGIYPLLD 299
>gi|118594498|ref|ZP_01551845.1| poly(A) polymerase [Methylophilales bacterium HTCC2181]
gi|118440276|gb|EAV46903.1| poly(A) polymerase [Methylophilales bacterium HTCC2181]
Length = 411
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 65/245 (26%), Positives = 109/245 (44%), Gaps = 10/245 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I I+ +L K ++ IVGGA+RD LMN + +D DIAT P+++ +F ++R
Sbjct: 28 SKHAIEIIKVLKKNNYEAYIVGGAIRDILMNKNPKDFDIATDATPEQIKLLFRRSRI--- 84
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ + +++T R+ K K D+ RRDFT N++
Sbjct: 85 -IGRRFKLVHVMDGRGIIEVSTFRAKPHNKEVMRNGVTKDNEYGTLKEDAERRDFTCNSI 143
Query: 128 YADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y + KV ID GG+ D+R + + IGD R ED +RILR RF A +
Sbjct: 144 YYNPLTKVLIDLYGGVKDIRAKKLAMIGDPKKRFDEDSVRILRAIRFSAKLNLTIDKNIL 203
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
K + + R++ EI KL + L + + K F + +
Sbjct: 204 EAIESKKSQLQS-IPYSRLFDEIMKLFLTGHALQSFDLFKRFNLSKYYFPSFESKNPKAQ 262
Query: 247 SQVIE 251
S +++
Sbjct: 263 SFLLK 267
>gi|29653638|ref|NP_819330.1| poly(A) polymerase [Coxiella burnetii RSA 493]
gi|153208652|ref|ZP_01946904.1| poly(A) polymerase [Coxiella burnetii 'MSU Goat Q177']
gi|161829839|ref|YP_001596236.1| poly(A) polymerase [Coxiella burnetii RSA 331]
gi|165919793|ref|ZP_02219536.1| poly(A) polymerase [Coxiella burnetii RSA 334]
gi|212218121|ref|YP_002304908.1| poly(A) polymerase [Coxiella burnetii CbuK_Q154]
gi|29540900|gb|AAO89844.1| poly(A) polymerase [Coxiella burnetii RSA 493]
gi|120575838|gb|EAX32462.1| poly(A) polymerase [Coxiella burnetii 'MSU Goat Q177']
gi|161761706|gb|ABX77348.1| poly(A) polymerase [Coxiella burnetii RSA 331]
gi|165916876|gb|EDR35480.1| poly(A) polymerase [Coxiella burnetii RSA 334]
gi|212012383|gb|ACJ19763.1| poly(A) polymerase [Coxiella burnetii CbuK_Q154]
Length = 439
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/377 (18%), Positives = 141/377 (37%), Gaps = 27/377 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+K ++ +VGG VRD L++ +D DIAT P + ++F +R
Sbjct: 39 SPNALRVLYRLSKSGYEAYLVGGGVRDMLLSYHPKDFDIATNARPHEIRKLFKNSRL--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLR--------------SDLITDGRYAKVVFTRDWKADS 117
+ + + + +++T R ++ + D+
Sbjct: 96 -IGRRFRLVHVYFPNEIIEVSTFRANAEELLKEEPLSEMQKTGATMLSEDNTYGTIEEDA 154
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFT+NALY + VID+ GG+ DL R I+ IGD R ED +R+LR R A
Sbjct: 155 WRRDFTVNALYYNITDFSVIDFTGGMRDLHQRLIRMIGDPTQRYHEDPVRLLRAIRLAAK 214
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I D K L+ + S R+++E+ K+ + + + + + +F
Sbjct: 215 LDF-KIHPDTEEPLKKLHNLLRHVPSARLFTEVLKIFFEGHAVRSYQLLKQTHYMRTLFP 273
Query: 237 DV-------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289
+ ++ + L ++ + L L + + + ++
Sbjct: 274 EAATILEKTRQPLYENLIKLALKATDERFHNQQSLNPGFLFAIFLWPPVQELMQQHFKKH 333
Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
+ + + Q+ ++I + + V + + + H F
Sbjct: 334 KRLFPALYHGINTALQRQVTILPLPRRLTAMMRSVWMLQYHLERRRHTRVYRIAQQRFFR 393
Query: 350 QVLSDIIHWKKPLFPLT 366
+ ++ PLT
Sbjct: 394 AAFDFLELRERAGEPLT 410
>gi|260222990|emb|CBA33107.1| hypothetical protein Csp_B17390 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 531
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 67/263 (25%), Positives = 121/263 (46%), Gaps = 37/263 (14%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D IN++ L + ++ +VGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 40 LVDERAINVVRTLKQAGFEAYVVGGAVRDLLVGLRPKDFDVATNATPEQVKGLFRRAFI- 98
Query: 70 VIPTSISYGTIKIICR----KKYFDITTLR--------------------------SDLI 99
+ + ++ + +++T R +
Sbjct: 99 ---IGRRFRIVHVVYGRGREHEVIEVSTFRAYLDNAAAEQVAGNERTSKSELAGMKHAVD 155
Query: 100 TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHH 158
+ GR + + D++RRDFTINA+Y D + ++ +DY GL D ++RT++ IGDA
Sbjct: 156 STGRVLRDNVWGPQEEDAVRRDFTINAMYYDPETQIVVDYHNGLKDSKSRTLRMIGDAAT 215
Query: 159 RILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R ED +RI+R RF A ++ +K++K L + R++ E+ KLL+
Sbjct: 216 RYREDPVRIIRAVRFAAKLSPLGFKLEPKTAGPLVKSQKLLNDVPQSRLFDEMLKLLQTG 275
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ 239
+ L +I + G+ I+ +
Sbjct: 276 HALASIEQLKVLGLATGIYPLLD 298
>gi|154707640|ref|YP_001425127.1| poly(A) polymerase [Coxiella burnetii Dugway 5J108-111]
gi|154356926|gb|ABS78388.1| poly(A) polymerase [Coxiella burnetii Dugway 5J108-111]
Length = 439
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/377 (18%), Positives = 141/377 (37%), Gaps = 27/377 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+K ++ +VGG VRD L++ +D DIAT P + ++F +R
Sbjct: 39 SPNALRVLYRLSKSGYEAYLVGGGVRDMLLSYHPKDFDIATNARPHEIRKLFKNSRL--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLR--------------SDLITDGRYAKVVFTRDWKADS 117
+ + + + +++T R ++ + D+
Sbjct: 96 -IGRRFRLVHVYFPNEIIEVSTFRANAEELLKEEPLSEMQKTGATMLSEDNTYGTIEEDA 154
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFT+NALY + VID+ GG+ DL R I+ IGD R ED +R+LR R A
Sbjct: 155 RRRDFTVNALYYNITDFSVIDFTGGMRDLHRRLIRMIGDPTQRYHEDPVRLLRAIRLAAK 214
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I D K L+ + S R+++E+ K+ + + + + + +F
Sbjct: 215 LDF-KIHPDTEEPLKKLHNLLRHVPSARLFTEVLKIFFEGHAVRSYQLLKQTHYMRTLFP 273
Query: 237 DV-------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289
+ ++ + L ++ + L L + + + ++
Sbjct: 274 EAATILEKTRQPLYENLIKLALKATDERFHNQQSLNPGFLFAIFLWPPVQELMQQHFKKH 333
Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
+ + + Q+ ++I + + V + + + H F
Sbjct: 334 KRLFPALYHGINTALQRQVTILPLPRRLTAMMRSVWMLQYHLERRRHTRVYRIAQQRFFR 393
Query: 350 QVLSDIIHWKKPLFPLT 366
+ ++ PLT
Sbjct: 394 AAFDFLELRERAGEPLT 410
>gi|212213205|ref|YP_002304141.1| poly(A) polymerase [Coxiella burnetii CbuG_Q212]
gi|212011615|gb|ACJ18996.1| poly(A) polymerase [Coxiella burnetii CbuG_Q212]
Length = 438
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/377 (18%), Positives = 141/377 (37%), Gaps = 27/377 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+K ++ +VGG VRD L++ +D DIAT P + ++F +R
Sbjct: 39 SPNALRVLYRLSKSGYEAYLVGGGVRDMLLSYHPKDFDIATNARPHEIRKLFKNSRL--- 95
Query: 72 PTSISYGTIKIICRKKYFDITTLR--------------SDLITDGRYAKVVFTRDWKADS 117
+ + + + +++T R ++ + D+
Sbjct: 96 -IGRRFRLVHVYFPNEIIEVSTFRANAEELLKEEPLSEMQKTGATMLSEDNTYGTIEEDA 154
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFT+NALY + VID+ GG+ DL R I+ IGD R ED +R+LR R A
Sbjct: 155 WRRDFTVNALYYNITDFSVIDFTGGMRDLHQRLIRMIGDPTQRYHEDPVRLLRAIRLAAK 214
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I D K L+ + S R+++E+ K+ + + + + + +F
Sbjct: 215 LDF-KIHPDTEEPLKKLHNLLRHVPSARLFTEVLKIFFEGHAVRSYQLLKQTHYMRTLFP 273
Query: 237 D-------VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289
+ ++ + L ++ + L L + + + ++
Sbjct: 274 ESATILEKTRQPLYENLIKLALKATDERFHNQQSLNPGFLFAIFLWPPVQELMQQHFKKH 333
Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
+ + + Q+ ++I + + V + + + H F
Sbjct: 334 KRLFPALYHGINTALQRQVTILPLPRRLTAMMRSVWMLQYHLERRRHTRVYRIAQQRFFR 393
Query: 350 QVLSDIIHWKKPLFPLT 366
+ ++ PLT
Sbjct: 394 AAFDFLELRERAGEPLT 410
>gi|121605882|ref|YP_983211.1| poly(A) polymerase [Polaromonas naphthalenivorans CJ2]
gi|120594851|gb|ABM38290.1| poly(A) polymerase [Polaromonas naphthalenivorans CJ2]
Length = 540
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 62/278 (22%), Positives = 120/278 (43%), Gaps = 40/278 (14%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D ++++ +L + ++ IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 43 PKLVDERAMDVVHVLKQAGFQAYIVGGAVRDLLVGLRPKDFDVATDATPEQVKSLFRRAF 102
Query: 68 YKVIPTSISYGTIKIICR----KKYFDITTLRSDL------------------------- 98
+ + +I + +++T R+ +
Sbjct: 103 I----IGRRFRIVHVIYGRGREHEVIEVSTFRAHMDNALAEQVGGNERTSKSELAGMKHA 158
Query: 99 -ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDA 156
+ GR + + D+ RRDFTINA+Y D + ++ +DY G+ D + + ++ IG+
Sbjct: 159 VHSSGRVLRDNVWGPMEEDAARRDFTINAMYYDPETEIVVDYHNGIGDAKKKIVRMIGNP 218
Query: 157 HHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214
R ED +RI+R RF A + + L + R++ E+ KLL+
Sbjct: 219 ALRYREDPVRIIRAVRFGAKLNALGFKFEEKTSAPLKEMCGLLADVPQSRLFDEMLKLLQ 278
Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQ---EISLDQLSQV 249
+ L +I + G+ I+ + E++ D ++
Sbjct: 279 TGHSLASIAQLKELGMGTGIYPLLDVVVEMADDPFLKL 316
>gi|256829045|ref|YP_003157773.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfomicrobium baculatum DSM 4028]
gi|256578221|gb|ACU89357.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfomicrobium baculatum DSM 4028]
Length = 459
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 72/450 (16%), Positives = 154/450 (34%), Gaps = 60/450 (13%)
Query: 19 LSLLNK-GEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSK--TRYKVIPTS 74
L LN+ ++K+ VGG VRD +DIDI D + + V
Sbjct: 8 LERLNESFQNKAFFVGGCVRDKFFGYDSKDIDIEVYGHDFDAICEVVKGIPVVQDVFECG 67
Query: 75 ISYGTIKII-CRKKYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYA 129
S+ +K+ DI R ++ T G + + + S RRDF++NAL
Sbjct: 68 KSFNVVKVRLICGADLDIAVPRREVSTGGGHKDYVILPDPSMSPEEASARRDFSMNALME 127
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
G++ID+ G+ DL+ + ++ IG + L+D LR+LR +F +G + + +
Sbjct: 128 TFDGEIIDFHNGVQDLKTQRLRAIG---NSFLDDPLRVLRGMQFAGRFGLRVEEHTAYLC 184
Query: 190 S---------------IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
+ + +K L + + A + +
Sbjct: 185 ALISGRVLAMSKERIWGEWEKLLSKSDKPSFGIQFLEDTGAIVLYPELSALDGLRQDPTH 244
Query: 235 FLD-----VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLIS------------------ 271
+ ++ LD+ +++ E + LL +
Sbjct: 245 HPEGCVLTHTKMVLDEGARIALKENLEHQSRVILLLACICHDFGKALTTTMVDGRISCHG 304
Query: 272 ----WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
+ + + + + + ++ +++KL +
Sbjct: 305 HAEAGSEMTAAFLDSIGAPAALREPVSQLCQHHMDLISGDVTAKQVRKLANKINRSSSLG 364
Query: 328 KLK-IFLALHYNNLTHQDTCFILQVLSDIIHWK-----KPLFPLTGDDVVKYGIPPGKKV 381
LK + +A + + ++ + ++ + P L G D+V+ G+ G
Sbjct: 365 LLKHLIVADNLGRGSASRYPAVVDEMMELAKAEDVTNTAPKPLLQGRDLVRMGLKQGPMF 424
Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
G IL ++ ++ E + ++ + L
Sbjct: 425 GRILNDVYEKQLDGQICSLDEAVEYVAKGL 454
>gi|167854734|ref|ZP_02477513.1| putative poly(A) polymerase [Haemophilus parasuis 29755]
gi|167854148|gb|EDS25383.1| putative poly(A) polymerase [Haemophilus parasuis 29755]
Length = 477
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 61/241 (25%), Positives = 110/241 (45%), Gaps = 16/241 (6%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S+ I I++ L K ++ +VGG +RD L+ +D DIAT P+ + +IF +
Sbjct: 51 SNTIAIINKLQKNGYEAYMVGGCIRDLLLGQKAKDFDIATNARPEEIQKIFGRQ---CRL 107
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSLRRD 121
+ I+ ++ +++ T R+D ++ G + + D+ RRD
Sbjct: 108 IGRRFRLAHIVFGREIYEVATFRADHHSNATEKMSKTSEAGMLLRDNVYGTLREDAERRD 167
Query: 122 FTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
F++NA Y D + D+ G++DL+ + IGD R ED +R+LR RF A
Sbjct: 168 FSVNAFYYDVSHNLIYDFFNGIDDLKAGKLALIGDPVTRYQEDPVRMLRAIRFMAKLDMF 227
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+D K LK + + R++ E KLL++ + G+F+++F +
Sbjct: 228 -LDKASDEPIRKMAVLLKNIPAARLFDESLKLLQSGYGHKTYELLRKYGLFEQLFPVLSP 286
Query: 241 I 241
Sbjct: 287 F 287
>gi|153216761|ref|ZP_01950601.1| poly(A) polymerase [Vibrio cholerae 1587]
gi|124114149|gb|EAY32969.1| poly(A) polymerase [Vibrio cholerae 1587]
Length = 417
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 77/389 (19%), Positives = 144/389 (37%), Gaps = 33/389 (8%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R +
Sbjct: 2 LYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL----IGRRFR 57
Query: 79 TIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLRRDFTINA 126
I+ + ++ T R G + D+ RRDFTINA
Sbjct: 58 LAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINA 117
Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF +I+ D
Sbjct: 118 MYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLDF-DIEED 176
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ L+ + + R++ E K+L+A + L M +F+++F + E
Sbjct: 177 TAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTIAEH--FT 234
Query: 246 LSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+ EQ+ + +D+ +R + +M + R N
Sbjct: 235 ADHSSKTEQMLDLVLDATDIRVEEDLRINPAFMFAAMLWYPMIDLADRLMESLNLNEFDA 294
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
S + ++ + L + ++L ++ ++
Sbjct: 295 MTEASNRILDEVVKRIAIPRRHTTTIRDIWQLQQRLPRRSGKRAFRLL-ELNKFRA---- 349
Query: 365 LTGDDVVKY-GIPPGKKVGNILVHCKQEW 392
G D ++ G G G + W
Sbjct: 350 --GFDFLEMRGEIEG---GET-KQLAEWW 372
>gi|153953879|ref|YP_001394644.1| hypothetical protein CKL_1254 [Clostridium kluyveri DSM 555]
gi|219854494|ref|YP_002471616.1| hypothetical protein CKR_1151 [Clostridium kluyveri NBRC 12016]
gi|146346760|gb|EDK33296.1| Cca [Clostridium kluyveri DSM 555]
gi|219568218|dbj|BAH06202.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 399
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 85/402 (21%), Positives = 151/402 (37%), Gaps = 24/402 (5%)
Query: 16 INILSLLN----KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I I+ + K K+ IVGGAVRD+++ ++DIDI P+ ++ K
Sbjct: 12 IAIIEAIRDLCIKKGVKAYIVGGAVRDAILKNKIKDIDICVNYNPNSIVTQLK--GIKYY 69
Query: 72 PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
++ T + D+ R + V D D RRDFTIN+L D
Sbjct: 70 KYYKNFQTAAVTFQNGVCIDLIRCRKEYYKRHGDLPKVEPSDIYDDLYRRDFTINSLAYD 129
Query: 131 QQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
G I D GG+ D++N+ +K I +R ED RI R ++ YG D +
Sbjct: 130 IVGNSILDIYGGIGDIKNKVLKKIHFNSYR--EDPTRIFRAVKYCVRYGFYLEDKWEIEK 187
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
IK I + + + E N ++ +L+
Sbjct: 188 CIKEGIFNTISNDRIMKEIYSLCSEINWIENI------RLCNDLKIFNIDGQALEVEYSN 241
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
E + +F +K + + S +DK + + + L R+++ + F
Sbjct: 242 CEKDLIFVYKNIDMRILRLFYSLRDKVYVNILIENSILNRKLKNTIKYFSEELHMVINSI 301
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ + M IFL+ HY ++ + I + L G+D
Sbjct: 302 KNTLDNYKLYQLLRSMNDYKLIFLSWHY--------ELNYKIYNYINNMSTYKLSLNGND 353
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
++ GI GK + IL + +N++ + +E L + ++
Sbjct: 354 IIDLGIKEGKSIKKILNGVMKIELNTALKWEKEYLLKNIGEM 395
>gi|225425222|ref|XP_002266814.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|296088167|emb|CBI35659.3| unnamed protein product [Vitis vinifera]
Length = 537
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 15/237 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L+ L K + +VGG VRD ++ + +D DI T+ V+R F +
Sbjct: 83 MIAKPTRYVLNGLKKKGYEVYLVGGCVRDLILKRTPKDFDIITSAELKEVLRAFPRCEV- 141
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDG-------RYAKVVFTRDW--KADSLRR 120
+ + ++++ + G R D+ + L+R
Sbjct: 142 ---VGKRFPICHVHVNDTIVEVSSFSTSGKRTGRKLDYILRRPPDCDDHDYIRWRNCLQR 198
Query: 121 DFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTIN L D K+ DY+GG+ D++ ++ + A+ +ED RILR R A G
Sbjct: 199 DFTINGLMFDPYTKIVYDYMGGMQDIKKAKVRTVIPANISFVEDCARILRGVRIAARLGF 258
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
D + + + L RI E+N +L + ++ ++ G+ + +
Sbjct: 259 -RFTKDIAHSVRELSCSVLRLDKGRILMEMNYMLAYGSAEASLRLLWKFGLLEILLP 314
>gi|325578734|ref|ZP_08148781.1| polyA polymerase family protein [Haemophilus parainfluenzae ATCC
33392]
gi|325159558|gb|EGC71690.1| polyA polymerase family protein [Haemophilus parainfluenzae ATCC
33392]
Length = 430
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 59/241 (24%), Positives = 109/241 (45%), Gaps = 16/241 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I ++ L + ++ IVGG +RD L+ +D D+AT PD++ +F +
Sbjct: 12 MFSRNAITVVEKLQRQGYEAYIVGGCLRDLLLGKHPKDFDVATNARPDQIQAVFQRQ--- 68
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----------WKADSL 118
+ I+ + ++ T R+ + + + + D+
Sbjct: 69 CRLVGRRFRLAHIMFGRDVIEVATFRASHSDARSENQAKQSDEGMLLRDNVYGTIEQDAE 128
Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NALY + Q + DY G++DL+N ++ IGD R ED +R+LR RF A
Sbjct: 129 RRDFTVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRMLRSVRFMAKL 188
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
++ + LK + R++ E KLL++ N + + G+F+++F
Sbjct: 189 DMF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQSGNGVKTYKLLRQYGLFEQLFPS 247
Query: 238 V 238
+
Sbjct: 248 L 248
>gi|330815625|ref|YP_004359330.1| putative polynucleotide adenylyltransferase [Burkholderia gladioli
BSR3]
gi|327368018|gb|AEA59374.1| putative polynucleotide adenylyltransferase [Burkholderia gladioli
BSR3]
Length = 533
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 69/371 (18%), Positives = 135/371 (36%), Gaps = 37/371 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + + L + ++ IVGGAVRD L ++ +D D+AT P V R+F + R
Sbjct: 78 LISRNAVRVTDTLQQAGFRAFIVGGAVRDLLFGIAPKDFDVATDATPTEVQRLFRRARL- 136
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR-----------------------------SDLIT 100
+ + + ++ +++T R +
Sbjct: 137 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPAEAPPADAPPPRRMKRDELDRRTHAVDA 193
Query: 101 DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHR 159
GR + + D+ RRDFTINA+Y D + + DY G+ D+R R ++ IGD R
Sbjct: 194 SGRVLRDNVWGEQHEDAARRDFTINAMYYDPATQTVLDYHDGMADMRARLLRMIGDPATR 253
Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219
ED +R+LR RF A G +I+ + + + R++ E+ KLL + + L
Sbjct: 254 YREDPVRMLRVVRFAAKLGF-DIEPHTRDPIKPLADLINNVPAARLFDEMLKLLLSGHAL 312
Query: 220 NAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279
+ + G+ + + + + Q + + D+ +R +S + L
Sbjct: 313 ACLKQLRGEGLHHGLLPLLDVV--LEQPQGEKFITLALNNTDARVRAGKSVSPGFLFATL 370
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ + + ++ + L L
Sbjct: 371 LWHDMRQRWNQYVANGEFPVPALQRAMDDVLEMQTEKLAIHKRYSADMREIWGLQLRLEK 430
Query: 340 LTHQDTCFILQ 350
+ + +L+
Sbjct: 431 RSGRSAIRLLE 441
>gi|312143713|ref|YP_003995159.1| Polynucleotide adenylyltransferase region [Halanaerobium sp.
'sapolanicus']
gi|311904364|gb|ADQ14805.1| Polynucleotide adenylyltransferase region [Halanaerobium sp.
'sapolanicus']
Length = 548
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 71/414 (17%), Positives = 144/414 (34%), Gaps = 19/414 (4%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYK 69
++ + +VGG VRD L+ L +D+D+ + KT+
Sbjct: 141 RREFILMLAEEAAALNYNLYLVGGQVRDLLIGLPLNKDLDLLIEGDLEEFFIHLKKTKGL 200
Query: 70 VIPTSISYGTIKIICR--KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + T + DI + R + +V D +D RRDFTIN L
Sbjct: 201 EYDYNNKFST-GFLHNQYGYSIDIASCREEKYHFPGSLPLVEKADLFSDLYRRDFTINTL 259
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFA-HYGEKNIDS 184
D + V + + ++ +D LRILR RF + + +S
Sbjct: 260 VMDLHPERRGIVYDFFGAIYDLKNKMLNVLHNYSFRDDPLRILRGIRFQILKDFKLSAES 319
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
L + L+ ER+++E+ L +A+ ++ + I ++
Sbjct: 320 VELSKKSLKLYDYQNLAVERVFAELKYLFKAQKDISQFSALLLNQIPVLKLIEADF---- 375
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
Q+ + K + LL ++ ++ + F E +
Sbjct: 376 ---QLDMKKDANFLKGEKLLAISRENNFTVNHFLVRLIILFYNREESKIKQWPISEYEAK 432
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIF----LALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ E + D + ++ L + + + F+ + S + +
Sbjct: 433 LFSHKEWENVDAKFYQLDDPALKYRELESYQPEELIMAAVINYEQQFVEAIFSHLQKRTE 492
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
P+ G D++K G+ G ++ IL+ + + + + F+ Q L + LI S
Sbjct: 493 IKVPINGHDLLKMGLKQGPEIKEILLKVRDQILRNKFKDRQSAL-NYAEDLIKS 545
>gi|256544465|ref|ZP_05471838.1| poly A polymerase [Anaerococcus vaginalis ATCC 51170]
gi|256399790|gb|EEU13394.1| poly A polymerase [Anaerococcus vaginalis ATCC 51170]
Length = 226
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 79/227 (34%), Positives = 129/227 (56%), Gaps = 6/227 (2%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
++ L ++ +VGGA+RD L+ + DID+ T P+++M+IFS K+I
Sbjct: 4 KYLVKRLEDSGFETYLVGGALRDKLLGEKIHDIDLTTRARPEQIMKIFSD--MKLIDIGK 61
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG-RYAKVV-FTRDWKADSLRRDFTINALYADQQG 133
+GTIK+I + + F+IT+ R++ R+ + F+ + D RRDFTINA+ ++ G
Sbjct: 62 KFGTIKVIYKSEEFEITSFRAESFYKDKRHPDKISFSNTIEEDLKRRDFTINAMA-ERNG 120
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
K+ID G DL+N+ I+ +G+ + RI EDYLR LR RF I+ + A
Sbjct: 121 KIIDLFDGKKDLKNKIIRAVGNPYERIEEDYLRALRAVRFATVLDF-EIEKNLKNAIKNK 179
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
K ++ +S ERI EI+K+L +KNP I + N + + IF +V++
Sbjct: 180 KNNIEEISKERIRDEIDKILLSKNPSRGIRLLENLDLLEYIFPEVKK 226
>gi|260914325|ref|ZP_05920794.1| polyA polymerase [Pasteurella dagmatis ATCC 43325]
gi|260631426|gb|EEX49608.1| polyA polymerase [Pasteurella dagmatis ATCC 43325]
Length = 499
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 58/241 (24%), Positives = 108/241 (44%), Gaps = 16/241 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ + I ++ L++ ++ IVGG +RD L+ +D D+ T+ P+++ IF +
Sbjct: 78 MINRNAIAVIEKLHRQGFEAYIVGGCLRDLLLGKHPKDFDVVTSARPEQIQNIFQRQ--- 134
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLI-----------TDGRYAKVVFTRDWKADSL 118
+ I+ + ++ T R++ +G + + D+
Sbjct: 135 CRLVGRRFRLAHIMFGRDIIEVATFRANHTESRNENHAKRSEEGMLLRDNVYGTIEQDAE 194
Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 195 RRDFTVNALYYNPQDNTLRDYFNGIEDLKAGKLRLIGDPATRYQEDPVRMLRSIRFMAKL 254
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
++ + LK + R++ E KLL+A + + G+F ++F
Sbjct: 255 DMF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGYGVKTYKLLREYGLFDQLFPS 313
Query: 238 V 238
+
Sbjct: 314 L 314
>gi|159029735|emb|CAO87813.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 899
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 76/428 (17%), Positives = 149/428 (34%), Gaps = 51/428 (11%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQ-----DIDIATTI--------LPDRVMRIFSKTR-Y 68
K +VGGAVRD L+ DID+ + +
Sbjct: 476 QKRGWHLYLVGGAVRDLLLATERDSLLLQDIDLVVDGCHRAAGVGAGVELANCLQEIYPG 535
Query: 69 KVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
+ + T ++ K + DI T R++ V + D RRDF
Sbjct: 536 ARLSIHGEFQTAALLWHKDERFGSLWVDIATARTEFYPYPASNPQVEASSIRQDLYRRDF 595
Query: 123 TINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
TINAL ++G+++D+ GG+ DLR + I+ + + +ED RI R RF
Sbjct: 596 TINALAIRLTSPKEGELLDFFGGMLDLRAQHIRVLHA--NSFIEDPTRIYRAVRFATRLR 653
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWS----------EINKLLEAKNPLNAIVHMYNG 228
+ G+ S ++ + E+N +LEA +A+ + +
Sbjct: 654 FVIEPLTENYIRYAIESGVYDRSRQQNQNAPALQSRLKAELNYILEADYWESALAKLADL 713
Query: 229 GIFKEIFLDVQ-----EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK 283
G + D+ L LS+ ++ + L+R +LI+ +++A
Sbjct: 714 GALHCLHGDLSLNRALWRQLRCLSRWLDCLSLELPVNVWLMRLELLIASLAVGERIAIAN 773
Query: 284 KFSLPRE--IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
LP++ R + + + ++ + + + L + +
Sbjct: 774 NLQLPKDTVERLQKLEVMEKEISNNFAYDRPVSQIVSFFNGYQVPSLLLVAVRSQTRIRA 833
Query: 342 HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401
+ + W + P+ G+D+ G PG + ++L ++
Sbjct: 834 L--------IWQYLTKWSQIEAPIDGNDLKALGYQPGPQFKSLLATVLGATLDGIVSNKS 885
Query: 402 EDLHHLLR 409
E + + R
Sbjct: 886 EAMAFIAR 893
>gi|330836498|ref|YP_004411139.1| poly(A) polymerase [Spirochaeta coccoides DSM 17374]
gi|329748401|gb|AEC01757.1| poly(A) polymerase [Spirochaeta coccoides DSM 17374]
Length = 443
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 7/233 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D+D + L + ++ IVGGAVRD L+ +D DIAT P +V R+F R
Sbjct: 31 LIDADAAWSVRKLQQSGAEAYIVGGAVRDLLVGHVPKDFDIATNASPRQVQRMFWNARI- 89
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ K +++T R + D+ RRDFTINALY
Sbjct: 90 ---IGKRFKLVHLVFNDKILEVSTFR-SDEEMAEDGSNNVFGTIEQDARRRDFTINALYY 145
Query: 130 -DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
G ++D+ L D + + I+ + +ED +R++R ++ S +
Sbjct: 146 DPMTGHLLDFNDSLQDFKKKRIRSLIPLKETFIEDPVRMIRAIKYAVSTDFSLPLSLRMA 205
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+++ S R+ E+NK+L + + + + + +
Sbjct: 206 IRSHSREL-SRASVSRLTEEVNKILASGVSARIFRKLKDYQLLGYMLPGIAPH 257
>gi|160903130|ref|YP_001568711.1| CBS domain-containing protein [Petrotoga mobilis SJ95]
gi|160360774|gb|ABX32388.1| CBS domain containing protein [Petrotoga mobilis SJ95]
Length = 885
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 74/421 (17%), Positives = 136/421 (32%), Gaps = 39/421 (9%)
Query: 15 LINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQ---------DIDIATTILPDRVMR 61
++N+L L+ ++ +VGG VRD L+ ++ + DID+ +
Sbjct: 467 ILNLLKLIGLYGNELGLNVYVVGGFVRDLLLAINSKSNGTKSIPYDIDVVVEGDGLLFGK 526
Query: 62 IFSKTRYKVIPTSISYGTIKIICRK-----KYFDITTLRSDLITDGRYAKVVFTRDWKAD 116
+K + T I R DI T R++ + V K D
Sbjct: 527 YVAKQLRAKYVEHPKFHTCSIFYRNGENKIIRIDIATARTEYYEEAGELPKVELSTIKKD 586
Query: 117 SLRRDFTINALYADQQGKVIDYVGGLNDLRNR--TIKFIGDAHHRILEDYLRILRFFRFF 174
RRDF+INA+ + + + K +ED RILR RF
Sbjct: 587 LYRRDFSINAMAIKINSGSFGILMDFFNCKKDLEEGKIRILYPLSFIEDPTRILRAIRFE 646
Query: 175 AHYGEKNIDSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
+G + + + G + ++ RI E+ K+LE P+ AI M I
Sbjct: 647 QRFGFEIEPNTLTKLEEAVENGYLEKVTGMRIREELEKILEEPQPMKAIKRMGKLKIILH 706
Query: 234 IFLDVQEIS--LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM---------- 281
+F L ++ + + F+ + + L + L +
Sbjct: 707 LFEKTYYSPTLEKDLEKLFDVREYFKANLPNYLNKVRLFHIVLCVLLQYTPEESLKKITE 766
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
+ + + KL Y Y ++
Sbjct: 767 RYGLPKDFIKNLIQVKNVFNEISIDLNDKEKTSKLSYFYEKTNGFQNEQLIFLAVKLP-- 824
Query: 342 HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401
+ + + +K +TG D++K G G ++ L K++ +N Q +
Sbjct: 825 ---EELLAKYYEYLRKIEKLKLSITGKDLLKKGY-EGVQIKTKLEEIKKKLLNGEIQPGE 880
Query: 402 E 402
E
Sbjct: 881 E 881
>gi|167537598|ref|XP_001750467.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771007|gb|EDQ84681.1| predicted protein [Monosiga brevicollis MX1]
Length = 241
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 72/136 (52%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
++ + + L + L + GGAVRD L LS +D+D+ATT P+ I
Sbjct: 6 IKQQIISNPGLCQLGQLFQAAHHDLRLAGGAVRDLLRGLSPKDLDLATTATPEESKAILL 65
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+V+ T + +GT+ + + F+ITTLR D TDGR A VV+T DW D+ RRD TI
Sbjct: 66 AAHVRVVETGLQHGTVTAVIDGEPFEITTLRIDEQTDGRRAMVVYTDDWHLDAQRRDLTI 125
Query: 125 NALYADQQGKVIDYVG 140
NA++ D + I
Sbjct: 126 NAMFMDLHDERIKEDY 141
Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 50/154 (32%), Gaps = 9/154 (5%)
Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
LR + + + R F + + + I + F +G
Sbjct: 95 LRIDEQTDGRRAMVVYTDDWHLDAQRRDLTINAMFMDLHDERIKEDYLRIMRYFRFHGRI 154
Query: 324 VMI-AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVG 382
+ L+ N + +V ++ + +++ G+P G+ +G
Sbjct: 155 ALNNEHEAAQLSAIRANAAGLEQISGERVWMELAKIL--------EMLMEVGVPKGRVMG 206
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
++ + W + F S + L + ++A +Q
Sbjct: 207 RVIQALRISWKAARFTKSADQLLEEVPAILAEAQ 240
>gi|332874016|ref|ZP_08441951.1| putative polynucleotide adenylyltransferase [Acinetobacter
baumannii 6014059]
gi|322506803|gb|ADX02257.1| pcnB [Acinetobacter baumannii 1656-2]
gi|323516672|gb|ADX91053.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter
baumannii TCDC-AB0715]
gi|332737757|gb|EGJ68649.1| putative polynucleotide adenylyltransferase [Acinetobacter
baumannii 6014059]
Length = 465
Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats.
Identities = 52/273 (19%), Positives = 115/273 (42%), Gaps = 9/273 (3%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
+ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + + +
Sbjct: 2 IDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGR---RCRIVGRRFE 58
Query: 79 TIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ ++ ++ T R+ G + + D RRDF+IN LY +
Sbjct: 59 LAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTLYYQPRK 118
Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++ D+ ++D++++T++ +GD R ED +R+LR RF A K + + ++
Sbjct: 119 GIVLDFCKAIDDVKSKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFKIDSAILDIFDVE 178
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ L+ +S R++ E KL + + + + G++K++F D++ + + +
Sbjct: 179 MTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIDFGVWKQLFADIRPDLTPFIQRAAKN 238
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
++ + +
Sbjct: 239 TDQRIQVGKTINPAFFYAVLLWQPFLERCDFYL 271
>gi|158334195|ref|YP_001515367.1| polyA polymerase [Acaryochloris marina MBIC11017]
gi|158304436|gb|ABW26053.1| polyA polymerase [Acaryochloris marina MBIC11017]
Length = 902
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 73/429 (17%), Positives = 139/429 (32%), Gaps = 56/429 (13%)
Query: 26 EDKSCIVGGAVRDSLM---NLS--VQDIDIATTILPDRVMRI----FSKTRYKVIP---- 72
+ +VGGAVRD L+ N V++ D+ + + ++T P
Sbjct: 476 GWQLYLVGGAVRDLLLSGPNQPFRVKEFDLVVDG-VETTAKAAGVSLAQTLQSDYPETQL 534
Query: 73 -TSISYGTIKIICR------KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ T +I DI T RS+ V + D RRDFTIN
Sbjct: 535 QVYGQFQTAALIWPSGSELAGFSVDIATARSEFYPYPAANPEVEASSIRQDLYRRDFTIN 594
Query: 126 ALYA---------DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
AL G+++D+ GG+ DL++R I+ + + +ED RI R RF
Sbjct: 595 ALAVRLTRQGFQSHPSGELLDFFGGVVDLQDRQIRVLHP--NSFIEDPTRIFRAVRFATR 652
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIW----------SEINKLLEAKNPLNAIVHMY 226
+ + G+ +E+ + + + A+ +
Sbjct: 653 LEFEIGEQTEAYIRHAIASGIYTQVQAEKDKAPALQSRLKNELKYIFKTSHWARALNLLA 712
Query: 227 NGGIFKEIFLDVQ--EISLDQLSQVIEAEQVFEWK----IDSLLRFIVLISWQDKKSILS 280
+ + I +Q + ++ I FE LL VL++
Sbjct: 713 DLEALQCIHPQLQINQHWWQRVRLAICWYNTFEPARLEVPVWLLILEVLLTALPPTERCV 772
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+A L + L + + + I+ L + +
Sbjct: 773 VAANLHLSDSTQQRLQNLDGVLQELEKQPEQASPSQLTDFLKSHNISGLILVGIYSNVRI 832
Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400
V + W LTG D+++ G PG++ ++L ++ +
Sbjct: 833 RKW-------VWQYLSDWSSRKPLLTGKDLIQLGYRPGREFKSMLAALGAATLDGELK-D 884
Query: 401 QEDLHHLLR 409
++ ++
Sbjct: 885 RDQAQAWVK 893
>gi|289548683|ref|YP_003473671.1| polynucleotide adenylyltransferase region [Thermocrinis albus DSM
14484]
gi|289182300|gb|ADC89544.1| Polynucleotide adenylyltransferase region [Thermocrinis albus DSM
14484]
Length = 822
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 78/393 (19%), Positives = 144/393 (36%), Gaps = 31/393 (7%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82
+ + +VGG VRD L+ V DID ++ + ++ + +GT+ +
Sbjct: 446 KELGFRCYLVGGVVRDLLLGKRVWDIDFVVEGDAIKLAQRLAQYYNVNLHPFPQFGTVHL 505
Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK----VIDY 138
+ ++ T R + VV K D LRRDFTINA+ + +IDY
Sbjct: 506 KIKDIKVELATTRRETYPHPGAYPVVEPASLKEDLLRRDFTINAMAVSVMEEDFGTLIDY 565
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198
GGL DL+ I+ + +ED +RILR RF +G K S G
Sbjct: 566 FGGLRDLKEGLIRILHPM--SFVEDPVRILRALRFAGRFGFKLSKSTEKALLHAVSGGFL 623
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ +L + I+++Y + L +S D L ++ V W
Sbjct: 624 SKAPVGRLMNELRLALREERFIEILYLYKKYGVLQHLLPDIILSQDLLDRLETLRDVVVW 683
Query: 259 KID----------SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKT 307
S L I+L+S + L + K + P + + +T
Sbjct: 684 HRMEHQQRDNVDYSWLYLILLLSHVSSDTALKILKDINAPSWVHQVYHLWRKDKKRVVQT 743
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
L + Y +A + + ++ + ++ ++ + F
Sbjct: 744 LKEAQRPSEVYRTLKGFPVAFHLLLM--TEQEVSKKILLYLDKL--RFVKVSPHEF---- 795
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400
G+ GK++G + K + ++ SF+++
Sbjct: 796 -----QGLK-GKELGEAIEREKMKIMDQSFKIN 822
>gi|197294745|ref|YP_001799286.1| Poly(A) polymerase [Candidatus Phytoplasma australiense]
gi|171854072|emb|CAM12045.1| Poly(A) polymerase [Candidatus Phytoplasma australiense]
Length = 412
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 88/405 (21%), Positives = 154/405 (38%), Gaps = 37/405 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYKVI 71
I+ + + ++ IVGGAVRD L+N+ QD+DI T +P + IF +
Sbjct: 11 KKAQKIIQIFKQKGFEAFIVGGAVRDYLLNIPFNQDVDITTNAVPQDINAIFQSQKRAY- 69
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFT-RDWKADSLRRDFTINALYA 129
YG IKII ++ F+ITT R + I + R+ + ++ K D +RRDFTINAL
Sbjct: 70 -----YGCIKIIFEEESFEITTYREEDIYLNHRHPNKIVFIQEVKKDVIRRDFTINALLM 124
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D++G++ D+ G +DL + ++ I + +D LRI+R F F A + I+ +A
Sbjct: 125 DEKGQIFDWTEGKSDLTKKILRTIQNPFISFEKDALRIMRAFYFQAKLNFQ-IEKQTQIA 183
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE------ISL 243
K L +SS RI+ + K++ + + M + + +
Sbjct: 184 LTKHSHLLTQISSSRIYEYLQKIITYPHWQASFKMMIETKAHLFLKPITKAIIFFASLKD 243
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
++ + E +F + I + + K L I L +
Sbjct: 244 EEFTNKNLEENIFWSIAFVFNKNIFSLFPINSKKKKQCQTLIILSNHIFTNLKLNLFTHQ 303
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
L +I L K+ + + + Y NL ++ + I + P
Sbjct: 304 LSNCLLAYKINYLLSPQKSKIFLIENLDNIKQTYKNLPLKNFQELKMDWRQIAPHRIP-- 361
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
I Q + E+L +
Sbjct: 362 -------------------EIKQKVIQAVLEKKITNELEELKAFV 387
>gi|42527232|ref|NP_972330.1| polyA polymerase family protein [Treponema denticola ATCC 35405]
gi|41817656|gb|AAS12241.1| polyA polymerase family protein [Treponema denticola ATCC 35405]
gi|325474278|gb|EGC77466.1| PolyA polymerase [Treponema denticola F0402]
Length = 380
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 10/226 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + I+ LN ++ IVGGAVRD L+ +D DIAT+ P ++ ++F +R
Sbjct: 35 EAVKIIQRLNSQGFEAYIVGGAVRDLLIGHVPKDFDIATSAEPSKIRKMFRNSRV----I 90
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ + I +K ++++T RS + D RRDFT+NALY D
Sbjct: 91 GRRFRLVHIFFGEKIYEVSTFRSTEDG----SIGNKFGTIDEDVHRRDFTLNALYYDPIH 146
Query: 134 K-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ VIDYV G+ D+R + I+ I ED +R++R ++ A I + K
Sbjct: 147 ELVIDYVDGVKDIRAKKIRPIIPLQLIFSEDPVRMIRAIKYAAMTD-SGIPFFLQLQIRK 205
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
L+ +S RI EINK++ + + + I + + ++ +
Sbjct: 206 NAHLLEFVSPSRITEEINKIIFSGHASDIIKKLLDFKLYVYLQPGA 251
>gi|317128267|ref|YP_004094549.1| CBS domain containing protein [Bacillus cellulosilyticus DSM 2522]
gi|315473215|gb|ADU29818.1| CBS domain containing protein [Bacillus cellulosilyticus DSM 2522]
Length = 864
Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats.
Identities = 74/408 (18%), Positives = 159/408 (38%), Gaps = 23/408 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L I ++ ++GG VRD L+ +D+DI + + +
Sbjct: 457 KLLKEIGIGAQHLNMRAYLIGGMVRDLLLQRPNEDVDIVVEGDGMKFATYLQEKFGGQVR 516
Query: 73 TSISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+ T D+T+ R++ V K D RRDFTINA+
Sbjct: 517 LHEEFKTATWKHPNNLKIDVTSARTEFYDFPAALPKVEMSTMKEDLYRRDFTINAMGIAL 576
Query: 132 QGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+IDY G NDL N+ IK + + +ED RILR RF + +D +
Sbjct: 577 HKDQFGVLIDYFQGYNDLLNKKIKIL--YNLSFIEDPTRILRAVRFECR-FQFKMDEETF 633
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--EIFLDVQEISLDQ 245
+ + +A + LS R+ +E+ K+ + +NP I ++ I +D E +
Sbjct: 634 LFAKEAVNNIPSLSKTRLSNELKKMFQEENPALIIDRLHQLNILPLIITTIDTYEAIERR 693
Query: 246 LSQVIE-----AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+ + ++ + + ++++++ + + L + +++ L ++ + F
Sbjct: 694 VQSLKHSIYELYKKEIRIEESIWIAYLIMMTSSIETNELVILERYDLNKDEIKLMKEVFY 753
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
Q ++ ++ + + + + N L +IL I
Sbjct: 754 LVEAQHHVTTESPMSDWHEIFNHTSTEAIITYYSYQANELVACALNYILAREHLIDK--- 810
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+TG+D+++ G+ P ++L+ ++ ++ L ++++ L
Sbjct: 811 ----VTGEDLIQAGLQPNTLFKSLLIEGEKLKLDMP-SLRKDEVLQKL 853
>gi|332710747|ref|ZP_08430688.1| tRNA nucleotidyltransferase/poly(A)
polymerase/CBS-domain-containing membrane protein
[Lyngbya majuscula 3L]
gi|332350524|gb|EGJ30123.1| tRNA nucleotidyltransferase/poly(A)
polymerase/CBS-domain-containing membrane protein
[Lyngbya majuscula 3L]
Length = 688
Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats.
Identities = 74/431 (17%), Positives = 143/431 (33%), Gaps = 47/431 (10%)
Query: 14 DLINIL-SLLNKGEDKSCIVGGAVRDSLM--NLSV---QDIDIATTI------------L 55
+L+ I + +VGGAVRD L+ DID+ L
Sbjct: 250 ELLTIAAEKAQERGWHLYVVGGAVRDLLLADGNKPLLLNDIDLVVDGFHRSADAIAGVTL 309
Query: 56 PDRVMRIFSKTRYKVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVF 109
+ +I+ K R S+ T ++ DI T R++ V
Sbjct: 310 AKELRKIYRKVRL---EVHGSFQTAALLWHNDPKFGSLCVDIATARTEFYPYPAANPQVE 366
Query: 110 TRDWKADSLRRDFTINALYA-------DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILE 162
+ D RRDFTINA+ A Q ++D+ GG+ DLR++ I+ + + +E
Sbjct: 367 ASSIRQDLYRRDFTINAMAARLTKVNPQAQLPLLDFFGGMLDLRSQKIRVLHA--NSFIE 424
Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS----------EINKL 212
D RI R RF G + + G+ + E+N +
Sbjct: 425 DPTRIYRAVRFAVRLGFEIEPQTREYIHYAIQSGVYERTKAENTKVPALQTRLKAELNYM 484
Query: 213 LEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW 272
L+A A+ + + G + + + + + + LR +
Sbjct: 485 LQAPYWQPALQLLSSLGALRCLHPTLTLDKPLWWRVRLVGRWLQRFDPKQTLRHW-QMRL 543
Query: 273 QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
+ + L+ ++ + + ++ + S + +++ +
Sbjct: 544 EVLIADLAPDERVKVAKNLQLPVDSVERLQKLEGWQGDFLESLPTCQLNSQIVHMLREYK 603
Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392
L + ++ + W+ PL G+D+ K G PG IL +
Sbjct: 604 LPTLVLIGVYSPRAIRRKIWQYLTTWRNVKAPLDGNDLRKLGYKPGAHYREILDALLEAT 663
Query: 393 INSSFQLSQED 403
++ Q +
Sbjct: 664 LDRVIQDQADA 674
>gi|281356198|ref|ZP_06242691.1| poly(A) polymerase [Victivallis vadensis ATCC BAA-548]
gi|281317567|gb|EFB01588.1| poly(A) polymerase [Victivallis vadensis ATCC BAA-548]
Length = 412
Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats.
Identities = 58/247 (23%), Positives = 114/247 (46%), Gaps = 19/247 (7%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +I+++S L ++ IVGGA+RD L+ + +D DI+T+ P+ V +F + ++I
Sbjct: 8 ANHVISLISELQNAGFEAYIVGGAIRDLLLGRTPKDYDISTSATPEEVRGVFGRRIARII 67
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL-----ITDGRYAKVVFTR---------DWKADS 117
+ + + + F+++T R DGR AK + + D+
Sbjct: 68 --GKRFRLVHVQYGGELFEVSTFRKAPTQGQLRPDGRPAKDLPEHMILSDNEFGSAEEDA 125
Query: 118 LRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
RRDFT+NAL+ D + G+ D+R ++ IG+ R ED +R+LR +
Sbjct: 126 WRRDFTVNALFYDPVRSELIDYTGQGIGDIRAGIVRAIGNPKLRFEEDPVRMLRALKLVG 185
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
Y +D A + + ++ + R+ E+ K+L + I+ ++ G+
Sbjct: 186 QYDF-ALDCATENALFNSLELIRHAAPSRLSLELEKILSSSYGDKHILAFHDYGLLAYYL 244
Query: 236 LDVQEIS 242
+++E
Sbjct: 245 PELEEAW 251
>gi|325971159|ref|YP_004247350.1| poly(A) polymerase [Spirochaeta sp. Buddy]
gi|324026397|gb|ADY13156.1| poly(A) polymerase [Spirochaeta sp. Buddy]
Length = 422
Score = 123 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 53/231 (22%), Positives = 102/231 (44%), Gaps = 8/231 (3%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D D + + L ++ +VGGAVRD ++ +D DIAT+ P ++ R+F R
Sbjct: 31 LLDKDALWAIKKLQASGAEAYLVGGAVRDMMLGTIPKDFDIATSASPRQIQRLFWNARI- 89
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ + K +++T RS V + D D+ RRDF+IN+ Y
Sbjct: 90 ---IGKRFKLVHLVFKDKVLEVSTFRSGEEAMDGNNNVFGSIDQ--DAKRRDFSINSFYY 144
Query: 130 DQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D +++D+ + D + + I I D ED +R++R ++ G ++ +
Sbjct: 145 DPSTGQLLDFNHAMEDFKKKKISSIIDLDESFKEDPVRMVRAIKYSVSTGF-SLRWSVKM 203
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
A K L +S+ R+ E+NK+L + + + + +
Sbjct: 204 AIRKYSNELSRVSTSRLTEEVNKILASGHSCEIFNELKRYKLLVFMLPAFS 254
>gi|298531108|ref|ZP_07018509.1| Polynucleotide adenylyltransferase region [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509131|gb|EFI33036.1| Polynucleotide adenylyltransferase region [Desulfonatronospira
thiodismutans ASO3-1]
Length = 482
Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 87/464 (18%), Positives = 159/464 (34%), Gaps = 59/464 (12%)
Query: 1 MVSIVQHKWFHDS-DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59
+ S+ H + D+I I+ L + +VGGAVRD L+ V+D+D+A+ + + +
Sbjct: 24 LSSLPDHPEIAAALDVIRIMKTL---GFTALMVGGAVRDILLERPVRDVDLASDMPLESL 80
Query: 60 MRIFSKTRYKVIPTSIS--YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--WKA 115
+ F + T S + T+ I+ + ++ + T R+ T+ +
Sbjct: 81 RKHF-----RAFETGRSRLFHTLCIVHQGQHLETTLFRTKHSLPAERPDQEDTKHSLFLQ 135
Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
D+ RDFTINA+ D+Q ++D G DL I+ + + RI ED LR+LR R
Sbjct: 136 DARHRDFTINAMALDEQLDLLDPFHGKKDLDRGLIRAVENPRERITEDPLRMLRAARLAC 195
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI-NKLLEAKNPLNAIVHMYNGGIFKEI 234
+ + L S A+ + + L I + G+ +
Sbjct: 196 ELDFEIEEKTALSISGLARDISDVAPERLGREILKMASLSGPRFARGIRLLDRLGLLPVV 255
Query: 235 FLDVQEISLDQLSQVIEAE-QVFEWKIDSLLRFIVLISWQDK------------------ 275
+V + E VF + ++ + +
Sbjct: 256 LPEVDALKGLYHDPRHHPEGDVFIHTLRAIQCNDLAHDSLNMALLAHDLGKTDIAARHPG 315
Query: 276 ------------KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
I M ++ LP I + + + L K+ +
Sbjct: 316 TGFYRGHDRAAEYIIRQMGQRLRLPGRITRAMQAVAANHMRMHGLDEMRPSKILEMVEHP 375
Query: 324 VMIAKLKIFLALHYNNLTHQDT----------CFILQVLSDIIHWKKPLFPLTGDDVV-K 372
+ + H I +L++ +P+ +TG+ V+
Sbjct: 376 HWALLARASVCDHAARGKEHGKLQQKKIALALKKIRPLLNEATGKTRPV--ITGNQVMQA 433
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
GIPPG VG I+ ++ Q Q + R L Q
Sbjct: 434 AGIPPGPMVGRIIRETTAWARDNGIQ-DQNLILDYARNLAQELQ 476
>gi|300865343|ref|ZP_07110154.1| polynucleotide adenylyltransferase region [Oscillatoria sp. PCC
6506]
gi|300336646|emb|CBN55304.1| polynucleotide adenylyltransferase region [Oscillatoria sp. PCC
6506]
Length = 418
Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 74/417 (17%), Positives = 146/417 (35%), Gaps = 44/417 (10%)
Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSK-TRYKVIPTSISYG 78
L + + +VGGAVRD+L+ + D+D + R + + +
Sbjct: 18 LKELPGPAYLVGGAVRDALLGRVSEYLDLDFVMLAPAVKTARKIANLYQAGFVLLDAERQ 77
Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVID 137
+++ D + +AD RRDF +NA+ + ++ID
Sbjct: 78 IARVVFEGATADFAQA--------------EGGNLEADLGRRDFRLNAIAYNPFTGEIID 123
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
V G DL+ R I+ + A+ R +D LR+LR +R A I + + L
Sbjct: 124 PVDGQADLQARIIRMVSPANLR--DDPLRLLRAYRQAAQLDF-AIAPETHATIRELAPLL 180
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ--------- 248
++ ER+ SE+ LL + I + + F + D+L++
Sbjct: 181 SQVAVERVRSELGYLLNNPQGIPWICRAWEDNLISVWFPSAGDR-FDRLARINTAVITLA 239
Query: 249 ---------VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ + + + + + D +IS
Sbjct: 240 PVWPNLAVELSQWVRDTIKTPLLAIAKLACLVNPDPVVAEVELMTLKYSNAEIKGVISLL 299
Query: 300 NCNFNQKTLSIPE--IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
K SI E +++ ++L+ D + AL I + L
Sbjct: 300 KYLPKLKENSIYELSLREQYFLFRDLGNVFPALAIFALAAEVPFDVILVLIHRYLDAEDR 359
Query: 358 WKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
P ++G+D++ ++ +P +G +L+ + + +E L L KL++
Sbjct: 360 VAHPTQLVSGNDLMAEFNLPRSPLIGQLLLEIQLARVEGRISTREEAL-ELAAKLVS 415
>gi|217967879|ref|YP_002353385.1| hypothetical protein [Dictyoglomus turgidum DSM 6724]
gi|217336978|gb|ACK42771.1| CBS domain containing protein [Dictyoglomus turgidum DSM 6724]
Length = 845
Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 77/420 (18%), Positives = 142/420 (33%), Gaps = 27/420 (6%)
Query: 5 VQHKWFHDSDLINILSLLN----KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
+ + S IL L + +GG VRD L+ S D+DI V+
Sbjct: 444 ISEEKIKSSPWKEILEELKNLTSQYNISIYAIGGFVRDLLLGQSNYDLDIVVEGDIQLVI 503
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ T +GT +I+ + DI T R + + V D R
Sbjct: 504 SKIIDKWQSKVITHPQFGTSEILLNDRKRIDIATARIEYYEEPGSLPKVERSSLWLDLKR 563
Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHY 177
RDFTINAL + + L + + +ED RILR R
Sbjct: 564 RDFTINALAMSLNEENFGEIIDLYGGLEDLTRKELRVLHNLSFIEDPTRILRGVRLEVRL 623
Query: 178 GEKNIDSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
G + + + G ++ ER+ EI +L+ P + + I
Sbjct: 624 GFNFEEKTFKLLKEAIENGFLNKIAKERLKDEIFLILQEPQPEKVLKRLEELNALSYILP 683
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ +L + E + + + +++ + K + + L
Sbjct: 684 ------VKRLPKNFEKKNQILRREFPEKLELHILNIISEADTEEGKKWLQDLKFPKKVLY 737
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
F + T ++ E + L +LT + +L +
Sbjct: 738 QFILLKKYENTNTLSE---------KDIKSLLDLPNDLLLLLSLTAKKIGK--NILRIKL 786
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+K + L G+D++ G GK +G++L + + S+ED ++++ I S+Q
Sbjct: 787 LKEKGVPYLKGEDLINMGFK-GKIIGDLLKKLFLKHYYGEVK-SKEDEEKIIKEFINSTQ 844
>gi|149196126|ref|ZP_01873182.1| RNA-poly(A) polymerase [Lentisphaera araneosa HTCC2155]
gi|149140973|gb|EDM29370.1| RNA-poly(A) polymerase [Lentisphaera araneosa HTCC2155]
Length = 412
Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 15/242 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + I+S L + ++ +VGGAVRD L+ + +D DI+T+ P++V F K + ++I
Sbjct: 11 DRGAVQIISRLREAGHETYLVGGAVRDLLVGENPKDFDISTSATPEQVSAFFGKRKARII 70
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV----------VFTRDWKADSLRRD 121
+ + + R +++ T R R A+ + D+ RRD
Sbjct: 71 --GRRFKIVHVYERGTLYEVATFRRTPNEKERSARPSDDGEIVWRDNVWGSPEEDANRRD 128
Query: 122 FTINALYADQ--QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
FT+NAL+ D + K+IDY GG+ D+ ++ ++ +GD R ED +R+LR + A YG
Sbjct: 129 FTVNALFLDPTDKNKIIDYCGGVADIEDKKVRSLGDPMIRFTEDPVRMLRAVKLKAQYGF 188
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ D A + + ++S R++ EI K+ + + G+ + I ++
Sbjct: 189 -EFEDDVEKAIRELALKITLVSQRRLYEEILKITYKPYMAKTMEACHEAGLLEHIIPNIS 247
Query: 240 EI 241
+I
Sbjct: 248 DI 249
>gi|50086075|ref|YP_047585.1| poly(A) polymerase I (PAP) [Acinetobacter sp. ADP1]
gi|49532051|emb|CAG69763.1| poly(A) polymerase I (PAP) [Acinetobacter sp. ADP1]
Length = 485
Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 54/246 (21%), Positives = 111/246 (45%), Gaps = 9/246 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+++++ LNK ++ IVGG VRD ++ L+ +D D T P +V +F + +
Sbjct: 20 ILDVIDSLNKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPAQVKEVFGRRCRIIG--- 76
Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ ++ T R+ G + + D RRDF+IN LY
Sbjct: 77 RRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTLYY 136
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ ++ D+ ++D++ RT++ +GD R ED +R+LR RF A +
Sbjct: 137 QPRKGIVLDFCDAVSDVKKRTLRLLGDPAQRFEEDPVRMLRALRFAAKLNFDIDPEILKI 196
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
++ + L+ +S R++ E KL + + + I++++F DV+ + +
Sbjct: 197 FDVEMTQLLRDVSPHRLYDESQKLFTMGHLSRVLPMLIEFDIWRQLFADVKAEITPFIER 256
Query: 249 VIEAEQ 254
+
Sbjct: 257 AAKNTD 262
>gi|262374923|ref|ZP_06068157.1| poly(A) polymerase I [Acinetobacter lwoffii SH145]
gi|262309936|gb|EEY91065.1| poly(A) polymerase I [Acinetobacter lwoffii SH145]
Length = 487
Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats.
Identities = 54/278 (19%), Positives = 121/278 (43%), Gaps = 9/278 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+++++ LNK ++ IVGG VRD ++ L+ +D D T P +V +F + +
Sbjct: 17 ILDVIDALNKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPAQVKEVFGRRCRIIG--- 73
Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ + ++ ++ T R+ G + + D RRDF+INA+Y
Sbjct: 74 RRFELAHVYSGRELVEVATFRAPPKKAVTSAAGMILRDNNWGSIEQDFARRDFSINAMYY 133
Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ ++ D+ ++D+ ++T++ +GD R ED +R+LR RF A ++ V
Sbjct: 134 QPRKGIVLDFCNAVDDIHSKTLRLLGDPALRFEEDPVRMLRTLRFAAKLNFNIDEAILDV 193
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ + + L+ +S R++ E KL + + + + GI++++F D++ + +
Sbjct: 194 FTPEMTQLLRDVSPHRLYDESQKLFTMGHLNRVLPMLIDFGIWQQLFADIKPEITPFMER 253
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286
+ ++ + + +
Sbjct: 254 AAKNTDQRISIGKTINPAFFYAVLLWQPFLERCEFYLN 291
>gi|301155973|emb|CBW15443.1| poly(A) polymerase I [Haemophilus parainfluenzae T3T1]
Length = 419
Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats.
Identities = 73/354 (20%), Positives = 137/354 (38%), Gaps = 30/354 (8%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I ++ L + + IVGG +RD L+ +D D+AT PD++ +F +
Sbjct: 1 MFSRNAITVVEKLQRQGYDAYIVGGCLRDLLLGKHPKDFDVATNARPDQIQAVFQRQ--- 57
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----------WKADSL 118
+ I+ + ++ T R+ + + + + D+
Sbjct: 58 CRLVGRRFRLAHIMFGRDVIEVATFRASHSDARSENQAKQSDEGMLLRDNVYGTIEQDAE 117
Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFT+NALY + Q + DY G++DL+N ++ IGD R ED +R+LR RF A
Sbjct: 118 RRDFTVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRMLRSVRFMAKL 177
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
++ + LK + R++ E KLL++ N + + G+F+++F
Sbjct: 178 DMF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQSGNGVKTYKLLRQYGLFEQLFPS 236
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
+ F K DSL ++L S ++ + + F
Sbjct: 237 LTP--------------YFTEKEDSLAERMILTSLNSTDERIADKLRINPAFLFAAFFWY 282
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ Y ++ +L LA + + ++LQ+
Sbjct: 283 PLREKVDVLKNEGGLNNHDAYALAANEVLDQLCRSLAAPRRHTSVIRDIWMLQL 336
>gi|77920691|ref|YP_358506.1| poly(A) polymerase [Pelobacter carbinolicus DSM 2380]
gi|77546774|gb|ABA90336.1| poly(A) polymerase [Pelobacter carbinolicus DSM 2380]
Length = 442
Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats.
Identities = 57/222 (25%), Positives = 89/222 (40%), Gaps = 15/222 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L K+ +VGG VRD L+N +D D+AT P +V ++F
Sbjct: 41 NEHSLKVLYRLRNHGFKAYLVGGGVRDLLLNRRPKDFDVATDATPSQVKKLFRNC----F 96
Query: 72 PTSISYGTIKIIC-RKKYFDITTLRSDLIT--------DGRYAKVVFTRDWKADSLRRDF 122
+ I ++ T R + + + D+ RRDF
Sbjct: 97 LVGRRFRLAHIRFAENYVVEVATFRRQPRPEELPDDPAEHFFFTENVFGTPREDAFRRDF 156
Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
+IN L+ + VID+VGGL DL R ++ IGD R ED +R+LR F A G +
Sbjct: 157 SINGLFYNIDDFSVIDHVGGLQDLEARRLRVIGDPLVRFTEDPVRMLRALEFAARLGF-S 215
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223
+D A + + RI E+ +L
Sbjct: 216 LDEGIREAIYLRGPLIAEAAPARIREEVMELFRHAVAGPVFR 257
>gi|91789415|ref|YP_550367.1| poly(A) polymerase [Polaromonas sp. JS666]
gi|91698640|gb|ABE45469.1| poly(A) polymerase [Polaromonas sp. JS666]
Length = 550
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 64/323 (19%), Positives = 127/323 (39%), Gaps = 46/323 (14%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D ++++ L + ++ +VGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 46 PKLVDDRAMDVVRTLKQAGFEAYVVGGAVRDLLVGLRPKDFDVATDATPEQVKSLFRRAF 105
Query: 68 YKVIPTSISYGTIKIICR----KKYFDITTLR--------------------------SD 97
+ + +I + +++ R
Sbjct: 106 I----IGRRFRIVHVIYGRGREHEVIEVSIFRAHLDSSLAEQVGGNERTSKSELAGMKHA 161
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDA 156
+ + GR + + D+ RRDFTINA+Y D + ++ +DY G+ D + + I+ IG+
Sbjct: 162 VDSSGRVLRDNVWGPLEEDAARRDFTINAMYYDPETQIVVDYHNGIRDAKKKIIRMIGNP 221
Query: 157 HHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214
R ED +RI+R RF A + + L + R++ E+ KLL+
Sbjct: 222 AVRYREDPVRIIRAVRFGAKLSALGFKFEDKTSAPLREMSSLLADVPQSRLFDEMLKLLQ 281
Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQ---EISLDQLSQVIEAE------QVFEWKIDSLLR 265
+ L ++ + G+ I+ + E + + + + + LL
Sbjct: 282 TGHSLASVEQLKTLGLGTGIYPLLDVVVEAAHEPFLNLALKDTDRRVGEGKPVAPSFLLS 341
Query: 266 FIVLISWQDKKSILSMAKKFSLP 288
I+ +D + + +P
Sbjct: 342 CILWSDVRDGWARRRKRGEHLMP 364
>gi|89901286|ref|YP_523757.1| poly(A) polymerase [Rhodoferax ferrireducens T118]
gi|89346023|gb|ABD70226.1| poly(A) polymerase [Rhodoferax ferrireducens T118]
Length = 535
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 63/265 (23%), Positives = 121/265 (45%), Gaps = 37/265 (13%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
D +N++ L ++ +VGGAVRD ++ L+ +D D+AT P++V +F +
Sbjct: 37 PKLVDERALNVVRTLKNAGFEAYVVGGAVRDLMVGLAPKDFDVATNATPEQVKGLFRRAF 96
Query: 68 YKVIPTSISYGTIKIICR----KKYFDITTLRSDLIT----------------------- 100
+ + ++ + +++T R+ +
Sbjct: 97 I----IGRRFRIVHVVYGRGREHEVIEVSTFRAYMDNAAAEQVAGNEKTSKSELAGMKHA 152
Query: 101 ---DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDA 156
GR + + D++RRDFTINA+Y D + ++ +DY G+ D ++R I+ IGD
Sbjct: 153 VDSSGRVLRDNVWGPQEEDAVRRDFTINAMYYDPETQIVVDYHHGIKDSKDRVIRMIGDP 212
Query: 157 HHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214
R ED +RI+R RF A +++ IK+++ L + R++ E+ KLL+
Sbjct: 213 ATRYREDPVRIIRAVRFAAKLSGLGFKLEAKTAAPLIKSQELLAEVPQSRLFDEMLKLLQ 272
Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ L +I + G+ + I+ +
Sbjct: 273 TGHALASIEQLKALGMARGIYPLLD 297
>gi|326928160|ref|XP_003210249.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial-like
[Meleagris gallopavo]
Length = 385
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 101/336 (30%), Positives = 179/336 (53%), Gaps = 13/336 (3%)
Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136
+ ++ F+ITTLR D++TDGR+A+V FT DW+ D+ RRD TIN+++ G +
Sbjct: 60 FRLGTSKLHEQNFEITTLRIDVVTDGRHAEVEFTTDWEKDAERRDLTINSMFLGLDGMLY 119
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASIKAK 194
D+ G DL+++ I+F+G A RI EDYLRILR+FRF+ EK + +S L A +
Sbjct: 120 DFFNGYEDLKSKKIRFVGKATARIQEDYLRILRYFRFYGRIAEKPGDHESSTLQAIKENA 179
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
KGL +S ERIW E+ K+L K+ + + +Y+ + + I L V +LD+L +V + +
Sbjct: 180 KGLAGISGERIWVELKKILIGKHVNHLVRLLYDLDVAQYIGLPV-NGNLDELDRVSKNTE 238
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
K ++L + + + ++ + + +E + ++ L+
Sbjct: 239 NLCPKPMTVLTSLFKVKDD----VTNLDLRLKISKEEKNLGFFLLKH---REELTKATGP 291
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374
+ Y D +M ++ ++ L +Q Q+L ++ W P FP++G D+ K G
Sbjct: 292 EPLKPYQDFIMDSREANTISKILELLKYQGEE---QLLKEMQQWTVPTFPVSGHDLRKMG 348
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
I GK++G+ L ++EW S + + +E+L ++K
Sbjct: 349 ITCGKEIGSALQQLREEWKKSGYCMDKEELLSCMKK 384
>gi|145629073|ref|ZP_01784872.1| polyA polymerase [Haemophilus influenzae 22.1-21]
gi|144978576|gb|EDJ88299.1| polyA polymerase [Haemophilus influenzae 22.1-21]
Length = 292
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 89 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 145
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D+ R
Sbjct: 146 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 205
Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A
Sbjct: 206 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 265
Query: 179 EK 180
Sbjct: 266 MF 267
>gi|293610397|ref|ZP_06692698.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827629|gb|EFF85993.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 487
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/279 (19%), Positives = 117/279 (41%), Gaps = 9/279 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S +++++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + +
Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGRRCRIIG- 76
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ ++ T R+ G + + D RRDF+IN L
Sbjct: 77 --RRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134
Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y + ++ D+ ++D++N+T++ +GD R ED +R+LR RF A K
Sbjct: 135 YYQPRKSIVLDFCKAIDDVKNKTLRLLGDPAQRFEEDPVRMLRTLRFAAKLNFKIDSDIL 194
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + + L+ +S R++ E KL + + + G++K++F D+Q +
Sbjct: 195 DIFDAEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIEFGVWKQLFADIQPNLTPFI 254
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + ++ + +
Sbjct: 255 LRAAKNTDQRIQVGKTINPAFFYAVLLWQPFLERCEFYL 293
>gi|183220775|ref|YP_001838771.1| Poly(A) polymerase [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
gi|167779197|gb|ABZ97495.1| Poly(A) polymerase (PAP; Plasmid copy number protein) [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 497
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 15/239 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D D I I++ LNK K+ +VGG VRD LM +D DI T+ P+++ R+F+ R
Sbjct: 46 DEDAIKIINRLNKFRYKAYLVGGGVRDLLMGKRPKDFDIVTSATPNQIKRVFNNCRI--- 102
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL---------RRDF 122
+ + II + K +++T RS K K D+ RRDF
Sbjct: 103 -IGKRFKIVHIIFKGKIIEVSTFRSLPEHRLEKHKAENDYLIKRDNSFGTAKEDAARRDF 161
Query: 123 TINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
TIN+L+ + ++DYVGG D++ + ++ IGD ED +R+LR +F G +
Sbjct: 162 TINSLFYDPKNDSILDYVGGFEDIQKKIVRVIGDPDISFKEDPVRMLRAVKFSVLLG-LD 220
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
I+ +A K + L+ S+ R+ E NK+ + + ++ + +
Sbjct: 221 IEKKTKLAIKKNRLELEKSSTARLLEEYNKMFRTWKTSIIFEGLAENHLLDVLYKEPTD 279
>gi|328948217|ref|YP_004365554.1| poly(A) polymerase [Treponema succinifaciens DSM 2489]
gi|328448541|gb|AEB14257.1| poly(A) polymerase [Treponema succinifaciens DSM 2489]
Length = 374
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 69/287 (24%), Positives = 119/287 (41%), Gaps = 17/287 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D D I I+ L K S IVGGAVRD + + +D DI T P R+ +IF +R
Sbjct: 33 DPDAIFIIDCLKKNGFDSYIVGGAVRDLIGGRTPKDFDIVTDATPSRIKKIFRNSRI--- 89
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+ + + K F+++T RS + A D LRRDFT+NALY D
Sbjct: 90 -IGKRFRLVHVFFGTKIFEVSTFRSIIDGSIGNA----FGSMDEDVLRRDFTLNALYYDP 144
Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ ++IDYVGG+ D++ +K + +ED +R++R ++ A G +
Sbjct: 145 LKQQIIDYVGGVEDIKKGIVKPVIPIDRIFIEDPVRMIRAVKYGATTGC-KLSHKLKKKI 203
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ----- 245
+ L +S R+ E K++ + + +++ + + L+
Sbjct: 204 RISAPLLSPVSPSRLTEEFLKIINGGHSFEIVNAALETDLYEYLQPAASNLILENKKFAK 263
Query: 246 --LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
L + + + + DS L + +D L+ K
Sbjct: 264 SYLENLKKLDDFVKQNQDSRLGERLYFLLKDFVEQLTDWKLEIQSEY 310
>gi|189910875|ref|YP_001962430.1| tRNA nucleotidyltransferase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167775551|gb|ABZ93852.1| tRNA nucleotidyltransferase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
Length = 492
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 15/239 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D D I I++ LNK K+ +VGG VRD LM +D DI T+ P+++ R+F+ R
Sbjct: 41 DEDAIKIINRLNKFRYKAYLVGGGVRDLLMGKRPKDFDIVTSATPNQIKRVFNNCRI--- 97
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL---------RRDF 122
+ + II + K +++T RS K K D+ RRDF
Sbjct: 98 -IGKRFKIVHIIFKGKIIEVSTFRSLPEHRLEKHKAENDYLIKRDNSFGTAKEDAARRDF 156
Query: 123 TINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
TIN+L+ + ++DYVGG D++ + ++ IGD ED +R+LR +F G +
Sbjct: 157 TINSLFYDPKNDSILDYVGGFEDIQKKIVRVIGDPDISFKEDPVRMLRAVKFSVLLG-LD 215
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
I+ +A K + L+ S+ R+ E NK+ + + ++ + +
Sbjct: 216 IEKKTKLAIKKNRLELEKSSTARLLEEYNKMFRTWKTSIIFEGLAENHLLDVLYKEPTD 274
>gi|76154248|gb|AAX25739.2| SJCHGC09232 protein [Schistosoma japonicum]
Length = 217
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67
+ + I + + K I GGAVRD L+ +S DID AT P ++ +FSK
Sbjct: 57 PELYTEENITVHKIFKKYGFNLRIAGGAVRDILLGVSPHDIDFATDATPSQMCEMFSKEG 116
Query: 68 YKVIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+++ S+GT+ K+ F++TTLR D++TDGR+++V+FT DWK D+ RRD T+N
Sbjct: 117 IRMLNRNGESHGTVTARINDKENFEVTTLRIDVVTDGRHSEVIFTNDWKLDAERRDLTVN 176
Query: 126 ALYADQQGKVI 136
+++ +
Sbjct: 177 SMFLSVDMHEL 187
>gi|264679761|ref|YP_003279670.1| poly(A) polymerase [Comamonas testosteroni CNB-2]
gi|262210276|gb|ACY34374.1| poly(A) polymerase [Comamonas testosteroni CNB-2]
Length = 521
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 61/263 (23%), Positives = 117/263 (44%), Gaps = 37/263 (14%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D I+++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 41 LVDRRAIDVVQTLKRSGYEAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKNLFRRAFI- 99
Query: 70 VIPTSISYGTIKIICR----KKYFDITTLR--------------------------SDLI 99
+ + ++ + +++T R +
Sbjct: 100 ---IGKRFRIVHVVYGRGRENEVIEVSTFRAFLDNSAAEQVSGNERTSKNQLAGLKHAVD 156
Query: 100 TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHH 158
GR + D+ RRDFTINA+Y D + ++ +DY GG+ D + + ++ IGD
Sbjct: 157 ASGRVLRDNVWGPQDQDATRRDFTINAMYYDPETQIVVDYHGGIADAKKKVLRMIGDPAT 216
Query: 159 RILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R ED +RI+R RF A +++ ++ + L+ + R++ E+ KLL+
Sbjct: 217 RYREDPVRIIRAVRFAAKLSGKGFKLEAKTAKPLVECEPLLQEVPQSRLFDEMLKLLQTG 276
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ 239
+ L ++ + G+ + I+ +
Sbjct: 277 HALASVAQLKELGLSRGIYPLLD 299
>gi|260551951|ref|ZP_05825813.1| poly(A) polymerase I [Acinetobacter sp. RUH2624]
gi|260405354|gb|EEW98849.1| poly(A) polymerase I [Acinetobacter sp. RUH2624]
Length = 487
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 54/279 (19%), Positives = 119/279 (42%), Gaps = 9/279 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S +++++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + +
Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGRRCRIIG- 76
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ ++ T R+ G + + D RRDF+IN L
Sbjct: 77 --RRFELAHVYSGRELIEVATFRAPPKKAVTNASGMILRDNNWGTIEQDFARRDFSINTL 134
Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y + ++ D+ ++D++N+T++ +GD R ED +R+LR RF A K +
Sbjct: 135 YYQPRKGIVLDFCKAIDDVKNKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFKIDPAIL 194
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ ++ + L+ +S R++ E KL + + + G++K++F D++ +
Sbjct: 195 DIFDVEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIEFGVWKQLFADIRPDLTPFI 254
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + ++ + +
Sbjct: 255 QRAAKNTDQRIQIGKTINPAFFYAVLLWQPFLERCDFYL 293
>gi|299533945|ref|ZP_07047306.1| poly(A) polymerase [Comamonas testosteroni S44]
gi|298718072|gb|EFI59068.1| poly(A) polymerase [Comamonas testosteroni S44]
Length = 521
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 61/263 (23%), Positives = 117/263 (44%), Gaps = 37/263 (14%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D I+++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 41 LVDRRAIDVVQTLKRSGYEAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKNLFRRAFI- 99
Query: 70 VIPTSISYGTIKIICR----KKYFDITTLR--------------------------SDLI 99
+ + ++ + +++T R +
Sbjct: 100 ---IGKRFRIVHVVYGRGRENEVIEVSTFRAFLDNSAAEQVSGNERTSKNQLAGLKHAVD 156
Query: 100 TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHH 158
GR + D+ RRDFTINA+Y D + ++ +DY GG+ D + + ++ IGD
Sbjct: 157 ASGRVLRDNVWGPQDQDATRRDFTINAMYYDPETQIVVDYHGGIADAKKKVLRMIGDPAT 216
Query: 159 RILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R ED +RI+R RF A +++ ++ + L+ + R++ E+ KLL+
Sbjct: 217 RYREDPVRIIRAVRFAAKLSGKGFKLEAKTAKPLVECEPLLQEVPQSRLFDEMLKLLQTG 276
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ 239
+ L ++ + G+ + I+ +
Sbjct: 277 HALASVAQLKELGLSRGIYPLLD 299
>gi|119484726|ref|ZP_01619208.1| polyA polymerase [Lyngbya sp. PCC 8106]
gi|119457544|gb|EAW38668.1| polyA polymerase [Lyngbya sp. PCC 8106]
Length = 418
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 68/408 (16%), Positives = 142/408 (34%), Gaps = 43/408 (10%)
Query: 29 SCIVGGAVRDSLMNLSVQ--DIDIATTILPDRVMR-IFSKTRYKVIPTSISYGTIKIICR 85
+ +VGGAVRD L+ D+D + I + + +++
Sbjct: 25 AYLVGGAVRDGLLGRKADYLDLDFVLLGQAIHTAQNIAKYYKAGFVLLDAERQIARVVFP 84
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYVGGLND 144
D +++ D RRDFT+NA+ + ++ID G D
Sbjct: 85 GATVDFAQAQAN--------------SLAQDLQRRDFTLNAIAYNPFTQELIDPHKGQTD 130
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
++NR I+ I + R +D LR+LR +R A ++ + L ++ ER
Sbjct: 131 IQNRLIRMISAQNLR--DDPLRLLRGYRQAAQL-RFQLEPQTQATIRELAPFLSQVAVER 187
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL- 263
+ +E+ LL + I + + F E D+L ++ A + +L
Sbjct: 188 VQTELGYLLNTAIGVVWIKQAWEDHLLSGFFPSASE-QFDRLLKMDSAVETLHQHSPTLT 246
Query: 264 -----------------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN--CNFN 304
+ + + D + + I+
Sbjct: 247 PTLSHPLRNTIKTSQLAIAKLTCLLTPDPTVAEVELTQLKYSKAEIRSAIAIVKGLGRLQ 306
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
Q S +++ ++L+ + + LA+ + I + L+ P
Sbjct: 307 QTPPSQMSLRQQYFLFQEVGTLFPALAVLAVASGVSAMNLSPLIARYLNPDDPVAHPQVL 366
Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+TG++++K + P K+G +L+ + + ++ L + + L
Sbjct: 367 VTGNELMKTLNLSPSPKIGQLLMKIQLAQVEGQILTREQALRWVAQSL 414
>gi|330999362|ref|ZP_08323079.1| poly(A) polymerase [Parasutterella excrementihominis YIT 11859]
gi|329575220|gb|EGG56771.1| poly(A) polymerase [Parasutterella excrementihominis YIT 11859]
Length = 479
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 100/232 (43%), Gaps = 12/232 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I++ L K+ IVGGAVRD L+ +D D+AT P+ V ++ + I
Sbjct: 36 SPFAISVCQKLQDAGYKAFIVGGAVRDLLIGAKPKDFDVATDATPEEVKKVTRRA----I 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + + + ++ T R DG + D+ RRDFT+N
Sbjct: 92 IIGRRFRLVHVNKGAETIEVATFRGFAKQGVTKDEDGVITNDNVFGEQYEDAARRDFTVN 151
Query: 126 ALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+Y G + DY GL+D+R R I+ IGD R ED +RILR R A G ID
Sbjct: 152 AMYFDPISGDLYDYHHGLDDIRERKIRMIGDPATRYREDPVRILRAIRIAAKLGF-TIDE 210
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ L + S R+ E +K++ + + + + M I I L
Sbjct: 211 KTAAPMHYMQTLLLSVPSARLADEFSKMVLSGSAVACMELMNRYDINIPIPL 262
>gi|217031986|ref|ZP_03437487.1| hypothetical protein HPB128_187g13 [Helicobacter pylori B128]
gi|216946296|gb|EEC24902.1| hypothetical protein HPB128_187g13 [Helicobacter pylori B128]
Length = 264
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 2/173 (1%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
+ + L + + K + +VGG VRD LM ++ +D D+ + L + + K +
Sbjct: 2 FELEKGLKELFDIYEKSPHELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSLRRDFTINA 126
+V+ T I +GTI + + ++ITT R + F+ D RRDF++NA
Sbjct: 62 RVLETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNA 121
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
+ +ID G + + N+ I+ +G A R ED LRILR RF A G
Sbjct: 122 IAYSPTKGLIDPFKGRSAIENQMIECVGGARLRFFEDALRILRALRFSATLGF 174
>gi|283457076|ref|YP_003361640.1| PcnA tRNA nucleotidyltransferase [Bifidobacterium dentium Bd1]
gi|283103710|gb|ADB10816.1| PcnA tRNA nucleotidyltransferase [Bifidobacterium dentium Bd1]
Length = 441
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 80/424 (18%), Positives = 145/424 (34%), Gaps = 66/424 (15%)
Query: 37 RDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVIPTSISYGTIKIICRKK-----YFD 90
RD L++ D+D T+ P++ I + +GT+ + R++ +
Sbjct: 2 RDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFWDMGRKFGTLGAMRRREDGIEVKVE 61
Query: 91 ITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNR 148
+TT RSD R +V + + D RRDFT+NA+ + +D GG NDL
Sbjct: 62 VTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPDLEFVDPFGGANDLVKG 121
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208
++ + +D LR++R RF A G I+ + A + + I+S+ER+ E
Sbjct: 122 VLRTPVNPRQSFDDDPLRMMRAVRFVAQLGF-RIEPETAEALSDMVERIDIVSAERVRDE 180
Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK--------- 259
+ KLL + P I + + G+ +F ++ + L+ + + + VFE
Sbjct: 181 LTKLLLSDRPRAGIEALVDSGLADIVFPEIPALQLE-IDEHHRHKDVFEHTMIVVDRAVA 239
Query: 260 -----------IDSLLRFIVLISWQDKK----------------------SILSMAKKFS 286
D LR L+ K K
Sbjct: 240 LETGPDGPVPAPDLTLRLAALMHDIGKPKTRRFEPGGKVSFHHHDAVGAKMTRKRLKALR 299
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346
+ + N + K + L + T Q+
Sbjct: 300 FDHHMIEDVSELVNLHLRFHGYVEEPWTDSAVRRYVKDAGPLYERLNRLTRADATTQNRR 359
Query: 347 F-------------ILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEW 392
++ L + L GD++++ GI PG VG H +
Sbjct: 360 KAMIFSSAMDEMEQRVRDLKKKEDFDAIRPDLNGDEIMQLLGIEPGPMVGRAYKHMLEYR 419
Query: 393 INSS 396
+++
Sbjct: 420 LDNG 423
>gi|255027965|ref|ZP_05299951.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL J2-003]
Length = 117
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T
Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQS----TYDTG 63
Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
I++GT+ + +++++TT R++ R ++V F R + D RRDFT+NA
Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNA 117
>gi|262374298|ref|ZP_06067574.1| poly(A) polymerase I [Acinetobacter junii SH205]
gi|262310856|gb|EEY91944.1| poly(A) polymerase I [Acinetobacter junii SH205]
Length = 484
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/283 (19%), Positives = 118/283 (41%), Gaps = 9/283 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+++++ L K ++ IVGG VRD ++ L+ +D D T P +V +F + +
Sbjct: 18 PSILDVIDSLTKAGYEAYIVGGGVRDMMLGLNPKDFDAVTNATPAQVKEVFGRRCRIIG- 76
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ ++ T R+ G + + D RRDF+IN L
Sbjct: 77 --RRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134
Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y + ++ D+ ++D++ RT++F+G+ R ED +R+LR RF A + S
Sbjct: 135 YYQPRKAIVLDFCHAVDDIKTRTLRFLGEPAQRFEEDPVRMLRALRFAAKLNFQIDSSIL 194
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
V + + + L+ +S R++ E KL + + + G++K++F ++ +
Sbjct: 195 DVFNPEMTQLLRDVSPHRLYDESQKLFTMGHLNRVLPMLIEFGVWKQLFAEIPPNITAFI 254
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289
+ ++ K + + R
Sbjct: 255 ERAARNTDQRIQIGKTINPAFFYAVLLWKPFLERCDFYLNKGR 297
>gi|303256720|ref|ZP_07342734.1| poly(A) polymerase [Burkholderiales bacterium 1_1_47]
gi|302860211|gb|EFL83288.1| poly(A) polymerase [Burkholderiales bacterium 1_1_47]
Length = 468
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 100/232 (43%), Gaps = 12/232 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
I++ L K+ IVGGAVRD L+ +D D+AT P+ V ++ + I
Sbjct: 25 SPFAISVCQKLQDAGYKAFIVGGAVRDLLIGAKPKDFDVATDATPEEVKKVTRRA----I 80
Query: 72 PTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ + + + ++ T R DG + D+ RRDFT+N
Sbjct: 81 IIGRRFRLVHVNKGAETIEVATFRGFAKQGVTKDEDGVITNDNVFGEQYEDAARRDFTVN 140
Query: 126 ALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A+Y G + DY GL+D+R R I+ IGD R ED +RILR R A G ID
Sbjct: 141 AMYFDPISGDLYDYHHGLDDIRERKIRMIGDPATRYREDPVRILRAIRIAAKLGF-TIDE 199
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ L + S R+ E +K++ + + + + M I I L
Sbjct: 200 KTAAPMHYMQTLLLSVPSARLADEFSKMVLSGSAVACMELMNRYDINIPIPL 251
>gi|309389181|gb|ADO77061.1| Polynucleotide adenylyltransferase region [Halanaerobium praevalens
DSM 2228]
Length = 538
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 69/409 (16%), Positives = 131/409 (32%), Gaps = 13/409 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYK 69
L+ + + +VGG VRD L+N+ +D+DI +
Sbjct: 136 RRKLLLKLAKEASLLGYNLYLVGGQVRDLLINIPLNKDLDILLEGDLKKFFVHLENKYGY 195
Query: 70 VIPTSISYGTIKIICR--KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + T + DI + R + +V D +D RRDFTIN L
Sbjct: 196 QYDYNNKFST-GFLHNQYGFSIDIASCREEKYHFPGSLPLVEKADLFSDLFRRDFTINTL 254
Query: 128 YADQQGKVIDYVGGLNDLRNR--TIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NID 183
D + N + +D LRILR RF K +
Sbjct: 255 VIDLNPGRSGILYDFFGALNDLKNGILKVMHDYSFRDDPLRILRGIRFQILKDFKLSSKT 314
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
+ S++ K+ ++ + ++ E S
Sbjct: 315 IEISQRSLRNYDYHKLAIERVFTELSYLFKSKQDLSQFASVLLKEIPVLKLIKSDFEFSS 374
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
Q S + AE++ ++ L + S F N +
Sbjct: 375 SQKSNFLRAEKLLAQSRENSLGVNHFLVRLMILFYNSKESLIKSWPLSTLEKKIFVNKIW 434
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
SI EIK Y K ++ + N ++ +I ++ + +
Sbjct: 435 ENIDFSIFEIKDPALKYRRLEFFKKEELIMFASLN----FESDYIEEIFKHLKRRETLKI 490
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
P++G D++ G+ G ++ L+ + + + + +E L L+K++
Sbjct: 491 PISGHDLLDLGVKQGPEIKKYLLEVRDQILRHQIENREEAL-TYLKKIL 538
>gi|224541970|ref|ZP_03682509.1| hypothetical protein CATMIT_01143 [Catenibacterium mitsuokai DSM
15897]
gi|224525110|gb|EEF94215.1| hypothetical protein CATMIT_01143 [Catenibacterium mitsuokai DSM
15897]
Length = 460
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 73/452 (16%), Positives = 146/452 (32%), Gaps = 53/452 (11%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIF 63
++ K+ +++ + + +VGG VRD L+ +DID+ + + +
Sbjct: 1 MESKFSLTPLALDVFEAIKQAGGHVYLVGGCVRDFLLKRKSKDIDVEVHHLSFAALKEVL 60
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV----FTRDWKADSLR 119
S + ++ + + + ++ R + T ++ + R
Sbjct: 61 SPFGTVQV-MGAAFAVVH-LSTLEGYEFALPRIEEKTGLKHQDFNVIVDPDLPLEKACAR 118
Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
RDFTIN++ D + + I + +H ED LR+LR F + YG
Sbjct: 119 RDFTINSMLYDIETGTVIDFYSGQKDLKNGILRATNGNH-FSEDPLRVLRGASFMSRYGF 177
Query: 180 -KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA-------------IVHM 225
+ D+ L SI + GL LS+ERI++E K+L P + +
Sbjct: 178 KMDPDTKNLCQSIVEEGGLDTLSTERIYTEYCKILMGLYPSQGLNFLRDIHGLPFYLQDL 237
Query: 226 YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK--------- 276
+ + + L + A + L+ K
Sbjct: 238 DTTHQRTDYHPEGSVWNHTMLVTDLAALCKHHTSEPLWFMWSALLHDIGKPLVTTPEGHA 297
Query: 277 --------SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE--IKKLFYLYGDKVMI 326
++ L + + ++ + + T S K
Sbjct: 298 YGHAEEGAALFDEKVDLILSHKQKRYIYTMIQYHMVLPTFSRNHARKIKFLRFLKAIDQK 357
Query: 327 AKLKIFLALHYNNL------THQDTCFILQVLSDIIHW---KKPLFPLTGDDVVKYGIPP 377
A LK L L + T + + ++I P+ +TG D++ G
Sbjct: 358 APLKDLLYLARCDKLGRGMVTSASINELNAYVEEMISMCGDHAPVPIVTGKDLINEGFEN 417
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ IL + L++E + L+
Sbjct: 418 HQDYSKILSLAYDYQLQG---LNKEVIIRRLK 446
>gi|221065686|ref|ZP_03541791.1| poly(A) polymerase [Comamonas testosteroni KF-1]
gi|220710709|gb|EED66077.1| poly(A) polymerase [Comamonas testosteroni KF-1]
Length = 521
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 61/263 (23%), Positives = 117/263 (44%), Gaps = 37/263 (14%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D I+++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F +
Sbjct: 41 LVDRRAIDVVQTLKRSGHEAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKNLFRRAFI- 99
Query: 70 VIPTSISYGTIKIICR----KKYFDITTLR--------------------------SDLI 99
+ + ++ + +++T R +
Sbjct: 100 ---IGKRFRIVHVVYGRGRENEVIEVSTFRAFLDNSAAEQVSGNERTSKNQLAGLKHAVD 156
Query: 100 TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHH 158
GR + D+ RRDFTINA+Y D + ++ +DY GG+ D + + ++ IGD
Sbjct: 157 ASGRVLRDNVWGPQDQDATRRDFTINAMYYDPETQIVVDYHGGIADAKKKVLRMIGDPAT 216
Query: 159 RILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R ED +RI+R RF A +++ ++ + L+ + R++ E+ KLL+
Sbjct: 217 RYREDPVRIIRAVRFAAKLSSKGFKLEAKTAKPLVECEPLLQEVPQSRLFDEMLKLLQTG 276
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ 239
+ L ++ + G+ + I+ +
Sbjct: 277 HALASVAQLKELGLSRGIYPLLD 299
>gi|126656204|ref|ZP_01727588.1| polyA polymerase [Cyanothece sp. CCY0110]
gi|126622484|gb|EAZ93190.1| polyA polymerase [Cyanothece sp. CCY0110]
Length = 419
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 65/411 (15%), Positives = 132/411 (32%), Gaps = 44/411 (10%)
Query: 29 SCIVGGAVRDSLMN--LSVQDIDIATTILPDRV-MRIFSKTRYKVIPTSISYGTIKIICR 85
+ +VGG VRD+L+N D+D + +I ++ + +++ +
Sbjct: 20 AYLVGGMVRDALLNYQRDYFDLDFVLPDFAIEIAKKIANQYNAGFVVLDAERNIARVVFK 79
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ D + D RRDFTINA+ + Q +
Sbjct: 80 QGTVDFA--------------QQEGDSIEKDLRRRDFTINAIAYNFQQQKFIDPLNGLQD 125
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+ + + +D LR+LR +R A + I+ + + +++ER+
Sbjct: 126 LQTKTIKMISVKN-LEDDPLRLLRAYRQAAQL-KFQIEPKTRETIAQLSFLIPQVAAERV 183
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ-------VIEAEQVFEW 258
+E+N LL + M G+ F + +L L ++ + +
Sbjct: 184 QTELNYLLGNVEGSQWLSKMKKDGLLSPWFSHIDNYNLQLLEAIDRSIKLLLHKYKQDKS 243
Query: 259 KIDSLLRFI----------------VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
KID L + + + + +++ N
Sbjct: 244 KIDHLFAIQENEEVYSSYIVQKSRLTCLVSNNPEIAKRELSNLKYSNQDIKTVLNVLNHL 303
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
K ++ L++L+ + + +AL N I L P
Sbjct: 304 PWLKNKQQVSLRDLYFLFLELGDNFPIFALVALAKNADHKLILQLIDHYLDSDDKVAHPT 363
Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+TG D++ I P ++G +L + QE L + +
Sbjct: 364 SLITGHDLINHLNIKPSPQLGQLLTEVLIAQVEGKISTKQEAL-KFAKDYV 413
>gi|39938588|ref|NP_950354.1| tRNA nucleotidyltransferase/polyA polymerase [Onion yellows
phytoplasma OY-M]
gi|39721697|dbj|BAD04187.1| tRNA nucleotidyltransferase/polyA polymerase [Onion yellows
phytoplasma OY-M]
Length = 412
Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 95/404 (23%), Positives = 160/404 (39%), Gaps = 22/404 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYKVI 71
I+++L ++ IVGG VRD L+ ++ +DIDI T P ++ + K
Sbjct: 14 KTAQKIITILKTNGFEAFIVGGTVRDYLLKINANEDIDITTAAAPQQIKLLL--CPEKTT 71
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG-RYA-KVVFTRDWKADSLRRDFTINALYA 129
I+YG+ KI F+ITT R + R+ ++ FT++ D LRRDFTIN L
Sbjct: 72 QIKINYGSFKITFENYLFEITTYRKEGTYKDYRHPSEIFFTKNIHQDLLRRDFTINTLLM 131
Query: 130 DQQGKVIDY---VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
D+ GK+ D+ G DL+ I+ I D R ED LRILR F F + G I+
Sbjct: 132 DETGKIFDFTPEKQGKKDLKQGLIRTIKDPFIRFQEDPLRILRAFYFQSKLGF-CIEKTT 190
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A I+ L +SS+RI+ I K++ KN M +FL S+ L
Sbjct: 191 QKAIIRKNHLLAKISSQRIYENIEKIITHKNWHQTFKTMIETKT--HLFLPQLNQSILCL 248
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + E + + L R I + + + F+ ++ N
Sbjct: 249 AYLHETKLKYIQAHHKLKRRIFWSMSLLLNNQILASFPFTKQKK---------KSYQNIA 299
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+LS+ + + + + L + I + + +
Sbjct: 300 SLSLYLWENITFNLFKHGLKNCLLANQINYLLQKEPYAAAKIQYIYQYLPIKTITELNFS 359
Query: 367 GDDVVKY--GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+V+K P G + + + +N +E L + +
Sbjct: 360 WQEVLKQLPHKPKGTWIKHTQKQLITKVLNREIPNIKEQLINFV 403
>gi|299771543|ref|YP_003733569.1| poly(A) polymerase I [Acinetobacter sp. DR1]
gi|298701631|gb|ADI92196.1| poly(A) polymerase I [Acinetobacter sp. DR1]
Length = 487
Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 54/279 (19%), Positives = 117/279 (41%), Gaps = 9/279 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S +++++ L K ++ IVGG VRD ++ + +D D T P ++ +F + +
Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGFNPKDFDAVTNATPSQIKEVFGRRCRIIG- 76
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ ++ T R+ G + + D RRDF+IN L
Sbjct: 77 --RRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134
Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y + ++ D+ ++D++N+T++ +GD R ED +R+LR RF A K +
Sbjct: 135 YYQPRKSIVLDFCKAIDDVKNKTLRLLGDPAQRFEEDPVRMLRTLRFAAKLNFKIDSNIL 194
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + + L+ +S R++ E KL + + + G++K++F D+Q +
Sbjct: 195 DIFDAEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIEFGVWKQLFADIQPNLTPFI 254
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + ++ + +
Sbjct: 255 LRAAKNTDQRIQVGKTINPAFFYAVLLWQPFLERCEFYL 293
>gi|269101800|ref|ZP_06154497.1| poly(A) polymerase [Photobacterium damselae subsp. damselae CIP
102761]
gi|268161698|gb|EEZ40194.1| poly(A) polymerase [Photobacterium damselae subsp. damselae CIP
102761]
Length = 430
Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 66/244 (27%), Positives = 102/244 (41%), Gaps = 26/244 (10%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
L LNK + +VGG VRD L+N +D DIAT P+ + +F R +
Sbjct: 2 LYRLNKAGFDAYLVGGGVRDLLLNKQPKDFDIATNATPEEIKALFRNCRL----VGRRFR 57
Query: 79 TIKIICRKKYFDITTLRSDL--------------------ITDGRYAKVVFTRDWKADSL 118
I+ + ++ T R G + D+
Sbjct: 58 LAHILFGRDIIEVATFRGHHSDPQPLPKEKEAKQKQTSAQNQSGMLLRDNVYGTIDEDAE 117
Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDFTINALY + V DY G+ DL + I+ IGD R ED +R+LR RF A
Sbjct: 118 RRDFTINALYYSVKDFTVTDYAHGVEDLDDGIIRLIGDPETRYREDPVRMLRAVRFAAKL 177
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
NI+ + + L+ + + R++ E KLL++ L + +F+++F
Sbjct: 178 DM-NIERNTEAPIKQLAHLLQDIPAARLFEESLKLLQSGQGLATYHLLRQYNLFEQLFPL 236
Query: 238 VQEI 241
+ E
Sbjct: 237 LGEH 240
>gi|262163987|ref|ZP_06031726.1| poly(A) polymerase [Vibrio mimicus VM223]
gi|262027515|gb|EEY46181.1| poly(A) polymerase [Vibrio mimicus VM223]
Length = 413
Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 73/383 (19%), Positives = 140/383 (36%), Gaps = 33/383 (8%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
++ +VGG VRD L+ +D D+AT P+++ ++F R + I+
Sbjct: 4 AGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL----IGRRFRLAHIMF 59
Query: 85 RKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLRRDFTINALYADQ- 131
+ ++ T R G + D+ RRDFTINA+Y +
Sbjct: 60 GRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIA 119
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ DY GG+ DL +R ++ IGD R ED +R+LR RF +I+ D
Sbjct: 120 DYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLDF-DIEEDTAEPIE 178
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L+ + + R++ E K+L+A + L M +F+++F + E +
Sbjct: 179 HLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTIAEH--FTADHSSQ 236
Query: 252 AEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
EQ+ + +D+ +R + +M + + + S
Sbjct: 237 TEQMLDLVLDATDIRVEEDLRINPAFMFAAMLWYPMISLADQLMESLSLHEFDAMTEASN 296
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+ ++ + L + ++L ++ ++ G D
Sbjct: 297 RILDEVVKRIAIPRRHTTTIRDIWQLQQRLPRRSGKRAFRLL-ELSKFRA------GFDF 349
Query: 371 VKY-GIPPGKKVGNILVHCKQEW 392
++ G G G + W
Sbjct: 350 LEMRGEIEG---GET-KQLAEWW 368
>gi|147669033|ref|YP_001213851.1| polynucleotide adenylyltransferase region [Dehalococcoides sp.
BAV1]
gi|146269981|gb|ABQ16973.1| Polynucleotide adenylyltransferase region [Dehalococcoides sp.
BAV1]
Length = 416
Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 73/414 (17%), Positives = 147/414 (35%), Gaps = 22/414 (5%)
Query: 9 WFHD---SDLINIL----SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
+ + ++ ++ L +VGG VRD L+N + D D+ + +
Sbjct: 9 FLKNRLPPEINRLILHAAELAASQNLHLYLVGGLVRDFLLNKTPNDADLVLATNAIKFGQ 68
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ + + DI+T R++ D V D KAD RRD
Sbjct: 69 GLLEGFNYKATLHPRFNNLSADINGFKLDISTARNEFYPDPGKLPEVLEGDIKADLFRRD 128
Query: 122 FTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
F INA+ G ++D GL DL+ + + +D RI R R+
Sbjct: 129 FKINAMALSLSPQDFGCLVDPYNGLTDLKQHKLSVLHP--KSFRDDPSRIWRALRYSERL 186
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G +I S+ L + + + ++ ++R+ E+ + + P N ++ G+ K
Sbjct: 187 GF-DISSETLTLLQRDAQLITLIGADRLRYEMECIFKEAKPENILLKAEETGVLKNSLPF 245
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
++ + + EA ++ + + +L DK ++ L + I L
Sbjct: 246 IKADNWLA-DKFAEARNMYGENVSPEIYLCLLSVRLDKSQAEALITGLHLSKYISACLRD 304
Query: 298 FFNCNFNQKTLSIPE-IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ + L + Y K + F + N + + + LS I
Sbjct: 305 YQCLAEHLAELGRVDLKPSRLYGILAKCKKEARQAFYIANDNLIVRKHLMLFQEELSSI- 363
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
L G D++ G PG + +L ++ +++ ++ R+
Sbjct: 364 -----KPCLKGTDLLTLGFAPGPDIKAVLAELLNLKLDGKIPSRTDEIDYVKRR 412
>gi|218437193|ref|YP_002375522.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7424]
gi|218169921|gb|ACK68654.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7424]
Length = 408
Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 70/402 (17%), Positives = 135/402 (33%), Gaps = 31/402 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSK-TRYKVIPTSISYGTIKIICR 85
+ +VGGAVRD+L+ D+D L R +K + +++ +
Sbjct: 21 AYLVGGAVRDALLKRHRDYLDLDFVLPQLAIETARKIAKVYHAGFVILDQQRQIARVVFK 80
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ D + D RRD+T+NA+ + + G +
Sbjct: 81 ESTVDFAL--------------QEGETLETDLHRRDYTVNAIAYNPHRGKLIDPLGGLND 126
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+ I + + + +D LR+LR +R A ID K L +++ER+
Sbjct: 127 LKQGILRMVSQKN-LEDDPLRLLRAYRQAAQLNF-TIDPITRSTLSKLAPLLSQVAAERV 184
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265
+E+ LL I+ + G+FK+ F + +D LS++ + Q + K++ +
Sbjct: 185 QTELGYLLTHSQGTYWIIEAWKDGLFKDWFKTLTPDKIDLLSRIDSSVQTLQKKLNEQFK 244
Query: 266 FI---------VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+ + R + + F + S +
Sbjct: 245 VTEETLGIAKLTCLVSHVPEQAELELIDLKYSRAEIRAVTTTLKAIFQLQEHSDQMTLRE 304
Query: 317 FYLYGDKV-MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YG 374
Y + +V I + A+ + L P +TG D+ +
Sbjct: 305 QYFFFLQVGNIFPILAIFAIALGINQELILALSQRYLDPHDPVAHPQPLITGHDLKESLN 364
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ P +G +L + I E + + LI S Q
Sbjct: 365 LKPSPLIGKLLTELQIAQIEEKIVTVDEAID-FAKYLINSEQ 405
>gi|239500709|ref|ZP_04660019.1| poly(A) polymerase [Acinetobacter baumannii AB900]
Length = 487
Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/279 (18%), Positives = 120/279 (43%), Gaps = 9/279 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S +++++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + +
Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGRRCRIIG- 76
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ ++ T R+ G + + D RRDF+IN L
Sbjct: 77 --RRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134
Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y + ++ D+ ++D++++T++ +GD R ED +R+LR RF A K +
Sbjct: 135 YYQPRKGIVLDFCKAIDDVKSKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFKIDPAIL 194
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ ++ + L+ +S R++ E KL + + + + G++K++F D++ +
Sbjct: 195 DIFDVEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIDFGVWKQLFADIRPDLTPFI 254
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + ++ + +
Sbjct: 255 QRAAKNTDQRIQVGKTINPAFFYAVLLWQPFLERCDFYL 293
>gi|169797165|ref|YP_001714958.1| poly(A) polymerase I (PAP) [Acinetobacter baumannii AYE]
gi|213156045|ref|YP_002318090.1| poly(A) polymerase [Acinetobacter baumannii AB0057]
gi|260556069|ref|ZP_05828288.1| poly(A) polymerase I [Acinetobacter baumannii ATCC 19606]
gi|301346231|ref|ZP_07226972.1| poly(A) polymerase I [Acinetobacter baumannii AB056]
gi|301510751|ref|ZP_07235988.1| poly(A) polymerase I [Acinetobacter baumannii AB058]
gi|301596033|ref|ZP_07241041.1| poly(A) polymerase I [Acinetobacter baumannii AB059]
gi|169150092|emb|CAM87986.1| poly(A) polymerase I (PAP) [Acinetobacter baumannii AYE]
gi|193076373|gb|ABO11034.2| poly(A) polymerase I (PAP) [Acinetobacter baumannii ATCC 17978]
gi|213055205|gb|ACJ40107.1| poly(A) polymerase [Acinetobacter baumannii AB0057]
gi|260410124|gb|EEX03423.1| poly(A) polymerase I [Acinetobacter baumannii ATCC 19606]
Length = 487
Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/279 (18%), Positives = 120/279 (43%), Gaps = 9/279 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S +++++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + +
Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGRRCRIIG- 76
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ ++ T R+ G + + D RRDF+IN L
Sbjct: 77 --RRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134
Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y + ++ D+ ++D++++T++ +GD R ED +R+LR RF A K +
Sbjct: 135 YYQPRKGIVLDFCKAIDDVKSKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFKIDPAIL 194
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ ++ + L+ +S R++ E KL + + + + G++K++F D++ +
Sbjct: 195 DIFDVEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIDFGVWKQLFADIRPDLTPFI 254
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + ++ + +
Sbjct: 255 QRAAKNTDQRIQVGKTINPAFFYAVLLWQPFLERCDFYL 293
>gi|169634350|ref|YP_001708086.1| poly(A) polymerase I (PAP) [Acinetobacter baumannii SDF]
gi|169153142|emb|CAP02225.1| poly(A) polymerase I (PAP) [Acinetobacter baumannii]
Length = 487
Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/279 (18%), Positives = 119/279 (42%), Gaps = 9/279 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S +++++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + +
Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGRRCRIIG- 76
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ ++ T R+ G + + D RRDF+IN L
Sbjct: 77 --RRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134
Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y + ++ D+ ++D++++T++ +GD R ED +R+LR RF A K +
Sbjct: 135 YYQPRKGIVLDFCKAIDDVKSKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFKIDPAIL 194
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ ++ + L+ +S R++ E KL + + + G++K++F D++ +
Sbjct: 195 DIFDVEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIAFGVWKQLFADIRPDLTPFI 254
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + ++ + +
Sbjct: 255 QRAAKNTDQRIQVGKTINPAFFYAVLLWQPFLERCDFYL 293
>gi|116074472|ref|ZP_01471734.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
RS9916]
gi|116069777|gb|EAU75529.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
RS9916]
Length = 416
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 67/418 (16%), Positives = 129/418 (30%), Gaps = 35/418 (8%)
Query: 3 SIVQHKWFHDSDLINILSLLN-KGEDKSCIVGGAVRDSLMN-------LSVQDIDIATTI 54
S VQ DS L+ + +G + +VGGAVRD+L++ + D+D+
Sbjct: 5 SPVQLPGIPDSVLLALQDEARLQGGVRLALVGGAVRDALLHHNHRDPWRELPDLDLVVEG 64
Query: 55 LPDRVMR----IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFT 110
+ + + R + S+GT++++ D+ R + VV
Sbjct: 65 STEALAQGLRQRLGAERVPELRVHGSFGTVEMVLDGVLLDLAQARQERYLAPGDNPVVEP 124
Query: 111 RDWKADSLRRDFTINALYA-----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165
+ D RRDFT+NA+ D + +++D GG DL R + F+ + +D
Sbjct: 125 GSLRNDLARRDFTVNAMALVLGVGDAEPELLDLHGGQEDLEARQLNFLHV--GSVQDDPT 182
Query: 166 RILRFFRFFAHYGE---------KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
R++R R+ A G + L + +L
Sbjct: 183 RVVRGARYAARLGFGLAPQALEQVQTTVGAWPWPWRQGDALDRVPPALGTRLRMELELLL 242
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK 276
+ + + L + D+L S
Sbjct: 243 GREPWRQALGYLQAWGALPLLDPSLQNDRLLLRRLRWAERLGVPLLSALVAASASSLALA 302
Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
L + + E R + + + + A++
Sbjct: 303 QRLQLPLQQQRWIEERMGFQIWLAEQVLPCSWQDWSAARWTEALESRPWSAEVVALEVAL 362
Query: 337 YNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
+L W+ P T D++ G+ PG ++G L + + +
Sbjct: 363 MGPC-------WRPLLRWWGRWRHVQSPQTARDLIATGLKPGPQLGETLRQLRLQRLE 413
>gi|297566438|ref|YP_003685410.1| polynucleotide adenylyltransferase region [Meiothermus silvanus DSM
9946]
gi|296850887|gb|ADH63902.1| Polynucleotide adenylyltransferase region [Meiothermus silvanus DSM
9946]
Length = 854
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 68/433 (15%), Positives = 133/433 (30%), Gaps = 52/433 (12%)
Query: 3 SIVQHKWFHDS-DLINILSLLNKG--EDKSCIVGGAVRDSLMNLSVQDIDIATTILP--- 56
++ Q W + +L + + E +VGG VRD+L+ + D+D+ + P
Sbjct: 454 NLAQQIWERLPRGVQEVLERIQQAYPEGGIYVVGGTVRDALLGMGGPDLDLV--LEPLTV 511
Query: 57 ------------DRVMRIFSKTRYKVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGR 103
D + R +++GT ++ D+ R +
Sbjct: 512 FASQSNHRRNRLDELARQLVGWFGGSFGLHVAFGTARVKLGFGLEVDLAEAREEYYPHPG 571
Query: 104 YAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILED 163
V D RRDFT+NAL ++ +ED
Sbjct: 572 ALPQVRPSSIARDLERRDFTVNALALRLSPRLEIVDLFDGLADLEARLLRPLHPLSFVED 631
Query: 164 YLRILRFFRFFAHYGE-KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222
RILR R A G ++ + S + L S R+ E+ L + A+
Sbjct: 632 PSRILRGVRLAARLGFRFAPEALAQIPSAVQPEVLAQASKSRLRDELLLTLGEASATRAL 691
Query: 223 VHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282
+ G+ + +F + + +E ++ + + +
Sbjct: 692 GLLAELGVAEPMFGMGASPQVREAFAALEPILQTTSDPEAAVAARLYLLLHFHPDPEGFL 751
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
+++LPR L + + + L
Sbjct: 752 TRYNLPRRYAEGLRHLRFPPEDPDDIRKFVGLPEAFRALHPERALWLL------------ 799
Query: 343 QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402
P L G D+++ G+P G K+G +L + + ++
Sbjct: 800 -----------------TPRRMLMGRDLLEMGLPSGPKIGEVLRKVAEARLRGEVLSYED 842
Query: 403 DLHHLLRKLIASS 415
+L RKL++ +
Sbjct: 843 EL-EFARKLVSDA 854
>gi|254445871|ref|ZP_05059347.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Verrucomicrobiae bacterium DG1235]
gi|198260179|gb|EDY84487.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Verrucomicrobiae bacterium DG1235]
Length = 473
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 67/455 (14%), Positives = 129/455 (28%), Gaps = 64/455 (14%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIP 72
L L L +VGG++RD+L+ L +D D+ D + + +K K
Sbjct: 17 ALKQALQTLESAGATCRVVGGSIRDALLGLEPKDFDVEVYGLDLDSIAQTLAKLG-KTDL 75
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALY 128
++ +K+ + +D R + + + + RRDFTINAL
Sbjct: 76 VGKAFAVVKLWTHGEEYDFAIPRRESKSGSGHRGFTIETDAHLSEEEALKRRDFTINALL 135
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D + L + + + ED LR+LR +F + + +
Sbjct: 136 YDHATSEVIDYFN--GLEDLERRILRHVSPAFSEDPLRVLRAMQFAGRFEMELHPDTAAL 193
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ + +++ + + + G + SL Q +
Sbjct: 194 CRKIGHEFWTLPKERVWTEWEKWAKRSRSLSHGLRALVASGWLRYFPELNALRSLPQDPE 253
Query: 249 VIEAEQVFEWKIDSL-------------------LRFIVLISWQ----DKKSILSMAKKF 285
+ + L L F VL + L +K
Sbjct: 254 WHPEGDAWTHTLYCLDALVRDTDWSSLAEAERGVLAFGVLCHDLGKARCTRWALKRGEKH 313
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------- 326
+ + FN+ K+ L G+ +
Sbjct: 314 WISPGHDSQSVWLAEQFFNKMRAPHELRDKVMALVGNHHFLNTVPEGGHSDASLRRLAKR 373
Query: 327 -------AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK-------PLFPLTGDDVVK 372
+ + A H L++ I +K P L G ++
Sbjct: 374 LSPATTHELVYVMTADHRGRPPLLSEAQDLRIAEFKIRIQKLDLKESAPSPILLGRHLIA 433
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
G+ P IL + ++ SF+ + L
Sbjct: 434 RGLKPSPNFRPILDAAYEAQLDGSFRDEAGAIEWL 468
>gi|226954317|ref|ZP_03824781.1| poly(A) polymerase I (PAP) [Acinetobacter sp. ATCC 27244]
gi|294649356|ref|ZP_06726787.1| poly(A) polymerase I [Acinetobacter haemolyticus ATCC 19194]
gi|226834943|gb|EEH67326.1| poly(A) polymerase I (PAP) [Acinetobacter sp. ATCC 27244]
gi|292824726|gb|EFF83498.1| poly(A) polymerase I [Acinetobacter haemolyticus ATCC 19194]
Length = 483
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 58/280 (20%), Positives = 119/280 (42%), Gaps = 9/280 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S +++++ L K ++ IVGG VRD ++ L+ +D D T P +V +F + +
Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDMMLGLNPKDFDAVTNATPAQVKEVFGRRCRIIG- 76
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ ++ T R+ G + + D RRDF+IN L
Sbjct: 77 --RRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134
Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y + V+ D+ G+ D++ RT++F+G+ R ED +R+LR RF A + S
Sbjct: 135 YYQPRKGVVLDFCQGVEDIKTRTLRFLGEPAQRFEEDPVRMLRALRFAAKLNFQIDQSIL 194
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
V ++ + L+ +S R++ E KL + + + G++K++F ++ +
Sbjct: 195 DVFDVEMTQLLRDVSPHRLYDESQKLFTMGHLTQVLPMLIEFGVWKQLFAEIPPNITSFI 254
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286
+ + ++ K + +
Sbjct: 255 ERAAKNTDQRIQIGKTINPAFFYAVLLWKPFLERCDFYLN 294
>gi|254516607|ref|ZP_05128666.1| poly(A) polymerase [gamma proteobacterium NOR5-3]
gi|219675030|gb|EED31397.1| poly(A) polymerase [gamma proteobacterium NOR5-3]
Length = 404
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 105/237 (44%), Gaps = 18/237 (7%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
+S L + ++ +VGGAVRD L+ +D DIAT P+ V +FS +R +
Sbjct: 1 MSRLRDRDHQAYLVGGAVRDLLLGGHPKDFDIATDATPEEVHALFSNSRI----IGRRFR 56
Query: 79 TIKIICRKKYFDITTLRSDLIT------------DGRYAKVVFTRDWKADSLRRDFTINA 126
+ + ++ ++TT R G + + D++RRD T+NA
Sbjct: 57 IVHVRFGREVIEVTTFRGHHDDGDPTGPAAKRSSRGLLLRDNVFGTLEEDAVRRDLTVNA 116
Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
LY D +V D VGGL+DL R ++ IGD R ED +R+LR RF A ++
Sbjct: 117 LYYDSGSFEVFDQVGGLDDLEARQVRVIGDPAKRYREDPVRMLRTLRFAAKLDF-RVEKG 175
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ L + + R++ E KL A N + + F +F D ++
Sbjct: 176 SGAPIAELASLLDDIPAARLFDEFGKLFLAGNAQLTLRLLREYRCFDHLFPDSARLA 232
>gi|310779232|ref|YP_003967565.1| Polynucleotide adenylyltransferase region [Ilyobacter polytropus
DSM 2926]
gi|309748555|gb|ADO83217.1| Polynucleotide adenylyltransferase region [Ilyobacter polytropus
DSM 2926]
Length = 427
Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats.
Identities = 70/435 (16%), Positives = 138/435 (31%), Gaps = 56/435 (12%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNL---SVQDIDIATTI-LPDRVMRIFSKTRYKVI 71
++ + + ++ +VGG VRD LM ++DID+ D+ +I K K
Sbjct: 3 RKLIKEIWENNGEAYLVGGWVRDRLMGATEDEIKDIDLEVMGIKRDKFEKILQKYG-KFK 61
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
SY +I L + + + + K + RRDFT+N++Y +
Sbjct: 62 KVGKSY------------EIYILNNSIEI----SFIEVKIPIKECARRRDFTVNSIYYNL 105
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
G + + + L+D LRILR +F + +G ++
Sbjct: 106 IEDKYLDFFGGMEDIKNKLLSY-VDKNSFLQDPLRILRTAQFISRFGFSADHLLEVIIKT 164
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ ++ K+ + P + + GI + I ++ + ++
Sbjct: 165 EKEEISKVPKERICRELEKIYMLGIKPSEGFLFLEKTGILQRIMPEISSLKEVMQDEIYH 224
Query: 252 AE-QVFEWKIDSL-----------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
E VF + L L + +L KK + +
Sbjct: 225 PEGDVFTHTMMMLDVLSKEERTRELFWSILYHDAGKKETFPGFEGHCEKSHEIFDREIIK 284
Query: 300 NCNFNQKTLSIPEIKKL-----------------FYLYGDKVMIAKLKIFLALHYNNLTH 342
+ + ++ + KV I KL
Sbjct: 285 FTDNRDLINNARKLVRYHEEPLKILLKGGADKISVKKLAAKVDIDKLLKLYRCDVLGRGR 344
Query: 343 QDTCFILQVLSDI-----IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397
D L+++ I + + G D++K+G+ PG+ G IL + + F
Sbjct: 345 SDNKKELEIIESIGAVYHRVKDELKPIVKGKDLIKWGLEPGENFGEILKELYEAQLEEEF 404
Query: 398 QLSQEDLHHLLRKLI 412
+E +L
Sbjct: 405 NNLKEAEEFYFTRLA 419
>gi|262281001|ref|ZP_06058784.1| poly(A) polymerase I [Acinetobacter calcoaceticus RUH2202]
gi|262257901|gb|EEY76636.1| poly(A) polymerase I [Acinetobacter calcoaceticus RUH2202]
Length = 487
Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats.
Identities = 54/279 (19%), Positives = 117/279 (41%), Gaps = 9/279 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S +++++ L K ++ IVGG VRD ++ + +D D T P ++ +F + +
Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGFNPKDFDAVTNATPAQIKEVFGRRCRIIG- 76
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ ++ T R+ G + + D RRDF+IN L
Sbjct: 77 --RRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134
Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y + ++ D+ ++D++N+T++ +GD R ED +R+LR RF A K +
Sbjct: 135 YYQPRKAIVLDFCKAIDDVKNKTLRLLGDPTQRFEEDPVRMLRTLRFAAKLNFKIDSNIL 194
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + + L+ +S R++ E KL + + + G++K++F D+Q +
Sbjct: 195 DIFDAEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIEFGVWKQLFADIQPNLTAFI 254
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + ++ + +
Sbjct: 255 LRAAKNTDQRIQVGKTINPAFFYAVLLWQPFLERCEFYL 293
>gi|167045541|gb|ABZ10193.1| putative Poly A polymerase family protein [uncultured marine
microorganism HF4000_APKG10H12]
Length = 453
Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats.
Identities = 66/281 (23%), Positives = 117/281 (41%), Gaps = 36/281 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D+D + ++ L + ++ +VGG VRD L++ +D D+ T+ P ++ R+F
Sbjct: 20 DNDALKVIYRLQQHNFETYLVGGGVRDLLLDRRPKDFDLGTSAHPQQIKRLFRNCWI--- 76
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-----------------------GRY---- 104
+ I +K ++ T R + + R
Sbjct: 77 -IGRRFRLAHIKFGRKTLEVATFRKQVPPETDTERAAREAERERAKQKATAAGDRQTRTR 135
Query: 105 ---AKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRI 160
+ + D+ RRDFTINAL+ D + I DYV G+ D+ RTI+ IGD + R
Sbjct: 136 LVIPRDNTFGTAEEDAFRRDFTINALFYDASTRSILDYVDGMRDIGRRTIRSIGDPNERF 195
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
+ED +R+LR A +ID A + + + S R+ E+ K+ +
Sbjct: 196 IEDPVRMLRAVVLAARLD-LSIDPAVSTAIRRHRGEIVHSSPARLVEELYKIARSGASER 254
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
I + + G+ K I ++ D L + + A + + D
Sbjct: 255 IIHDLGDAGLLKFIAPELDRARSDALWKSLGALDSYRRRFD 295
>gi|330974599|gb|EGH74665.1| poly(A) polymerase [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 412
Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats.
Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 20/224 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
++ +VGG VRD ++N++ +D D+AT+ P++V F R + + I ++
Sbjct: 1 QAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IGRRFKLVHIHFGRE 56
Query: 88 YFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132
++ T R++ D GR + + D+ RRDFTINALY D
Sbjct: 57 IIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRRDFTINALYYDPVS 116
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+V+DY G++D+RNR I+ IGD R ED +R+LR RF A I+
Sbjct: 117 ERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF-GIEKHSAQPIRA 175
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
L+ + S R++ E+ KL + + + + +F+ +F
Sbjct: 176 LAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 219
>gi|302338419|ref|YP_003803625.1| poly(A) polymerase [Spirochaeta smaragdinae DSM 11293]
gi|301635604|gb|ADK81031.1| poly(A) polymerase [Spirochaeta smaragdinae DSM 11293]
Length = 393
Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats.
Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 10/232 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
DSD I L ++ IVGGAVRD L S +D DIAT+ P +V ++F +R
Sbjct: 33 DSDAFAITRRLKDAGFEAYIVGGAVRDLLQGKSPKDFDIATSAYPKQVRKLFRNSRI--- 89
Query: 72 PTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ + + K +++T R+D + D RRDF++NALY D
Sbjct: 90 -IGRRFRLVHVHYGSGKIIEVSTFRTDDEEG---NSNNVFGTLEDDVKRRDFSVNALYFD 145
Query: 131 QQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
Q +ID+V G+ D+R +K + +D +R++R ++ G + A
Sbjct: 146 PQKLHIIDFVDGVKDVRAGKMKSLLPLDRTFKDDPVRMIRAIKYST-GGGFRMGWKLRRA 204
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ L+ S R+ E+ K+L + I G+F+ + + +
Sbjct: 205 IARHVDELERCPSSRMTEEVFKVLASGRSALLIDEFLKTGLFRHMLPRIDSL 256
>gi|166367858|ref|YP_001660131.1| polyA polymerase [Microcystis aeruginosa NIES-843]
gi|166090231|dbj|BAG04939.1| polyA polymerase [Microcystis aeruginosa NIES-843]
Length = 405
Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats.
Identities = 74/417 (17%), Positives = 148/417 (35%), Gaps = 35/417 (8%)
Query: 12 DSDLINILSLLNKGE--DKSCIVGGAVRDSLMNLSVQ--DIDIATTILPDRVMR-IFSKT 66
DS + + +N+ E + + +VGGAVRD+L+N D+D + + I +
Sbjct: 8 DSLVKEVF-AINRQELPENAYLVGGAVRDALLNRQKDYIDLDFVVPEKAIEIAQTIAHQY 66
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + +++ + D + D RRDFT+NA
Sbjct: 67 KAGFVVLDAVRQIARVVFPQGTLDFA--------------QQEGESLEIDLKRRDFTVNA 112
Query: 127 LYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
L + ++ D +GGL DL ++++ I + + +D LR+LR +R A I+
Sbjct: 113 LAYNLHTQEIFDPLGGLKDLGCQSLRMISREN--LQDDPLRLLRAYRQAAQLDF-EIEPH 169
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L +++ER+ SE+N LL + + G+ + +++
Sbjct: 170 TRATIRSLAPLLHRVAAERVQSELNYLLLNSRGNKWLKSAWEDGLLSLWLRRITPAKMER 229
Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ + E L + L+ R +I
Sbjct: 230 VMGVEAAAGFLESLLPENFIFSPSQLQLTKLALLVSDILAEAEKELIDLKYSRGEIRTVI 289
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ C K +++ +++Y + + + AL + + L
Sbjct: 290 TVIKCLPPLKEADNLSLREQYFIYLNTGKVFPIFALFALSMGINKNIVASLLTSYLDPDN 349
Query: 357 HWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
P L GDD++ + P +G +L + I + QE + +KL+
Sbjct: 350 IIAHPRPLLRGDDLINHLHLKPSPIIGKLLTEVQIAQIEGQVTVFQEAID-FAKKLL 405
>gi|67924728|ref|ZP_00518132.1| Polynucleotide adenylyltransferase [Crocosphaera watsonii WH 8501]
gi|67853415|gb|EAM48770.1| Polynucleotide adenylyltransferase [Crocosphaera watsonii WH 8501]
Length = 424
Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats.
Identities = 75/411 (18%), Positives = 146/411 (35%), Gaps = 45/411 (10%)
Query: 29 SCIVGGAVRDSLMNLSVQ--DIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
+ +VGG VRD+L+N D+D A ++ + +I +K + +++ +
Sbjct: 26 AYLVGGMVRDALLNRKRDYLDLDFALPNLVIETAKKIANKYHAGFVVLDDKRNIARVVFK 85
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA-DQQGKVIDYVGGLND 144
+ D + D RRDFTINA+ + K+ID GL D
Sbjct: 86 QGTVDFA--------------QQEGDSIEKDLSRRDFTINAIAYNFHKQKLIDPFHGLKD 131
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
L+ +T++ I + + +D LR+LR +R A I++ ++ + +++ER
Sbjct: 132 LQIKTMRMISVKN--LQDDPLRLLRVYRQAAQLNF-TIETQTRQTIVELSSLINQIAAER 188
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID--- 261
+ SE N LL + N + + G+ K F +L L V + ++ + ++
Sbjct: 189 VQSEFNYLLGNEGGSNWFIQIEQDGLLKPWFSGTNNNNLQLLQGVDHSVKLLQNRLTKED 248
Query: 262 ------------------SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
+ + D K + ++ +
Sbjct: 249 FNDFFSLRGEDTVYSSSLLQRARLTCLVSNDAKIAKEELINLKYSNQDIKAVLKVLSNLP 308
Query: 304 NQKTLSIPEIKKLFYLYGDKV-MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + + Y ++ I + +AL N I L P+
Sbjct: 309 SLEKDKQNISLREIYFLFLELGNIFPIFALVALGKNINNDLILKLISHYLDPQDKLAHPI 368
Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+TG D++ I P ++G +L I + E L R +
Sbjct: 369 PLITGHDLINYLKIKPSPQLGQLLTEVSIAQIEGKIENKAEAL-EFARDYL 418
>gi|197286208|ref|YP_002152080.1| multifunctional tRNA
nucleotidyltransferase/2'-nucleotidase/2',3'-cyclic
phosphodiesterase [Proteus mirabilis HI4320]
gi|226702074|sp|B4EW50|CCA_PROMH RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|194683695|emb|CAR44665.1| multifunctional Cca protein [includes: tRNA nucleotidyltransferase;
2'-nucleotidase and 2',3'-cyclic phosphodiesterase]
[Proteus mirabilis HI4320]
Length = 407
Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats.
Identities = 65/345 (18%), Positives = 126/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+NL V+D D P+ +++ + K P +
Sbjct: 2 KIYLVGGAVRDQLLNLPVKDRDWVVVGATPETLLQQGYQQVGKDFPVF--------LHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINA+ +G+ ID G+
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLQRRDLTINAIAYSAKGEYIDPYHGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
+D+ + ++ + ED LR+LR RF A + S+ + +
Sbjct: 114 DDIHAKLLRHV---SDAFSEDPLRVLRVARFAARFAPLGFTIAPETMSLMQEMTNSGELN 170
Query: 203 ----ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E K L ++ P ++ G K +F ++ + + E
Sbjct: 171 ALTAERVWKETEKALHSQAPQVYFEILHQCGALKILFPEINALFGVPAPKKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L + ++ ++ + + + + + E Y
Sbjct: 231 HTMMVLAMVSRLTDDIAVRFSALCHDL--GKGVTPVENWPHHHGHGPTGVPLVEALCQRY 288
Query: 319 LYGDKVM-IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+++ +AKL H + + I+++ I W+KP
Sbjct: 289 RIPNQIRDLAKLAAKYHDHLHRIERMRPSKIIRLFDAIDAWRKPE 333
>gi|78776206|ref|YP_392521.1| polynucleotide adenylyltransferase region [Sulfurimonas
denitrificans DSM 1251]
gi|78496746|gb|ABB43286.1| Polynucleotide adenylyltransferase region [Sulfurimonas
denitrificans DSM 1251]
Length = 411
Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats.
Identities = 88/413 (21%), Positives = 166/413 (40%), Gaps = 23/413 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIP 72
L I + L IVGG +RDSL+ L +DIDI ++ + K+
Sbjct: 7 ALDAIFNKLIMHNITPIIVGGFIRDSLLFLESKDIDIEVYGVSSFEILEEILEEFGKINI 66
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALY 128
S+G K++ D + R D + + D+K + RRDFTIN++
Sbjct: 67 VGKSFGVCKLMFVGYDLDFSLPRMDNKISSGHRGFNVKTYYKLDFKTATSRRDFTINSIG 126
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDG 186
D K++D G++DL+N+ ++ + +D LR+LR +F A + +
Sbjct: 127 YDVVSKKLLDPFYGIDDLKNKILRAVNL--ESFAQDPLRVLRAAQFCARFNLSIEYNLAI 184
Query: 187 LVASIKAKKGLKILSSERIWSEINKLL-EAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ + L L ER++ E KLL +++ P + G L++ +L
Sbjct: 185 TCKEMVSHALLAQLPKERVFEEFKKLLLKSQKPSIGFTLLREFG------LEIYSNNLYV 238
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ ++ + K + +L L K + + + + +E+ +I
Sbjct: 239 IDEIAKQLTTSS-KRNLVLMLAGLYYKAAKDGLELILNRLTDEKELCRDVIKLVEVYNYI 297
Query: 306 KTLSIPEIKKLF-YLYGDKVMIAKLKIFLA----LHYNNLTHQDTCFILQVLSDIIHWKK 360
+S+ I + F Y + I +L I + + ++ IL+ + +
Sbjct: 298 SLVSLDMIDEYFIYKLATMINIEELLILSSSIYYANNPQTIYKSGELILKKAKKLGVFTN 357
Query: 361 PLFPL-TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
L P+ G D++K G+ P + IL +E ++ F+ E + L R L
Sbjct: 358 KLTPILQGRDLIKNGVKPSIEFSKILNDAYEEQLHGKFKTYDEAIVWLKRYLK 410
>gi|227357324|ref|ZP_03841681.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Proteus
mirabilis ATCC 29906]
gi|227162587|gb|EEI47576.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Proteus
mirabilis ATCC 29906]
Length = 407
Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats.
Identities = 65/345 (18%), Positives = 126/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+NL V+D D P+ +++ + K P +
Sbjct: 2 KIYLVGGAVRDQLLNLPVKDRDWVVVGATPETLLQQGYQQVGKDFPVF--------LHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINA+ +G+ ID G+
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLQRRDLTINAIAYSAKGEYIDPYHGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
+D+ + ++ + ED LR+LR RF A + S+ + +
Sbjct: 114 DDIHAKLLRHV---SDAFSEDPLRVLRVARFAARFAPLGFTIAPETMSLMQEMTNSGELN 170
Query: 203 ----ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E K L ++ P ++ G K +F ++ + + E
Sbjct: 171 ALTAERVWKETEKALHSQAPQVYFEILHQCGALKILFPEINALFGVPAPKKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L + ++ ++ + + + + + E Y
Sbjct: 231 HTMMVLAMVSRLTDDIAVRFSALCHDL--GKGVTPVENWPHHHGHGPAGVPLVEALCQRY 288
Query: 319 LYGDKVM-IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+++ +AKL H + + I+++ I W+KP
Sbjct: 289 RIPNQIRDLAKLAAKYHDHLHRIEKMRPSKIIRLFDAIDAWRKPE 333
>gi|229102239|ref|ZP_04232948.1| CCA-adding enzyme [Bacillus cereus Rock3-28]
gi|228681140|gb|EEL35308.1| CCA-adding enzyme [Bacillus cereus Rock3-28]
Length = 346
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 66/345 (19%), Positives = 145/345 (42%), Gaps = 11/345 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RHVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++G+++D G ++ R I +G+A +R ED LR++R RF + G ++++
Sbjct: 66 IAMTEEGEMVDLFAGQEAIQKREIVTVGNAANRFQEDALRMMRGIRFVSTLGF-SLETKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + + F + ++ S+ KFS + + +K
Sbjct: 183 LKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRTRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ N + + + + ++
Sbjct: 243 DWDTV----LLYKTGIHIAEMAERVYEAM-IENYNPTSVKRVQSMFHALPIKGRQEMNVS 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G+D++ + PG V +L ++ + + +E + L++
Sbjct: 298 GNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKESIREWLQR 342
>gi|297816090|ref|XP_002875928.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321766|gb|EFH52187.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 610
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 58/290 (20%), Positives = 105/290 (36%), Gaps = 19/290 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L+ L +VGG VRD ++ + +D DI T+ V+R FS+
Sbjct: 74 MISKPTRLVLNGLKSKGYDVYLVGGCVRDLILKRTPKDFDILTSAELREVVRTFSRCEI- 132
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK---------VVFTRDWKADSLRR 120
+ + + ++++ + R + + L+R
Sbjct: 133 ---VGKRFPICHVHVGNEMIEVSSFSTSAQNSPRNMRTGSGKSNGSYDEDNTRLNNCLQR 189
Query: 121 DFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTIN L D + V DY+GG+ D++ I+ + A ED RILR R A G
Sbjct: 190 DFTINGLMFDPYAEVVYDYLGGIEDIKKAKIRTVFHAGTSFQEDCARILRGTRIAARLGF 249
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL--- 236
I + ++ L RI E+N +L + ++ ++ GI + +
Sbjct: 250 -TISKETAHFLKNLSFLVQRLHRGRILMEMNYMLAYGSAEASLRLLWKFGILEILLPIQA 308
Query: 237 -DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + + +D LL +IL++ K
Sbjct: 309 AYLVHTGFKRRDKRSNLLLSLFGNLDKLLAPDRPCHSSLWLTILALHKAL 358
>gi|307152170|ref|YP_003887554.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7822]
gi|306982398|gb|ADN14279.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7822]
Length = 412
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 73/402 (18%), Positives = 144/402 (35%), Gaps = 32/402 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQ--DIDIATTILPDRVM-RIFSKTRYKVIPTSISYGTIKIICR 85
+C+VGGAVRD+L+N D+D L I + +I+
Sbjct: 26 ACLVGGAVRDALLNRQRDYLDLDFVVPQLAVETAREIAKTCHAGFVILDQQRQIARIVFT 85
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLND 144
D ++D RRDFTINA+ + ++ID + GL D
Sbjct: 86 DATVDFAL--------------QEGETVESDLHRRDFTINAIAYNPHTSELIDPLNGLKD 131
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
L ++ + ++ + +D LR+LR +R A I+ L +++ER
Sbjct: 132 LEQGILRMVSQSN--LEDDPLRLLRAYRQAAQL-HLTIEPTTRSTIALLAPLLSQVAAER 188
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--------IEAEQVF 256
+ +E+ LL ++ + GI + ++ + L+Q+ + F
Sbjct: 189 VQTELGYLLSHPQGTYWLIEAWKDGILQPWLKNITSEKVQLLTQIEPSAQALQKHFNRQF 248
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTLSIPEIKK 315
+ D +L + + D + R + + Q+T + +++
Sbjct: 249 DRNQDLILAKLTCLVSGDSQVAELELMDLKYSRAEIRTVTTALKYLPELQQTPHLMSLRE 308
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYG 374
++ + + + LA+ + I + L P +TG+D++
Sbjct: 309 QYFFFLHCGKVFPIIAILAMAHGVEQKSLFPIIKRYLDPSDPVAHPQCLVTGNDLMRDLN 368
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ P +G +L + I E L + + L S Q
Sbjct: 369 LNPSPLIGQLLTEIQIAQIEQKIGTVDEAL-NFAQDLANSRQ 409
>gi|320195218|gb|EFW69847.1| tRNA nucleotidyltransferase [Escherichia coli WV_060327]
Length = 412
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 76/396 (19%), Positives = 143/396 (36%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDNNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGD-DVV- 371
+ + +A+L + + I+++ I W+KP LT + DV
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 372 -----KYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + +++ F+
Sbjct: 349 RAGFEAADYPQGRWLREAWEVAQSVPTKAVVDAGFK 384
>gi|229096127|ref|ZP_04227100.1| CCA-adding enzyme [Bacillus cereus Rock3-29]
gi|229115083|ref|ZP_04244493.1| CCA-adding enzyme [Bacillus cereus Rock1-3]
gi|228668223|gb|EEL23655.1| CCA-adding enzyme [Bacillus cereus Rock1-3]
gi|228687087|gb|EEL40992.1| CCA-adding enzyme [Bacillus cereus Rock3-29]
Length = 346
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 66/345 (19%), Positives = 145/345 (42%), Gaps = 11/345 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RHVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++G+++D G ++ R I +G+A +R ED LR++R RF + G ++++
Sbjct: 66 IAMTEEGEMVDLFAGQEAIQKREIVTVGNAANRFQEDALRMMRGIRFVSTLGF-SLETKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + + F + ++ S+ KFS + + +K
Sbjct: 183 LKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRTRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ N + + + + ++
Sbjct: 243 DWDTV----LLYKTGIHIAEMAERVYEAM-IENYNPTSVKRVQSMFHALPIKGRQDMNVS 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G+D++ + PG V +L ++ + + +E + L++
Sbjct: 298 GNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKESIREWLQR 342
>gi|206890174|ref|YP_002248303.1| tRNA nucleotidyltransferase/poly(A) polymerase [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742112|gb|ACI21169.1| tRNA nucleotidyltransferase/poly(A) polymerase [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 414
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 74/417 (17%), Positives = 144/417 (34%), Gaps = 32/417 (7%)
Query: 11 HDSDLINILSLLNKGE--DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTR 67
+ ++ L + + S +VGG+VRD L+ ++DID A + + F K
Sbjct: 7 ENKYFNEVVKFLQEKKLYQNSYLVGGSVRDLLLKRDLKDIDFAIKGDSIDLAKEFSRKIG 66
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + +++ D L + + D RDFTINA+
Sbjct: 67 GTFVLLDEVFSIGRVVKDNVTIDFAQLSGE--------------SIETDLSERDFTINAM 112
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D K + G + + + + D LRILR +RF A +I+++
Sbjct: 113 ATDLSLKNLIDPFGGMEDLKNRLIKM-VKEENLKADPLRILRAYRFHATVNF-DIENNTR 170
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL---- 243
A K +K+ + ERI E+ K+L N + M IFK F + +
Sbjct: 171 EALKKNAFLMKVTAKERIKEELWKILSVDNSARTVEMMVEDEIFKAFFKMPDLLQIRPNL 230
Query: 244 -------DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ L + + + + + + LS K+ ++ F+
Sbjct: 231 QVLIIIEEALRNPEKIFTHHKITFNPNIIACLKFTGIFGHHALSFIKQIKPSKKEERFVE 290
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ K + K F + V+ L ++ + ++ +
Sbjct: 291 KLIEAGVSIKKVETLLDKVRFVKNYENVLYPALIYGISTDPLGMARAWFYREIENFYKKV 350
Query: 357 HWKKPL--FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+ K + G+D++ G P VG I+ + + +E L + R+
Sbjct: 351 YLKNKKKLPLIKGEDILSLGFEPSPLVGEIIERIETLVLAGKISKKEEALEEIKRRY 407
>gi|301021846|ref|ZP_07185809.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 69-1]
gi|331664669|ref|ZP_08365575.1| multifunctional CCA protein [Escherichia coli TA143]
gi|300397862|gb|EFJ81400.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 69-1]
gi|331058600|gb|EGI30581.1| multifunctional CCA protein [Escherichia coli TA143]
Length = 412
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 78/412 (18%), Positives = 145/412 (35%), Gaps = 39/412 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQLSQEDLHHLLRKLIAS 414
P G+ + + + + + F+ E L R+ IA+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK-GAEIREELTRRRIAA 399
>gi|170077940|ref|YP_001734578.1| polyA polymerase family protein [Synechococcus sp. PCC 7002]
gi|169885609|gb|ACA99322.1| polyA polymerase family protein [Synechococcus sp. PCC 7002]
Length = 900
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 81/428 (18%), Positives = 142/428 (33%), Gaps = 39/428 (9%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLM-----NLSVQDIDIATTI--LPDRVMR------ 61
L + + K +VGGAVRD L+ L +QDID+ V
Sbjct: 470 LQGVATEAEKRGWHLYLVGGAVRDVLLSDSDEELLLQDIDLVVDGFHTAADVGAGVTLAN 529
Query: 62 -IFSKTRYKVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWK 114
I + + + T I+ K + DI T R++ V +
Sbjct: 530 YICDRQPNARLSVHGEFQTAAILWHKDPVLGSLWLDIATARTEFYPYPAANPEVEASSIR 589
Query: 115 ADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170
D RRDF+INAL + G+++D+ GGL DL+ R I+ + + +ED RI R
Sbjct: 590 QDLYRRDFSINALCLRLTEPRSGELLDFFGGLWDLKKRQIRVLHA--NSFIEDPTRIYRA 647
Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI----------WSEINKLLEAKNPLN 220
RF + G+ +E+ LL AK
Sbjct: 648 VRFAVRLNFQLEVQTEEYIRYAIASGIYDKLHHEKPQAPALTTRLRAELKYLLTAKYWKP 707
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
A+ + + G K I ++ + D L +L ++ +
Sbjct: 708 ALQLLDDLGALKCIHKNLALTDAVWWQIRCVDRWLRYHDPDYELEHWLLRLEGLLLNLTT 767
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM-IAKLKIFLALHYNN 339
+ R +Q I +KV + L + +
Sbjct: 768 EERLKVGDRLQLPKDSLQRLEAISQHEAQILPKLFQATKLSEKVFALKHLSLPEIILLAA 827
Query: 340 LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399
++ + + + W+ PL G D+ + G PG + +IL ++ ++ +
Sbjct: 828 ISPKKMRH--DLWHYLRRWQFIQAPLNGFDLKELGYKPGPQFRDILSDLLKQTLDQNIGD 885
Query: 400 SQEDLHHL 407
L +L
Sbjct: 886 RPSALAYL 893
>gi|332199601|gb|EGJ13676.1| poly A polymerase head domain protein [Streptococcus pneumoniae
GA41317]
Length = 325
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 77/333 (23%), Positives = 142/333 (42%), Gaps = 13/333 (3%)
Query: 81 KIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138
++ + +++TT R++ + R + V F R + D RRDFT+NA D+ G+++D
Sbjct: 1 MVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETGEIVDL 60
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198
GL DL + ++ +G A R ED LRI+R FRF A G ++ + A L+
Sbjct: 61 FHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKTLTPLLE 119
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+S ER + E +KLL A + M +L S D+L+++ + E F +
Sbjct: 120 KISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDLETDFTF 177
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ S + L+ + ++ S K + R+ + ++ + + +
Sbjct: 178 E-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSKRDCYRF 236
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPP 377
I L L + I + + K + GD ++K YG P
Sbjct: 237 D------IDLLLQAENLRQARGKEVNPQAITEKYQSLTIHDKKEIQINGDILIKEYGYQP 290
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G +G IL + ++ + ++E +H LR+
Sbjct: 291 GPDLGEILTEIEFAIVDGELENNREAIHAYLRE 323
>gi|197116551|ref|YP_002136978.1| nucleic acid-independent polyadenylating polymerase [Geobacter
bemidjiensis Bem]
gi|197085911|gb|ACH37182.1| nucleic acid-independent polyadenylating polymerase [Geobacter
bemidjiensis Bem]
Length = 481
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 60/283 (21%), Positives = 104/283 (36%), Gaps = 58/283 (20%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + L L + + +VGG VRD L+ +D D+ T P ++ ++F R
Sbjct: 23 SPNAVKTLYKLKEQGFTAYLVGGGVRDLLLGREPKDFDVVTDATPAQLKKMFRNCRL--- 79
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------------------------------- 100
+ + + ++ T RS +
Sbjct: 80 -IGRRFRLAHLHFHDEIIEVATFRSTVDPSAEAPAEETAEAPSEAAQELPQETVVEAKLL 138
Query: 101 ---------------------DGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDY 138
DG + + D++RRDFT+NAL+ + +ID+
Sbjct: 139 EEEREGRRRRGHHGPSMLKSEDGMVLRDNVFGTPEEDAVRRDFTVNALFYNIADFSIIDH 198
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198
VGG+ DL+ I+ IGD R ED +R++R RF + G NI+ A + +
Sbjct: 199 VGGMEDLKQGLIRTIGDPLVRFTEDPVRMIRAIRFASMLGF-NIEERTEAAIEELCGTIN 257
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ R++ E+ KLL M + G+F +F
Sbjct: 258 KATPPRLYEEVLKLLLLGAGERTYQMMRHSGLFAPLFPHFDAW 300
>gi|284923084|emb|CBG36177.1| multifunctional Cca protein [includes: tRNA nucleotidyltransferase;
2'-nucleotidase; 2',3'-cyclic phosphodiesterase;
phosphatase] [Escherichia coli 042]
Length = 412
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 138/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RMPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|148984905|ref|ZP_01818158.1| predicted S-transferase [Streptococcus pneumoniae SP3-BS71]
gi|147922927|gb|EDK74043.1| predicted S-transferase [Streptococcus pneumoniae SP3-BS71]
gi|332073894|gb|EGI84372.1| poly A polymerase head domain protein [Streptococcus pneumoniae
GA41301]
gi|332200997|gb|EGJ15068.1| poly A polymerase head domain protein [Streptococcus pneumoniae
GA47901]
Length = 325
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 77/333 (23%), Positives = 142/333 (42%), Gaps = 13/333 (3%)
Query: 81 KIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138
++ + +++TT R++ + R + V F R + D RRDFT+NA D+ G+++D
Sbjct: 1 MVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETGEIVDL 60
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198
GL DL + ++ +G A R ED LRI+R FRF A G ++ + A L+
Sbjct: 61 FHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKTLTPLLE 119
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+S ER + E +KLL A + M +L S D+L+++ + E F +
Sbjct: 120 KISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDLETDFTF 177
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ S + L+ + ++ S K + R+ + ++ + + +
Sbjct: 178 E-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSKRDCYRF 236
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPP 377
I L L + I + + K + GD ++K YG P
Sbjct: 237 D------IDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEIQINGDILIKEYGYQP 290
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G +G IL + ++ + ++E +H LR+
Sbjct: 291 GPDLGEILTEIEFAIVDGELENNREAIHAYLRE 323
>gi|312968601|ref|ZP_07782810.1| poly A polymerase head domain protein [Escherichia coli 2362-75]
gi|312286819|gb|EFR14730.1| poly A polymerase head domain protein [Escherichia coli 2362-75]
Length = 412
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 140/396 (35%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L + ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMVAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RMPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|26249637|ref|NP_755677.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli CFT073]
gi|227887779|ref|ZP_04005584.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli 83972]
gi|300973244|ref|ZP_07172083.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 45-1]
gi|301048108|ref|ZP_07195146.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 185-1]
gi|73619769|sp|Q8CXX6|CCA_ECOL6 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|26110065|gb|AAN82251.1|AE016767_11 tRNA nucleotidyltransferase [Escherichia coli CFT073]
gi|227835175|gb|EEJ45641.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli 83972]
gi|300300028|gb|EFJ56413.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 185-1]
gi|300410824|gb|EFJ94362.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 45-1]
gi|307555163|gb|ADN47938.1| multifunctional CCA protein [Escherichia coli ABU 83972]
gi|315295022|gb|EFU54359.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 153-1]
Length = 412
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 140/396 (35%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEILDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|255320863|ref|ZP_05362037.1| poly(A) polymerase [Acinetobacter radioresistens SK82]
gi|262380244|ref|ZP_06073399.1| poly(A) polymerase I [Acinetobacter radioresistens SH164]
gi|255302032|gb|EET81275.1| poly(A) polymerase [Acinetobacter radioresistens SK82]
gi|262298438|gb|EEY86352.1| poly(A) polymerase I [Acinetobacter radioresistens SH164]
Length = 483
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 57/279 (20%), Positives = 123/279 (44%), Gaps = 10/279 (3%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S +++++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + +
Sbjct: 18 SSILDVIESLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKDVFGRRCRIIG- 76
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + ++ ++ T R+ G + + D RRDF+INAL
Sbjct: 77 --RRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGSIEQDFSRRDFSINAL 134
Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y ++ D+ + D++N+T++ +GD R ED +R+LR RF A K +
Sbjct: 135 YYQPHKGIVLDFCDAVQDIKNKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFKIDPAIL 194
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + + + L+ +S R++ E KL + + + + I+K++F D++ ++
Sbjct: 195 KIFTAELAQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIDFDIWKQLFADIRP-NITAF 253
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
++ +I + + + L + +
Sbjct: 254 IELAAKNTDHRIQIGKTINPAFFYAVLLWEPFLERYEFY 292
>gi|222034788|emb|CAP77530.1| Multifunctional CCA protein [Escherichia coli LF82]
gi|312947627|gb|ADR28454.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli O83:H1 str. NRG 857C]
Length = 412
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 139/396 (35%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDNNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|16130952|ref|NP_417528.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Escherichia coli str. K-12 substr. MG1655]
gi|89109826|ref|AP_003606.1| fused tRNA nucleotidyl transferase and 2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli str. K-12 substr. W3110]
gi|157162529|ref|YP_001459847.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli HS]
gi|170018692|ref|YP_001723646.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli ATCC 8739]
gi|170082599|ref|YP_001731919.1| fused tRNA nucleotidyl transferase; 2'3'-cyclic phosphodiesterase
and 2'nucleotidase and phosphatase [Escherichia coli
str. K-12 substr. DH10B]
gi|188492602|ref|ZP_02999872.1| multifunctional CCA protein [Escherichia coli 53638]
gi|194436695|ref|ZP_03068795.1| multifunctional CCA protein [Escherichia coli 101-1]
gi|218706681|ref|YP_002414200.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli UMN026]
gi|238902167|ref|YP_002927963.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Escherichia coli BW2952]
gi|253772108|ref|YP_003034939.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254038224|ref|ZP_04872282.1| multifunctional CCA protein [Escherichia sp. 1_1_43]
gi|254163003|ref|YP_003046111.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli B str. REL606]
gi|293406669|ref|ZP_06650595.1| multifunctional CCA protein [Escherichia coli FVEC1412]
gi|297520636|ref|ZP_06939022.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli OP50]
gi|300901437|ref|ZP_07119522.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 198-1]
gi|300905805|ref|ZP_07123539.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 84-1]
gi|300917407|ref|ZP_07134073.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 115-1]
gi|300931940|ref|ZP_07147237.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 187-1]
gi|300950736|ref|ZP_07164624.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 116-1]
gi|300958441|ref|ZP_07170580.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 175-1]
gi|301301904|ref|ZP_07208038.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 124-1]
gi|301644751|ref|ZP_07244726.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 146-1]
gi|307139744|ref|ZP_07499100.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli H736]
gi|312972681|ref|ZP_07786854.1| poly A polymerase head domain protein [Escherichia coli 1827-70]
gi|331643754|ref|ZP_08344885.1| multifunctional CCA protein [Escherichia coli H736]
gi|115939|sp|P06961|CCA_ECOLI RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|167006456|sp|A8A4L0|CCA_ECOHS RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|189081873|sp|B1IRR0|CCA_ECOLC RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702051|sp|B1XG61|CCA_ECODH RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702052|sp|B7ND45|CCA_ECOLU RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|259585841|sp|C4ZQX3|CCA_ECOBW RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|145468|gb|AAA23541.1| tRNA nucleotidyltransferase [Escherichia coli]
gi|882578|gb|AAA89136.1| CG Site No. 933 [Escherichia coli str. K-12 substr. MG1655]
gi|1789436|gb|AAC76092.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Escherichia coli str. K-12 substr. MG1655]
gi|85675857|dbj|BAE77107.1| fused tRNA nucleotidyl transferase and 2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli str. K12 substr. W3110]
gi|157068209|gb|ABV07464.1| multifunctional CCA protein [Escherichia coli HS]
gi|169753620|gb|ACA76319.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Escherichia coli ATCC 8739]
gi|169890434|gb|ACB04141.1| fused tRNA nucleotidyl transferase; 2'3'-cyclic phosphodiesterase
and 2'nucleotidase and phosphatase [Escherichia coli
str. K-12 substr. DH10B]
gi|188487801|gb|EDU62904.1| multifunctional CCA protein [Escherichia coli 53638]
gi|194424177|gb|EDX40164.1| multifunctional CCA protein [Escherichia coli 101-1]
gi|218433778|emb|CAR14695.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase
and 2'nucleotidase and phosphatase [Escherichia coli
UMN026]
gi|226839848|gb|EEH71869.1| multifunctional CCA protein [Escherichia sp. 1_1_43]
gi|238861261|gb|ACR63259.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Escherichia coli BW2952]
gi|242378606|emb|CAQ33393.1| fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase
/ 2' nucleotidase and phosphatase [Escherichia coli
BL21(DE3)]
gi|253323152|gb|ACT27754.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253974904|gb|ACT40575.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Escherichia coli B str. REL606]
gi|253979060|gb|ACT44730.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Escherichia coli BL21(DE3)]
gi|260447908|gb|ACX38330.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Escherichia coli DH1]
gi|291426675|gb|EFE99707.1| multifunctional CCA protein [Escherichia coli FVEC1412]
gi|300314882|gb|EFJ64666.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 175-1]
gi|300355139|gb|EFJ71009.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 198-1]
gi|300402404|gb|EFJ85942.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 84-1]
gi|300415364|gb|EFJ98674.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 115-1]
gi|300449973|gb|EFK13593.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 116-1]
gi|300460363|gb|EFK23856.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 187-1]
gi|300842885|gb|EFK70645.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 124-1]
gi|301076905|gb|EFK91711.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 146-1]
gi|309703487|emb|CBJ02827.1| multifunctional Cca protein [includes: tRNA nucleotidyltransferase;
2'-nucleotidase; 2',3'-cyclic phosphodiesterase;
phosphatase] [Escherichia coli ETEC H10407]
gi|310332623|gb|EFP99836.1| poly A polymerase head domain protein [Escherichia coli 1827-70]
gi|315137650|dbj|BAJ44809.1| multifunctional CCA protein [Escherichia coli DH1]
gi|315256967|gb|EFU36935.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 85-1]
gi|315617128|gb|EFU97737.1| poly A polymerase head domain protein [Escherichia coli 3431]
gi|323935942|gb|EGB32237.1| poly A polymerase head domain-containing protein [Escherichia coli
E1520]
gi|323941846|gb|EGB38025.1| poly A polymerase head domain-containing protein [Escherichia coli
E482]
gi|323960974|gb|EGB56592.1| poly A polymerase head domain-containing protein [Escherichia coli
H489]
gi|323971821|gb|EGB67046.1| poly A polymerase head domain-containing protein [Escherichia coli
TA007]
gi|331037225|gb|EGI09449.1| multifunctional CCA protein [Escherichia coli H736]
gi|332345010|gb|AEE58344.1| poly A polymerase head protein [Escherichia coli UMNK88]
Length = 412
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 138/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|215488387|ref|YP_002330818.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli O127:H6 str. E2348/69]
gi|254813691|sp|B7UIW4|CCA_ECO27 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|215266459|emb|CAS10897.1| fused tRNA nucleotidyl
transferase/2'3'-cyclicphosphodiesterase/2'nucleotidase
and phosphatase [Escherichia coli O127:H6 str. E2348/69]
Length = 412
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 140/396 (35%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L + ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMVAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|291284435|ref|YP_003501253.1| TRNA nucleotidyltransferase [Escherichia coli O55:H7 str. CB9615]
gi|209759338|gb|ACI77981.1| tRNA nucleotidyl transferase [Escherichia coli]
gi|209759344|gb|ACI77984.1| tRNA nucleotidyl transferase [Escherichia coli]
gi|290764308|gb|ADD58269.1| TRNA nucleotidyltransferase [Escherichia coli O55:H7 str. CB9615]
gi|320645427|gb|EFX14436.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli O157:H- str. 493-89]
gi|320650738|gb|EFX19195.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli O157:H- str. H 2687]
gi|320656116|gb|EFX24028.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320661806|gb|EFX29214.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli O55:H7 str. USDA 5905]
gi|320666957|gb|EFX33933.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli O157:H7 str. LSU-61]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 72/396 (18%), Positives = 137/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|323188500|gb|EFZ73785.1| poly A polymerase head domain protein [Escherichia coli RN587/1]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 138/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPHHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|209920527|ref|YP_002294611.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli SE11]
gi|226702053|sp|B6I427|CCA_ECOSE RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|209913786|dbj|BAG78860.1| tRNA nucleotidyltransferase [Escherichia coli SE11]
gi|324018179|gb|EGB87398.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 117-3]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 139/396 (35%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHEGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|22298062|ref|NP_681309.1| polyA polymerase [Thermosynechococcus elongatus BP-1]
gi|22294240|dbj|BAC08071.1| tll0519 [Thermosynechococcus elongatus BP-1]
Length = 907
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 71/453 (15%), Positives = 155/453 (34%), Gaps = 53/453 (11%)
Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLM-------NLSVQDIDIATTIL 55
+ + W + L ++ + + +VGGAVRD L+ +L ++ D+ +
Sbjct: 453 RLPEQLW---TLLQRASAIARERGWQLYLVGGAVRDLLLAIAQGNHHLPTREFDLVVDGV 509
Query: 56 PDRVMR--IFSKTRYKVIP-----TSISYGTIKIICR------KKYFDITTLRSDLITDG 102
++ + + P + T + DI T RS+
Sbjct: 510 QQEEAAGVHLAQALHALYPETDLQIYGQFQTAALHWPKASPLAGFAVDIATARSEFYPYP 569
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHH 158
V + D RRDFTINAL + G+V+D+ GG DL I+ + +
Sbjct: 570 AAHPEVAASSIRQDLYRRDFTINALAMRLTPPRHGEVLDFFGGQEDLERGLIRVLHP--N 627
Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218
+ED RI R RF G + G+ + + +N
Sbjct: 628 SFIEDPTRIFRAVRFAVRLGFEVEPQSRQYIEYALTSGVFVTRDRPTSKRPSLQSRLRNE 687
Query: 219 LNAIVHMYNGGIFKEI-----FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQ 273
L ++ + L + +L+ L + + ++ + ++ + ++ I +
Sbjct: 688 LRHLLELPLAPNEHFGGERALTLLAELGALECLDRQVTFDEGAKVRLQLVWQWWPEIPER 747
Query: 274 DKKSIL------------------SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++A++ L + +L +F +TL ++
Sbjct: 748 REWQTFPLWELELLALIVTVPTAGAIARQLQLGEHLCEWLDTFPQFQQEWQTLRQTTPQR 807
Query: 316 LFYL-YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374
Y + + + + + A+ + + + W+ PL G D+ + G
Sbjct: 808 SHYWAFLESHPLPLIVLLAAVLQAEGRAPALAEVTLLREYLWQWRVQKLPLNGHDLQQLG 867
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
P G ++ IL+ + ++ + ++
Sbjct: 868 YPRGPQLRQILLALRSAMLDGLVSDRPSAIAYV 900
>gi|191172534|ref|ZP_03034074.1| multifunctional CCA protein [Escherichia coli F11]
gi|300977454|ref|ZP_07173917.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 200-1]
gi|190907202|gb|EDV66801.1| multifunctional CCA protein [Escherichia coli F11]
gi|300308312|gb|EFJ62832.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 200-1]
gi|324011997|gb|EGB81216.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 60-1]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 139/396 (35%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|82545310|ref|YP_409257.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Shigella
boydii Sb227]
gi|187731005|ref|YP_001881819.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Shigella
boydii CDC 3083-94]
gi|193062212|ref|ZP_03043308.1| multifunctional CCA protein [Escherichia coli E22]
gi|193067390|ref|ZP_03048358.1| multifunctional CCA protein [Escherichia coli E110019]
gi|194426481|ref|ZP_03059036.1| multifunctional CCA protein [Escherichia coli B171]
gi|218555626|ref|YP_002388539.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli IAI1]
gi|256019028|ref|ZP_05432893.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Shigella
sp. D9]
gi|260845810|ref|YP_003223588.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Escherichia coli O103:H2 str. 12009]
gi|293449394|ref|ZP_06663815.1| multifunctional CCA protein [Escherichia coli B088]
gi|300818821|ref|ZP_07099027.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 107-1]
gi|300821649|ref|ZP_07101795.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 119-7]
gi|331679132|ref|ZP_08379804.1| multifunctional CCA protein [Escherichia coli H591]
gi|332280128|ref|ZP_08392541.1| tRNA nucleotidyl transferase [Shigella sp. D9]
gi|123558762|sp|Q31WX9|CCA_SHIBS RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702050|sp|B7LZK6|CCA_ECO8A RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702086|sp|B2U1G0|CCA_SHIB3 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|81246721|gb|ABB67429.1| tRNA nucleotidyl transferase [Shigella boydii Sb227]
gi|187427997|gb|ACD07271.1| multifunctional CCA protein [Shigella boydii CDC 3083-94]
gi|192932432|gb|EDV85030.1| multifunctional CCA protein [Escherichia coli E22]
gi|192959347|gb|EDV89782.1| multifunctional CCA protein [Escherichia coli E110019]
gi|194415789|gb|EDX32056.1| multifunctional CCA protein [Escherichia coli B171]
gi|218362394|emb|CAR00018.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase
and 2'nucleotidase and phosphatase [Escherichia coli
IAI1]
gi|257760957|dbj|BAI32454.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Escherichia coli O103:H2 str. 12009]
gi|291322484|gb|EFE61913.1| multifunctional CCA protein [Escherichia coli B088]
gi|300525787|gb|EFK46856.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 119-7]
gi|300528606|gb|EFK49668.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 107-1]
gi|320174938|gb|EFW50055.1| tRNA nucleotidyltransferase [Shigella dysenteriae CDC 74-1112]
gi|320179303|gb|EFW54261.1| tRNA nucleotidyltransferase [Shigella boydii ATCC 9905]
gi|320187121|gb|EFW61824.1| tRNA nucleotidyltransferase [Shigella flexneri CDC 796-83]
gi|323163106|gb|EFZ48939.1| poly A polymerase head domain protein [Escherichia coli E128010]
gi|323173699|gb|EFZ59328.1| poly A polymerase head domain protein [Escherichia coli LT-68]
gi|323183639|gb|EFZ69036.1| poly A polymerase head domain protein [Escherichia coli 1357]
gi|324119664|gb|EGC13545.1| poly A polymerase head domain-containing protein [Escherichia coli
E1167]
gi|331073197|gb|EGI44520.1| multifunctional CCA protein [Escherichia coli H591]
gi|332086714|gb|EGI91854.1| poly A polymerase head domain protein [Shigella boydii 5216-82]
gi|332091836|gb|EGI96914.1| poly A polymerase head domain protein [Shigella boydii 3594-74]
gi|332102480|gb|EGJ05826.1| tRNA nucleotidyl transferase [Shigella sp. D9]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 72/396 (18%), Positives = 137/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|332072349|gb|EGI82832.1| poly A polymerase head domain protein [Streptococcus pneumoniae
GA17570]
Length = 325
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 77/333 (23%), Positives = 142/333 (42%), Gaps = 13/333 (3%)
Query: 81 KIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138
++ + +++TT R++ + R + V F R + D RRDFT+NA D+ G+++D
Sbjct: 1 MVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETGEIVDL 60
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198
GL DL + ++ +G A R ED LRI+R FRF A G ++ + A L+
Sbjct: 61 FHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKTLTPLLE 119
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+S ER + E +KLL A + M +L S D+L+++ + E F +
Sbjct: 120 KISVERTFVEFDKLLLAPFWRRGLASMIESQA--YDYLPDMASSQDKLNRLFDLETDFTF 177
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ S + L+ + ++ S K + R+ + ++ + + +
Sbjct: 178 E-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSKRDCYRF 236
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPP 377
I L L + I + + K + GD ++K YG P
Sbjct: 237 D------IDLLLQAENLRQAQGKEVNLQAITEKYQSLTIHDKKEIQINGDILIKEYGYQP 290
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G +G IL + ++ + ++E +H LR+
Sbjct: 291 GPDLGEILTEIEFAIVDGELENNREAIHAYLRE 323
>gi|281180110|dbj|BAI56440.1| tRNA nucleotidyltransferase [Escherichia coli SE15]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 139/396 (35%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVSLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|331648857|ref|ZP_08349945.1| multifunctional CCA protein [Escherichia coli M605]
gi|330909122|gb|EGH37636.1| tRNA nucleotidyltransferase [Escherichia coli AA86]
gi|331042604|gb|EGI14746.1| multifunctional CCA protein [Escherichia coli M605]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 139/396 (35%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|16331730|ref|NP_442458.1| polyA polymerase [Synechocystis sp. PCC 6803]
gi|1001282|dbj|BAA10528.1| polyA polymerase [Synechocystis sp. PCC 6803]
Length = 416
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 77/410 (18%), Positives = 146/410 (35%), Gaps = 41/410 (10%)
Query: 28 KSCIVGGAVRDSLMN--LSVQDIDIATTILPDRVM-RIFSKTRYKVIPTSISYGTIKIIC 84
++C+VGGAVRD+L+ D D I S+ R + + +++
Sbjct: 25 QACLVGGAVRDALLGRRREYLDWDFVVPSGAIETASAIASRYRAGFVVLDKARHIARVVF 84
Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLN 143
D + D RRDFT+NA+ + Q ID + G+
Sbjct: 85 AHGTVDFA--------------QQEGMSLEQDLARRDFTVNAIAYNFQQNKLIDPMAGVG 130
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203
DL+ +K + + + +D LR+LR +R A + +D D + +K +++E
Sbjct: 131 DLQRGQLKMVAAVN--LADDPLRLLRAYRQAAQL-QFTLDPDTRTVLRELAPRIKTVAAE 187
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-------------FLDVQEISLDQLSQVI 250
R+ +E N LL + ++ + GI +D+ ++ ++
Sbjct: 188 RVQAEFNYLLGSPRGSQWLLAAWQDGILAHWFSHANLSSLNAIGCIDLAIAAIKNQLTLV 247
Query: 251 EAEQVFEW--KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
E +Q F+ K + + + D K ++ R + + L
Sbjct: 248 ERQQFFQALGKKGIAIAKLASLVCADVKIAEGELQRLKYSRHELRSVQAILQGYPQLSCL 307
Query: 309 SIPEIKKLFYLYGDKV---MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ Y + ++ + + LA +N + L+ P +
Sbjct: 308 ENSPTVRQLYFFFVELGKYLPHFVLYALAHCPHNYHSFIFELLTHYLNSGDRLAHPQPLI 367
Query: 366 TGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
TG D++ K I P +G +L I QE L ++L S
Sbjct: 368 TGKDLIDKLHIKPSPLIGQLLTEINIAHIEGKISNEQEAL-AYAQELGKS 416
>gi|301021239|ref|ZP_07185271.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 196-1]
gi|299881597|gb|EFI89808.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 196-1]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 74/396 (18%), Positives = 138/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ I ED LR+LR RF A Y + + L+
Sbjct: 114 GDLQNRLLRHI---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|293412433|ref|ZP_06655156.1| phosphatase [Escherichia coli B354]
gi|293416495|ref|ZP_06659134.1| multifunctional CCA protein [Escherichia coli B185]
gi|291431851|gb|EFF04834.1| multifunctional CCA protein [Escherichia coli B185]
gi|291469204|gb|EFF11695.1| phosphatase [Escherichia coli B354]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 138/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|306816590|ref|ZP_07450722.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli NC101]
gi|331684707|ref|ZP_08385299.1| multifunctional CCA protein [Escherichia coli H299]
gi|305850155|gb|EFM50614.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli NC101]
gi|331078322|gb|EGI49528.1| multifunctional CCA protein [Escherichia coli H299]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 139/396 (35%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|296272189|ref|YP_003654820.1| polynucleotide adenylyltransferase region [Arcobacter nitrofigilis
DSM 7299]
gi|296096364|gb|ADG92314.1| Polynucleotide adenylyltransferase region [Arcobacter nitrofigilis
DSM 7299]
Length = 467
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 75/453 (16%), Positives = 142/453 (31%), Gaps = 57/453 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT--TILPDRVMRIFSKTRYKVIP 72
L IL LL + K +VGG VRD +NL ++D DI + + + + KV
Sbjct: 17 LTKILKLLQEKGAKPILVGGCVRDHFLNLEIKDYDIEVFHIEDFETLTKYLEQFG-KVKL 75
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALY 128
SYG +K+ K+ +D R + + +K ++RRDFTINAL
Sbjct: 76 VGKSYGVLKLSVDKQEYDFALPRVEKKIAKGHKGFEVISNSYLSFKEAAIRRDFTINALG 135
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG 186
D + I G + + +ED LR+ R +F + + D
Sbjct: 136 YDFINEEILDPFGGLEDLENKTLR-HIDDNSFIEDPLRVYRAVQFASRFDFTLDEKSFDL 194
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF----------- 235
+ ++ + L++ P + GI K
Sbjct: 195 CKKMVSNNDLEELANERIFEELKKLFLKSTKPSVGFELLKELGILKYYPELKALIGCEQE 254
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK------------ 283
+ + ++ +++ + K + + +VL
Sbjct: 255 PEYHPEGDVWIHTLMCLDEMAKIKTNDEYKDLVLFFAILCHDFGKPLCTKVIDGKITSHK 314
Query: 284 --------------KFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLFYLYGDKVMIAK 328
K + +++ ++ + + L + K KV I
Sbjct: 315 HESLGIEPTVSFLEKLTNDKKLIADILPLVKYHLSPFQLYLHNSSDKAVKRLALKVDIEM 374
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKK--------PLFPLTGDDVVKYGIPPGKK 380
L + T +D C + +S + + P + G D++ G PG
Sbjct: 375 LCLVCLADCLGRTIEDKCKCHEAISWLKNKASQLEVTNSGPKAIVMGKDLITLGFTPGVL 434
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
IL + ++ + + K I
Sbjct: 435 FKEILDYAFDLQLDEDLP-KDLIIEKIKEKYIK 466
>gi|170680641|ref|YP_001745328.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli SMS-3-5]
gi|331674598|ref|ZP_08375358.1| multifunctional CCA protein [Escherichia coli TA280]
gi|226702054|sp|B1LF48|CCA_ECOSM RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|170518359|gb|ACB16537.1| multifunctional CCA protein [Escherichia coli SMS-3-5]
gi|331068692|gb|EGI40087.1| multifunctional CCA protein [Escherichia coli TA280]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 138/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|15803598|ref|NP_289631.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli O157:H7 EDL933]
gi|15833193|ref|NP_311966.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli O157:H7 str. Sakai]
gi|168754024|ref|ZP_02779031.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4401]
gi|168760215|ref|ZP_02785222.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4501]
gi|168767077|ref|ZP_02792084.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4486]
gi|168773289|ref|ZP_02798296.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4196]
gi|168781930|ref|ZP_02806937.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4076]
gi|168785928|ref|ZP_02810935.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC869]
gi|168797645|ref|ZP_02822652.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC508]
gi|195937200|ref|ZP_03082582.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli O157:H7 str. EC4024]
gi|208808678|ref|ZP_03251015.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4206]
gi|208814145|ref|ZP_03255474.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4045]
gi|208820792|ref|ZP_03261112.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4042]
gi|209396575|ref|YP_002272529.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4115]
gi|217327265|ref|ZP_03443348.1| multifunctional CCA protein [Escherichia coli O157:H7 str. TW14588]
gi|254795007|ref|YP_003079844.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli O157:H7 str. TW14359]
gi|261228068|ref|ZP_05942349.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic
phosphodiesterase, 2'-nucleotidase, and phosphatase
[Escherichia coli O157:H7 str. FRIK2000]
gi|261254924|ref|ZP_05947457.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic
phosphodiesterase, 2'-nucleotidase, and phosphatase
[Escherichia coli O157:H7 str. FRIK966]
gi|73619767|sp|Q8XBL4|CCA_ECO57 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702048|sp|B5YR96|CCA_ECO5E RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|12517635|gb|AAG58190.1|AE005535_2 tRNA nucleotidyl transferase [Escherichia coli O157:H7 str. EDL933]
gi|13363412|dbj|BAB37362.1| tRNA nucleotidyl transferase [Escherichia coli O157:H7 str. Sakai]
gi|187770782|gb|EDU34626.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4196]
gi|189000523|gb|EDU69509.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4076]
gi|189358420|gb|EDU76839.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4401]
gi|189363839|gb|EDU82258.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4486]
gi|189369210|gb|EDU87626.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4501]
gi|189374110|gb|EDU92526.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC869]
gi|189379862|gb|EDU98278.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC508]
gi|208728479|gb|EDZ78080.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4206]
gi|208735422|gb|EDZ84109.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4045]
gi|208740915|gb|EDZ88597.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4042]
gi|209157975|gb|ACI35408.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4115]
gi|209759340|gb|ACI77982.1| tRNA nucleotidyl transferase [Escherichia coli]
gi|209759342|gb|ACI77983.1| tRNA nucleotidyl transferase [Escherichia coli]
gi|209759346|gb|ACI77985.1| tRNA nucleotidyl transferase [Escherichia coli]
gi|217319632|gb|EEC28057.1| multifunctional CCA protein [Escherichia coli O157:H7 str. TW14588]
gi|254594407|gb|ACT73768.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic
phosphodiesterase, 2'-nucleotidase, and phosphatase
[Escherichia coli O157:H7 str. TW14359]
gi|320189407|gb|EFW64066.1| tRNA nucleotidyltransferase [Escherichia coli O157:H7 str. EC1212]
gi|320640129|gb|EFX09701.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli O157:H7 str. G5101]
gi|326337759|gb|EGD61593.1| tRNA nucleotidyltransferase [Escherichia coli O157:H7 str. 1125]
gi|326347324|gb|EGD71049.1| tRNA nucleotidyltransferase [Escherichia coli O157:H7 str. 1044]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 72/396 (18%), Positives = 137/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFTTLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|300937461|ref|ZP_07152287.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 21-1]
gi|300457496|gb|EFK20989.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 21-1]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 138/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|194431615|ref|ZP_03063906.1| multifunctional CCA protein [Shigella dysenteriae 1012]
gi|194419971|gb|EDX36049.1| multifunctional CCA protein [Shigella dysenteriae 1012]
gi|332086935|gb|EGI92070.1| poly A polymerase head domain protein [Shigella dysenteriae 155-74]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 71/396 (17%), Positives = 136/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAYLGFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCDALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|218691361|ref|YP_002399573.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli ED1a]
gi|254813693|sp|B7N0K6|CCA_ECO81 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|218428925|emb|CAR09874.2| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase
and 2'nucleotidase and phosphatase [Escherichia coli
ED1a]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 139/396 (35%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|110643300|ref|YP_671030.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli 536]
gi|123048854|sp|Q0TD50|CCA_ECOL5 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|110344892|gb|ABG71129.1| tRNA nucleotidyltransferase [Escherichia coli 536]
Length = 412
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 138/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPSEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|157155570|ref|YP_001464516.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli E24377A]
gi|191168809|ref|ZP_03030584.1| multifunctional CCA protein [Escherichia coli B7A]
gi|218696761|ref|YP_002404428.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli 55989]
gi|300923716|ref|ZP_07139742.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 182-1]
gi|301325594|ref|ZP_07219060.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 78-1]
gi|307310319|ref|ZP_07589967.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Escherichia coli W]
gi|309793620|ref|ZP_07688046.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 145-7]
gi|331669920|ref|ZP_08370765.1| multifunctional CCA protein [Escherichia coli TA271]
gi|167006455|sp|A7ZRT7|CCA_ECO24 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|254813692|sp|B7LGZ2|CCA_ECO55 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|157077600|gb|ABV17308.1| multifunctional CCA protein [Escherichia coli E24377A]
gi|190901138|gb|EDV60912.1| multifunctional CCA protein [Escherichia coli B7A]
gi|218353493|emb|CAU99605.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase
and 2'nucleotidase and phosphatase [Escherichia coli
55989]
gi|300420030|gb|EFK03341.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 182-1]
gi|300847566|gb|EFK75326.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 78-1]
gi|306909214|gb|EFN39709.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Escherichia coli W]
gi|308122577|gb|EFO59839.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 145-7]
gi|315062364|gb|ADT76691.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Escherichia coli W]
gi|323377048|gb|ADX49316.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Escherichia coli KO11]
gi|323946764|gb|EGB42783.1| poly A polymerase head domain-containing protein [Escherichia coli
H120]
gi|331062833|gb|EGI34747.1| multifunctional CCA protein [Escherichia coli TA271]
Length = 412
Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 72/396 (18%), Positives = 137/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|324005362|gb|EGB74581.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 57-2]
Length = 412
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 72/396 (18%), Positives = 137/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMIHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|315186818|gb|EFU20576.1| poly(A) polymerase [Spirochaeta thermophila DSM 6578]
Length = 364
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 62/271 (22%), Positives = 109/271 (40%), Gaps = 24/271 (8%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ ++ L K + +VGGAVRD L+ +D DI T P R+ R+F R
Sbjct: 38 HALMVIRRLRKAGHTAYVVGGAVRDLLLGKHPKDFDIVTCATPGRIKRLFPYARV----I 93
Query: 74 SISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ + + + + +Y ++TT RS R + D+ RRDFT+NALY D
Sbjct: 94 GRRFRLVHVYVTKDEYVEVTTFRSA-----RADDPNAYGSIEEDAFRRDFTVNALYYDPF 148
Query: 133 GKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ I D+V G +R R + I ED +R+LR ++ A +
Sbjct: 149 SEEILDFVDGFTHVRERRLVPIIPLDRIFEEDPVRMLRAVKYHARMELEMPKELVRKIRD 208
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------- 241
A + + +S+ R+ EI K+L + + +F + V E+
Sbjct: 209 DAWRLEE-VSTSRLTEEIYKILACGEASSVWEALQRFHLFDHLLPHVHEVLGAAGPGIPL 267
Query: 242 --SLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270
++ ++ + E D L+ +
Sbjct: 268 ARWHEEFERLDRLVREGEVDRDVLILPFARL 298
>gi|91212484|ref|YP_542470.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli UTI89]
gi|117625369|ref|YP_855260.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli APEC O1]
gi|218560143|ref|YP_002393056.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli S88]
gi|237706183|ref|ZP_04536664.1| tRNA nucleotidyl transferase [Escherichia sp. 3_2_53FAA]
gi|331659345|ref|ZP_08360287.1| multifunctional CCA protein [Escherichia coli TA206]
gi|122422381|sp|Q1R6S5|CCA_ECOUT RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|166233852|sp|A1AFX8|CCA_ECOK1 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702047|sp|B7MAD3|CCA_ECO45 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|91074058|gb|ABE08939.1| tRNA nucleotidyl transferase [Escherichia coli UTI89]
gi|115514493|gb|ABJ02568.1| tRNA nucleotidyl transferase [Escherichia coli APEC O1]
gi|218366912|emb|CAR04683.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase
and 2'nucleotidase and phosphatase [Escherichia coli
S88]
gi|226899223|gb|EEH85482.1| tRNA nucleotidyl transferase [Escherichia sp. 3_2_53FAA]
gi|294491470|gb|ADE90226.1| multifunctional CCA protein [Escherichia coli IHE3034]
gi|307625329|gb|ADN69633.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli UM146]
gi|315288832|gb|EFU48230.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 110-3]
gi|315297758|gb|EFU57035.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli MS 16-3]
gi|323951410|gb|EGB47285.1| poly A polymerase head domain-containing protein [Escherichia coli
H252]
gi|323957783|gb|EGB53497.1| poly A polymerase head domain-containing protein [Escherichia coli
H263]
gi|331053927|gb|EGI25956.1| multifunctional CCA protein [Escherichia coli TA206]
Length = 412
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 138/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLCFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|325124553|gb|ADY84076.1| poly(A) polymerase I (PAP) [Acinetobacter calcoaceticus PHEA-2]
Length = 465
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/273 (19%), Positives = 112/273 (41%), Gaps = 9/273 (3%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
+ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + + +
Sbjct: 2 IDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGRRCRIIG---RRFE 58
Query: 79 TIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ ++ ++ T R+ G + + D RRDF+IN LY +
Sbjct: 59 LAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTLYYQPRK 118
Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++ D+ ++D++N+T++ +GD R ED +R+LR RF A K + +
Sbjct: 119 SIVLDFCKAIDDVKNKTLRLLGDPAQRFEEDPVRMLRTLRFAAKLNFKIDSDILDIFDAE 178
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ L+ +S R++ E KL + + + G++K++F D+Q + + +
Sbjct: 179 MTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIEFGVWKQLFADIQPNLTPFILRAAKN 238
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
++ + +
Sbjct: 239 TDQRIQVGKTINPAFFYAVLLWQPFLERCEFYL 271
>gi|218701827|ref|YP_002409456.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli IAI39]
gi|226702049|sp|B7NJR9|CCA_ECO7I RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|218371813|emb|CAR19668.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase
and 2'nucleotidase and phosphatase [Escherichia coli
IAI39]
Length = 412
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 138/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQIGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|207108716|ref|ZP_03242878.1| poly(A) polymerase [Helicobacter pylori HPKX_438_CA4C1]
Length = 264
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 2/166 (1%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
+ + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ T I
Sbjct: 94 EELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHFRVLETGI 153
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--ADSLRRDFTINALYADQQG 133
+GTI + + ++ITT R + D RRDF++NA+
Sbjct: 154 KHGTITALKNHQIYEITTFRIEKGHIKHRKPKELVFSAYLTDDLKRRDFSMNAIAYSPTK 213
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
+ID G N + N+ I+ +G A R ED LRILR RF A G
Sbjct: 214 GLIDPFKGQNAIENQIIECVGGARLRFFEDALRILRALRFSATLGF 259
>gi|297808367|ref|XP_002872067.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297317904|gb|EFH48326.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 533
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/291 (18%), Positives = 102/291 (35%), Gaps = 20/291 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L+ L +VGG VRD ++ + +D DI T+ V++ F +
Sbjct: 82 MIAKSTRKVLNGLKSKGHDVYLVGGCVRDLILKRTPKDFDILTSAELREVVQTFPRCEI- 140
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV----------VFTRDWKADSLR 119
+ + ++++ + R + + L+
Sbjct: 141 ---VGRRFPICHVHIGDDLVEVSSFSTSAQNYPRNTRTESKESSGSDGDEDCIRLNNCLQ 197
Query: 120 RDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN L D K V DY+GG+ D+R ++ + A +D RILR R A G
Sbjct: 198 RDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRTVIHAGTSFQQDCARILRAIRIAARLG 257
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-- 236
+ + ++ L RI E+N +L + ++ ++ G+ + +
Sbjct: 258 F-RMSKETAHFIKNLSLLVQRLDKGRILMEMNYMLAYGSAEASLRLLWKFGLLEILLPIQ 316
Query: 237 --DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + + +D LL +IL+ K
Sbjct: 317 AAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRPCHSSLWIAILAFHKAL 367
>gi|159029061|emb|CAO90047.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 409
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 72/419 (17%), Positives = 149/419 (35%), Gaps = 35/419 (8%)
Query: 12 DSDLINILSLLNKGE--DKSCIVGGAVRDSLMNLSVQ--DIDIATTILPDRVMR-IFSKT 66
DS + + +N+ E + + +VGGAVRD+L+N D+D + + I
Sbjct: 8 DSLVKEVF-AINQQELPENAYLVGGAVRDALLNRQKDYIDLDFVVPEKAIEIAQTIAHHY 66
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + +++ + D + D RRDFT+NA
Sbjct: 67 KAGFVVLDAVRQIARVVFPQGTLDFA--------------QQEGESLEIDLKRRDFTVNA 112
Query: 127 LYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
L + Q ++ D +GGL DL ++++ I + + +D LR+LR +R A I+
Sbjct: 113 LAYNLQTQEIFDPLGGLKDLGCQSLRMISREN--LQDDPLRLLRAYRQAAQLDF-EIEPH 169
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L+ +++ER+ SE+N LL + + G+ + +++
Sbjct: 170 TRATIRSLAPLLRRVAAERVQSELNYLLLNSRGNKWLKSAWEDGLLFLWLRRITPAKMER 229
Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ + E+ L + L+ R ++
Sbjct: 230 VMGVEAAAGFLESLSPEKFIFSPSQLQLTKLALLVSDVLAEAEKELIDLKYSRGEIRTVM 289
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ K +++ +++Y + + + AL + + L
Sbjct: 290 TVIKSLPPLKEADNLSLREQYFIYLNTGKVFPVFALFALSMGINQNIVASLLTSYLDPDN 349
Query: 357 HWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
P L GDD++ + P +G +L + I + QE + +K++
Sbjct: 350 IIAHPRPLLRGDDLINHLHLKPSPIIGKLLTEVQIAQIEGKVTVFQEAID-FAKKVLQQ 407
>gi|255540089|ref|XP_002511109.1| poly(A) polymerase, putative [Ricinus communis]
gi|223550224|gb|EEF51711.1| poly(A) polymerase, putative [Ricinus communis]
Length = 524
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 63/378 (16%), Positives = 122/378 (32%), Gaps = 35/378 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
S IL+ L + + +VGG VRD ++ +D DI T+ V R FS+
Sbjct: 81 MIASPTRKILNGLKQRGYEVYLVGGCVRDLILKRIPKDFDIITSAELREVARAFSRCEI- 139
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---------KADSLRR 120
+ + ++++ + G + +R
Sbjct: 140 ---VGRRFPICHVYVGDTVVEVSSFSTTGQKFGGDWNYDTQSPIDCDEKDYMRWRNCSQR 196
Query: 121 DFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTIN L D K+ DY+GGL D+R ++ + A + ED RILR R A G
Sbjct: 197 DFTINGLMFDPYEKIVYDYIGGLEDIRKAKVRTVTPASNSFQEDCARILRAVRIAARLGF 256
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL--- 236
+ + L R+ E+N +L + ++ ++ G+ + +
Sbjct: 257 -RFSRETAHFLKHFAHSILRLDKGRLLMEMNYMLAYGSSEASLRLLWKFGLLEILLPIQA 315
Query: 237 -DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF---------- 285
+ + +D LL IL+ K
Sbjct: 316 AYFVHCGFKRRDKRSNMLLSLLSNMDKLLAPDRPCHSCLWIGILAFHKALSEQPRDPLVV 375
Query: 286 ------SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
++ +S E+ K + D+++ + + ++
Sbjct: 376 AAFCLAVHNGGDMSEAVNIAKRIDKPHDMSFHELCKPGDMDTDQLVDEVMDLAQSIKRVL 435
Query: 340 LTHQDTCFILQVLSDIIH 357
D ++ Q +++
Sbjct: 436 SMMTDEHYVSQAMAEYPQ 453
>gi|228920347|ref|ZP_04083693.1| CCA-adding enzyme [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|228839269|gb|EEM84564.1| CCA-adding enzyme [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
Length = 346
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 67/344 (19%), Positives = 143/344 (41%), Gaps = 11/344 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RNVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++GK++D G ++ R I +G+A R ED LR++R RF + G +++
Sbjct: 66 IAMTEEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLEMKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETHGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + + F + ++ S+ KFS + + +K
Sbjct: 183 LKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLAIRTRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + + + + ++ +T
Sbjct: 243 DWDTV----LLYKTGIHIAEMAERVYEAM-IESYDPTSVERVQSMFHALPIQERQEMNVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G+D++ + PG V +L ++ + + +E + L+
Sbjct: 298 GNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 341
>gi|213586557|ref|ZP_03368383.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E98-0664]
Length = 129
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ ++ + ++ T R G + ++ + L RD
Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHNE--GSESDRTTSQRGQNGMLLRD 120
>gi|289450662|ref|YP_003474410.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289185209|gb|ADC91634.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 503
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 68/425 (16%), Positives = 129/425 (30%), Gaps = 52/425 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ + + ++ VGG VRD L+ L +D D+ L + ++ ++
Sbjct: 59 VQRLAEAVRAAGGRAWAVGGCVRDKLLGLKPKDYDVEVHGLGEAELQAVLAKLGRIDTVG 118
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS----LRRDFTINALYAD 130
++G + D+ R + + + + RRDFT NA+ D
Sbjct: 119 KAFGIYTL--SGTNIDVALPREERLVGAGHRDFAVAVKPELGCRLAAARRDFTFNAIMED 176
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
I G D R R ED LR+ R +F A + + +D LV
Sbjct: 177 PLTGEIFDPYGGRDDLARGRLHF-VEAGRFGEDPLRVFRAAQFAARFDCRA--TDELVDI 233
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-------- 242
+ + + L++ P N + + F +V +
Sbjct: 234 CRKMSLVTLPRERVAAELHKALVQGGKPGNFFTFLAAVEQLRPWFGEVAAVKSMRQLVAV 293
Query: 243 ------------------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284
L L + E F + L + I+ +K +L+ +
Sbjct: 294 LDRGARFREESSVQYGFMLAVLGSELGEEGNFGLAAAAKLLERLGIAKNIQKYVLTQLTE 353
Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY----LYGDKVMIAKLKIFLALHYNNL 340
F + + + +PE + I + A+ + L
Sbjct: 354 FYHLKNVFDKNDANLAAFLRSTAADLPEQPDEGWGLTTYCPKLAEINRCWFKAAVPRDLL 413
Query: 341 THQDTCFILQVLSDIIHWKK-------------PLFPLTGDDVVKYGIPPGKKVGNILVH 387
T +L S+ + + P+ G D+V G+ PG + G L
Sbjct: 414 LLAKTLDLLTNRSEARRQQAVWWASYTIFETLQKIPPIQGRDLVAEGLEPGPRFGCWLER 473
Query: 388 CKQEW 392
+
Sbjct: 474 AENLR 478
>gi|300854314|ref|YP_003779298.1| bifunctional tRNA-nucleotidyltransferase [Clostridium ljungdahlii
DSM 13528]
gi|300434429|gb|ADK14196.1| bifunctional tRNA-nucleotidyltransferase [Clostridium ljungdahlii
DSM 13528]
Length = 388
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 77/402 (19%), Positives = 145/402 (36%), Gaps = 29/402 (7%)
Query: 14 DLINILSLL-NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+IN++ + K+ IVGGAVRD+ + V+DIDI P+ ++ K
Sbjct: 13 QIINLIKAICKSNGIKAYIVGGAVRDAFLGNKVKDIDICIDKNPNFIIGKL--NGIKCFQ 70
Query: 73 TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+ T ++ + D+ R + ++ + D RRDFT NAL D
Sbjct: 71 YYDKFQTASLLFQNEVNIDLIRCRKEYYARDGELPIIDPSNIYNDLRRRDFTANALAYDI 130
Query: 132 QGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ID GGL D++N++++ I +R ED RI R ++ YG D D ++
Sbjct: 131 VTGSLIDIYGGLEDIKNKSLQKIHLNSYR--EDPTRIFRAVKYAVRYGFDLKDKDEIINC 188
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ I + + + E N + M + + EI + +
Sbjct: 189 VNEGVFNLISNDRIVKEIYHLCEEKMWIKNIL--MCGNLKIFNVNREKLEIGNENYNNTD 246
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + L + S+L K S+ + +
Sbjct: 247 KRILRLFYA----LEDKKCAHILGENSVLDSKLKVSIKNFTENYQKIASLILNAMDNYEL 302
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
+I K YG ++ + ++ + + + L G +
Sbjct: 303 YKILKGINDYGLILL----------------KWNDKLKYKIYNYVHNMYHYKSSLNGKFI 346
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
GI GK +G +L + + +NS + ++ L L ++I
Sbjct: 347 SSIGIQNGKAIGEVLNYMTKIELNSMIKYGKKYLVKNLGEII 388
>gi|229172273|ref|ZP_04299837.1| CCA-adding enzyme [Bacillus cereus MM3]
gi|228611261|gb|EEK68519.1| CCA-adding enzyme [Bacillus cereus MM3]
Length = 346
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 67/345 (19%), Positives = 144/345 (41%), Gaps = 11/345 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RHVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++GK++D G ++ R I +G+A R ED LR++R RF + G +++
Sbjct: 66 IAMTEEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLEMKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLQELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ ++ F + ++ S+ KFS + + +K
Sbjct: 183 LKAMQYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRTRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + H + + + + +T
Sbjct: 243 DWDTV----LLYKTGLHIAEMAERVYEAM-IESYDHTSVKRVQTLFEALPIKSRQEMNVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G+D++ + PG V ++ ++ + + +E + L++
Sbjct: 298 GNDLLSWANKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 342
>gi|78211736|ref|YP_380515.1| polyA polymerase [Synechococcus sp. CC9605]
gi|78196195|gb|ABB33960.1| possible polyA polymerase [Synechococcus sp. CC9605]
Length = 403
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 70/399 (17%), Positives = 139/399 (34%), Gaps = 44/399 (11%)
Query: 18 ILSLLNKGEDK-----SCIVGGAVRDSLMNLS-------VQDIDIATTILPDRVMRIF-- 63
+L L + +VGG VRD L++ V D+D ++
Sbjct: 10 VLEALQRAGQSRDVRCLALVGGVVRDQLLHQRCGRSWSGVPDLDWVVEGDAAALVAELVV 69
Query: 64 --SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
R + ++GT+ D+ T R + +V +AD RRD
Sbjct: 70 QVGSERISGVQEHGAFGTVAFQLDGIPLDLATARQEHYPAPAENPIVRAGTLEADLARRD 129
Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+ D G++ID G DL + I+F+ + +D R++R R+ A G +
Sbjct: 130 FTINAMALDLVAGELIDLHHGQEDLASGQIRFLHA--GSVQDDPTRVIRAARYAARLGFE 187
Query: 181 -------NIDSDGLVASIKAKKGLKILSS-----ERIWSEINKLLEAKNPLNAIVHMYNG 228
I S +G L++ R+ E+ +LLE + A+ +
Sbjct: 188 LAKESREQIRSTMQQWPWAWGQGDAALTAPPALASRLRMELERLLEREPWPQALDLLEQW 247
Query: 229 GIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ +Q + ++ A ++ + +LL D ++ +
Sbjct: 248 QALPLLDAQLQR-DPGRTQRLHWARRLGLPLMPALLAGAA-----DPVALAERLQIPGKQ 301
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
++ + + + + + ++ ++ + LA+
Sbjct: 302 QQWLKQCGALCDWLMDNPPV-LQASPSIWSTALEQKGWQPEAVALAVTLR------PKQW 354
Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
+L W++ P T +++ G PG +G L
Sbjct: 355 RPLLRWWGRWRRIQAPQTARNLIAAGWQPGPAIGEELRR 393
>gi|51244425|ref|YP_064309.1| polyA polymerase [Desulfotalea psychrophila LSv54]
gi|50875462|emb|CAG35302.1| probable polyA polymerase [Desulfotalea psychrophila LSv54]
Length = 497
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 12/222 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D D + +L L +VGG VRD + + +D DI+T P ++ ++F +
Sbjct: 69 MLDPDALFVLEKLRNAGFSGYLVGGGVRDLYLGKTPKDFDISTNARPGQLRKLFKNSN-- 126
Query: 70 VIPTSISYGTIKIIC-RKKYFDITTLRSDLITD-----GRYAKVVFTRDWKADSLRRDFT 123
+ +++ K +++TLRS D A D+ RRD T
Sbjct: 127 --TIGRRFRLVQVFFKGGKTIEVSTLRSLSEHDLDGPEAILAPNNTFGTLDEDAQRRDLT 184
Query: 124 INALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
IN+L+ + + +IDYVGG+ DL ++ +GD RI D +RI+R R + I
Sbjct: 185 INSLFYEIETHSIIDYVGGVEDLEKGIVRIVGDPKKRITRDPVRIMRAIRHCSRNDF-TI 243
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224
+ A + L + R+ E K L
Sbjct: 244 EEKSWEAICDQHQQLALCPPSRLRDEFLKDLYNCKIAPWFEL 285
>gi|82778389|ref|YP_404738.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Shigella
dysenteriae Sd197]
gi|309785360|ref|ZP_07679991.1| poly A polymerase head domain protein [Shigella dysenteriae 1617]
gi|123561586|sp|Q32BQ8|CCA_SHIDS RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|81242537|gb|ABB63247.1| tRNA nucleotidyl transferase [Shigella dysenteriae Sd197]
gi|308926480|gb|EFP71956.1| poly A polymerase head domain protein [Shigella dysenteriae 1617]
Length = 412
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 72/396 (18%), Positives = 136/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYHQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLVFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|85057887|ref|YP_456803.1| poly(A) polymerase [Aster yellows witches'-broom phytoplasma AYWB]
gi|84789992|gb|ABC65724.1| poly(A) polymerase [Aster yellows witches'-broom phytoplasma AYWB]
Length = 407
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 95/404 (23%), Positives = 164/404 (40%), Gaps = 22/404 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYKVI 71
I+++L ++ IVGG VRD L+ ++ +DIDI T P ++ + K
Sbjct: 8 KTAQKIITILKTNGFEAFIVGGTVRDYLLKINANEDIDITTNAAPKQIKLLL--CPKKTT 65
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG-RYA-KVVFTRDWKADSLRRDFTINALYA 129
I+YG++KI K F+ITT R + R+ ++ FT++ D LRRDFTINAL
Sbjct: 66 QIQINYGSLKITFEKYLFEITTYRKEGTYKDYRHPSEIFFTKNIHQDLLRRDFTINALLM 125
Query: 130 DQQGKVIDY---VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
D+ GK+ D+ G DL+ I+ I D R ED LRILR F F + I+ +
Sbjct: 126 DETGKIFDFTPEKKGKTDLKKGLIRTIKDPFIRFQEDPLRILRAFYFQSKL-CFCIEKNT 184
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A I+ L +SS+RI+ + K++ KN M +FL S+ L
Sbjct: 185 KKAIIQKNHLLAKISSQRIYEHLEKIITHKNWHQTFKTMIETKT--HLFLPQIYKSILCL 242
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ E + + L R I + + + F+ ++ Y N
Sbjct: 243 GYLNETQLKYIQTHHKLKRRIFWSMSLLLNNQILASFPFTKQKKKIYQ---------NIA 293
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+LS+ + + + + L + + + + + +
Sbjct: 294 SLSLYLWENITFNLFKHGLKNCLLANQINYLLQKEPYEVAKMQYIYQHLPIKTITELNFS 353
Query: 367 GDDVVKY--GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+V+K P G + + + +N +E L + +
Sbjct: 354 WKEVLKQLPQKPKGTWIKHTQKELITKVLNREIPNIKERLINFV 397
>gi|331654655|ref|ZP_08355655.1| multifunctional CCA protein [Escherichia coli M718]
gi|331048037|gb|EGI20114.1| multifunctional CCA protein [Escherichia coli M718]
Length = 412
Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats.
Identities = 72/396 (18%), Positives = 136/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYHQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFEATDYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|288817886|ref|YP_003432233.1| poly A polymerase [Hydrogenobacter thermophilus TK-6]
gi|288787285|dbj|BAI69032.1| poly A polymerase [Hydrogenobacter thermophilus TK-6]
gi|308751485|gb|ADO44968.1| Polynucleotide adenylyltransferase region [Hydrogenobacter
thermophilus TK-6]
Length = 820
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 80/404 (19%), Positives = 139/404 (34%), Gaps = 37/404 (9%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
I + K+ +VGG VRD L+ V D+D +V + ++
Sbjct: 440 REIGIIAEGLGFKAYLVGGVVRDILLGKEVWDVDFVVEGDAIKVAELLAQKHKVEFHPFP 499
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK- 134
+GT + + ++ T R + +V + D LRRDFTINA+ +
Sbjct: 500 EFGTAHVKVKGLKLELATTRRETYPHPGAYPLVEYASLREDLLRRDFTINAMAVSVNSQD 559
Query: 135 ---VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+IDY GGL DL++R I+ + +ED +RILR RF G K S +
Sbjct: 560 FGTLIDYFGGLRDLKDRLIRVLHP--LSFVEDPVRILRALRFAGRLGFKLSKSTERLLRS 617
Query: 192 KAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGG--------IFKEIFLDVQEIS 242
G + RI +E+ L + L + I L+ + +
Sbjct: 618 AVSLGAISSAPKGRIMNEVRLALREERFLEILELYRKYQILAEIFKGITWSPKLEKKLLR 677
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-C 301
L + + E E + +VL+ ++ ++ + S P +R
Sbjct: 678 LRDIITWHKIEFPKEVMDYGWVYLLVLLEEMKEEEGMAFLRDISAPSWVRETYKIMKRGS 737
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+K+L + YL L L L + L+ L +
Sbjct: 738 KSTEKSLLEAKRNSEVYLSLKN---KPLYFLLMLMTKENLKEKVKLYLEKLR-FVKVNVE 793
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
F G+ G+++G + ++ E L
Sbjct: 794 KF---------RGL-SGRELGEAIEK-------EKMKIMDEALE 820
>gi|22327016|ref|NP_197758.2| polynucleotide adenylyltransferase family protein [Arabidopsis
thaliana]
gi|332005816|gb|AED93199.1| Polynucleotide adenylyltransferase family protein [Arabidopsis
thaliana]
Length = 527
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 66/347 (19%), Positives = 116/347 (33%), Gaps = 21/347 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L+ L +VGG VRD ++ + +D DI T+ V+R F +
Sbjct: 78 MIAKSTRKVLNGLKSKGHDVYLVGGCVRDLILKRTPKDFDILTSAELREVVRTFPRCEI- 136
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV----------VFTRDWKADSLR 119
+ + ++++ + R + + L+
Sbjct: 137 ---VGRRFPICHVHIGDDLIEVSSFSTSAQNSSRNTRTECKESSGSDGDEDCIRLNNCLQ 193
Query: 120 RDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN L D K V DY+GG+ D+R ++ + A +D RILR R A G
Sbjct: 194 RDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRTVIHAGTSFHQDCARILRAIRIAARLG 253
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-- 236
+ + ++ L RI E+N +L + ++ ++ GI + +
Sbjct: 254 F-RMSKETAHFIKNLSLLVQRLDKGRILMEMNYMLAYGSAEASLRLLWKFGILEILLPIQ 312
Query: 237 --DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF-SLPREIRY 293
+ + + +D LL +IL+ K PR
Sbjct: 313 AAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRPCHSSLWIAILAFHKALADKPRSPIV 372
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ L EI K DK ++ L + L
Sbjct: 373 VAAFSLAVHNCGDILEAVEITKKITRPHDKSFFELVEPEENLDFQTL 419
>gi|228957911|ref|ZP_04119651.1| CCA-adding enzyme [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|229109091|ref|ZP_04238691.1| CCA-adding enzyme [Bacillus cereus Rock1-15]
gi|229126949|ref|ZP_04255960.1| CCA-adding enzyme [Bacillus cereus BDRD-Cer4]
gi|229144234|ref|ZP_04272648.1| CCA-adding enzyme [Bacillus cereus BDRD-ST24]
gi|229149833|ref|ZP_04278061.1| CCA-adding enzyme [Bacillus cereus m1550]
gi|228633514|gb|EEK90115.1| CCA-adding enzyme [Bacillus cereus m1550]
gi|228639242|gb|EEK95658.1| CCA-adding enzyme [Bacillus cereus BDRD-ST24]
gi|228656549|gb|EEL12376.1| CCA-adding enzyme [Bacillus cereus BDRD-Cer4]
gi|228674369|gb|EEL29613.1| CCA-adding enzyme [Bacillus cereus Rock1-15]
gi|228801827|gb|EEM48704.1| CCA-adding enzyme [Bacillus thuringiensis serovar pakistani str.
T13001]
Length = 346
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 67/344 (19%), Positives = 142/344 (41%), Gaps = 11/344 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RNVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++GK++D G ++ R I +G+A R ED LR++R RF + G +++
Sbjct: 66 IAMTEEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLEMKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + + F + ++ S+ KFS + + +K
Sbjct: 183 LKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRTRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + + + ++ +T
Sbjct: 243 DWDTV----LLYKTGIHIAEMAERVYEAM-IERYDPTSVERVQSMFHALPIQERQEMNVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G+D++ + PG V +L ++ + + +E + L+
Sbjct: 298 GNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 341
>gi|229029317|ref|ZP_04185405.1| CCA-adding enzyme [Bacillus cereus AH1271]
gi|228731976|gb|EEL82870.1| CCA-adding enzyme [Bacillus cereus AH1271]
Length = 346
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 66/345 (19%), Positives = 143/345 (41%), Gaps = 11/345 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RHVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++G+++D G ++ R I +G+A R ED LR++R RF + G +++
Sbjct: 66 IAMTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLEMKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLQELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + F + ++ S+ KFS + + +K
Sbjct: 183 LKATQYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRTRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + H + + + + +T
Sbjct: 243 DWDTV----LLYKTGLHIAEMAERVYEAM-IESYDHTSVKRVQTLFEILPIKSRQEMNVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G+D++ + PG V ++ ++ + + +E + L++
Sbjct: 298 GNDLLNWANKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 342
>gi|260857186|ref|YP_003231077.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Escherichia coli O26:H11 str. 11368]
gi|260869808|ref|YP_003236210.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Escherichia coli O111:H- str. 11128]
gi|257755835|dbj|BAI27337.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Escherichia coli O26:H11 str. 11368]
gi|257766164|dbj|BAI37659.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Escherichia coli O111:H- str. 11128]
gi|323154511|gb|EFZ40711.1| poly A polymerase head domain protein [Escherichia coli EPECa14]
gi|323178761|gb|EFZ64337.1| poly A polymerase head domain protein [Escherichia coli 1180]
Length = 412
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 72/396 (18%), Positives = 136/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPL 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|170766145|ref|ZP_02900956.1| multifunctional CCA protein [Escherichia albertii TW07627]
gi|170125291|gb|EDS94222.1| multifunctional CCA protein [Escherichia albertii TW07627]
Length = 412
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 73/396 (18%), Positives = 138/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGGTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL + G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQNDDGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLVLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPHVFFQVLRDCGALRVLFPEIDVLFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +AKL + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLAKLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|283787184|ref|YP_003367049.1| multifunctional Cca protein [includes: tRNA nucleotidyltransferase;
2'-nucleotidase; 2',3'-cyclic phosphodiesterase;
phosphatase] [Citrobacter rodentium ICC168]
gi|282950638|emb|CBG90310.1| multifunctional Cca protein [includes: tRNA nucleotidyltransferase;
2'-nucleotidase; 2',3'-cyclic phosphodiesterase;
phosphatase] [Citrobacter rodentium ICC168]
Length = 410
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 79/416 (18%), Positives = 146/416 (35%), Gaps = 42/416 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDTLLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G +ID G
Sbjct: 54 THEEYALARTERKSGPGYTGFTCYAAPDVTLEEDLQRRDLTINALAQDDDGNIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y + ++ +
Sbjct: 114 ADLKNRLLRHV---SPAFSEDPLRVLRVARFAARYAHLSFRIADETMALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F +V + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEVDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S + ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPEVDIRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ D +AK + I+++ I W+KP + G
Sbjct: 289 RVPNDIRDLAKRVAEFHDLIHTFPVLQPKTIVKLFDSIDAWRKPQRVEQIALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ-LS-QEDLHHLLRKLIASSQ 416
P G+ + + +E + S FQ + +E+L R++ A ++
Sbjct: 349 RTGFEAADYPQGRLLREAWQVAQSVPTKEVVESGFQGMEIREELTR--RRIAAVAK 402
>gi|228964610|ref|ZP_04125718.1| CCA-adding enzyme [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228795041|gb|EEM42539.1| CCA-adding enzyme [Bacillus thuringiensis serovar sotto str.
T04001]
Length = 346
Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 142/344 (41%), Gaps = 11/344 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RNVPVGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++G+++D G ++ R I +G+A R ED LR++R RF + G +I++
Sbjct: 66 IAMTEEGEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMIRGIRFVSTLGF-SIETKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E K+L + + + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKMLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ F + ++ S+ KFS + + ++
Sbjct: 183 LTATRYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLAIRTRKER 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + + + + ++ +T
Sbjct: 243 GWDTV----LLYKTGIHIAEMAERVYEAM-IESYDPTSVKRVQSMFHVLPIQERQEMNVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G+D++ + PG V +L ++ + + +E + L+
Sbjct: 298 GNDLLNWANKKPGPWVAEMLQKIEEAIVQGNIVNEKERIREWLQ 341
>gi|18377862|gb|AAL67117.1| AT5g23690/MQM1_4 [Arabidopsis thaliana]
gi|22137254|gb|AAM91472.1| AT5g23690/MQM1_4 [Arabidopsis thaliana]
Length = 527
Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats.
Identities = 66/347 (19%), Positives = 115/347 (33%), Gaps = 21/347 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L+ L +VGG VRD ++ + +D DI T+ V+R F +
Sbjct: 78 MIAKSTRKVLNGLKSKGHDVYLVGGCVRDLILKRTPKDFDILTSAELREVVRTFPRCEI- 136
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV----------VFTRDWKADSLR 119
+ + ++++ + R + + L+
Sbjct: 137 ---VGRRFPICHVHIGDDLIEVSSFSTSAQNSSRNTRTECKESSGSDGDEDCIRLNNCLQ 193
Query: 120 RDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN L D K V DY+GG+ D+R ++ A +D RILR R A G
Sbjct: 194 RDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRTEIHAGTSFHQDCARILRAIRIAARLG 253
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-- 236
+ + ++ L RI E+N +L + ++ ++ GI + +
Sbjct: 254 F-RMSKETAHFIKNLSLLVQRLDKGRILMEMNYMLAYGSAEASLRLLWKFGILEILLPIQ 312
Query: 237 --DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF-SLPREIRY 293
+ + + +D LL +IL+ K PR
Sbjct: 313 AAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRPCHSSLWIAILAFHKALADKPRSPIV 372
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ L EI K DK ++ L + L
Sbjct: 373 VAAFSLAVHNCGDILEAVEITKKITRPHDKSFFELVEPEENLDFQTL 419
>gi|229043381|ref|ZP_04191098.1| CCA-adding enzyme [Bacillus cereus AH676]
gi|228725962|gb|EEL77202.1| CCA-adding enzyme [Bacillus cereus AH676]
Length = 346
Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats.
Identities = 67/344 (19%), Positives = 143/344 (41%), Gaps = 11/344 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RNVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++GK++D G ++ R I +G+A R ED LR++R RF + G +++
Sbjct: 66 IAMTEEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLEMKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + + F + ++ S+ KFS + + +K
Sbjct: 183 LKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRTRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + + ++ ++ +T
Sbjct: 243 DWDTV----LLYKTGIHIAEMAERVYEAM-IERYDPTSVERVQSMFHALLIQERQEMNVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G+D++ + PG V +L ++ + + +E + L+
Sbjct: 298 GNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 341
>gi|254424203|ref|ZP_05037921.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Synechococcus sp. PCC 7335]
gi|196191692|gb|EDX86656.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Synechococcus sp. PCC 7335]
Length = 482
Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats.
Identities = 79/448 (17%), Positives = 143/448 (31%), Gaps = 58/448 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNL--------------SVQDIDIATTI---L 55
L+ I + IVGGAVRD L+N + DID+
Sbjct: 42 PVLMMIAEASARRGWSLYIVGGAVRDLLLNRVGNDRAGSKVENSLPLTDIDLVVENQVNT 101
Query: 56 PDRVMR----IFSKTRYKVIP-----TSISYGTIKIICRKKYFDITTLRSDLITDGRYAK 106
D I ++ P + T + + DI T R++
Sbjct: 102 ADETAVGAGVILAEAIQAEYPEIEAQVHGQFQTATLTWQSWQIDIATARTEFYAYPAANP 161
Query: 107 VVFTRDWKADSLRRDFTINALYAD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILE 162
V D D RRDFTINA+ Q G+++D G DL+ R ++ + +E
Sbjct: 162 AVEPSDIYRDLYRRDFTINAIALKLTGSQPGQLLDIFNGQADLQQRLVRVLHT--DSFIE 219
Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222
D RI R RF G +A K G+ S + + L +
Sbjct: 220 DPTRIFRAVRFAVRLGFDLEAQTQQLARSAVKSGIYEKSRSKYKKVPALQSRLQAELKYL 279
Query: 223 VHMYNGGIFKEIFLDVQEIS------------LDQLSQVIEAEQVFEWK-IDSLLRFIVL 269
+ ++ ++ L QL ++ FE +L ++
Sbjct: 280 LEESGWEQSLVWLDELGALACLDENLALSPGLLQQLRRMDRWVHKFEVSQPRWILLLELM 339
Query: 270 ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK------KLFYLYGDK 323
++ + +A +L + +Y L + C K+ ++ Y
Sbjct: 340 LAQLGPERCNRVANSLNLSAQSQYRLRNIHACETQLKSQLKAQVHGSALSRSKVYKIFQS 399
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383
A+L + H L ++ + + G + + G PG +
Sbjct: 400 HSHAELLLMADRHPRILGASIWLYLTDL-------ALISPLINGGTLKRLGYSPGPQFKK 452
Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLRKL 411
IL Q+ ++ + + ++L +
Sbjct: 453 ILADVHQQQLDGTLTTEESAEQYVLSQY 480
>gi|320201966|gb|EFW76541.1| tRNA nucleotidyltransferase [Escherichia coli EC4100B]
Length = 412
Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats.
Identities = 72/396 (18%), Positives = 138/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFLVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|149376043|ref|ZP_01893809.1| metal dependent phosphohydrolase [Marinobacter algicola DG893]
gi|149359680|gb|EDM48138.1| metal dependent phosphohydrolase [Marinobacter algicola DG893]
Length = 369
Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats.
Identities = 70/375 (18%), Positives = 132/375 (35%), Gaps = 23/375 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L+ L V+D D T P+ ++R K P +
Sbjct: 2 KTYLVGGAVRDELLGLPVKDRDWVVTGATPEDMLRKGFKQVGADFPVF--------LHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y + D RRD TINA+ G+++D G
Sbjct: 54 TREEYALARTERKQGRGYHGFTVYSAPDVPLEDDLKRRDLTINAMAKSTAGEIVDPFHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL++ ++ + ED LRILR RF A + ++ + +
Sbjct: 114 QDLQDHKLRHV---SEAFAEDPLRILRTARFAARLQPQGFTIAEPTMALMRQMVDQGEVG 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER+W EI + L + P + G + +++ + + + E
Sbjct: 171 DLVPERVWQEIQRALHEQEPGTFFEVLRECGALAVLIPELEPLEAFS-GAIGALRRAHES 229
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
D+ +RF L+S + A+ P + + + T++ + L
Sbjct: 230 SDDTSVRFAALLSPLAPAEARNRARALKAPNDCQDLTRLITDVIPKIHTITSHDADLLLD 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG 378
+ + + F L +V + + + +++ G G
Sbjct: 290 MLDGADVWRRADRFSGLLVALKCALPEPERHRV-DLLKSAQHAATGVQAKTLMEQGFR-G 347
Query: 379 KKVGNILVHCKQEWI 393
K++G + + I
Sbjct: 348 KELGEAIRKERLRRI 362
>gi|204928349|ref|ZP_03219549.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|204322671|gb|EDZ07868.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 413
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 78/412 (18%), Positives = 143/412 (34%), Gaps = 40/412 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y +AD RRD TINAL D G++ID G
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL R ++ + ED LR+LR RF A Y + S+
Sbjct: 114 RDLEARLLRHV---SPAFGEDPLRVLRVARFTARYAHLSFRIADETLSLMRDMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S Q ++ + + + + ++ +
Sbjct: 231 HTLMTLSMAAMLSPQLDVRFATLCHDLGKGLTPKNLW-PRHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGD 368
+ D +AKL + I+++ I W+KP + G
Sbjct: 290 VPNDLRDLAKLVAEYHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRGR 349
Query: 369 D-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ-LS-QEDLHHLLRKLIA 413
P G+ + + +E + + F+ + +E+L R++ A
Sbjct: 350 TGFEASDYPQGRWLREAWQVAQAVPTKEVVEAGFKGIEIREELTK--RRIAA 399
>gi|320354859|ref|YP_004196198.1| poly(A) polymerase [Desulfobulbus propionicus DSM 2032]
gi|320123361|gb|ADW18907.1| poly(A) polymerase [Desulfobulbus propionicus DSM 2032]
Length = 464
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 70/366 (19%), Positives = 126/366 (34%), Gaps = 19/366 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D + + +L L K +VGG VRD + + +D DI+T P ++ ++F +R
Sbjct: 34 LLDREALKVLYRLRDAGFKGYLVGGGVRDLYLGRTPKDFDISTDARPGQLRQLFRNSR-- 91
Query: 70 VIPTSISYGTIKIICRKKY-FDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFT 123
+ +++ R +++TLRS D + D+ RRD T
Sbjct: 92 --TIGRRFRLVQVFFRGNKIIEVSTLRSSSEFDIDGDDAVLPSNNTFGTLEEDAFRRDLT 149
Query: 124 INALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
INAL+ + + +IDY GG+ DL + I+ +GD R D +R++R R A G
Sbjct: 150 INALFYEIENHTIIDYTGGVRDLDDGIIRVVGDPDRRFTRDPVRMMRVVRHAARTGFSIE 209
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D +K L S + L + A + M + L +
Sbjct: 210 DDTFAALRRHREKLLLCPPSRIRDEVLKDLQSGASRPWAELCMTSSLWAALFPLYADALQ 269
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRF--------IVLISWQDKKSILSMAKKFSLPREIRYF 294
++ + +D L I + ++F+LP
Sbjct: 270 GGDGERIRQELLNIFTVLDRLHARGGEDEPVKIPESLLLATLLLPWACQRFNLPETNVRG 329
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
++ + + K I L I L+ ++ L+ S
Sbjct: 330 QAFHRLSRMIKEDVDRYFGEPFNVQRMAKEAITTLLINLSTFHHARVQGGDPKWLKRKSY 389
Query: 355 IIHWKK 360
+
Sbjct: 390 YRDCSR 395
>gi|220905715|ref|YP_002481026.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7425]
gi|219862326|gb|ACL42665.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7425]
Length = 424
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 67/408 (16%), Positives = 124/408 (30%), Gaps = 49/408 (12%)
Query: 29 SCIVGGAVRDSLMNLSVQ--DIDIATTILPDRVM-RIFSKTRYKVIPTSISYGTIKIICR 85
+ +VGG VRD+L D+D P V +I + + +I+
Sbjct: 21 AYLVGGGVRDALRKRPSSYLDLDFVLPAHPVEVASKIARHYKAGFVLLDAERQIARIVFE 80
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLND 144
+ D + D RRDFT+NA+ + I D + G D
Sbjct: 81 QATADFAL--------------QVGDSLEEDLHRRDFTVNAIAYNPHTGAILDPLQGCMD 126
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
L ++ I + + D LR+LR +R A + + + ++ +
Sbjct: 127 LHQGILRMIAPEN--LAADPLRLLRAYRQAAQLDFELDPDTQVEIRRLSPHLKEVAAERV 184
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL- 263
++ LL + + G+F++ L L+++ EA +L
Sbjct: 185 RGE-LSYLLSTPRGTPFLKAAWMDGLFQDWLPATTATDLAYLARMDEAVSGLTKTWPALA 243
Query: 264 -----------------------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
++ + S L ++ R + +
Sbjct: 244 VQLHRPLSDRCRGNEALRRTLLATAKLIWLVGTSTPSPLPDLQRLKYSRSEIQLVTTLRK 303
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMI---AKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
+ + E LY I I L+L H I L
Sbjct: 304 TLPQVSSTAKVEQLSRRDLYFLFQTIGSAFPALIGLSLSVGTAEHALAPLITAWLDPNDP 363
Query: 358 WKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
P ++G D+V + PG ++G +L + + E L
Sbjct: 364 IAHPPVLISGKDLVAHLHLSPGPQLGQLLQALEMAQAEGKITTTSEAL 411
>gi|228945235|ref|ZP_04107591.1| CCA-adding enzyme [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228814470|gb|EEM60735.1| CCA-adding enzyme [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
Length = 346
Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats.
Identities = 67/345 (19%), Positives = 144/345 (41%), Gaps = 11/345 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
K +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 KHVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++G+++D G ++ R I +G+A R ED LR++R RF + G ++++
Sbjct: 66 IAMTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSSLGF-SLETKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + F + ++ S+ KFS + + +K
Sbjct: 183 LKATQYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRKRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + H + + + + +T
Sbjct: 243 DWDTV----LLYKTGIHIAEMAERVYEAM-IESYDHTSVERVQTLFQALPIKSRQEMDVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G+D++ + PG V ++ ++ + + +E + L++
Sbjct: 298 GNDLLNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 342
>gi|16330751|ref|NP_441479.1| polyA polymerase [Synechocystis sp. PCC 6803]
gi|1653244|dbj|BAA18159.1| polyA polymerase [Synechocystis sp. PCC 6803]
Length = 942
Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats.
Identities = 74/462 (16%), Positives = 124/462 (26%), Gaps = 70/462 (15%)
Query: 2 VSIVQHKW-FHDSDLINILSLLNKGEDKSCIVGGAVRDSLM----------NLSVQDIDI 50
+ W + +VGGAVRD + N++ QDID+
Sbjct: 488 THLPPATWQLLTTAAQQ----AQTRGWHLYLVGGAVRDLWLRHSQGAEKHQNITFQDIDL 543
Query: 51 ATTIL--------PDRVMRIFS-KTRYKVIPTSISYGTIKIICRKK------YFDITTLR 95
+ + + + T ++ K + DI T R
Sbjct: 544 VVDGFHATADVGAGVELAQALQGDYPGARLSVHGEFQTAALLWHKDPQLDTLWVDIATAR 603
Query: 96 SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGD 155
++ V + D RRDFTINAL + N
Sbjct: 604 TEFYPYPAANPEVEASSIRQDLYRRDFTINALSIRLTNPNPGKLLDFFGGMNDLQSQQVR 663
Query: 156 --AHHRILEDYLRILRFFRFFAHYG-------------------EKNIDSDGLVASIKAK 194
+ +ED RI R RF G +
Sbjct: 664 VLHANSFIEDPTRIYRAVRFVVRLGFELEPQTETYIRYAIASGVYERWRLTEHPTPALTT 723
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ LS L L+A+ ++ E L Q L + + + E+
Sbjct: 724 RLKAELSIILKAPYWKGALTLLADLDALKCLHAELKLTE-QLWWQVRYLSRWLRWFDPER 782
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-------FNCNFNQKT 307
E LLR +L+ + +A LP+ L + + +
Sbjct: 783 NLEH---WLLRLGILLGALPPQEREKIAAGLQLPKATIDGLTNLETIETAIAKGLNSPAS 839
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
+ Y + +FL N + + + LTG
Sbjct: 840 PKSSPKSSVIYQTLKDY--DRFSLFLVAARGNKLLRKQIWF-----YFSQLCQVSPFLTG 892
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
D+ G PG + IL ++ Q++ LR
Sbjct: 893 HDLKALGYKPGPQFKQILTDLLNACLDGELGDRQQE-EAWLR 933
>gi|228900216|ref|ZP_04064447.1| CCA-adding enzyme [Bacillus thuringiensis IBL 4222]
gi|228859385|gb|EEN03814.1| CCA-adding enzyme [Bacillus thuringiensis IBL 4222]
Length = 346
Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats.
Identities = 66/344 (19%), Positives = 142/344 (41%), Gaps = 11/344 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RNVPVGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++G+++D G ++ R I +G+A R ED LR++R RF + G +I++
Sbjct: 66 IAMTEEGEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMIRGIRFVSTLGF-SIETKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ F + ++ S+ KFS + + ++
Sbjct: 183 LTATRYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLAIRTRKER 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + + + + ++ +T
Sbjct: 243 GWDTV----LLYKTGIHIAEMAERVYEAM-IESYDPTSVKRVQSMFHVLPIQERQEMNVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G+D++ + PG V +L ++ + + +E + L+
Sbjct: 298 GNDLLNWANKKPGPWVAEMLQKIEEAIVQGNIVNEKERIREWLQ 341
>gi|118443195|ref|YP_878104.1| polyA polymerase family protein [Clostridium novyi NT]
gi|118133651|gb|ABK60695.1| polyA polymerase family protein, putative [Clostridium novyi NT]
Length = 394
Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats.
Identities = 75/417 (17%), Positives = 143/417 (34%), Gaps = 27/417 (6%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
M + + + I +K + IVGGA+RDS++N+ +DIDI ++
Sbjct: 1 MNILDNFDFKELEAINLIKETCSKFNANAYIVGGAIRDSILNVKPKDIDICIESNSINII 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
K + T I+ + D+ R + V + D R
Sbjct: 61 SKL--NFVKEYKYYEKFQTSTIVFENEVEIDLIRCRKEKYEFNGALPKVIPSNIMDDLFR 118
Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
RDFT NA+ + I D N+ I + +ED RI R ++ Y
Sbjct: 119 RDFTCNAIAYNLVNDTIIDPFNGRDDINKGILR-KIHENSYMEDPTRIFRAIKYANRYDF 177
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
K D D + S+ K I + I ++ E K N
Sbjct: 178 KIHDKDEIKESLLKKSMNNISNDRIIREIVSLCKEEKWIHNIFSC--------------N 223
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
E+++ + + + E F + I+ + K + K L ++I+ ++
Sbjct: 224 ELNILNIEKSMFLEDNFLFNYKDYNDRILNVFLSSKGNRGIFIKNSVLCKDIKKAFENYN 283
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
N N+ + + Y +KI N ++L+ I + K
Sbjct: 284 NGITNKNYILNEKDNFSIYNKLKNFSTYDIKILAHFKENK---------YKLLNYIHNLK 334
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ G + + + KK +IL + +N+ + ++ L L +++ +
Sbjct: 335 NIKLNVNGKYLSQLNLNNKKKYKDILNYLYMIKLNTGIRDDEKYLFGNLGEILNVVK 391
>gi|168238165|ref|ZP_02663223.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194736807|ref|YP_002116161.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|226702083|sp|B4TVT8|CCA_SALSV RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|194712309|gb|ACF91530.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197289027|gb|EDY28398.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
Length = 413
Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats.
Identities = 78/412 (18%), Positives = 143/412 (34%), Gaps = 40/412 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y +AD RRD TINAL D G++ID G
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL R ++ + ED LR+LR RF A Y + S+
Sbjct: 114 RDLEARLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLSLMRDMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S Q ++ + + + + ++ +
Sbjct: 231 HTLMTLSMAAMLSPQLDVRFATLCHDLGKGLTPKNLW-PRHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGD 368
+ D +AKL + I+++ I W+KP + G
Sbjct: 290 VPNDLRDLAKLVAEYHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRGR 349
Query: 369 D-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ-LS-QEDLHHLLRKLIA 413
P G+ + + +E + + F+ + +E+L R++ A
Sbjct: 350 TGFEASDYPQGRWLREAWQVAQAVSTKEVVEAGFKGIEIREELTK--RRIAA 399
>gi|113475129|ref|YP_721190.1| polynucleotide adenylyltransferase region [Trichodesmium erythraeum
IMS101]
gi|110166177|gb|ABG50717.1| Polynucleotide adenylyltransferase region [Trichodesmium erythraeum
IMS101]
Length = 909
Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats.
Identities = 76/434 (17%), Positives = 139/434 (32%), Gaps = 44/434 (10%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMN-----LSVQDIDIATT-ILPDRVMRI----FSKTR 67
+ L K + ++GG VRD L++ L + DID+ V K
Sbjct: 478 VAELAEKRGWQLYLIGGGVRDLLLSEFDETLLLTDIDLVVDTCRSKSVANAPAVNLGKAL 537
Query: 68 YKVIPT-----SISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKAD 116
K+ PT + T ++ + DI T R++ V + D
Sbjct: 538 QKIYPTARLEIHGQFQTAALLWHHDLVLDSLWIDIATARTEFYPYPAANPEVEVSSIRQD 597
Query: 117 SLRRDFTINALYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
RRDFTINAL A +++D+ GGL DL+ + I+ + + +ED RI R R
Sbjct: 598 LYRRDFTINALAARLTKPGTGELLDFFGGLLDLQQKQIRVLHA--NSFIEDPTRIYRAVR 655
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS--------------EINKLLEAKNP 218
F G + G+ + + E+ +L+A
Sbjct: 656 FAVRLGFEIESKTEEYIRYAINSGVYDRENVKKGEKNRRAPALETRLKSELKYILQAPYW 715
Query: 219 LNAIVHMYNGGIFKEIFLDV-QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
A+ + N G + I + + +L + +++ + + D L + S
Sbjct: 716 KPALRLLGNLGALRCIHRTLVLDRNLWRQVCLLDRC-LQGFDPDKKLSHWQMRLEVLIVS 774
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ S + + + E V + + L
Sbjct: 775 LESGYRSLVGKNLQLSVDSVKRLEELELAKVMVMENLPKCDTPSQVVWLLREYDLGMLIL 834
Query: 338 NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397
+ D Q+ + W G+D+ G PG++ +L ++
Sbjct: 835 -IIVQCDRWMRRQIWQYLTQWANVKPVFNGNDLKLMGYKPGRQFKLMLDDILAATLDGKV 893
Query: 398 QLSQEDLHHLLRKL 411
E L +
Sbjct: 894 SDRSEAEKFLAQYY 907
>gi|228914211|ref|ZP_04077827.1| CCA-adding enzyme [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228926666|ref|ZP_04089735.1| CCA-adding enzyme [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228932924|ref|ZP_04095789.1| CCA-adding enzyme [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228826727|gb|EEM72496.1| CCA-adding enzyme [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228833042|gb|EEM78610.1| CCA-adding enzyme [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228845415|gb|EEM90450.1| CCA-adding enzyme [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
Length = 346
Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 66/345 (19%), Positives = 144/345 (41%), Gaps = 11/345 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RHVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++G+++D G ++ R I +G+A R ED LR++R RF + G ++++
Sbjct: 66 IAMTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + F + ++ S+ KFS + + +K
Sbjct: 183 LKATQYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRKRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + H + + + + +T
Sbjct: 243 DWDTV----LLYKTGIHIAEMAERVYEAM-IESYDHTSVERVQTLFQALPIKSRQEMDVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G+D++ + PG V ++ ++ + + +E + L++
Sbjct: 298 GNDLLNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 342
>gi|215484628|ref|YP_002326863.1| poly(A) polymerase family protein [Acinetobacter baumannii
AB307-0294]
gi|332856904|ref|ZP_08436313.1| putative polynucleotide adenylyltransferase [Acinetobacter
baumannii 6013150]
gi|332867192|ref|ZP_08437457.1| putative polynucleotide adenylyltransferase [Acinetobacter
baumannii 6013113]
gi|213986666|gb|ACJ56965.1| poly(A) polymerase family protein [Acinetobacter baumannii
AB307-0294]
gi|332726958|gb|EGJ58463.1| putative polynucleotide adenylyltransferase [Acinetobacter
baumannii 6013150]
gi|332734131|gb|EGJ65263.1| putative polynucleotide adenylyltransferase [Acinetobacter
baumannii 6013113]
Length = 465
Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 52/273 (19%), Positives = 115/273 (42%), Gaps = 9/273 (3%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
+ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + + +
Sbjct: 2 IDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGRRCRIIG---RRFE 58
Query: 79 TIKIICRKKYFDITTLRSDLIT-----DGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ ++ ++ T R+ G + + D RRDF+IN LY +
Sbjct: 59 LAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTLYYQPRK 118
Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++ D+ ++D++++T++ +GD R ED +R+LR RF A K + + ++
Sbjct: 119 GIVLDFCKAIDDVKSKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFKIDPAILDIFDVE 178
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ L+ +S R++ E KL + + + + G++K++F D++ + + +
Sbjct: 179 MTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIDFGVWKQLFADIRPDLTPFIQRAAKN 238
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
++ + +
Sbjct: 239 TDQRIQVGKTINPAFFYAVLLWQPFLERCDFYL 271
>gi|168819731|ref|ZP_02831731.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205343533|gb|EDZ30297.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|320087658|emb|CBY97422.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
Length = 413
Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 79/412 (19%), Positives = 146/412 (35%), Gaps = 40/412 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y +AD RRD TINAL D G++ID G
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + + A L+
Sbjct: 114 RDLEARLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S Q ++ + + + + ++ +
Sbjct: 231 HTLMTLSMAAMLSPQLDVRFATLCHDLGKGLTPKNLW-PRHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGD 368
+ D +AKL + I+++ I W+KP + G
Sbjct: 290 VPNDLRDLAKLVAEYHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRGR 349
Query: 369 D-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ-LS-QEDLHHLLRKLIA 413
P G+ + + +E + + F+ + +E+L R++ A
Sbjct: 350 TGFEASDYPQGRWLREAWQVAQAVPTKEVVEAGFKGIEIREELTK--RRIAA 399
>gi|307719260|ref|YP_003874792.1| polyA polymerase family protein [Spirochaeta thermophila DSM 6192]
gi|306532985|gb|ADN02519.1| polyA polymerase family protein [Spirochaeta thermophila DSM 6192]
Length = 364
Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 63/287 (21%), Positives = 114/287 (39%), Gaps = 24/287 (8%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ ++ L K + +VGGAVRD L+ +D DI T P R+ R+F R
Sbjct: 38 HALMVIRRLRKAGHAAYVVGGAVRDLLLGKHPKDFDIVTCATPGRIKRLFPYARV----I 93
Query: 74 SISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ + + + +++Y ++TT RS R + D+ RRDFT+NALY D
Sbjct: 94 GRRFRLVHVYVTKEEYVEVTTFRSA-----RADDPNAYGSIEEDAFRRDFTVNALYYDPF 148
Query: 133 GKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ I D+V G +R R + I ED +R+LR ++ A +
Sbjct: 149 SEEILDFVDGFTHVRERRLVPIIPLDRIFEEDPVRMLRAVKYHARMELEMPKELVRKIRD 208
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------- 241
A + + +S+ R+ EI K+L + + +F + V E+
Sbjct: 209 DAWRLEE-VSASRLTEEIYKILACGEASSVWDALQRFHLFDHLLPHVHEVLGAAGPGIPH 267
Query: 242 --SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286
++ ++ + E D+L+ + + K+
Sbjct: 268 ERWREEFERLDRLVREGEVDRDALIVPFARLFVERDGMRELPFKELY 314
>gi|62181721|ref|YP_218138.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|167551881|ref|ZP_02345634.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|224585007|ref|YP_002638806.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|73619836|sp|Q57JQ5|CCA_SALCH RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|254813697|sp|C0PYX7|CCA_SALPC RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|62129354|gb|AAX67057.1| tRNA nucleotidyl transferase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|205323384|gb|EDZ11223.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|224469535|gb|ACN47365.1| tRNA nucleotidyl transferase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322716207|gb|EFZ07778.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Choleraesuis str. A50]
Length = 413
Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 79/412 (19%), Positives = 146/412 (35%), Gaps = 40/412 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y +AD RRD TINAL D G++ID G
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + + A L+
Sbjct: 114 RDLEARLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S Q ++ + + + + ++ +
Sbjct: 231 HTLMTLSMAAMLSPQLDVRFATLCHDLGKGLTPKNLW-PRHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGD 368
+ D +AKL + I+++ I W+KP + G
Sbjct: 290 VPNDLRDLAKLVAEYHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRGR 349
Query: 369 D-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ-LS-QEDLHHLLRKLIA 413
P G+ + + +E + + F+ + +E+L R++ A
Sbjct: 350 TGFEASDYPQGRWLREAWQVAQAVPTKEVVEAGFKGIEIREELTK--RRIAA 399
>gi|182412522|ref|YP_001817588.1| polynucleotide adenylyltransferase region [Opitutus terrae PB90-1]
gi|177839736|gb|ACB73988.1| Polynucleotide adenylyltransferase region [Opitutus terrae PB90-1]
Length = 463
Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 69/460 (15%), Positives = 135/460 (29%), Gaps = 73/460 (15%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISY 77
L + + + +VGG VRD L+ L +D D+ + + R + + S+
Sbjct: 2 LEAVRRIG-RPRLVGGGVRDWLLGLEAKDFDVEVAGADFETLQRALAPFGATDV-VGRSF 59
Query: 78 GTIKIICR--KKYFDITTLRSDLITDGRYAKVVFTRDWK----ADSLRRDFTINALYADQ 131
G IK+ +D + R + T + D + + RRDFTINA+ D
Sbjct: 60 GVIKVRSAASGAEYDFSLPRRESKTGAGHRGFAVAPDPQLSDADAAARRDFTINAIACDP 119
Query: 132 QG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
++ID G DL R ++ +ED LR+LR F+ A + + +
Sbjct: 120 FTGELIDPHHGQRDLGARVLRHT---SAAFVEDPLRVLRAFQLAARFDLQLAPETAALCR 176
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
A ++ +A P + + + F +V +
Sbjct: 177 TIADTYGELPVERVWAEWEKWATKAAKPSRGLDVL-EQTDWLRHFPEVARLRGTPQEPAW 235
Query: 251 EAE----QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP--------REIRYFLISF 298
E + +D+L S + L M + R + I +
Sbjct: 236 HPEGDVFTHTQHCVDALAANAEWQSSDPARRRLLMLAVLAHDFGKPSTTVRGEKRGAIRW 295
Query: 299 FNCNFNQ---------------------------------------KTLSIPEIKKLFYL 319
+ + +
Sbjct: 296 ISPGHEPAGGPIAKEFLRRIGAPLELDPPVCALVVHHLVHHHGAGGEDNYSDSQVRRLAR 355
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW--------KKPLFPLTGDDVV 371
I L + + N ++ + ++ ++ P + G ++
Sbjct: 356 KLAPATIDDLALVMIADSNGRPPLESPETIALIGELRAKAQALALERAAPKPLVGGRHLI 415
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
G P +L + ++ +F L L R+L
Sbjct: 416 ALGYAPSPAFKPVLDAAFEAQLDGAFADEAGGLDWLRRRL 455
>gi|56415144|ref|YP_152219.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|197364073|ref|YP_002143710.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|73619839|sp|Q5PC82|CCA_SALPA RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702082|sp|B5BG15|CCA_SALPK RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|56129401|gb|AAV78907.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197095550|emb|CAR61115.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 413
Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 79/412 (19%), Positives = 146/412 (35%), Gaps = 40/412 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y +AD RRD TINAL D G++ID G
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYTAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + + A L+
Sbjct: 114 RDLEARLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S Q ++ + + + + ++ +
Sbjct: 231 HTLMTLSMAAMLSPQLDVRFATLCHDLGKGLTPKNLW-PRHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGD 368
+ D +AKL + I+++ I W+KP + G
Sbjct: 290 VPNDLRDLAKLVAEYHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRGR 349
Query: 369 D-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ-LS-QEDLHHLLRKLIA 413
P G+ + + +E + + F+ + +E+L R++ A
Sbjct: 350 TGFEASDYPQGRWLREAWQVAQAVPTKEVVEAGFKGIEIREELTK--RRIAA 399
>gi|229183830|ref|ZP_04311047.1| CCA-adding enzyme [Bacillus cereus BGSC 6E1]
gi|228599679|gb|EEK57282.1| CCA-adding enzyme [Bacillus cereus BGSC 6E1]
Length = 347
Score = 116 bits (289), Expect = 9e-24, Method: Composition-based stats.
Identities = 65/345 (18%), Positives = 145/345 (42%), Gaps = 11/345 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 7 RHVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 66
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++G+++D G ++ R I +G+A R ED LR++R RF + G ++++
Sbjct: 67 IAMTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKT 125
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 126 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 183
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + F + ++ S+ KFS + + +K
Sbjct: 184 LKATQYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRKRKEK 243
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + + + + + + +T
Sbjct: 244 DWDTV----LLYKTGIHIAEMSERVYEAM-IESYDNTSVKRVQTLFEALPIKSRQEMNVT 298
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G+D++ + PG V ++ + ++ + + +E + L++
Sbjct: 299 GNDLLNWANKKPGPWVAEMIQNIEEAIVQGNVVNEKECIREWLQE 343
>gi|161616196|ref|YP_001590161.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Paratyphi B str. SPB7]
gi|189081877|sp|A9N5Y2|CCA_SALPB RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|161365560|gb|ABX69328.1| hypothetical protein SPAB_03999 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 413
Score = 116 bits (289), Expect = 9e-24, Method: Composition-based stats.
Identities = 79/412 (19%), Positives = 146/412 (35%), Gaps = 40/412 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y +AD RRD TINAL D G++ID G
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + + A L+
Sbjct: 114 RDLEARLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTQERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S Q ++ + + + + ++ +
Sbjct: 231 HTLMTLSMAAMLSPQLDVRFATLCHDLGKGLTPKNLW-PRHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGD 368
+ D +AKL + I+++ I W+KP + G
Sbjct: 290 VPNDLRDLAKLVAEYHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRGR 349
Query: 369 D-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ-LS-QEDLHHLLRKLIA 413
P G+ + + +E + + F+ + +E+L R++ A
Sbjct: 350 TGFEASDYPQGRWLREAWQVAQAVPTKEVVEAGFKGIEIREELTK--RRIAA 399
>gi|297180697|gb|ADI16906.1| tRNA nucleotidyltransferase/poly(a) polymerase [uncultured gamma
proteobacterium HF0010_16J05]
Length = 435
Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 67/236 (28%), Positives = 106/236 (44%), Gaps = 12/236 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
D ++++ LN + +VGG +RD+L + +D D+AT D V RIF ++R
Sbjct: 49 DALDVIQQLNAHGFTALLVGGCIRDALCGVQPKDFDVATDAPLDEVKRIFRRSRI----V 104
Query: 74 SISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ + + +++T R + G + + D+ RRDF+INAL
Sbjct: 105 GRRFPIAHVRYGRNLIEVSTFRQSVSENIEHDAQGMILRDKAYGTLQEDAFRRDFSINAL 164
Query: 128 YADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
Y D ++IDYVGGL DL +K IGD R+ ED +RILR RF G
Sbjct: 165 YFDPNKNEIIDYVGGLEDLAAGEVKLIGDPAVRLAEDPVRILRAVRFANKLGFSLDPRII 224
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ A++ I R++ E K+ N H+ + GI + +F S
Sbjct: 225 ELFEDSARRLTAIPP-ARLFDEFLKMFLTGCGENIWQHIRHTGIARVLFPTCNPNS 279
>gi|168243033|ref|ZP_02667965.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168463585|ref|ZP_02697502.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|194442826|ref|YP_002042471.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194449287|ref|YP_002047202.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|197249983|ref|YP_002148134.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197264081|ref|ZP_03164155.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|198241760|ref|YP_002217185.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|200388245|ref|ZP_03214857.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205354119|ref|YP_002227920.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|207858462|ref|YP_002245113.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|226701743|sp|B5REG2|CCA_SALG2 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702077|sp|B5F6A0|CCA_SALA4 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702078|sp|B5FHT9|CCA_SALDC RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702079|sp|B5QZ40|CCA_SALEP RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702080|sp|B4TI55|CCA_SALHS RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702081|sp|B4T674|CCA_SALNS RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|194401489|gb|ACF61711.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194407591|gb|ACF67810.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|195633285|gb|EDX51699.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197213686|gb|ACH51083.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197242336|gb|EDY24956.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197936276|gb|ACH73609.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199605343|gb|EDZ03888.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205273900|emb|CAR38901.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205337890|gb|EDZ24654.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|206710265|emb|CAR34622.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326624961|gb|EGE31306.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|326629238|gb|EGE35581.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 413
Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 79/412 (19%), Positives = 146/412 (35%), Gaps = 40/412 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y +AD RRD TINAL D G++ID G
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + + A L+
Sbjct: 114 RDLEARLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S Q ++ + + + + ++ +
Sbjct: 231 HTLMTLSMAAMLSPQLDVRFATLCHDLGKGLTPKNLW-PRHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGD 368
+ D +AKL + I+++ I W+KP + G
Sbjct: 290 VPNDLRDLAKLVAEYHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRGR 349
Query: 369 D-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ-LS-QEDLHHLLRKLIA 413
P G+ + + +E + + F+ + +E+L R++ A
Sbjct: 350 TGFEASDYPQGRWLREAWQVAQAVPTKEVVEAGFKGIEIREELTK--RRIAA 399
>gi|229195837|ref|ZP_04322596.1| CCA-adding enzyme [Bacillus cereus m1293]
gi|228587610|gb|EEK45669.1| CCA-adding enzyme [Bacillus cereus m1293]
Length = 346
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 67/345 (19%), Positives = 146/345 (42%), Gaps = 11/345 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RHVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++GK++D G ++ R I +G+A R ED LR++R RF + G ++++
Sbjct: 66 IAMTEEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + A+ + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLF--SHLPYLQMSEEKL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + + F + ++ ++ KFS + + +K
Sbjct: 183 LKATQYKWDSFEADIEAWAFFLYCIGEEHPAVFLRQWKFSNKKIKDIVAVLLTIRKRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + H + + + + +T
Sbjct: 243 DWDTV----LLYKTGIHIAEMAERVYEAM-IESYDHTAVNRVQTLFQALPIKSRQEMNVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G+D++ + PG V ++ ++ + + +E + L++
Sbjct: 298 GNDLLNWANKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 342
>gi|228952015|ref|ZP_04114110.1| CCA-adding enzyme [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|229078818|ref|ZP_04211371.1| CCA-adding enzyme [Bacillus cereus Rock4-2]
gi|229189717|ref|ZP_04316731.1| CCA-adding enzyme [Bacillus cereus ATCC 10876]
gi|228593766|gb|EEK51571.1| CCA-adding enzyme [Bacillus cereus ATCC 10876]
gi|228704500|gb|EEL56933.1| CCA-adding enzyme [Bacillus cereus Rock4-2]
gi|228807547|gb|EEM54071.1| CCA-adding enzyme [Bacillus thuringiensis serovar kurstaki str.
T03a001]
Length = 346
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 67/344 (19%), Positives = 143/344 (41%), Gaps = 11/344 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RNVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++GK++D G ++ R I +G+A R ED LR++R RF + G +++
Sbjct: 66 IAMTEEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLEMKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETHGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + + F + ++ S+ KFS + + +K
Sbjct: 183 LKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLAIRTRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + + + + ++ +T
Sbjct: 243 DWDTV----LLYKTGIHIAEMAERVYEAM-IESYDPTSVERVQLMFHALPIQERQEMNVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G+D++ + PG V +L ++ + + +E + L+
Sbjct: 298 GNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 341
>gi|213621650|ref|ZP_03374433.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E98-2068]
Length = 136
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R
Sbjct: 34 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL 98
+ ++ + ++ T R
Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHN 116
>gi|88808104|ref|ZP_01123615.1| possible polyA polymerase [Synechococcus sp. WH 7805]
gi|88788143|gb|EAR19299.1| possible polyA polymerase [Synechococcus sp. WH 7805]
Length = 415
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/388 (15%), Positives = 130/388 (33%), Gaps = 23/388 (5%)
Query: 27 DKSCIVGGAVRDSLM---------NLSVQDIDIATTILPDRVMR----IFSKTRYKVIPT 73
+ +VGGAVRD+L+ L D+D+ + R F R +
Sbjct: 30 GRLALVGGAVRDALLHQCYGASWTGLP--DLDLVLEGSCADLARGLQQRFGAERMPWLQL 87
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ- 132
+GT +++ D+ R + +V + D RRDFT NA+
Sbjct: 88 HERFGTAELMLDGVLIDLAGAREERYPLPGENPIVQPGPLEEDLARRDFTANAMALVLHG 147
Query: 133 ---GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+++D GGL+ L +R + F+ + +D R++R R+ A G
Sbjct: 148 DGSQQLLDPHGGLDHLASRQLVFLH--EASVSDDPTRVIRAARYGARLGFDLDSGSLQQL 205
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
++ + E+ L + + + + + + L + +L L +
Sbjct: 206 KTTLERWPWAWRHGDVVDEVPPALGTRLRMELDLLLEREPWPQALTLLQKWSALPLLDPL 265
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+++E ++ R + + + L + L
Sbjct: 266 LQSEAKLICRLRRAARLQLPLLSALIAAAEEPVALAQRLEIPMQQLRWLEQLQALRHWLE 325
Query: 310 IPEIKKLFYLYGDKVMIAKLKIF--LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
+ + + +G ++L+ A + +L W+ ++
Sbjct: 326 QEVLPQPWRQWGALEWTSRLEQANWSAPVVALAVIETPLCWRPMLRWWGRWRHATASVSA 385
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINS 395
D++ G+ PG +G L + + +
Sbjct: 386 RDLIAQGMQPGPLLGEALRRSRDQVLEG 413
>gi|16761978|ref|NP_457595.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Typhi str. CT18]
gi|29143465|ref|NP_806807.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|213027244|ref|ZP_03341691.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
gi|213161051|ref|ZP_03346761.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213425623|ref|ZP_03358373.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Typhi str. E02-1180]
gi|213581445|ref|ZP_03363271.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Typhi str. E98-0664]
gi|213852379|ref|ZP_03381911.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Typhi str. M223]
gi|289827089|ref|ZP_06545878.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|73619842|sp|Q8Z3M9|CCA_SALTI RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|25288662|pir||AC0892 tRNA adenylyltransferase (EC 2.7.7.25) - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16504281|emb|CAD07729.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139099|gb|AAO70667.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 413
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 77/412 (18%), Positives = 144/412 (34%), Gaps = 40/412 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y +AD RRD TINAL D G++ID G
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL R ++ + ED LR+LR RF A Y + ++ +
Sbjct: 114 RDLEARLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLTLMREMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S Q ++ + + + + ++ +
Sbjct: 231 HTLMTLSMAAMLSPQLDVRFATLCHDVGKGLTPKNLW-PRHHGHGPVGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGD 368
+ D +AKL + I+++ I W+KP + G
Sbjct: 290 VPNDLRDLAKLVAAYHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRGR 349
Query: 369 D-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ-LS-QEDLHHLLRKLIA 413
P G+ + + +E + + F+ + +E+L R++ A
Sbjct: 350 TGFEASDYPQGRWLREAWQVAQAVPTKEVVEAGFKGIEIREELTK--RRIAA 399
>gi|74313592|ref|YP_312011.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Shigella
sonnei Ss046]
gi|123616149|sp|Q3YXI6|CCA_SHISS RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|73857069|gb|AAZ89776.1| tRNA nucleotidyl transferase [Shigella sonnei Ss046]
gi|323168100|gb|EFZ53787.1| poly A polymerase head domain protein [Shigella sonnei 53G]
Length = 412
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 71/396 (17%), Positives = 137/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGA+RD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAIRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTDFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + + + F+
Sbjct: 349 RTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|323978871|gb|EGB73951.1| poly A polymerase head domain-containing protein [Escherichia coli
TW10509]
Length = 412
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 72/396 (18%), Positives = 137/396 (34%), Gaps = 38/396 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +A+L + + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
G+ + + + + + F+
Sbjct: 349 RTGFESADYLQGRWLREAWEVAQSVPTKAVVEAGFK 384
>gi|56461066|ref|YP_156347.1| tRNA nucleotidyltransferase [Idiomarina loihiensis L2TR]
gi|73619780|sp|Q5QY23|CCA_IDILO RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|56180076|gb|AAV82798.1| tRNA nucleotidyltransferase [Idiomarina loihiensis L2TR]
Length = 370
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 67/385 (17%), Positives = 142/385 (36%), Gaps = 38/385 (9%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD L+ L V + D + +++ + + +
Sbjct: 3 VYLVGGAVRDKLLKLPVHERDWVVVGARAEDLLK------QGFLQVGKDF--PVFLHPST 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + + + D RRD TINA+ + G+++D G+
Sbjct: 55 REEYALARTERKSGKGHTSFDVFASPDVTLEDDLARRDLTINAIAQSEDGEIVDPYNGVQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKI 199
D++ R ++ + ED LR+LR RF A + + ++ ++ + A + L
Sbjct: 115 DIKARKLRHV---SEAFTEDPLRVLRVARFAARFAHLDFTVAEETQQMLQEMSASQELSH 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQVIEAEQVFE 257
L ER+W E K L + P + + + ++ + + L +L +
Sbjct: 172 LVPERVWREWEKSLLTQTPTVFLTLLRDIQALSQVLPGITADDSQLQRLQRTSAYSDSVT 231
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI---- 313
+ SL I + +S+ ++ ++P R + N T +PE
Sbjct: 232 LRFASLF-----IEQETPESLKQFCRQLAIPNHYRDSALLARNHEDFITTPELPEKAQLA 286
Query: 314 ---KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
K++ Y + + L++ A + + + + L L +
Sbjct: 287 ALLKQIDYWRRPEKLEQLLQLRQAEYSESKQQKSIAAQHKKLRSGAEKAA---ALNAGTL 343
Query: 371 VKYGIPPGKKVGNILVHCKQEWINS 395
+ G GK +G+ L +++ +
Sbjct: 344 QQQGFT-GKALGDALREQREQILAE 367
>gi|229069188|ref|ZP_04202479.1| CCA-adding enzyme [Bacillus cereus F65185]
gi|228713940|gb|EEL65824.1| CCA-adding enzyme [Bacillus cereus F65185]
Length = 346
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 66/344 (19%), Positives = 143/344 (41%), Gaps = 11/344 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RNVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++GK++D G ++ R I +G+A R ED LR++R RF + G +++
Sbjct: 66 IAMTEEGKMVDLFAGQEAIQQRKIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLEMKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETHGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + + F + ++ ++ KFS + + +K
Sbjct: 183 LKATQYKWDSFETDIEAWAFFLYCIGEEHPAVFLRQWKFSNKKIKDIVAVLLAIRTRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + + + + ++ +T
Sbjct: 243 DWDTV----LLYKTGIHIAEMAERVYEAM-IESYDPTSVERVQLMFHALPIQERQEMNVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G+D++ + PG V +L ++ + + +E + L+
Sbjct: 298 GNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 341
>gi|168231806|ref|ZP_02656864.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194470503|ref|ZP_03076487.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194456867|gb|EDX45706.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205333820|gb|EDZ20584.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 413
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 79/413 (19%), Positives = 147/413 (35%), Gaps = 42/413 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y +AD RRD TINAL D G++ID G
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + + A L+
Sbjct: 114 RDLEARLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S + + + + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLS--PQLDVRFATLCHDVGKGLTPKNLWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ D +AKL + I+++ I W+KP + G
Sbjct: 289 RVPNDLRDLAKLVAEYHDLIHTFPVLQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ-LS-QEDLHHLLRKLIA 413
P G+ + + +E + + F+ + +E+L R++ A
Sbjct: 349 RTGFEASDYPQGRWLREAWQVAQAVPTKEVVEAGFKGIEIREELTK--RRIAA 399
>gi|15639584|ref|NP_219034.1| polynucleotide adenylyltransferase (pcnB) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189025823|ref|YP_001933595.1| polynucleotide adenylyltransferase [Treponema pallidum subsp.
pallidum SS14]
gi|3322888|gb|AAC65568.1| polynucleotide adenylyltransferase (pcnB) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189018398|gb|ACD71016.1| polynucleotide adenylyltransferase [Treponema pallidum subsp.
pallidum SS14]
gi|291059969|gb|ADD72704.1| polynucleotide adenylyltransferase [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 370
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 10/234 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D+ I ++ L ++ IVGGAVRD + + +D DI T +P R+ R+F +R
Sbjct: 33 DAGAIRVVEALVGAGYETYIVGGAVRDLVAGRTPKDFDIVTGAVPSRIRRLFRNSRI--- 89
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+ + + C + ++++T RS + V + D+ RRDF++NALY D
Sbjct: 90 -IGRRFRIVHVSCGSQLYEVSTFRSRV----GEGSVCVPGTLEEDAWRRDFSVNALYYDP 144
Query: 132 QGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
VID VGG+ DL+ R ++ + +ED +R+LR + E +I +
Sbjct: 145 LRNVVIDCVGGMVDLKRRRVRPLIPLRSIFVEDPVRMLRALKCSV-MCESSIPFSVRRSI 203
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
++ L S R+ E K+L + + + + + V D
Sbjct: 204 RRSVSLLGGCSPSRLTDEFVKILFSGRSAALVRALCGYQLLLYLQPSVHYFMRD 257
>gi|323966585|gb|EGB62018.1| poly A polymerase head domain-containing protein [Escherichia coli
M863]
gi|327251842|gb|EGE63528.1| poly A polymerase head domain protein [Escherichia coli STEC_7v]
Length = 412
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 69/345 (20%), Positives = 126/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A+L + + I+++ I W+KP
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQ 333
>gi|229178043|ref|ZP_04305415.1| CCA-adding enzyme [Bacillus cereus 172560W]
gi|228605531|gb|EEK62980.1| CCA-adding enzyme [Bacillus cereus 172560W]
Length = 346
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 67/344 (19%), Positives = 143/344 (41%), Gaps = 11/344 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RNVPVGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++GK++D G ++ R I +G+A R ED LR++R RF + G +++
Sbjct: 66 IAMTEEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLEMKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETHGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + + F + ++ S+ KFS + + +K
Sbjct: 183 LKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLAIRTRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + + + + ++ +T
Sbjct: 243 DWDTV----LLYKTGIHIAEMAERVYEAM-IESYDPTSVERVQLMFHALPIQERQEMNVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G+D++ + PG V +L ++ + + +E + L+
Sbjct: 298 GNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 341
>gi|226327176|ref|ZP_03802694.1| hypothetical protein PROPEN_01041 [Proteus penneri ATCC 35198]
gi|225204394|gb|EEG86748.1| hypothetical protein PROPEN_01041 [Proteus penneri ATCC 35198]
Length = 371
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 115/344 (33%), Gaps = 23/344 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD L+ + V+D D P+ +++ + K P +
Sbjct: 3 IYLVGGAVRDQLLQIPVKDRDWVVVGATPEELLQQGYQQVGKDFPVF--------LHPDT 54
Query: 88 YFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ + R++ + Y + D RRD TINA+ G+ ID G++
Sbjct: 55 HEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLARRDLTINAIAYSANGEYIDPYQGID 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS- 202
D+ R ++ + ED LR+LR RF A + + +
Sbjct: 115 DINARLLRHV---SDAFSEDPLRVLRVARFAARFAPLGFSVAPETLQLMKTMAQSGELNA 171
Query: 203 ---ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
ER+W E K E+ P + G K +F ++ + + E
Sbjct: 172 LTAERVWKETEKAFESHAPQVYFEVLRQCGALKILFPEIDALFGVPAPEKWHPEIDTGIH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+L ++ ++ + + + + + E Y
Sbjct: 232 AMMVLNIASQLTDDIAVRFSALCHDL--GKGLTPPENWPHHHGHGPAGVPLVEALCQRYR 289
Query: 320 Y-GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L H + + I+++ I W+KP
Sbjct: 290 IPNHIRDLARLTAKFHDHIHRIDRMRPSKIIRLFDAIDAWRKPE 333
>gi|300865327|ref|ZP_07110138.1| Phosphoesterase, RecJ-like protein [Oscillatoria sp. PCC 6506]
gi|300336630|emb|CBN55288.1| Phosphoesterase, RecJ-like protein [Oscillatoria sp. PCC 6506]
Length = 827
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 78/482 (16%), Positives = 144/482 (29%), Gaps = 99/482 (20%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLM-----NLSVQDIDIATTI-------------------- 54
+ + + +VGGAVRD L+ +LS+ DID+
Sbjct: 346 KIAEQRGWQLYLVGGAVRDLLLAASENSLSLTDIDLVVDGYHDLEVENVDRVQEKSIVNT 405
Query: 55 -------------------------LPDRVMRIFSKTR-YKVIPTSISYGTIKIICRKK- 87
+ + + + T ++ K
Sbjct: 406 EEEREYSVVNYPINNPTVKNHSLQSPAVELASALQELYPAARLDVHGQFQTAALLWHKDS 465
Query: 88 -----YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----KVIDY 138
+ DI T R++ V + D RRDFTINAL +++D+
Sbjct: 466 ELDSLWVDIATARTEFYPYPAANPEVEASSIRQDLYRRDFTINALAVRLNHPRAGELLDF 525
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198
GGL DL+ R I+ + + +ED RI R RF G + G+
Sbjct: 526 FGGLEDLKGRKIRVLHA--NSFIEDPTRIYRAVRFAVRLGFQIERQTEGYIRHAVDSGIY 583
Query: 199 ILSSERIWS----------EINKLLEAKNPLNAIVHMYNGGIFKEIFL--DVQEISLDQL 246
E+ +L+A +A+ + + G + I D+ L QL
Sbjct: 584 YRIQGENDRAPALETRLKSELKHILQAPYWKSALQMLGDLGALRCIHPTLDLDRHLLWQL 643
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
V ++ + V ++ +++ + +L +
Sbjct: 644 RLVDRYLKIRNKAEKNGSEKEVKSPIANQLQGININDWLIRLEVLIAYLAPDYRGKVAAN 703
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD--------------------TC 346
+ KL ++ K+K+ +L NL +
Sbjct: 704 LQLPVDSVKLLQDLEEE----KIKLMASLPMCNLPSKLVLMLRNYQLPMLILIAVQCPRR 759
Query: 347 FILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
Q+ + W PL G+D+ G PG + +L ++ + +
Sbjct: 760 ERRQIWEYLTKWANITPPLNGNDLKALGYKPGPQFKQMLDDLLVATLDGALSDRVSAISF 819
Query: 407 LL 408
L
Sbjct: 820 LA 821
>gi|229016893|ref|ZP_04173821.1| CCA-adding enzyme [Bacillus cereus AH1273]
gi|229023099|ref|ZP_04179613.1| CCA-adding enzyme [Bacillus cereus AH1272]
gi|228738245|gb|EEL88727.1| CCA-adding enzyme [Bacillus cereus AH1272]
gi|228744454|gb|EEL94528.1| CCA-adding enzyme [Bacillus cereus AH1273]
Length = 346
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 70/345 (20%), Positives = 145/345 (42%), Gaps = 11/345 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RNVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++G++ID G +R + I +GDA R ED LR++R RF + G ++++
Sbjct: 66 IAMTEEGEMIDLFAGQEAIRLKEITTVGDAADRFQEDALRMMRGIRFVSTLGF-SLEAKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLQELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + + F + ++ S+ KFS + + + +K
Sbjct: 183 LKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLAIRSRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + + + + + +T
Sbjct: 243 EWDTV----LLYKTGIHIAEMAERVYEAI-IESYNSASVKQVQSLFHALPIKNRQEMNVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G+D++ + PG V IL + ++ + +E++ L K
Sbjct: 298 GNDLLSWADKKPGPWVAEILQNIEEAIVQGDLVNKKENIREWLEK 342
>gi|206901253|ref|YP_002251206.1| polyA polymerase family protein [Dictyoglomus thermophilum H-6-12]
gi|206740356|gb|ACI19414.1| polyA polymerase family protein [Dictyoglomus thermophilum H-6-12]
Length = 845
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 78/393 (19%), Positives = 132/393 (33%), Gaps = 28/393 (7%)
Query: 5 VQHKWFHDSDLINILSLLNK----GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
+ S +IL L K +GG VRD L+ S D+DI ++
Sbjct: 444 ISEDKIRSSPWRDILEELRKITSQYNISIYAIGGFVRDLLLGQSNFDLDIVVEGDIQLII 503
Query: 61 -RIFSKTRYKVIPTSISYGTI-KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
+I K KVI T +GT I+ K DI T R + + V D
Sbjct: 504 SKIMDKWEGKVI-THPQFGTSEIILSDGKRIDIATARIEHYEEPGSLPKVERSSLWLDLK 562
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAH 176
RRDFTINAL + + L + + +ED RILR R A
Sbjct: 563 RRDFTINALAMSLNEENFGEIIDLYGGLEDLTRKELRILHNLSFVEDPTRILRGIRLEAR 622
Query: 177 YGEKNIDSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G + + + G ++ ER+ EI +L+ P + + IF
Sbjct: 623 LGFTFEEKTFKLLKEAIENGFLNKIAKERLKDEIILILQESQPEKVLKRLEELNALSYIF 682
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+ +L + E + + +++ + ++ K + +
Sbjct: 683 P------IRKLPKNFEKKNQILKNEYPQKYELQILNIISEATLDEGKKWLQDLKFPQKIA 736
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
F Q ++ E + + L L N+ +++L +
Sbjct: 737 YQFILLKHYQNISTLSEKDII------NLSDLPDDFLLLLSLNSKKTGKDILRIRLLKE- 789
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
K + L G D++ G GK +G +L
Sbjct: 790 ----KGVPYLKGKDLLNMGFK-GKIIGELLKQL 817
>gi|161506232|ref|YP_001573344.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. arizonae serovar 62:z4,z23:-- str.
RSK2980]
gi|189081876|sp|A9MPV9|CCA_SALAR RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|160867579|gb|ABX24202.1| hypothetical protein SARI_04425 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 413
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 79/412 (19%), Positives = 145/412 (35%), Gaps = 40/412 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y +AD RRD TINAL D G++ID G
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPWHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + + A L+
Sbjct: 114 RDLEARLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADDTLALMREMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S Q ++ + + + + ++ +
Sbjct: 231 HTLMTLSMAAMLSPQLDVRFATLCHDLGKGLTPKNLW-PRHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGD 368
+ D +AKL + I+++ I W+KP + G
Sbjct: 290 VPNDLRDLAKLVAEFHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRGR 349
Query: 369 D-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ--LSQEDLHHLLRKLIA 413
P G+ + + +E + + F+ +E+L R++ A
Sbjct: 350 TGFEASDYPQGRWLREAWQVAQAVPTKEVVEAGFKGIAIREELTK--RRIAA 399
>gi|322613608|gb|EFY10549.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322621200|gb|EFY18058.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322624263|gb|EFY21097.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322627999|gb|EFY24788.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322633116|gb|EFY29858.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322636306|gb|EFY33014.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322643480|gb|EFY40042.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322644801|gb|EFY41336.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648610|gb|EFY45057.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322653662|gb|EFY49988.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657770|gb|EFY54038.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322663871|gb|EFY60070.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322669118|gb|EFY65269.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322672889|gb|EFY68996.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322678121|gb|EFY74184.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322681297|gb|EFY77330.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322687773|gb|EFY83740.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|323195585|gb|EFZ80762.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323199734|gb|EFZ84824.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323202518|gb|EFZ87558.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323207994|gb|EFZ92940.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323212454|gb|EFZ97271.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323215064|gb|EFZ99812.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323222794|gb|EGA07159.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323224125|gb|EGA08418.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323230449|gb|EGA14567.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323235200|gb|EGA19286.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323239240|gb|EGA23290.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323244402|gb|EGA28408.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323247019|gb|EGA30985.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323253500|gb|EGA37329.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323256194|gb|EGA39930.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323262630|gb|EGA46186.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323267275|gb|EGA50759.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323269323|gb|EGA52778.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
Length = 413
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 76/412 (18%), Positives = 143/412 (34%), Gaps = 40/412 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y +AD RRD TINAL D G++ID G
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL R ++ + ED LR+LR RF A Y + ++
Sbjct: 114 RDLEARLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMRDMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S Q ++ + + + + ++ +
Sbjct: 231 HTLMTLSMAAMLSPQLDVRFATLCHDLGKGLTPKNLW-PRHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGD 368
+ D +AKL + I+++ I W+KP + G
Sbjct: 290 VPNDLRDLAKLVAEYHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRGR 349
Query: 369 D-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ-LS-QEDLHHLLRKLIA 413
P G+ + + ++ + + F+ + +E+L R++ A
Sbjct: 350 TGFEASDYPQGRWLREAWQVAQAVPTKKVVEAGFKGIEIREELTK--RRIAA 399
>gi|229121178|ref|ZP_04250415.1| CCA-adding enzyme [Bacillus cereus 95/8201]
gi|228662297|gb|EEL17900.1| CCA-adding enzyme [Bacillus cereus 95/8201]
Length = 346
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 66/345 (19%), Positives = 143/345 (41%), Gaps = 11/345 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RHVPVGLEHGTVIVVENGAPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++G+++D G ++ R I +G+A R ED LR++R RF + G ++++
Sbjct: 66 IAMTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + F + ++ S+ KFS + + +K
Sbjct: 183 LKATQYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRKRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + H + + + + +T
Sbjct: 243 DWDTV----LLYKTGIHIAEMAERVYEAM-IESYDHTSVERVQTLFQALPIKSRQEMDVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G+D++ + PG V ++ ++ + + +E + L++
Sbjct: 298 GNDLLNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 342
>gi|218550309|ref|YP_002384100.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia fergusonii ATCC 35469]
gi|226702065|sp|B7LQD4|CCA_ESCF3 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|218357850|emb|CAQ90494.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase
and 2'nucleotidase and phosphatase [Escherichia
fergusonii ATCC 35469]
Length = 412
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 70/345 (20%), Positives = 128/345 (37%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDDGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP +++ G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLHDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +AKL + + I+++ I W+KP
Sbjct: 289 RVPNEIRDLAKLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQ 333
>gi|168262835|ref|ZP_02684808.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|205348429|gb|EDZ35060.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
Length = 413
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 79/413 (19%), Positives = 147/413 (35%), Gaps = 42/413 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y +AD RRD TINAL D G++ID G
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + + A L+
Sbjct: 114 RDLEARLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S + + + + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLS--PQLDVRFATLCHDVGKGLTPKNLWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ D +AKL + I+++ I W+KP + G
Sbjct: 289 RVPNDLRDLAKLVAEYHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ-LS-QEDLHHLLRKLIA 413
P G+ + + +E + + F+ + +E+L R++ A
Sbjct: 349 RTGFEASDYPQGRWLREAWQVAQAVPTKEVVEAGFKGIEIREELTK--RRIAA 399
>gi|153823791|ref|ZP_01976458.1| poly(A) polymerase [Vibrio cholerae B33]
gi|126518690|gb|EAZ75913.1| poly(A) polymerase [Vibrio cholerae B33]
Length = 172
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 16/142 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R
Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R G + D+ R
Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150
Query: 120 RDFTINALYADQQGKVIDYVGG 141
RDFTINA+Y + I G
Sbjct: 151 RDFTINAMYYNIADYSIHDYAG 172
>gi|228984715|ref|ZP_04144887.1| CCA-adding enzyme [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|228774913|gb|EEM23307.1| CCA-adding enzyme [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
Length = 347
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 67/345 (19%), Positives = 144/345 (41%), Gaps = 11/345 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 7 RHVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 66
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++GK++D G ++ R I +G+A R ED LR++R RF + G ++++
Sbjct: 67 IAMTEEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKT 125
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 126 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 183
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + F + ++ S+ KFS + + +K
Sbjct: 184 LKATQYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRKRKEK 243
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + H + + + + +T
Sbjct: 244 DWDTV----LLYKTGIHIAEMAERVYEAM-IESYDHTSVNRVQTLFQALPIKSRQEMNVT 298
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G+D++ + PG V ++ ++ + + +E + L++
Sbjct: 299 GNDLLNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 343
>gi|148238570|ref|YP_001223957.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
WH 7803]
gi|147847109|emb|CAK22660.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
WH 7803]
Length = 415
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 65/404 (16%), Positives = 133/404 (32%), Gaps = 44/404 (10%)
Query: 21 LLNKGEDKSCIVGGAVRDSLM---------NLSVQDIDIATTILPDRVM----RIFSKTR 67
L + +VGGAVRD+L L D+D+ V + R
Sbjct: 25 RLQGHG-RLALVGGAVRDALRHQLHGASWQGLP--DLDLVLEGSCSAVALGLQQRLGTER 81
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ YGT ++ D+ R + VV + D RRDFT+NA+
Sbjct: 82 VSWLQLHERYGTAELRLDGVLIDLAAARQECYPAPGENPVVQPGPLEDDLWRRDFTVNAM 141
Query: 128 YA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--- 180
D +++D GGL L R + + + +D R++R R+ A G +
Sbjct: 142 ALVLQADGSQQLLDPHGGLAHLAARQLVLLHA--ASVADDPTRVIRAARYGARLGFELDS 199
Query: 181 ------NIDSDGLVASIKAKKGLKILSS---ERIWSEINKLLEAKNPLNAIVHMYNGGIF 231
+ + + L + R+ E++ LLE + A+ + +
Sbjct: 200 GSLQQLQTTLERWPWAWRQGDALDRVPPALGTRLRMELDLLLEREPWPQALALLQHWSAL 259
Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291
+ +Q S +LS+ + + + S L + + ++ ++
Sbjct: 260 PLLDPLLQ--SKVKLSRRLRRAARLQLPLLSALIAAAGEPVALAQRLQIPIQQLRWLEQL 317
Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ + ++ A + A+ + +
Sbjct: 318 QELRQWL-EQEVLPQPWRQWGAREWTARLEQANWPAPVVALAAV-------EAPLCWRPL 369
Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
L W+ ++ +D++ G+ PG +G L + + +
Sbjct: 370 LRWWGRWRHATAAVSANDLIAEGLQPGPLLGEALRRSRDQVLEG 413
>gi|282899755|ref|ZP_06307718.1| Polynucleotide adenylyltransferase region protein
[Cylindrospermopsis raciborskii CS-505]
gi|281195370|gb|EFA70304.1| Polynucleotide adenylyltransferase region protein
[Cylindrospermopsis raciborskii CS-505]
Length = 423
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 73/414 (17%), Positives = 137/414 (33%), Gaps = 47/414 (11%)
Query: 29 SCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMR-IFSKTRYKVIPTSISYGTIKIICR 85
+ +VGGAVRD ++ D+D +V R I + +++
Sbjct: 25 AYMVGGAVRDGILGRSQDYLDLDFIIPDNAVKVARAIAQNYGAGFVLLDGKRNIARVVFP 84
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ D D RRDFTINA+ + + + G
Sbjct: 85 QGTVDFA--------------QQDGESLLTDLHRRDFTINAIAYNPYTQELMDPLGGCKD 130
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+ + + + +D LR++R +R A I+ ++SERI
Sbjct: 131 IESGLLRMISPQN-LQDDPLRLMRAYRQAAQLNFV-IEPHTQATIRNLSSIFCQVASERI 188
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL-- 263
+E+ LL++ + + G+ + F+ S+D+L V A Q L
Sbjct: 189 RTEVGHLLQSAVGTFWLKTAWEDGLLGQFFIYATRESVDKLIAVDPAVQAIGENWSELGE 248
Query: 264 ----------------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+ + + + + + R +I+ K
Sbjct: 249 QLEKPIRDSMKTRWLDIAKLGCLVNPAPEIAEQELGEMTYSRVEIRSIITALRLFPQMKQ 308
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW--------K 359
+ +++ + + + ++ I LAL + L + L++ ++
Sbjct: 309 ANSMSLREQYCWFREVGVVFSSTIVLALAQDMLNTKSHKHSLELYRPLVKRYLNPDDLVA 368
Query: 360 KPLFPLTGDD-VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
P +TG + ++ IPP VG IL SQ L L RKLI
Sbjct: 369 HPSPLVTGKEVIIALNIPPSPLVGEILQEIAIAQAEGKVNNSQGAL-ALARKLI 421
>gi|16766504|ref|NP_462119.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|167990243|ref|ZP_02571343.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|73619845|sp|Q8ZLY4|CCA_SALTY RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|16421761|gb|AAL22078.1| tRNA nucleotidyl transferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|205331228|gb|EDZ17992.1| multifunctional CCA protein [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261248334|emb|CBG26171.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995398|gb|ACY90283.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Typhimurium str.
14028S]
gi|301159757|emb|CBW19276.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312914231|dbj|BAJ38205.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Typhimurium str.
T000240]
gi|321225886|gb|EFX50940.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|323131565|gb|ADX18995.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Typhimurium str. 4/74]
gi|332990070|gb|AEF09053.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
Length = 413
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 79/412 (19%), Positives = 146/412 (35%), Gaps = 40/412 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y +AD RRD TINAL D G++ID G
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDAGQIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + + A L+
Sbjct: 114 RDLEARLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S Q ++ + + + + ++ +
Sbjct: 231 HTLMTLSMAAMLSPQLDVRFATLCHDLGKGLTPKNLW-PRHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGD 368
+ D +AKL + I+++ I W+KP + G
Sbjct: 290 VPNDLRDLAKLVAEYHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRGR 349
Query: 369 D-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ-LS-QEDLHHLLRKLIA 413
P G+ + + +E + + F+ + +E+L R++ A
Sbjct: 350 TGFEASDYPQGRWLREAWQVAQAVPTKEVVEAGFKGIEIREELTK--RRIAA 399
>gi|297569506|ref|YP_003690850.1| polynucleotide adenylyltransferase [Desulfurivibrio alkaliphilus
AHT2]
gi|296925421|gb|ADH86231.1| Polynucleotide adenylyltransferase [Desulfurivibrio alkaliphilus
AHT2]
Length = 466
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 12/176 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + + ++ L ++ +VGG VRD L+ +D DI+T P ++ +IF +R
Sbjct: 38 DREALKVMHRLRDEGFRAYLVGGGVRDLLLGKKPKDFDISTDARPGQLRKIFRNSRI--- 94
Query: 72 PTSISYGTIKI-ICRKKYFDITTLRSD--LITDGRY----AKVVFTRDWKADSLRRDFTI 124
+ +++ K ++ T R +G A D D+ RRD TI
Sbjct: 95 -IGRRFRLVQVFFHGGKIIEVATFRCRSEFDLNGGEIETLASDNTFGDPAEDAFRRDLTI 153
Query: 125 NALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
NAL+ + VIDY GG+ DLR ++ +GD R++ D +R+LR R A G
Sbjct: 154 NALFYEIENFSVIDYTGGVEDLRLGLVRLVGDPDRRLIRDPVRMLRAIRHAARSGF 209
>gi|285017637|ref|YP_003375348.1| multifunctional cca protein [includes: cca-adding enzyme (tRNA
nucleotidyltransferase) (tRNA
adenylyl-/cytidylyl-transferase) (tRNA
cca-pyrophosphorylase) (tRNA-nt); 2'-nucleotidase; 2',
3'-cyclic phosphodiesterase ; phosphatase] [Xanthomonas
albilineans GPE PC73]
gi|283472855|emb|CBA15360.1| hypothetical multifunctional cca protein [includes: cca-adding
enzyme (trna nucleotidyltransferase) (trna
adenylyl-/cytidylyl-transferase) (trna
cca-pyrophosphorylase) (trna-nt); 2'-nucleotidase; 2',
3'-cyclic phosphodiesterase ; phosphatase] [Xanthomonas
albilineans]
Length = 417
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 63/403 (15%), Positives = 134/403 (33%), Gaps = 59/403 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD+L+ L D D PD+++ + K + P +
Sbjct: 2 KTYLVGGAVRDALLGLPPGDRDWVVVGATPDQLLALGYKQVGRDFPVF--------LHPH 53
Query: 87 KYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQG-KVIDYVGG 141
+ R++ + Y + + D RRDFTINA+ D+ +++D GG
Sbjct: 54 SGEEYALARTERKSGRGYHGFVIQADPSVTLEEDLQRRDFTINAIARDEDDGRLLDPYGG 113
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL- 200
+ DL+ R ++ +G A ED LR+LR RF A ++
Sbjct: 114 VRDLQRRVLRHVGPA---FGEDPLRVLRAARFMARLAPLGFQIAPDTMALMRAMAASGEL 170
Query: 201 ---SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
ER+W E+ + L + P + +++ + + ++ + E
Sbjct: 171 EALVPERVWQELRRSLASAQPSAFLRTLHDATALRCVLPELDALYGVPQRAEYHPEIDTG 230
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ + ++ + + + + ++ + +
Sbjct: 231 RHQELVSDMAARLAPGNALIGFAALTHDLGKALTPPAEWPRHLMHEQRGVPALHGLCERL 290
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL--------------- 362
+ + +A++ L+ + L + ++L ++KP
Sbjct: 291 KVPQEHRQLAEIACREHLNVHRLAELRDRTVHELLQRCDGFRKPERIAQLALVCEADKRG 350
Query: 363 ----------------------FPLTGDDVVKYGIPPGKKVGN 383
+ D+V G+ G ++G
Sbjct: 351 RLGSEDADYPQGRDLQHLHAAALAINARDLVAQGL-SGPQIGE 392
>gi|158338560|ref|YP_001519737.1| polyA polymerase [Acaryochloris marina MBIC11017]
gi|158308801|gb|ABW30418.1| polyA polymerase [Acaryochloris marina MBIC11017]
Length = 442
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 82/431 (19%), Positives = 148/431 (34%), Gaps = 62/431 (14%)
Query: 29 SCIVGGAVRDSLMNLSV--QDIDIATTILPDRVMRIFSK-TRYKVIPTSISYGTIKIICR 85
+C+VGG VRD+L+N D+D R S+ + +++
Sbjct: 23 ACLVGGCVRDALLNRHTAYLDLDFVLPKAAVETARRVSESCNAGFVLLDAERDIARVVFP 82
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLND 144
D + D RRD+TINA+ V+D + G D
Sbjct: 83 DATADFAL--------------QVGDSLEEDLQRRDYTINAIAYHPFSDTVVDPLMGQQD 128
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
L ++ I + + ED LR+LR +R A G I+ + LK +++ER
Sbjct: 129 LDAGVLRMIAAKN--LEEDPLRLLRAYRQAAQLGF-TIEPQTQANIRQLTPQLKGIAAER 185
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL- 263
I E++ LL + ++ G+ F SL L + +A + + ++ L
Sbjct: 186 IKVELSYLLSDSKATPWVHQLWQDGLLSTSFPHASSTSLAFLPAIDQAASLLQKEVPDLA 245
Query: 264 -----------------------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
V + + K+ R + + N
Sbjct: 246 TAFHQELNERAQGKEAAQRTLLSTTKWVSLLSDNPTQAEITLKQMKFSRGEIHVITRVLN 305
Query: 301 CNFNQKTLSIPEIKK-----LFYLYGDKVMIAKLKIFLALHYNNLTHQDTC--------- 346
K L E + + D A + + LA+ + +
Sbjct: 306 GWPRLKQLLQQEHCRRVDQFYLFQDADTTFPAVVMVTLAVELMQQSLRGAETPSCLPALK 365
Query: 347 -FILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
+I + L+ + P L+G ++K + PG +VG++L S S+E L
Sbjct: 366 PWIAEYLNPLSALAHPQPLLSGSALMKSLHLSPGPEVGHLLSQLTLAQAEGSITTSEEAL 425
Query: 405 HHLLRKLIASS 415
L + L++S+
Sbjct: 426 -ALAQTLVSST 435
>gi|125548115|gb|EAY93937.1| hypothetical protein OsI_15711 [Oryza sativa Indica Group]
Length = 542
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 61/296 (20%), Positives = 106/296 (35%), Gaps = 26/296 (8%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
I W N+L L +VGG VRD +M + +D DI TT +V F
Sbjct: 92 IPDEAW-------NVLHRLRSRGYDVYLVGGCVRDLIMKKTPKDFDIITTADLRQVKDTF 144
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD---------LITDGRYAKVVFTRDWK 114
S + + + ++++ + + + WK
Sbjct: 145 S---GSAVIVGRRFPICHVYENNSIVEVSSFNTYARGSTSNQIYTSKSPHCSKNDYIRWK 201
Query: 115 ADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
+ RDFTIN L + + + DY GG+ D++ ++ + A ED RILR R
Sbjct: 202 -NCQGRDFTINGLMFNPYAEKIYDYFGGIEDIKKAKVRTVIPAGTSFQEDCARILRAIRI 260
Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
A G N + + L RI EIN +L + ++ ++ G+ +
Sbjct: 261 AARLGF-NFPKETAYYVRTLACSVARLDKGRILMEINYMLAYGSAEASLRLLWRFGLLEH 319
Query: 234 IFL-DVQEISLDQLSQVIEAEQ---VFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ S + + + V K+D+ L SIL++ +
Sbjct: 320 LLPFQAAYFSSTRFKRKDKGTNMLLVLFSKLDNFLAPNRPCHNSLWISILALHEAL 375
>gi|312381951|gb|EFR27559.1| hypothetical protein AND_05670 [Anopheles darlingi]
Length = 350
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 89/291 (30%), Positives = 140/291 (48%), Gaps = 16/291 (5%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L ++++L + + I GGA D+DIATT P ++ IF+ +
Sbjct: 58 IFTQELKDLIALFKRYNYEIRIAGGA-----------DVDIATTATPTQMKDIFTTENIR 106
Query: 70 VIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
++ +GTI K+ F+ITTLR D++TDGR+A+VV T DW D+ RRD TIN++
Sbjct: 107 MVNMNGEKHGTITPRINDKECFEITTLRLDVVTDGRHAEVVHTTDWLLDANRRDLTINSM 166
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY--GEKNIDSD 185
+ G + DY G DL+ R + F+GD RI EDYLRILR+FRF+ D++
Sbjct: 167 FLGFDGTLYDYFYGYEDLQKRRVAFVGDPDTRIKEDYLRILRYFRFYGRIAECANRHDAE 226
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L GL +S ERIW E K+L M + L + ++D+
Sbjct: 227 TLRIITNNATGLAKISGERIWQEWKKILTGNFGTELTTEMIKCNLAVHCGLP-ESPNVDE 285
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
V E + F K++ + L+ Q+ L+ + ++ + I
Sbjct: 286 FIHVSENVRAFSGKLEPMTLVAALLHTQEDAIKLNSRLRLTVFERELIYFI 336
>gi|115458124|ref|NP_001052662.1| Os04g0395900 [Oryza sativa Japonica Group]
gi|21742315|emb|CAD40772.1| OSJNBb0039F02.3 [Oryza sativa Japonica Group]
gi|113564233|dbj|BAF14576.1| Os04g0395900 [Oryza sativa Japonica Group]
gi|215767631|dbj|BAG99859.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 542
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 61/296 (20%), Positives = 106/296 (35%), Gaps = 26/296 (8%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
I W N+L L +VGG VRD +M + +D DI TT +V F
Sbjct: 92 IPDEAW-------NVLHRLRSRGYDVYLVGGCVRDLIMKKTPKDFDIITTADLRQVKDTF 144
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD---------LITDGRYAKVVFTRDWK 114
S + + + ++++ + + + WK
Sbjct: 145 S---GSAVIVGRRFPICHVYENNSIVEVSSFNTYARGSTSNQIYTSKSPHCSKNDYIRWK 201
Query: 115 ADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
+ RDFTIN L + + + DY GG+ D++ ++ + A ED RILR R
Sbjct: 202 -NCQGRDFTINGLMFNPYAEKIYDYFGGIEDIKKAKVRTVIPAGTSFQEDCARILRAIRI 260
Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
A G N + + L RI EIN +L + ++ ++ G+ +
Sbjct: 261 AARLGF-NFPKETAYYVRTLACSVARLDKGRILMEINYMLAYGSAEASLRLLWRFGLLEH 319
Query: 234 IFL-DVQEISLDQLSQVIEAEQ---VFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ S + + + V K+D+ L SIL++ +
Sbjct: 320 LLPFQAAYFSSTRFKRKDKGTNMLLVLFSKLDNFLAPNRPCHNSLWISILALHEAL 375
>gi|33864176|ref|NP_895736.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. MIT 9313]
gi|33635760|emb|CAE22085.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. MIT 9313]
Length = 419
Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 72/433 (16%), Positives = 148/433 (34%), Gaps = 47/433 (10%)
Query: 1 MVSIVQ-HKWFHDSDL-INILSLLNKGEDKS-----CIVGGAVRDSLMNLSVQ------- 46
M S+V+ F L + +L++L + + +VGGAVRD L++ V
Sbjct: 1 MESLVKPEPGFDGPGLPMGLLAVLQQVASEVGIKRLALVGGAVRDGLLHR-VHFDPWRGL 59
Query: 47 -DIDIATTILPDRVMRIFSKTRYK----VIPTSISYGTIKIICRKKYFDITTLRSDLITD 101
D+D+ + + + + +YGT++++ D+ T R +
Sbjct: 60 PDLDLVVEGSAVVLAKALRRHLGPEQLPQLRVHGAYGTVELVVDGVLLDLATARQETYAS 119
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRIL 161
V + D RRDFT+NA+ + G + + + + +
Sbjct: 120 PGQNPQVTEGHLEEDLARRDFTVNAMALELPGMTLLDPHDGWAALAMR-QLVFLHSNSVA 178
Query: 162 EDYLRILRFFRFFAHYGE-----------KNIDSDGLVASI-KAKKGLKILSSERIWSEI 209
+D R++R R+ A G + S +A K S R+ E+
Sbjct: 179 DDPTRVVRGARYAARLGFVLAPEALAQVRSTLQSWPWAWHPGEAPKLAPPALSTRLRMEL 238
Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV- 268
LLE + A+ H+ + G + +Q + + E + + L
Sbjct: 239 ELLLEREPWQKAVAHLQDWGALVLLDEGLQA--DQNWHRRMRWAWRLELPLLTALVAGAA 296
Query: 269 -LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
++ ++ + + ++ L++ + T S + G +
Sbjct: 297 DPLAMAERLQLPQLQQRLLAEAAELQILLASLEVAESLSTWSPARWCETLEGNGWQPEAV 356
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
L + L + +L W++ P++ ++ G PG +G L
Sbjct: 357 ALCVCLGV----------PMWRPLLRWWGRWRQVKSPVSAQALIDQGWRPGPALGAELQR 406
Query: 388 CKQEWINSSFQLS 400
+ E I+ L
Sbjct: 407 LRLELIDQQVALR 419
>gi|291567636|dbj|BAI89908.1| polyA polymerase [Arthrospira platensis NIES-39]
Length = 419
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 61/412 (14%), Positives = 131/412 (31%), Gaps = 47/412 (11%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRV---MRIFSKTRYKVIPTSISYGTIKIICR 85
+ +VGGAVRD+L++ +V D+D+ +L + V I S + + +++
Sbjct: 25 AYLVGGAVRDALLSRAVGDLDLDFVVLSEAVNTAKTIASHYQAGFVLLDAERQIARVVFP 84
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLND 144
D + D RRDFTIN + K D G D
Sbjct: 85 GVTVDFAQA--------------EGGSLEVDLGRRDFTINTIAYHPITKTFFDPYQGQQD 130
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
L+ ++ I + + +D LR+LR +R A G + A ++ +
Sbjct: 131 LKQGLMRMISREN--LADDPLRLLRGYRQAAQLGFVIEPETKQTIADLASLLPRVAAERI 188
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEWKIDS 262
L I I + D+L +
Sbjct: 189 RTELGYLLNTPLGVPKLIEA----WKIGLISPWFSSLGDRCDRLKNLDHVAAAVSQTYPP 244
Query: 263 L------------------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF--NCN 302
L + + ++ +D+ + R +++
Sbjct: 245 LAKPLSESVRETIKMSQLAIAKLATMTSEDRDQAEAELITLKYSRVEIRGVLALLGTFQQ 304
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
++ I++ ++L+ + + L++ + T I L+ P
Sbjct: 305 LQPTPIADLSIRQQYFLFANVGEFFPALVVLSIAAGASLQEFTTLINHYLNPDDAIAHPQ 364
Query: 363 FPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
++G ++ K G+ P +G++L + ++ + +K++
Sbjct: 365 PVISGKLLMAKLGLSPSPLLGDLLQEIQIAKAEGQISTREDAIAIASQKMLE 416
>gi|209524846|ref|ZP_03273392.1| Polynucleotide adenylyltransferase region [Arthrospira maxima
CS-328]
gi|209494725|gb|EDZ95034.1| Polynucleotide adenylyltransferase region [Arthrospira maxima
CS-328]
Length = 419
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 61/412 (14%), Positives = 131/412 (31%), Gaps = 47/412 (11%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRV---MRIFSKTRYKVIPTSISYGTIKIICR 85
+ +VGGAVRD+L++ +V D+D+ +L + V I S + + +++
Sbjct: 25 AYLVGGAVRDALLSRAVGDLDLDFVVLSEAVNTAKTIASHYQAGFVLLDAERQIARVVFP 84
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLND 144
D + D RRDFTIN + K D G D
Sbjct: 85 GVTVDFAQA--------------EGGSLEVDLGRRDFTINTIAYHPITKTFFDPYQGQQD 130
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
L+ ++ I + + +D LR+LR +R A G + A ++ +
Sbjct: 131 LKQGLMRMISREN--LADDPLRLLRGYRQAAQLGFVIEPETKQTIADLASLLPRVAAERI 188
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEWKIDS 262
L I I + D+L +
Sbjct: 189 RTELGYLLNTPLGVPKLIEA----WKIGLISPWFSSLGDRCDRLKNLDHVAAAVSQTYPP 244
Query: 263 L------------------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF--NCN 302
L + + ++ +D+ + R +++
Sbjct: 245 LAKPLRESVRETIKMSQLAIAKLATMTSEDRDQAEAELITLKYSRVEIRGVLALLGTFQQ 304
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
++ I++ ++L+ + + L++ + T I L+ P
Sbjct: 305 LQPTPIADLSIRQQYFLFANVGEFFPALVVLSIAAGASLQEFTTLINHYLNPDDAIAHPQ 364
Query: 363 FPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
++G ++ K G+ P +G++L + ++ + +K++
Sbjct: 365 PVISGKLLMAKLGLSPSPLLGDLLQEIQIAKAEGQISTREDAIAIASQKMLE 416
>gi|228938747|ref|ZP_04101350.1| CCA-adding enzyme [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228971629|ref|ZP_04132251.1| CCA-adding enzyme [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228978238|ref|ZP_04138615.1| CCA-adding enzyme [Bacillus thuringiensis Bt407]
gi|228781255|gb|EEM29456.1| CCA-adding enzyme [Bacillus thuringiensis Bt407]
gi|228788042|gb|EEM35999.1| CCA-adding enzyme [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228820922|gb|EEM66944.1| CCA-adding enzyme [Bacillus thuringiensis serovar berliner ATCC
10792]
Length = 346
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 66/344 (19%), Positives = 144/344 (41%), Gaps = 11/344 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RNVPVGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++G+++D G ++ R I +G+A R ED LR++R RF + G ++++
Sbjct: 66 IAMTEEGEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSALGF-SLETKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + + F + ++ S+ KFS + + +K
Sbjct: 183 LKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLAIRTRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + + + + + +T
Sbjct: 243 DWDTV----LLYKTGIYIAEMAERVYEAM-IESYDPTSVKRVQSMFHALPIQGRQEMNVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G+D++ + PG V ++L ++ + + +E + L+
Sbjct: 298 GNDLLNWANKKPGPWVADMLQKIEEAIVKGNVVNEKERIREWLQ 341
>gi|228907268|ref|ZP_04071128.1| CCA-adding enzyme [Bacillus thuringiensis IBL 200]
gi|228852408|gb|EEM97202.1| CCA-adding enzyme [Bacillus thuringiensis IBL 200]
Length = 346
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 66/344 (19%), Positives = 141/344 (40%), Gaps = 11/344 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RNVPVGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++G+++D G ++ R I +G+A R ED LR++R RF + G ++++
Sbjct: 66 IAMTEEGEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSALGF-SLETKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ F + ++ S+ KFS + + +K
Sbjct: 183 LTATRYKWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLAIRTRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + + + + + +T
Sbjct: 243 GWDTV----LLYKTGIHIAEMAERVYEAM-IESYDPTSVKRVQSMFHVLPIQGRQEMNVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G+D++ + PG V +L ++ + + +E + L+
Sbjct: 298 GNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 341
>gi|224134120|ref|XP_002321741.1| predicted protein [Populus trichocarpa]
gi|222868737|gb|EEF05868.1| predicted protein [Populus trichocarpa]
Length = 481
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 101/288 (35%), Gaps = 19/288 (6%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+L L K + +VGG VRD ++ + +D DI T+ V+R F + I
Sbjct: 40 SRPTKKVLDGLKKNGYEVYLVGGCVRDLILKRTPKDFDIITSAELKEVVRTFPQC----I 95
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---------KADSLRRDF 122
+ + ++++ + + + LRRD
Sbjct: 96 IVGKRFPICHVHVGDTIVEVSSFSTTGPKFRLDLSNGISPPIDCDEKDYVRWKNCLRRDL 155
Query: 123 TINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
TIN L D ++ DYVGGL D++ ++ + A ED RILR R A G +
Sbjct: 156 TINGLMFDPYKRIVYDYVGGLEDIKKAKVRTVVPASTSFQEDCARILRAVRIAARLGFRF 215
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----D 237
++ L L ++RI E+N +L + ++ ++ G+ + +
Sbjct: 216 TRETAHFIKNLSRSLL-RLDNQRIMMEMNYMLAYGSAEASLRILWKFGLLELLLPFQAAY 274
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + +D L IL+ K
Sbjct: 275 FVRDGFKRQDKRSNMLLCLFSNLDKHLAPDRPCHNSLWVGILAFHKAL 322
>gi|172038295|ref|YP_001804796.1| poly(A) polymerase/tRNA nucleotidyltransferase family protein
[Cyanothece sp. ATCC 51142]
gi|171699749|gb|ACB52730.1| poly(A) polymerase/tRNA nucleotidyltransferase family protein
[Cyanothece sp. ATCC 51142]
Length = 422
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 72/408 (17%), Positives = 142/408 (34%), Gaps = 45/408 (11%)
Query: 29 SCIVGGAVRDSLMN--LSVQDIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKIICR 85
+ +VGG VRDSL+N + D+D L + S + +++
Sbjct: 26 AYLVGGMVRDSLLNYQQNYLDLDFVLPELVIETAKKISNQYNAGFVVLDAERKIARVVFE 85
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA-DQQGKVIDYVGGLND 144
+ D + D RRDFTINA+ Q +VID + GL D
Sbjct: 86 QGTVDFA--------------QQEGDTIETDLRRRDFTINAIAYNFHQQQVIDPLNGLED 131
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
L+ +TI+ I + + +D LR+ R +R A + ID ++ + +++ER
Sbjct: 132 LQTKTIRMIHVKN--LQDDPLRLFRAYRQAAQL-KFKIDPKTRQTIVQLSSLITQVATER 188
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI-------------E 251
+ +E+N LL + M G+ K F + +L L ++ E
Sbjct: 189 VQTELNYLLGNSRGSYWLSEMEKDGLLKIHFPHINHDNLQLLKEIDRVLELLLNKLKETE 248
Query: 252 AEQVFEWKIDSLLRFIV--------LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
+ F + + + + + + + +++ +
Sbjct: 249 FKSFFNLQDNQEIYKSSLIQRARLTCLVSNNTEIAKRELMNLKYSNQDIKAILNILSHLP 308
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIA-KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ K Y ++ + +AL I L+ P+
Sbjct: 309 WLRGNQQNISFKNLYFLFLELGDNFPIFALVALAKKVNNQLIFKLIDHYLNPQDKVAHPI 368
Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+TG D++K + P ++G +L + ++E+ + R
Sbjct: 369 ALITGHDLIKNLNMKPSPQLGQLLTEVSIAQVEGKIS-TKEEALNFAR 415
>gi|311278031|ref|YP_003940262.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Enterobacter cloacae SCF1]
gi|308747226|gb|ADO46978.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Enterobacter cloacae SCF1]
Length = 412
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 76/393 (19%), Positives = 135/393 (34%), Gaps = 36/393 (9%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD+L+ L V+D D P +++ + + P + +
Sbjct: 4 FLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVF--------LHPDSH 55
Query: 89 FDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ + Y + D LRRD T+NAL D G VID GG D
Sbjct: 56 EEYALARTERKSGSGYTGFTCYAAPDVTLEQDLLRRDLTVNALAQDDDGTVIDPYGGQRD 115
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK----GLKIL 200
L+NR ++ + ED LR+LR RF A Y + ++ L L
Sbjct: 116 LQNRLLRHV---SPAFSEDPLRVLRVARFAARYAHLSFRIADETMTLMRDMTAAGELAHL 172
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ ER+W E L +NP + + G K +F +V + E
Sbjct: 173 TPERVWKETESALTTRNPQVYFQTLRDCGALKVLFPEVDALYGVPAPAKWHPEIDTGVHT 232
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
L ++S ++ + F + + + ++ +
Sbjct: 233 LMTLTMAAMLSPAVDVRFATLCHDLGKGLTPKAFW-PRHHGHGPAGVKLVEQLCARLRVP 291
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD- 369
+ +AKL + I+++ I W+KP + G
Sbjct: 292 NEIRDLAKLVAEFHDLIHTFPILKPATIVKLFDAIDAWRKPQRVEQIALTSEADVRGRTG 351
Query: 370 VVKYGIPPGKKVGNILVHCK----QEWINSSFQ 398
P G+ + + + I++ F+
Sbjct: 352 FEACDYPQGRLLREAWEVARAVPTKAVIDAGFK 384
>gi|42562367|ref|NP_174130.2| polynucleotide adenylyltransferase family protein [Arabidopsis
thaliana]
gi|332192789|gb|AEE30910.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis
thaliana]
Length = 541
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 14/228 (6%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+L+ L K + +VGG VRD +++ +D D+ TT V ++F + +
Sbjct: 104 VLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAELKEVRKVFPGCQI----VGRRF 159
Query: 78 GTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDW--KADSLRRDFTINALYA 129
+ ++++ + R RD+ + L+RDFT+N L
Sbjct: 160 PICHVYVDDIIIEVSSFSTSARTGKAPNKSFRRPAGCDERDYIRWKNCLQRDFTVNGLMF 219
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D V DY+GG+ DLRN ++ + A+ +ED RILR R A G +
Sbjct: 220 DPSENVVYDYIGGVEDLRNSKVRTVSAANLSFVEDTARILRAIRIAARLGFSLTKDVAIS 279
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ L L RI EIN +L + ++ ++ G+ + +
Sbjct: 280 VKELSSSLL-RLDPSRIRMEINYMLAYGSAEASLRLLWRFGLMEILLP 326
>gi|124515673|gb|EAY57182.1| putative polyA polymerase family protein [Leptospirillum rubarum]
Length = 419
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 73/404 (18%), Positives = 139/404 (34%), Gaps = 16/404 (3%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK-- 81
K+ +VGG VRD LM +ID+A + +++ I + T K
Sbjct: 16 GRKAYVVGGWVRDMLMLRRPTRPEIDLALEGDAVQWGEAIAESFGVRIGRVSEFRTCKID 75
Query: 82 IICRKKY--FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV---- 135
++ K DI + R+D VV D RRDF++NA+ +
Sbjct: 76 VLHDKVPVRIDIASCRTDDYPVPGGMPVVTPSSIYEDLYRRDFSVNAMAFPLEEPFQNSF 135
Query: 136 --IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+D VGG DL + ++ + +D +RI R FRF G
Sbjct: 136 LLMDPVGGYEDLVRKELRILSP--ASFEDDPVRIFRLFRFQERLGFTPDLRTSRAFESAR 193
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
G + SS+ + + + AIV + E L ++S + +V +
Sbjct: 194 LNGAFLRSSKSRLWDEIQAAIREESRCAIVFRWLLEKPWENALPSLKMSSPRRKRVFAWD 253
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS-FFNCNFNQKTLSIPE 312
++ + ++ + R +R + + +P
Sbjct: 254 RLTVHESVFSPLGRFWREMLLLLALFYGLPRQECDRGLRLLGVPEKRARVLRESLFPVPS 313
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
++ + L+ + + L+D LTG D++K
Sbjct: 314 ENGREKTAQSDILPNLSPQMIFLNLVRGGPETFASFEKALADRDQQPLGEMSLTGRDLIK 373
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
GI P ++GN+L+ ++ S+++ +R + S +
Sbjct: 374 EGIEPSPEMGNLLIEIRELR-EKGILNSRQEELDWVRAWVRSRR 416
>gi|294054248|ref|YP_003547906.1| Polynucleotide adenylyltransferase region [Coraliomargarita
akajimensis DSM 45221]
gi|293613581|gb|ADE53736.1| Polynucleotide adenylyltransferase region [Coraliomargarita
akajimensis DSM 45221]
Length = 445
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 73/445 (16%), Positives = 142/445 (31%), Gaps = 69/445 (15%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82
++ +VGG VRD ++ ++ +D+D+ L + +++ S+G
Sbjct: 2 QAAGGRALLVGGCVRDGMLGIATKDVDVEVYGLSVDTVEAELAKEFRLDTVGRSFGV--F 59
Query: 83 ICRKKYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQ-QGKVID 137
I + DI RS+ T ++ + + RRDFTINA+ D ++ID
Sbjct: 60 ILKGLEMDIALPRSESRTGPKHTDFEVKGDPAMTPQEAAARRDFTINAICYDPLNDELID 119
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
G DL + ++ + +ED LR+LR +F A + + +
Sbjct: 120 SYNGQADLLAKRLRHV---SDAFIEDPLRVLRGMQFIARFDLEADPETVDLCRQLNP--- 173
Query: 198 KILSSERIWSEINKLL-EAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
+ L ER+W E KL+ + + + + G + +Q V+
Sbjct: 174 EHLPEERLWEEWKKLILKGTQLSKGLNFLKDCGWLPYFPELEALVGCEQDPTWHPEGDVW 233
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSL-------------PREIRYFLI------- 296
L + + + ++ + IR
Sbjct: 234 THTGHCLDAYAANRIGDEWEDLIVGFAVLCHDFGKPDTSYFDAQSKRIRSPRHDVLGVPV 293
Query: 297 ---SFFNCNFNQKTLSI-----PEIKKLFYLYGDKVMIAKLKIFLALHYN---------- 338
++K + + L+ D A ++ A
Sbjct: 294 AERFLARMTRHKKVFEEVLPLVEQHMRPLALFRDGAGDAAIRRLAARVKRLDRLCRVAYA 353
Query: 339 ----------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
+ + + + I P + G +V+ GI PG G IL
Sbjct: 354 DKSGRPPIIVENFEEGDWLLERAAALAIKDNAPKPLMLGRHLVELGIKPGPHFGKILDRA 413
Query: 389 KQEWINSSFQLSQEDLH---HLLRK 410
+ ++ F ++L LRK
Sbjct: 414 YEAQLDGVF----DELDGGVAFLRK 434
>gi|229138330|ref|ZP_04266924.1| CCA-adding enzyme [Bacillus cereus BDRD-ST26]
gi|228645095|gb|EEL01333.1| CCA-adding enzyme [Bacillus cereus BDRD-ST26]
Length = 346
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 66/345 (19%), Positives = 145/345 (42%), Gaps = 11/345 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RHVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++GK++D G ++ R I +G+A R ED LR++R RF + G ++++
Sbjct: 66 IAMTEEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + A+ + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLF--SHLPYLQMSEEKL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + + F + ++ ++ KFS + + +K
Sbjct: 183 LKATQYKWDSFEADIEAWAFFLYCIGEEHPAVFLRQWKFSNKKIKDIVAVLLTIRKRKEK 242
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
Y G + +++ A+ + H + + + + +T
Sbjct: 243 DWDTV----FLYKTGIHIAEMAERVYEAM-IESYDHTAVNRVQTLFQALPIKNRQEMNVT 297
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G+D++ + PG V ++ ++ + + +E + L++
Sbjct: 298 GNDLLNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 342
>gi|24114356|ref|NP_708866.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Shigella
flexneri 2a str. 301]
gi|30064404|ref|NP_838575.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Shigella
flexneri 2a str. 2457T]
gi|73619846|sp|Q821A6|CCA_SHIFL RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|24053520|gb|AAN44573.1| tRNA nucleotidyl transferase [Shigella flexneri 2a str. 301]
gi|30042661|gb|AAP18385.1| tRNA nucleotidyl transferase [Shigella flexneri 2a str. 2457T]
gi|313648172|gb|EFS12618.1| poly A polymerase head domain protein [Shigella flexneri 2a str.
2457T]
gi|332754636|gb|EGJ85002.1| poly A polymerase head domain protein [Shigella flexneri 2747-71]
Length = 412
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 69/345 (20%), Positives = 125/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ LSV+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYTAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A+L + I+++ I W+KP
Sbjct: 289 RVPNEIRDLARLVAEFHDLIRTFPMLNPKTIVKLFDSIDAWRKPQ 333
>gi|302877439|ref|YP_003846003.1| Polynucleotide adenylyltransferase region [Gallionella
capsiferriformans ES-2]
gi|302580228|gb|ADL54239.1| Polynucleotide adenylyltransferase region [Gallionella
capsiferriformans ES-2]
Length = 414
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 126/344 (36%), Gaps = 18/344 (5%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKII 83
+ VGGAVRD L+ L V+D D P+ ++ P + +
Sbjct: 3 ANAQIYCVGGAVRDRLLGLPVKDHDWVVVGSTPEAMIA------QGYQPVGRDF--PVFL 54
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYV 139
K + + R++ T Y V + D +RRDFT+NA+ D G +ID
Sbjct: 55 HPKTHEEYALARTERKTAPGYKGFVVHAAPDVTLEQDLMRRDFTVNAIAQDTAGNLIDPH 114
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLK 198
GG+ DLR ++ + ED +RILR RF A +G ++ L+ + +
Sbjct: 115 GGMTDLRAGILRHV---SSAFNEDPVRILRAARFAARFGFHIAPETQALMCDMVNNGEVD 171
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L SER+W E+++ L + P + + G +I ++ + E
Sbjct: 172 ALVSERVWQELSRALMEQTPARFFTTLRDCGALAKIMPEIDALFGIPQVAKYHPEIDCGL 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
++ + + ++ ++ + + + + +
Sbjct: 232 HTLMVIEDAAQHDYALEVRYAALTHDLGKA-TTAPDMLPRHLGHELRSVALVKTLSERIR 290
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
G+ +A L + + + I+++ W++P
Sbjct: 291 ATGECRDLALLAARFHGDIHRASELRSDTIIKLFQSSDAWRRPE 334
>gi|333000116|gb|EGK19699.1| poly A polymerase head domain protein [Shigella flexneri K-218]
Length = 412
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 69/345 (20%), Positives = 125/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ LSV+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A+L + I+++ I W+KP
Sbjct: 289 RVPNEIRDLARLVAEFHDLIRTFPMLNPKTIVKLFDSIDAWRKPQ 333
>gi|170078104|ref|YP_001734742.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
PCC 7002]
gi|169885773|gb|ACA99486.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
PCC 7002]
Length = 407
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 64/394 (16%), Positives = 140/394 (35%), Gaps = 32/394 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQ--DIDIATTILPDRVMR-IFSKTRYKVIPTSISYGTIKIIC 84
++C+VGGAVRD+L+ D D R I K + + +++
Sbjct: 25 EACLVGGAVRDALLQRQSDYIDFDFVVPKKAVETARAIAKKYQAGFVVLDEMRQIARVVF 84
Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLN 143
R+ D + D RRD+ +NA+ + ++D + GL
Sbjct: 85 RQGTLDFA--------------QQEGDSLERDLRRRDYCVNAIAYHIRSDCLVDPLNGLA 130
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203
DL N+ ++ + + + +D LR+LR +R A G +D+ + +K +++E
Sbjct: 131 DLENKVLRMVTPEN--LADDPLRLLRAYRQAAQLGF-TLDAATRAQIRELAPLIKNIAAE 187
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE------ 257
RI E+N LL + + G+ + SLD++ ++ Q F
Sbjct: 188 RIQHELNYLLHHPQGDRWLELAFQDGLLAHWLPAADQTSLDRMQRLTAIGQEFAAVYPEF 247
Query: 258 --WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC--NFNQKTLSIPEI 313
L + + D + + PR + + +
Sbjct: 248 ATETAWLALGKLACLVGSDPEKAQQAIARLKYPRYELRTVSTVIEMLPQLLASQAQPLSL 307
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-K 372
++ ++ + + +A + + + + + P+ L+G D++ +
Sbjct: 308 REQYFFFQTVKGTFPILALVARSFGLSSASLAPLLQRYFTAHDPVAHPVSLLSGKDLIHE 367
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
+ P ++G++L + + E +
Sbjct: 368 LHLSPSPQIGHLLTEIQVAHVEGKIHTKAEAIEW 401
>gi|218295059|ref|ZP_03495895.1| Polynucleotide adenylyltransferase region [Thermus aquaticus
Y51MC23]
gi|218244262|gb|EED10787.1| Polynucleotide adenylyltransferase region [Thermus aquaticus
Y51MC23]
Length = 819
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 68/407 (16%), Positives = 137/407 (33%), Gaps = 42/407 (10%)
Query: 13 SDLINILSLLNKGEDK-SCIVGGAVRDSLMNLSVQDIDIATT--ILPDRVMRIFSKTRYK 69
+L L + + +VGGAVRD+L+ S DID+ + + V R +
Sbjct: 443 EGARRVLLALKEAFPQGVYLVGGAVRDALLLRSGPDIDLVLEPGVRVEEVARFLVERFGG 502
Query: 70 VIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
++GT ++ D+ R ++ V D RRD+T+NA+
Sbjct: 503 SYALHYAFGTGRVRLPFGLSVDLAESREEVYPYPGALPEVRPAPIAKDLERRDYTVNAMA 562
Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+++D GGL+DL R ++ + +ED RI+R R A + +
Sbjct: 563 LSLATLELLDPYGGLSDLEARLLRPLHP--LSFVEDPSRIVRGARLAARLAFRFAEEALK 620
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ +++ ++ + + + L +L L
Sbjct: 621 ALPPALLP-----------EVLATASKSRLRDELLLTLEEDTFLEALTLLEALSALYPLY 669
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
++ ++ + + L+ + + +L ++ + R L
Sbjct: 670 RL----RLPPKEPFARLKGEGKALVEARLLLLLYFQEDPMERAQALALPRRLREGLAL-- 723
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
G AL L + + + + L G
Sbjct: 724 ---------LLRAGRGEA-----DREALEKEPLRSAFLALFPEKEAWLAERPRVLM---G 766
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
D+++ G+ PG K+G IL + + +E+L L R+L+
Sbjct: 767 RDLLEMGLKPGPKIGEILKRVAEARARGEVRTFEEEL-ALARRLVGD 812
>gi|15229038|ref|NP_190452.1| polynucleotide adenylyltransferase family protein / RNA recognition
motif (RRM)-containing protein [Arabidopsis thaliana]
gi|7576221|emb|CAB87911.1| putative protein [Arabidopsis thaliana]
gi|332644940|gb|AEE78461.1| polynucleotide adenylyltransferase domain and RNA recognition
motif-containing protein [Arabidopsis thaliana]
Length = 881
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 57/290 (19%), Positives = 104/290 (35%), Gaps = 19/290 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L+ L +VGG VRD ++ + +D DI T+ V+R FS+
Sbjct: 75 MISKPTRIVLNGLKSKGYDVYLVGGCVRDLILKRTPKDFDILTSAELREVVRSFSRCEI- 133
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK---------VVFTRDWKADSLRR 120
+ + ++++ + R + + L+R
Sbjct: 134 ---IGKKFPICHVHIGNDMIEVSSFSTSAQNSLRNTRTGSGKSNGSYDEDSIRFNNCLQR 190
Query: 121 DFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTIN L D K + DY+GG+ D++ ++ + A ED RILR R A G
Sbjct: 191 DFTINGLMFDPYAKVIYDYLGGIEDIKKAKVRTVFHAGTSFQEDSARILRGTRIAARLGF 250
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL--- 236
I + ++ L RI E+N +L + ++ ++ GI + +
Sbjct: 251 -TISKETAHFLKNLSFLVQRLHRGRILLEMNYMLAYGSAEASLRLLWKFGILEILLPIQA 309
Query: 237 -DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + + +D LL +IL++ K
Sbjct: 310 AYLVRTGFKRRDKRSNLLLSLFGNLDKLLAPDKPCHSSLWLTILALHKAL 359
>gi|332140340|ref|YP_004426078.1| tRNA nucleotidyltransferase [Alteromonas macleodii str. 'Deep
ecotype']
gi|226702033|sp|B4RVV4|CCA_ALTMD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|327550362|gb|AEA97080.1| tRNA nucleotidyltransferase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 397
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 67/399 (16%), Positives = 127/399 (31%), Gaps = 49/399 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+L+N V + D + P ++ + + K
Sbjct: 2 QVYLVGGAVRDALLNRKVIERDYVVVGATPQEMLS------QGFTQVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D LRRD T+NA+ D G +ID GG
Sbjct: 54 TQEEYALARTERKSGKGYTGFVCDASSSVTLEEDLLRRDLTVNAIAQDNLGNLIDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL N ++ + ED LR+ R RF Y ++
Sbjct: 114 KDLENHLLRHV---SEAFSEDPLRVFRVARFATRYAYLGFTIANETMALMQSMAESGELS 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ---EISLDQLSQVIEAEQV 255
LS+ER+W E + L K P + + F +++ + ++ L + E
Sbjct: 171 TLSAERVWQETKRSLLEKTPHVFFTVLNQAHGLNDWFAELESNLDAAIATLKTAVALENA 230
Query: 256 FEWKID------------------------SLLRFIVLISWQDKKSILSMAKKFSLPREI 291
+ D ++RF L++ +++ + + + ++
Sbjct: 231 AKENFDKSGQLENKPLETKIPESSSSGTTTLIIRFTALLAHLNEEEAKRLCNRLKVQNQL 290
Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI-FLALHYNNLTHQDTCFILQ 350
+I L G + L + H +
Sbjct: 291 SEIVILACKFKDFLLNTQNSPADLLALFNGCDAWRRSERFTLLLKAFAPYAHYKDLDWQR 350
Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
I + + D++ G+ G + L K
Sbjct: 351 QQEHIENALSAANQVNVQDIIATGVK-GPAIKEALNQAK 388
>gi|281602445|gb|ADA75429.1| Multifunctional CCA protein [Shigella flexneri 2002017]
gi|332752729|gb|EGJ83114.1| poly A polymerase head domain protein [Shigella flexneri K-671]
gi|333014921|gb|EGK34266.1| poly A polymerase head domain protein [Shigella flexneri K-304]
Length = 412
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 69/345 (20%), Positives = 125/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ LSV+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYTAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A+L + I+++ I W+KP
Sbjct: 289 RVPNEIRDLARLVAEFHDLIRTFPMLNPKTIVKLFDSIDAWRKPQ 333
>gi|332998659|gb|EGK18255.1| poly A polymerase head domain protein [Shigella flexneri VA-6]
Length = 412
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 69/345 (20%), Positives = 126/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ LSV+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A+L + + I+++ I W+KP
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQ 333
>gi|284929283|ref|YP_003421805.1| tRNA nucleotidyltransferase/poly(A) polymerase [cyanobacterium
UCYN-A]
gi|284809727|gb|ADB95424.1| tRNA nucleotidyltransferase/poly(A) polymerase [cyanobacterium
UCYN-A]
Length = 485
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 72/424 (16%), Positives = 143/424 (33%), Gaps = 39/424 (9%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLM-----NLSVQDIDIATT--------ILPDRVMR 61
L I+ +VGG VRD + + +QDID+ + +
Sbjct: 54 LEEIIQEAELKAWSLYVVGGIVRDLFLLKKNQKILIQDIDLVVDSNTSPSNIGAGIELAQ 113
Query: 62 IFSKTRYKVI-PTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWK 114
K +V+ + T + K DITT R++ + +
Sbjct: 114 TLKKRYPEVLLTVYHDFKTASLSWNKDKKYGSVQIDITTSRTETYLYPSANPKIQIAPIE 173
Query: 115 ADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170
D RRDFTINAL QGK++D GL+DLR IK + LED +RI R
Sbjct: 174 QDLFRRDFTINALAVKLTSPAQGKLLDLFMGLSDLRKAQIKVLHPN--SFLEDPIRIYRA 231
Query: 171 FRFFAHYGE-------KNIDSDGLVASIKAKKGLKILSSERIW---SEINKLLEAKNPLN 220
+F + I + + K + +E+ +L++ +
Sbjct: 232 VKFAIRLDFDIEAQTIQYIYNATKNQTYDHLKLEVNIIPSLTIRLKNELRSILQSNSWRK 291
Query: 221 AIVHMYNGGIFKEIFLDVQ-EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279
++ + G ++ + + + + + + +++++L+ L
Sbjct: 292 SLELLSCFGALYYLYPGLILNCEILRQMRYVSRLMKYSDPHHKTIKWLLLLEILLSSIPL 351
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
K ++ ++ I + N ++K + ++ K +
Sbjct: 352 KERKIIAINLQLPSESIKRLSEIQNINKEINQGLRKYSKISDKVNLLNKFYWIDLILVAA 411
Query: 340 LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399
+ ++ + + K PL G D+ G PG + L + ++ +
Sbjct: 412 QSKKEIRYF--IWRYFTKLSKISSPLNGSDLKNIGYLPGPRYKEALTILLDKTLDGEIKT 469
Query: 400 SQED 403
QE
Sbjct: 470 KQEA 473
>gi|116515068|ref|YP_802697.1| hypothetical protein BCc_128 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|116256922|gb|ABJ90604.1| poly(A) polymerase I [Buchnera aphidicola str. Cc (Cinara cedri)]
Length = 407
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 70/367 (19%), Positives = 129/367 (35%), Gaps = 21/367 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + +L LNK ++ +VGG VRD L+ +D DIAT PD + ++F R
Sbjct: 17 SRNSMKVLYRLNKLGYEAYLVGGGVRDLLLGKKPKDFDIATNAKPDEIRKLFKNCRL--- 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT--------------DGRYAKVVFTRDWKADS 117
+ +I + + +++T R+ G + D+
Sbjct: 74 -IGRRFIIAHLIFKNEIIEVSTFRAKNNHLKKNNLYYKKIKTKKGILLSDNTFGKIEEDA 132
Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRD TINALY + DY+GG+ D++ + I+ IG+A R ED +R+LR RF
Sbjct: 133 YRRDITINALYYSIKDFGIRDYIGGIKDIKLKKIRLIGNAETRYREDPVRMLRVIRFSVQ 192
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
ID IK LK + S R+++E KL + + + +
Sbjct: 193 LNMH-IDKKTEKPIIKLSNLLKEIPSARLFNESIKLFCFGYGYLTYIRLRKYSLIYPLLP 251
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ L Q + + + S+ + + +
Sbjct: 252 FLFN-QLSQKNTFFLKKITINCLKKIDKKGKNKKISCPSFLFASLLWYLLIEKTQILSIK 310
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ +KK G I + + ++ + I ++++
Sbjct: 311 KKIKFSKAFLISINYILKKNSISIGIPKNILLIIKKIWKLQKDIEKRKKNTIKKIINHNN 370
Query: 357 HWKKPLF 363
+
Sbjct: 371 FIQAIEL 377
>gi|94986682|ref|YP_594615.1| polyA polymerase family protein [Lawsonia intracellularis
PHE/MN1-00]
gi|94730931|emb|CAJ54294.1| polyA polymerase family protein [Lawsonia intracellularis
PHE/MN1-00]
Length = 557
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 74/405 (18%), Positives = 138/405 (34%), Gaps = 42/405 (10%)
Query: 37 RDSLMN----LSVQDIDIATTILPDRVMRIFSKTRYKVIP-TSISYGTIKIICR-----K 86
RD L+N + DIDI +K V+ T + T + +
Sbjct: 154 RDILLNNLSIVEKTDIDIVVEGESLSFAEALAKKLKGVVGYTHNNLMTANVRYPFTSEKE 213
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV----IDYVGGL 142
DI T R + +V + D RRD TINA+ K ID+ G
Sbjct: 214 CSIDIATARLEYYAMPGALPLVEPTSIEQDLFRRDITINAMALQLNQKYFGRLIDHFHGQ 273
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-GEKNIDSDGLVASIKAKKGLKILS 201
++N++I I +ED RI+R RF Y + ++ + ++ +
Sbjct: 274 KAIQNKSIDVIH--SLSFIEDPTRIIRAIRFEQRYQFRISQQTEKYMHYALKCNVIEKIF 331
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS------------LDQLSQV 249
+R+ E + + P I+ M G+ I S L +
Sbjct: 332 GQRLLHEFEMIFKENKPDACIIRMDELGVLTAIDKRFSLTSKQKTLFYNISNILQWYHSL 391
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-------FNCN 302
E + I L +S + ++L S ++ +S C
Sbjct: 392 NLTENQPDIMIIYLTAMCSSLSQEQIIALLQKIGVESAYQKKIALTLSMAQDMDSTLCCL 451
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
++K + + K+ + L A Y++ + + I
Sbjct: 452 LHEKKIEKEGPVSTIFTLLSKLTLEVLLFLQAFSYSSSVTYFISQYISLWRFI------K 505
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+TG+D+ K G+ PG + IL ++ ++ + +++L +L
Sbjct: 506 PYITGNDLKKLGLVPGPQYKVILEDVLKQKLDGNVHTKEDELDYL 550
>gi|152995078|ref|YP_001339913.1| polynucleotide adenylyltransferase region [Marinomonas sp. MWYL1]
gi|150836002|gb|ABR69978.1| Polynucleotide adenylyltransferase region [Marinomonas sp. MWYL1]
Length = 365
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 70/379 (18%), Positives = 132/379 (34%), Gaps = 33/379 (8%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
+ +VGGAVRD+L+ L V D D T P+++ + + K P +
Sbjct: 3 NSYQVYLVGGAVRDALLELPVIDHDWVVTGATPEQLEKKGFQQVGKQFPVF--------L 54
Query: 84 CRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV 139
+ R + G + D RRD TINA+ DQ G +ID
Sbjct: 55 HPISKEEYALARKEKKQGEGYTGFICDFSPEISLEEDLERRDLTINAIAQDQNGTLIDPF 114
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199
G DL +R + + + +ED LR+LR RF A + S+ +
Sbjct: 115 NGQQDLLDRVFRHV---SNAFVEDPLRVLRVARFAARFHHFGFTIAPETMSLMREISSSG 171
Query: 200 L----SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
S+ERIW E+ K L ++ + + ++F + L+ ++ +
Sbjct: 172 ELSALSAERIWKELEKALNTRHANVFFSVLKDANALDKLFPEFIWEDSQMLTDILNQVGL 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++L ++ + + + + + SF + E
Sbjct: 232 TPAQRWAILCKNTPLTEL--TQLHQRIRSPNQFKILAEQTRSFLENQHIPMDSTTWENWL 289
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375
+ K L I + N +D + ++ + ++K G
Sbjct: 290 ISVNAIKKPQPFILLIAILSRLTNSKVEDWQKLRDTIA----------VINAASLIKQGF 339
Query: 376 PPGKKVGNILVHCKQEWIN 394
G ++G L + E ++
Sbjct: 340 -SGAELGQALKKVRTEALD 357
>gi|311269192|ref|XP_003132382.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like [Sus
scrofa]
Length = 208
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYG 78
L K + I GGAVRD L + QD+D ATT P ++ +F ++I +G
Sbjct: 4 ELFVKENHELRIAGGAVRDLLSGVKPQDVDFATTATPVQMKELFQSVGIRMINNKGEKHG 63
Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138
TI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++
Sbjct: 64 TITARLHEENFEITTLRVDVATDGRHAEVEFTTDWQKDAERRDLTINSMFLVSLWMEARC 123
Query: 139 V 139
Sbjct: 124 F 124
>gi|146313095|ref|YP_001178169.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Enterobacter sp. 638]
gi|167006457|sp|A4WEI8|CCA_ENT38 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|145319971|gb|ABP62118.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Enterobacter sp. 638]
Length = 413
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 75/344 (21%), Positives = 128/344 (37%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P+ ++ + + P + K
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPEEMLNAGYQQVGRDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINAL D +G +ID GG
Sbjct: 54 TREEYALARTERKAGLGYTGFTCYAAPDVTLEQDLLRRDLTINALAQDDEGHIIDAYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + ++ A L+
Sbjct: 114 RDLQNRLLRHV---SPAFSEDPLRVLRVARFAARYAHLSFRIADETLALMTAMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G K +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALKVLFPEIDALFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S + ++ + F + + + I +
Sbjct: 231 HTLMTLSMAAMLSPEVDVRFATLCHDLGKGLTPKEFW-PRHHGHGPAGVKLVEGICQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +AKL + I+++ +I W+KP
Sbjct: 290 VPNDIRDLAKLVAEFHDLIHTFPILKPATIVKLFDNIDAWRKPQ 333
>gi|229155201|ref|ZP_04283313.1| CCA-adding enzyme [Bacillus cereus ATCC 4342]
gi|228628328|gb|EEK85043.1| CCA-adding enzyme [Bacillus cereus ATCC 4342]
Length = 347
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 67/345 (19%), Positives = 143/345 (41%), Gaps = 11/345 (3%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 7 RHVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 66
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++GK++D G ++ R I +G+A R ED LR++R RF + G ++++
Sbjct: 67 IAMTEEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKT 125
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 126 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSEERL 183
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + F + ++ S+ KFS + + +K
Sbjct: 184 LKATQYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKDIVAVLLTIRKRKEK 243
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
L Y G + +++ A+ + H + + + + +T
Sbjct: 244 DWDTV----LLYKTGIHIAEMAERVYEAM-IESYDHTSVNRVQTLFQALPIKSRQEMNVT 298
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G+D++ + PG V ++ + + + +E + L++
Sbjct: 299 GNDLLNWASKKPGPWVAEMIQKIEAAIVQGNVVNEKECIREWLQE 343
>gi|288550419|ref|ZP_05970346.2| multifunctional CCA protein [Enterobacter cancerogenus ATCC 35316]
gi|288315128|gb|EFC54066.1| multifunctional CCA protein [Enterobacter cancerogenus ATCC 35316]
Length = 415
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 83/416 (19%), Positives = 152/416 (36%), Gaps = 40/416 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
KS +VGGAVRD+L+ L V+D D P+ ++ + + P + K
Sbjct: 4 KSYLVGGAVRDALLGLPVKDKDWVVVGATPEEMLDAGYQQVGRDFPVF--------LHPK 55
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D LRRD T+NAL D+ G++ID GG
Sbjct: 56 SREEYALARTERKSGAGYTGFTCYAAPDVTLEQDLLRRDLTVNALAQDEHGQIIDVYGGQ 115
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
NDLR+R ++ + ED LR+LR RF A Y + + ++ L
Sbjct: 116 NDLRDRLLRHV---SPAFSEDPLRVLRVARFAARYAHLSFRIAEETLALMTAMTEAGELA 172
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G K +F ++ + E
Sbjct: 173 HLTPERVWKETENALTTRNPQVFFQVLRDCGALKVLFPEIDALFGVPAPAKWHPEIDTGV 232
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S + ++ + + + + + + E +
Sbjct: 233 HTLMTLSMAAMLSPEVDVRFSTLCHDL--GKGLTPKALWPRHHGHGPAGVKLVEGLCQRL 290
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ D +AKL + I+++ +I W+KP + G
Sbjct: 291 RVPNDIRDLAKLVAEFHDLIHTFPILKPATIVKLFDNIDAWRKPQRVEQIALTSEADVRG 350
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQLS--QEDLHHLLRKLIASSQ 416
P G+ + K +E + + F +E+L + +A+ +
Sbjct: 351 RTGFEASDYPQGRLLREAWNVAKAVPTKEVVEAGFTGPAIREELTKRRIEAVAAWK 406
>gi|124024238|ref|YP_001018545.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. MIT 9303]
gi|123964524|gb|ABM79280.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. MIT 9303]
Length = 415
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 65/399 (16%), Positives = 133/399 (33%), Gaps = 40/399 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQ--------DIDIATTILPDRVMRIFSKTRYK----VIPTSI 75
+ +VGGAVRD L++ V D+D+ + + +
Sbjct: 31 RLALVGGAVRDGLLHR-VHFDPWRGLPDLDLVVEGSAVVLAKALRSHLGPEQLPQLRVHG 89
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
+YGT++++ D+ T R + V + D RRDFT+NA+ + G
Sbjct: 90 AYGTVELVVDGVLLDLATARQETYASPGQNPQVTEGHLEEDLARRDFTVNAMALELPGMT 149
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-----------NIDS 184
+ + + + + +D R++R R+ A G + + S
Sbjct: 150 LLDPHDGWAALAMR-QLVFLHSNSVADDPTRVVRGARYAARLGFELAPEALAQVRSTLQS 208
Query: 185 DGLVASI-KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
+A K S R+ E+ LLE + A+ H+ + G +Q
Sbjct: 209 WPWAWRPGEAPKLAPPALSTRLRMELELLLEREPWQKAVAHLQDWGALVLFDEGLQA--D 266
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIV--LISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+ + E + + L ++ ++ + + ++ L++
Sbjct: 267 QNWHRRMRWAWRLELPLLTALVAGAADPLAMAERLQLPQLQQRLLAEAAELQILLASLEV 326
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ T S + G + L + L + +L W++
Sbjct: 327 AESLSTWSPARWCETLEGSGWQPEAVALCVCLGV----------PMWRPLLRWWGRWRQV 376
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400
P++ ++ G PG +G L + E I+ L
Sbjct: 377 KSPVSAQALIDQGWRPGPALGAELKRLRLELIDQQVALR 415
>gi|110806943|ref|YP_690463.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Shigella
flexneri 5 str. 8401]
gi|122957198|sp|Q0T0K7|CCA_SHIF8 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|110616491|gb|ABF05158.1| tRNA nucleotidyl transferase [Shigella flexneri 5 str. 8401]
Length = 412
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 69/345 (20%), Positives = 126/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ LSV+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A+L + + I+++ I W+KP
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQ 333
>gi|320450640|ref|YP_004202736.1| tRNA nucleotidyltransferase [Thermus scotoductus SA-01]
gi|320150809|gb|ADW22187.1| tRNA nucleotidyltransferase [Thermus scotoductus SA-01]
Length = 828
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 74/409 (18%), Positives = 136/409 (33%), Gaps = 37/409 (9%)
Query: 13 SDLINILSLLNKGEDK-SCIVGGAVRDSLMNLSVQDIDIATT--ILPDRVMRIFSKTRYK 69
++ L + + +VGGAVRD+L++ S D+D+ + V R +
Sbjct: 443 EGARRVVLALREAFPQGIYLVGGAVRDALLDRSGPDLDLVLEPGVRVGEVARFLVERFGG 502
Query: 70 VIPTSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
++GT ++ + D+ R ++ V D RRD+T+NA+
Sbjct: 503 SFGLHYAFGTARVHVSFGLTVDLAESREEVYPYPGALPQVRPAPIAKDLERRDYTVNAMA 562
Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+++D GGL DLRNR ++ + +ED RI+R R A
Sbjct: 563 LSLATLELLDPYGGLEDLRNRLLRPLHP--LSFVEDPSRIVRGARLAARLAF-------- 612
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
R E K L + + E+FL ++E + +
Sbjct: 613 ----------------RFSEEALKALPPALLPEVLKGASKSRLRDELFLTLEEDTFLEAL 656
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
++E L + R L+ + +
Sbjct: 657 SLLEELGALGPLYGLKLPPRDPFVRLRWGPLEDEGFPPGRARVEARLLLLLYFQENPLEK 716
Query: 308 LSIPEIKKLFYLYGDKVMI--AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ K ++ + AL L + + ++ L
Sbjct: 717 ALALGLPKRLQEALALLLKGSWEEVDKEALGKEPLRRVFLALFPEKEGWLTEKRRVLM-- 774
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
G D+++ G+ PG +VG IL + + +E+L L R+LI
Sbjct: 775 -GRDLLQLGLKPGPRVGEILRQVAEARARGEVRTFEEEL-ALARRLIGD 821
>gi|39997282|ref|NP_953233.1| polyA polymerase family protein [Geobacter sulfurreducens PCA]
gi|39984172|gb|AAR35560.1| polyA polymerase family protein [Geobacter sulfurreducens PCA]
gi|307634982|gb|ADI84942.2| cytidine-specific tRNA nucleotidyltransferase [Geobacter
sulfurreducens KN400]
Length = 430
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 77/428 (17%), Positives = 137/428 (32%), Gaps = 40/428 (9%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV-MRIFSKTR 67
+ I SL G + VGG VRD+L+ DIDI + + + ++
Sbjct: 8 FISAPLPSLIASLARHGGFGAWFVGGCVRDALLARPSNDIDIVVGPGGEDLPRAVAARIG 67
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
P G +++ + + AD RDFTINAL
Sbjct: 68 GSFFPLDEERGHARVVLKGEGASCDFAPLQ------------GGTIAADLALRDFTINAL 115
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ G + + + D LRI+R +RF AH I + L
Sbjct: 116 AVSCGSDDLLDPLGGAADLAQRVIRA-CSAGAFAADPLRIVRAYRFAAHLDF-EIHAATL 173
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL------DVQEI 241
L ++ ERI E+ ++L+ + + ++ M G+ IF D
Sbjct: 174 ALIPDHAPLLATVAGERIRDELFRMLDLPHAVPYVLKMSCAGVTGAIFGADDLPADTAAG 233
Query: 242 SLDQLSQVIEAEQVFEWKIDSL---LRFIVL--ISWQDKKSILSMAKKFSLPREIRYFLI 296
+LD++ + F + + + LR V I+ + + + +P I +
Sbjct: 234 ALDRVESLCRDLSAFGTEAEPVRARLRQEVQPGITIRALAKLAAFLNGAGIPAGIASQRL 293
Query: 297 SFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD---------TC 346
+ L A +F
Sbjct: 294 MLGKAATRLLELLCSSARLTWPAPAAAPDPHALFTLFCHREPAGCEQLILPLAEGILPED 353
Query: 347 FILQVLSDIIHWKKP---LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQE 402
+ + + P LTGDD++ G+PPG++VG + + + E
Sbjct: 354 RCRHLAAYLTRQHIPRGGRLLLTGDDIMILLGLPPGRQVGEAIELLRAAQSTGEVRTRAE 413
Query: 403 DLHHLLRK 410
+L +K
Sbjct: 414 AQRYLAKK 421
>gi|293332685|ref|NP_001168693.1| hypothetical protein LOC100382483 [Zea mays]
gi|223950275|gb|ACN29221.1| unknown [Zea mays]
Length = 535
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 55/286 (19%), Positives = 100/286 (34%), Gaps = 17/286 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ N+L L +VGG VRD +M + +D DI TT +V F +
Sbjct: 87 PEAWNVLHRLRSRGYDVYLVGGCVRDLIMKKTPKDFDIITTADLRQVKDTF---LGSAVI 143
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--------FTRDWKADSLRRDFTI 124
+ + ++++ + + RRDFTI
Sbjct: 144 VGRRFPICHVHENNSIVEVSSFNTCARGSSGSQIYNSKSQNCSKNDFVRWKNCQRRDFTI 203
Query: 125 NALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
N L K+ DY+GG+ D++ ++ + A ED RILR R A G +
Sbjct: 204 NGLMFNPYSEKIYDYLGGIEDIKKAKVRTVIPAGTSFQEDCARILRAIRIAARLGF-SFP 262
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-DVQEIS 242
+ + L RI E+N +L + ++ ++ G+ + + S
Sbjct: 263 KETAYYVRTLACSVARLDKARILMEMNYMLAYGSAEASLRLLWRFGLLEHLLPFQAAYFS 322
Query: 243 LDQLSQVIEAEQ---VFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + + V K+D+ L S+L+ +
Sbjct: 323 STRFKRKDKGTNMLLVLFSKLDNFLAPNRPCHNSLWISLLAFHEAL 368
>gi|42571667|ref|NP_973924.1| polynucleotide adenylyltransferase family protein [Arabidopsis
thaliana]
gi|194272240|gb|ACF37205.1| At1g28090 [Arabidopsis thaliana]
gi|222424128|dbj|BAH20023.1| AT1G28090 [Arabidopsis thaliana]
gi|332192790|gb|AEE30911.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis
thaliana]
Length = 505
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 14/228 (6%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+L+ L K + +VGG VRD +++ +D D+ TT V ++F + +
Sbjct: 68 VLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAELKEVRKVFPGCQI----VGRRF 123
Query: 78 GTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDW--KADSLRRDFTINALYA 129
+ ++++ + R RD+ + L+RDFT+N L
Sbjct: 124 PICHVYVDDIIIEVSSFSTSARTGKAPNKSFRRPAGCDERDYIRWKNCLQRDFTVNGLMF 183
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D V DY+GG+ DLRN ++ + A+ +ED RILR R A G +
Sbjct: 184 DPSENVVYDYIGGVEDLRNSKVRTVSAANLSFVEDTARILRAIRIAARLGFSLTKDVAIS 243
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ L L RI EIN +L + ++ ++ G+ + +
Sbjct: 244 VKELSSSLL-RLDPSRIRMEINYMLAYGSAEASLRLLWRFGLMEILLP 290
>gi|224084064|ref|XP_002307206.1| predicted protein [Populus trichocarpa]
gi|222856655|gb|EEE94202.1| predicted protein [Populus trichocarpa]
Length = 458
Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats.
Identities = 56/244 (22%), Positives = 100/244 (40%), Gaps = 23/244 (9%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
I W +L LL G ++ +VGG VRD L+N +D D+ TT ++ + F
Sbjct: 21 IPDAPW-------TVLKLLRVGGFEAYLVGGCVRDLLLNRVPKDFDVITTANLQQIKKKF 73
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD----------GRYAKVVFTRDW 113
+ + + + ++++ + R +
Sbjct: 74 HRAHI----VGRRFPICIVHVKGSVIEVSSFETSAQQCQEKEKVLLSQMRRSCDEKDFLL 129
Query: 114 KADSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
+S++RDFTIN+L+ D ++ DY G+ D+R+ ++ + A ED RILR R
Sbjct: 130 WKNSMQRDFTINSLFFDPFMNRIYDYANGMEDVRSLKLQTLIPARLSFQEDCARILRGIR 189
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
G +I D A K + +K L+ +RI E+N +L + I+ + + K
Sbjct: 190 IAGRLG-LSISKDTETAICKLQSSVKSLNKDRIKMELNYMLSYGAAESTILLLQRFHLLK 248
Query: 233 EIFL 236
Sbjct: 249 IFLP 252
>gi|157148617|ref|YP_001455936.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Citrobacter koseri ATCC BAA-895]
gi|166233851|sp|A8APT7|CCA_CITK8 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|157085822|gb|ABV15500.1| hypothetical protein CKO_04444 [Citrobacter koseri ATCC BAA-895]
Length = 413
Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats.
Identities = 72/400 (18%), Positives = 133/400 (33%), Gaps = 41/400 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D RRD TINAL D G ++D G
Sbjct: 54 TREEYALARTERKSGSGYTGFTCYAAPDVTLEEDLQRRDLTINALAQDDDGHIVDPYQGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL NR ++ + ED LR+LR RF A Y + ++
Sbjct: 114 RDLDNRLLRHV---SPAFSEDPLRVLRVARFAARYAHLSFRIADETLALMRDMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F +V + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEVDALFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPNVDVRFATLCHDL--GKGLTPKALWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ + +AKL + I+++ I W+KP + G
Sbjct: 289 RVPNEIRDLAKLVAEFHDLIHTFPILQPKTIVKLFDSIDAWRKPQRVEQIALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
P G+ ++ W+ + ++E +
Sbjct: 349 RTGFEASDYPQGRW-------LREAWLVAQAVPTKEVVEA 381
>gi|270667887|ref|ZP_06222476.1| poly(A) polymerase [Haemophilus influenzae HK1212]
gi|270316774|gb|EFA28529.1| poly(A) polymerase [Haemophilus influenzae HK1212]
Length = 312
Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 18/223 (8%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 7 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 63
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D++R
Sbjct: 64 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 123
Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
RDFT+NALY + Q + + + D R H+G
Sbjct: 124 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGHEGGYVNDP----RDPGGETHWGI 179
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222
+ + + + + + + ++
Sbjct: 180 TKRTALANGYQGNMRVMTRDQAFKIYYCAFWLRYQCDKMPESV 222
>gi|324115361|gb|EGC09325.1| poly A polymerase head domain-containing protein [Escherichia
fergusonii B253]
gi|325498613|gb|EGC96472.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia fergusonii ECD227]
Length = 412
Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats.
Identities = 71/345 (20%), Positives = 129/345 (37%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ LSV+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDDGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y + + + L+
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP +++ G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLHDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +AKL + + I+++ I W+KP
Sbjct: 289 RVPNEIRDLAKLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQ 333
>gi|94266549|ref|ZP_01290235.1| Poly(A) polymerase, PcnB [delta proteobacterium MLMS-1]
gi|93452824|gb|EAT03350.1| Poly(A) polymerase, PcnB [delta proteobacterium MLMS-1]
Length = 460
Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats.
Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 13/233 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + + +L L + +VGG VRD L+ S +D DI+T+ P + +IF +R
Sbjct: 26 DREALKVLHRLRDEGHTAYLVGGGVRDLLLGKSPKDFDISTSAKPGELRKIFRNSRI--- 82
Query: 72 PTSISYGTIKIICR-KKYFDITTLRSD--LITDGRY----AKVVFTRDWKADSLRRDFTI 124
+ +++ K +++T R DG A+ + D+ RRD TI
Sbjct: 83 -IGRRFRLVQVFFPGGKIIEVSTFRCRSEFELDGSEVETLAQDNTFGNPAEDAFRRDLTI 141
Query: 125 NALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
NAL+ + + VIDY GG+ DLRNR ++ +GD R+L D +R+LR R A G I+
Sbjct: 142 NALFYEIETFTVIDYTGGVEDLRNRLVRLVGDPDRRLLRDPVRMLRAIRHAARAGF-AIE 200
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
A + L + R+ E+ K L A + GIF E+F
Sbjct: 201 EQTWAAICRHVDKLALCPDSRLRDELFKDLRAGASRHWAELALTSGIFFELFP 253
>gi|326794305|ref|YP_004312125.1| tRNA cytidylyltransferase [Marinomonas mediterranea MMB-1]
gi|326545069|gb|ADZ90289.1| tRNA cytidylyltransferase [Marinomonas mediterranea MMB-1]
Length = 371
Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats.
Identities = 70/379 (18%), Positives = 134/379 (35%), Gaps = 31/379 (8%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
K +VGGAVRD+L+ L V D D P+ ++ + K P +
Sbjct: 2 GKKVYLVGGAVRDALLGLPVYDKDWVVVGSTPEEMVSEGYQAVGKQFPVF--------LH 53
Query: 85 RKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140
K + R + G + D RRD TINA+ D G++ D
Sbjct: 54 PKTKEEYALARKERKSGQGYTGFICDFAPDISLEEDLERRDLTINAIAKDNNGRLYDPFH 113
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200
G D+ NR + + +ED LR+LR RF A + + +
Sbjct: 114 GTQDIENRVFRHV---SDAFVEDPLRVLRVARFAARFQDFEFRIANETLRLMKDISASGE 170
Query: 201 ----SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
+ ER+W E K L + L + IF + + Q + +
Sbjct: 171 LTALTPERVWKETEKALGYPHFLTYFKILNQVDATTSIFPVLTTH-ITQPQNLGKISSDK 229
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
E S+ R+ +L S + + ++ +P E ++ + + N+ + +
Sbjct: 230 ELT--SVERWALLCSGLEIHQLQALNANLKVPNEFKWLSETLCDFLKNKTLPLSGDNWEA 287
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376
+ + + L + + + + +L+ ++ +++ G
Sbjct: 288 WLTQISALKKPERYYQLTYLISLVVDVHSKHWVSLLAQAQS-------ISPKELMSQGYT 340
Query: 377 PGKKVGNILVHCKQEWINS 395
G ++GN + K + I+S
Sbjct: 341 -GAELGNAIKKAKADAIDS 358
>gi|94271989|ref|ZP_01292045.1| Poly(A) polymerase, PcnB [delta proteobacterium MLMS-1]
gi|93450282|gb|EAT01541.1| Poly(A) polymerase, PcnB [delta proteobacterium MLMS-1]
Length = 460
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 13/233 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D + + +L L + +VGG VRD L+ S +D DI+T+ P + +IF +R
Sbjct: 26 DREALKVLHRLRDEGHTAYLVGGGVRDLLLGKSPKDFDISTSAKPGELRKIFRNSRI--- 82
Query: 72 PTSISYGTIKIICR-KKYFDITTLRSD--LITDGRY----AKVVFTRDWKADSLRRDFTI 124
+ +++ K +++T R DG A+ + D+ RRD TI
Sbjct: 83 -IGRRFRLVQVFFPGGKIIEVSTFRCRSEFELDGSEVETLAQDNTFGNPAEDAFRRDLTI 141
Query: 125 NALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
NAL+ + + VIDY GG+ DLRNR ++ +GD R+L D +R+LR R A G I+
Sbjct: 142 NALFYEIETFTVIDYTGGVEDLRNRLVRLVGDPDRRLLRDPVRMLRAIRHAARAGF-AIE 200
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
A + L + R+ E+ K L A + GIF E+F
Sbjct: 201 EQTWAAICRHVDKLALCPDSRLRDELFKDLRAGASRHWAELALTSGIFFELFP 253
>gi|283836415|ref|ZP_06356156.1| multifunctional CCA protein [Citrobacter youngae ATCC 29220]
gi|291067789|gb|EFE05898.1| multifunctional CCA protein [Citrobacter youngae ATCC 29220]
Length = 413
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 73/387 (18%), Positives = 132/387 (34%), Gaps = 41/387 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALIGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPR 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D RRD TINA+ D G++ID G
Sbjct: 54 TREEYALARTERKSGSGYTGFTCYAAPDVTLEDDLQRRDLTINAMARDDDGEIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
+DL+NR ++ + ED LR+LR RF A Y ++
Sbjct: 114 SDLQNRLLRHV---SPAFSEDPLRVLRVARFAARYAHLGFRIADETMTLMRDMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+SER+W E L +NP + + G + +F +V + E
Sbjct: 171 HLTSERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEVDALFGVPAPAQWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S + ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPEVDVRFATLCHDL--GKALTPKALWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ D +AKL + I+++ I W+KP + G
Sbjct: 289 RVPNDIRDLAKLVAEFHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCKQEWI 393
P G+ ++ W+
Sbjct: 349 RTGFEAADYPQGRL-------LREAWL 368
>gi|164688262|ref|ZP_02212290.1| hypothetical protein CLOBAR_01907 [Clostridium bartlettii DSM
16795]
gi|164602675|gb|EDQ96140.1| hypothetical protein CLOBAR_01907 [Clostridium bartlettii DSM
16795]
Length = 450
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 67/442 (15%), Positives = 139/442 (31%), Gaps = 56/442 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPT 73
I + K ++ VGG VRD ++ + ++D+DI I + +++I V
Sbjct: 9 AKVIAQEVLKKGGRTFFVGGCVRDEILGIDIKDVDIEVHNIEVEDLVKILESIGD-VQKI 67
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYA 129
+G + DI R + + +K +LRRDFTIN+L
Sbjct: 68 GSFFGV--FNLKGYDIDIAMPRKEKSNGRGHKDFEIFVDPFIGYKEAALRRDFTINSLMK 125
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D I + N I ED LR+ R +F + + + + L++
Sbjct: 126 DVLSGEIIDSFNGIEDLNNKIIR-HVNDESFCEDPLRVFRGSQFASRFDFEIYEKTKLLS 184
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
S + LL+A P + + F +V+++ S++
Sbjct: 185 ST--MDVSSLAFERVFDELKKALLKANKPSIFFKSLKDMNQLSYWFKEVEDLIGINQSEI 242
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR-------------------- 289
E +L + + K + M
Sbjct: 243 HHPEGDVFTHTMMVLDEAAKLRDKAKNKLAFMLAALCHDFGKTVTTEIKKGKLTAYGHEV 302
Query: 290 -----------------EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI--AKLK 330
++ ++ + + KK D + +
Sbjct: 303 ESVTLAKGLLDRLTNKISLKKETLNLIKLHMKPNQMYNSAKKKSMMKLWDDAIHPSDLIL 362
Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP---LTGDDVVKYGIPPGKKVGNILVH 387
+ A +D I +L+ ++ K L + G D+++ G+ PG +
Sbjct: 363 LAKADALGRGVKKDYSEIESILNKSLNEYKELMLEPEVVGKDLIELGLKPGVLFSEYIKL 422
Query: 388 CKQEWINSSFQLSQEDLHHLLR 409
+ ++ LS++++ ++
Sbjct: 423 GHKLHLSG---LSKDEILKHIK 441
>gi|12322982|gb|AAG51472.1|AC069471_3 hypothetical protein [Arabidopsis thaliana]
Length = 462
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 8/222 (3%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+L+ L K + +VGG VRD +++ +D D+ TT V ++F + +
Sbjct: 68 VLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAELKEVRKVFPGCQI----VGRRF 123
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW--KADSLRRDFTINALYADQQGK- 134
+ +++ R RD+ + L+RDFT+N L D
Sbjct: 124 PICHVYVDDIIIEVSRTGKAPNKSFRRPAGCDERDYIRWKNCLQRDFTVNGLMFDPSENV 183
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
V DY+GG+ DLRN ++ + A+ +ED RILR R A G + +
Sbjct: 184 VYDYIGGVEDLRNSKVRTVSAANLSFVEDTARILRAIRIAARLGFSLTKDVAISVKELSS 243
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
L L RI EIN +L + ++ ++ G+ + +
Sbjct: 244 SLL-RLDPSRIRMEINYMLAYGSAEASLRLLWRFGLMEILLP 284
>gi|282895920|ref|ZP_06303960.1| Polynucleotide adenylyltransferase region protein [Raphidiopsis
brookii D9]
gi|281199165|gb|EFA74034.1| Polynucleotide adenylyltransferase region protein [Raphidiopsis
brookii D9]
Length = 423
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 76/415 (18%), Positives = 140/415 (33%), Gaps = 47/415 (11%)
Query: 29 SCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMR-IFSKTRYKVIPTSISYGTIKIICR 85
+ +VGGAVRD ++ D+D +V R I + +++
Sbjct: 25 AYMVGGAVRDGILGRSQDYLDLDFIIPDNAVKVARAIAQHYGAGFVLLDSKRNIARVVFP 84
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ D D RRDFTINA+ + + + G
Sbjct: 85 QGTVDFA--------------QQDGESLLTDLHRRDFTINAIAYNPYTQELMDPLGGCKD 130
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+ + + + +D LR++R +R A I+ + + L ++SERI
Sbjct: 131 IESGLLRMISPQN-LQDDPLRLMRAYRQAAQLNFV-IEPHTQLTIRRLATNLCQVASERI 188
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL-- 263
+E+ LL+ + + G+ + F+ S+D+L V A Q L
Sbjct: 189 RTEVGYLLQNAVGTFWLKTAWEDGLLGQFFIYATRESVDKLIAVDPAIQAIGENWSQLGE 248
Query: 264 ----------------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+ + + + + + R +I+ K
Sbjct: 249 KLEKPIRDSMKTRWLDIAKLGCLVNPAPEIAERELGEMTYSRVEIRSVITALRLFPQMKQ 308
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW--------K 359
S +++ +Y + + ++ I LAL + + L++ ++
Sbjct: 309 ASSMSLREQYYWFREVGVVFSSTIVLALVQDIFNTKFQKHSLELYRPLVQRYLNPDDLVA 368
Query: 360 KPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
P +TG +V+ IPP VG+IL SQ L L RKLI
Sbjct: 369 HPSPLVTGKEVIVALNIPPSPLVGDILQEIAIAQAEGKVNNSQGAL-ALARKLIE 422
>gi|213622159|ref|ZP_03374942.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Typhi str. E98-2068]
Length = 335
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 68/344 (19%), Positives = 122/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y +AD RRD TINAL D G++ID G
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL R ++ + ED LR+LR RF A Y + ++ +
Sbjct: 114 RDLEARLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLTLMREMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S Q ++ + + + + ++ +
Sbjct: 231 HTLMTLSMAAMLSPQLDVRFATLCHDVGKGLTPKNLW-PRHHGHGPVGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +AKL + I+++ I W+KP
Sbjct: 290 VPNDLRDLAKLVAAYHDLIHTFPILQPKTIVKLFDAIDAWRKPQ 333
>gi|239995672|ref|ZP_04716196.1| tRNA nucleotidyltransferase [Alteromonas macleodii ATCC 27126]
Length = 392
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 70/394 (17%), Positives = 127/394 (32%), Gaps = 44/394 (11%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+L+N V + D + P+ ++ + + K
Sbjct: 2 QIYLVGGAVRDALLNRKVVERDYVVVGATPEEMLS------QGFTQVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D LRRD T+NA+ D G +ID GG
Sbjct: 54 TQEEYALARTERKSGKGYTGFVCDASSSVTLEEDLLRRDLTVNAIAQDNLGNLIDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL NR ++ + ED LR+ R RF Y ++
Sbjct: 114 KDLENRLLRHV---SEAFSEDPLRVFRVARFATRYAYLGFTIATETMALMQSMAQSGELS 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ---EISLDQLSQVIEAEQV 255
LS+ER+W E + L K P + + F +++ + +L+ L + E+
Sbjct: 171 TLSAERVWQETKRSLLEKTPHVFFTVLNQAHGLNDWFTELERNVDTALETLKTAVALEKA 230
Query: 256 FEWKIDSLLRFIVLISWQDKKSI------LSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ + + E + N + +S
Sbjct: 231 ENESVVKYTGSETPLPESSDSETARLITRFTALLTHLSEEEAKQLCSRLKVQNQVSEIVS 290
Query: 310 IPEIKKLFYLYGDKVMIAKLKIF--------------LALHYNNLTHQDTCFILQVLSDI 355
+ K F L L +F L + H + I
Sbjct: 291 LACKFKGFLLNAQNSPADLLALFNSCDAWRREERFTLLLSAFAPYAHNKGIDWQRQRKRI 350
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
+ + D++ G+ G ++ + L K
Sbjct: 351 ENALSAANQVNVQDIIATGVK-GPEIKDALNQAK 383
>gi|332999816|gb|EGK19400.1| poly A polymerase head domain protein [Shigella flexneri K-272]
gi|333015684|gb|EGK35023.1| poly A polymerase head domain protein [Shigella flexneri K-227]
Length = 412
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 68/345 (19%), Positives = 125/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLLVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINAL D G++ID GL
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+NR ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 GDLQNRLLRHV---SPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S Q ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPQVDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A+L + + I+++ I W+KP
Sbjct: 289 RVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQ 333
>gi|145324048|ref|NP_001077613.1| polynucleotide adenylyltransferase family protein [Arabidopsis
thaliana]
gi|332192791|gb|AEE30912.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis
thaliana]
Length = 478
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 14/228 (6%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+L+ L K + +VGG VRD +++ +D D+ TT V ++F + +
Sbjct: 41 VLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAELKEVRKVFPGCQI----VGRRF 96
Query: 78 GTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDW--KADSLRRDFTINALYA 129
+ ++++ + R RD+ + L+RDFT+N L
Sbjct: 97 PICHVYVDDIIIEVSSFSTSARTGKAPNKSFRRPAGCDERDYIRWKNCLQRDFTVNGLMF 156
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D V DY+GG+ DLRN ++ + A+ +ED RILR R A G +
Sbjct: 157 DPSENVVYDYIGGVEDLRNSKVRTVSAANLSFVEDTARILRAIRIAARLGFSLTKDVAIS 216
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ L L RI EIN +L + ++ ++ G+ + +
Sbjct: 217 VKELSSSLL-RLDPSRIRMEINYMLAYGSAEASLRLLWRFGLMEILLP 263
>gi|260436050|ref|ZP_05790020.1| tRNA nucleotidyltransferase/poly [Synechococcus sp. WH 8109]
gi|260413924|gb|EEX07220.1| tRNA nucleotidyltransferase/poly [Synechococcus sp. WH 8109]
Length = 402
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 68/394 (17%), Positives = 130/394 (32%), Gaps = 40/394 (10%)
Query: 21 LLNKGED-KSCIVGGAVRDSLM----NLS---VQDIDIATTILP----DRVMRIFSKTRY 68
+ +VGG VRD L+ + V D+D D +M+ R
Sbjct: 17 AAQDAGVTRLALVGGVVRDLLLHHLHGVPWAGVPDLDWVVEGDALALTDVLMQRCGSQRV 76
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ +YGT+ + D+ + R ++ V + D LRRDFTINA+
Sbjct: 77 TDVQHYGAYGTVALRFDGIPVDLASARREIYPAPAQNPKVEPGTLEQDLLRRDFTINAMA 136
Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D +++D+ G L ++ + + D R +D R++R R+ A G +
Sbjct: 137 IDLMAEQLVDFHSGQRGLTDKQLTLLHDHSIR--DDPTRVIRAARYAARLGFTLDEKTQD 194
Query: 188 VASIKAKKGLKILSS------------ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ + S+ R+ E+++L + + AI + I
Sbjct: 195 QITRTIQAWPWAWSTSASATAAPPALSTRLRMELHRLFQHEPWAQAIACLQEWQALSLID 254
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+Q L L + + Q E + L + + + ++ R++
Sbjct: 255 PSLQGDPL--LMRRLHWAQRLELPLVLALVSGTRHPLRVAQRLQLPGQEQQWLRQMLDLK 312
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
+L + L +A L + + +L
Sbjct: 313 QWLLADAPRVSSLPSVWSEALEARGAKAESVALLICLMPVQ-----------WKPLLRWW 361
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
W+K P T ++ G G +G L +
Sbjct: 362 GRWRKIKSPKTARQLLDSGWSSGPALGQELNRLR 395
>gi|113953997|ref|YP_729464.1| polyA polymerase family protein [Synechococcus sp. CC9311]
gi|113881348|gb|ABI46306.1| polyA polymerase family protein [Synechococcus sp. CC9311]
Length = 434
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 60/412 (14%), Positives = 126/412 (30%), Gaps = 39/412 (9%)
Query: 13 SDLINILSLLNKGED--KSCIVGGAVRDSLMN-------LSVQDIDIATTILPDRVMRIF 63
L+ L L + +VGGAVRD+L++ + D+D+ +
Sbjct: 31 PQLLPALQALASEVGVSRLALVGGAVRDALLHDEHCDPWRELPDLDLVMEGSASELAAAL 90
Query: 64 SKT----RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ R + + +YGT ++ D+ R D VV + + D R
Sbjct: 91 QRHYGDERVQEVRVHGAYGTAELSFDGVLLDLAGARQDHYPAPGENPVVESGSLERDLER 150
Query: 120 RDFTINALYAD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
RDFT+NA+ + + + + + +D R++R R+ A
Sbjct: 151 RDFTVNAMALELSLSGDREPLLLDPHGGQAHLERRELAFLHASSVADDPTRVIRAARYGA 210
Query: 176 HYGE-------KNIDSDGLVASIKAKKGLKILSSE-----RIWSEINKLLEAKNPLNAIV 223
G + + + G R+ E+ L E + L A+
Sbjct: 211 RLGFVLTPSSQDQLRTTLKRWPWSWRHGQSTEHVPPALGTRLRMELELLFENEPWLKALE 270
Query: 224 HMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK 283
+ G + + + + K+ +L + +
Sbjct: 271 LLQQWGALALLDPLLSSNATL----IRRLRWAMRLKVPLILALVAAATDPCSLGQRLQLP 326
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
++ + + + + + + + L +
Sbjct: 327 LRQQRLLEESMSLTNWLHSEVLPQAWVGWSAVQWTEALETRAWSPESVVLTVAMG----- 381
Query: 344 DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
+L W+K PL+ D++ GIP G +G L + + ++S
Sbjct: 382 -VPCWRPMLRWWGRWRKIRSPLSAKDLIASGIPAGPGLGLALHQARVKALDS 432
>gi|239631536|ref|ZP_04674567.1| CCA-adding enzyme [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239526001|gb|EEQ65002.1| CCA-adding enzyme [Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 325
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 75/338 (22%), Positives = 134/338 (39%), Gaps = 18/338 (5%)
Query: 81 KIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138
++ +++TT R++ R V F R D RRDFTINAL G +ID
Sbjct: 2 MVLDHGTGYEVTTFRTESRYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVRHDGTIIDL 61
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198
GL DL++ ++ +G+ H R ED LR++R RF + G I+ A K L
Sbjct: 62 FDGLKDLQHHQLRAVGNPHERFHEDALRMMRAVRFESQLGF-GIEPATKAAIADNAKLLV 120
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQLSQVIEAEQVFE 257
+S ER+ +E N+LL + + +F + E +L Q SQ+ +
Sbjct: 121 HISVERVAAEFNRLLTGIDRRAGLQDFIETRLFAYAPKMAAHETALTQFSQL------PD 174
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
++ SL + + + L+M K + E+ + + +
Sbjct: 175 TQLTSLASGWAALIFLLRTQPLAMLKAWKQSNELITLVTQTVKLLQVMPNPTAWD----L 230
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
Y G+ + ++ L D + + + + K LTG D++K G+ P
Sbjct: 231 YQAGEAAVTTASEVQKLLT----PDFDQQQLAEAYAALPIHSKKELALTGADLIKAGVRP 286
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
G +G L +Q + + + L + ++
Sbjct: 287 GPAMGKALNQIEQRVVAGALPNELKKLLPIATEMSQDR 324
>gi|297845758|ref|XP_002890760.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297336602|gb|EFH67019.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 534
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/228 (23%), Positives = 96/228 (42%), Gaps = 14/228 (6%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+L+ L K + +VGG VRD +++ +D D+ TT V ++F + + +
Sbjct: 97 VLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAELKEVRKVFPRCQI----VGRRF 152
Query: 78 GTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDW--KADSLRRDFTINALYA 129
+ ++++ + + R RD+ + L+RDFT+N L
Sbjct: 153 PICHVYVDDIIIEVSSFSTSARTGKAPSKNLRKPAGCDERDYIRWKNCLQRDFTVNGLMF 212
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D V DY+GG+ D+RN ++ + A +ED RILR R A G +
Sbjct: 213 DLSENVVYDYIGGVEDIRNSKVRTVSAAKLSFVEDTARILRAIRIAARLGFSLTKDVAIS 272
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ L L RI EIN +L + ++ ++ G+ + +
Sbjct: 273 VKELSSSLL-RLDPSRIRMEINYMLAYGSAEASLRLLWRFGLMEILLP 319
>gi|296104714|ref|YP_003614860.1| tRNA nucleotidyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295059173|gb|ADF63911.1| tRNA nucleotidyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 413
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 82/415 (19%), Positives = 151/415 (36%), Gaps = 40/415 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
KS +VGGAVRD+L+ L V+D D P+ ++ + + P + +
Sbjct: 2 KSYLVGGAVRDALLGLPVKDKDWVVVGATPEEMLNAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D LRRD TINAL D+ G+++D GG
Sbjct: 54 SREEYALARTERKSGSGYTGFTCYAAPDVTLEQDLLRRDLTINALAQDENGQIVDAYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
+DLRNR ++ + ED LR+LR RF A Y + ++
Sbjct: 114 DDLRNRLLRHV---SPAFSEDPLRVLRVARFAARYAHLSFRIADETMALMTAMTKAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G K +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALKVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S + ++ + F + + + + +
Sbjct: 231 HTLMTLSMAAMLSPEVDVRFSTLCHDLGKGLTPKEFW-PRHHGHGPAGVKLVEGLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGD 368
+ + +AKL + I+++ +I W+KP + G
Sbjct: 290 VPNEIRDLAKLVAEFHDLIHTFPILKPATIVKLFDNIDAWRKPQRVEQIAHTSEADVRGR 349
Query: 369 D-VVKYGIPPGKKVGNILVHCK----QEWINSSFQLS--QEDLHHLLRKLIASSQ 416
P G+ + K +E + + F+ +E+L R++ A S+
Sbjct: 350 TGFEACDYPQGRLLRAAWEVAKAVPTKEVVEAGFKGPEIREELTK--RRIQAVSE 402
>gi|117921514|ref|YP_870706.1| metal dependent phosphohydrolase [Shewanella sp. ANA-3]
gi|166233879|sp|A0KZT1|CCA_SHESA RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|117613846|gb|ABK49300.1| metal dependent phosphohydrolase [Shewanella sp. ANA-3]
Length = 416
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 126/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+NL ++D D P+++ ++ + K P + K
Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDFMVVGATPEQMQQLGYRQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D+ G + D G+
Sbjct: 54 TQQEYALARTERKVGLGYGGFSCYASPDVTLEQDLLRRDLTINAIAQDEAGNLYDPYHGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
D+ R ++ + ED LR+LR RF A + + + ++
Sbjct: 114 ADINARQLRHV---SAAFAEDPLRVLRVARFAARFHDLGFEIAAETMALMQHMSQTEELT 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E++K L +P + G +F +++ + + E
Sbjct: 171 ALTPERVWQEVDKSLGGPHPEVFFEVLRQCGALNILFPEIEALFGVPQPEKWHPEIDTGL 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L ++ + ++ + + + + I + +
Sbjct: 231 HTMLVLAQASSLTEEKAVRFAALVHDLGKALSPKEHW-PKHHGHGQKGLPVIKSLCERLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L + + + I+++ W+KP
Sbjct: 290 IPNEYRDLALLVSDQHQNVHQAFELRSETIIKLFDKADFWRKPE 333
>gi|116073942|ref|ZP_01471204.1| Poly A polymerase family protein [Synechococcus sp. RS9916]
gi|116069247|gb|EAU74999.1| Poly A polymerase family protein [Synechococcus sp. RS9916]
Length = 420
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 76/393 (19%), Positives = 130/393 (33%), Gaps = 28/393 (7%)
Query: 31 IVGGAVRDSLMNLSVQ--DIDIATTILP-DRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD+L+ D+D+ R+ + + +++ +
Sbjct: 44 LVGGAVRDALLGRLSSTPDLDLVVPADALGETRRLAKRYGGACVVLDEQRDMARLVVKGW 103
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD--QQGKVIDYVGGLNDL 145
D+ + AD RRD+ INA+ +++D GGL DL
Sbjct: 104 TIDLA--------------RQEGANLTADLQRRDYRINAIALRLAPTPELVDPCGGLQDL 149
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+ + A +++D LR+LR R A I +D K +K L + ERI
Sbjct: 150 NAGLLTAV--AEQNLIDDPLRLLRGIRIAAELNF-KIAADTWPLLNKHRKALPKAAPERI 206
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265
+E+ KL++A A+ + G+ S L + E + R
Sbjct: 207 QAELTKLVQAPGADQAMEQLRCSGLLSPWAPTEDAGSQADLKRPPEPLTPSAASLTQEER 266
Query: 266 FIVLISWQDKKSILSM-AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324
L + + K R L + + L
Sbjct: 267 QAALPLVRLTGLLSDHGLKTLRFSRRQIQRCGVLRRWQQMDDGLGFDSLSEERRLKLHTE 326
Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGN 383
+ L AL ++ + + + P PL G + GI PG ++G
Sbjct: 327 LGDDLP---ALILQLQPPFQEAWLERWRNPVDPLFHPQPPLDGTTLQDALGITPGPQLGQ 383
Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+L H E + L R+ +SQ
Sbjct: 384 LLQHLAVERAFGRLPNREAALTA-ARRWWMTSQ 415
>gi|46198787|ref|YP_004454.1| tRNA nucleotidyltransferase [Thermus thermophilus HB27]
gi|46196410|gb|AAS80827.1| tRNA nucleotidyltransferase [Thermus thermophilus HB27]
Length = 815
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 76/408 (18%), Positives = 137/408 (33%), Gaps = 44/408 (10%)
Query: 13 SDLINILSLLNKGEDK-SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS---KTRY 68
S ++ ++ L + + +VGGAVRD+L+ S D+D+A V R+
Sbjct: 439 SGVLRVVEALREAFPEGIYLVGGAVRDALLGRSGPDLDLAV-GPGVEVARVAQFLVDRFG 497
Query: 69 KVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
++GT ++ D+ R ++ V D RRD+++NA+
Sbjct: 498 GSYGLHYAFGTARVRLPFGLVVDLAESREEVYPYPGALPQVRRAPIARDLERRDYSVNAM 557
Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
D +D GGL DL R ++ + +ED R++R R A G + +
Sbjct: 558 AVDLGGLAFLDPYGGLRDLEARLLRPLHPLA--FVEDPTRVVRGARLAARLGFRFAEEVP 615
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + L + + S + + L A + + L
Sbjct: 616 RLLAPA---LLPEVVAGASRSRLREELLLTLEEEAFYRALALLAELGALKALYGLDLPPE 672
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + LL + L A +LP +R L + ++
Sbjct: 673 APFLRLRAEEGLSEARLLLLLFHQKDP-----LERAAWLALPGRLREGLALLLAASRGEE 727
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
G + + A + L+ + L
Sbjct: 728 VPKEA--------LGREPLRAAFLALF---------PEKEAWLKAERRV---------LM 761
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
G D++K G+ PG KVG IL + + +E+L L RKL+
Sbjct: 762 GRDLLKLGLKPGPKVGEILRRVAEARRRGEVRSFEEEL-ALARKLLGD 808
>gi|33864724|ref|NP_896283.1| polyA polymerase [Synechococcus sp. WH 8102]
gi|33632247|emb|CAE06703.1| possible polyA polymerase [Synechococcus sp. WH 8102]
Length = 403
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 65/384 (16%), Positives = 124/384 (32%), Gaps = 39/384 (10%)
Query: 28 KSCIVGGAVRDSLM----NLS---VQDIDIATTILPDRVMRIFSK----TRYKVIPTSIS 76
+ +VGG VRD L+ V D+D + + + R +
Sbjct: 25 RLALVGGVVRDLLLHQRHGRPWTGVPDLDWVVEGSAAHLADVLQERCGTERVSGVQHHGQ 84
Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135
+GT+ + D+ T R + VV AD +RRD TINA+ D G++
Sbjct: 85 FGTVALNLDGVPLDLATARQEHYPRPAENPVVQPGSLAADLVRRDLTINAMALDLMSGEL 144
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-------NIDSDGLV 188
ID GG +DL ++F+ I +D R++R R+ A G + +
Sbjct: 145 IDLHGGQSDLAAGRLQFLHP--GSISDDPTRVIRAARYGARLGIDLGSEALEQVGATVAA 202
Query: 189 ASIKAKKGLKILSSE-----RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
G ++ R+ E+ +LL+ + A+ + + + +Q
Sbjct: 203 WPWAWHVGNAPETAPPALASRLRMELERLLDHEPWPIALDLLESWQAMALVDPCLQR--D 260
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
+ ++ + Q + + L + + ++ + L + +
Sbjct: 261 PERTRRLRWGQRLGLPLMTALLAAAADPGAVARRLQIPGEQQQWLERL-PSLQGWLGSHP 319
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
S G L + L +L W+
Sbjct: 320 LPIHASPDAWTTALERGGWPPQTVALMVTL----------RPAAWRPLLRWWGRWRHIPS 369
Query: 364 PLTGDDVVKYGIPPGKKVGNILVH 387
P + ++ G PG +G L
Sbjct: 370 PQSARQLIAEGWQPGPGLGEELRR 393
>gi|269123620|ref|YP_003306197.1| Polynucleotide adenylyltransferase region [Streptobacillus
moniliformis DSM 12112]
gi|268314946|gb|ACZ01320.1| Polynucleotide adenylyltransferase region [Streptobacillus
moniliformis DSM 12112]
Length = 577
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 86/431 (19%), Positives = 156/431 (36%), Gaps = 38/431 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D L IL++LN+ + +VGGA+RD + D D+AT I + ++ I S+ I
Sbjct: 6 DERLQFILNILNEYG-EGYLVGGALRDIFLGFKPTDFDMATNIPMEELLHILSEHN--PI 62
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINALYA 129
S Y I I + +I R + F + + D RRDFT+NAL
Sbjct: 63 IISEKYQVISIQVDEYKIEIARFRKENGILDGRNPQKFKFVENIEEDLARRDFTVNALAY 122
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHH-RILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ +ID G + D+ N + IG+ R+ ED RI R + Y K
Sbjct: 123 NNNKGLIDKYGSIKDIENLELNIIGEDKALRLAEDNTRIYRALYLVSKYNFKLSCETKKA 182
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD---- 244
S +S ++K+L K ++ M + +FK ++ +LD
Sbjct: 183 ISNFKNHRKLNVSISGFGRLLDKILFNKYSYKSLKIMLDNDLFKFFIPELSVDNLDNATI 242
Query: 245 ----QLSQVIEAEQVFEWKID--SLLRFIVLISWQDKKSILSMAKK----------FSLP 288
V VFE K ++L S D L + ++
Sbjct: 243 KNTVNTYNVYCKYNVFEDKTIGYAILFLYSGKSKLDDNKFLVNSMIIAESYLKKIGLNMT 302
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT-CF 347
I + +++ ++ + LF +K + L +H+++ + +T
Sbjct: 303 DIILVKNLIYYSNIISRAINKETVKRMLFEFRNNKNVSKLLNFISFIHHHDDNYNETMKK 362
Query: 348 ILQVLSDIIHWK-------KPLFPLTGDDVVKYGIPPGKKVGN--ILVHCKQEWINSSFQ 398
L++LS I + D+ G+ ++ I + +
Sbjct: 363 TLELLSRIQSIYFEGDVVFINDLDINLVDLYNIGLDT--EISKESIRQDIYKHVNEGNLN 420
Query: 399 LSQEDLHHLLR 409
+ED+ ++
Sbjct: 421 NKKEDIIEYIK 431
>gi|255561389|ref|XP_002521705.1| poly(A) polymerase, putative [Ricinus communis]
gi|223539096|gb|EEF40692.1| poly(A) polymerase, putative [Ricinus communis]
Length = 675
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/340 (18%), Positives = 122/340 (35%), Gaps = 27/340 (7%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
I W +L +L+ ++ +VGG VRD L+N +D D+ TT +V + F
Sbjct: 71 IPPSPWL-------VLKILHNKGFEAYLVGGCVRDLLLNRIPKDFDVITTAKLKQVKKQF 123
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---------- 113
+ + ++ + ++++ + + +V+ ++
Sbjct: 124 HRCEI----VGRRFPICRVHVKGSVVEVSSFETVAQHNEGKEEVLISQKPSGCNGRDFIR 179
Query: 114 KADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
+S+ RDFTIN+L+ D I DY G+ DL ++ + A ED RILR R
Sbjct: 180 WRNSMHRDFTINSLFFDPFMNQIFDYANGMADLSFLKLRTVIPARLSFQEDCARILRGLR 239
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
G +I D A K +K L RI E+N +L + I + + +
Sbjct: 240 IAGRLG-LSISKDTESAIRKLSSSVKSLDKARIMMELNYMLSYGAAESTIYLLQRFNLLE 298
Query: 233 EIFL----DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ + + + S + +D+L+ + +L+ +
Sbjct: 299 LFLPFHAAYLSQQAGETFSLGSVMLMKLFFNLDTLVSCDRPCTSSLWVGLLAFHQALVTN 358
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ F + ++ K E + K
Sbjct: 359 PQDALVSWVFASVLYHGKWKDGVEFARENAKMQVKFAPEI 398
>gi|300718448|ref|YP_003743251.1| multifunctional tRNA nucleotidyl transferase/2\'3\'-cyclic
phosphodiesterase/2\'nucleotidase/phosphatase [Erwinia
billingiae Eb661]
gi|299064284|emb|CAX61404.1| multifunctional tRNA nucleotidyl transferase/2\'3\'-cyclic
phosphodiesterase/2\'nucleotidase/phosphatase [Erwinia
billingiae Eb661]
Length = 408
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/344 (20%), Positives = 122/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD+L+NL V+D D P+ ++ + + P + +
Sbjct: 2 KTYLVGGAVRDALLNLPVKDKDWVVVGASPEEMLSQGYEQVGRDFPVF--------LHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y V + D RRD TINA+ D+QG++ D GG
Sbjct: 54 THQEYALARTERKSGSGYTGFVCYSAPDVTLEQDLQRRDLTINAIAQDEQGRLYDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL R ++ + ED LR+LR RF A + N ++
Sbjct: 114 ADLDQRLLRHV---SAAFNEDPLRVLRVARFAARFAHLNFVVAEETQALMRWMAESGELN 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E K LE +NP + + G +F ++ + E
Sbjct: 171 TLTPERVWKETEKALETRNPQVYFQVLRDCGALAVLFPELDNLYGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S D + + + + + +
Sbjct: 231 HTLMTLAIAAQLS-PDIAVRFATLFHDVGKALTPPEKWPSHHGHGPAGVPLVAALCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + Q ++ + I W+KP
Sbjct: 290 VPNAIRDLALLVTEFHDLVHTVERQSAETLVALFDRIDAWRKPQ 333
>gi|288933518|ref|YP_003437577.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Klebsiella variicola At-22]
gi|290511423|ref|ZP_06550792.1| tRNA nucleotidyltransferase [Klebsiella sp. 1_1_55]
gi|288888247|gb|ADC56565.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Klebsiella variicola At-22]
gi|289776416|gb|EFD84415.1| tRNA nucleotidyltransferase [Klebsiella sp. 1_1_55]
Length = 413
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/344 (20%), Positives = 120/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
KS +VGGAVRD+L+ L V+D D P +++ + + P + +
Sbjct: 2 KSYLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y +AD LRRD T+NAL D G +ID GG
Sbjct: 54 SREEYALARTERKSGAGYTGFTCYAAPDVTLEADLLRRDLTVNALAQDADGTIIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
NDL ++ + ED LR+LR RF A Y ++
Sbjct: 114 NDL---RLRLLRHVSPAFSEDPLRVLRVARFAARYAHLGFRIAEETQALMHAMVEAGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + K +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQTLRDCQALKVLFPEIDALYGVPAPAKWHPEIDTGL 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ ++S ++ + + + + +I
Sbjct: 231 HTLMTVTMAAMLSPDVDVRFATLCHDLGKGLTPKALW-PRHHGHGPAGVKLVEQICARLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +AKL + L ++++ I W+KP
Sbjct: 290 VPNDIRDLAKLVAEYHDLIHTLPILQPKTLVKLFDSIDAWRKPQ 333
>gi|206580700|ref|YP_002236534.1| multifunctional CCA protein [Klebsiella pneumoniae 342]
gi|226702067|sp|B5XU35|CCA_KLEP3 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|206569758|gb|ACI11534.1| multifunctional CCA protein [Klebsiella pneumoniae 342]
Length = 413
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/345 (20%), Positives = 121/345 (35%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
KS +VGGAVRD+L+ L V+D D P +++ + + P + +
Sbjct: 2 KSYLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y +AD LRRD T+NAL D G +ID GG
Sbjct: 54 SREEYALARTERKSGAGYTGFTCYAAPDVTLEADLLRRDLTVNALAQDADGTIIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
NDL ++ + ED LR+LR RF A Y ++
Sbjct: 114 NDL---RLRLLRHVSPAFSEDPLRVLRVARFAARYAHLGFRIAEETQALMHAMVEAGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + K +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQTLRDCQALKVLFPEIDALYGVPAPAKWHPEIDTGL 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
+ ++S ++ + + + + + + E
Sbjct: 231 HTLMTVTMAAMLSPDVDVRFATLCHDL--GKGLTPKALWPRHHGHGPAGVKLVEQLCARL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +AKL + L ++++ I W+KP
Sbjct: 289 RVPNDIRDLAKLVAEYHDLIHTLPILQPKTLVKLFDSIDAWRKPQ 333
>gi|225872192|ref|YP_002753647.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Acidobacterium capsulatum ATCC 51196]
gi|225791641|gb|ACO31731.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Acidobacterium capsulatum ATCC 51196]
Length = 628
Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 57/416 (13%), Positives = 134/416 (32%), Gaps = 30/416 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ + + + GGAVRD V+D+D + ++ + K ++
Sbjct: 16 QRNAVEQVRQAAMHAGMTVFLAGGAVRDLTSGFPVRDLDFSVQGNALKLKKALEKAGGEL 75
Query: 71 IPTSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
T+ ++++ R + ++ + D RRDFT+NA+
Sbjct: 76 WGEHEETRTLFFWFPGSIRVEVSSARREEYPKPGKPVYHWSTMLE-DLRRRDFTVNAMAI 134
Query: 130 DQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
D + G+ D+ R ++ + ++ LED R++R R A G + +
Sbjct: 135 SLNEGSYGLLLDPLNGIADMEARHLRLV--NNYGFLEDPSRMIRVTRLAARTGWEMDERT 192
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-----DVQE 240
++G+ +S E+ ++ ++ L + + G +++F
Sbjct: 193 RARYDNAREEGIAAMSDWLRGYELEEIGHEEDALKILKALEAEGWMQQLFPAWTAAKADA 252
Query: 241 ISLDQLSQVIEAEQVFEWKID-------SLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
+L++L ++ + D L + + K +L +
Sbjct: 253 AALEELHRIYVKLLMQGVHPDLSAAQMRLLTAKLAPKEFASLKKLLPCPGFVQQWEHLDD 312
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353
F ++T + KL Y + ++ + +
Sbjct: 313 AAKEFSVKLTAKETSTPSATWKLIANYQPEPVLWLAFTSKSAPVQTRFKNFFEVWPEARQ 372
Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
I +T D+ + G++L I+ + ++E + L
Sbjct: 373 KIPTVLMAEMRITA-DL--------PEYGHLLNELFFALIDGKLE-TEEAMRAFLE 418
>gi|289667584|ref|ZP_06488659.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Xanthomonas campestris pv. musacearum NCPPB4381]
Length = 410
Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 61/406 (15%), Positives = 123/406 (30%), Gaps = 57/406 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD+L+ D D P + + +
Sbjct: 2 KIYLVGGAVRDALLGQPAGDRDWVVVG-----ADQAQMEAQGFKPVGKDF--PVFLHPRS 54
Query: 88 YFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGL 142
+ R++ + Y + + D LRRDFTINA+ D+ ++ D G+
Sbjct: 55 GEEYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAIARDEDTGELFDPYNGV 114
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ R ++ +G A +ED +R+LR RF A A++ +
Sbjct: 115 RDLQARVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTIAPETAALMREMAASGELD 171
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E+ + L P + +++ + I ++ + E
Sbjct: 172 SLVPERVWQELRRALTCAQPSALLRTLHDTAALRVILPEIDALYGVPQRAEFHPEVDTGI 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + I+ D + + + + + +
Sbjct: 232 HQEMVSDMAARIAPGDALVGFAALTHDLGKALTPPEEWPRHVMHEQRGVAPLQALCERLK 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL-------------------------- 352
+ D +A + L+ + L + ++L
Sbjct: 292 VPQDHRQLAVIACREHLNVHRLPELSDRTVHELLVRCDAFRRPERIAQLALVCEADKRGR 351
Query: 353 -----------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
++ + D+ G+ G ++G L
Sbjct: 352 LGSEEAAYPQGEELKRLHAAALAINARDLAAEGLQ-GPQIGEALTK 396
>gi|160872708|ref|ZP_02062840.1| multifunctional CCA protein [Rickettsiella grylli]
gi|159121507|gb|EDP46845.1| multifunctional CCA protein [Rickettsiella grylli]
Length = 399
Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 71/408 (17%), Positives = 139/408 (34%), Gaps = 52/408 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ +++ D + P ++ K +++I + + +
Sbjct: 2 EIYLVGGAVRDQLLGFPIKERDYVVVGASPAEML----KQGFRLI--GKDF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ Y + D RRD TINAL G++ID G
Sbjct: 54 THEEYALARTERKIGPGYKGFSCYAAPDVTLEEDLKRRDLTINALAQTNNGEIIDPFQGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
D+ N+ ++ + ED +RILR RF A + ++
Sbjct: 114 KDIENKLLRHV---SPAFSEDPVRILRVARFMARFSSFGFRVAKETMALMKMMVSMGEVH 170
Query: 203 ----ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS------------LDQL 246
ER+W E + L +P I + + G +F ++ E+ L
Sbjct: 171 ALVPERVWQEFSIALTEPSPQAFIKTLEDCGALAVLFPELYELHTHDASIKVHSQQLSPP 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDK-----------KSILSMAKKFSLPREIRYFL 295
+ E+ D +RF L+ K + I S+ +++ +P
Sbjct: 231 HYLSVLEKAVLLTSDPEVRFAALLCDLGKGVANEETQKGVQKIRSLCQRYRIPHAYASLA 290
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVM------IAKLKIFLALHYNNLTHQDTCFIL 349
+ + E L++L + + + + + D L
Sbjct: 291 MMAAAYHLLCHRALALEASSLYHLLEKTNALKQSSCLDQFLLVCEADFRAYSGLDHRVYL 350
Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397
Q + + ++ ++ K G+ G +G L + S F
Sbjct: 351 QRERVLAAVEIVK-KISASELKKSGLM-GAALGKKLRE-HRIQALSDF 395
>gi|270612317|ref|ZP_06221707.1| poly(A) polymerase [Haemophilus influenzae HK1212]
gi|270318019|gb|EFA29298.1| poly(A) polymerase [Haemophilus influenzae HK1212]
Length = 157
Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 8 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 64
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D++R
Sbjct: 65 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 124
Query: 120 RDFTINALYADQQGKVIDYVG 140
RDFT+NALY + Q +
Sbjct: 125 RDFTVNALYYNPQDNTLRDYF 145
>gi|289663916|ref|ZP_06485497.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Xanthomonas campestris pv. vasculorum NCPPB702]
Length = 410
Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 61/406 (15%), Positives = 123/406 (30%), Gaps = 57/406 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD+L+ D D P + + +
Sbjct: 2 KIYLVGGAVRDALLGQPAGDRDWVVVG-----ADQAQMEAQGFKPVGKDF--PVFLHPRS 54
Query: 88 YFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGL 142
+ R++ + Y + + D LRRDFTINA+ D+ ++ D G+
Sbjct: 55 GEEYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAIARDEDTGELFDPYNGV 114
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ R ++ +G A +ED +R+LR RF A A++ +
Sbjct: 115 RDLQARVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTIAPETAALMREMAASGELD 171
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E+ + L P + +++ + I ++ + E
Sbjct: 172 SLVPERVWQELRRALTCAQPSALLRTLHDTAALRVILPEIDALYGVPQRAEFHPEVDTGI 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + I+ D + + + + + +
Sbjct: 232 HQEMVSDMAARIAPGDALVGFAALTHDLGKALTPPEEWPRHVMHEQRGVAPLQALCERLK 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL-------------------------- 352
+ D +A + L+ + L + ++L
Sbjct: 292 VPQDHRRLAVIACREHLNVHRLPELRDRTVHELLVRCDAFRRPERIAQLALVCEADKRGR 351
Query: 353 -----------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
++ + D+ G+ G ++G L
Sbjct: 352 LGSEEAAYPQGEELKRLHAAALAINARDLAAEGLQ-GPQIGEALTK 396
>gi|58697619|ref|ZP_00372820.1| poly A polymerase family protein [Wolbachia endosymbiont of
Drosophila simulans]
gi|58535877|gb|EAL59663.1| poly A polymerase family protein [Wolbachia endosymbiont of
Drosophila simulans]
Length = 303
Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 111/316 (35%), Positives = 160/316 (50%), Gaps = 14/316 (4%)
Query: 96 SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGD 155
D+ DGR+AKV FT +W+AD+ RRDFT NALYAD+ G + DY GG+ DL+ R + FIG+
Sbjct: 1 HDVKCDGRHAKVEFTNNWQADASRRDFTFNALYADKHGHIYDYFGGIEDLKVRRLNFIGN 60
Query: 156 AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215
A RI EDYLRILR FRF A ++ + L K ++ LS ERI EI KLLE
Sbjct: 61 AEDRIKEDYLRILRAFRFHAKICVGDLSDEILNVCKKHSHMIQNLSGERIRDEILKLLEC 120
Query: 216 KNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK 275
+P + M + ++I +E+ + LS + K+ LLR D+
Sbjct: 121 NDPFPTLKSMQESDVLQKIIP--KEVKCEILSSSLLFGTDALVKLALLLRTT----KNDR 174
Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335
S+ KF + + F N + LS E KK L+G ++ +KI
Sbjct: 175 LSLGEYVSKFLRLSNKQKKKLLFLLSNDIKTELSEKEQKKYISLFGRELYCDLVKICGVE 234
Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
N+ + +S + P FPL+GDD++ G PGK +G L KQ W +S
Sbjct: 235 SGENVD--------EYISFANTFNIPKFPLSGDDLISIGHQPGKSLGRNLELLKQHWEDS 286
Query: 396 SFQLSQEDLHHLLRKL 411
S+ L++E+L + L
Sbjct: 287 SYTLTKEELVLYAKSL 302
>gi|270635207|ref|ZP_06222062.1| poly(A) polymerase [Haemophilus influenzae HK1212]
gi|270317443|gb|EFA28942.1| poly(A) polymerase [Haemophilus influenzae HK1212]
Length = 163
Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF +
Sbjct: 7 FSRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---C 63
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119
+ I+ + ++ T R++ +G + + D++R
Sbjct: 64 RLVGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 123
Query: 120 RDFTINALYADQQGKVIDYVG 140
RDFT+NALY + Q +
Sbjct: 124 RDFTVNALYYNPQDNTLRDYF 144
>gi|225158886|ref|ZP_03725200.1| polynucleotide adenylyltransferase region [Opitutaceae bacterium
TAV2]
gi|224802504|gb|EEG20762.1| polynucleotide adenylyltransferase region [Opitutaceae bacterium
TAV2]
Length = 499
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 65/471 (13%), Positives = 124/471 (26%), Gaps = 76/471 (16%)
Query: 13 SDLINILSLLNKG-EDKSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKV 70
L+ +L L + + +VGG VRD+L+ L +D D+ + + R S
Sbjct: 20 PPLLAVLQALRRVPGARPRLVGGCVRDALLGLVAKDFDVEVCGVDFATLHRALSPFGATD 79
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINA 126
+ S+G IK+ + +D + R + T + + + RRDFTINA
Sbjct: 80 V-VGRSFGVIKLRLDGEEYDFSLPRRESKTGAGHRGFAVEPEPGLTDAEAAARRDFTINA 138
Query: 127 LYADQQGKVIDYVGG----------LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
+ D G +R+ + +ED LR+LR F+F
Sbjct: 139 IAWDPFADAGGGGGRREGGGGLIDPHGGVRDLRAGVLRHTSAAFVEDPLRVLRAFQFAGR 198
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ + + ++ ++ P + + G
Sbjct: 199 FDLTLAPETAALCRAISTTFTELPKERVWGEWQKWAEKSPKPARGLAVLEESGWLVHFPE 258
Query: 237 DVQEISLDQLSQVIEAEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
Q VF D+L + + L M +
Sbjct: 259 IAALRGCPQEPDWHPEGDVFAHTAFCCDALAALPAWQTLPPPRRRLLMLAMLAHDFGKPA 318
Query: 294 FLISFFNCNFNQKTLSIPE----------------------------------------- 312
+ + T E
Sbjct: 319 TTVRAVRAGAERWTSPGHESAGVPVAEAFLTRIGAPLDHAPFITPIVANHLVHHHGGKGG 378
Query: 313 -------IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW------- 358
+ I L + + + + L +++ +
Sbjct: 379 GGGYSDSQIRRLARRLAPATIEDLCLIMTGDSEGRPPRKSPESLVLINQLHTRAGELAIV 438
Query: 359 -KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
P L G ++ G PG +L + ++ +F L L
Sbjct: 439 DATPRPILLGRHLIAAGERPGPDFKPVLDAAYEAQLDGAFGDEAGALAWLA 489
>gi|294644871|ref|ZP_06722611.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacteroides ovatus SD CC 2a]
gi|292639809|gb|EFF58087.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Bacteroides ovatus SD CC 2a]
Length = 171
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 9/152 (5%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTS 74
I + + +VGG VRD + +DID+ + K + +
Sbjct: 20 QIAETADALGMECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133
++GT ++ R + R + +V + D RRDFTINAL
Sbjct: 80 KNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKA 139
Query: 134 ------KVIDYVGGLNDLRNRTIKFIGDAHHR 159
+ + GG N G R
Sbjct: 140 RFGGTGRPVRRHGGYEGKDNSHSARPGYHFQR 171
>gi|87119772|ref|ZP_01075669.1| tRNA nucleotidyltransferase [Marinomonas sp. MED121]
gi|86165248|gb|EAQ66516.1| tRNA nucleotidyltransferase [Marinomonas sp. MED121]
Length = 377
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 68/379 (17%), Positives = 131/379 (34%), Gaps = 31/379 (8%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+ L ++D D T P+ ++ Y + + K
Sbjct: 11 YLVGGAVRDELLKLPIKDRDWVVTGATPNDLLS------YNFQQVGKLF--PVFLHPKTK 62
Query: 89 FDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ G + D RRD TINA+ D G +ID G D
Sbjct: 63 EEYALARTEVKKGQGYTGFICDFSPNISLEEDLARRDLTINAIAKDNDGNLIDPYQGQQD 122
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
L+NR + + +ED LR++R RF A + + ++ K
Sbjct: 123 LKNRIFRHV---SDAFIEDPLRVIRVARFSARFTQFGFKIAPETLALMTKISQSGELESL 179
Query: 205 IWSEINK----LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
I + L NP + + + I D + ++ +++ +A Q +
Sbjct: 180 NQERIWRELEKSLSYPNPESFFNVLESCQALDHILADFEWPAVA--ARLKQANQDLLPTL 237
Query: 261 DSLLRFIVLI-SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
D+ I + S + + P + +++ N + E
Sbjct: 238 DNKYLVWAYICHQTPPNKLASALDQLTCPNQFKHYANLVSEFMHNTRLPMTAEAW----- 292
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379
D+ + + I +N + +D + + ++ D++K G G
Sbjct: 293 --DQWLTSLTAIKKPQVFNEFVKLLSLLTDTCSNDWHDLRSHIASVSAKDMMKQGHK-GA 349
Query: 380 KVGNILVHCKQEWINSSFQ 398
++G + + + SS
Sbjct: 350 ELGQAIKQTRIAKLESSLN 368
>gi|237729977|ref|ZP_04560458.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Citrobacter sp. 30_2]
gi|226908583|gb|EEH94501.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Citrobacter sp. 30_2]
Length = 411
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 67/345 (19%), Positives = 121/345 (35%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L ++D D P ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPIKDKDWVVVGATPQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y +AD RRD TINA+ D G++ID G
Sbjct: 54 TREEYALARTERKSGSGYTGFTCHAAADVTLEADLQRRDLTINAIARDDDGEIIDPYNGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
+DL NR ++ + ED LR+LR RF A Y ++
Sbjct: 114 DDLENRLLRHV---SSAFSEDPLRVLRVARFAARYAHLGFRIADETMTLMRDMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + + +F +V + E
Sbjct: 171 HLTPERVWKETEGALTTRNPQVFFQVLRDCDALRVLFPEVDALFGVPAPAQWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S + ++ + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLSPEVDVRFATLCHDL--GKALTPKALWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +AKL + I+++ I W+KP
Sbjct: 289 RVPNDIRDLAKLVSEFHDLIHTFPILQPKTIVKLFDSIDAWRKPQ 333
>gi|206602179|gb|EDZ38661.1| Putative polyA polymerase family protein [Leptospirillum sp. Group
II '5-way CG']
Length = 419
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 68/395 (17%), Positives = 136/395 (34%), Gaps = 15/395 (3%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK-- 81
K+ +VGG VRD +M +ID+A + +++ + + T K
Sbjct: 16 GRKAYVVGGWVRDMVMLRRPTRPEIDLAVEGDAVQWGESIAESFGVQVGRVSEFRTCKID 75
Query: 82 IICRKKY--FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV---- 135
++ DI R+D VV D RRDF++NA+ +
Sbjct: 76 VLHDGVPVRIDIAPCRTDSYPVPGGMPVVTASSIHEDLYRRDFSVNAMAFPLEDPFQGSF 135
Query: 136 --IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+D VGG DL + ++ + +D +RI R FRF G
Sbjct: 136 LLMDPVGGCEDLARKELRILSP--ASFDDDPVRIFRLFRFQERLGFHPDLQTSRALESAR 193
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
G + SS+ + + + I+ + E FL ++S + +V +
Sbjct: 194 LNGAFLRSSKSRLWDEIQAAIREESRCPIIFRWLLEKPWENFLPSLKMSSPRRRRVFAWD 253
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313
++ ++ ++ + R +R + +++L
Sbjct: 254 RLTTYESVFSPMGRFWKETLLLLALFYGIPRQECDRGLRLLGVPEKRAKIVRESLFPVSF 313
Query: 314 KKLFYL-YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372
K Y +++ + L+ + + +++ H LTG D++K
Sbjct: 314 GKRREKTYQPDILLNISPQMIFLNLVRGGAESLASFKKTVAEADHHPLRETSLTGRDLIK 373
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
GI ++GN+L + +E+L +
Sbjct: 374 EGIDSSPEIGNLLREIRTLREQGILNSRREELDWV 408
>gi|81299602|ref|YP_399810.1| polyA polymerase [Synechococcus elongatus PCC 7942]
gi|81168483|gb|ABB56823.1| polyA polymerase [Synechococcus elongatus PCC 7942]
Length = 412
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 65/405 (16%), Positives = 134/405 (33%), Gaps = 39/405 (9%)
Query: 29 SCIVGGAVRDSLMNL--SVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
+C+VGGAVRD+L+ D+D + + + + + +++
Sbjct: 25 ACLVGGAVRDALLGRLSDPLDLDWVVPNGAVETARSLARQHQAGFVLLDADRQIARVVFA 84
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
D + D RRDFTINA+ D Q + + G
Sbjct: 85 DMTVDFA--------------QQEGDRLEQDLRRRDFTINAIAYDWQRQTVIDPLGGQAD 130
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+ + + + +++D LR+LR +R A +I+ + A + L ++ ERI
Sbjct: 131 LEQGLLRMVAPEN-LVDDPLRLLRAYRQAAQLSF-SIEPETAAAIAQLAPLLPQVAGERI 188
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL- 264
W+E+ +LL P +V G+ F + + L+ + Q +
Sbjct: 189 WAELQRLLNVPPPHPVLVEAIASGLLAPWFPEATPECMSTLADHWQQLQAQAPEWPHWFT 248
Query: 265 -------------RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
++ + D+ L R + L+ + +T
Sbjct: 249 AIGPGGRLSHLAYAWLTRLLPSDRDRALESLLALKSSRAEQRSLLQLQQHWQDCQTSKAA 308
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
L+ + + + + L + Q + + + ++G D+
Sbjct: 309 TTAGQVALF--QTLGKLVPVLLVQLEASELRQ--TLLRRYQTPNDPIAHLQPLVSGTDLQ 364
Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
GI G ++G +L + F S + + + S
Sbjct: 365 VSLGIRGGPRLGQLLQDLRVAQAEQQFSDSAGAI-AFAARWLQES 408
>gi|89094177|ref|ZP_01167120.1| tRNA nucleotidyl transferase [Oceanospirillum sp. MED92]
gi|89081652|gb|EAR60881.1| tRNA nucleotidyl transferase [Oceanospirillum sp. MED92]
Length = 370
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 69/384 (17%), Positives = 133/384 (34%), Gaps = 31/384 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+N V D D P+ ++ P + I +
Sbjct: 2 KIYLVGGAVRDKLLNYPVYDKDWVVVGSSPEEMIE------SGYQPVGQDF--PVFIHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R+++ + Y + + D +RRD TINA+ D+QG ++D G
Sbjct: 54 TGEEYALARTEMKSGKGYTGFNYFADKNVTLEEDLVRRDLTINAMAMDEQGSLVDPYDGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA----KKGLK 198
DL +R ++ + ED LR+LR RF + Y ++ L+
Sbjct: 114 KDLADRILRHV---SPAFSEDPLRVLRVARFASRYNHLGFRVAQETLNLMQELALTDELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257
L++ER+W E + L K+P + ++ K++ +++ D +
Sbjct: 171 HLTTERVWKEFERALTEKSPWVFLSILHQTKASKKVLPELESWLDTDNWQSIFRNCCEVS 230
Query: 258 WKIDSLLRFIVLISWQDKKSILS-MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+ D + ++ + +E+ + ++
Sbjct: 231 KEADIRFACLSTLADLKNVPAFCDRLRTQKATKELTMQCADHSALLSTFDSQPAETKLEI 290
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376
+L+ L+ T + +L +I + ++K G
Sbjct: 291 LQGLDLFRRPQRLEKILSCVKALYREHSTQSLQPILDEISK-------IDPKQLIKEGYK 343
Query: 377 PGKKVGNILVHCKQEWINSSFQLS 400
G +G L ++ I F S
Sbjct: 344 -GAALGKELTQ-RKLIICEKFSSS 365
>gi|262042281|ref|ZP_06015446.1| multifunctional CCA protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259040345|gb|EEW41451.1| multifunctional CCA protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 413
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 72/345 (20%), Positives = 124/345 (35%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
KS +VGGAVRD+L+ L V+D D P +++ + + P + +
Sbjct: 2 KSYLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y +AD LRRD T+NAL D G +ID GG
Sbjct: 54 SREEYALARTERKSGAGYTGFTCYAAPDVTLEADLLRRDLTVNALAQDADGAIIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
NDLR R ++ + ED LR+LR RF A Y ++ A
Sbjct: 114 NDLRQRLLRHV---SPAFSEDPLRVLRVARFAARYAHLGFRIAEETQALMAAMVEAGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + K +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQTLRDCQALKVLFPEIDALYGVPAPAKWHPEIDTGL 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
+ ++S ++ + + + + + + E
Sbjct: 231 HTLMTVTMAAMLSPDVDVRFATLCHDL--GKGLTPKALWPRHHGHGPAGVKLVEQLCARL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +AKL + L ++++ I W+KP
Sbjct: 289 RVPNDIRDLAKLVAEYHDLIHTLPILQPKTLVKLFDSIDAWRKPQ 333
>gi|167622956|ref|YP_001673250.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella halifaxensis HAW-EB4]
gi|167352978|gb|ABZ75591.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella halifaxensis HAW-EB4]
Length = 425
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 132/344 (38%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+NL V+D+D + P +++ + K P + K
Sbjct: 15 KIYLVGGAVRDKLLNLPVKDLDYMVVGATPKQMLALGYNQVGKDFPVF--------LHPK 66
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ T Y + + D +RRD TINA+ D++G + D G+
Sbjct: 67 TQQEYALARTERKTAAGYGGFSVDAAPSVTLEQDLMRRDLTINAIAQDEEGNLYDPYQGI 126
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
+ R+++ + +ED LR+LR RF A + ++ A+
Sbjct: 127 QAIEKRSLRHV---SDAFVEDPLRVLRVARFAARFHSLGFTVAPETLTLMAEISQSGELQ 183
Query: 203 ----ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER++ E+NK L NP + + G +F +++ + + E
Sbjct: 184 ALTAERVYIELNKALATDNPQIFFQVLRDCGALAVLFPEIEALFGVPQPEKWHPEIDTGV 243
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L + ++ + ++ + + + + + I + + F
Sbjct: 244 HTMMVLEQVAKLTDDNSVRFAALVHDLGKALSPKEH-LPKHHGHGQKGLPLIKSLCERFR 302
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L + + +T ++++ W+KP
Sbjct: 303 VPNEYRDLALLVSDQHQNIHKITELRADTLVKLFDKADFWRKPQ 346
>gi|75910037|ref|YP_324333.1| polynucleotide adenylyltransferase region [Anabaena variabilis ATCC
29413]
gi|75703762|gb|ABA23438.1| Polynucleotide adenylyltransferase region [Anabaena variabilis ATCC
29413]
Length = 422
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 72/414 (17%), Positives = 138/414 (33%), Gaps = 46/414 (11%)
Query: 29 SCIVGGAVRDSLMN--LSVQDIDIATTILPDRVMR-IFSKTRYKVIPTSISYGTIKIICR 85
+ +VGGAVRD+++ D+D +V R I + + + +++
Sbjct: 25 AYMVGGAVRDAMLGRSREYLDLDFVIPSDAVKVARTIAHRYQAGFVLLDPVRRIARVVFP 84
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ D + D RRDFT+NA+ + + I
Sbjct: 85 QATADFA--------------QQEGDSLETDLHRRDFTVNAIAYNPHTQEIIDPLNGCAD 130
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+ + A + +D LR+LR +R A G I+ A L +++ER+
Sbjct: 131 LQAGVLRM-IAKANLKDDPLRLLRAYRQAAQLGF-TIEPATQAAIRDLASQLCQVAAERV 188
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL-- 263
EI LL + + N G+ K+ F + S +L+ V E + L
Sbjct: 189 RVEIGYLLASPQGHTWMAIAENDGLLKQFFPNTTPESFRKLAVVDEVADLLTKHWPQLGA 248
Query: 264 ----------------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+ + + D + +K + R + + KT
Sbjct: 249 ELQGYVRETVKTTWLGIAKLACLVHPDPRVAEIELQKLTYSRAEIRAVTTALKLFPQLKT 308
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFL-------ALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ + + V A + L A+ +N + I + L+
Sbjct: 309 ANTQREQYFVFQEAGMVFAAIAVLALVQDTLVEAMSGDNRLSAYSPLITRYLNPDDLVAH 368
Query: 361 PLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
P ++G +++ IPP VG +L I ++ + R+L+
Sbjct: 369 PTQLVSGKNLMIALDIPPSPLVGELLTEIAIARIEGKVTTTEAAI-AFARQLLK 421
>gi|238896556|ref|YP_002921297.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Klebsiella
pneumoniae NTUH-K2044]
gi|330003939|ref|ZP_08304786.1| multifunctional CCA protein [Klebsiella sp. MS 92-3]
gi|238548879|dbj|BAH65230.1| tRNA nucleotidyl transferase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|328536782|gb|EGF63097.1| multifunctional CCA protein [Klebsiella sp. MS 92-3]
Length = 413
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 72/345 (20%), Positives = 124/345 (35%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
KS +VGGAVRD+L+ L V+D D P +++ + + P + +
Sbjct: 2 KSYLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y +AD LRRD T+NAL D G +ID GG
Sbjct: 54 SREEYALARTERKSGAGYTGFTCYAAPDVTLEADLLRRDLTVNALAQDADGAIIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
NDLR R ++ + ED LR+LR RF A Y ++ A
Sbjct: 114 NDLRQRLLRHV---SPAFSEDPLRVLRVARFAARYAHLGFRIAEETQALMAAMVEAGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + K +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQTLRDCQALKVLFPEIDALYGVPAPAKWHPEIDTGL 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
+ ++S ++ + + + + + + E
Sbjct: 231 HTLMTVTMAAMLSPDVDVRFATLCHDL--GKGLTPKALWPRHHGHGPAGVKLVEQLCARL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +AKL + L ++++ I W+KP
Sbjct: 289 RVPNDIRDLAKLVAEYHDLIHTLPILQPKTLVKLFDSIDAWRKPQ 333
>gi|238910006|ref|ZP_04653843.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Tennessee str.
CDC07-0191]
Length = 413
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 78/413 (18%), Positives = 146/413 (35%), Gaps = 42/413 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L V+D D ++ + + P + +
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATLQEMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y +AD RRD TINAL D G++ID G
Sbjct: 54 THEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + + A L+
Sbjct: 114 RDLEARLLRHV---SPAFGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G + +F ++ + E
Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
L ++S + + + + + + + + + E +
Sbjct: 231 HTLMTLSMAAMLS--PQLDVRFATLCHDVGKGLTPKNLWPRHHGHGPAGVKLVEQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367
+ D +AKL + I+++ I W+KP + G
Sbjct: 289 RVPNDLRDLAKLVAEYHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRG 348
Query: 368 DD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQ-LS-QEDLHHLLRKLIA 413
P G+ + + +E + + F+ + +E+L R++ A
Sbjct: 349 RTGFEASDYPQGRWLREAWQVAQAVPTKEVVEAGFKGIEIREELTK--RRIAA 399
>gi|309789740|ref|ZP_07684320.1| Polynucleotide adenylyltransferase region [Oscillochloris
trichoides DG6]
gi|308228226|gb|EFO81874.1| Polynucleotide adenylyltransferase region [Oscillochloris
trichoides DG6]
Length = 417
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 63/408 (15%), Positives = 129/408 (31%), Gaps = 25/408 (6%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKT-RYKVIPT 73
I L +VGG +RD L+ + + +D+D+ + +
Sbjct: 16 ERITLLATNQGTALWLVGGVIRDLLLGVPLGRDLDLVVEGDVAALSAALVAELGANLRAA 75
Query: 74 SISYGTIKI--ICRKKYFDITTLRSDLITDGRYAKVVFTRD--WKADSLRRDFTINALYA 129
+GT + +C R+ + A + + D RRDF++NA+
Sbjct: 76 HPEFGTASVAFVCDGAEVVFDLARARREVYPQPAVLPVVEPATLEEDLGRRDFSVNAMAL 135
Query: 130 DQQG--------KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
+ + + D G DL R ++ + R +D R+LR R A
Sbjct: 136 ELRIVDGHLRAGRWHDPFAGQADLSQRCLRLLHQQSLR--DDPTRLLRGVRLAARLNLHP 193
Query: 182 IDSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+ + +G +L+ ERI E+ LE PL + H + +I +
Sbjct: 194 DPATQIQIRHAISQGYLSLLTPERILGELCLALEEPQPLRMLAHADAWELTPQIVPGLHA 253
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
A + + + + ++++++ LP
Sbjct: 254 TPHLAARLARYAAHPPRRVPVGQVVAGLFVYDLAAADLHALSQRYPLPSPFARLFSEIPR 313
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
L L+ + + + + + +
Sbjct: 314 LRDLGPQLQTDLRPSQIDLFLRPYSDVAIHVLHYAETGIAAQ-------RAIHYLEQMRP 366
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
PL G D+ + G+ PG +G IL + +++ Q ++E +
Sbjct: 367 LRLPLDGRDIQRLGVAPGPAIGKILAGLRTAYLDGVIQ-TREQAEAWV 413
>gi|156317793|ref|XP_001618045.1| hypothetical protein NEMVEDRAFT_v1g225564 [Nematostella vectensis]
gi|156197131|gb|EDO25945.1| predicted protein [Nematostella vectensis]
Length = 441
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
I+++ L + ++ +VGG VRD L+++ +D D+AT+ P++V F R
Sbjct: 338 AISVVERLQQAGYQAYLVGGCVRDLLLDIEPKDFDVATSATPEQVRAEFRNARV----IG 393
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ + + ++ + T R++ + ++ + RD
Sbjct: 394 RRFKLVHVHFGREIIETATFRANHPEGDEDENSNLSSRNESGRILRD 440
>gi|319785837|ref|YP_004145312.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pseudoxanthomonas suwonensis 11-1]
gi|317464349|gb|ADV26081.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pseudoxanthomonas suwonensis 11-1]
Length = 412
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 58/409 (14%), Positives = 127/409 (31%), Gaps = 59/409 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L D D +++ P + + +
Sbjct: 2 ETYLVGGAVRDELLGLPPGDRDWVVVGATAQQMLDA------GFRPVGRDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + + + + D LRRDFTINA+ G ++D GG+
Sbjct: 54 TGEEHALARTERKSGRGHRGFVVDADPSVTLEEDLLRRDFTINAIARGDDGTLVDPHGGM 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
+D+R+R ++ +G A ED LR+LR RF A + ++ +
Sbjct: 114 DDIRDRVLRHVGPA---FTEDPLRVLRAARFMARFAPLGFRVAPETMALMRQMAEAGELE 170
Query: 203 ERIWSEINK----LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ + + L + P + + G + +V + E
Sbjct: 171 TLVAERVWQELRRALASARPSAFLATLRECGALAVVLPEVDALYGVPQRAEYHPEVDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ ++ D + ++ + + + +
Sbjct: 231 HQQMVSDMAARLAPGDDLVGFAALTHDLGKALTPPHVLPRHIGHEGAGLKPLARLCERLR 290
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----------------- 361
+ +A+ L+ + L +L++L +++P
Sbjct: 291 VPLAHRKLAEAVCREHLNVHRLAELRDQTVLELLERCDAFRQPGQVARIALCCEADKRGR 350
Query: 362 --------------------LFPLTGDDV-VKYGIPPGKKVGNILVHCK 389
+ D+ + G+ G ++G L +
Sbjct: 351 LGSEEAEYPQGPELCRLHAAASAVNARDLALAEGLT-GTEIGKALRRAR 398
>gi|114048470|ref|YP_739020.1| metal dependent phosphohydrolase [Shewanella sp. MR-7]
gi|123131162|sp|Q0HSE2|CCA_SHESR RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|113889912|gb|ABI43963.1| metal dependent phosphohydrolase [Shewanella sp. MR-7]
Length = 416
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 125/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+NL ++D D P+++ ++ + K P + K
Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDFMVVGATPEQMQQLGYRQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D+ G + D G+
Sbjct: 54 TQQEYALARTERKVGLGYGGFSCYASPDVTLEQDLLRRDLTINAIAQDEAGNLHDPFHGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
D+ R ++ + ED LR+LR RF A + + ++
Sbjct: 114 ADIEARQLRHV---SAAFSEDPLRVLRVARFAARFHGLGFEIAPETMALMQHMSQTEELT 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E++K L +P + G K +F ++ + + E
Sbjct: 171 ALTPERVWQEVDKSLGGPHPEVFFEVLRQCGALKVLFPEIDALFGVPQPEKWHPEIDTGL 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L ++ + ++ + + + + I + +
Sbjct: 231 HTMMVLAQSSSMTEEKAVRFAALVHDLGKALSPKEHW-PKHHGHGQKGLPVIKSLCERLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L + + + I+++ W+KP
Sbjct: 290 VPNEYRDLALLVSDQHQNVHQAFELRSETIIKLFDKADFWRKPE 333
>gi|168186269|ref|ZP_02620904.1| trna nucleotidyltransferase family enzyme [Clostridium botulinum C
str. Eklund]
gi|169295718|gb|EDS77851.1| trna nucleotidyltransferase family enzyme [Clostridium botulinum C
str. Eklund]
Length = 394
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 73/407 (17%), Positives = 148/407 (36%), Gaps = 33/407 (8%)
Query: 16 INILSLLNK----GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +++L+ + + IVGGA+RDS++N+ +DIDI P ++ K
Sbjct: 12 LKVINLIKETCVNSNVNAYIVGGAIRDSILNVKPKDIDICIESNPINIISKL--NFVKEY 69
Query: 72 PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ T I+ D+ R + V + + D RRDFT NA+ D
Sbjct: 70 KYYEKFQTSTIVFENGIEIDLIRCRKEEYEFNGALPKVIPSNIEDDLFRRDFTCNAIAYD 129
Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ID GL D+ N ++ + +ED RI R ++ Y K D + +
Sbjct: 130 LANDILIDPFNGLEDITNGIVRKVHA--DSYMEDPTRIFRTIKYANRYDFKIHDKNEIRE 187
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
++ K I + + ++ E K N E ++ + +
Sbjct: 188 ALLKKSMDNISNDRIMREIVSLCKEEKWINNIFSC--------------NEFNILNIEKS 233
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ E F I+ + K + K L ++I+ ++ + ++ L
Sbjct: 234 MFLEDNFLCNYKDYNDRILKVFLSSKGNRHIFIKNSVLCKDIKKAFKNYDDGIISKNYLL 293
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ Y I +K+ N ++L+ I + K + G+
Sbjct: 294 NEKDNFNLYNRLKNFNIYDIKVLAHFKKNK---------YKLLNYIYNLKDIKLNVNGNC 344
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ + + KK +IL + +N+ + + L L +++ +
Sbjct: 345 LSELNLNNKKKYKDILNYLYMIKLNTGIRDDMKYLFENLGEILNVVK 391
>gi|307136008|gb|ADN33864.1| poly(A) polymerase [Cucumis melo subsp. melo]
Length = 439
Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 14/142 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L+ L K + +VGG VRD +++ +D DI T+ V RIF
Sbjct: 68 KPTRKVLNGLKKAGYEVYLVGGCVRDLILDRPPKDFDIITSAQLKEVSRIFLWCEI---- 123
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAK----------VVFTRDWKADSLRRDF 122
+ + ++++ + R+ + L+RDF
Sbjct: 124 VGRRFPICHVHIDGTIVEVSSFSTSSKPFDRHLNSAAIEKSMNCEEIDFVRWKNCLQRDF 183
Query: 123 TINALYADQQGKVIDYVGGLND 144
TIN + D V+ G +
Sbjct: 184 TINGMMYDPYNNVVYDYLGGME 205
>gi|152971977|ref|YP_001337086.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|166233861|sp|A6TE35|CCA_KLEP7 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|150956826|gb|ABR78856.1| tRNA nucleotidyl transferase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 413
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 72/345 (20%), Positives = 124/345 (35%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
KS +VGGAVRD+L+ L V+D D P +++ + + P + +
Sbjct: 2 KSYLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y +AD LRRD T+NAL D G +ID GG
Sbjct: 54 SREEYALARTERKSGAGYTGFTCYAAPDVTLEADLLRRDLTVNALAQDADGAIIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
NDLR R ++ + ED LR+LR RF A Y ++ A
Sbjct: 114 NDLRKRLLRHV---SPAFSEDPLRVLRVARFAARYAHLGFRIAEETQALMAAIVEAGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + K +F ++ + E
Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQTLRDCQALKVLFPEIDALYGVPAPAKWHPEIDTGL 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
+ ++S ++ + + + + + + E
Sbjct: 231 HTLMTVTMAAMLSPDVDVRFATLCHDL--GKGLTPKALWPRHHGHGPAGVKLVEQLCARL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +AKL + L ++++ I W+KP
Sbjct: 289 RVPNDIRDLAKLVAEYHDLIHTLPILQPKTLVKLFDSIDAWRKPQ 333
>gi|330880377|gb|EGH14526.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 407
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 20/219 (9%)
Query: 33 GGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDIT 92
GG VRD ++N++ +D D+AT P++V F R + + I ++ ++
Sbjct: 1 GGCVRDMMLNITPKDFDVATNATPEQVRAEFRNARI----IGRRFKLVHIHFGREIIEVA 56
Query: 93 TLRSDLITD--------------GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVID 137
T R++ D GR + + D+ RRDFTINALY D +V+D
Sbjct: 57 TFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRRDFTINALYYDPVSERVLD 116
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
Y G++D+RNR I+ IGD R ED +R+LR RF A I+ L
Sbjct: 117 YANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDF-GIEKHSAQPIRSLAPML 175
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ + S R++ E+ KL + + + + +F+ +F
Sbjct: 176 RDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 214
>gi|78044411|ref|YP_361234.1| polyA polymerase/tRNA nucleotidyltransferase family protein
[Carboxydothermus hydrogenoformans Z-2901]
gi|77996526|gb|ABB15425.1| polyA polymerase/tRNA nucleotidyltransferase family protein
[Carboxydothermus hydrogenoformans Z-2901]
Length = 441
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 92/454 (20%), Positives = 165/454 (36%), Gaps = 78/454 (17%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV-MRIFSKTRYKVIPT 73
L + ++ K+ VGG+VRD L++ V+D+D+AT P V ++ P
Sbjct: 4 LQKVREVIKDS--KTYFVGGSVRDMLLSRPVKDVDLATFQKPREVGEKLLKAFGGNFFPL 61
Query: 74 SIS---YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
Y + + + + L VF + D RRDFT+NAL
Sbjct: 62 KEELLIYRLV-FKDGGETYQVDIL------------PVFGESLEEDLRRRDFTVNALALP 108
Query: 131 QQGKV----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
G+ ID GG NDL+ R I+ I + ILED +RILR R G ++ +
Sbjct: 109 VNGEFPREVIDLFGGRNDLQARIIRMISAEN--ILEDPVRILRGIRLAGELGF-AVEQET 165
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS---- 242
+V + + +K + ER+ E+ K+ K + + +++ G F+ L ++E
Sbjct: 166 MVVFKQYIQYIKKMPGERVAEELKKIFTLKPAVPMVDMLFHTGFFEVFNLGLKEGYELYQ 225
Query: 243 ------------LDQLSQVIEAEQVFEW-----KIDSLLRFIVLISWQDKKSILSM---- 281
+D L+++ E + LL+ + K LS
Sbjct: 226 NYHHSETVYRHLIDTLNRMEELLEDNPLGIRSDYPPYLLKMVAFFHDIGKPGTLSYDKEG 285
Query: 282 ------------------AKKFSLPREIRYFLISFFNCNFNQ------KTLSIPEIKKLF 317
+ + L + +S I +L
Sbjct: 286 RTRFFGHEKESVNRLKPFLDYLNFSHREKRVLTVLIQNHMRLLSLKTAAKVSGEAILRLV 345
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIP 376
+ GD + L D F+ +++ + + L+G +++K +P
Sbjct: 346 HDTGDLFLELILLYL--ADKGEKARDDLEFLRGLINFYYGYLEFKEGLSGKEIMKTLNLP 403
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
VG+I + + W + S E L ++ RK
Sbjct: 404 ESPAVGHIKNYLLKAWARGEIRNSGEALDYMRRK 437
>gi|226941212|ref|YP_002796286.1| Cca [Laribacter hongkongensis HLHK9]
gi|254813695|sp|C1DAG2|CCA_LARHH RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226716139|gb|ACO75277.1| Cca [Laribacter hongkongensis HLHK9]
Length = 405
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 70/340 (20%), Positives = 124/340 (36%), Gaps = 18/340 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ IVGGAVRD L+ L V+D D T P+ + R P + +
Sbjct: 2 KTYIVGGAVRDRLLGLPVRDRDWVVTGETPESMRRR------GFRPVGRDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y F +AD RRD TINA+ D+ G+++D G
Sbjct: 54 THEEYALARTERKTARGYHGFSFHAAPDVTLEADLARRDLTINAMAEDENGELVDPFNGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILS 201
DL ++ +G+A +ED +RILR RF A +G + + G L
Sbjct: 114 QDLAAGILRHVGEA---FVEDPVRILRIARFAARFGFSIAEDTQNLMRFMVDDGEVDHLV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
ER+W E++K L P + + G I +V + E
Sbjct: 171 PERVWQELSKGLMEAQPSRFFTVLRDCGALARILPEVDALWGVPQRADYHPEVDTGVHAM 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+L + + L+ + + + + + +
Sbjct: 231 LVLDQSAR-DGLGLAARFAALCHDLGKALTPAELLPRHSGHEGRGEAPTRALCERLRVPA 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ +A L + H + + +L++L + ++P
Sbjct: 290 ECRDLALLTVSFHSHIHRIRELRPDTVLRLLRECDALRRP 329
>gi|224075475|ref|XP_002304649.1| predicted protein [Populus trichocarpa]
gi|222842081|gb|EEE79628.1| predicted protein [Populus trichocarpa]
Length = 525
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 95/237 (40%), Gaps = 15/237 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L+ L K + +VGG VRD ++ +D D+ T+ +V + F +
Sbjct: 70 IISRPTRVVLNGLKKKGYEVYLVGGCVRDLILKRIPKDFDVITSAELKQVRKAFHRCEI- 128
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDG-------RYAKVVFTRDW--KADSLRR 120
+ + ++++ + + R + RD+ + L+R
Sbjct: 129 ---VGKRFPICHVHVDDAIVEVSSFSTSQLKSDGKFNGNVRKPRGCSERDFIRWRNCLQR 185
Query: 121 DFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTIN L D + DY+GG+ D++ ++ + A+ +ED RILR R A
Sbjct: 186 DFTINGLMLDPYANIVYDYMGGITDIKKTKVRTVIPANLSFVEDSGRILRAIRIAARL-H 244
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
D ++ + + L RI E+N + + ++ M+ G+ + +
Sbjct: 245 FGFTRDLALSLKELSHSVLRLDKGRILLELNYMFAYGSAEASLRLMWRFGLLEILLP 301
>gi|260599317|ref|YP_003211888.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Cronobacter turicensis z3032]
gi|260218494|emb|CBA33665.1| Multifunctional CCA protein [Cronobacter turicensis z3032]
Length = 415
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 71/344 (20%), Positives = 124/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
KS +VGGAVRD+L+ L V+D D P +++ + + K P + +
Sbjct: 2 KSYLVGGAVRDALLGLPVKDKDWVVVGATPAQMLELGYQQVGKDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINA+ D G+ ID G
Sbjct: 54 THEEYALARTERKSGQGYTGFTCYAAPDVTLEQDLQRRDLTINAIAQDDCGEFIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
+DL+ R ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 DDLKARLLRHV---SPAFNEDPLRVLRVARFAARYAHLGFRIAPETLALMREMAENGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L +NP + + G K +F +V ++ E
Sbjct: 171 HLTPERVWKETESALTTRNPQIYFLMLRECGALKVLFPEVDKLFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S ++ L + + + ++ +
Sbjct: 231 HTLMTLSMAAMLSPAVDVRFAALCHDLGKG-LTPPHLWPRHHGHGPAGVRLVGQVCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +AKL + I+ + I W+KP
Sbjct: 290 VPNDIRDLAKLVAEFHDLIHTFPVLKPRTIVGLFDSIDAWRKPQ 333
>gi|156932580|ref|YP_001436496.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Cronobacter sakazakii ATCC BAA-894]
gi|166233853|sp|A7MJU1|CCA_ENTS8 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|156530834|gb|ABU75660.1| hypothetical protein ESA_00362 [Cronobacter sakazakii ATCC BAA-894]
Length = 415
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 71/344 (20%), Positives = 125/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
KS +VGGAVRD+L+ L V+D D P ++ + + K P + +
Sbjct: 2 KSYLVGGAVRDALLGLPVKDKDWVVVGATPAEMLALGYQQVGKDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINA+ D G+ ID G
Sbjct: 54 THEEYALARTERKSGQGYTGFTCYAAPDVTLEQDLQRRDLTINAIAQDDSGEFIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
+DL+ R ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 DDLKARLLRHV---SPAFNEDPLRVLRVARFAARYAHLGFRIAPETLSLMREMAENGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E L +NP + ++ G K +F +V ++ E
Sbjct: 171 HLTAERVWKETESALTTRNPQIYFLMLHECGALKVLFPEVDKLFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++S ++ L + + + ++ +
Sbjct: 231 HTLMTLAMAAMLSPAVDVRFAALCHDLGKG-LTPPHLWPRHHGHGPAGVRLVAQVCERLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +AKL + I+ + I W+KP
Sbjct: 290 VPNDIRDLAKLVAEFHDLIHTFPILKPRTIVGLFDSIDAWRKPQ 333
>gi|291288320|ref|YP_003505136.1| Polynucleotide adenylyltransferase region [Denitrovibrio
acetiphilus DSM 12809]
gi|290885480|gb|ADD69180.1| Polynucleotide adenylyltransferase region [Denitrovibrio
acetiphilus DSM 12809]
Length = 385
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 75/405 (18%), Positives = 142/405 (35%), Gaps = 38/405 (9%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIP 72
+L ++ +G + VGG VRD L++ +QDID + + V
Sbjct: 13 ELKKVM---LEGGYDAYFVGGCVRDILLDREIQDIDFVCFSHDYKEFATAVKEAVPSVWV 69
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
I+++ DI+ R + + D RDFTIN L D
Sbjct: 70 EFKD--NIRLVRGNTEIDISKPRGE--------------TLEEDLQMRDFTINNLAMDTG 113
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
G + L+ + +D LRILR FRF A G D+ +
Sbjct: 114 GNIFGDRTDLDS-----KVIRHISESTFRDDPLRILRSFRFMAQLGFTASDATFEKMRQE 168
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
K+ L +SERI++E++KL + +++ M G+F I + + D+++
Sbjct: 169 -KELLSQSASERIFNELDKLFKGDYACDSLRQMEETGVFSIITGGMSLDAYDEMAACAGR 227
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
VF +S ++K + + ++ + F S
Sbjct: 228 GLVFFAS-----SLFCRLSVEEKNKLAGKLNFPNSMKKKAERISVFTKELAELLKNSDDT 282
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNN-----LTHQDTCFILQVLSDIIHWKKPLFPLTG 367
+ + +++++ + D ++ L I ++ P L G
Sbjct: 283 AIRKLIYKYPDELDDGIRLYIIRSGCDGVDQCRVEDDEFRVMSQLPYI-NFNLPER-LNG 340
Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ + G+ PG +G IL K + + ++ K +
Sbjct: 341 AVLQELGVAPGPMMGEILKEVKPLMASGELNTLDKAAEYIKEKYL 385
>gi|257063275|ref|YP_003142947.1| tRNA nucleotidyltransferase/poly(A) polymerase [Slackia
heliotrinireducens DSM 20476]
gi|256790928|gb|ACV21598.1| tRNA nucleotidyltransferase/poly(A) polymerase [Slackia
heliotrinireducens DSM 20476]
Length = 454
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 74/448 (16%), Positives = 140/448 (31%), Gaps = 61/448 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSKTRYKVIPT 73
I +++ ++ VGG VRD L+ +DIDI +P D + RI S+ +V
Sbjct: 9 ARKIAEQVDRHGGRTFYVGGMVRDRLLGRENKDIDIEVHGIPADELGRILSELG-EVTAM 67
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYA 129
S+G + DI R + T + D + ++RRDFT+NAL
Sbjct: 68 GASFGIFGLKH--YDVDIAMPRKENATGRGHKDFEVFTDPFLGPEKAAMRRDFTMNALME 125
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D + G + R + ED LR+LR +F A +G + +D VA
Sbjct: 126 DVLTGEVLDFFGGQEDMRRGVIR-HVNDRTFAEDPLRVLRAAQFAARFGFR--VADETVA 182
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ S + +L+A P M F +++ + +
Sbjct: 183 LSSRMDLSALSSERIVGEMDKAMLKAAKPSIFFNEMRAMDQLDVWFPELKALIGVEQEPA 242
Query: 250 IEAE-QVFEWKI--------------DSLLRFIVLISWQ--------------------- 273
E V+ + + +
Sbjct: 243 FHPEGDVWNHTMRVVDLAAGLRGQASNPRYFMYASLVHDLGKIVTTQVIDGRIRAFGHEY 302
Query: 274 -DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI---AKL 329
+ + + + + + + L+ + Y+ + L
Sbjct: 303 EGVPIAKTFLGRLTNESGLIRYATNMMTLHMRPNMLAAQHAGRKPYMKLFDESVSPEDLL 362
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKK---PLFPLTGDDVVKYGIPPGKKVGNILV 386
+ A T +L + + + + + G D++ G PG G L
Sbjct: 363 LLSEADFCGRDVDSSTYTYGAILQENLAFYRDAMAKPFVQGRDLIDAGFEPGPDFGEALE 422
Query: 387 HCKQEWINSSFQLSQE----DLHHLLRK 410
+ I+ +S+E + LR+
Sbjct: 423 LGHKLRIS---LVSKEHALPQVLAFLRR 447
>gi|160896704|ref|YP_001562286.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Delftia acidovorans SPH-1]
gi|160362288|gb|ABX33901.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Delftia acidovorans SPH-1]
Length = 417
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 55/346 (15%), Positives = 109/346 (31%), Gaps = 23/346 (6%)
Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
+ +VGGAVRD L+ +V D D P+++ +P + +
Sbjct: 4 FQVYMVGGAVRDRLLGRAVHDRDWVVVGATPEQMAER------GFMPVGRDF--PVFLHP 55
Query: 86 KKYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141
+ + + R++ + Y V + D RRD TINA+ A +
Sbjct: 56 ETHEEYALARTERKSGPGYRGFVVQAAPDVTLEQDLARRDLTINAMAAPPDWDGKGAIDD 115
Query: 142 LNDLRNR-TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK--KGLK 198
+ + + ED +RILR RF A + E + + + + +
Sbjct: 116 PYGGQADLQARVLRHVTDAFREDPVRILRVARFAARFHEFTVAPETMALMQEMVAAGEVD 175
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER+W EI++ L + P + G + +++ + E
Sbjct: 176 ALVPERVWQEISRGLMERQPSRMFELLRECGALAVLLPELERLWGVPQRAEYHPEVDTGV 235
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L + + + S +K+
Sbjct: 236 HAMMVLDMAAQLDTPLPVRY----ACLVHDLGKGTTPADVLPRHIGHEHRSARLAEKVGE 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKP 361
+L +A + N+ + I+++L +KP
Sbjct: 292 RLRVPTDCRELGDVVAREHGNIHRSGELNGAAIVRLLERCDAIRKP 337
>gi|308271575|emb|CBX28183.1| hypothetical protein N47_G35070 [uncultured Desulfobacterium sp.]
Length = 494
Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats.
Identities = 82/478 (17%), Positives = 165/478 (34%), Gaps = 93/478 (19%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61
+++ + +I I L+ + + + IVGG+VRD L+ + D DI P++
Sbjct: 26 TAVLTESFVQKKHMIKINPLIPETKG-AYIVGGSVRDLLIERTPSDYDIVVPGSPEKYAS 84
Query: 62 IF-SKTRYKVIPTSISYGTI-KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
S+ + ++ I ++I K FD++ + + + D +
Sbjct: 85 DLTSQIKGHIVKIGKQNQMIFRVISEKDIFDVSAISGN--------------TIEDDLAK 130
Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFT+NA+ D ID GG+ DL ++ I+ + D D +R++R +R A
Sbjct: 131 RDFTLNAICYDLYSKTTIDPFGGVKDLLSKKIRMVSDKV--FNNDPVRLIRAYRIAAMLD 188
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
I+ + K + ++ER+ EI K+ N I MY G+ EIF ++
Sbjct: 189 F-EIEYETEKVIADNVKLIAKSAAERVKVEIFKIFSTLNSYKYINKMYETGLLFEIFPEL 247
Query: 239 QEISLDQLSQVIEAEQVFEWKI-------------------------------DSLLRFI 267
+S L V + ++L+
Sbjct: 248 SPLS-GCLQNKYHTHDVLNHSLIAYNKLEMLLNGYHADSEISGFAKQEMDNTRSAMLKCS 306
Query: 268 VLISWQDKKS---------------------ILSMAKKFSLPREIRYFLISFFNCNFN-- 304
+L+ K S L +A + ++ +
Sbjct: 307 ILLHDTGKPSSITVDNDNVHFFGHEKLSADITLRIAARLKFSNHETKYIDYIIRNHMKAL 366
Query: 305 ------QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC---------FIL 349
QK + F++ + L +A + F++
Sbjct: 367 HLYESFQKKPLTDKSIIRFFVKCRDNIPDLLLHAIADMEGKRNSDNVKNMDFLNFVSFLI 426
Query: 350 QVLSDIIHWKKPLFP-LTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+ + + +K P + G+D++ ++G+ P IL ++ ++ + E L
Sbjct: 427 KKYNLLYKIRKKEPPLINGNDLISEFGLLPSPLFKKILNFVEEARLSDNIHSRSEALL 484
>gi|254424062|ref|ZP_05037780.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Synechococcus sp. PCC 7335]
gi|196191551|gb|EDX86515.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Synechococcus sp. PCC 7335]
Length = 417
Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats.
Identities = 63/440 (14%), Positives = 140/440 (31%), Gaps = 54/440 (12%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ--DIDIATTILPDR 58
M V W +++ D++ +VGG+VRD L+ D+D+
Sbjct: 1 MSPFVPETWPFS---------IDELPDETYLVGGSVRDQLLQRRSNYLDLDLVLPYQSIE 51
Query: 59 VM-RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
+ + + + + +++ + D + D
Sbjct: 52 TALALAKRYKAGFVVLDEARQIARVVFDQVTIDFA--------------QQQGDHIEDDL 97
Query: 118 LRRDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRDFT+NA+ ++ID + G DL N+ ++ + + + +D LR++R +R A
Sbjct: 98 RRRDFTVNAIAFDPHSQELIDPLDGQIDLDNKILRMVSYQN--LADDPLRLMRAYRQAAQ 155
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ + K + +S ER+ SE++ LL + ++ +
Sbjct: 156 LDFTLENETQTAIGQLSPKLQQ-ISMERVRSELDALLSLSASSAQLNAIWENRLLAFCLP 214
Query: 237 DVQEISLDQ-------LSQVIEAEQVFEWKIDSLLRFI--------------VLISWQDK 275
S+ + ++Q+ F ++ ++ + + D
Sbjct: 215 HFDRSSIQRVMAIETTIAQLQATYPAFAQRLSGWVKPVPVGCYRSWIKVAKLSCLLSPDV 274
Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335
+ R ++ L + + + K++ L
Sbjct: 275 ACAAQELAQLKYSRSEAKSILKLVQAGPAITQLCSGPMDRAQQFFLFKLVGDAFLAVALL 334
Query: 336 H--YNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEW 392
I + L L G+ +++ G PG ++G IL +Q
Sbjct: 335 ALARGVKMPVLKPMIDRFLDPEDTVAHAQSLLNGNLLMQQLGASPGPQIGKILAAVEQAQ 394
Query: 393 INSSFQLSQEDLHHLLRKLI 412
+ E + + + I
Sbjct: 395 AEGQIKTQTEAIAWVKKHYI 414
>gi|85712840|ref|ZP_01043882.1| tRNA nucleotidyltransferase [Idiomarina baltica OS145]
gi|85693304|gb|EAQ31260.1| tRNA nucleotidyltransferase [Idiomarina baltica OS145]
Length = 366
Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats.
Identities = 84/398 (21%), Positives = 149/398 (37%), Gaps = 52/398 (13%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD L+ V D D + PD+++ + + K P + +
Sbjct: 7 IYLVGGAVRDQLLGCPVGDKDYVVVGATPDQMLALGYQQVGKDFPVF--------LHPQT 58
Query: 88 YFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ Y T D RRD TINA+ D+ G +ID GG
Sbjct: 59 REEYALARTERKQGQGYTGFQVNTETTITLTQDLERRDLTINAIAEDEHGHLIDPYGGQQ 118
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKAKKGLKI 199
D+ + ++ + +ED LR+LR RF+A + ++ L+ ++ LK
Sbjct: 119 DIERKLLRHV---SPAFVEDPLRVLRVARFYARFKPLGFTVAQETKNLMKAMARSGELKT 175
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQVIEAEQVFE 257
L +ER+W E K L P I + + ++ ++ S+ L Q+ + Q
Sbjct: 176 LVAERVWREWEKALATDAPAAFIELLVEIDAWSQVMPELTISPSSVSDLQQISQVTQCTH 235
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ +L ++ D I +++K LP + + + F S +L
Sbjct: 236 TRFATL-----MLRQGDTFEINLLSQKLRLPNQYKRLAQAVFGSRKWLLQPSPLSPAQLL 290
Query: 318 YL-YGDKVMIAKLKIFLALHYNNLTHQDTCF--ILQVLSDIIHWKKPLFPLTGDDVVKYG 374
L G + +I H ++ + I+ L+ + +V G
Sbjct: 291 ELANGADMWRQPERIEQLAHIRHIARPNISDGCIVSALTQARS-------IDASSIVARG 343
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ G +VG +L E L + R LI
Sbjct: 344 LK-GPEVGQVLNE--------------ERLLAIKRGLI 366
>gi|113971232|ref|YP_735025.1| metal dependent phosphohydrolase [Shewanella sp. MR-4]
gi|123324780|sp|Q0HG49|CCA_SHESM RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|113885916|gb|ABI39968.1| metal dependent phosphohydrolase [Shewanella sp. MR-4]
Length = 416
Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 126/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+NL ++D D P++++++ + K P + K
Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDFMVVGATPEQMLQLGYRQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D+ G + D G+
Sbjct: 54 TQQEYALARTERKVGLGYGGFSCYASPEVTLEQDLLRRDLTINAIAQDEAGNLHDPFHGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
D+ R ++ + ED LR+LR RF A + + ++
Sbjct: 114 ADIEARQLRHV---SAAFSEDPLRVLRVARFAARFHGLGFEIAPETMALMQHMSQTEELT 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E++K L +P + G K +F ++ + + E
Sbjct: 171 ALTPERVWQEVDKSLGGPHPEVFFEVLRQCGALKVLFPEIDALFGVPQPEKWHPEIDTGL 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L ++ + ++ + + + + I + +
Sbjct: 231 HTMMVLAQSSSMTEEKAVRFAALVHDLGKALSPKEHW-PKHHGHGQKGLPVIKSLCERLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L + + + I+++ W+KP
Sbjct: 290 VPNEYRDLALLVSDQHQNVHQAFELRSETIIKLFDKADFWRKPE 333
>gi|121997474|ref|YP_001002261.1| poly(A) polymerase [Halorhodospira halophila SL1]
gi|121588879|gb|ABM61459.1| poly(A) polymerase [Halorhodospira halophila SL1]
Length = 411
Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats.
Identities = 58/221 (26%), Positives = 95/221 (42%), Gaps = 21/221 (9%)
Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91
VGG VRD + +D D+AT P+ V ++F R + + + ++
Sbjct: 2 VGGGVRDLSLGREPKDFDVATDARPEEVRKLFRNCRL----IGRRFRLAHVHFGAEIIEV 57
Query: 92 TTLRSDLIT---------------DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135
T R+ +GR + D+LRRDFT+NALY + V
Sbjct: 58 ATFRALHPPEDSEGDDADGERVIENGRIVRDNVYGTLAEDALRRDFTVNALYYNIDDFSV 117
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
+D+ GG++DL + I+ IGD H R ED +R+LR RF G I
Sbjct: 118 VDHAGGMDDLEDGIIRLIGDPHERYQEDPVRMLRAVRFALKLGF-RIHPQTAAPMHDMAD 176
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ + R++ E KL + + L+A + + G+F+ +
Sbjct: 177 SVADMPPARLFDEALKLFMSGDALDAFEMLRHYGLFESLLP 217
>gi|294627669|ref|ZP_06706251.1| tRNA nucleotidyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294667097|ref|ZP_06732322.1| tRNA nucleotidyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292598021|gb|EFF42176.1| tRNA nucleotidyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292603107|gb|EFF46533.1| tRNA nucleotidyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 410
Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats.
Identities = 62/406 (15%), Positives = 124/406 (30%), Gaps = 57/406 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD+L++ D D P + + +
Sbjct: 2 KIYLVGGAVRDALLDQPAGDRDWVVVG-----ADQAQMEAQGFKPVGKDF--PVFVHPRS 54
Query: 88 YFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGL 142
+ R++ + Y + + D LRRDFTINA+ D+ ++ D G
Sbjct: 55 GEEYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAIARDEDTGQLFDPYNGA 114
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ R ++ +G A +ED +R+LR RF A A++
Sbjct: 115 RDLQARVLRHVGPA---FIEDPVRVLRAARFMARLAPLGFTLAPETAALMRDMAASGELD 171
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E+ + L P + +++ + I +V + E
Sbjct: 172 SLVPERVWQELRRALSCAQPSAFLRTLHDTDALRVILPEVDALYGVPQRAEFHPEVDTGI 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + ++ D + + + + + +
Sbjct: 232 HQEMVSDMAARLAPGDALVGFAALTHDLGKALTPQEQWPRHVMHEQRGVAPLQALCERLK 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ D +A + L+ + L + ++L +++P
Sbjct: 292 VPQDFRQLAIIACREHLNVHRLAELRDRTLHELLVRCDAFRRPERIAQLALVCEADKRGR 351
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVH 387
+ D+ G+ G ++G L
Sbjct: 352 LGSEEAAYPQGEALERLHAAALAINARDLAAEGLQ-GPQIGEALTK 396
>gi|218192024|gb|EEC74451.1| hypothetical protein OsI_09859 [Oryza sativa Indica Group]
Length = 558
Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 55/282 (19%), Positives = 113/282 (40%), Gaps = 31/282 (10%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
I +H W +L L + + +VGG VRD L+ + +D D+ TT ++ ++
Sbjct: 81 IPRHAW-------TVLHRLKRKGFAAYLVGGCVRDLLLKRAPKDFDVITTASLQQIKKMV 133
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--------- 114
+ + I + ++ ++++ ++ + + ++K
Sbjct: 134 FQ---RCIIIGKRFPICQVNMYGTKIEVSSFSTNANHVKGSKNIGCSEEFKRYDEGDILL 190
Query: 115 -ADSLRRDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
+S++RDFTIN+L+ K+ DYV G+ D+ + + A ED RILR R
Sbjct: 191 WQNSMKRDFTINSLFFNPFNFKIYDYVNGVRDISKNKVSTVIPARVSFKEDPARILRGLR 250
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
A G S+ A + + + R+ E+N LL +++ + G+
Sbjct: 251 IAARLGF-EFSSETSAAIRELSLSITDIDKARLMMELNYLLSYGAAASSLRLLRKYGLLD 309
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274
+ ++Q+ + D+ L + L++ D
Sbjct: 310 FLLP---------FQAAYMSDQMKDKSNDTDLMLMKLLANLD 342
>gi|17230628|ref|NP_487176.1| polyA polymerase [Nostoc sp. PCC 7120]
gi|17132231|dbj|BAB74835.1| polyA polymerase [Nostoc sp. PCC 7120]
Length = 422
Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 71/414 (17%), Positives = 138/414 (33%), Gaps = 46/414 (11%)
Query: 29 SCIVGGAVRDSLMN--LSVQDIDIATTILPDRVMR-IFSKTRYKVIPTSISYGTIKIICR 85
+ +VGGAVRD+++ D+D +V R I + + + +++
Sbjct: 25 AYMVGGAVRDAMLGRSREYLDLDFVIPSDAVKVARTIAHRYQAGFVLLDPVRRIARVVFP 84
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ D + D RRDFT+NA+ + + I
Sbjct: 85 QATADFA--------------QQEGDSLETDLHRRDFTVNAIAYNPHTQEIIDPLNGYAD 130
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+ + A + +D LR+LR +R A G I+ A L +++ER+
Sbjct: 131 LQAGVLRM-IAKANLKDDPLRLLRAYRQAAQLGF-TIEPTTQAAIRDLASHLCQVAAERV 188
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL-- 263
EI LL + + N G+ K+ F + S +L+ V E + + L
Sbjct: 189 RVEIGYLLASPQGHTWMAIAENDGLLKQFFPNTTPESFRKLAVVDEVADLLAKQWPQLGV 248
Query: 264 ----------------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+ + + D +K + R + + KT
Sbjct: 249 ELQGYVRETVKTTWLSIAKLACLVHPDPSVAEIELQKLTYSRAEIRAVTTAVKLFPQLKT 308
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFL-------ALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ + + V A + L A+ +N + I + L+
Sbjct: 309 ANTLREQYFVFQEAGMVFAAIAVLALVQDILVEAMSGDNRLSAYSPLITRYLNPDDLVAH 368
Query: 361 PLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
P ++G +++ +PP VG +L I ++ + R+L+
Sbjct: 369 PTQLVSGKNLMIALDLPPSPLVGELLTEIAIARIEGKVTTTEAAI-AFARQLLE 421
>gi|153206203|ref|ZP_01945466.1| multifunctional CCA protein [Coxiella burnetii 'MSU Goat Q177']
gi|165918249|ref|ZP_02218335.1| multifunctional CCA protein [Coxiella burnetii RSA 334]
gi|189081871|sp|A9KEZ9|CCA_COXBN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|120577333|gb|EAX33957.1| multifunctional CCA protein [Coxiella burnetii 'MSU Goat Q177']
gi|165918109|gb|EDR36713.1| multifunctional CCA protein [Coxiella burnetii RSA 334]
Length = 376
Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 74/378 (19%), Positives = 138/378 (36%), Gaps = 35/378 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L V++ D P+ + P + + +
Sbjct: 17 KVYLVGGAVRDQLLGLPVKEKDWVVVGATPEEMTAR------GFKPVGKEF--PVFLHPE 68
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ Y F + D RRD TINA+ +G++ID GG
Sbjct: 69 THEEYALARTERKVAKGYKGFTFYAAPDVSLEEDLKRRDLTINAIAETPEGQLIDPYGGQ 128
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKIL 200
DL+N+ ++ + ED +R+LR R + + +I D L K + L
Sbjct: 129 EDLKNKVLRHV---SVAFQEDPVRVLRLARLATKFPDFSIHPDTLELMKKMVCAGEIDAL 185
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER+W E+N+ L + P + G +F +++ + + V +
Sbjct: 186 VPERVWQELNRALGNEKPTRFFTVLNQCGALAILFPEIKMEG----KGMAALQSVTDKTP 241
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
L+RF L S + I +A ++ +P E I + L+ + L
Sbjct: 242 SPLIRFATLQSDLPPEIIQKLAGRYRVPNEYADLAILVARFGSDYVNLNRMDETSLLNFL 301
Query: 321 GDKVMIAKLK-----IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375
+ + + IF ++ T I +++ + + + +
Sbjct: 302 LKTDALRRQERFDQFIFTCDLISSTTSSQPKKIKEIIKAVKSVDIKP-------LQEKQL 354
Query: 376 PPGKKVGNILVHCKQEWI 393
G+ L + E I
Sbjct: 355 K-GEAFAKALEKLRLEAI 371
>gi|284008583|emb|CBA75158.1| multifunctional Cca protein [includes [Arsenophonus nasoniae]
Length = 412
Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 71/345 (20%), Positives = 133/345 (38%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P+ ++++ + K P + K
Sbjct: 2 QIYLVGGAVRDQLLGLPVSDRDWVVVGATPEDLIKLGFQQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ + G++ID G
Sbjct: 54 TREEYALARTERKTGVGYTGFSCYAAPDVTIEEDLLRRDLTINAIAQTEDGQLIDPFHGE 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198
D++NR ++ + ED LRILR RF A ++ ++ L+ + + L
Sbjct: 114 QDIKNRLLRHV---SAAFAEDPLRILRVARFAARLAKQKFTIANETQSLMEKMIFNQELS 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+S+ER+WSE K L++ P +++ G +F ++ + L + E+ +
Sbjct: 171 TISAERVWSETEKALQSSAPETYFHVLHDCGALAILFPEINQ--LFGIPSAAESHAAMDT 228
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-FNCNFNQKTLSIPEIKKLF 317
I +LL + D A + + + + I +
Sbjct: 229 GIHTLLTLKMAALLTDNIETRFAALCHDFGKALTPPEQWPDHRDHAIKAIPLIEAMCNRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + ++ + + + W+KP
Sbjct: 289 RIPNRMKELAKLVARFHQQIHQINQLQPESVINLFNQLDSWRKPE 333
>gi|161830664|ref|YP_001597649.1| multifunctional CCA protein [Coxiella burnetii RSA 331]
gi|73619765|sp|Q820V9|CCA_COXBU RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|189081872|sp|A9NAS1|CCA_COXBR RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|161762531|gb|ABX78173.1| multifunctional CCA protein [Coxiella burnetii RSA 331]
Length = 376
Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 75/378 (19%), Positives = 138/378 (36%), Gaps = 35/378 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L V++ D P+ + P + + +
Sbjct: 17 KVYLVGGAVRDQLLGLPVKEKDWVVVGATPEEMTAR------GFKPVGKEF--PVFLHPE 68
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ Y F + D RRD TINA+ +G++ID GG
Sbjct: 69 THEEYALARTERKVAKGYKGFTFYAAPDVSLEEDLKRRDLTINAIAETPEGQLIDPYGGQ 128
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKIL 200
DL+N+ ++ + ED +R+LR R + + +I D L K + L
Sbjct: 129 EDLKNKVLRHV---SVAFQEDPVRVLRLARLATKFPDFSIHPDTLELMKKMVCAGEIDAL 185
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ERIW E+N+ L + P + G +F +++ + + V +
Sbjct: 186 VPERIWQELNRALGNEKPTRFFTVLNQCGALAILFPEIKMEG----KGMAALQSVTDKTP 241
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
L+RF L S + I +A ++ +P E I + L+ + L
Sbjct: 242 SPLIRFATLQSDLPPEIIQKLAGRYRVPNEYADLAILVARFGSDYVNLNRMDETSLLNFL 301
Query: 321 GDKVMIAKLK-----IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375
+ + + IF ++ T I +++ + + + +
Sbjct: 302 LKTDALRRQERFDQFIFTCDLISSTTSSQPKKIKEIIKAVKSVDIKP-------LQEKQL 354
Query: 376 PPGKKVGNILVHCKQEWI 393
G+ L + E I
Sbjct: 355 K-GEAFAKALEKLRLEAI 371
>gi|115450525|ref|NP_001048863.1| Os03g0131400 [Oryza sativa Japonica Group]
gi|108706021|gb|ABF93816.1| polyA polymerase family protein, expressed [Oryza sativa Japonica
Group]
gi|113547334|dbj|BAF10777.1| Os03g0131400 [Oryza sativa Japonica Group]
gi|222624145|gb|EEE58277.1| hypothetical protein OsJ_09295 [Oryza sativa Japonica Group]
Length = 558
Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/310 (18%), Positives = 116/310 (37%), Gaps = 26/310 (8%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
I +H W +L +L + + +VGG VRD L+ + +D D+ TT ++ ++
Sbjct: 81 IPRHAW-------TVLHMLKRKGFAAYLVGGCVRDLLLKRAPKDFDVITTASLQQIKKMV 133
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK--------- 114
+ + I + ++ ++++ ++ + + ++K
Sbjct: 134 FQ---RCIIIGKRFPICQVNMYGTKIEVSSFSTNANHVKGSKNIGCSEEFKRYDEGDILL 190
Query: 115 -ADSLRRDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
+S++RDFTIN+L+ K+ DYV G+ D+ + + A ED RILR R
Sbjct: 191 WQNSMKRDFTINSLFFNPFNFKIYDYVNGVRDISKNKVSTVIPARVSFKEDPARILRGLR 250
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
A G S+ A + + + R+ E+N LL +++ + G+
Sbjct: 251 IAARLGF-EFSSETSAAIRELSLSITDIDKARLMMELNYLLSYGAAASSLRLLRKYGLLD 309
Query: 233 EIFLDVQEISLDQLSQVIEAEQV----FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ DQ+ + +D LL ++L+
Sbjct: 310 FLLPFQAAYMSDQMKDKSNDTDLMLMKLLANLDKLLSADQPCPSCLWLALLTFHSALVNS 369
Query: 289 REIRYFLISF 298
+ +F
Sbjct: 370 PHDAQVIRAF 379
>gi|166710584|ref|ZP_02241791.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Xanthomonas oryzae pv. oryzicola BLS256]
Length = 410
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 61/406 (15%), Positives = 123/406 (30%), Gaps = 57/406 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD+L+ D D P + + +
Sbjct: 2 KIYLVGGAVRDALLGQPAGDRDWVVVG-----ADQAQMEAQGFKPVGKDF--PVFLHPRS 54
Query: 88 YFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGL 142
+ R++ + Y + + D LRRDFTINA+ D+ ++ D G
Sbjct: 55 GEEYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAIARDEDTGELFDPHNGA 114
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ ++ +G A +ED +R+LR RF A A++ +
Sbjct: 115 RDLQACVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTIAPETAALMREMAASGELD 171
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E+ + L P + +++ + I ++ + E
Sbjct: 172 SLVPERVWQELRRALTCAQPSAFLRTLHDTDGLRAILPEIDALYGVPQRAQFHPEVDTGI 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + I+ D + + + + + +
Sbjct: 232 HQEMVSDMAARIAPGDALVGFAALTHDLGKALTPPEQWPRHIMHEQRGVAPLQALCERLK 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ D +A + L+ + L + ++L +++P
Sbjct: 292 VPQDYRQLAVIACREHLNVHRLPELRDRTVHELLVRCDAFRRPERIAQLALVCEADKRGR 351
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVH 387
+ D+ G+ G ++G L
Sbjct: 352 LGSEEAAYPQGEELKGLHAAASAINARDLAADGLQ-GPQIGEALTK 396
>gi|153872945|ref|ZP_02001694.1| poly(A) polymerase [Beggiatoa sp. PS]
gi|152070590|gb|EDN68307.1| poly(A) polymerase [Beggiatoa sp. PS]
Length = 161
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+ +L LNK ++ +VGG VRD L+ +D D+ T LP+++ IF R
Sbjct: 70 LMSPAALTVLYQLNKAGYQAFLVGGGVRDVLLGRVPKDFDVVTNALPEQIKNIFRSCRL- 128
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGR 103
+ + ++ ++ T R+ G
Sbjct: 129 ---IGRRFVLAHVRINREIVEVATFRAHHHKGGG 159
>gi|332994270|gb|AEF04325.1| tRNA nucleotidyltransferase [Alteromonas sp. SN2]
Length = 392
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 65/399 (16%), Positives = 121/399 (30%), Gaps = 45/399 (11%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+L+ +V + D + P +++ + + K
Sbjct: 2 QVYLVGGAVRDTLLGRTVTERDYVVVGATPAQMLAK------GFTQVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y + + D RRD T+NA+ DQ G++ID G
Sbjct: 54 TSEEYALARTERKMGSGYTGFECDASTSVTLEEDLKRRDLTVNAIARDQDGELIDPYHGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ + ++ + ED LR+ R RF Y S+
Sbjct: 114 KDLQQKILRHV---SEAFSEDPLRVFRVARFATRYAYLGFTIAEETLSLMTDMAKSGELT 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------------SLDQL 246
S+ER+W E + L P + + F ++ + + +
Sbjct: 171 SLSAERVWQETKRSLLEATPEVFFKTLKACNGLDDWFAELSQSESAFNTAIQTLKQIQRQ 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR-------EIRYFLISFF 299
+ EQ +RF S + M K+ + + S
Sbjct: 231 THSQPQEQDASPSAPIEVRFAAFCSGLSLNDVQQMCKRLKVQNTVSDIAEMVSAHKTSLL 290
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT-----CFILQVLSD 354
NC+ + K + L + + +
Sbjct: 291 NCDKLDADTLLTVFNKTDAWRRPERFRLFLNALQPIAMQPSDLAQAGAMSSLHWPEREAL 350
Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
I + ++ G G ++ L + K E I
Sbjct: 351 ITQALVAANAVDVQHIIAQGFK-GPEIREALNNAKLEKI 388
>gi|320539905|ref|ZP_08039564.1| putative fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Serratia symbiotica str. Tucson]
gi|320030091|gb|EFW12111.1| putative fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Serratia symbiotica str. Tucson]
Length = 414
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 62/344 (18%), Positives = 118/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+++ V D D P ++ I + K P +
Sbjct: 2 KIYLVGGAVRDGLLDIPVFDRDWVVVGATPAELLAIGYQQVGKDFPVF--------LHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D LRRD TINA+ +G +ID G+
Sbjct: 54 THEEYALARTERKSGHGYTGFTCCAAPDVTLEEDLLRRDLTINAIARSSEGVLIDPYQGV 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ ++ + ED LR+LR RF A + +
Sbjct: 114 ADLQAHVLRHV---SDAFAEDPLRVLRVARFAARFAHLGFSIAEETLELMRHMAHSGELA 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
++ER+W E K L++++P + + +F ++ + E
Sbjct: 171 ALTAERVWQETEKALQSQHPQVYFQVLRDCDALAVLFPEINALFGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + ++ + + + + E+ +
Sbjct: 231 HTMMTLAIAAQLSPAVEVRFSALCHDLGKGLTPQKCW-PHHHGHGLAGVRLVEELCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 290 IPNPVRDLAKLVAEYHDLIHTVNKLRPQTLLKLFDAIDVWRKPQ 333
>gi|226289247|gb|EEH44759.1| tRNA nucleotidyltransferase [Paracoccidioides brasiliensis Pb18]
Length = 646
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 86/479 (17%), Positives = 149/479 (31%), Gaps = 97/479 (20%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK---------------------- 65
GG VRD L+ + DID+A + ++ +
Sbjct: 155 LRFAGGWVRDKLLGVESHDIDVAINSMTGEKFGEGLKEYLSIPGNLRKYKIFHPSNPSVV 214
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + P + T D LR + TD V + DSLR
Sbjct: 215 DFIKLHKIEKNPERSKHLETATTRMFGLDIDFVNLRKETYTDESRNPQVEVGTPEEDSLR 274
Query: 120 RDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD T+NAL+ + ++I+ G D++N+ I+ + +D LR+LR RF +
Sbjct: 275 RDATVNALFYNIHTELIEDFTGQGLQDMKNKIIRTPMEPFQTFKDDPLRVLRLIRFASRL 334
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVH----------M 225
G I A K +S ERI EI K L +PL A+ +
Sbjct: 335 GYTIDCDTEEAMKIDAIKSALKAKISQERIGVEIEKTLRGPDPLTALQRINRLGLYDTIL 394
Query: 226 YNGGIFKEIFLDVQEISLDQLSQV------------------------IEAEQVFEWKID 261
N + E D LS + E E+ F W +
Sbjct: 395 ANHQDNVGVDTSSWERGYDVLSLLLSNSAENGTGFEKSRQYVRDILIRNENERYFSWLLA 454
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+L + + K M + ++ ++ N
Sbjct: 455 ALAPWTTVPDPIPSKPTEPMPRATTVAKDSLRADNKAANIITAASKYHKMISHMKSSFLK 514
Query: 322 DKVM-------------------IAKLKIFLALHYNNLTHQDTCFILQVL---------S 353
D++ +L LA+ + Q+ + Q
Sbjct: 515 DEIADTPPEVRAKVGQFIRTIGRDWRLCFVLAIVREAMQGQEPHQLFQSYEKFLLYIEND 574
Query: 354 DIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
+++ + G D+V G+ G +G L + + + + S+E + LLR+
Sbjct: 575 NLLDAFSLRPLINGHDIVSALGVKTGPWMGTALEMLIEWQLRNPEETSKEAAISELLRR 633
>gi|237795262|ref|YP_002862814.1| hypothetical protein CLJ_B2031 [Clostridium botulinum Ba4 str. 657]
gi|229261178|gb|ACQ52211.1| conserved domain protein [Clostridium botulinum Ba4 str. 657]
Length = 398
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 74/389 (19%), Positives = 129/389 (33%), Gaps = 38/389 (9%)
Query: 16 INILSLLNKG----EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +++ + K K I+GGA+RD ++N + DIDI P ++ K
Sbjct: 12 LEVINEIKKASIETNIKIYIIGGAIRDIILNNKINDIDICLEGEPKELIYRMK--NIKEY 69
Query: 72 PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ T I D+ R + + + K + RRDFTINAL D
Sbjct: 70 IYYDEFHTSTIKFQNNIQIDLIGCRKEKYEYEGALPKITLSNIKNNLERRDFTINALAYD 129
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
I + + K I ++ +ED RI R ++ YG K D + S
Sbjct: 130 IVEDKILDFFNGMEDLRKG-KIIKIHNNSYMEDGTRIFRAIKYSIRYGFKIEDEKEIRES 188
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
I I + + + E ++ + Q
Sbjct: 189 ITKGTLKNISNDRIVSELYSLCTEENW-------------------------IEAIKQCY 223
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + L I+L IL++ F+ + F +K +
Sbjct: 224 KYNLLDIDLNLLGLENILLDYSNIYVRILNVLYSIKGEHGQSIFIDNSFLDKDLRKPIDK 283
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFPL 365
K Y +I+ L + + F +V + + + +
Sbjct: 284 YLQNKEIYSLSLSNAKDNYEIYKILSKTYSFERVLLAWNLKFRYKVYNYEKNIRVIDLTM 343
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
G D+ K GI GK++G IL + K+ IN
Sbjct: 344 NGQDIKKLGIKEGKEIGLILEYMKKYKIN 372
>gi|282599943|ref|ZP_05972449.2| hypothetical protein PROVRUST_06072 [Providencia rustigianii DSM
4541]
gi|282567252|gb|EFB72787.1| multifunctional CCA protein [Providencia rustigianii DSM 4541]
Length = 419
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 67/344 (19%), Positives = 125/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L + D D P+ ++ + K P + K
Sbjct: 10 KIYLVGGAVRDKLLGLPISDRDYVVVGTTPEAMLAKGFQQVGKDFPVF--------LHPK 61
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ Y + D LRRD TINA+ G++ID G+
Sbjct: 62 THEEYALARTERKIGAGYTGFSCYSAPDVTIEDDLLRRDLTINAIAQSDTGELIDPYHGV 121
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL+NR ++ + LED LR+LR RF A Y ++ ++
Sbjct: 122 KDLKNRVLRHV---SDAFLEDPLRVLRVARFAARYYQQGFRVAPETMTLMQSMVETGELS 178
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E +K + + +P + + G +F ++ + + E
Sbjct: 179 HLTPERVWVETHKAIMSHSPQVYFEVLRDCGALAVLFPEIDHLFGVPAPEKWHPEIDTGI 238
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
I ++ I +S ++ + + I + +
Sbjct: 239 HILMVMGVIATLSNDIDVRFAALCHDLGKALTPKELW-PSHPNHGEAGIPLIEALCERLK 297
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A+L + + + I+Q+ + W+KP
Sbjct: 298 IPTSARDLARLAARYHDKIHVIGKLNAQEIVQIFDGLDSWRKPE 341
>gi|328950700|ref|YP_004368035.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Marinithermus hydrothermalis DSM 14884]
gi|328451024|gb|AEB11925.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Marinithermus hydrothermalis DSM 14884]
Length = 438
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 76/426 (17%), Positives = 133/426 (31%), Gaps = 64/426 (15%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPD-RVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD + D D + P R + G +++
Sbjct: 21 YLVGGAVRDLWLGRHPADFDFVV-LDPRLEATRAAKTLGGSAFLLDEARGHWRVVKEGLT 79
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148
D T L D LRRDFT+NAL A+Q+G V+ +DL +
Sbjct: 80 LDYTPLPPG--------------GLVEDLLRRDFTVNALAANQRGLVLGPSLARHDLAHG 125
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKGLKILSSERIW 206
++ + + + D LR LR R G K A +A + + ER+
Sbjct: 126 WLRAVRRQN--LWADPLRSLRAVRLAYTLGLKLEARTARWVRAHAEALRFSTRPAWERVR 183
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ---------EISLDQLSQVIEAEQVF- 256
E+ KLL + N + + G+ ++ L+ +E
Sbjct: 184 DELEKLLASPYAANGFLELERRGLLAAYLPELAAGVGVAQGGYHHLEVFRHQLEVLAQLV 243
Query: 257 --EWKIDSLLRFIVLISWQDKKSILSM-----------------------AKKFSLPREI 291
K D LR+ L+ K + K+ P +
Sbjct: 244 RIHPKADPALRWAALLHDVAKPLVRQWDPQRGYYRFFGHAEVGAGVAREVLKRLREPTAL 303
Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ + + S + + + + + + Q+
Sbjct: 304 VRRVYRLVQHHMHLPPKSRRGLLRWVHKHRALLPDLLYLQLADREATRGPRANPEETAQL 363
Query: 352 L------SDIIHWKKPLFP-LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED 403
+I+ P L+G +V+ GIPPG +VG +L + + +E
Sbjct: 364 WATLETVREILEHHPLEPPLLSGREVMALLGIPPGPEVGRLLRALAEAQAVGDVRTPEEA 423
Query: 404 LHHLLR 409
+R
Sbjct: 424 -RAFIR 428
>gi|225682071|gb|EEH20355.1| tRNA nucleotidyltransferase [Paracoccidioides brasiliensis Pb03]
Length = 646
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 83/479 (17%), Positives = 151/479 (31%), Gaps = 97/479 (20%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK---------------------- 65
GG VRD L+ + DID+A + ++ +
Sbjct: 155 LRFAGGWVRDKLLGVESHDIDVAINSMTGEKFGEGLKEYLSIPGNLRKYKIFHPSNPSVV 214
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + P + T D LR + TD V + DSLR
Sbjct: 215 DFIKLHKIEKNPERSKHLETATTRMFGLDIDFVNLRKETYTDESRNPQVEVGTPEEDSLR 274
Query: 120 RDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD T+NAL+ + ++I+ G D++N+ I+ + +D LR+LR RF +
Sbjct: 275 RDATVNALFYNIHTELIEDFTGQGLQDMKNKIIRTPMEPFQTFKDDPLRVLRLIRFASRL 334
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G I A K +S ERI EI K L +PL A+ + G++ I
Sbjct: 335 GYTIDCDTEEAMKIDAIKSALKAKISQERIGVEIEKTLRGPDPLTALQRINRLGLYDTIL 394
Query: 236 LDVQEI----------------------------------SLDQLSQVIEAEQVFEWKID 261
+ Q+ + + E E+ F W +
Sbjct: 395 ANHQDNVGVDTSSWERGYDLLSLLLSNSAENGTGFEKSRQYVRDILIRNENERYFSWLLA 454
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+L + + K M + ++ ++ N
Sbjct: 455 ALAPWTTVPDPIPSKPTEPMPRATTVAKDSLRADNKAANIITAASKYHKMISHMKSSFLK 514
Query: 322 DKVM-------------------IAKLKIFLALHYNNLTHQDTCFILQVL---------S 353
D++ +L LA+ + Q+ + Q
Sbjct: 515 DEIADTPPEVRAKVGQFIRTIGRDWRLCFVLAIVREAMQGQEPHQLFQSYEKFLLYIEND 574
Query: 354 DIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
+++ + G D++ G+ G +G L + + + + S+E + LLR+
Sbjct: 575 NLLDAFSLRPLINGHDIISALGVKTGPWMGTALEMLIEWQLRNPEETSKEAAISELLRR 633
>gi|168184530|ref|ZP_02619194.1| conserved domain protein [Clostridium botulinum Bf]
gi|182672350|gb|EDT84311.1| conserved domain protein [Clostridium botulinum Bf]
Length = 398
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 75/389 (19%), Positives = 129/389 (33%), Gaps = 38/389 (9%)
Query: 16 INILSLLNKG----EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ +++ + K K I+GGA+RD ++N + DIDI P ++ K
Sbjct: 12 LEVINEIKKASIETNIKIYIIGGAIRDIILNNKINDIDICLEGEPKELIYRMK--NIKEY 69
Query: 72 PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ T I D+ R + + + K D RRDFTINAL D
Sbjct: 70 IYYDEFHTSTIKFQNNIQIDLIGCRKEKYEYEGALPKITLSNIKNDLERRDFTINALAYD 129
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
I + + K I ++ +ED RI R ++ YG K D + S
Sbjct: 130 IVEDKILDFFNGMEDLRKG-KIIKIHNNSYMEDGTRIFRAIKYSIRYGFKIEDEKEIRES 188
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
I I + + + E ++ + Q
Sbjct: 189 ITKGTLKNISNDRIVSELYSLCTEENW-------------------------IEAIKQCY 223
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ + L I+L IL++ F+ + F +K +
Sbjct: 224 KYNLLDIDLNLLGLENILLDYSNIYVRILNVLYSIKGEHGQSIFIDNSFLDKDLRKPIDK 283
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFPL 365
K Y +I+ L + + F +V + + + +
Sbjct: 284 YLQNKEIYSLSLSNAKDNYEIYKILSKTYSFERVLLAWNLKFRYKVYNYEKNIRVIDLTM 343
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
G D+ K GI GK++G IL + K+ IN
Sbjct: 344 NGQDIKKLGIKEGKEIGLILEYMKKYKIN 372
>gi|300313567|ref|YP_003777659.1| tRNA nucleotidyltransferase [Herbaspirillum seropedicae SmR1]
gi|300076352|gb|ADJ65751.1| tRNA nucleotidyltransferase protein [Herbaspirillum seropedicae
SmR1]
Length = 410
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/346 (16%), Positives = 123/346 (35%), Gaps = 19/346 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ VGGAVRD L+ L V+D D + P++++ + P + +
Sbjct: 2 KTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLAL------GFRPVGKDF--PVFLHPH 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ T Y F + D RRD TINA+ D+ G ++D G
Sbjct: 54 TQEEYALARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGTLVDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKIL 200
D+ R + + +ED +RILR RF A + + + + + + + L
Sbjct: 114 ADIAARVFRHV---SDAFIEDPVRILRVARFAARFADFTVAPETNALMQRMVEQGEVDAL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER+W E+++ L + P + G + I ++ + + E +
Sbjct: 171 VPERVWQELSRGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHV 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
++ + + ++ + + + + ++ +
Sbjct: 231 MLVVDWAAAQGFTLPIRFAALMHDLGKG-TTPPEMWPRHHGHEARSERLAEQVCARLKVP 289
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
G+ +A + + +++ S ++KP +
Sbjct: 290 GECRDLALMTAREHGNVGRAFEMRPDTLVKFFSRCDAFRKPQRFID 335
>gi|253991026|ref|YP_003042382.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
gi|253782476|emb|CAQ85640.1| multifunctional cca protein [Photorhabdus asymbiotica]
Length = 408
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 64/345 (18%), Positives = 125/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+NL V++ D P+ ++ + K P + K
Sbjct: 2 RIYLVGGAVRDRLLNLPVKERDWVVVGGTPEELLSQGYQQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D LRRD TINA+ G+ +D G+
Sbjct: 54 THEEYALARTERKSSLGYTGFTCYAAPNVTLEDDLLRRDLTINAIAQTPDGEFVDPYHGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA----SIKAKKGLK 198
+DL NR ++ + ED LR+LR RF A + ++ L
Sbjct: 114 SDLNNRILRHV---SDAFSEDPLRVLRVARFAARFAHLGFTIAPETQALMSNMATNGELS 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
IL+ ER+W E K L +P + + G +F ++ + + E
Sbjct: 171 ILTPERVWKETEKALSTYSPQVFFQILRDCGALAVLFPEINNLFGVPAPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
+L+ ++ + ++ + + + + + + +
Sbjct: 231 HALMVLKVAAELTNEVDSRFAALCHDL--GKGLTPPEQWPHHYGHGPAGVKLVDQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ + W+KP
Sbjct: 289 RVPNSARDLAKLAANYHDLVHTVDQLRPKTLLKLFDAVDAWRKPQ 333
>gi|220933517|ref|YP_002512416.1| tRNA nucleotidyltransferase [Thioalkalivibrio sp. HL-EbGR7]
gi|254813701|sp|B8GUR8|CCA_THISH RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|219994827|gb|ACL71429.1| tRNA nucleotidyltransferase [Thioalkalivibrio sp. HL-EbGR7]
Length = 409
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 75/418 (17%), Positives = 137/418 (32%), Gaps = 65/418 (15%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L+ L V++ D +++ + + + P + +
Sbjct: 2 KTYLVGGAVRDELLGLPVRERDWVVVGATAAQMLDLGYRQVGRDFPVF--------LHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y V + + D LRRD TINA+ D+ G +ID G
Sbjct: 54 THEEHALARTERKTAPGYRGFVVHAEPDVTLEEDLLRRDLTINAMARDEAGGLIDPFNGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL R ++ + ED +RILR RF A + ++ +
Sbjct: 114 ADLEARLLRHV---SPAFAEDPVRILRVARFAARFAHLGFRVADETRALMRRMVAAGEVD 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL------------ 246
ER+W E+ + L +P + + G +F +++ +
Sbjct: 171 ALVPERVWQEMERALGEGSPATFFEVLRDCGALAVLFPEIERLFGVPQPPKYHPEIDTGV 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ Q D+ +RF L K + + E R + C+ +
Sbjct: 231 HTLMVLTQAARLSADATIRFAALTHDLGKGTTPADILPSHHGHEQRSVDLVHALCDRFRI 290
Query: 307 TLSIPE-------IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ--------- 350
+ + + + LK L + F+L
Sbjct: 291 PNAYRDLAVMVARWHGYSHRALELRPDTVLKALEGLDAFRRPERFEPFLLACEADYRGRT 350
Query: 351 --------VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN--------ILVHCKQEW 392
+ ++ D+V G+ GK +G L K EW
Sbjct: 351 GFEDRPYPQADYLRAAHARCLAISAKDLVNEGLT-GKAIGEALHARRVQALKQLKAEW 407
>gi|84625338|ref|YP_452710.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|122879299|ref|YP_202539.6| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Xanthomonas oryzae pv. oryzae KACC10331]
gi|123520950|sp|Q2NZ41|CCA_XANOM RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|84369278|dbj|BAE70436.1| tRNA nucleotidyltransferase [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 410
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 66/406 (16%), Positives = 128/406 (31%), Gaps = 57/406 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD+L+ D D D+ +K P + + +
Sbjct: 2 KIYLVGGAVRDALLGQPAGDRDWVVVG-ADQ--ARMEAQGFK--PVGKDF--PVFLHPRS 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQG-KVIDYVGGL 142
+ R++ + Y V D + D LRRDFTINA+ D+ + D G
Sbjct: 55 GEEYALARTERKSGRGYRGFVVDADPLVTLEEDLLRRDFTINAIARDEDTGEFFDPYNGA 114
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ R ++ +G A +ED +R+LR RF A A++ +
Sbjct: 115 RDLQARVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTIAPETAALMREMAASGELD 171
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E+ + L P + +++ + I ++ + E
Sbjct: 172 SLVPERVWQELRRALTCAQPSAFLRTLHDTDGLRAILPEIDALYGVPQRAQFHPEVDTGI 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + I+ D + + + + + +
Sbjct: 232 HQEMVSDMAARIAPGDALVGFAALTHDLGKALTPPEQWPRHIMHEQRGVAPLQALCERLK 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ D +A + L+ + L + ++L +++P
Sbjct: 292 VPQDYRQLAVIACREHLNVHRLPELRDRTVHELLVRCDAFRRPERIAQLALVCEADKRGR 351
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVH 387
+ D+ G+ G ++G L
Sbjct: 352 LGSEEAAYPQGAELKRLHAAASAINARDLAADGLQ-GPQIGEALTK 396
>gi|242075570|ref|XP_002447721.1| hypothetical protein SORBIDRAFT_06g014480 [Sorghum bicolor]
gi|241938904|gb|EES12049.1| hypothetical protein SORBIDRAFT_06g014480 [Sorghum bicolor]
Length = 542
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/285 (19%), Positives = 100/285 (35%), Gaps = 17/285 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ N+L L +VGG VRD +M + +D DI TT +V FS +
Sbjct: 95 EAWNVLHRLRSRGYDVYLVGGCVRDLIMKKTPKDFDIITTADLRQVKDTFS---GSAVIV 151
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--------FTRDWKADSLRRDFTIN 125
+ + ++++ + + RDFTIN
Sbjct: 152 GRRFPICHVHENNSIVEVSSFYTSARGSSGSQIYNSKSQNCSKNDFVRWKNCQGRDFTIN 211
Query: 126 ALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
L K+ DY+GG+ D++ ++ + A ED RILR R A G +
Sbjct: 212 GLMFNPYSEKIYDYLGGIEDIKKAKVRTVIPAGTSFQEDCARILRAIRIAARLGF-SFPK 270
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-DVQEISL 243
+ + L RI E+N +L + ++ ++ G+ + + S
Sbjct: 271 ETAYYVRTLAYSVARLDKGRILLEMNYMLAYGSAEASLRLLWRFGLLEHLLPFQAAYFSS 330
Query: 244 DQLSQVIEAEQ---VFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + + V K+D+ L S+L+ +
Sbjct: 331 TRFKRKDKGTNMLLVLFSKLDNFLAPNRPCHNSLWISLLAFHEAL 375
>gi|209363657|ref|YP_001423491.2| tRNA nucleotidyltransferase [Coxiella burnetii Dugway 5J108-111]
gi|212217801|ref|YP_002304588.1| tRNA nucleotidyltransferase [Coxiella burnetii CbuK_Q154]
gi|207081590|gb|ABS78203.2| tRNA nucleotidyltransferase [Coxiella burnetii Dugway 5J108-111]
gi|212012063|gb|ACJ19443.1| tRNA nucleotidyltransferase [Coxiella burnetii CbuK_Q154]
Length = 381
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 74/378 (19%), Positives = 138/378 (36%), Gaps = 35/378 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L V++ D P+ + P + + +
Sbjct: 22 KVYLVGGAVRDQLLGLPVKEKDWVVVGATPEEMTAR------GFKPVGKEF--PVFLHPE 73
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ Y F + D RRD TINA+ +G++ID GG
Sbjct: 74 THEEYALARTERKVAKGYKGFTFYAAPDVSLEEDLKRRDLTINAIAETPEGQLIDPYGGQ 133
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKIL 200
DL+N+ ++ + ED +R+LR R + + +I D L K + L
Sbjct: 134 EDLKNKVLRHV---SVAFQEDPVRVLRLARLATKFPDFSIHPDTLELMKKMVCAGEIDAL 190
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER+W E+N+ L + P + G +F +++ + + V +
Sbjct: 191 VPERVWQELNRALGNEKPTRFFTVLNQCGALAILFPEIKMEG----KGMAALQSVTDKTP 246
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
L+RF L S + I +A ++ +P E I + L+ + L
Sbjct: 247 SPLIRFATLQSDLPPEIIQKLAGRYRVPNEYADLAILVARFGSDYVNLNRMDETSLLNFL 306
Query: 321 GDKVMIAKLK-----IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375
+ + + IF ++ T I +++ + + + +
Sbjct: 307 LKTDALRRQERFDQFIFTCDLISSTTSSQPKKIKEIIKAVKSVDIKP-------LQEKQL 359
Query: 376 PPGKKVGNILVHCKQEWI 393
G+ L + E I
Sbjct: 360 K-GEAFAKALEKLRLEAI 376
>gi|325917731|ref|ZP_08179919.1| tRNA nucleotidyltransferase/poly(A) polymerase [Xanthomonas
vesicatoria ATCC 35937]
gi|325536060|gb|EGD07868.1| tRNA nucleotidyltransferase/poly(A) polymerase [Xanthomonas
vesicatoria ATCC 35937]
Length = 422
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 65/409 (15%), Positives = 134/409 (32%), Gaps = 63/409 (15%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD+L+ + D D P + + +
Sbjct: 2 KIYLVGGAVRDALLGQAAGDRDWVVVG-----ADQAQMQAQGFKPVGKDF--PVFLHPRS 54
Query: 88 YFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGL 142
+ R++ + Y + + D LRRDFTINA+ D+ ID GG
Sbjct: 55 GEEYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAMARDEDSGTVIDPYGGA 114
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ R ++ +G A +ED +R+LR RF A A++ +
Sbjct: 115 RDLQARVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTIAPDTAALMREMAASGELD 171
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS---------------- 242
ER+W E+ + L P + +++ + I ++ +
Sbjct: 172 SLVPERVWQELRRALTCAQPSAFLRTLHDADALRVILPELDALYGVPQRAEFHPEVDTGI 231
Query: 243 -----------------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
L + + D R ++ + + ++ ++
Sbjct: 232 HQEMVSDMAARLAPGDALIGFAALSHDLGKALTPPDQWPR-HLMHEQRGVAPLQALCERL 290
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIK-------KLFYLYGDKVMIAKLKIFLALHYN 338
+P++ R+ ++ + N L+ + + + + + A
Sbjct: 291 KVPQDYRHLAVTACREHLNIHRLAELRHRTVHELLVRCDAFRRPERIAQLALVCEADKRG 350
Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
L +D + +++ + D+ G+ G ++G L
Sbjct: 351 RLGSEDAAYPQG--AELKRLHAAALAINARDLAAEGLH-GPQIGEALTK 396
>gi|224119782|ref|XP_002318161.1| predicted protein [Populus trichocarpa]
gi|222858834|gb|EEE96381.1| predicted protein [Populus trichocarpa]
Length = 515
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 56/290 (19%), Positives = 99/290 (34%), Gaps = 19/290 (6%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L+ L K + +VGG VRD ++ +D DI T+ V+R FS
Sbjct: 74 LISMPTKKVLNGLKKNGYEVYLVGGCVRDLILKRIPKDFDIITSAELKEVVRTFSHCEI- 132
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---------KADSLRR 120
+ + ++++ + + + L+R
Sbjct: 133 ---VGKWFPICHVHVGDTIVEVSSFSTTGRKFKVDLRNDIICPIDCDEKDYVRWKNCLQR 189
Query: 121 DFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DFTIN L D ++ DY+GGL D++ ++ + A ED RILR R A G
Sbjct: 190 DFTINGLMFDPYKRIVYDYMGGLEDIKKAKVRTVIPAGISFQEDCARILRAVRIAARLGF 249
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL--- 236
+ + L L RI E+N +L + ++ ++ G+ + +
Sbjct: 250 -RFTRETAHFVKNLSRLLLRLDKPRIMMEMNYMLAYGSAEASLRILWKFGLLELLLPIQA 308
Query: 237 -DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + +D LL IL+ K
Sbjct: 309 AYFVRDGFKRRDKRSNMLLCLFSNLDKLLAPDRPCHSSLWVGILAFHKAL 358
>gi|302391954|ref|YP_003827774.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acetohalobium arabaticum DSM 5501]
gi|302204031|gb|ADL12709.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acetohalobium arabaticum DSM 5501]
Length = 469
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 91/470 (19%), Positives = 146/470 (31%), Gaps = 86/470 (18%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
L ++ +LN+ K +VGG +RD L+ ++DID+A + R F+
Sbjct: 2 EHLNYLVEILNQHNIKGYLVGGIIRDYLLEREIKDIDVAINDKVRIIARKFADLVTGGF- 60
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
++ KK T R + D L RDFTINAL +D
Sbjct: 61 ---------VVLDKKR---DTYRVVTEELNYDLAPIIGDSIYEDLLGRDFTINALASDID 108
Query: 133 -----------GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
G++ID GG +DL+ +TI+ I ED LR+LR RF A
Sbjct: 109 GIDLDKDRGLSGEIIDPTGGRSDLKEKTIRAI--NKETFKEDPLRLLRGVRFRAELNFTI 166
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA----------------IVHM 225
+ ++ ++ S + K N I M
Sbjct: 167 NSKTEELMQKDSQLITEVASERIKEELLKIAAADKAADNLEYLEKKSGLLSYLIPEIKMM 226
Query: 226 YNGGIFKEIFLDVQEIS------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279
G K DV S L++L + + + LL+ L K
Sbjct: 227 KKIGKCKYHKEDVWTHSLYTVEQLEELLRDVFWSKQVSNDQIPLLKLAALFHDIGKLWTE 286
Query: 280 SM---------------------AKKFSLPREIRYFLISFFNCNFNQ------KTLSIPE 312
M ++ + R ++ + L+
Sbjct: 287 EMIDGEVHFYGHHKEGAKKIVPILRQLTFSRRKIKYIKRLIRYHMRPLSLYSADNLTQKG 346
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII---------HWKKPLF 363
+ F V L + L ++ I L I +
Sbjct: 347 KYRFFRAAKGVVGDVCLLAAADILATKLWNERREEIADNLDFIKELISDTEKMKKRTSKL 406
Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
LTG DV++ I G +VG IL ++ + E + L+KL
Sbjct: 407 LLTGYDVMELLNIEEGPQVGRILDKIREAQAQGKIENRTEAV-EYLKKLK 455
>gi|212211856|ref|YP_002302792.1| tRNA nucleotidyltransferase [Coxiella burnetii CbuG_Q212]
gi|215919265|ref|NP_820806.2| multifunctional CCA protein [Coxiella burnetii RSA 493]
gi|206584149|gb|AAO91320.2| tRNA nucleotidyltransferase [Coxiella burnetii RSA 493]
gi|212010266|gb|ACJ17647.1| tRNA nucleotidyltransferase [Coxiella burnetii CbuG_Q212]
Length = 381
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 75/378 (19%), Positives = 138/378 (36%), Gaps = 35/378 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L V++ D P+ + P + + +
Sbjct: 22 KVYLVGGAVRDQLLGLPVKEKDWVVVGATPEEMTAR------GFKPVGKEF--PVFLHPE 73
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ Y F + D RRD TINA+ +G++ID GG
Sbjct: 74 THEEYALARTERKVAKGYKGFTFYAAPDVSLEEDLKRRDLTINAIAETPEGQLIDPYGGQ 133
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKIL 200
DL+N+ ++ + ED +R+LR R + + +I D L K + L
Sbjct: 134 EDLKNKVLRHV---SVAFQEDPVRVLRLARLATKFPDFSIHPDTLELMKKMVCAGEIDAL 190
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ERIW E+N+ L + P + G +F +++ + + V +
Sbjct: 191 VPERIWQELNRALGNEKPTRFFTVLNQCGALAILFPEIKMEG----KGMAALQSVTDKTP 246
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
L+RF L S + I +A ++ +P E I + L+ + L
Sbjct: 247 SPLIRFATLQSDLPPEIIQKLAGRYRVPNEYADLAILVARFGSDYVNLNRMDETSLLNFL 306
Query: 321 GDKVMIAKLK-----IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375
+ + + IF ++ T I +++ + + + +
Sbjct: 307 LKTDALRRQERFDQFIFTCDLISSTTSSQPKKIKEIIKAVKSVDIKP-------LQEKQL 359
Query: 376 PPGKKVGNILVHCKQEWI 393
G+ L + E I
Sbjct: 360 K-GEAFAKALEKLRLEAI 376
>gi|330448769|ref|ZP_08312416.1| tRNA nucleotidyltransferase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492960|dbj|GAA06913.1| tRNA nucleotidyltransferase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 411
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 58/344 (16%), Positives = 118/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD+L+ L+V D D P+ ++ + P + K
Sbjct: 2 QTYLVGGAVRDTLLGLTVTDKDWVVVGTTPEAMLAAGFEQIGSDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y V + D LRRD TINA+ G++ID G
Sbjct: 54 TKQEHALARTERKSGHGYTGFVCYSAPDVTLEQDLLRRDLTINAIAQAPNGELIDPYHGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
D+ ++ ++ + ED LR+LR RF A + ++ + +
Sbjct: 114 QDITDKVLRHV---SPAFAEDPLRVLRVARFAARFAHLGFTVAPETMALMQEMVVSGELA 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L + +P + + G + ++ + + E
Sbjct: 171 SLTPERVWKEWEKSLSSDDPQMFLTVLRQCGALAIVMPEIDALFGVPQPEKWHPEIDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + + I + +
Sbjct: 231 HTLLVAKKAAELSADKTIRFAAQVHDLGKALSPK-DDLPHHKMHCRDGIKPIKALCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L ++ +++ I W+KP
Sbjct: 290 VPNEYRDLALLVCEQHTKIHHAEEMRADTFIKIFDQIDAWRKPE 333
>gi|88858395|ref|ZP_01133037.1| tRNA nucleotidyltransferase [Pseudoalteromonas tunicata D2]
gi|88820012|gb|EAR29825.1| tRNA nucleotidyltransferase [Pseudoalteromonas tunicata D2]
Length = 369
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 75/376 (19%), Positives = 128/376 (34%), Gaps = 31/376 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+L+ V + D ++++ K P + K
Sbjct: 2 QIYLVGGAVRDTLLGRPVLERDFVVVGATAEQMLSQGYTQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D +RRD T+NA+ G++ID G
Sbjct: 54 TKEEYALARTERKQGQGYTGFICDFNPNVTLEEDLIRRDLTVNAIAQAPDGQLIDPYNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
+DL NR ++ + ED LRILR RF A Y ++ K
Sbjct: 114 DDLNNRILRHV---SGAFAEDPLRILRVARFAARYNYLGFTVAPETITLMQNMVTQGELK 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ-----LSQVIEAE 253
L++ER+W E K L + + +E+ + ++ Q Q A+
Sbjct: 171 TLTAERVWIEWEKSLNDGAFATFLSVLQQVNALRELCPSLAQVWSTQTACDLQQQHDYAK 230
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313
+ L + L+ Q + L + K L FN F Q L E+
Sbjct: 231 HHQLATPEILFCQVALLFNQPDLAKLKLDLKLPNSFVELAQLSIRFNPLFMQPQLCASEM 290
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373
F +L LA+ +L + + + K + +K
Sbjct: 291 LACFNALDLWRRPERLTALLAVFECHLGEKSKHQLT-----LESAAKQASSINAQTFIKQ 345
Query: 374 GIPPGKKVGNILVHCK 389
GI G + + +
Sbjct: 346 GIT-GAAIKPAMDQAR 360
>gi|293394301|ref|ZP_06638601.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582]
gi|291423279|gb|EFE96508.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582]
Length = 416
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 58/344 (16%), Positives = 123/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L+ + V D D P+ ++ + + + P +
Sbjct: 4 KTYLVGGAVRDRLLKIPVFDHDWVVVGATPEELLALGYQQVGRDFPVF--------LNPN 55
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ G + D RRD TINA+ G+++D G+
Sbjct: 56 THEEYALARTERKSGQGYTGFVCHAAPDVTLEEDLQRRDLTINAIAQTTDGELVDPYHGV 115
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
+DL R ++ + ED LR+LR RF A + A++ +
Sbjct: 116 DDLNARVLRHV---SAAFGEDPLRVLRVARFAARFAHLGFTIAPETAALMRQMTDSGELS 172
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
++ER+W E K L++ NP + + + +F ++ + + E
Sbjct: 173 ALTAERVWKETEKALQSDNPQVYFQVLRDCHALQVLFPEIDALFGVPAPEKWHPEIDTGV 232
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++ + ++ + + + + + ++ +
Sbjct: 233 HTLMTLAIAARLTPEIDVRFAALCHDLGKGLTPKQYW-PHHHGHGPAGVRLVEQLCQRLR 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ ++KL + + +L++ I W+KP
Sbjct: 292 VPNPIRDLSKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPQ 335
>gi|171056797|ref|YP_001789146.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Leptothrix cholodnii SP-6]
gi|226702071|sp|B1Y634|CCA_LEPCP RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|170774242|gb|ACB32381.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Leptothrix cholodnii SP-6]
Length = 419
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 65/345 (18%), Positives = 124/345 (35%), Gaps = 25/345 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ V D D P++++ +P + + +
Sbjct: 2 RCLLVGGAVRDQLLGRPVGDRDWVVVGATPEQMVAA------GYLPVGRDF--PVFLHPR 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y VF D RRD TINA+ D+ G +ID GG
Sbjct: 54 THEEYALARTERKTAPGYHGFVFHTGADVSLDDDLARRDLTINAMALDEAGTLIDPWGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKIL 200
DL ++ ++ +G A ED +RILR RF A G+ ++ + L + + + L
Sbjct: 114 RDLAHKCLRHVGAA---FAEDPVRILRLARFAARLGDFSVAPETLALCRRMVEAGEVDAL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER+W E+++ L P + + G + +V+ + E +
Sbjct: 171 VPERVWQELSRGLMEARPSRMFEVLRDCGALARLLPEVERLFGVPQRADYHPEVDTGVHL 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+L + + S + +
Sbjct: 231 MMVLDTAAQRGVSLPVRY----ACLGHDLGKGTTPAHILPRHIGHEGRSAALLAPMSARL 286
Query: 321 GDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKPL 362
+L +A ++N+ + D ++++ W++P
Sbjct: 287 KVPAACHELADLVAREHSNVHGSGNFDAAALVRLFDRCDAWRRPE 331
>gi|116071594|ref|ZP_01468862.1| possible polyA polymerase [Synechococcus sp. BL107]
gi|116065217|gb|EAU70975.1| possible polyA polymerase [Synechococcus sp. BL107]
Length = 404
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 66/399 (16%), Positives = 129/399 (32%), Gaps = 38/399 (9%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLS-------VQDIDIATTILP----DRVMRIFSKTRY 68
+ + G + +VGGAVRD L++ V D+D P ++R + R
Sbjct: 17 AAIGAGVKRLAMVGGAVRDGLLHERYGRAWSGVPDLDWVLEGDPMRLAAELLRRCGEQRV 76
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + ++GT+ + D R + VV +D +RRDFTINA+
Sbjct: 77 MALQSYGAFGTVALKLDGVALDFAMARRESYPMPAENPVVEPGSLDSDLVRRDFTINAMA 136
Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK------- 180
D G++ID G DL + F+ D +D R++R R+ A G
Sbjct: 137 QDLLSGQLIDPHRGQQDLAAGRLLFLHDESVS--DDPTRVIRACRYAARLGFVLSPEAKQ 194
Query: 181 --NIDSDGLVASIKAKKGLKILSS---ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
S R+ E+++L E + A+ + +
Sbjct: 195 QVTATVRRWPWSWHWYDAPDKAPPALANRLRMELDRLFEVEPWAVALDCLEEWKAMALLD 254
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+Q + + ++ L L + D +++ + L
Sbjct: 255 PSLQN------DRGRNRRIAWAQRLALPLLPAWLAAAPDPEAVARRLGVPGQQQRWLQQL 308
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
+ + + + ++ + + + +L
Sbjct: 309 VRLRDWLLSADAPDVHAAPDVWTAALESQGWMPETVAFMVCLQ------PPQWKPLLRWW 362
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
W+ P + D++ G G +GN L + E +
Sbjct: 363 GRWRHLKSPRSARDLIADGWSSGPALGNELKRLRLEALK 401
>gi|332285799|ref|YP_004417710.1| tRNA CCA-pyrophosphorylase [Pusillimonas sp. T7-7]
gi|330429752|gb|AEC21086.1| tRNA CCA-pyrophosphorylase [Pusillimonas sp. T7-7]
Length = 391
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 69/348 (19%), Positives = 123/348 (35%), Gaps = 21/348 (6%)
Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTI 80
L IVGGAVRD+L+ L D D P+++ IP +
Sbjct: 26 LAIAGLDIYIVGGAVRDALLGLPAGDRDWVVVGATPEQMSSR------GFIPVGGDF--P 77
Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVI 136
+ + + R++ + Y F +AD RRD TINA+ G++I
Sbjct: 78 VFLHPRSKEEYALARTERKSGRGYKGFTFYTGADVTLEADLQRRDLTINAIAQAPDGRLI 137
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK--AK 194
D +GG DL+ R ++ +G A +ED +R+LR RF A + E +I + L + +
Sbjct: 138 DPLGGQRDLQQRILRHVGHA---FIEDPVRLLRLARFAARFHEFSIAPETLALARQLVQD 194
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W E+ K L + + G + + + LS +
Sbjct: 195 GEVDALVPERVWREVAKGLMVPQAGRMFQVLADTGALSRVLPGL-CWNEQPLSAELVCAA 253
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ + + +S + + R I + + ++ + I+
Sbjct: 254 HNNLSLAARFALVCRLSDDPQSVARHVKAPGECQDYARLLPIMLDHVDADEAPAWLELIE 313
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L A + Q + L I
Sbjct: 314 RCDAFRKPDRFLALL--GAAQCVKEIDEQAWQARIGALRSIDAGAIAK 359
>gi|126665733|ref|ZP_01736714.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Marinobacter sp. ELB17]
gi|126629667|gb|EBA00284.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Marinobacter sp. ELB17]
Length = 386
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 64/385 (16%), Positives = 127/385 (32%), Gaps = 40/385 (10%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD L+ L V+D D P+ ++ + P +
Sbjct: 7 IYLVGGAVRDQLLGLPVKDRDWVVVGATPETMLTQGFRQVGADFPVF--------LHPHT 58
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ + R++ Y + D RRD T+NA+ + G++ID GG
Sbjct: 59 HEEYALARTERKQGRGYHGFTVYSAPDVTLEEDLKRRDLTVNAMAQAEGGEIIDPFGGQQ 118
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK----I 199
DL++R ++ + ED LRILR RF A + + +
Sbjct: 119 DLQDRLLRHV---SEAFAEDPLRILRTARFAARFAPQGFAVHPHTLQLMQAMTDAGEVRH 175
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS-QVIEAEQVFEW 258
L ER+W E+ + L +P+ +++ G E+ + + Q + ++
Sbjct: 176 LVPERVWQELQRALHETSPVTFFEVLHSCGALIELLPEFAAQPVRQQALNALQQLHQNLP 235
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR--------------YFLISFFNCNFN 304
++ R L+ + P+ + + N
Sbjct: 236 GANTAQRIAALLLPLSSAQANNRVTLLKAPKVCQELATLACTLRCSSCMNITHSQNELAE 295
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
Q ++ + + L++ L L + Q+ +
Sbjct: 296 QLLETLNAADAWRRPERLQEALQLLRVTLPLQNGLDLPLQQIGLQQLAESLQAAAG---- 351
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCK 389
+ ++ G G ++G + C+
Sbjct: 352 VHAKTLLAQGYR-GPELGQAMNQCR 375
>gi|325266509|ref|ZP_08133186.1| multifunctional CCA protein [Kingella denitrificans ATCC 33394]
gi|324981952|gb|EGC17587.1| multifunctional CCA protein [Kingella denitrificans ATCC 33394]
Length = 410
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 63/341 (18%), Positives = 119/341 (34%), Gaps = 17/341 (4%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+L+NL V+D D ++++ P + + +
Sbjct: 2 EIYLVGGAVRDALLNLPVKDRDWVVVGATAEQLLA------QGYQPVGKDF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y D + D RRD TINA+ DQ G++ID GG
Sbjct: 54 SHEEYALARTERKTGRGYTAFQVFADPNVTLEEDLQRRDLTINAMAQDQDGRIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL+ ++ + ED +RILR RF A YG + + + G
Sbjct: 114 QDLQRGILRHV---SPAFAEDPVRILRVARFAARYGFSVAEETMRLMRGMVENGEAHALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L + P + + G + +V + E
Sbjct: 171 AERVWQELAKGLMERQPRRMVEVLRECGALAVLLPEVDALFGVPQRADYHPEIDSGEHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+L+ + + ++ L + +
Sbjct: 231 LVLQRAADMDLPLAERYAALLHDLGKALTPADILPKHIGHDERGIAPIRAVNARWRVPKQ 290
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + F + + I+++L + +++P
Sbjct: 291 CAELAELVCAFHIRFHQVGQIKSAGKIVKLLKECDAFRRPE 331
>gi|237751300|ref|ZP_04581780.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Helicobacter bilis ATCC 43879]
gi|229372666|gb|EEO23057.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Helicobacter bilis ATCC 43879]
Length = 566
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS--KTRYKVIP 72
+I+IL +L ++ IVGG VRDSL+ LS +D DI + P + +IF ++VIP
Sbjct: 14 VIDILKILESHGFEAYIVGGCVRDSLLGLSPKDWDITSNAEPMQTRQIFDLYDKDFEVIP 73
Query: 73 TSISYGTIKIICRKKYF--DITTLRSD-LITDGRYAKVVFT-RDWKADSLRRDFTINALY 128
+ YGT+ I +K+ +ITT R + DGR + + + + D RRDF+INAL
Sbjct: 74 IGLKYGTLGIRDKKRGNLVEITTYRFEGEYKDGRRPECIQFAKTLQEDLSRRDFSINALA 133
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAH 157
K I + + ++ +
Sbjct: 134 CRMLHKDIKTEEHVILWADAGLRVQNSKN 162
Score = 46.4 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 56/331 (16%), Positives = 104/331 (31%), Gaps = 43/331 (12%)
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNIDS 184
A ++ ++ DY G+ L+ R I +G+A R LED LRI+R RF + + S
Sbjct: 234 ATHSSINMQLFDYHNGIKHLQERKIACVGNAQERFLEDSLRIMRAIRFASILPFSFQLSS 293
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--S 242
A + L ++++ERI E KLL + + + F L + S
Sbjct: 294 QTKEAVFLLTQKLLLIANERIQIEFTKLLCGQYAHRILSIYKSVFFFILPPLKILNAMQS 353
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK---------KSILSMAKKFSLPREIRY 293
+ A + ++ L + K ++ K+ +
Sbjct: 354 NHNFETLRIAPKNIVLRLALLFCPLPYAKDIYKNREKLQKYLCDYQAICKQLHFDNKTIQ 413
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH----------------- 336
+ N + + K + I + + L+
Sbjct: 414 RSQTLLQLLCNTEIFTAQNSKIALKYLLSQHDIEIISQLILLYVVLQKTHEALGESSPKD 473
Query: 337 -----YNNLTHQDTCFILQVLSDI----IHWKKPLFPLTGDDV----VKYGIP-PGKKVG 382
+ I + L++I +K + G+ + GI GK++G
Sbjct: 474 SILQETPPYNKEQLYAITKDLNEIIINKECYKLSQLSINGNALQNIAKSMGISLQGKQIG 533
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+L I + L R IA
Sbjct: 534 ILLTKLLYAVIEEEIPNTFYSLESRARFYIA 564
>gi|254429964|ref|ZP_05043671.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Alcanivorax sp. DG881]
gi|196196133|gb|EDX91092.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Alcanivorax sp. DG881]
Length = 410
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+ L V + D P+ + ++ P + +
Sbjct: 2 KVYLVGGAVRDSLLGLPVTEKDWVVVGATPEEM----EANGFR--PVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFT----RDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D +RRD TINA+ + G+V+D G
Sbjct: 54 TQEEYALARTERKSGHGYGGFTFHAASDVSLEEDLIRRDLTINAMARSEGGEVVDPFHGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+ R ++ + ED LR+LR RF A Y + + L
Sbjct: 114 IDLKARLLRHV---SPAFAEDPLRVLRVARFAARYHWLGFRVADDTLTLMRQLSDSGELD 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER+W E ++ L P ++ G +++F ++ + + E
Sbjct: 171 YLVPERVWKETSRALMEPAPQVFFQVLHVCGALEKLFPELAALDGVPQPEAHHPEVDTLV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L + + + + LS + K
Sbjct: 231 HQWLCLEMAAKLKLPLTARYAVLCHDLGKAKTPQAEWPRHIAHEIRSARLS-RTLSKRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D A L H + + ++ + ++P
Sbjct: 290 VPRDAADTAALVAEYHTHCHRALELKPQTVWKLFKALDVIRRPE 333
>gi|253698789|ref|YP_003019978.1| poly(A) polymerase [Geobacter sp. M21]
gi|251773639|gb|ACT16220.1| poly(A) polymerase [Geobacter sp. M21]
Length = 482
Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+ + IL L + +VGG VRD L+ +D D+ T P ++ ++F R
Sbjct: 23 SPNAVKILYKLKEQGFTGYLVGGGVRDLLLGREPKDFDVVTDATPAQLKKMFRNCRL--- 79
Query: 72 PTSISYGTIKIICRKKYFDITTLR 95
+ + + ++ T R
Sbjct: 80 -IGRRFRLAHLHFHDEIIEVATFR 102
>gi|89899891|ref|YP_522362.1| metal dependent phosphohydrolase [Rhodoferax ferrireducens T118]
gi|89344628|gb|ABD68831.1| metal dependent phosphohydrolase [Rhodoferax ferrireducens T118]
Length = 433
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 61/384 (15%), Positives = 118/384 (30%), Gaps = 46/384 (11%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+LM L V D D PD ++ +P + + +
Sbjct: 2 QIYLVGGAVRDALMGLPVTDRDWVVVGATPDELVA------QGFVPVGKDF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R + T Y + D RRD TIN++ D + +
Sbjct: 54 THEEYALARLERKTAPGYHGFAVHAAPDVTLEEDLARRDLTINSIAIDADYIRAKGLFDI 113
Query: 143 NDLRNRTIKFIGDAHHR--------------ILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ + R ED +RILR R A + + ++ + L
Sbjct: 114 KSSETAPAALVDPFNGRQDIADKIFRHVSAAFCEDPVRILRLARLAARFPDFSVAPETLQ 173
Query: 189 ASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
++ + L +ER+W E+++ L P + G I +V +
Sbjct: 174 LMLEMVHSGEVDHLVAERVWQELSRGLMEATPSRMFEVLRECGALARILPEVDRLWGVPQ 233
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
E + +L + + + + +
Sbjct: 234 RADYHPEIDTGAHLALVLDMAARLGAD----LPVRLACLTHDLGKGTTPADILPRHLGHE 289
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPLF 363
S +K L +L +A + N+ D ++++L ++KP
Sbjct: 290 QRSAQLLKGLAERLRLPTDCRELADVVAREHGNIHRSGNLDAAALVRLLERCDAFRKPQR 349
Query: 364 PLTGDDVVK--------YGIPPGK 379
G ++ G+
Sbjct: 350 L--GQILLACECDARGRLGLAESP 371
>gi|28198511|ref|NP_778825.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Xylella
fastidiosa Temecula1]
gi|182681188|ref|YP_001829348.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Xylella
fastidiosa M23]
gi|73619907|sp|Q87DS9|CCA_XYLFT RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702094|sp|B2I9I0|CCA_XYLF2 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|28056595|gb|AAO28474.1| tRNA nucleotidyl transferase [Xylella fastidiosa Temecula1]
gi|182631298|gb|ACB92074.1| Polynucleotide adenylyltransferase region [Xylella fastidiosa M23]
gi|307579633|gb|ADN63602.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Xylella
fastidiosa subsp. fastidiosa GB514]
Length = 416
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 59/414 (14%), Positives = 120/414 (28%), Gaps = 57/414 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
KS +VGGAVRD+L+ D D P + + P + + K
Sbjct: 2 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMKSL------GFKPVGRDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y T + D RRDFTINA+ DQ + G
Sbjct: 54 TGEEFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIARDQTNGTLIDPYGG 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
+ + + ED LR+LR RF A ++ +
Sbjct: 114 VNDLEQRVLR--HISPAFAEDPLRVLRAARFMARLAPLGFSIAPETLAMMRQMAANGELN 171
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ERIW E+++ L P + + + + ++ + E
Sbjct: 172 SLIPERIWKELSRSLTYTQPAAFLHTLRTVNALEVVLPELNALYGVPQHADYHPEIDTGL 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + ++ D + + + ++ +
Sbjct: 232 HQELVSDIAAKLAPGDMLIGFAALCHDLGKALTPRATWPHHPMHEQRGMAPTQQLSERLK 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ + +A + L+ + L+ + ++L +++P
Sbjct: 292 VPRNYQQLALIACREHLNVHRLSKLHDNTVYELLQRCDAFRRPERIAQLAIVCEADYRGR 351
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
+ D+ + + G ++G L + I+S
Sbjct: 352 YGHEDANYPQGQHLCRLHAAALAINARDLNRQDLH-GTQIGEALAQARIRAISS 404
>gi|71274846|ref|ZP_00651134.1| Polynucleotide adenylyltransferase [Xylella fastidiosa Dixon]
gi|71901447|ref|ZP_00683536.1| Polynucleotide adenylyltransferase [Xylella fastidiosa Ann-1]
gi|170729907|ref|YP_001775340.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Xylella
fastidiosa M12]
gi|226702095|sp|B0U6J4|CCA_XYLFM RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|71164578|gb|EAO14292.1| Polynucleotide adenylyltransferase [Xylella fastidiosa Dixon]
gi|71728786|gb|EAO30928.1| Polynucleotide adenylyltransferase [Xylella fastidiosa Ann-1]
gi|167964700|gb|ACA11710.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Xylella fastidiosa
M12]
Length = 416
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 60/414 (14%), Positives = 120/414 (28%), Gaps = 57/414 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
KS +VGGAVRD+L+ D D P + + P + + K
Sbjct: 2 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMKSL------GFKPVGRDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y T + D RRDFTINA+ DQ + G
Sbjct: 54 TGEEFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIARDQTNSTLIDPYGG 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
+ + + ED LR+LR RF A ++ +
Sbjct: 114 VNDLEQRVLR--HISPAFAEDPLRVLRAARFMARLAPLGFSIAPETLAMMRQMVANGELN 171
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ERIW E+++ L P + + + + ++ + E
Sbjct: 172 SLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPELNALYGVPQHADYHPEIDTGL 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + ++ D + + + ++ +
Sbjct: 232 HQELVSDIAAKLAPGDMLIGFAALCHDLGKALTPRATWPHHPMHEQRGMAPTQQLSERLK 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ D +A + L+ + L+ + ++L +++P
Sbjct: 292 VPRDYQQLALIACREHLNVHRLSKLHDHTVYELLQRCDAFRRPERIAQLAIVCEADYRGR 351
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
+ D+ + + G ++G L + I+S
Sbjct: 352 YGHEDANYPQGQHLCRLHAAALAVNARDLNRQDLH-GTQIGEALAQARIRAISS 404
>gi|90411906|ref|ZP_01219914.1| putative tRNA nucleotidyltransferase [Photobacterium profundum
3TCK]
gi|90327164|gb|EAS43536.1| putative tRNA nucleotidyltransferase [Photobacterium profundum
3TCK]
Length = 411
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 118/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD+L+ L V D D P++++ + P + K
Sbjct: 2 QTYLVGGAVRDALLGLKVVDKDWMVVGATPEQMLDQGYEQVGSDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D +RRD TINA+ G++ID G
Sbjct: 54 TKQEYALARTERKSGKGYTGFICYSAPDVTLEQDLMRRDLTINAIAQKNDGRLIDPYNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL N+ ++ + +ED LR+LR RF A + ++ + +
Sbjct: 114 QDLDNKILRHV---SPAFVEDPLRVLRVARFSARFAHLGFTIAPETIALMQEMVVAGELE 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L +NP + + G K + ++ + E
Sbjct: 171 ALTPERVWKEWEKSLSTENPEVFLTVLRQCGALKVVMPEIDALFGVPQPAQWHPEIDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + + I + +
Sbjct: 231 HTLMVAKQAAELSPNKVIRFAAQIHDLGKALSPK-DDLPSHKMHCKDGLKPIKALCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D A + ++ + +L I W+KP
Sbjct: 290 VPNDYRDTALMVCAQHTKIHHANEMRPATFINILDQIDSWRKPE 333
>gi|58428117|gb|AAW77154.1| tRNA nucleotidyltransferase [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 713
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 66/406 (16%), Positives = 128/406 (31%), Gaps = 57/406 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD+L+ D D D+ +K P + + +
Sbjct: 305 KIYLVGGAVRDALLGQPAGDRDWVVVG-ADQ--ARMEAQGFK--PVGKDF--PVFLHPRS 357
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQG-KVIDYVGGL 142
+ R++ + Y V D + D LRRDFTINA+ D+ + D G
Sbjct: 358 GEEYALARTERKSGRGYRGFVVDADPLVTLEEDLLRRDFTINAIARDEDTGEFFDPYNGA 417
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ R ++ +G A +ED +R+LR RF A A++ +
Sbjct: 418 RDLQARVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTIAPETAALMREMAASGELD 474
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E+ + L P + +++ + I ++ + E
Sbjct: 475 SLVPERVWQELRRALTCAQPSAFLRTLHDTDGLRAILPEIDALYGVPQRAQFHPEVDTGI 534
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + I+ D + + + + + +
Sbjct: 535 HQEMVSDMAARIAPGDALVGFAALTHDLGKALTPPEQWPRHIMHEQRGVAPLQALCERLK 594
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ D +A + L+ + L + ++L +++P
Sbjct: 595 VPQDYRQLAVIACREHLNVHRLPELRDRTVHELLVRCDAFRRPERIAQLALVCEADKRGR 654
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVH 387
+ D+ G+ G ++G L
Sbjct: 655 LGSEEAAYPQGAELKRLHAAASAINARDLAADGLQ-GPQIGEALTK 699
>gi|71899852|ref|ZP_00682001.1| Polynucleotide adenylyltransferase [Xylella fastidiosa Ann-1]
gi|71730369|gb|EAO32451.1| Polynucleotide adenylyltransferase [Xylella fastidiosa Ann-1]
Length = 416
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 59/414 (14%), Positives = 120/414 (28%), Gaps = 57/414 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
KS +VGGAVRD+L+ D D P + + P + + K
Sbjct: 2 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMKSL------GFKPVGRDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y T + D RRDFTINA+ DQ + G
Sbjct: 54 TGEEFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIARDQTNGTLIDPYGG 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
+ + + ED LR+LR RF A ++ +
Sbjct: 114 VNDLEQRVLR--HISPAFAEDPLRVLRAARFMARLAPLGFSIAPETLAMMRQMAANGELN 171
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ERIW E+++ L P + + + + ++ + E
Sbjct: 172 SLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPELNALYGVPQHADYHPEIDTGL 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + ++ D + + + ++ +
Sbjct: 232 HQELVSDIAAKLAPGDMLIGFAALCHDLGKALTPRATWPHHPMHEQRGMAPTQQLSERLK 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ + +A + L+ + L+ + ++L +++P
Sbjct: 292 VPRNYQQLALIACREHLNVHRLSKLHDNTVYELLQRCDAFRRPERIAQLAIVCEADYRGR 351
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
+ D+ + + G ++G L + I+S
Sbjct: 352 YGHEDANYPQGQHLCRLHAAALAINARDLNRQDLH-GTQIGEALAQARIRAISS 404
>gi|188575215|ref|YP_001912144.1| tRNA nucleotidyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188519667|gb|ACD57612.1| tRNA nucleotidyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 713
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 66/406 (16%), Positives = 128/406 (31%), Gaps = 57/406 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD+L+ D D D+ +K P + + +
Sbjct: 305 KIYLVGGAVRDALLGQPAGDRDWVVVG-ADQ--ARMEAQGFK--PVGKDF--PVFLHPRS 357
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQG-KVIDYVGGL 142
+ R++ + Y V D + D LRRDFTINA+ D+ + D G
Sbjct: 358 GEEYALARTERKSGRGYRGFVVDADPLVTLEEDLLRRDFTINAIARDEDTGEFFDPYNGA 417
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ R ++ +G A +ED +R+LR RF A A++ +
Sbjct: 418 RDLQARVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTIAPETAALMREMAASGELD 474
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E+ + L P + +++ + I ++ + E
Sbjct: 475 SLVPERVWQELRRALTCAQPSAFLRTLHDTDGLRAILPEIDALYGVPQRAQFHPEVDTGI 534
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + I+ D + + + + + +
Sbjct: 535 HQEMVSDMAARIAPGDALVGFAALTHDLGKALTPPEQWPRHIMHEQRGVAPLQALCERLK 594
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ D +A + L+ + L + ++L +++P
Sbjct: 595 VPQDYRQLAVIACREHLNVHRLPELRDRTVHELLVRCDAFRRPERIAQLALVCEADKRGR 654
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVH 387
+ D+ G+ G ++G L
Sbjct: 655 LGSEEAAYPQGAELKRLHAAASAINARDLAADGLQ-GPQIGEALTK 699
>gi|113474845|ref|YP_720906.1| polynucleotide adenylyltransferase region [Trichodesmium erythraeum
IMS101]
gi|110165893|gb|ABG50433.1| Polynucleotide adenylyltransferase region [Trichodesmium erythraeum
IMS101]
Length = 423
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 61/408 (14%), Positives = 140/408 (34%), Gaps = 40/408 (9%)
Query: 29 SCIVGGAVRDSLMNLSVQ--DIDIATTILPDRVMR-IFSKTRYKVIPTSISYGTIKIICR 85
+VGG+VRD+L+ D+D + R I + + + +++ +
Sbjct: 25 VYLVGGSVRDALLKRKTTYLDLDFIILDQAVSIARNIAKEYQAGFVVLDAERKIARVVFK 84
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
D + K D RRDFTINA+ + + +
Sbjct: 85 GTTVDFA--------------EIEGNSLKEDLWRRDFTINAIAYNPFTNELIDLFNALKD 130
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
I + + + + ED LR+LR +R A G I + + + +++ER+
Sbjct: 131 LQDGIIRMVKSEN-LKEDPLRLLRAYRQAAQLGFI-ISPETQTTIREFAPLITQVATERV 188
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-QEISLDQLSQVIEAEQVFEWKIDSL- 263
+E+ LL + I + G+ + F + + + + +++ + W +
Sbjct: 189 QTELGYLLSHPQGMIWIEKAWKNGLLSDYFPAATENLGIGKKVEIVVEKLQKNWSTLKVE 248
Query: 264 ---------------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN--CNFNQK 306
+ + ++ + + + I+ ++
Sbjct: 249 LGSGVRNTVKTSLLAIAKLAILVNSNPQKAEVELMRLKYSNAEIRSTIAVLKSLEKLSEI 308
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ +++ ++ + +A+ + C I + ++ P L+
Sbjct: 309 EVLHMSVREQYFFFQQIGKNFPALAVVAVAKGISMEEINCLIERYINPDDLVAHPTTLLS 368
Query: 367 GDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
G+D++ +P G VG +L + + E + L +KLIA
Sbjct: 369 GNDLITALKLPKGPIVGQLLTEIQIARAEENILTQDEAI-KLAQKLIA 415
>gi|123967863|ref|YP_001008721.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. AS9601]
gi|123197973|gb|ABM69614.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. AS9601]
Length = 415
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 55/389 (14%), Positives = 128/389 (32%), Gaps = 24/389 (6%)
Query: 23 NKGEDKSCIVGGAVRDSLMNL-------SVQDIDIATTILPDRVMRIFSKTRYKV----I 71
+ K VGG +RD L++ DID+ + + K V I
Sbjct: 29 SNNNTKVAFVGGYLRDLLISKFHKKSFSEPVDIDLVIEGSSIALAKFIKKNIVNVDLCLI 88
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
Y T++I DI + R ++ + V + D RRDF+IN++ +
Sbjct: 89 KEFNLYNTVEININDYKIDIASARKEIYSAPGLNPTVNKSTIEEDLKRRDFSINSIAFEV 148
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ I + G + + I +D R++R ++ + + +
Sbjct: 149 SKREIYDLYGGISDIKSKTLNL-LHSNSISDDPSRLIRCAKYASRLDFNISNDTLKQSQE 207
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
++ S + + + + + I + + + L++ I+
Sbjct: 208 TVRQWPWKSSETHQKMIYPPAIGMRIRMELAEICKHDNLTNVISIINKWEVISILNENIK 267
Query: 252 AEQVFEWKIDSLLR---FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN---FNQ 305
++ F ++ + + +L +D + + ++F + L + N
Sbjct: 268 VDKRFLRGLNWIKKLKGNHMLYLLKDSEDLEKGCQRFLVNNSEIKILEDYLNIKKILNKN 327
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ + + + + + L + + L + I K
Sbjct: 328 QKDFNHFSPSSWTEFIEDRNLNDETVKLLICDGGPYWRKLFKWLFIYKFIKSKK------ 381
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
G+ + K G PGK++G + + I+
Sbjct: 382 DGETLKKEGWEPGKEMGKEIKRLRYLEID 410
>gi|292490381|ref|YP_003525820.1| polynucleotide adenylyltransferase region [Nitrosococcus halophilus
Nc4]
gi|291578976|gb|ADE13433.1| Polynucleotide adenylyltransferase region [Nitrosococcus halophilus
Nc4]
Length = 403
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 58/340 (17%), Positives = 120/340 (35%), Gaps = 18/340 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ V++ D + P Y+ P + + +
Sbjct: 2 EIYLVGGAVRDKLLGRPVKERDYVVVGATP----ASLLAQGYR--PVGKDF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ T Y + D RRD TINA+ +G + D GG
Sbjct: 54 TQEEYALARTERKTGPGYKGFEVYAAPDVTLEEDLQRRDLTINAIAESPEGALFDPFGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILS 201
DL ++ + +ED +RILR RF A + + ++ L+ ++ A + L
Sbjct: 114 QDLERGILRHV---SPAFVEDPVRILRVARFAARFDFEVAPETMALMQAMVAAGEVDHLV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
ER+W E+ + L +P + G IF +++ + + E
Sbjct: 171 PERVWKELEQALAESHPRRFFEILRACGALARIFPEIERLFGVPQPKRYHPEIDTGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+L +S + ++ + + + + + + +
Sbjct: 231 KVLDMAARLSQDTQVRFAALIHDLGKGETL-PSEWPHHRGHGERGAALVLTLCQRLRVPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+A + +L++L+ + +++P
Sbjct: 290 AYQELAVHVARYHDQVHRAQELRPGTLLKLLNRVDAFRRP 329
>gi|307546068|ref|YP_003898547.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Halomonas
elongata DSM 2581]
gi|307218092|emb|CBV43362.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Halomonas
elongata DSM 2581]
Length = 381
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 67/390 (17%), Positives = 139/390 (35%), Gaps = 31/390 (7%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
VGGAVRD+L+ V D+D PD + + P + +
Sbjct: 10 AGLDVYRVGGAVRDALLGWPVTDVDWVVVGATPDAMQQR------GFKPVGRDF--PVFL 61
Query: 84 CRKKYFDITTLRSDLITDGRYA----KVVFTRDWKADSLRRDFTINALYADQQGKVIDYV 139
+ + R++ + Y + + D RRD TINA+ G+++D
Sbjct: 62 HPDSHEEFALARTERKSGHGYTGFEIHASPSVTLEEDLARRDLTINAMAETPSGELVDPF 121
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKK 195
GG DL R ++ + +ED LR+LR RF A Y + +
Sbjct: 122 GGRADLEARVLRHV---SPAFIEDPLRVLRVARFLARYAGLGFVIAEETLTLMRRLVTSG 178
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS---LDQLSQVIEA 252
+ L +ER+W+E K L P + + G + ++ E + + L ++
Sbjct: 179 EIAHLVAERVWTETEKALGEPWPDVYFQTLDDCGALAALMPELVEDAAQLDEALGRLQRL 238
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ + + + R+ L+ + + ++ LP+ + + + + +
Sbjct: 239 PEDIDSRDAAFWRWARLVEHLTPEQRRRLTERLRLPKAVSRLADQAAHTHRLVHETGVVD 298
Query: 313 IKK-LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
++ + +L G ++ + +L L + + P +
Sbjct: 299 GERVMAWLEGIDAWRRSERVPSLIALVSLDDAGLAEDLALAWRLATQILPKSLVD----- 353
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401
G G+ +G L ++E I+ + +
Sbjct: 354 -EGYK-GRALGEELARRRREAIDGVMETER 381
>gi|110834913|ref|YP_693772.1| tRNA cytidylyltransferase [Alcanivorax borkumensis SK2]
gi|122959348|sp|Q0VMU8|CCA_ALCBS RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|110648024|emb|CAL17500.1| tRNA cytidylyltransferase [Alcanivorax borkumensis SK2]
Length = 410
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 60/343 (17%), Positives = 114/343 (33%), Gaps = 21/343 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRDSL+ L V + D P + ++ P + + K
Sbjct: 3 VYLVGGAVRDSLLGLPVTEKDWVVVGATPKEM----EANGFR--PVGKDF--PVFLHPKT 54
Query: 88 YFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y F T + D +RRD TINA+ + G++ID G
Sbjct: 55 QEEYALARTERKSGHGYGGFTFHAASTVSLEEDLIRRDLTINAMAQARGGEIIDPFNGRV 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203
DL+ R ++ + ED LR+LR RF A Y + +
Sbjct: 115 DLKARLLRHV---SPAFAEDPLRVLRVARFAARYHWLGFQVADDTLMLMKQLSDSGELGY 171
Query: 204 ----RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
R+W E ++ L ++P ++ G +F ++ + + E
Sbjct: 172 LVAERVWKETSRALMERDPQVFFQVLHRCGALHALFPELAALDGVPQPEQHHPEVDTLLH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
L+ + + + + LS ++ K +
Sbjct: 232 QFLCLKQAARLGLSLNARYALLCHDLGKGKTPKEEWPRHIAHEIRSARLSK-KVSKRLKV 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L H + + ++ + ++P
Sbjct: 291 PKEAATLATLVAEFHTHSHRALELKPATVWKLFKSLDILRRPE 333
>gi|78046329|ref|YP_362504.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|123585892|sp|Q3BXK9|CCA_XANC5 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|78034759|emb|CAJ22404.1| tRNA nucleotidyltransferase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 410
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 62/406 (15%), Positives = 125/406 (30%), Gaps = 57/406 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD+L+ D D P + + +
Sbjct: 2 KIYLVGGAVRDALLEQPAGDRDWVVVG-----ADQAQMEAQGFKPVGKDF--PVFLHPRS 54
Query: 88 YFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGL 142
+ R++ + Y + + D LRRDFTINA+ D++ ++ D G
Sbjct: 55 GEEYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAIARDEETGELFDPYNGA 114
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ R ++ +G A +ED +R+LR RF A A++ +
Sbjct: 115 RDLQARVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTLAADTAALMREMAASGELD 171
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E+ + L P + +++ + I +V + E
Sbjct: 172 SLVPERVWQELRRALSCAQPSAFLRTLHDADALRVILPEVDALYGVPQRAEFHPEVDTGI 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + ++ D + + + + + +
Sbjct: 232 HQEMVSDMAARLAPGDALVGFAALTHDLGKALTPPEEWPRHVMHEQRGVAPLQALCERLK 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ D +A + L+ + L + ++L +++P
Sbjct: 292 VPQDFRQLAIIACREHLNVHRLAELRDRTLHELLVRCDAFRRPERIAQLALVCEADKRGR 351
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVH 387
+ D+ G+ G ++G L
Sbjct: 352 LGSEEAAYPQGEALKRLHAAALAINARDLAAEGLQ-GPQIGEALTK 396
>gi|157110831|ref|XP_001651265.1| poly(a) polymerase [Aedes aegypti]
gi|108883866|gb|EAT48091.1| poly(a) polymerase [Aedes aegypti]
Length = 267
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 90/260 (34%), Positives = 134/260 (51%), Gaps = 4/260 (1%)
Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIP-TSISYGTIKIIC-RKKYFDITTLRSDL 98
M +DIDIATT P + IF+K +++ +GTI K+ F+ITTLR D
Sbjct: 1 MGKCPKDIDIATTATPTEMKEIFNKENIRMVNMNGEKHGTITPRINDKENFEITTLRIDA 60
Query: 99 ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHH 158
+TDGR+A+V+ T DW D+ RRD TIN+++ GKV DY G DL+ R + F+GD
Sbjct: 61 VTDGRHAEVIHTTDWLLDANRRDLTINSMFLGFDGKVYDYFYGYEDLQKRRVAFVGDPDL 120
Query: 159 RILEDYLRILRFFRFFAHY--GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216
RI EDYLRILR+FRF+ + N D + L K GL +S ERIW E K+L
Sbjct: 121 RIKEDYLRILRYFRFYGRIAENDDNHDEETLRIIAKNAAGLAKISGERIWQEWKKILTGN 180
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK 276
+ + M N G+ + L Q + + + E V + +I + L+ +
Sbjct: 181 FGCDLTIRMINCGLAPHMGLPDQPNTDEFKAVFKRVEAVHKDEIQPITVLSALLLVPEDA 240
Query: 277 SILSMAKKFSLPREIRYFLI 296
L++ KF++ + +
Sbjct: 241 ITLNLRLKFTVFERELSYFL 260
>gi|15837963|ref|NP_298651.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Xylella
fastidiosa 9a5c]
gi|73619906|sp|Q9PDL7|CCA_XYLFA RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|9106365|gb|AAF84171.1|AE003968_2 tRNA adenylyltransferase [Xylella fastidiosa 9a5c]
Length = 416
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 58/414 (14%), Positives = 119/414 (28%), Gaps = 57/414 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
KS +VGGAVRD+L+ D D P + + K + P + K
Sbjct: 2 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKAVGRDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y T + D RRDFTINA+ +
Sbjct: 54 TGEEFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIA--HDQTNDTLIDPY 111
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
+ + + + ED LR+LR RF A ++ +
Sbjct: 112 GGVNDLEQRILRHISPAFAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASGELN 171
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ERIW E+++ L P + + + + ++ + E
Sbjct: 172 SLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPELNALYGVPQHADYHPEIDTGL 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + ++ D + + + ++ +
Sbjct: 232 HQELVSDMAAKLAPGDMLIGFAALCHDLGKALTPRATWPHHPMHEQRGMAPTQQLSERLK 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ D +A + L+ + L+ + ++L +++P
Sbjct: 292 VPRDYQQLALIACREHLNVHRLSKLHDHTVYELLQRCDAFRRPERIAQLAIVCEADYRGR 351
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
+ D+ + + G ++G L + I+S
Sbjct: 352 YGHEDANYPQGQHLCRLHAAALAVNARDLNRQDLH-GTQIGEALAQARIRAISS 404
>gi|212711175|ref|ZP_03319303.1| hypothetical protein PROVALCAL_02247 [Providencia alcalifaciens DSM
30120]
gi|212686343|gb|EEB45871.1| hypothetical protein PROVALCAL_02247 [Providencia alcalifaciens DSM
30120]
Length = 413
Score = 106 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 70/344 (20%), Positives = 130/344 (37%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L + D D P+ ++ + K P + K
Sbjct: 2 KVYLVGGAVRDKLLGLPISDRDYVVVGTTPEAMLAKGFQQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ Y + D LRRD TINA+ G++ID G+
Sbjct: 54 THEEYALARTERKIGSGYTGFSCYSAPDVTIEDDLLRRDLTINAIAQSDTGELIDPHHGV 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKAKKGLK 198
DL+NR ++ + LED LR+LR RF A Y ++ L+ S+ L
Sbjct: 114 RDLKNRVLRHV---SDAFLEDPLRVLRVARFAARYYAQGFRIAPETMFLMQSMSESGELS 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W+E +K L + +P + G +F ++ + + E
Sbjct: 171 HLTPERVWTETHKALMSNSPQIYFEVLRECGALAILFPEIDNLFGVPAPEKWHPEVDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
I ++R + +S ++ + + I ++ + +
Sbjct: 231 HILMVMRVVATLSKDIDVRFAALCHDLGKGLTPKAVW-PSHPQHGEAGIPLIIDLCERYK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + + C ++ + + W+KP
Sbjct: 290 IPSSTKDLACLAAKYHDMIHVINKLNACDLVGMFDGLDSWRKPE 333
>gi|21241488|ref|NP_641070.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Xanthomonas axonopodis pv. citri str. 306]
gi|73619904|sp|Q8PPG9|CCA_XANAC RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|21106832|gb|AAM35606.1| tRNA nucleotidyltransferase [Xanthomonas axonopodis pv. citri str.
306]
Length = 410
Score = 106 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 64/406 (15%), Positives = 126/406 (31%), Gaps = 57/406 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD+L+ D D P + + +
Sbjct: 2 KIYLVGGAVRDALLEQPAGDRDWVVVG-----ADQAQMEAQGFKPVGKDF--PVFLHPRS 54
Query: 88 YFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGL 142
+ R++ + Y + + D LRRDFTINA+ D+ ++ D G+
Sbjct: 55 GEEYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAIARDEDTGQLFDPYNGV 114
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+ R ++ +G A +ED +R+LR RF A + + A L
Sbjct: 115 RDLQARVLRHVGPA---FIEDPVRVLRAARFMARLAPLGFSLAAETAALMRDMAAGGELD 171
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER+W E+ + L P + +++ + I +V + E
Sbjct: 172 SLVPERVWQELRRALSCAQPSAFLRTLHDADALRVILPEVDALYGVPQRADFHPEVDTGI 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + ++ D + + + + + +
Sbjct: 232 HQEMVSDIAARLAPGDALVGFAALTHDLGKALTPQAQWPRHVMHEQRGVAPLQALCERLK 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ D +A + L+ + L + ++L +++P
Sbjct: 292 VPQDFRQLAIIACREHLNVHRLAELRDRTLHELLVRCDAFRRPERIAQLALVCEADKRGR 351
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVH 387
+ D+ G+ G ++G L
Sbjct: 352 LGSEEAAYPQGEALKRLHAAALAINARDLAAEGLQ-GPQIGEALTK 396
>gi|71027783|ref|XP_763535.1| tRNA nucleotidyltransferase [Theileria parva strain Muguga]
gi|68350488|gb|EAN31252.1| tRNA nucleotidyltransferase, putative [Theileria parva]
Length = 605
Score = 106 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 72/460 (15%), Positives = 162/460 (35%), Gaps = 57/460 (12%)
Query: 6 QHKWFHDSDLINILSLLNKG------EDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDR 58
+ K+ + +LLN+ + +VGG VRD L++ + +DIDIA + +
Sbjct: 140 RAKFKITESENRLFNLLNECVDFYDLQMDLRVVGGWVRDKLLDKNNKDIDIAIPKMTGIK 199
Query: 59 VMRIFSKT------------RYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYA 105
+ K P + T + D LR++ +
Sbjct: 200 FCEYLNNFTKDKYGFSRTVGVVKRCPEQSKHLETATMNLLGFDVDFVNLRTEDYSSNTRI 259
Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILED 163
+ D++RRDFT+N+L+ + I+ G DL+N I+ ++D
Sbjct: 260 PDMKIGTPLEDAMRRDFTVNSLFYNISKNFIEDFTGTGLEDLKNGIIRTCSSPFETFMDD 319
Query: 164 YLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222
LR++R RF + + + + + K + ++ RI EI +L + A
Sbjct: 320 PLRLIRAVRFSSRFNFELDEKLTDSINEQVLKALSQKVTRPRISQEIENILLKSDVSEAF 379
Query: 223 VHMYNGGIFKEIFLDVQEISLDQLSQVIE--------------AEQVFEWKIDSLLRFIV 268
MY I + ++ + ++ E++ + K + +
Sbjct: 380 NLMYKFKILHVLLNVPPYDYDEEEKKRMKRQITDDMLTKSCSLMERLKKSKFPEIDYKCL 439
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+S + E + + ++ ++ +I + F + D + +
Sbjct: 440 YLSALVTPTRELPPIGKMSVAEYLVKELLKLSNQYSSRSHTISQGSVTFAKFLDDSKVDR 499
Query: 329 ---------------LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF--PLTGDDVV 371
+ L L + ++ ++ + +D+ + F P+TG +++
Sbjct: 500 VSLGSVIRSIGPLWKESLLLCLAELDKDYKVYNELVPLANDLRITEAYNFKAPITGQELM 559
Query: 372 KY--GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
I G + L E + + +++++L L+
Sbjct: 560 DLLPKITSGPEFKKALEFQVTERLKNE-NINKDELKDKLK 598
>gi|308050970|ref|YP_003914536.1| metal dependent phosphohydrolase [Ferrimonas balearica DSM 9799]
gi|307633160|gb|ADN77462.1| metal dependent phosphohydrolase [Ferrimonas balearica DSM 9799]
Length = 407
Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 58/345 (16%), Positives = 117/345 (33%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V+D D + +++ + + K P + K
Sbjct: 2 QIYLVGGAVRDELLGLKVKDRDHLVVGASAEQMSALGYRQVGKSFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y F T + D +RRD TINA+ D+QG + D G
Sbjct: 54 SGEEYALARTEKKVGHGYGGFDFDAAPTVTLEEDLIRRDLTINAMARDEQGVIHDPYNGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL R ++ + +ED LR+LR RF A + ++ +
Sbjct: 114 ADLDARLLRHV---SDAFVEDPLRVLRVARFAARFHGLGFTVADETLALMQQLSDSGELD 170
Query: 203 ERIWSEINK----LLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-LDQLSQVIEAEQVFE 257
+ + L +P + +F ++ +S + Q Q ++
Sbjct: 171 YLSAERVWQETERALGEPHPEVYFEVLQRCHALPRLFPELAALSGVPQPPQWHGGLDAWQ 230
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ +L + ++ + + + + +
Sbjct: 231 HTLMAL--QQAVALGASGAERFAVLVHDLGKGLTPAEQWPRHIGHEHASIKPVQALCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L L L + ++++ + W+KP
Sbjct: 289 RVPNEWRELALLVAELHLKVHRAEELKPATLVRLFDQLDGWRKPE 333
>gi|254449034|ref|ZP_05062487.1| tRNA nucleotidyltransferase [gamma proteobacterium HTCC5015]
gi|198261319|gb|EDY85611.1| tRNA nucleotidyltransferase [gamma proteobacterium HTCC5015]
Length = 392
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 73/387 (18%), Positives = 133/387 (34%), Gaps = 33/387 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V+D D + ++ + + P + +
Sbjct: 2 QIYLVGGAVRDQLLGLDVKDRDWVVVGATAEDMLAQGYQQVGRQFPVFLD--------PQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y+ + D LRRD TINA+ D+QG++ID G
Sbjct: 54 SKEEHALARTETKIGPGYSGFEVHAAPDVTLEQDLLRRDLTINAMAQDRQGQLIDEHAGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS- 201
DL ++ I ED LRILR RF A + + + D VA A+ K++
Sbjct: 114 ADLSAGVLRHI---SPAFREDPLRILRVARFAARFCQPLLARDFEVARETAQLLCKMVEA 170
Query: 202 -------SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---QEISLDQLSQVIE 251
ER W E + + P + MY G + ++ + S
Sbjct: 171 NEVEALSKERAWQEFERAMGETQPRRFLEVMYQCGALQRLWAPAVQSDDWSELWPRLREV 230
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
A+ V +RF +I ++++ P+ + K +
Sbjct: 231 ADIVPALSASPEVRFAAIIGVLPAPQAKLLSEQMGAPKRFKQLAELVATHANTVKHSTRQ 290
Query: 312 EIKKLFYLYGDKVM---IAKLKIFLALHYNNLT--HQDTCFILQVLSDIIHWKKPLFPLT 366
+ L +L L + ++ ++ +T
Sbjct: 291 PPPAVLNLLNKMDAFRKPERLDDALLACEAAIRSLPKERQRPQPQREYLLSCYYAASAVT 350
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWI 393
D++K + GK + + ++ I
Sbjct: 351 AADMMKLRL-EGKALAEEIDTHRKAAI 376
>gi|87123153|ref|ZP_01079004.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
RS9917]
gi|86168873|gb|EAQ70129.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
RS9917]
Length = 398
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/377 (14%), Positives = 118/377 (31%), Gaps = 33/377 (8%)
Query: 31 IVGGAVRDSLMNLS-------VQDIDIATTILPDRVMRIFSKT----RYKVIPTSISYGT 79
+VGGAVRD+L++ + D+D+ +R+ + R + +GT
Sbjct: 19 LVGGAVRDALLHHEHRDPWRGLPDLDLVVEGSSERLAHGLRQQLGPERVSELRVHGRFGT 78
Query: 80 IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV 139
++++ D+ R + VV D RRDF++NA+ +
Sbjct: 79 VEMVVDGVLLDLAQARQERYPAPGENPVVEPGPLPQDLARRDFSVNAMALLLSDGSLLDP 138
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-------KNIDSDGLVASIK 192
G + + +D R++R R+ A G + +
Sbjct: 139 HGGRQHLAQRQLAFLHPS-SVADDPTRVIRAARYAARLGFSLAPQALDQLQRTLQAWPWR 197
Query: 193 AKKGLKILSSE-----RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ G S+ R+ E+ LLE + A+ + G + +Q+ L
Sbjct: 198 WRLGDDPASAPPALATRLRMELELLLEREAWAAALSQLQAWGALVLLDPALQQH-PRALQ 256
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+ + + + L + + ++ E+ F +
Sbjct: 257 RRLRWAARLQLPLLCALVAAADAPLELAARLQLPQQQQRWLEELGAFQAWLMEQVLPEAW 316
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
+ L + + ++ Q +L W+ P +
Sbjct: 317 QGWSPARWCEALEARPWPSEVVALAVS--------QQGPCWRPLLRWWGRWRHVTPPRSA 368
Query: 368 DDVVKYGIPPGKKVGNI 384
+++ G+ PG +G
Sbjct: 369 RELMATGLQPGPALGEA 385
>gi|313681139|ref|YP_004058877.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Sulfuricurvum kujiense DSM 16994]
gi|313153999|gb|ADR32677.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Sulfuricurvum kujiense DSM 16994]
Length = 462
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 69/452 (15%), Positives = 140/452 (30%), Gaps = 61/452 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDI----ATTILPDRVMRIFSKTRY 68
L+ ++ L+ K VGG VRD + D+DI T++ + +
Sbjct: 6 PPLVRLVEHLSHHGIKPIFVGGFVRDFFTGHTTSDLDIELYGVTSL---ETLEALLRPFG 62
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA----KVVFTRDWKADSLRRDFTI 124
K+ S+G +K+ D + R++ + + + D+ A + RRDFTI
Sbjct: 63 KLGLYGKSFGVLKLNYEGYSIDFSPPRTESKSGFGHKGFELEWFSDLDFSAAARRRDFTI 122
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY--GEKNI 182
NA+ D + + G + D ++D LR+LR +F A +
Sbjct: 123 NAIGYDPLTQTLLDPFGGVEDLKAKRLRCVDPE-TFIDDPLRVLRAVQFTARFELTCDKN 181
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL------ 236
I ++ LL++ P + + + G
Sbjct: 182 LLALCRQMIANGALNELPKERIFEEFKKLLLQSNRPSIGMALLRDMGALGFFTPLDRLEE 241
Query: 237 -DVQEISLDQLSQVIEAEQVF---------EWKIDSLLRFIVLISWQDKK---------- 276
++ S + S + EW+ D +L VL+ K
Sbjct: 242 TPQEKDSHPEGSVWVHTLMALDSMASLRCGEWRDDIILMLAVLLHDIGKPDTTLYADGIL 301
Query: 277 -----------SILSMAKKFSLPREIRYFLISFFNCN--FNQKTLSIPEIKKLFYLYGDK 323
++ + + + ++ + + S + L
Sbjct: 302 NAPKHAEIGAEMAQDWLERVTEDKTLISRILPLIRYHGWPRKLYRSNALDSDILRLSTYV 361
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW--------KKPLFPLTGDDVVKYGI 375
+ + + A + + + + + P+ L G D++ G+
Sbjct: 362 CIRDLILVAKADFFGRAFVGNIPEHFEAGEWLYERASALGVLVEPPVPLLMGRDLIALGM 421
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
PP + +IL +N F + L L
Sbjct: 422 PPSEAFKSILNDAYDAQLNQLFFTRDQALEWL 453
>gi|311695885|gb|ADP98758.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[marine bacterium HP15]
Length = 373
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 73/371 (19%), Positives = 126/371 (33%), Gaps = 27/371 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D P ++ K P + +
Sbjct: 2 QAYLVGGAVRDELLGLEVKDRDWVVVGATPREMLANGFKQVGADFPVF--------LHPR 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y + D RRD TINA+ + G ++D G
Sbjct: 54 TREEYALARTERKQGRGYHGFTVYSAPDVTLEQDLKRRDLTINAMAKAENGDLVDPFEGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
D+ +R ++ + ED LRILR RF A + ++ +
Sbjct: 114 RDIEDRKLRHV---SEAFAEDPLRILRTARFAARFHPLGFSVCDQTMALMKRMVDSGEVD 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER+W E + L + P + + G + + ++ + QL+
Sbjct: 171 HLVPERVWQEFQRALHEQAPEAFFEVLRDCGALEVLIPELASEKVFQLAMAALGCVHRRL 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY--FLISFFNCNFNQKTLSIPEIKKL 316
++ RF L+S D AK P + + L++ F PE + L
Sbjct: 231 HAETEERFAALLSPLDAPVAKDRAKALKAPNDCQNLARLVTAFTPQIRDIDAQRPEAETL 290
Query: 317 FYLYGD-KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375
L V + L +L + P ++ G
Sbjct: 291 LDLLDQADVWRRPERFSQLTKVLECALPGDSLTLDLLRTASEAATGVEP---RTLLAQGY 347
Query: 376 PPGKKVGNILV 386
GK++GN +
Sbjct: 348 K-GKELGNAIR 357
>gi|157960799|ref|YP_001500833.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella pealeana ATCC 700345]
gi|189081879|sp|A8H161|CCA_SHEPA RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|157845799|gb|ABV86298.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella pealeana ATCC 700345]
Length = 412
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 119/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L V+D D + P++++ + K P + K
Sbjct: 2 KIYLVGGAVRDKLLKLPVKDHDYMVVGATPEQMLSLGYNQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ T Y T + D LRRD TINA+ D G + D G+
Sbjct: 54 TGQEYALARTERKTAAGYGGFSVDAAPTVTLEQDLLRRDLTINAIAQDDAGNLYDPYNGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL R ++ + +ED LR+LR RF A + S+
Sbjct: 114 ADLEKRILRHV---SDAFVEDPLRVLRVARFAARFHGLKFTIAPETLSLMTTLSRSGELE 170
Query: 203 ERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ K L NP + G +F +++ + + E
Sbjct: 171 ALTAERVYLELDKALSTDNPQVFFQVLKECGALAVLFPEIEALFGVPQPENWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L +S + ++ + + + + + I + + F
Sbjct: 231 HTMMVLEQAAKLSDDNSVRFAALVHDLGKALSPKEH-LPKHHGHGQKGLPLIKSLCERFR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L + + +T ++++ W+KP
Sbjct: 290 VPNEYRDLALLVCDQHQNIHKITELRADTLVKLFDKADFWRKPQ 333
>gi|161723240|ref|YP_096745.2| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|73619789|sp|Q5ZRX9|CCA_LEGPH RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
Length = 410
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 67/345 (19%), Positives = 126/345 (36%), Gaps = 21/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ + VQ+ D P+ +++ K + + +
Sbjct: 2 KVYLVGGAVRDRLLGIPVQEQDWVVVGATPEELLKR------KYRQVGRDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D RRD TINA+ D+QG +ID G
Sbjct: 54 TKEEYALARTERKSAPGYYGFICDFSESVTLEEDLARRDLTINAMAMDEQGNLIDPYQGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL + ++ + +ED +R+LR RF + + + S+ + L
Sbjct: 114 RDLEEKLLRHV---SSAFVEDPVRVLRVARFASRFHHLGFRIANETRLLMYSMVKQGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER+W E K LE KNP I+ + + + I ++ + E
Sbjct: 171 HLIPERVWQEWQKSLEEKNPEQFILSLRSCDALRVILPEINSLFGVPNPHQYHQEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
LR +S + ++ + + + T I +
Sbjct: 231 HSLMTLRASSELSEEPLVRFAALVHDLGKASTPIQAW-PKHHGHEEEGTKLIRALCARLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
+ D +A L+ + L I+++L + +++P
Sbjct: 290 IPNDYRDLAVTVARAHLNIHRLCELRPNTIVKLLEQVDAFRRPQL 334
>gi|297566620|ref|YP_003685592.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Meiothermus silvanus DSM 9946]
gi|296851069|gb|ADH64084.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Meiothermus silvanus DSM 9946]
Length = 426
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 71/400 (17%), Positives = 140/400 (35%), Gaps = 64/400 (16%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD ++ +D+D P+ R + + + P +++
Sbjct: 9 QGYLVGGAVRDLMLGKRPKDLDFVVP-NPEEAARDLAHRLGGSIFPLDEKRRFWRVVAPG 67
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146
+D + + D LRRDFT+NAL ++QG V+ DL
Sbjct: 68 TTYDYA---------------PMPQGLEVDLLRRDFTLNALAVNEQGLVLGLPIARYDLE 112
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKGLKILSSE 203
+R ++ I A+ + ED LR LR R G E + + + ++ + + E
Sbjct: 113 HRLLRAIRKAN--LWEDPLRSLRAVRITLTAGLRLEPHTEGWIYEHAQYLRESGALPAWE 170
Query: 204 RIWSEINKLLEAKNPLNAIVHMYN----------------GGIFKEIFLDVQEISLDQLS 247
R+ E++++L + + LDV SL+ L+
Sbjct: 171 RVGEELSQILRHPAAAVGFLRLERAGLLEVYLPELAAGIGVEQHGAHHLDVWRHSLEVLA 230
Query: 248 QV-------------------IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
Q+ + Q +W + + + + P
Sbjct: 231 QLTLLRPDAHLALRWAALLHDVAKPQTRQWSPEKGRYTFYGHDALGAEQARQILNRLRQP 290
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT-CF 347
E+ + + E+++ + + + + + LA L +++
Sbjct: 291 SEVVAEAVRLVRLHMQHPPQGGRELRRFLHR-RREALPELIWLQLADMTGILGYRERVEE 349
Query: 348 ILQVLSDIIHWKK----PLFPLTGDDVVK-YGIPPGKKVG 382
+ + L I + P L G +V++ G+ PG KVG
Sbjct: 350 LREQLQAIESLAEGTPSPKPLLDGREVMRLLGLEPGPKVG 389
>gi|217974315|ref|YP_002359066.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella baltica OS223]
gi|254813698|sp|B8EBU8|CCA_SHEB2 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|217499450|gb|ACK47643.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella baltica OS223]
Length = 416
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 128/344 (37%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+NL ++D D + P++++++ + K P + K
Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDYLVVGATPEQMLQLGYRQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D++G + D G+
Sbjct: 54 NQQEYALARTERKIGLGYGGFSCHASPDVTLEQDLLRRDLTINAIAQDEKGNLYDPFNGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL R ++ + +ED LRILR RF A + ++ + +
Sbjct: 114 EDLNARLLRHV---SDAFVEDPLRILRVARFAARFHALGFHIAAETLALMRQISASDELN 170
Query: 203 ----ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E++K L +P ++ G + +F ++ + + E
Sbjct: 171 ALTAERVWQEVDKSLGGPHPEVFFEVLHQCGALEVLFPEIFALFGVPQPEKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L L++ ++ + + + + + I +
Sbjct: 231 HTLMVLAQAALLTDDKSVRFAALVHDLGKALSPKEH-LPKHHGHGQKGLPLIKALCTRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L + + I+++ W+KP
Sbjct: 290 VPNETRDLALLVSDQHQNVHQAFELRAETIVKIFDKADFWRKPE 333
>gi|54298734|ref|YP_125103.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Legionella
pneumophila str. Paris]
gi|73619788|sp|Q5X1E5|CCA_LEGPA RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|53752519|emb|CAH13951.1| tRNA nucleotidyltransferase [Legionella pneumophila str. Paris]
Length = 410
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 64/345 (18%), Positives = 125/345 (36%), Gaps = 21/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ + VQ+ D P+ +++ K + + +
Sbjct: 2 KVYLVGGAVRDRLLGIPVQEQDWVVVGATPEELLKR------KYRQVGRDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D RRD TINA+ D+QG +ID G
Sbjct: 54 TKEEYALARTERKSAPGYYGFICDFSESVTLEEDLARRDLTINAMAMDEQGNLIDPYQGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL + ++ + ED +R+LR RF + + + S+ + L
Sbjct: 114 RDLEEKLLRHV---SPAFAEDPVRVLRVARFASRFHHLGFKIANETRLLMYSMVKQGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER+W E K L+ KNP I+ + + + + ++ + E
Sbjct: 171 HLIPERVWQEWQKSLQEKNPEQFILSLRSCDALRVVLPEINSLFGVPNPHQYHQEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
LR +S + ++ + + + T I +
Sbjct: 231 HSLMALRASSELSEEPLVRFAALVHDLGKASTPIQDW-PKHHGHEEEGTKLIRALCARLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
+ D +A L+ + + I+++L + +++P
Sbjct: 290 IPNDYRDLAVTVARAHLNIHRVCELRPNTIVKLLEQVDAFRRPQL 334
>gi|297744919|emb|CBI38416.3| unnamed protein product [Vitis vinifera]
Length = 262
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 15/172 (8%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+L LL + ++ +VGG VRD ++N + +D D+ TT ++ + F + + +
Sbjct: 26 VLKLLQREGFEAYLVGGCVRDLILNKTPKDFDVITTAKLKQIKKRFRRAQI----VGRRF 81
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW----------KADSLRRDFTINAL 127
++ + ++++ + KV F++ + + RDFTIN+L
Sbjct: 82 PICRVHVKGSVIEVSSFETVAKHGEEKEKVSFSQMPSGCDESDFNRWRNCMHRDFTINSL 141
Query: 128 YADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
+ D K+ DY G+ DLR+ ++ + A ED R+LR R A G
Sbjct: 142 FFDPFVNKIYDYANGMKDLRSLKLRTLIPAQLSFKEDCARMLRGLRIAARLG 193
>gi|251788433|ref|YP_003003154.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dickeya zeae Ech1591]
gi|247537054|gb|ACT05675.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dickeya zeae Ech1591]
Length = 415
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 117/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ V + D P+ +++ + + P + +
Sbjct: 2 KIYLVGGAVRDGLLGRPVTERDWVVVGATPEMLLQQGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D RRD TINA+ D+ G++ID GG
Sbjct: 54 TKEEYALARTERKSGNGYTGFTCQATPDITLEDDLQRRDLTINAIAQDEDGQLIDPYGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+NR ++ + ED LR+LR RF A Y +
Sbjct: 114 RDLQNRLLRHV---SEAFSEDPLRVLRVARFAARYAHLGFQIAEETLHLMQAMARDGELD 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L+ +NP + + G +F +V + E
Sbjct: 171 FLTPERVWKETEKALDTQNPQVYFQVLRDCGALAILFPEVDRLYGVPAPATWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S ++ L + + + + +
Sbjct: 231 HTMMSLAMAARLSPALDVRFATLCHDLGKG-LTPPELWPRHHGHGAAGVPLVEALCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + +L++ I W+KP
Sbjct: 290 VPNALRDLACLVAEYHDLIHTVQMLQAKTLLKLFDAIDVWRKPQ 333
>gi|270707707|ref|ZP_06223107.1| poly(A) polymerase [Haemophilus influenzae HK1212]
gi|270315767|gb|EFA27900.1| poly(A) polymerase [Haemophilus influenzae HK1212]
Length = 153
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78
+ L + ++ IVGG +RD L+ +D D+AT P+++ IF + +
Sbjct: 1 MEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQ---CRLVGRRFR 57
Query: 79 TIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLRRDFTINAL 127
I+ + ++ T R++ +G + + D++RRDFT+NAL
Sbjct: 58 LAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVRRDFTVNAL 117
Query: 128 YADQQGKVIDYVG 140
Y + Q +
Sbjct: 118 YYNPQDNTLRDYF 130
>gi|222109737|ref|YP_002552001.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acidovorax ebreus TPSY]
gi|254813690|sp|B9MCK1|CCA_ACIET RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|221729181|gb|ACM32001.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acidovorax ebreus TPSY]
Length = 425
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 56/345 (16%), Positives = 108/345 (31%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ V D D PD ++ +P + + +
Sbjct: 2 QIYMVGGAVRDRLLGRPVNDHDWVVVGATPDDMVAR------GYLPVGRDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYA----KVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGG 141
+ R++ + Y + + D RRD TINA+ A D
Sbjct: 54 TREEYALARTERKSGRGYRGFVVQTSPDVTLEEDLSRRDLTINAIAASADWTGAEDLFDP 113
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKI 199
R+ + + ED +RILR RF A + + + + + +
Sbjct: 114 YGGARDLQARVLRHVTDSFREDPVRILRVARFAARFTDFTVAPETMQLMREMVHDGEADH 173
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L ER+W E+ + L P + + G + +V+ + E
Sbjct: 174 LVPERVWQELARGLMEPQPSRMFDVLRDCGALAVVLPEVERLWGVPQRPEYHPEVDTGVH 233
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ +L + + + + S +K +
Sbjct: 234 LMMVLDMAAHLQAPLTVRF----ACLTHDLGKGTTPHDVLPRHIGHEQRSARLLKAVCER 289
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKP 361
V +L +A + N+ ++++L +KP
Sbjct: 290 LRVPVECRELADVVAREHGNIHRSGDLGAAALVRLLERCDAIRKP 334
>gi|54295580|ref|YP_127995.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Legionella
pneumophila str. Lens]
gi|73619790|sp|Q5WT58|CCA_LEGPL RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|53755412|emb|CAH16908.1| tRNA nucleotidyltransferase [Legionella pneumophila str. Lens]
gi|307611620|emb|CBX01304.1| transfer RNA nucleotidyltransferase [Legionella pneumophila 130b]
Length = 410
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 66/345 (19%), Positives = 125/345 (36%), Gaps = 21/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ + VQ+ D P+ +++ K + + +
Sbjct: 2 KVYLVGGAVRDRLLGIPVQEQDWVVVGATPEELLKR------KYRQVGRDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D RRD TINA+ D+QG +ID G
Sbjct: 54 TKEEYALARTERKSAPGYYGFICDFSESVTLEEDLARRDLTINAMAMDEQGNLIDPYQGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL + ++ + ED +R+LR RF + + + S+ + L
Sbjct: 114 RDLEEKLLRHV---SSAFAEDPVRVLRVARFASRFHHLGFRIANETRLLMYSMVKQGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER+W E K LE KNP I+ + + + I ++ + E
Sbjct: 171 HLIPERVWQEWQKSLEEKNPEQFILSLRSCDALRVILPEINSLFGVPNPHQYHQEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
LR +S + ++ + + + T I +
Sbjct: 231 HSLMTLRASSELSEEPLVRFAALVHDLGKASTPIQAW-PKHHGHEEEGTKLIRALCARLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
+ D +A L+ + + I+++L + +++P
Sbjct: 290 IPNDYRDLAVTVARAHLNIHRVCELRPNTIVKLLEQVDAFRRPQL 334
>gi|160874351|ref|YP_001553667.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella baltica OS195]
gi|189081878|sp|A9L5J0|CCA_SHEB9 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|160859873|gb|ABX48407.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella baltica OS195]
gi|315266586|gb|ADT93439.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella baltica OS678]
Length = 416
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 128/344 (37%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+NL ++D D + P++++++ + K P + K
Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDYLVVGATPEQMLQLGYRQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D++G + D G+
Sbjct: 54 NQQEYALARTERKIALGYGGFSCHASPDVTLEQDLLRRDLTINAIAQDEKGNLYDPFNGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
D+ R ++ + +ED LR+LR RF A + ++ + +
Sbjct: 114 EDINARLLRHV---SDAFVEDPLRVLRVARFAARFHALGFHIAAETLALMRQISASDELN 170
Query: 203 ----ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E++K L +P ++ G + +F ++ + + E
Sbjct: 171 ALTAERVWQEVDKSLGGPHPEVFFEVLHQCGALEVLFPEIFALFGVPQPEKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L L++ ++ + + + + + I +
Sbjct: 231 HTLMVLAQAALLTEDKSVRFAALVHDLGKALSPKEH-LPKHHGHGQKGLPLIKALCTRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L + + I+++ W+KP
Sbjct: 290 VPNETRDLALLVSDQHQNVHQAFELRAETIVKIFDKADFWRKPE 333
>gi|52630057|gb|AAU28798.1| tRNA nucleotidyltransferase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 424
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 67/345 (19%), Positives = 126/345 (36%), Gaps = 21/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ + VQ+ D P+ +++ K + + +
Sbjct: 16 KVYLVGGAVRDRLLGIPVQEQDWVVVGATPEELLKR------KYRQVGRDF--PVFLHPE 67
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D RRD TINA+ D+QG +ID G
Sbjct: 68 TKEEYALARTERKSAPGYYGFICDFSESVTLEEDLARRDLTINAMAMDEQGNLIDPYQGQ 127
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL + ++ + +ED +R+LR RF + + + S+ + L
Sbjct: 128 RDLEEKLLRHV---SSAFVEDPVRVLRVARFASRFHHLGFRIANETRLLMYSMVKQGELA 184
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER+W E K LE KNP I+ + + + I ++ + E
Sbjct: 185 HLIPERVWQEWQKSLEEKNPEQFILSLRSCDALRVILPEINSLFGVPNPHQYHQEIDTGI 244
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
LR +S + ++ + + + T I +
Sbjct: 245 HSLMTLRASSELSEEPLVRFAALVHDLGKASTPIQAW-PKHHGHEEEGTKLIRALCARLR 303
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
+ D +A L+ + L I+++L + +++P
Sbjct: 304 IPNDYRDLAVTVARAHLNIHRLCELRPNTIVKLLEQVDAFRRPQL 348
>gi|54307652|ref|YP_128672.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Photobacterium profundum SS9]
gi|73619818|sp|Q6LV05|CCA_PHOPR RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|46912075|emb|CAG18870.1| putative tRNA nucleotidyltransferase [Photobacterium profundum SS9]
Length = 411
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 120/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD+L+ L V D D P++++ + P + K
Sbjct: 2 QTYLVGGAVRDALLGLKVVDKDWMVVGATPEQMLAQGYEQVGSDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D +RRD TINA+ ++ G++ID G
Sbjct: 54 TKQEYALARTERKSGKGYTGFICYSAPDVTLEQDLMRRDLTINAIAQEKDGRLIDPYNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL N+ ++ + +ED LR+LR RF A + ++ + +
Sbjct: 114 QDLDNKILRHV---SPAFVEDPLRVLRVARFSARFAHLGFTIAPETIALMQEMVVAGELE 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L +NP + + G K + ++ + E
Sbjct: 171 ALTPERVWKEWEKSLSTENPEVFLTVLRQCGALKVVMPEIDALFGVPQPAQWHPEIDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + + I + +
Sbjct: 231 HTLMVAKQAAELSPNKVIRFAAQVHDLGKALSPK-DDLPSHKMHCKDGLKPIKALCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D A + ++ + +L I W+KP
Sbjct: 290 VPNDYRDTALMVCAQHTKIHHANEMRPATFVNILDQIDSWRKPE 333
>gi|78778690|ref|YP_396802.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. MIT 9312]
gi|78712189|gb|ABB49366.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. MIT 9312]
Length = 415
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 64/389 (16%), Positives = 131/389 (33%), Gaps = 24/389 (6%)
Query: 23 NKGEDKSCIVGGAVRDSLMNL-------SVQDIDIATTILPDRVMRIFSKTRYKV----I 71
+ K VGG +RD L++ DID+ + + K V I
Sbjct: 29 SNNNTKVAFVGGYLRDLLISKFHKKSFSKPVDIDLVIEGSSISLAKFIKKNIVNVDLCLI 88
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
Y T++I DI + R ++ + V + D RRDFTIN++ +
Sbjct: 89 KEFNLYNTVEININDYKIDIASARKEIYSAPGLNPTVNKSTIEEDLKRRDFTINSIAFEV 148
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ I + G K + I +D R++R ++ + +S +
Sbjct: 149 STRKIYDLYGGISDIKSK-KLNLLHSNSISDDPSRLIRCAKYASRLDFNISNSSLKQSQE 207
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+K +S L + + + + I + + + L++ I+
Sbjct: 208 TVRKWPWKISETHQKMIYPAALGIRIRMELAEICKHDNLTNVISIIHKWEIISILNENIK 267
Query: 252 AEQVFEWKIDSLLR---FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
++ F ++ + R +L +D + + K+F + L +FN T
Sbjct: 268 VDKRFLRGLNWIKRLKGNHMLYLLKDSEDLEKACKRFLVNNSEIKILEDYFNIKKILNTN 327
Query: 309 SIPEIK---KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ + + + + L + + L + I K
Sbjct: 328 QKNFNHFSPSSWTEFIEDRNLNDETVKLLICDGGPYWRKLFKWLFIYKFIKSKK------ 381
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
G+ + K G PGK++G + + I+
Sbjct: 382 DGETLKKEGWDPGKEMGKEIKRLRYLEID 410
>gi|318040608|ref|ZP_07972564.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
CB0101]
Length = 427
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/400 (15%), Positives = 135/400 (33%), Gaps = 20/400 (5%)
Query: 22 LNKGEDKSCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79
L ++ +VGGAVRD+L++ D+D+ P + R +G
Sbjct: 33 LAAFPHEAALVGGAVRDALLDRLGEAPDLDLVVEGDPLALCRQL----------GRRHGG 82
Query: 80 IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV 139
++ + + R + +AD RRD+TINA+ +
Sbjct: 83 SSVVLD---AERSMARLVIGGWSIDLARRDGPSLEADLHRRDYTINAMALPLADRRQLVD 139
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199
+T++ + A +L+D LR+LR R G ++ + +
Sbjct: 140 PLDGLTHLQTMQLVAVAEANLLDDPLRLLRGLRLAGQLGF-ELEPTTAGWIGQHANAIAP 198
Query: 200 LSSERIWSEINKLLEAKNPLNAI-VHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
++ ER+ +E+ KL A + + G + + +L +
Sbjct: 199 VAGERVLAELEKLAAAPGGEPWLARCLELGLLAPWRHSAWSGDEVQRLMRCSTHAAQQLG 258
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI-PEIKKLF 317
++ L + ++ ++ R+++ + +
Sbjct: 259 WSEAELSSFLPLARLANVVDAEALERLRSSRKLQKQVQILRRWQEQLGGAEPAIRVTTQP 318
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIP 376
++ +I AL + T ++ + + P P+ G + + IP
Sbjct: 319 QPERLQLHRDLEEILPALLLDWPTDVARTWLGRWRDESDRLFHPRPPIDGLSLQRELKIP 378
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
P +G +L++ QE +E L L ++ + +Q
Sbjct: 379 PSPALGELLLYLMQEQAFGRLHNREEAL-ELAQRWLTCAQ 417
>gi|183597873|ref|ZP_02959366.1| hypothetical protein PROSTU_01207 [Providencia stuartii ATCC 25827]
gi|188022633|gb|EDU60673.1| hypothetical protein PROSTU_01207 [Providencia stuartii ATCC 25827]
Length = 415
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 73/345 (21%), Positives = 134/345 (38%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L V D D P+ ++ + K P + +
Sbjct: 3 KVYLVGGAVRDELLGLPVSDRDYVVVGSTPETMLAQGFQQVGKDFPVF--------LHPQ 54
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y + D LRRD TINA+ D QG++ D G+
Sbjct: 55 THEEYALARTERKTGAGYTGFSCYSAPDVTIEDDLLRRDLTINAIAKDDQGQLTDPYNGV 114
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
+DL+ R ++ + ED LR+LR RF A Y E+ + ++ A L
Sbjct: 115 DDLKARVLRHV---SEAFAEDPLRVLRVARFAARYAEQGFHIAPETLSLMQTMTASGELT 171
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W+E K L++K+P + G +F ++ + E
Sbjct: 172 HLTAERVWAETEKALKSKSPQVYFEVLRQCGALAVLFPEIDNLFGVPAPAKWHPEIDTGI 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
+LR +S I A + + + I + + + +++ +
Sbjct: 232 HTLMVLRMAAQLSTD--VDIRFSALCHDVGKALTPKTIWPSHPHHGEAGVALIDNLCDRL 289
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A+L + + ++Q+ + W+KP
Sbjct: 290 KIPNSARELARLTARFHDKIHVINRLTAQELVQLFDGLDSWRKPE 334
>gi|253689770|ref|YP_003018960.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|259585846|sp|C6DDL7|CCA_PECCP RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|251756348|gb|ACT14424.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 414
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 68/342 (19%), Positives = 118/342 (34%), Gaps = 17/342 (4%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+ L V + D P+ ++ + K P + +
Sbjct: 2 KIYLVGGAVRDSLLGLPVTEKDWVVVGATPEDLLAQGYQQVGKDFPVFL-----HPVSHD 56
Query: 87 KYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+Y T R G + D LRRD TINA+ +QG +ID G DL
Sbjct: 57 EYALARTERKSGKGYTGFVCHAAPDVTLEQDLLRRDLTINAIARTEQGDLIDPYHGRRDL 116
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----KILS 201
N ++ + ED LR+LR RF A + ++ K L+
Sbjct: 117 ENHVLRHV---SDAFSEDPLRVLRVARFAARFAHLGFQIAEETMALMQKMAHEGELAYLT 173
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
ER+W E K L +P + + G +F ++ + E
Sbjct: 174 PERVWKETEKALGTSSPDVYFQVLRDCGALAVLFPEIDNLYGVPAPAKWHPEIDTGIHTM 233
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLFYLY 320
+ +S + ++ + + + + + + E + +
Sbjct: 234 MTVAMAARLSPEIDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEALCQRLRVP 291
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+AKL + + +L++ I W+KP
Sbjct: 292 NPIRDLAKLVAEYHDLIHTVQVLQPKTLLKLFDAIDVWRKPQ 333
>gi|148545680|ref|YP_001265782.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas putida F1]
gi|166233872|sp|A5VXI8|CCA_PSEP1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|148509738|gb|ABQ76598.1| Polynucleotide adenylyltransferase region [Pseudomonas putida F1]
Length = 368
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 73/369 (19%), Positives = 123/369 (33%), Gaps = 27/369 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGAVRD L+ V DID + ++ P + + K
Sbjct: 3 IYKVGGAVRDRLLGRPVSDIDWLVVGATVEEMLAK------GYRPVGADF--PVFLHPKT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y F + D +RRD TINA+ D+ G V D G
Sbjct: 55 GEEYALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEAGTVYDPYQGKQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS- 202
DL R ++ + ED LR+LR RF A Y ++ +
Sbjct: 115 DLDKRLLRHV---SPAFAEDPLRVLRVARFAARYAPLGFRVADETLALMRQISASGELQA 171
Query: 203 ---ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFE 257
ER W EI + L P + G +E+ ++ + S L L Q EQ
Sbjct: 172 LTAERSWKEIERALMEVQPQVFFKVLSACGALQELLPELDDSSRTLAALEQAAVHEQPLH 231
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ LLR + S + L ++ + ++ N ++ E+ + F
Sbjct: 232 VRWACLLRGLSPTSIKAVNQRLKAPRECQELAMLTGECLAQGNQALELPATALLELLQKF 291
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
+Y + + Q + + +V+ G+
Sbjct: 292 DVYRRPQRFEDFLVVCEMAARGDGEQGYP----QADYLRRAAAAARAVDVKPLVQAGLT- 346
Query: 378 GKKVGNILV 386
G+ +G L
Sbjct: 347 GQALGEALK 355
>gi|152980497|ref|YP_001354880.1| tRNA nucleotidyltransferase [Janthinobacterium sp. Marseille]
gi|166233860|sp|A6T2Y3|CCA_JANMA RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|151280574|gb|ABR88984.1| tRNA nucleotidyltransferase [Janthinobacterium sp. Marseille]
Length = 416
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 63/342 (18%), Positives = 119/342 (34%), Gaps = 19/342 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ IVGGAVRD L+ ++V+D D + P+ ++ P + + K
Sbjct: 2 KTYIVGGAVRDELLGVAVKDRDYVVVGATPEAMVA------QGYTPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYA----KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y + + D +RRD TINA+ D+ G ++D GG
Sbjct: 54 THAEYALARTERKTAPGYKGFVFHTDASVTLEEDLIRRDLTINAMAQDEDGSIVDPFGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKIL 200
DL ++ ED +RILR RF A + E + ++ + L
Sbjct: 114 RDL---ELRIFRHVSPAFAEDPVRILRIARFAARFPEFTVAAETNTLMQDMVTAGEVDAL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER+W E+ + L P + + G + I ++ + E I
Sbjct: 171 VPERVWQELARGLMEVRPSRMFEVLRDCGALQRILPELDVLWGVPQPAQYHPEIDTGVHI 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
++ + I ++ + + + + K +
Sbjct: 231 MLVIDYAAGIKADLPVRCAALLHDLGKG-VTLPDQWPRHHGHEMHSVKLVDTVSKRLKIP 289
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D +A + + I+ +L ++KP
Sbjct: 290 NDCRDLALMTAREHGNVGRALELRANTIVNLLERCDAFRKPQ 331
>gi|126173394|ref|YP_001049543.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella baltica OS155]
gi|166233876|sp|A3D1R1|CCA_SHEB5 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|125996599|gb|ABN60674.1| metal dependent phosphohydrolase [Shewanella baltica OS155]
Length = 416
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 128/344 (37%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+NL ++D D + P++++++ + K P + K
Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDYLVVGATPEQMLQLGYRQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D++G + D G+
Sbjct: 54 NQQEYALARTERKIGLGYGGFSCHASPDVTLEQDLLRRDLTINAIAQDEKGNLYDPFNGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
D+ R ++ + +ED LR+LR RF A + ++ + +
Sbjct: 114 EDINARLLRHV---SDAFVEDPLRVLRVARFAARFHALGFHIAAETLALMRQISASDELN 170
Query: 203 ----ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E++K L +P ++ G + +F ++ + + E
Sbjct: 171 ALTAERVWQEVDKSLGGPHPEVFFEVLHQCGALEVLFPEIFALFGVPQPEKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L L++ ++ + + + + + I +
Sbjct: 231 HTLMVLAQAALLTEDKSVRFAALVHDLGKALSPKEH-LPKHHGHGQKGLPLIKALCTRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L + + I+++ W+KP
Sbjct: 290 VPNETRDLALLVSDQHQNVHQAFELRAETIVKIFDKADFWRKPE 333
>gi|90580764|ref|ZP_01236567.1| putative tRNA nucleotidyltransferase [Vibrio angustum S14]
gi|90438032|gb|EAS63220.1| putative tRNA nucleotidyltransferase [Vibrio angustum S14]
Length = 409
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 117/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD+L+NL+V D D P+ ++ + P + K
Sbjct: 2 QTYLVGGAVRDTLLNLTVTDKDWVVVGTTPEAMLAAGFEQIGSDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y V + D RRD TINA+ G++ID G
Sbjct: 54 TKQEHALARTERKSGHGYTGFVCYSAPDVTLEQDLQRRDLTINAIAQAATGELIDPYHGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL ++ ++ + ED LR+LR RF A + ++ + +
Sbjct: 114 QDLHDKILRHV---SPAFSEDPLRVLRVARFAARFAHLGFTVAPETIALMQEMVISGELE 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L + +P + + G + ++ + + E
Sbjct: 171 SLTPERVWKEWEKSLSSDDPQVFLTVLRQCGALSVVMPEIDALFGVPQPEKWHPEIDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + ++ + + + + I + +
Sbjct: 231 HTLLVAKKAAELTTDKTIRFAAQVHDLGKALSPK-EDLPHHKTHCRDGIKPIKALCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +A L + +++ I W+KP
Sbjct: 290 IPNDYRDLALLVCEQHTKIHYAEEMRADTFIKIFDQIDAWRKPD 333
>gi|59801178|ref|YP_207890.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
gonorrhoeae FA 1090]
gi|293399045|ref|ZP_06643210.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Neisseria
gonorrhoeae F62]
gi|73619808|sp|Q5F8K9|CCA_NEIG1 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|59718073|gb|AAW89478.1| putative tRNA nucleotidyltransferase [Neisseria gonorrhoeae FA
1090]
gi|291610459|gb|EFF39569.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Neisseria
gonorrhoeae F62]
Length = 410
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 71/341 (20%), Positives = 127/341 (37%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + K
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A YG + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G + + +V + E
Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGALQVLLPEVDALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-PDILPRHHGHDINGVEPVREVNQRLRAPR 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 QCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|152999732|ref|YP_001365413.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella baltica OS185]
gi|166233877|sp|A6WKL1|CCA_SHEB8 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|151364350|gb|ABS07350.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella baltica OS185]
Length = 416
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 128/344 (37%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+NL ++D D + P++++++ + K P + K
Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDYLVVGATPEQMLQLGYRQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D++G + D G+
Sbjct: 54 NQQEYALARTERKIGLGYGGFSCHASPDVTLEQDLLRRDLTINAIAQDEKGNLYDPFNGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
D+ R ++ + +ED LR+LR RF A + ++ + +
Sbjct: 114 EDINARLLRHV---SDAFVEDPLRVLRVARFAARFHALGFHIAAETLALMRQISASDELN 170
Query: 203 ----ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E++K L +P ++ G + +F ++ + + E
Sbjct: 171 ALTAERVWQEVDKSLGGPHPEVFFEVLHQCGALEVLFPEIFALFGVPQPEKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L L++ ++ + + + + + I +
Sbjct: 231 HTLMVLAQAALLTEDKSVRFAALVHDLGKALSPKEH-LPKHHGHGQKGLPLIKALCTRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L + + I+++ W+KP
Sbjct: 290 VPNETRDLALLVSDQHQNVHQAFELRAETIVKIFDKADFWRKPE 333
>gi|319425518|gb|ADV53592.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella putrefaciens 200]
Length = 412
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 125/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+NL ++D D + P++++++ + K P +
Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDYMVVGATPEQMLQLGYRQVGKDFPVF--------LHPI 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D++G + D G+
Sbjct: 54 TQQEYALARTERKVGLGYGGFSCYASPDVTLEQDLLRRDLTINAIAQDEEGNLHDPFNGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL R ++ + +ED LR+LR RF A + + +
Sbjct: 114 GDLNARLLRHV---SDAFIEDPLRVLRVARFAARFHHIGFQIADSTLQLMQQIAQSGELN 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E++K L NP + G K +F ++ + + E
Sbjct: 171 ALTPERVWQEVDKTLSGSNPEVFFEVLRQCGALKVLFPELDALFGIPQPEKWHPEIDTGL 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L +++ ++ + + + + I + +
Sbjct: 231 HTLMVLAQAAILTQDKAVRFAALVHDLGKAVTPIEH-LPKHHGHGQKGLPIIKALCERLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + + I+++ W+KP
Sbjct: 290 IPNEFRDLALIVSDQHQNVHQAFKLRPETIIKIFDKADFWRKPE 333
>gi|194098678|ref|YP_002001740.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
gonorrhoeae NCCP11945]
gi|240125759|ref|ZP_04738645.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
gonorrhoeae SK-92-679]
gi|268684357|ref|ZP_06151219.1| multifunctional CCA protein [Neisseria gonorrhoeae SK-92-679]
gi|226702073|sp|B4RLV5|CCA_NEIG2 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|193933968|gb|ACF29792.1| putative tRNA nucleotidyltransferase [Neisseria gonorrhoeae
NCCP11945]
gi|268624641|gb|EEZ57041.1| multifunctional CCA protein [Neisseria gonorrhoeae SK-92-679]
Length = 410
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 71/341 (20%), Positives = 127/341 (37%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + K
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A YG + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G + + +V + E
Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGALQVLLPEVDALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-PDILPRHHGHDINGVEPVREVNQRLRAPR 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 QCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|269103522|ref|ZP_06156219.1| tRNA nucleotidyltransferase [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163420|gb|EEZ41916.1| tRNA nucleotidyltransferase [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 410
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 117/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+L+ L + D D P++++ + P + K
Sbjct: 2 QVYLVGGAVRDALLQLPIVDKDWVVVGSTPEQMLAQGFEQVGTDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D +RRD TINA+ + G +ID GG
Sbjct: 54 TKQEHALARTERKSGRGYTGFICDFTPDVTLEQDLIRRDLTINAIAQAKDGTLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL +R ++ + +ED LR+LR RF A + ++ + +
Sbjct: 114 QDLEHRILRHV---SPAFVEDPLRVLRVARFAARFAHMGFTVAAETMALMQEMVISGELA 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L ++NP + + G + + ++ + + E
Sbjct: 171 ALTPERVWKEWEKSLSSQNPEIFLTVLRQCGALQVVMPEIDALFGIPQPEKWHPEIDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I + +
Sbjct: 231 HTLLVAKQAAQLSQDKTIRFAAQLHDLGKA-LSPVEDLPHHKTHCLDGLKPIKALCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D A + ++ +++ I W+KP
Sbjct: 290 VPNDYRDCALMVCAQHTKVHHAFEMKASTFVKIFDQIDAWRKPE 333
>gi|84394161|ref|ZP_00992893.1| tRNA nucleotidyltransferase [Vibrio splendidus 12B01]
gi|84375220|gb|EAP92135.1| tRNA nucleotidyltransferase [Vibrio splendidus 12B01]
Length = 438
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 62/357 (17%), Positives = 118/357 (33%), Gaps = 22/357 (6%)
Query: 16 INILSLL-NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPT 73
+ I L + +VGGAVRD L+N+ D D P +
Sbjct: 17 LQIYDSLPKDNGLQRYLVGGAVRDKLLNIDSYDRDWVVVGSTPQEM------ENLGFTAV 70
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYA 129
+ + K + R++ + Y + D +RRD TINA+
Sbjct: 71 GKDF--PVFLHPKTKEEHALARTERKSGSGYTGFECYFAPDVSLEEDLMRRDLTINAIAQ 128
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D +G++ D G DL +R ++ + +ED LR+LR RF A N
Sbjct: 129 DDKGQLYDPYHGQKDLSDRVLRHV---SDAFVEDPLRVLRVARFAAKLHHLNFTVAPETM 185
Query: 190 SIKAKKGLK----ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ ++ L++ER+W E +K L +P + + G + ++ +
Sbjct: 186 VMMSEIVQSGELAHLTAERVWQEWHKSLSTPHPEVFLSVLKECGALAVVLPEIDALFGVP 245
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ E + + +S + + +
Sbjct: 246 QPEKWHPEIDTGIHTLMVAQQAARLSSSLPVRFAAQVHDLGKG-VTPESEWPSHKMHCHT 304
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
I ++ + + + +A L + + L+VL+ W+KP
Sbjct: 305 GLKIIKKLCERVRVPNEFRDLALLVCEQHSNIHRAGELKPTTFLKVLNKFDVWRKPD 361
>gi|270263172|ref|ZP_06191442.1| multifunctional CCA protein [Serratia odorifera 4Rx13]
gi|270042860|gb|EFA15954.1| multifunctional CCA protein [Serratia odorifera 4Rx13]
Length = 414
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 118/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+ + V D D P ++ + K P + +
Sbjct: 2 KIYLVGGAVRDSLLEIPVFDRDWVVVGASPSELLAQGYQQVGKDFPVF--------LNPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINA+ G++ID G+
Sbjct: 54 THEEYALARTERKSGQGYTGFTCYAAPDVTLEEDLQRRDLTINAIARGSDGELIDPFHGV 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+ R ++ + ED LR+LR RF A + A +
Sbjct: 114 ADLQARVLRHV---SDAFGEDPLRVLRVARFAARFAHLGFTLAPETAELMRHMARSGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E K L++++P + + +F ++ + E
Sbjct: 171 TLTAERVWKETEKALQSQSPQVYFQVLRDCDALAILFPEIDALFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S ++ + + + + + +
Sbjct: 231 HTLMTLAIAAQLSPDVDVRFAALCHDLGKGLTPQELW-PHHHGHGLTGVKLVEALCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 290 VPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPQ 333
>gi|120599846|ref|YP_964420.1| metal dependent phosphohydrolase [Shewanella sp. W3-18-1]
gi|120559939|gb|ABM25866.1| metal dependent phosphohydrolase [Shewanella sp. W3-18-1]
Length = 420
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 63/349 (18%), Positives = 125/349 (35%), Gaps = 21/349 (6%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81
K +VGGAVRDSL+NL ++D D + P++++++ + K P
Sbjct: 5 RSKSVKIYLVGGAVRDSLLNLPIKDKDYMVVGATPEQMLQLGYRQVGKDFPVF------- 57
Query: 82 IICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
+ + R++ G + D LRRD TINA+ D++G + D
Sbjct: 58 -LHPITQQEYALARTERKVGLGYGGFSCYASPDVTLEQDLLRRDLTINAIAQDEEGNLHD 116
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
G+ DL R ++ + +ED LR+LR RF A + + +
Sbjct: 117 PFNGIGDLNARLLRHV---SDAFIEDPLRVLRVARFAARFHHLGFQIADSTLQLMQQIAQ 173
Query: 198 KIL----SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
+ ER+W E++K L NP + G K +F ++ + + E
Sbjct: 174 SGELNALTPERVWQEVDKTLSGSNPEVFFEVLRQCGALKVLFPELDALFGIPQPEKWHPE 233
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313
+L +++ ++ + + + + I +
Sbjct: 234 IDTGLHTLMVLAQAAILTQDKAVRFAALVHDLGKAITPIEH-LPKHHGHGQKGLPIIKAL 292
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + + +A + + + I+++ W+KP
Sbjct: 293 CERLRIPNEFRDLALIVSDQHQNVHQAFKLRPETIIKIFDKADFWRKPE 341
>gi|254282300|ref|ZP_04957268.1| multifunctional CCA protein [gamma proteobacterium NOR51-B]
gi|219678503|gb|EED34852.1| multifunctional CCA protein [gamma proteobacterium NOR51-B]
Length = 371
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 75/393 (19%), Positives = 145/393 (36%), Gaps = 38/393 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L++ + + D + ++ + +
Sbjct: 2 QVYKVGGAVRDQLLDYAFHETDWVVVGATAEHMLE------QGFTQVGRDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + + D RRD TINA+ ++G+VID GG
Sbjct: 54 TKDEYALARTERKSGRGYHGFEVHADPSVTLEEDLQRRDLTINAMAMSEKGEVIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL+ R ++ + +ED LR+LR RF A Y N +
Sbjct: 114 RDLQARVLRHVSPH---FVEDPLRVLRVARFAARYHHLNFKVASETTDLMRTLVTEGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
LS ERIW E + L K+P + + G +++ D+ +D+L + W
Sbjct: 171 HLSVERIWVETERALAEKSPEVFFRVLDSCGALEQLIPDIGVADIDRLKNASQ------W 224
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ R+ L+S D + ++F P+ + + + + E+ +L
Sbjct: 225 TSRTECRWAALLSQLDATRAEHINRQFKTPKRVAALSAAIIKHRSSIDSNDASELLRLLK 284
Query: 319 LY----GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374
++ + AL+ ++ L+++++ ++ D+ G
Sbjct: 285 ALDALRREEPFSGFCETVAALNGHHPAAYAPAERLRLVANSAR------SISARDITNEG 338
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+ G ++G + H + I +SQE L
Sbjct: 339 L-SGPEIGAAIAHRQIAAIE-DVLVSQEGLEAR 369
>gi|304409317|ref|ZP_07390937.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella baltica OS183]
gi|307303675|ref|ZP_07583428.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella baltica BA175]
gi|304351835|gb|EFM16233.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella baltica OS183]
gi|306912573|gb|EFN42996.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella baltica BA175]
Length = 416
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 127/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+NL ++D D + P++++++ + K P + K
Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDYLVVGATPEQMLQLGYRQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D++G + D G+
Sbjct: 54 NQQEYALARTERKIGLGYGGFSCHASPDVTLEQDLLRRDLTINAIAQDEKGNLYDPFNGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
D+ R ++ + +ED LR+LR RF A + ++ + +
Sbjct: 114 EDINARLLRHV---SDAFVEDPLRVLRVARFAARFHALGFHIAAETLALMRQISASDELN 170
Query: 203 ----ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E++K L +P + G + +F ++ + + E
Sbjct: 171 ALTAERVWQEVDKSLGGPHPEVFFEVLNQCGALEVLFPEIFALFGVPQPEKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L L++ ++ + + + + + I +
Sbjct: 231 HTLMVLAQAALLTEDKSVRFAALVHDLGKALSPKEH-LPKHHGHGQKGLPLIKALCTRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L + + I+++ W+KP
Sbjct: 290 VPNETRDLALLVSDQHQNVHQAFELRAETIVKIFDKADFWRKPE 333
>gi|146292218|ref|YP_001182642.1| metal dependent phosphohydrolase [Shewanella putrefaciens CN-32]
gi|145563908|gb|ABP74843.1| metal dependent phosphohydrolase [Shewanella putrefaciens CN-32]
Length = 420
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 63/349 (18%), Positives = 125/349 (35%), Gaps = 21/349 (6%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81
K +VGGAVRDSL+NL ++D D + P++++++ + K P
Sbjct: 5 RSKSVKIYLVGGAVRDSLLNLPIKDKDYMVVGATPEQMLQLGYRQVGKDFPVF------- 57
Query: 82 IICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
+ + R++ G + D LRRD TINA+ D++G + D
Sbjct: 58 -LHPITQQEYALARTERKVGLGYGGFSCYASPDVTLEQDLLRRDLTINAIAQDEEGNLHD 116
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
G+ DL R ++ + +ED LR+LR RF A + + +
Sbjct: 117 PFNGIGDLNARLLRHV---SDAFIEDPLRVLRVARFAARFHHLGFQIADSTLQLMQQIAQ 173
Query: 198 KIL----SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
+ ER+W E++K L NP + G K +F ++ + + E
Sbjct: 174 SGELNALTPERVWQEVDKTLSGSNPEVFFEVLRQCGALKVLFPELDALFGIPQPEKWHPE 233
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313
+L +++ ++ + + + + I +
Sbjct: 234 IDTGLHTLMVLAQAAILTQDKAVRFAALVHDLGKAITPIEH-LPKHHGHGQKGLPIIKAL 292
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + + +A + + + I+++ W+KP
Sbjct: 293 CERLRIPNEFRDLALIVSDQHQNVHQAFKLRPETIIKIFDKADFWRKPE 341
>gi|91199946|emb|CAJ72988.1| unknown protein [Candidatus Kuenenia stuttgartiensis]
Length = 126
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ I I+ L ++ GG VRD +M D DIAT LP +M +F K
Sbjct: 6 NAIEIVKTLQDKGFEAFFAGGCVRDMIMRRESADYDIATNALPRDIMNLFK----KTFSV 61
Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADS 117
YG + ++ F++ T R++ +DGR+ V +
Sbjct: 62 GAQYGVVVVVKDGHNFEVATFRTEKSYSDGRHPDYVSFSTAEEYI 106
>gi|240014103|ref|ZP_04721016.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
gonorrhoeae DGI18]
gi|240112973|ref|ZP_04727463.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
gonorrhoeae MS11]
gi|240115727|ref|ZP_04729789.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
gonorrhoeae PID18]
gi|240121665|ref|ZP_04734627.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
gonorrhoeae PID24-1]
gi|268599053|ref|ZP_06133220.1| multifunctional CCA protein [Neisseria gonorrhoeae MS11]
gi|268601406|ref|ZP_06135573.1| multifunctional CCA protein [Neisseria gonorrhoeae PID18]
gi|268583184|gb|EEZ47860.1| multifunctional CCA protein [Neisseria gonorrhoeae MS11]
gi|268585537|gb|EEZ50213.1| multifunctional CCA protein [Neisseria gonorrhoeae PID18]
Length = 410
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 72/341 (21%), Positives = 128/341 (37%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + K
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A YG + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G+ K + +V + E
Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGVLKVLLPEVDALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-PDILPRHHGHDINGVEPVREVNQRLRAPR 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 QCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|325289849|ref|YP_004266030.1| tRNA cytidylyltransferase [Syntrophobotulus glycolicus DSM 8271]
gi|324965250|gb|ADY56029.1| tRNA cytidylyltransferase [Syntrophobotulus glycolicus DSM 8271]
Length = 533
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 79/358 (22%), Positives = 139/358 (38%), Gaps = 28/358 (7%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
++L +L D + IVGGAVRD ++ L+ +D+D+ T + P V + K RYKV I
Sbjct: 9 RDVLHILQNVSD-TWIVGGAVRDQILGLAARDLDLVTMLDPVSVRSVLEKHRYKVHHIGI 67
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-K 134
+GT+ + ++ DI T D + D+ RRDFTIN +Y + + +
Sbjct: 68 PFGTLTVFQDEQRIDII----------------HTDDLETDAQRRDFTINCIYQNSKTGE 111
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
+ D G DL R IK G A R ED +RILR RF I+ + ++ +
Sbjct: 112 IFDPFQGREDLEKRQIKTCGRAEDRFTEDPVRILRMIRFAHRQAF-TIEENTWKSARASL 170
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---------QEISLDQ 245
L+ + ER E+ ++L A ++ + + G + ++ Q SLD
Sbjct: 171 ALLEKAAPERTTGELVQILLADRVVDGVRLLDELGYWDRFIPELTRLKGLVQNQYHSLDV 230
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ Q + L + + + + L + F + F +
Sbjct: 231 WEHTMAVLQALPSDLLMRLAGLFHDLGKWGTASRECTLRGVLRKGAAGFFVDQFKIIGTR 290
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
K G ++ A+L + + + L + + K+
Sbjct: 291 GDKEPGRQLKHLVGQGITILGARLDNDQDTVQLKKVLSEEEDLPRGLQLLPNGKRHFL 348
>gi|221133361|ref|ZP_03559666.1| metal dependent phosphohydrolase [Glaciecola sp. HTCC2999]
Length = 378
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 66/383 (17%), Positives = 131/383 (34%), Gaps = 29/383 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD+L+ ++D D + P++++ + K P + + +
Sbjct: 2 QTYLVGGAVRDTLLKRRIKDRDYVVVGASPEQLVALGYK------PVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R + G T + D RRD TINA+ D QG +ID G
Sbjct: 54 TQEEYALARVERKVGLGYGGFSFVTDATVTLEEDLSRRDLTINAMAMDDQGNIIDPFNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL +R K + +ED LR+LR RF A Y + + K G
Sbjct: 114 ADLAHRIFKHV---SPAFVEDPLRVLRIARFMARYHQYGFTIAPETVELMKKIGHSGELA 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE--ISLDQLSQVIEAEQVF 256
S+ R+W E L P + + F + +++ L+ + +
Sbjct: 171 ALSAPRVWQETALALGEFAPEIYFSVLIDTLCLSPWFDQLSASIRNIESLALAFQHAKGL 230
Query: 257 EWK------IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
+ +L + + + + LP ++ ++ + L
Sbjct: 231 LESGEVTQDEHLAITTTLLTLGNKPQDVSAWTQLLPLPTFVQDCILLTHRHMNTMEQLDT 290
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
E ++L + + + + ++ + + + + D+
Sbjct: 291 LEAQQLLECLNQCDIHRRPQRLALMIKVLSCYEQVSDFTLNYLFLENVVQAAKSVNVQDI 350
Query: 371 VKYGIPPGKKVGNILVHCKQEWI 393
+ G G + L H + I
Sbjct: 351 IAQGYQ-GADIKTQLQHAQLAQI 372
>gi|260440461|ref|ZP_05794277.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
gonorrhoeae DGI2]
gi|291043762|ref|ZP_06569478.1| multifunctional CCA protein [Neisseria gonorrhoeae DGI2]
gi|291012225|gb|EFE04214.1| multifunctional CCA protein [Neisseria gonorrhoeae DGI2]
Length = 410
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 72/341 (21%), Positives = 128/341 (37%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + K
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A YG + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G+ K + +V + E
Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGVLKVLLPEVDALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-PDILPRHHGHDINGVEPVREVNQRLRAPR 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 QCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|239998987|ref|ZP_04718911.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
gonorrhoeae 35/02]
gi|240080662|ref|ZP_04725205.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
gonorrhoeae FA19]
gi|240118023|ref|ZP_04732085.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
gonorrhoeae PID1]
gi|240123577|ref|ZP_04736533.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
gonorrhoeae PID332]
gi|268594834|ref|ZP_06129001.1| multifunctional CCA protein [Neisseria gonorrhoeae 35/02]
gi|268596785|ref|ZP_06130952.1| multifunctional CCA protein [Neisseria gonorrhoeae FA19]
gi|268603735|ref|ZP_06137902.1| multifunctional CCA protein [Neisseria gonorrhoeae PID1]
gi|268682206|ref|ZP_06149068.1| multifunctional CCA protein [Neisseria gonorrhoeae PID332]
gi|268548223|gb|EEZ43641.1| multifunctional CCA protein [Neisseria gonorrhoeae 35/02]
gi|268550573|gb|EEZ45592.1| multifunctional CCA protein [Neisseria gonorrhoeae FA19]
gi|268587866|gb|EEZ52542.1| multifunctional CCA protein [Neisseria gonorrhoeae PID1]
gi|268622490|gb|EEZ54890.1| multifunctional CCA protein [Neisseria gonorrhoeae PID332]
gi|317164280|gb|ADV07821.1| multifunctional tRNA nucleotidyl transferase/2''''3''''-cyclic
phosphodiesterase/2''''nucleotidase/phosphatase
[Neisseria gonorrhoeae TCDC-NG08107]
Length = 410
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 72/341 (21%), Positives = 128/341 (37%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + K
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A YG + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G+ K + +V + E
Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGVLKVLLPEVDALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-PDILPRHHGHDINGVEPVREVNQRLRAPR 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 QCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|187476684|ref|YP_784707.1| tRNA CCA-pyrophosphorylase [Bordetella avium 197N]
gi|115421270|emb|CAJ47775.1| tRNA nucleotidyltransferase [Bordetella avium 197N]
Length = 355
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 18/224 (8%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
+ IVGGAVRD+L+ L D D P+ + R IP + +
Sbjct: 8 AGLNAYIVGGAVRDALLGLPAGDRDWVVVGATPEEMARR------GFIPVGGDF--PVFL 59
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYV 139
+ + R++ + Y F + D RRDFT+NA+ G++ID +
Sbjct: 60 HPRTKEEYALARTERKSGRGYKGFTFYTGSDVTLEQDLRRRDFTVNAIARAPGGELIDPL 119
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGL 197
GG DLR R + +G+A ED +RILR RF A + + +I + L + + +
Sbjct: 120 GGQADLRARCFRHVGEA---FAEDPVRILRLGRFAARFTDFDIAPETLALCRQMVEQGEV 176
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
L ER+W E+++ L P + G + +++
Sbjct: 177 DALVPERVWKELSRGLMETMPSRMLSVWARCGALARVMPQLRQW 220
>gi|56477346|ref|YP_158935.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Aromatoleum aromaticum EbN1]
gi|73619737|sp|Q5P3T0|CCA_AROAE RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|56313389|emb|CAI08034.1| tRNA adenylyltransferase [Aromatoleum aromaticum EbN1]
Length = 407
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 64/345 (18%), Positives = 119/345 (34%), Gaps = 25/345 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L VQD D PD ++ + K P + +
Sbjct: 2 RVYVVGGAVRDRLLGLPVQDHDWVVVGATPDEMLARGFRAVGKDFPVF--------LHPR 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D RRD TINA+ D+ G +ID GG
Sbjct: 54 TGEEYALARTERKSGRGYTGFTVHASPDVTLEEDLRRRDLTINAMAQDEDGTLIDPYGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200
DL NR + + ED +R+LR RF A + ++ + L+ ++ + L
Sbjct: 114 RDLENRVFRHV---SEAFAEDPVRVLRVARFAARFEGFSVAGETLALMRTMVDDGEVDHL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ER+W E+ + L P + I +V + E +
Sbjct: 171 VAERVWQELARGLMETRPSRMFAVLRECCALARILPEVDRLFGVPQPPQHHPEVDTGIHV 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+++ + + + ++ + S + +
Sbjct: 231 MAVVDHAAATAQP----LAVRWACLLHDLGKADTPVHVLPHHYGHEAKSADRARAVSERL 286
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCF---ILQVLSDIIHWKKPL 362
+ L + LA + L I+++L ++P
Sbjct: 287 KAPLECRDLAVLLAREHGILHQARALRPVTIVKLLERTDALRRPE 331
>gi|307132391|ref|YP_003884407.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic
phosphodiesterase, 2'-nucleotidase, and phosphatase
[Dickeya dadantii 3937]
gi|306529920|gb|ADM99850.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic
phosphodiesterase, 2'-nucleotidase, and phosphatase
[Dickeya dadantii 3937]
Length = 415
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 123/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ V + D P+ +++ + + P + +
Sbjct: 2 KIYLVGGAVRDGLLGRPVTERDWVVVGATPEMLLQQGYQQVGRDFPVF--------LHPE 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D RRD TINA+ D+ G++ID G
Sbjct: 54 TKEEYALARTERKSGNGYTGFTCQATPDITLEEDLQRRDLTINAIAQDEDGQLIDPYDGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y ++ L+ ++ L
Sbjct: 114 RDLQNRLLRHV---SDAFSEDPLRVLRVARFAARYAHLGFLIAEETLNLMQAMTRNGELD 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E K L ++P + + G +F ++ + E
Sbjct: 171 FLTPERVWKETEKALATQDPQVYFQVLRDCGALAVLFPEIDRLYGVPAPAQWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ L +S ++ L + + + + +
Sbjct: 231 HVMMSLAMAARLSPALDVRFATLCHDLGKG-LTPPELWPRHHGHGPAGVPLVEALCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + +L++ I W+KP
Sbjct: 290 VPNALRDLACLVAEYHDVVHTVQMLQPKTLLKLFDAIDVWRKPQ 333
>gi|310766309|gb|ADP11259.1| tRNA nucleotidyl transferase [Erwinia sp. Ejp617]
Length = 407
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 63/343 (18%), Positives = 121/343 (35%), Gaps = 21/343 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L++L ++D D P +++ + + + P +
Sbjct: 2 KTYLVGGAVRDELLDLPLKDKDWVVVGASPQQMLDLGYQQVGRDFPVF--------LHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y V + D RRD T+NA+ D G D GG
Sbjct: 54 SHEEYALARTERKSGQGYTGFVCYSAPDVTLEQDLARRDLTMNAIAQDTDGNYYDPYGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
NDL+ R ++ + ED LR+LR RF A + N + ++ L+
Sbjct: 114 NDLQRRLLRHV---SASFKEDPLRVLRVARFAARFAHLNFRIADETLALMQTMTDSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E L+ +P + + G +F ++ + E
Sbjct: 171 QLTAERVWKETESALQTPSPQVFFQVLRDCGALAVLFPELDNLYGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + + + + + +
Sbjct: 231 HTLMTLEMAARLS-PEIDIRFATLFHDVGKALTPPEKWPSHPGHGPAGVPLVAALCERLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ +A L + + HQ ++ + + W+KP
Sbjct: 290 VPNALRDLALLVTEFHDLVHTIQHQSPAQLVALFDRLDAWRKP 332
>gi|293602450|ref|ZP_06684896.1| CCA-adding enzyme [Achromobacter piechaudii ATCC 43553]
gi|292819212|gb|EFF78247.1| CCA-adding enzyme [Achromobacter piechaudii ATCC 43553]
Length = 369
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 18/221 (8%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ IVGGAVRD+L+ L D D P+ ++R IP + +
Sbjct: 9 GLQVYIVGGAVRDALLGLPPGDHDWVVVGATPEDMVRR------GFIPVGGDF--PVFLH 60
Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVG 140
+ + R++ + Y F + D RRD T+NA+ Q G+++D +
Sbjct: 61 PRTKEEYALARTERKSGRGYKGFTFYTGADVTLEEDLRRRDLTVNAIAQTQDGQLVDPLN 120
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLK 198
G+ DLR R + +G+A ED +RILR RF A + + ++ + L
Sbjct: 121 GVADLRARVFRHVGEA---FQEDPVRILRLGRFAARFDDFSVAPETLALCRAMVDAGEAD 177
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
L +ER+W E+++ L AK P + ++ G + ++Q
Sbjct: 178 ALVAERVWKELSRGLMAKKPSRMLEVLHTCGALARVMPELQ 218
>gi|148979383|ref|ZP_01815489.1| tRNA nucleotidyltransferase [Vibrionales bacterium SWAT-3]
gi|145961819|gb|EDK27112.1| tRNA nucleotidyltransferase [Vibrionales bacterium SWAT-3]
Length = 438
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 63/357 (17%), Positives = 119/357 (33%), Gaps = 22/357 (6%)
Query: 16 INILSLL-NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPT 73
+ I L + + +VGGAVRD L+N+ D D P + +
Sbjct: 17 LQIYDSLPKENGLQRYLVGGAVRDKLLNIDSYDKDWVVVGSTPQEMESL------GFTAV 70
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYA 129
+ + K + R++ + Y + D +RRD TINA+
Sbjct: 71 GKDF--PVFLHPKTKEEHALARTERKSGSGYTGFECYFAPDVSLEEDLMRRDLTINAIAQ 128
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D G + D G DL +R ++ + +ED LR+LR RF A
Sbjct: 129 DDAGNLHDPYHGQQDLSDRILRHV---SDAFVEDPLRVLRVARFTAKLHHLGFTVAPETM 185
Query: 190 SIKAKKGLK----ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
++ A L++ER+W E +K L +P + + G + ++ +
Sbjct: 186 AMMATIVESGELAHLTAERVWQEWHKSLSTPHPEVFLSVLRECGALAVVLPEIDALFGVP 245
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ E + + L+S + + + +
Sbjct: 246 QPEKWHPEIDTGIHTLMVAQQAALLSPSLPVRFAAQVHDLGKGVTPQSEW-PSHKMHCHT 304
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
I ++ + + + +A L + + L+VL+ W+KP
Sbjct: 305 GVKIIKKLCERVRVPNEFRDLALLVCEQHSNIHRAGELKPTTFLKVLNKFDVWRKPD 361
>gi|238789190|ref|ZP_04632978.1| Phosphatase [Yersinia frederiksenii ATCC 33641]
gi|238722722|gb|EEQ14374.1| Phosphatase [Yersinia frederiksenii ATCC 33641]
Length = 412
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 66/344 (19%), Positives = 122/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRDSL+NL V + D P++++ + K P +
Sbjct: 2 EIYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLAQGYQQVGKDFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D LRRD TINA+ G++ D G
Sbjct: 54 SHEEYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSNGELFDPHHGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL NR ++ + ED LR+LR RF A + S+ A
Sbjct: 114 QDLTNRVLRHV---SDAFGEDPLRVLRVARFAARFAHLGFTIAPETQSLMAAMAESGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L+ ++P + + G +F +++ + + E
Sbjct: 171 ALTPERVWKETEKALKTQSPQIYFHVLRDCGALAVLFPEIERLFGVPAPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S ++ + F + + + ++ +
Sbjct: 231 HTLMTLAIAAQLSPDVDVRFAALCHDLGKGLTPKEFW-PHHHGHGPTGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 290 VPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPE 333
>gi|163784000|ref|ZP_02178963.1| poly A polymerase [Hydrogenivirga sp. 128-5-R1-1]
gi|159880735|gb|EDP74276.1| poly A polymerase [Hydrogenivirga sp. 128-5-R1-1]
Length = 374
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 68/366 (18%), Positives = 133/366 (36%), Gaps = 19/366 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L +I + K K +VGG VRD +M DIDI ++ + F+K +
Sbjct: 20 LKDIGKIAKKLNMKVYLVGGIVRDIIMQRENLDIDIIVEGDAIKLAKEFAKKKKGKFNKF 79
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD---- 130
+ T ++ FD T R ++ V + K D RRDFTIN L +
Sbjct: 80 EEFMTAQVKVGNIKFDFATARKEIYEYPGAYPKVQKSNLKEDLYRRDFTINTLAINLTQD 139
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
G +IDY L D++N I+ + +ED +RI R RF + + +
Sbjct: 140 NFGILIDYFNSLQDIKNGKIRILHQ--LSFIEDPIRIFRALRFSGRFNFSLGKTTEKLLK 197
Query: 191 IKAKKGLKILSSERIWS-EINKLLEAKNPLNAIVHMYNGGIFKEIFL--DVQEISLDQLS 247
I + L ++ + E+N + + + MY + +I ++ E L L
Sbjct: 198 IAIDQNLIKAAAPGRLNLELNLTFNEEKVVEILNLMYKYKVLNQIIPYFEMTEERLIILE 257
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
++ + +++ + + + + L + I F F K
Sbjct: 258 KIRDYYIFLTSQLNFKVNKSSVYLLSLMYHLPVESSISILKKLHFEEAIKIFEEFFKIKN 317
Query: 308 -LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
++ + Y ++ ++ + ++ + + + I +T
Sbjct: 318 KINTGIKNSILYKILKEIKPETTLFLISYLPSEISQKILEVLNKSKERI---------IT 368
Query: 367 GDDVVK 372
G D++
Sbjct: 369 GKDLIN 374
>gi|240128281|ref|ZP_04740942.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
gonorrhoeae SK-93-1035]
gi|268686678|ref|ZP_06153540.1| multifunctional CCA protein [Neisseria gonorrhoeae SK-93-1035]
gi|268626962|gb|EEZ59362.1| multifunctional CCA protein [Neisseria gonorrhoeae SK-93-1035]
Length = 410
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 71/341 (20%), Positives = 127/341 (37%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + K
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-SIKAKKGLKILS 201
DL ++ + ED +RILR RF A YG + + + + L
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENDEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G + + +V + E
Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGALQVLLPEVDALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-PDILPRHHGHDINGVEPVREVNQRLRAPR 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 QCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|77163920|ref|YP_342445.1| polynucleotide adenylyltransferase [Nitrosococcus oceani ATCC
19707]
gi|254435627|ref|ZP_05049134.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Nitrosococcus oceani AFC27]
gi|123595046|sp|Q3JE31|CCA_NITOC RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|76882234|gb|ABA56915.1| Polynucleotide adenylyltransferase [Nitrosococcus oceani ATCC
19707]
gi|207088738|gb|EDZ66010.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Nitrosococcus oceani AFC27]
Length = 406
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 61/342 (17%), Positives = 114/342 (33%), Gaps = 22/342 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ +VGGAVRD L+ V++ D Y+ P + + +
Sbjct: 2 EVYLVGGAVRDKLLGRPVKERDYVVVGT---TPANLLAQGYR--PVGKDF--PVFLHPQT 54
Query: 88 YFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ T Y + D RRD TINA+ G ++D GG
Sbjct: 55 QEEYALARTERKTGPGYKGFEVDAAPDVTLEEDLQRRDLTINAIAEAADGSLLDPFGGQQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSS 202
DL ++ + ED +RILR RF A + K + G L
Sbjct: 115 DLARGILRHV---SPAFAEDPVRILRAARFAARFNFKVAPETLALMEAMVTAGEADHLVP 171
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
ER+W E+ + L P + G IF +++ + + E
Sbjct: 172 ERVWRELERALGESYPRRFFEILRACGALARIFPEIECLFGVPQPRRYHPEIDTGIHTLK 231
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
+L +S + ++ + + + L + +
Sbjct: 232 VLEIAAHLSSDTQVRFAALTHDLGKGQTPSHEWPHHYGHGERGVALVLTLCQ----RLRV 287
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCF---ILQVLSDIIHWKKP 361
L + +A ++N + IL++L+ + +++P
Sbjct: 288 PKAYQALAVQVARYHNLVHQAQELRPGTILKLLNRVDAFRRP 329
>gi|86148795|ref|ZP_01067063.1| tRNA nucleotidyltransferase [Vibrio sp. MED222]
gi|85833414|gb|EAQ51604.1| tRNA nucleotidyltransferase [Vibrio sp. MED222]
Length = 438
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 63/357 (17%), Positives = 119/357 (33%), Gaps = 22/357 (6%)
Query: 16 INILSLL-NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPT 73
+ I L + +VGGAVRD L+N+ D D P + +
Sbjct: 17 LQIYDSLPKDNGLQRYLVGGAVRDKLLNIDSYDRDWVVVGSTPQEMESL------GFTAV 70
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYA 129
+ + K + R++ + Y + D +RRD TINA+
Sbjct: 71 GKDF--PVFLHPKTKEEHALARTEKKSGSGYTGFECYFAPDVSLEEDLMRRDLTINAIAQ 128
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D G++ D G DL +R ++ + +ED LR+LR RF A N
Sbjct: 129 DDNGQLYDPYHGQKDLSDRILRHV---SDAFVEDPLRVLRVARFAAKLHHLNFTVASETM 185
Query: 190 SIKAKKGLK----ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ ++ L++ER+W E +K L +P + + G + ++ +
Sbjct: 186 VMMSEIVQSGELAHLTAERVWQEWHKSLSTPHPEVFLSILKECGALAVVLPEIDALFGVP 245
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ E + + L+S + + +
Sbjct: 246 QPEKWHPEIDTGIHTLMVAKQAALLSQSLPVRFAAQVHDLGKG-VTPESEWPSHKMHCHT 304
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
I ++ + + + +A L + + L+VL+ W+KP
Sbjct: 305 GLKIIKKLCERVRVPNEFRDLALLVCEQHSNIHRAGELKPTTFLKVLNKFDVWRKPD 361
>gi|119474857|ref|ZP_01615210.1| tRNA nucleotidyltransferase, putative [marine gamma proteobacterium
HTCC2143]
gi|119451060|gb|EAW32293.1| tRNA nucleotidyltransferase, putative [marine gamma proteobacterium
HTCC2143]
Length = 367
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 73/367 (19%), Positives = 129/367 (35%), Gaps = 30/367 (8%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+ + D ++++ P + + K
Sbjct: 4 YLVGGAVRDKLLGYPYVERDWVVVGATAEQLI------NLGYQPVGKDF--PVFLHPKTK 55
Query: 89 FDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ + Y + D RRD TINA+ D G +ID GG D
Sbjct: 56 EEYALARTERKSGPGYTGFDCYASPEVTLEEDLQRRDLTINAIAEDDDGTLIDPYGGQQD 115
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL---- 200
L ++ + ED LRILR RF A Y + K
Sbjct: 116 LDKGILRHV---SPAFEEDPLRILRVARFSARYAHLGFTLADETLLLMKKISASDELLAL 172
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK- 259
+ER+W E+++ L ++P V + K++ ++ E +IE +
Sbjct: 173 PAERVWKEMHRSLSERSPDIFFVTLQQCDALKKLMPELDE----SFHTIIEPLKQAAISG 228
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ ++ F +L + D + ++ PRE R I + + K + L L
Sbjct: 229 LPDVICFAILFAHIDTVETENFCQRMKAPREFRDLAILVSRFSISCKDDFSSPDQLLTLL 288
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379
+ L L L + + I Q+ + K + + + G+ GK
Sbjct: 289 ESLDPFRRPERFGLFLQSVQLLYNNDRAINQMKKSLRACKS----IDAASLAREGLK-GK 343
Query: 380 KVGNILV 386
++ L
Sbjct: 344 EIAEALR 350
>gi|52426367|ref|YP_089504.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Mannheimia
succiniciproducens MBEL55E]
gi|73619797|sp|Q65Q41|CCA_MANSM RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|52308419|gb|AAU38919.1| PcnB protein [Mannheimia succiniciproducens MBEL55E]
Length = 419
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 67/348 (19%), Positives = 129/348 (37%), Gaps = 24/348 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+NL V+D D P++++ + + + P + K
Sbjct: 2 QTYLVGGAVRDQLLNLPVKDRDWVVVGATPEQLLSLGYQQVGRDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D +RRD TINA+ D QGK ID G+
Sbjct: 54 TKEEYALARTERKSGAGYTGFICDFSPHISLEQDLIRRDLTINAIAQDNQGKFIDPYEGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
+DL+NRT++ I ED LR+LR RF A Y + + ++ A+ K
Sbjct: 114 SDLKNRTLRHI---SPAFAEDPLRVLRVARFAARYHQLDFSIAPETIALMAEITEKGELQ 170
Query: 203 ERIWSEINK----LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ + + L+ KNP + G K +F ++ + E
Sbjct: 171 QLTIERVWQETEKALKEKNPEIYFQVLLQVGALKILFPELYALYGVPNPAQYHPEIDSFL 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L+ V ++ + + ++ + + + + +
Sbjct: 231 HTMLVLQQAVRLTENTEFNKSAVRFAAICHDLGKALTPKDILPHHYGHEKAGIQPIRTLS 290
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQ----DTCFILQVLSDIIHWKKPL 362
K Y++ H+ ++++ + + W+KP
Sbjct: 291 NRLKVPTYYKELAEFTCEYHSYIHKAFELKPETVIKLFNKLDVWRKPQ 338
>gi|310830873|ref|YP_003965974.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Paenibacillus polymyxa SC2]
gi|309250340|gb|ADO59906.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Paenibacillus polymyxa SC2]
Length = 319
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 7/221 (3%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
I+ L + ++ VGG VRD L + D +IAT P+++ IF + + +
Sbjct: 8 IIEKLMEKGFEAVYVGGCVRDKLRGAAPDDYNIATNATPEQITEIFDSSLIDEVE--KNV 65
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
G + + D+ T RSD+ +V + DS RRDFTINA+ G +ID
Sbjct: 66 GVMLV----DGIDVATYRSDIYHKAGKPEVKLVGTFFQDSTRRDFTINAMAETVDGTIID 121
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
+ G DL + I+ + + HR +ED RILR A I+ L A + + L
Sbjct: 122 HHKGRQDLNKKLIRAVWNPLHRFIEDPSRILRGMYLAAKLSF-TIEKRTLQAMKDSVRLL 180
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ + +ERI + K+++ + + G K +F ++
Sbjct: 181 ETIPNERIAKILRKVMKNNCLHRFMELLMETGALKYVFPEL 221
>gi|152985385|ref|YP_001346122.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas aeruginosa PA7]
gi|166233869|sp|A6UZ87|CCA_PSEA7 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|150960543|gb|ABR82568.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa PA7]
Length = 410
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 77/413 (18%), Positives = 137/413 (33%), Gaps = 59/413 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ V DID + ++ P + + +
Sbjct: 2 QIYKVGGAVRDRLLGRPVTDIDWVVVGASSEEMLAR------GYRPVGADF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D RRD TINA+ D+QG+VID GG
Sbjct: 54 SGEEYALARTERKSGRGYGGFTFHASPDVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 ADLEARLLRHV---SPAFAEDPLRVLRVARFAARYAGLGFRVAAETLALMRQLAGSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER W EI++ L NP + +++ G E+ +V+ + E
Sbjct: 171 ALTPERSWKEISRALMEPNPEVFVQVLHDCGALAELMPEVEALFGVPQPAAHHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ S+L+ + R + + I I + F
Sbjct: 231 HVLSVLQQCARHHQPLTVRWACLLHDLGKG-LTREADWPRHIAHETRGLPLIDAINRRFR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ D +A+L H + +L++L +++P
Sbjct: 290 VPRDCQELARLVGEYHTHAHRALELRPTTLLELLQSFDVYRRPQRFEEFVAASEMDARGR 349
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
++ +V+ G+ G ++G L + +
Sbjct: 350 HGLEQRDYPQAAYLLGAAQAARAVSVKPLVEKGLK-GAELGEALKRARLAALK 401
>gi|260771906|ref|ZP_05880824.1| tRNA nucleotidyltransferase [Vibrio metschnikovii CIP 69.14]
gi|260613198|gb|EEX38399.1| tRNA nucleotidyltransferase [Vibrio metschnikovii CIP 69.14]
Length = 404
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 66/345 (19%), Positives = 118/345 (34%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L++L V D D P+++ + + K P + +
Sbjct: 2 QVYLVGGAVRDQLLSLPVHDQDWVVVGSSPEQMRQAGYQAVGKDFPVF--------LHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D RRD TINA+ D GK+ID GG
Sbjct: 54 TKQEYALARTERKTGSGYTGFACYYAPDVSLEEDLARRDLTINAIAQDNTGKLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL NR ++ + +ED LR+LR RF A + +
Sbjct: 114 RDLHNRLLRHV---SDAFIEDPLRVLRVARFAAKLAHLGFVIANETMQLMTQIAQSGELH 170
Query: 203 E----RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
RIW E +K L NP + + G I ++ + + E
Sbjct: 171 HLTAERIWQEWHKSLSTANPEVFLSTLRECGALAIILPEIDRLFGVPQPKQWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-FNCNFNQKTLSIPEIKKLF 317
+ +S ++ A+ + + + + + I + +
Sbjct: 231 HTLMVAAQAAKLS--PSIAVRFAAQVHDVGKGVTPQSEWPSHKMHCHTGVKIINALCERV 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L + + L++L + W+KP
Sbjct: 289 RIPNECKDLALLVCEQHSNIHRAAELKASTKLKILDKLDVWRKPE 333
>gi|295661733|ref|XP_002791421.1| tRNA nucleotidyltransferase [Paracoccidioides brasiliensis Pb01]
gi|226279978|gb|EEH35544.1| tRNA nucleotidyltransferase [Paracoccidioides brasiliensis Pb01]
Length = 633
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 85/479 (17%), Positives = 148/479 (30%), Gaps = 97/479 (20%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK---------------------- 65
GG VRD L+ + DID+A + +R +
Sbjct: 142 LRFAGGWVRDKLLGVESHDIDVAINSMTGERFGEGLKEYLSIPGNLRKYKKLHPSNPSVV 201
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + P + T D LR + TD + + DSLR
Sbjct: 202 DFIKLHKIEKNPERSKHLETATTRMFGLDIDFVNLRKETYTDESRNPQIEVGTPEEDSLR 261
Query: 120 RDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD T+NAL+ + ++I+ G D+ N+ I+ + +D LR+LR RF +
Sbjct: 262 RDATVNALFYNIHTELIEDFTGQGLQDMENKVIRTPMEPFQTFKDDPLRVLRLIRFASRL 321
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVH----------M 225
G I A K +S ERI EI K L +PL A+ +
Sbjct: 322 GYTIDCDTEEAMKIDAIKSALKAKISQERIGVEIEKTLRGPDPLTALQRINRLGLYDTIL 381
Query: 226 YNGGIFKEIFLDVQEISLDQLSQV------------------------IEAEQVFEWKID 261
N + E D LS + E E+ F W +
Sbjct: 382 ANHQDNVGVDTSSWEQGYDVLSLLLSNSAENGTGFEKSRQYVRDILIRNENERYFSWLLA 441
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+L + + K M + ++ ++ N
Sbjct: 442 ALAPWTTVPDPIPSKPTEPMPRATTVAKDSLRADNKAANIITAASKYHKMISNMKSSFLK 501
Query: 322 DKVM-------------------IAKLKIFLALHYNNLTHQDTCFILQVL---------S 353
D++ +L LA+ + Q+ + Q
Sbjct: 502 DEIADTPPEVRAKVGQLIRTIGRDWRLCFVLAIVREAMHGQEPHQLFQSYEKFLLYIEND 561
Query: 354 DIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
+++ + G D+V G+ G +G + + + + + S+E + LLR+
Sbjct: 562 NLLDAFSLRPLINGHDIVSALGVKTGPWMGTAMEMLIEWQLRNPEETSKEAAISELLRR 620
>gi|83590210|ref|YP_430219.1| polynucleotide adenylyltransferase region [Moorella thermoacetica
ATCC 39073]
gi|83573124|gb|ABC19676.1| Polynucleotide adenylyltransferase region [Moorella thermoacetica
ATCC 39073]
Length = 383
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 57/343 (16%), Positives = 106/343 (30%), Gaps = 14/343 (4%)
Query: 4 IVQHKWFHDSDLINILSLLNK----GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59
++ ++ + + IL+ K + +VGG RD L+ D+D+ +
Sbjct: 1 MIPYRKLFNQHQLAILARARKIAHLKGQRVYLVGGTTRDLLLGRPDVDLDLVVEGNGLLL 60
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
R ++ + + T I + D+ T R + + V D R
Sbjct: 61 ARELARQLGGRLVYHERFLTATIYWAGERVDVVTARKEYYPEPGALPEVEAATLAEDLAR 120
Query: 120 RDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
RDF+INA+ ++ D G DL I+ + +D RILR R
Sbjct: 121 RDFSINAMALPLTARDLWEIRDPFNGRADLAAGKIRVLHQ--ASFRDDPTRILRGVRLGT 178
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKL----LEAKNPLNAIVHMYNGGIF 231
+ +A G L S R + + L A++ + G+
Sbjct: 179 RLHFQLASETRELAREALAAGYLELVSPRRFWQEFILLLKESRPVAAWEALLALGWRGLP 238
Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291
DV + SL+ F+ + ++ + + R
Sbjct: 239 GSGPPDVAAGYRAEKLLRQWQWLGQHPPDASLVYFLTATANLSLAALEEVLDHLNWGRRR 298
Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
R + + P + + G + L LA
Sbjct: 299 RRVINAARVLQQGGCFGPEPGLPPGEMMTGSRPAPEALIFALA 341
>gi|254493778|ref|ZP_05106949.1| multifunctional CCA protein [Neisseria gonorrhoeae 1291]
gi|226512818|gb|EEH62163.1| multifunctional CCA protein [Neisseria gonorrhoeae 1291]
Length = 410
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 72/341 (21%), Positives = 128/341 (37%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + K
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-SIKAKKGLKILS 201
DL ++ + ED +RILR RF A YG + + + + L
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENDEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G+ K + +V + E
Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGVLKVLLPEVDALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-PDILPRHHGHDINGVEPVREVNQRLRAPR 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 QCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|33599196|ref|NP_886756.1| tRNA CCA-pyrophosphorylase [Bordetella bronchiseptica RB50]
gi|73619755|sp|Q7U391|CCA_BORBR RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|33575242|emb|CAE30705.1| tRNA nucleotidyltransferase [Bordetella bronchiseptica RB50]
Length = 364
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 18/223 (8%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
+ IVGGAVRD L+ L D D P+ + R IP + +
Sbjct: 10 AGLQVYIVGGAVRDGLLGLPAGDRDWVVVGATPEDMARR------GFIPVGGDF--PVFL 61
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYV 139
+ + R++ + Y F + D RRD T+NA+ QG+++D +
Sbjct: 62 HPRTKEEYALARTERKSGRGYKGFTFYTGADVTLEQDLQRRDLTVNAIARTPQGELVDPL 121
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GL 197
G+ D+R R ++ +G+A ED +RILR RF A +G+ +I + + + +
Sbjct: 122 DGVADVRARVLRHVGEA---FAEDPVRILRLGRFAARFGDFSIAPETMQLCRRMVEAGEA 178
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
L ER+W E+++ L A+ P + + G + ++ +
Sbjct: 179 DALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHD 221
>gi|33594921|ref|NP_882564.1| tRNA CCA-pyrophosphorylase [Bordetella parapertussis 12822]
gi|73619756|sp|Q7U367|CCA_BORPA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|33564997|emb|CAE39944.1| tRNA nucleotidyltransferase [Bordetella parapertussis]
Length = 364
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 18/223 (8%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
+ IVGGAVRD L+ L D D P+ + R IP + +
Sbjct: 10 AGLQVYIVGGAVRDGLLGLPAGDRDWVVVGATPEDMARR------GFIPVGGDF--PVFL 61
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYV 139
+ + R++ + Y F + D RRD T+NA+ QG+++D +
Sbjct: 62 HPRTKEEYALARTERKSGRGYKGFTFYTGADVTLEQDLQRRDLTVNAIARTPQGELVDPL 121
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GL 197
G+ D+R R ++ +G+A ED +RILR RF A +G+ +I + + + +
Sbjct: 122 DGVADVRARVLRHVGEA---FAEDPVRILRLGRFAARFGDFSIAPETMQLCRRMVEAGEA 178
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
L ER+W E+++ L A+ P + + G + ++ +
Sbjct: 179 DALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHD 221
>gi|318042805|ref|ZP_07974761.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
CB0101]
Length = 413
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 61/412 (14%), Positives = 136/412 (33%), Gaps = 48/412 (11%)
Query: 17 NILSLLNKG--EDKSCIVGGAVRDSLMN-------LSVQDIDIATTILP----DRVMRIF 63
+L+ L + + +VGGAVRD L++ + D+D+ +R+ +
Sbjct: 9 ELLTALVQAAEGRRLALVGGAVRDLLLHHQHRDPWRGLPDLDLVVEGRALALVERLPALL 68
Query: 64 SKTRYKVIPTSISYGTIKI---ICRKKYF--DITTLRSDLITDGRYAKVVFTRDWKADSL 118
S+GT+++ + + D+ + R + V D
Sbjct: 69 PNGSSCAFREHGSFGTVEVELRLANGDTWLLDVASARQESYASPGENPQVSLGSLDDDLA 128
Query: 119 RRDFTINALYA-----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
RRDF++NA+ ++D G DL R ++ + + +++D R+ R R+
Sbjct: 129 RRDFSVNAIALLLGTASDGVVLLDPHHGQQDLAARRLRLLHA--NSLVDDPTRLFRAARY 186
Query: 174 FAHYGEK---------NIDSDGLVASIKAKKGLKILSS---ERIWSEINKLLEAKNPLNA 221
A G + + + + R+ E+ +L+ + A
Sbjct: 187 AARLGFELDPSALEQARRVLQAWPWGWRPGSPPQPVPPALGTRLRMELELMLDREPWHEA 246
Query: 222 IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281
+ + G + +Q L+ LL ++ + +
Sbjct: 247 LDRLQAWGGLVLLDPGLQRNRRWPLALGRATRWGL-----PLLPVLIACADDPVALAQRL 301
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
R ++ + + + + + + A+ + +AL +
Sbjct: 302 QVPHRHQRWLKGLVQLRRHAAALSPDQIRLWMAAQWTEWIEHQPDAEHVVPMALACGGV- 360
Query: 342 HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
F +L + W+ T D++ G+ PG +G L + E +
Sbjct: 361 -----FRRPLLRWWLLWRHVQPATTAQDLLASGLRPGPAIGERLRQLRAERL 407
>gi|121592935|ref|YP_984831.1| metal dependent phosphohydrolase [Acidovorax sp. JS42]
gi|166233837|sp|A1W3D0|CCA_ACISJ RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|120605015|gb|ABM40755.1| metal dependent phosphohydrolase [Acidovorax sp. JS42]
Length = 425
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 56/345 (16%), Positives = 108/345 (31%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ V D D PD ++ +P + + +
Sbjct: 2 QIYMVGGAVRDRLLGRPVNDHDWVVVGATPDDMVAR------GYLPVGRDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYA----KVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGG 141
+ R++ + Y + + D RRD TINA+ A D
Sbjct: 54 TREEYALARTERKSGRGYRGFVVQTSPDVTLEEDLSRRDLTINAIAASAAWTGAEDLFDP 113
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKI 199
R+ + + ED +RILR RF A + + + + + +
Sbjct: 114 YGGARDLQARVLRHVTDSFREDPVRILRVARFAARFTDFTVAPETMQLMREMVHDGEADH 173
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L ER+W E+ + L P + + G + +V+ + E
Sbjct: 174 LVPERVWQELARGLMEPQPSRMFDVLRDCGALAVVLPEVERLWGVPQRPEYHPEVDTGVH 233
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ +L + + + + S +K +
Sbjct: 234 LMMVLDMAAHLQAPLTVRF----ACLTHDLGKGTTPHDVLPRHIGHEQRSARLLKAVCER 289
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKP 361
V +L +A + N+ ++++L +KP
Sbjct: 290 LRVPVECRELADVVAREHGNIHRSGDLGAAALVRLLERCDAIRKP 334
>gi|115380801|ref|ZP_01467667.1| polynucleotide adenyltransferase [Stigmatella aurantiaca DW4/3-1]
gi|115362192|gb|EAU61561.1| polynucleotide adenyltransferase [Stigmatella aurantiaca DW4/3-1]
Length = 398
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 73/356 (20%), Positives = 127/356 (35%), Gaps = 18/356 (5%)
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINAL 127
VIPT I +GT+ ++ + ++TT RS+ T D D RRDFTINA+
Sbjct: 41 VIPTGIQHGTVTVVIGGNHVEVTTFRSEGDYLDGRRPSSVTFERDITQDLSRRDFTINAM 100
Query: 128 YADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
D G+V +D GG+ DL+ I+ + R ED LR +R RF A G +
Sbjct: 101 AYDPVGQVLVDPFGGMEDLQAHLIRCVRSPLERFSEDGLRPMRAVRFAAVLGFTLEPATR 160
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
K ++ ER+ E KLL + + + G+ + ++ + + +
Sbjct: 161 EAIPPTLPIF-KKVALERVREEFVKLLLSPRAELGLTLLGETGLLEVFLPELAQAGEEAV 219
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
A Q +++ L + + + L +
Sbjct: 220 RLARAAAQAAPAEVEIRL---AALLADLVRGAQARDIALRLKFPTKAADTMAVLVEHAFL 276
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK------- 359
+ +V A L+ LA+ + + + +VL+ +
Sbjct: 277 ERRTGDADPALRRLLAQVGPALLEPLLAVARARVEARQRDRLPEVLALQERLRALLAAKP 336
Query: 360 ---KPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
L+G D++ GI P +VG + ++ E L LLR
Sbjct: 337 PLTPKELALSGKDIMATLGIGPSPQVGEATRFLMEAVFDAPDLNESERLKDLLRTW 392
>gi|78223488|ref|YP_385235.1| polynucleotide adenylyltransferase region [Geobacter
metallireducens GS-15]
gi|78194743|gb|ABB32510.1| Polynucleotide adenylyltransferase region [Geobacter
metallireducens GS-15]
Length = 431
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 77/438 (17%), Positives = 146/438 (33%), Gaps = 43/438 (9%)
Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK- 65
+ + L + + + +VGG +RD LM V D+DIA P+ + R F+K
Sbjct: 6 ASFLQNPFLRTLRQASASLDLQCYVVGGCLRDLLMGRGVNDVDIAVGGGPEALSRRFAKE 65
Query: 66 TRYKVIPTSISYGTIKIICRK----KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
G +++ + FD LR + D AD RD
Sbjct: 66 CGGTFFWLDQERGHSRVVIKGGAGIDTFDFAPLRGE--------------DICADLALRD 111
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FTIN+L QG V + + R A +D LR++R FRF A G
Sbjct: 112 FTINSLAVPLQGGVELFDPLKGETDIRAQLVRRCAESVFRDDPLRLVRAFRFAATLGF-R 170
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV------HMYNGGIFKEIF 235
I+++ L A + + ERI E+ ++L + +
Sbjct: 171 IETETLAAITTHAPLIANSAGERIRDELFQVLCMPGTGSVFRTMGDAGLLCVLFGLSPSQ 230
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI-------------LSMA 282
+ ++D++ V+++ + + Q ++ +
Sbjct: 231 VYPAAEAMDRVEAVVQSLSQLGDETAEKGCLRLQEQIQGGMTVLSLTKLAAFLTVTEADL 290
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
+ ++ TL++ E Y + L L H
Sbjct: 291 PAAADRLKLGKTAGQLVEKLCRADTLALAERLDTVSAYTLFNACDPAGLELPLLLLARGH 350
Query: 343 QDTCFILQVLSDIIHWKKPL---FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQ 398
++ +H P L+G ++++ +PP K VG+ ++ +
Sbjct: 351 ITESRCRELARYYLHCHIPRGGNLLLSGAEIMELLSVPPCKMVGDAHELLREAQCTGQVR 410
Query: 399 LSQEDLHHLLRKLIASSQ 416
E L +KL+ +++
Sbjct: 411 TGAEASVFLRKKLLTTNE 428
>gi|294341121|emb|CAZ89522.1| Multifunctional CCA protein [Includes: CCA-adding enzyme (tRNA
nucleotidyltransferase) (tRNA
adenylyl-/cytidylyl-transferase) (tRNA
CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase;
2',3'-cyclic phosphodiesterase; Phosphatase] [Thiomonas
sp. 3As]
Length = 443
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 64/346 (18%), Positives = 122/346 (35%), Gaps = 25/346 (7%)
Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
+S +VGGAVRD+L+ D D P +++ +P + +
Sbjct: 31 GRSYVVGGAVRDALLGRPHGDRDWVAVGATPQQMIDA------GFLPVGRDF--PVFLHP 82
Query: 86 KKYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141
+ + + R++ T Y V + D LRRD TINA+ G +ID GG
Sbjct: 83 QTHEEYALARTERKTAPGYRGFVVQAAPEVTLEEDLLRRDLTINAMARAADGTLIDPYGG 142
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKGLKI 199
DL+ R ++ + ED +RILR RF A +G+ ++ + + + + +
Sbjct: 143 QRDLQARVLRHV---SAAFAEDPVRILRLARFAARFGDFSVAPETMDLMRHMVHAGEVDA 199
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L ER+W E+ + L P + + G + +V + E
Sbjct: 200 LVPERVWQELARGLMEPQPQRLFAVLRDCGALARLLPEVDRLWGVPQRADYHPEIDTGVH 259
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ +L+ V + + + + S+ ++
Sbjct: 260 VMLVLQAAVALDAP----LAVRWACLMHDLGKGTTPKDVLPRHIGHEQRSVALAAEVARR 315
Query: 320 YGDKVMIAKLKIFLALHYNNLTH---QDTCFILQVLSDIIHWKKPL 362
A+L +A + N+ L++L ++P
Sbjct: 316 LRVPTDCAELAAVVAAEHGNIHRCLGLGAEATLRLLQRCDALRRPE 361
>gi|218708444|ref|YP_002416065.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Vibrio
splendidus LGP32]
gi|218321463|emb|CAV17415.1| Multifunctional CCA protein [Vibrio splendidus LGP32]
Length = 438
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 63/357 (17%), Positives = 120/357 (33%), Gaps = 22/357 (6%)
Query: 16 INILSLL-NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPT 73
+ I L + +VGGAVRD L+N+ D D P + +
Sbjct: 17 LQIYDSLPKDNGLQRYLVGGAVRDKLLNIDSYDRDWVVVGSTPQEMESL------GFTAV 70
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYA 129
+ + K + R++ + Y + D +RRD TINA+
Sbjct: 71 GKDF--PVFLHPKTKEEHALARTEKKSGSGYTGFECYFAPDVSLEEDLMRRDLTINAIAQ 128
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D +G++ D G DL +R ++ + +ED LR+LR RF A N
Sbjct: 129 DDKGQLYDPYHGQKDLSDRILRHV---SDAFVEDPLRVLRVARFAAKLHYLNFTVASETM 185
Query: 190 SIKAKKGLK----ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ ++ L++ER+W E +K L +P + + G + ++ +
Sbjct: 186 VMMSEIVQSGELAHLTAERVWQEWHKSLSTPHPEVFLSILKECGALAVVLPEIDALFGVP 245
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ E + + L+S + + +
Sbjct: 246 QPEKWHPEIDTGIHTLMVAQQAALLSQSLPVRFAAQVHDLGKG-VTPESEWPSHKMHCHT 304
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
I ++ + + + +A L + + L+VL+ W+KP
Sbjct: 305 GLNIIKKLCERVRVPNEFRDLALLVCEQHSNIHRAGELKPTTFLKVLNKFDVWRKPD 361
>gi|217969133|ref|YP_002354367.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Thauera
sp. MZ1T]
gi|217506460|gb|ACK53471.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thauera sp. MZ1T]
Length = 408
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 60/342 (17%), Positives = 114/342 (33%), Gaps = 19/342 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD+L+ L V+D D P+ ++ P + +
Sbjct: 2 QAYVVGGAVRDALLGLPVKDRDWVVVGSTPEEMLAR------GFRPVGRDF--PVFLHPH 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D LRRD TINA+ + G++ID GG
Sbjct: 54 TNEEYALARTERKSGHGYTGFVCHASPEVTLEEDLLRRDLTINAIARAEDGRLIDPCGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKIL 200
DL R + + ED LRILR RF A + + + + L + L
Sbjct: 114 RDLAARVFRHV---SPAFAEDPLRILRVARFSARFTDFELAPETLELMRAMVVAGEVDHL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ER+W E+ + L P I + G + ++ + + E +
Sbjct: 171 VAERVWQELARGLMEARPSRMIRVLRACGALARLLPELDRLFGIPQPEKYHPEIDTGEHV 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+L + L+ + E+ +
Sbjct: 231 LMVLDHAAAADEPLAVRWACLLHDLGKGDTPA-HLLPHHYGHEAASARRAREVSERLKAP 289
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D +A++ +++++ ++P
Sbjct: 290 ADCRDLAEMVAREHGILARAHELRAETMVKLIERCDGLRRPQ 331
>gi|119509884|ref|ZP_01629027.1| Polynucleotide adenylyltransferase region [Nodularia spumigena
CCY9414]
gi|119465493|gb|EAW46387.1| Polynucleotide adenylyltransferase region [Nodularia spumigena
CCY9414]
Length = 425
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 67/415 (16%), Positives = 137/415 (33%), Gaps = 49/415 (11%)
Query: 29 SCIVGGAVRDSLMN--LSVQDIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKIICR 85
+ IVGGAVRD+L+ D+D V + ++ + + +++
Sbjct: 27 AYIVGGAVRDALLGRTREYLDLDFIIPSGAVGVAQAIARHYQAGFVLLDPQRQIARVVFP 86
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLND 144
+ D + D RRDFTINA+ + ++ID + G D
Sbjct: 87 EATVDFA--------------QQEGDSLETDLHRRDFTINAIAYNPHTAEIIDPLQGRAD 132
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
L ++ + A+ + +D LR++R +R A I+ D + +++ER
Sbjct: 133 LEQGILRMVSPAN--LKDDPLRLMRAYRQAAQLDF-TIEPDTDKTIQSLALQIIEVAAER 189
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL- 263
+ EIN LL + + F + S ++L++V + L
Sbjct: 190 VRVEINYLLANPPGTFWLKKAAENNLLASFFPNATPQSWEKLAKVDTVAALITQNYPQLS 249
Query: 264 -----------------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN--CNFN 304
+ + + + + + R + +
Sbjct: 250 TELQQYVRDTVKTTWLGIAKLACLVHPSSEVAEIELQALTYSRAEIKAVTTALKLVQQLK 309
Query: 305 QKTLSIPEIKKLFYLYGD------KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+S+ E F G+ + + + A+ + I + L+
Sbjct: 310 SANMSVREQYFFFQEAGNVFAATIVLALVDNNLVSAMSGDKSLRVYAPLISRYLNPDDLV 369
Query: 359 KKPLFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
P ++G+++ + I P K+G +L + E L R L+
Sbjct: 370 AHPTKLVSGNELIIALNISPSPKLGELLTEIAVAQAEGKIS-TPEQAIALARNLL 423
>gi|238760050|ref|ZP_04621201.1| Phosphatase [Yersinia aldovae ATCC 35236]
gi|238701737|gb|EEP94303.1| Phosphatase [Yersinia aldovae ATCC 35236]
Length = 412
Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats.
Identities = 66/344 (19%), Positives = 123/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+NL+V + D P++++ + K P +
Sbjct: 2 KIYLVGGAVRDSLLNLTVTEQDWVVVGATPEQLLAQGYQQVGKDFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D LRRD TINA+ G++ D G
Sbjct: 54 SHEEYALARTERKSGSGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSADGQLFDPYHGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL NR ++ + ED LR+LR RF A + S+
Sbjct: 114 QDLENRVLRHV---SDAFGEDPLRVLRVARFAARFAHLGFSVAAETQSLMTTMAQSGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L+ ++P + + G +F +++ + + E
Sbjct: 171 ALTPERVWKETEKALKTQSPQIYFQVLRDCGALAVLFPEIERLFGVPAPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + ++ + F + + + ++ +
Sbjct: 231 HTLMTLTIAAQLSPEVDVRFAALCHDLGKGLTPKEFW-PHHHGHGPAGVKLVQQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 290 VPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPE 333
>gi|123500935|ref|XP_001327963.1| polyA polymerase family protein [Trichomonas vaginalis G3]
gi|121910900|gb|EAY15740.1| polyA polymerase family protein [Trichomonas vaginalis G3]
Length = 454
Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats.
Identities = 85/416 (20%), Positives = 164/416 (39%), Gaps = 38/416 (9%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTIL-----PDRVMRIFSKTRYKVIPT------SISY 77
+ IVGG VRD L+ DID + +++ ++ SK + + S
Sbjct: 42 ARIVGGWVRDKLLGSHSDDIDFSIEGTDGLTFANKIKKVASKAEFPDLVVMANPDQSAHI 101
Query: 78 GTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKV 135
G+ K+ + + Y DI LR D + V+ + D++RRD TIN+++ + KV
Sbjct: 102 GSAKVYLTPEFYIDICGLRWDDYSTDSRIPVITVGTPQQDAIRRDVTINSIFLNINTFKV 161
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
D+ G+ DL NR ++ A L+D LRILR FRF A Y + A+ +
Sbjct: 162 EDFTNGIPDLENRLLRTPQPAGQSFLDDPLRILRIFRFGARYDFNLHEDIIPSAASARSE 221
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL---SQVIEA 252
+++ER EI K LE + + G+F+ +F + S+D +V +
Sbjct: 222 YEVKVTAERANLEITKALEGPLAYKYVTWIAEAGMFQSVFDPSKSFSIDPFEAAKRVKLS 281
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSI--------------LSMAKKFSLPREIRYFLISF 298
E+ + ++L + I ++ + E+ +
Sbjct: 282 ERNLTEEKSTVLLASIFQPLMTAPKIKDTVRKNQMVPAVEFAVLRGMKYQAEVVSACVKI 341
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGD----KVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
N K+ S + + + ++ L L + + + + L +
Sbjct: 342 LNGAEKVKSFSDLNRVDVGHFVMEVGPMWPLVQYLLFEPNLIISFINNLKPFIAKENLGE 401
Query: 355 IIHWKKPLFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
KPL G+ + GI PG ++G+++ + + +++ + H+ +
Sbjct: 402 AY-LMKPLM--RGNQLAQALGIKPGPQMGDLIKQMIDWQLENPDGTAEQYIQHIKK 454
>gi|156335502|ref|XP_001619604.1| hypothetical protein NEMVEDRAFT_v1g224026 [Nematostella vectensis]
gi|156203123|gb|EDO27504.1| predicted protein [Nematostella vectensis]
Length = 508
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 62/411 (15%), Positives = 147/411 (35%), Gaps = 54/411 (13%)
Query: 46 QDIDIATTILPDRVMRIFSKT--RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGR 103
+D+D+ + ++ + +YGT + + + R + T+
Sbjct: 82 KDVDVVAVGSGIELAEKVAELLPNKPKVQVFKTYGTAMLRYKDIEVEFVGARKESYTEET 141
Query: 104 YAKVVFTRDWKADSLRRDFTINALYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHR 159
V + D RRDFTINAL K ++D G+NDL+++ I+ + +
Sbjct: 142 RNPEVSEGTLQDDQNRRDFTINALALSLNKKDFGLLLDPFDGINDLQSKIIRTPLEPNIT 201
Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219
+D LR++R RF + I+ + L A K + LKI++ ERI E+NK++ + P
Sbjct: 202 YSDDPLRMMRAIRFASQLNFI-IEKESLEAISKNAERLKIITRERIVEELNKIMLSTKPS 260
Query: 220 NAIVHMYNGGIFKEIFLDV-----------QEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
+ + + G+ ++I ++ Q+ + + + + + D LR+
Sbjct: 261 VGFLLLESTGLLQQILPELIALKGVEEVEGQKHKDNFYHTLEVVDNIAKNTNDVWLRWAA 320
Query: 269 LISWQDKKSILSMA----KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324
L+ K F + ++ + + + L +
Sbjct: 321 LLHDIGKAPTKKFHKKQGWTFHAHEFVGSKMVFKLFKRLKMPLNNKMKFVQKMVLLSSRP 380
Query: 325 MI------------------AKLKIFLALHYNNLTHQDTCFILQVLSDII---------- 356
++ + + L ++T ++ + +
Sbjct: 381 IVLASEVTDAAVRRLIFDAGNDIDALMTLCEADITTKNPTKFKRYHKNFELVREKIKEVE 440
Query: 357 ---HWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED 403
+ P++G+ +++ + + P +++G + K ++ +
Sbjct: 441 ERDRVRNFQPPISGELIMETFNLEPCREIGQLKEAIKNAILDGVIPNEYKA 491
>gi|296136944|ref|YP_003644186.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thiomonas intermedia K12]
gi|295797066|gb|ADG31856.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thiomonas intermedia K12]
Length = 422
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 63/346 (18%), Positives = 123/346 (35%), Gaps = 25/346 (7%)
Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
+S +VGGAVRD+L+ D D P +++ +P + +
Sbjct: 10 GRSFVVGGAVRDALLGRPHGDRDWVVVGATPQQMIDA------GFLPVGRDF--PVFLHP 61
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWK----ADSLRRDFTINALYADQQGKVIDYVGG 141
+ + + R++ T Y V + D LRRD TINA+ G +ID GG
Sbjct: 62 QTHEEFALARTERKTAPGYRGFVVQAAPEVTLGEDLLRRDLTINAMARAADGTLIDPYGG 121
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKGLKI 199
DL+ R ++ + ED +RILR RF A +G+ ++ + + + + +
Sbjct: 122 QRDLQARVLRHV---SAAFAEDPVRILRLARFAARFGDFSVAPETMDLMRHMVHAGEVDA 178
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L ER+W E+ + L P + G + ++ + E
Sbjct: 179 LVPERVWQELARGLMEPQPQRLFAVLRECGALARLLPELDRLWGVPQRADYHPEIDTGVH 238
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ +L+ V + ++ + + + S+ ++
Sbjct: 239 VMLVLQAAVALDAP----LVVRWACLMHDLGKGTTPVDVLPRHIGHEQRSVALAAEVARR 294
Query: 320 YGDKVMIAKLKIFLALHYNNLTH---QDTCFILQVLSDIIHWKKPL 362
A+L +A + N+ L++L ++P
Sbjct: 295 LRVPTDCAELAAVVAAEHGNIHRCLGFGAEATLRLLQRCDALRRPE 340
>gi|89075906|ref|ZP_01162281.1| putative tRNA nucleotidyltransferase [Photobacterium sp. SKA34]
gi|89048347|gb|EAR53925.1| putative tRNA nucleotidyltransferase [Photobacterium sp. SKA34]
Length = 409
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 60/344 (17%), Positives = 117/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD+L+NL+V D D P+ ++ + P + K
Sbjct: 2 QTYLVGGAVRDTLLNLTVTDKDWVVVGTTPEAMLAAGFEQIGSDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y V + D RRD TINA+ G++ID G
Sbjct: 54 TKQEHALARTERKSGHGYTGFVCYSAPDVTLEQDLQRRDLTINAIAQTPTGELIDPYYGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL ++ ++ + ED LR+LR RF A + ++ + +
Sbjct: 114 QDLHDKILRHV---SPAFSEDPLRVLRVARFAARFAHLGFTVAPETIALMQEMVISGELE 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L + +P I + G + ++ + + E
Sbjct: 171 SLTPERVWKEWEKSLSSDDPQVFITVLRQCGALSVVMPEIDALFGVPQPEKWHPEIDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + ++ + + + + I + +
Sbjct: 231 HTLLVAKKAAELTTDKTIRFAAQVHDLGKALSPK-EDLPHHKTHCRDGIKPIKILCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +A L + +++ I W+KP
Sbjct: 290 IPNDYRDLALLVCEQHTKIHYAEEMRADTFVKIFDQIDAWRKPD 333
>gi|238793671|ref|ZP_04637294.1| Phosphatase [Yersinia intermedia ATCC 29909]
gi|238727086|gb|EEQ18617.1| Phosphatase [Yersinia intermedia ATCC 29909]
Length = 412
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 68/344 (19%), Positives = 124/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+NL V + D P++++ + K P +
Sbjct: 2 KIYLVGGAVRDSLLNLPVTEQDWVVVGCTPEQLLTQGYQQVGKDFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D LRRD TINA+ G++ID G
Sbjct: 54 SHEEYALARTERKSGAGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSADGELIDPYHGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL NR ++ + ED LR+LR RF A + S+ A
Sbjct: 114 QDLENRVLRHV---SDAFGEDPLRVLRVARFAARFAHLGFSIATETQSLMAAMAQSGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L+ ++P + + G +F +++ + + E
Sbjct: 171 ALTPERVWKETEKALKTQSPQIYFQVLRDCGALVVLFPEIERLFGVPAPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + ++ + F + + + ++ +
Sbjct: 231 HTLMTLAIAAQLSPEVDIRFAALCHDLGKGLTPKEFW-PHHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 290 VPNPIRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPE 333
>gi|91069902|gb|ABE10831.1| tRNA nucleotidyltransferase [uncultured Prochlorococcus marinus
clone ASNC2150]
Length = 415
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 59/389 (15%), Positives = 129/389 (33%), Gaps = 24/389 (6%)
Query: 23 NKGEDKSCIVGGAVRDSLMNL-------SVQDIDIATTILPDRVMRIFSKTRYKV----I 71
+ K VGG +RD L++ DID+ + + K V I
Sbjct: 29 SNDNAKVAFVGGYLRDLLISKFHKKSFSKPIDIDLVIEGSSISLAKFIKKNIVNVDLCLI 88
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
Y T++I DI + R ++ + V + D RRDFTIN++ +
Sbjct: 89 KEFNLYNTVEININDYKIDIASARKEIYSAPGLNPTVNKSTIEEDLKRRDFTINSIAFEV 148
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ I + G + + I +D R++R ++ + ++ +
Sbjct: 149 STRKIYDLYGGISDIKSK-RLNLLHSNSISDDPSRLIRCAKYASRLDFNISNNSLKQSQE 207
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
++ S L + + + + I + + + L++ I+
Sbjct: 208 TVRQWPWKSSETHQKMIYPPALGIRIRMELAEICKHDNLTNVISIIHKWKIISILNENIK 267
Query: 252 AEQVFEWKIDSLLR---FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
++ F ++ + + +L +D + + K+F + L + N T
Sbjct: 268 VDKRFLRGLNWIKKLKGNHMLYLLKDSEDLEKACKRFLINNSEIKILEDYINIKKILNTN 327
Query: 309 SIPEIK---KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ + + + + L + + L + I K
Sbjct: 328 QKNFNHFSPSSWTEFIEDRNLNDETVKLLICDGGPYWHNLFKWLFIYKFIKSKK------ 381
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
G+ + K G PGK++G + + I+
Sbjct: 382 DGETLKKEGWDPGKEMGKEIKRLRYLEID 410
>gi|119504977|ref|ZP_01627054.1| tRNA nucleotidyltransferase, putative [marine gamma proteobacterium
HTCC2080]
gi|119459263|gb|EAW40361.1| tRNA nucleotidyltransferase, putative [marine gamma proteobacterium
HTCC2080]
Length = 372
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 69/387 (17%), Positives = 127/387 (32%), Gaps = 32/387 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGAVRD L+ + D P ++ + + P + +
Sbjct: 2 KIYRVGGAVRDELLGYPHSETDWVVVGGTPQALVDQGFRQVGRDFPVF--------LHPE 53
Query: 87 KYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + + D RRD TINA+ D G ++D GG
Sbjct: 54 TQEEYALARTERKSGFGYHGFEVHAAPSVTLEEDLTRRDLTINAMAMDDDGVLVDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL + ++ + +ED LR+LR RF A Y + + +
Sbjct: 114 RDLEAKCLRHVSPH---FVEDPLRVLRVARFAARYYALGFTVAEETLDLMSTIVAQGELG 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-LDQLSQVIEAEQVFE 257
L++ERIW E + L ++P + G + V S +++LS+ + +
Sbjct: 171 HLATERIWVETERALGEQHPEIYFETLRQCGAMATLMPAVAVTSGIERLSRAAQFTNRTD 230
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ LL + + +F E + + ++ L
Sbjct: 231 CRWAILLSELPSNQARATSEARKAPNQFRDLAERLTTWRPQTKQALRDPSECMSLLEGLD 290
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
L + + AL N +C LQ + + + +++ G+
Sbjct: 291 ALRRPEPFDGFCEAAAALESNTSAKHPSCIALQQAKEAANT------VKAQTLLETGLT- 343
Query: 378 GKKVGNILVH----CKQEWINSSFQLS 400
G +G L + F
Sbjct: 344 GPALGKALRESRVAAIAAVLTKDFVND 370
>gi|238782843|ref|ZP_04626872.1| Phosphatase [Yersinia bercovieri ATCC 43970]
gi|238716266|gb|EEQ08249.1| Phosphatase [Yersinia bercovieri ATCC 43970]
Length = 412
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 122/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+L+ L V + D P++++ + K P +
Sbjct: 2 EIYLVGGAVRDNLLGLPVTERDWVVVGAAPEQLLAQGYQQVGKDFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D LRRD TINA+ G++ID G
Sbjct: 54 SHEEYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARRDNGELIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL NR ++ + ED LR+LR RF A + S+ A
Sbjct: 114 QDLENRLLRHV---SEAFGEDPLRVLRVARFAARFAHLGFTVAPETQSLMAAMAQSGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L+ +NP + + G +F ++ + + E
Sbjct: 171 ALTPERVWKETEKALKTQNPQIYFQVLRDCGALAVLFPEIDRLFGVPAPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++ + ++ + F + + + ++ +
Sbjct: 231 HTLMTLAIAAQLTPEVDIRFAALCHDLGKGLTPKEFW-PHHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 290 VPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPE 333
>gi|332162994|ref|YP_004299571.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325667224|gb|ADZ43868.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330862251|emb|CBX72412.1| multifunctional CCA protein [Yersinia enterocolitica W22703]
Length = 412
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 123/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+NL + + D P++++ + K P +
Sbjct: 2 KIYLVGGAVRDSLLNLPITEQDWVVVGATPEQLLAQGYQQVGKDFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D LRRD TINA+ +G++ D G
Sbjct: 54 THEEYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSEGELFDPYNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
D+ R ++ + ED LR+LR RF A + S+ A
Sbjct: 114 QDIEKRVLRHV---SDAFGEDPLRVLRVARFAARFAHLGFTVASETQSLMAAMAKSGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L+ ++P + + G +F +++ + + E
Sbjct: 171 ALTPERVWKETEKALKTQSPQIYFQVLRDCGALAVLFPEIERLFGVPAPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + ++ + F + + + ++ +
Sbjct: 231 HTLMTLAMAAQLSPEVDVRFAALCHDLGKGLTPKEFW-PHHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 290 VPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPE 333
>gi|300115235|ref|YP_003761810.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Nitrosococcus watsonii C-113]
gi|299541172|gb|ADJ29489.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Nitrosococcus watsonii C-113]
Length = 403
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 61/342 (17%), Positives = 116/342 (33%), Gaps = 22/342 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
++ +VGGAVRD L+ V++ D Y+ P + + +
Sbjct: 2 ETYLVGGAVRDKLLGRPVKERDYVVVGT---TPAHLLAQGYR--PVGKDF--PVFLHPQT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ T Y + D RRD TINA+ G ++D GG
Sbjct: 55 QEEYALARTERKTGPGYKGFEVHATPDVTLEEDLQRRDLTINAIAEAADGSLLDPFGGQQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSS 202
DL ++ + ED +RILR RF A + K + G L
Sbjct: 115 DLARGILRHV---SPAFAEDPVRILRAARFAARFDFKVAPETLALMEAMVTAGEADHLVP 171
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
ER+W E+ + L P + G IF +++ + + E
Sbjct: 172 ERVWKELERALGESYPRRFFEILRACGALARIFPEIECLFGIPQPRRYHPEIDTGIHTLK 231
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
+L +S + ++ + + ++ L + +
Sbjct: 232 VLEIATHLSSDTQVRFAALTHDLGKGQTPPHEWPHHYDHGERGVALVLTLCQ----RLRI 287
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCF---ILQVLSDIIHWKKP 361
L + +A ++N + IL++L+ + +++P
Sbjct: 288 PKAYQALAVQVARYHNLVHQAQELRPGTILKLLNRVDAFRRP 329
>gi|134096102|ref|YP_001101177.1| tRNA nucleotidyl transferase [Herminiimonas arsenicoxydans]
gi|166233859|sp|A4G969|CCA_HERAR RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|133740005|emb|CAL63056.1| Multifunctional CCA protein [Includes: CCA-adding enzyme (tRNA
nucleotidyltransferase) (tRNA
adenylyl-/cytidylyl-transferase) (tRNA
CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase; 2',
3'-cyclic phosphodiesterase; Phosphatase] [Herminiimonas
arsenicoxydans]
Length = 414
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 56/346 (16%), Positives = 120/346 (34%), Gaps = 19/346 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K IVGGAVRD L+ ++V+D D + P++++ P + +
Sbjct: 2 KIYIVGGAVRDELLGVAVKDRDYVVVGATPEQMIA------QNYTPVGKDF--PVFLHPV 53
Query: 87 KYFDITTLRSDLITDGRYA----KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y + D +RRD T+NA+ D G++ID GG
Sbjct: 54 THEEYALARTERKTAPGYKGFVFHTDAGVTLEEDLIRRDLTVNAMAKDADGRIIDPFGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK--KGLKIL 200
DL + + + ED +RILR RF A + + ++ ++ + L
Sbjct: 114 RDLEQKIFRHV---SSAFAEDPVRILRVARFAARFPQFSVAAETNALMQAMVAAGEVDAL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER W E+ + L P + + G + + ++ + + E +
Sbjct: 171 VPERTWQELARGLMEVQPSRMFAVLRDCGALQRMLPELDALWGVPQPEKYHPEIDTGVHV 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
++ + ++ + + + Q + + + +
Sbjct: 231 MMVVDHAAQQNLALPIRCAALFHDLGKG-VTPPEMWPRHHGHEMQSAKLVETVCQRLKIP 289
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
D ++ + + I+ + ++KP +
Sbjct: 290 NDCRDLSVMTAREHGNIGRALELRAATIVTLFERCDAFRKPQRFID 335
>gi|240016538|ref|ZP_04723078.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
gonorrhoeae FA6140]
Length = 410
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 70/341 (20%), Positives = 128/341 (37%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + K
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-SIKAKKGLKILS 201
DL ++ + ED +RILR RF A YG + + + + L
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENDEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G+ K + +V + E
Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGVLKVLLPEVDALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-PDILPRHHGHDINGVEPVREVNQRLRAPR 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + ++ VL +++P
Sbjct: 290 QCTELAELVCRWHIIFHQVEKLRSKTVIDVLKKTDAFRRPE 330
>gi|159902870|ref|YP_001550214.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. MIT 9211]
gi|159888046|gb|ABX08260.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. MIT 9211]
Length = 421
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 74/414 (17%), Positives = 145/414 (35%), Gaps = 38/414 (9%)
Query: 14 DLINILSLLNKGED--KSCIVGGAVRDSLMN---LSV----QDIDIATTILPDRVMR--- 61
D + +L K + IVGG +RD +++ +DID+ +
Sbjct: 18 DFLTVLRRAAKNVGIKRVAIVGGILRDHIIHSFEKEPLTKFEDIDLVIEGPVKELATQIR 77
Query: 62 -IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
I + + S S+ TI++ FD +T R++ + VF + + D +RR
Sbjct: 78 LILGSDKVIITRESSSFKTIQLKIGDTLFDFSTARTESYSAPGENPQVFNCNIEEDLIRR 137
Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
DF INA+ + ID G D+ R +KF+ +D RI+R R+ +
Sbjct: 138 DFPINAMALELINNTFIDIFQGREDISKRKLKFMHSKSVS--DDPTRIIRGARYASRLNF 195
Query: 180 -------KNIDSDGLVASIKAKKGLKILSSE-----RIWSEINKLLEAKNPLNAIVHMYN 227
K I S + + + + R+ E+ LLE + A+ + +
Sbjct: 196 ILDDESLKQIKSTIKLWPWDWRPDEPLSKAPPALSTRLRMELELLLEKEPWEQALQLLQD 255
Query: 228 GGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287
+ +Q I + ++++A Q I L + + +
Sbjct: 256 WEALSLLDTQIQ-IDKNWHQRILKASQ---LGIPPLTALVAGAKDPCSLAARLQLGNYQQ 311
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ I + Q + + + + I +A+ +T
Sbjct: 312 TCLSQAINIKEYFTYLAQSKEYLSWLPSNWCNAIESRNWYPESIGIAISL------ETPL 365
Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401
L + W+K +T +++ G G K+G L + E ++ S+
Sbjct: 366 WEYCLRWLSEWRKIESKITAKELLTQGWTEGPKLGKELQRLRAETLDKGISNSE 419
>gi|212633983|ref|YP_002310508.1| polynucleotide adenylyltransferase:Metal-dependent
phosphohydrolase, HD subdomain-containing protein
[Shewanella piezotolerans WP3]
gi|226702084|sp|B8CJF9|CCA_SHEPW RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|212555467|gb|ACJ27921.1| Polynucleotide adenylyltransferase:Metal-dependent
phosphohydrolase, HD subdomain protein [Shewanella
piezotolerans WP3]
Length = 408
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 66/343 (19%), Positives = 119/343 (34%), Gaps = 21/343 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+ L ++D D + P++++ K K P + K
Sbjct: 2 KIYLVGGAVRDSLLELPIKDRDYMVVGATPEQMLAQGYKQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ T Y + D LRRD TINA+ D QG D G+
Sbjct: 54 TQQEYALARTERKTAAGYGGFSVDAAPNVTLEQDLLRRDLTINAIAQDDQGNRYDPFNGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL R ++ + +ED LR+LR RF A + + ++ K
Sbjct: 114 ADLNARLLRHV---SDAFIEDPLRVLRVARFAARFHSLGFNIAAETMALMTKISQSGELE 170
Query: 203 ERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ K L + P + G +F ++ + + E
Sbjct: 171 ALTAERVYIELDKSLTSDAPQVFFSVLKECGALAVLFPEIDALFGIPQPEQWHPEIDSGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L +S + S+ + + + + + I + + F
Sbjct: 231 HTLMVLEQAAKLSNDNAVRFASLVHDLGKALSPK-ASLPKHHGHGQKGLPLIKALCERFR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + +A L + +N I+++ W+KP
Sbjct: 290 VPNEYRDLALLVSDQHQNIHNAHELRADTIVKLFDKADFWRKP 332
>gi|121608440|ref|YP_996247.1| metal dependent phosphohydrolase [Verminephrobacter eiseniae
EF01-2]
gi|166233889|sp|A1WHX2|CCA_VEREI RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|121553080|gb|ABM57229.1| metal dependent phosphohydrolase [Verminephrobacter eiseniae
EF01-2]
Length = 413
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 54/343 (15%), Positives = 107/343 (31%), Gaps = 17/343 (4%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ V D D P+++ +P + +
Sbjct: 2 QIYMVGGAVRDRLLGRPVHDRDWVVVGATPEQMRA------QGYLPVGRDF--PVFLHPA 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWK----ADSLRRDFTINALYADQQ-GKVIDYVGG 141
+ R++ + Y V + D RRD TINA+ +
Sbjct: 54 TREEYALARTERKSGRGYRGFVVHSAPEVTLQEDLSRRDLTINAIATSADASGAGCLIDP 113
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKI 199
+ R+ + + ED +RILR RF A + + + L +
Sbjct: 114 HHGARDIAARVLRHVSTAFREDPVRILRVARFAARLPDFTVAPETLQLMREMVAHGETDH 173
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L +ER+W E+ + L A+ P + G + + +V+ + S E
Sbjct: 174 LVAERVWQELARGLMAEKPSRMFEVLRACGALERLLPEVERLWGVPQSAEHHPEIDTGAH 233
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ +L + +A + + + + + + +
Sbjct: 234 LLLVLDMAARLQAPLAVRFACLAHDLGKGSTPADM-LPRHIGHETRGAELLKHLAERLRV 292
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D A H + ++++L + P
Sbjct: 293 PADCRATADKVAREHGHIHCSNALSAAALVRLLERCDALRLPQ 335
>gi|22127403|ref|NP_670826.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
pestis KIM 10]
gi|45442728|ref|NP_994267.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
pestis biovar Microtus str. 91001]
gi|108809131|ref|YP_653047.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
pestis Antiqua]
gi|108810675|ref|YP_646442.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
pestis Nepal516]
gi|145597744|ref|YP_001161820.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
pestis Pestoides F]
gi|150260318|ref|ZP_01917046.1| tRNA nucleotidyltransferase [Yersinia pestis CA88-4125]
gi|162420327|ref|YP_001604913.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
pestis Angola]
gi|165924844|ref|ZP_02220676.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165939885|ref|ZP_02228424.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str.
IP275]
gi|166009040|ref|ZP_02229938.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166212241|ref|ZP_02238276.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167398461|ref|ZP_02303985.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167418788|ref|ZP_02310541.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167425148|ref|ZP_02316901.1| multifunctional CCA protein [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167470407|ref|ZP_02335111.1| multifunctional CCA protein [Yersinia pestis FV-1]
gi|218927843|ref|YP_002345718.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
pestis CO92]
gi|229837329|ref|ZP_04457492.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic
phosphodiesterase, 2'-nucleotidase, and phosphatase
[Yersinia pestis Pestoides A]
gi|229840541|ref|ZP_04460700.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic
phosphodiesterase, 2'-nucleotidase, and phosphatase
[Yersinia pestis biovar Orientalis str. PEXU2]
gi|229842911|ref|ZP_04463063.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic
phosphodiesterase, 2'-nucleotidase, and phosphatase
[Yersinia pestis biovar Orientalis str. India 195]
gi|229900869|ref|ZP_04515993.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic
phosphodiesterase, 2'-nucleotidase, and phosphatase
[Yersinia pestis Nepal516]
gi|270487756|ref|ZP_06204830.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
pestis KIM D27]
gi|294502720|ref|YP_003566782.1| tRNA nucleotidyltransferase [Yersinia pestis Z176003]
gi|73619909|sp|Q8ZI64|CCA_YERPE RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|122382757|sp|Q1C370|CCA_YERPA RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|122385242|sp|Q1CMD8|CCA_YERPN RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|166233892|sp|A4THT5|CCA_YERPP RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702097|sp|A9R7D9|CCA_YERPG RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|21960492|gb|AAM87077.1|AE013956_2 tRNA nucleotidyl transferase [Yersinia pestis KIM 10]
gi|45437594|gb|AAS63144.1| tRNA nucleotidyltransferase [Yersinia pestis biovar Microtus str.
91001]
gi|108774323|gb|ABG16842.1| tRNA nucleotidyltransferase [Yersinia pestis Nepal516]
gi|108781044|gb|ABG15102.1| tRNA nucleotidyltransferase [Yersinia pestis Antiqua]
gi|115346454|emb|CAL19327.1| tRNA nucleotidyltransferase [Yersinia pestis CO92]
gi|145209440|gb|ABP38847.1| tRNA nucleotidyltransferase [Yersinia pestis Pestoides F]
gi|149289726|gb|EDM39803.1| tRNA nucleotidyltransferase [Yersinia pestis CA88-4125]
gi|162353142|gb|ABX87090.1| multifunctional CCA protein [Yersinia pestis Angola]
gi|165912196|gb|EDR30834.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str.
IP275]
gi|165923044|gb|EDR40195.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165992379|gb|EDR44680.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166206987|gb|EDR51467.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962782|gb|EDR58803.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167050965|gb|EDR62373.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167055911|gb|EDR65692.1| multifunctional CCA protein [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229682208|gb|EEO78300.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic
phosphodiesterase, 2'-nucleotidase, and phosphatase
[Yersinia pestis Nepal516]
gi|229690178|gb|EEO82235.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic
phosphodiesterase, 2'-nucleotidase, and phosphatase
[Yersinia pestis biovar Orientalis str. India 195]
gi|229696907|gb|EEO86954.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic
phosphodiesterase, 2'-nucleotidase, and phosphatase
[Yersinia pestis biovar Orientalis str. PEXU2]
gi|229705452|gb|EEO91462.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic
phosphodiesterase, 2'-nucleotidase, and phosphatase
[Yersinia pestis Pestoides A]
gi|262364697|gb|ACY61254.1| tRNA nucleotidyltransferase [Yersinia pestis D182038]
gi|270336260|gb|EFA47037.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
pestis KIM D27]
gi|294353179|gb|ADE63520.1| tRNA nucleotidyltransferase [Yersinia pestis Z176003]
gi|320016790|gb|ADW00362.1| Methenyltetrahydrofolate cyclohydrolase [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 412
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 64/343 (18%), Positives = 122/343 (35%), Gaps = 21/343 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRDSL+NL V + D P++++++ + K P +
Sbjct: 3 IYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLKLGYQQVGKDFPVF--------LHPVS 54
Query: 88 YFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ + R++ + Y + D LRRD T+NA+ G+ ID G
Sbjct: 55 HEEYALARTERKSGQGYTGFTCYAAPDVTLEDDLLRRDLTVNAIARSADGEFIDPYHGKQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL--- 200
DL NR ++ + ED LR+LR RF A + S+ +
Sbjct: 115 DLENRVLRHV---SDAFGEDPLRVLRVARFAARFAYLGFTIAPETMSLMSNMAQSGELSA 171
Query: 201 -SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
+ ER+W E K L+ ++P + + G +F +++ + + E
Sbjct: 172 LTPERVWKETEKALKTQSPHVYFQVLRDCGALAVLFPEIERLFGVPAPEKWHPEIDTGIH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
L +S + ++ + + ++ + +
Sbjct: 232 TLMTLAIAAQLSPEVDIRFAALCHDLGKGLTPKEHWPHHHGHGPA-GVKLVEQLCQRLRI 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+AKL + + +L++ + I W+KP
Sbjct: 291 PNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFNAIDVWRKPE 333
>gi|22298257|ref|NP_681504.1| polyA polymerase [Thermosynechococcus elongatus BP-1]
gi|22294436|dbj|BAC08266.1| polyA polymerase [Thermosynechococcus elongatus BP-1]
Length = 426
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 68/416 (16%), Positives = 136/416 (32%), Gaps = 46/416 (11%)
Query: 30 CIVGGAVRDSLMNLSV--QDIDIATTILPDRV-MRIFSKTRYKVIPTSISYGTIKIICRK 86
+VGGAVRD+L+ + D+D + ++ K + + G +++ +
Sbjct: 24 YLVGGAVRDALLGRTTLYPDLDFIVPRDAIGLSKKLADKYKAGWVLLDRDRGIARLVFPQ 83
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDL 145
DI D RDF INA+ D ++D +GGL D+
Sbjct: 84 TTVDIA--------------QRHGETLLNDLSDRDFRINAIAYDIHHHHIVDPLGGLLDV 129
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+ R I ++ + + D LR+LR +R A + I + L+ +++ER+
Sbjct: 130 QRRQIHYVAPEN--LAADPLRLLRAYRQAAQL-QLTITPETRQVIQTLAPQLRRVAAERV 186
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS--- 262
E++ LL A + + G+ V E + + F +
Sbjct: 187 RVELSYLLSAVEGAAQVTLAFRDGVLAVWLPSVTEERMTHYHALESTLANFPFPALWPAL 246
Query: 263 -------------------LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN--C 301
L + + + + + +
Sbjct: 247 TKSIAATNAPGEPQRRTLAALAKLTCLVNASDRQAAEELTALTYTTDEIRIVQVLCRLLS 306
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
++ ++ FYL+ + LAL + L P
Sbjct: 307 HWLVPLQQPLNREQAFYLFRAAGRYFPAFVALALSRGIPKGHLVPLVKGWLDPQDAIAHP 366
Query: 362 LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ G D+V+ + + PG +VG +L + + L ++ + L S++
Sbjct: 367 PQLVRGADLVEVFHVSPGPRVGELLQAVEAAQARGEISDRPQALAYVAQLLKGSTK 422
>gi|332706570|ref|ZP_08426631.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lyngbya majuscula
3L]
gi|332354454|gb|EGJ33933.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lyngbya majuscula
3L]
Length = 425
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 71/433 (16%), Positives = 150/433 (34%), Gaps = 51/433 (11%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSV--QDIDIATTILPDRV 59
++ W + +L+ +C+VGGAVRD+++N QD+D R
Sbjct: 6 TALSPQNWPFNWELLP---------SDACLVGGAVRDAVINRQSVTQDLDFVLPTKAVRS 56
Query: 60 M-RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
++ + + + +++ D +AD
Sbjct: 57 ASKLARRYKAGFVVLDAQRQIARVVFGNATVDFA--------------QQDGDSLEADLH 102
Query: 119 RRDFTINALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRD+TINA+ + + ID + G+ D R I+ + + + +D LR+LR +R A
Sbjct: 103 RRDYTINAIAFNPHTKEFIDPLQGILDCRKGIIRMVSPEN--LQKDPLRLLRGYRQAAQL 160
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
G + ID K L +++ER+ +E+ LL++ + + + + + D
Sbjct: 161 GFQ-IDPATQSVIRKLAPLLSKIAAERVRTELGYLLKSPQGVPWLKAAWEDNVLRPWLPD 219
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSL---LRFIVLISWQDKKS--------------ILS 280
L+ ++ V ++ V L L+ V +
Sbjct: 220 ATAEGLEHMAAVDQSAVVLAETWPKLGVELKLQVTKHSLSLLNLAKLANLLSSIPAVAEQ 279
Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFYLYGDKVMIAKLKIFLALHY 337
R ++ + + +++ ++ + + + + LA+
Sbjct: 280 QLLALKYSRVQTRIVVRAIQHLPQLLSYTTAKDIPLREQYFFFLNVGAVFPVVALLAVAR 339
Query: 338 NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSS 396
I L+ P +TG D++K + P K+G +L + I +
Sbjct: 340 GMAVDTIAPLIEHYLNPNDQVAHPTPLVTGKDLIKSLKLSPSSKIGELLTEIQIARIEGN 399
Query: 397 FQLSQEDLHHLLR 409
+ L +
Sbjct: 400 INSIKGALEFAAK 412
>gi|332305449|ref|YP_004433300.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Glaciecola agarilytica 4H-3-7+YE-5]
gi|332172778|gb|AEE22032.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Glaciecola agarilytica 4H-3-7+YE-5]
Length = 405
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 71/343 (20%), Positives = 116/343 (33%), Gaps = 19/343 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ +VGGAVRD L+ V+D D + + ++ + + K
Sbjct: 2 QVYLVGGAVRDKLLGRPVKDQDWVVVGASE--ADMLAQ---GYQQVGKDF--PVFLHPKT 54
Query: 88 YFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ T YA + + D LRRD T+NA+ D +G +ID G
Sbjct: 55 QQEYALARTERKTGQGYAGFECDTSTSVTLEQDLLRRDLTVNAMAMDDKGAIIDPFNGQQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----KI 199
DL+NR ++ + ED LR+LR RF A Y ++ A
Sbjct: 115 DLKNRVLRHV---SDAFEEDPLRVLRVARFAARYASYGFTIADETKALMANITRSGELSH 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
LS+ER+W E K L P + G K F ++ + E
Sbjct: 172 LSAERVWVETAKSLLEDTPQVYFETLRECGALKVWFPELDCLWGIPNPAKWHPEIDTGVH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+L V +S + ++ L + I + + +
Sbjct: 232 SMMVLEQSVRVSNKLSVRFAALVHDLGKG-LTDPALWPSHKGHEKLGLAPINALCERVKV 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D +A L H ++ I L W+KP
Sbjct: 291 PNDCRDLALLMSEFHSHVHHAFKLKPATINDFLDKCDVWRKPE 333
>gi|326389216|ref|ZP_08210784.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter ethanolicus JW 200]
gi|325994579|gb|EGD53003.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter ethanolicus JW 200]
Length = 467
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 88/477 (18%), Positives = 166/477 (34%), Gaps = 100/477 (20%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSI 75
++ L K IVGG +RD ++N +D D +++ ++ + K +P
Sbjct: 6 KLIRKLGKEAYNLYIVGGYIRDRILNREAKDYDFVVQEDAEKIAKLAAEKLGGTFVPFMA 65
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY-----AD 130
GT +++ + D T LR + D D RDFT+NA+
Sbjct: 66 EKGTYRVVVGDEILDFTNLRGE--------------DIYIDLAHRDFTMNAMAIKLTDYF 111
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +ID GG+ D++NR IK +G ED LR LR RF A Y + +ID
Sbjct: 112 EFEYIIDPFGGMMDIKNRKIKHVGVM--TFKEDPLRALRAVRFAATY-KFDIDEGTKAKI 168
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN-------------GGIFKEIFLD 237
+ +K ++ ERI +EI +L+ KN + M + + +
Sbjct: 169 REEAALIKQVAPERIMNEIFIILKEKNSHKYLRMMEDLKLMENIFEEVAKMKEVGKCYYH 228
Query: 238 VQEISLDQLSQVIEAEQVFE-----------------------WKIDSLLRFIVLISWQD 274
+ + L V E E + K+ +++ L
Sbjct: 229 LTNAWIHSLKTVEEYENIINSMRFPKDVYDIVSEYLDRKLSSDNKVKDIIKLGALFHDIG 288
Query: 275 KKS----------------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL--SI 310
K + +A + +P++ L + +
Sbjct: 289 KPESIYIDTENRVHFYNHETKGAEIVKKIASRMKMPKKESSLLKKLVLYHMKPLMYYVNG 348
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLA-----------LHYNNLTHQDTCFILQVLS---DII 356
K + + ++ + I L L + T +I ++L +
Sbjct: 349 GPTNKSLFRFFSELKDDSIAILLLSQADFTATRLNLGKEEEIPKFTDYITKLLKRYVEFK 408
Query: 357 HWKKPLF-PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+KPL PL ++ + + GKK+G IL ++ Q ++ + + ++
Sbjct: 409 ETEKPLLSPLD--IIINFDVKDGKKLGQILYEIRKNRFYGEIQDKEDAVEFVKERMK 463
>gi|325928427|ref|ZP_08189618.1| tRNA nucleotidyltransferase/poly(A) polymerase [Xanthomonas
perforans 91-118]
gi|325541144|gb|EGD12695.1| tRNA nucleotidyltransferase/poly(A) polymerase [Xanthomonas
perforans 91-118]
Length = 410
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 61/406 (15%), Positives = 124/406 (30%), Gaps = 57/406 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD+L+ D D P + + +
Sbjct: 2 KIYLVGGAVRDALLEQPAGDRDWVVVG-----ADQAQMEAQGFKPVGKDF--PVFLHPRS 54
Query: 88 YFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGL 142
+ R++ + Y + + D LRRDFTINA+ D++ ++ D G
Sbjct: 55 GEEYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAIARDEETGELFDPYNGA 114
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ R ++ +G A +ED +R+LR RF A A++
Sbjct: 115 RDLQARVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTVAAETAALMRDMAASGELD 171
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E+ + L P + +++ + I +V + E
Sbjct: 172 SLVPERVWQELRRALSCAQPSAFLRTLHDADALRVILPEVDALYGVPQRAEFHPEVDTGI 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + ++ D + + + + + +
Sbjct: 232 HQEMVSDMAARLAPGDALVGFAALTHDLGKALTPPEEWPRHVMHEQRGVAPLQALCERLK 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ D +A + L+ + L + ++L +++P
Sbjct: 292 VPQDFRQLAIIACREHLNVHRLAELRDRTLHELLVRCDAFRRPERIAQLALVCEADKRGR 351
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVH 387
+ ++ G+ G ++G L
Sbjct: 352 LCSEEAAYPQGEALKRLHAAALAINARNLAAEGLQ-GPQIGEALTK 396
>gi|149927059|ref|ZP_01915317.1| Polynucleotide adenylyltransferase region:Metal-dependent
phosphohydrolase, HD subdomain [Limnobacter sp. MED105]
gi|149824280|gb|EDM83500.1| Polynucleotide adenylyltransferase region:Metal-dependent
phosphohydrolase, HD subdomain [Limnobacter sp. MED105]
Length = 393
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 56/293 (19%), Positives = 109/293 (37%), Gaps = 19/293 (6%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRV 59
M+ + +H + ++ L K +VGGAVRD+LM + D D D +
Sbjct: 1 MLPMARHPELQGFQVDPVIEQLPNH-VKVYVVGGAVRDALMGRASSDRDWVVVGATVDHM 59
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA----KVVFTRDWKA 115
+ P + + + + + R++ + Y + +
Sbjct: 60 LAA------GFTPVGSDF--PVFLHPRTHEEYALARTERKSGHGYKGFTFHAEPSVTLEE 111
Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
D RRDFT+NA+ + +G +ID GL DL N+ ++ + ED LR+LR RF A
Sbjct: 112 DLARRDFTVNAMAMNAEGGLIDPFQGLADLENKCMRHV---SPAFSEDPLRVLRLARFLA 168
Query: 176 HYGEKNIDSDGLVASIKAK--KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
+ + ++ + + + + LK L ER+++E+ K + + P I + + E
Sbjct: 169 RFLDFSVAEETMDLCRELQASGELKHLVPERVYAELTKGMGEEKPSRMIKLISKLNGWGE 228
Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286
+ + + + L+ A +
Sbjct: 229 LAPACSVPFSSFDKPEYDCLNSLSGAEARWVYSLGFFLSLAHIKALAKAWRLP 281
>gi|51597709|ref|YP_071900.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
pseudotuberculosis IP 32953]
gi|153947017|ref|YP_001399553.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
pseudotuberculosis IP 31758]
gi|170022892|ref|YP_001719397.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
pseudotuberculosis YPIII]
gi|186896853|ref|YP_001873965.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
pseudotuberculosis PB1/+]
gi|73619910|sp|Q665U9|CCA_YERPS RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|167006460|sp|A7FE75|CCA_YERP3 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702096|sp|B2K2H9|CCA_YERPB RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702098|sp|B1JM22|CCA_YERPY RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|51590991|emb|CAH22649.1| tRNA nucleotidyltransferase [Yersinia pseudotuberculosis IP 32953]
gi|152958512|gb|ABS45973.1| multifunctional CCA protein [Yersinia pseudotuberculosis IP 31758]
gi|169749426|gb|ACA66944.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Yersinia pseudotuberculosis YPIII]
gi|186699879|gb|ACC90508.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Yersinia pseudotuberculosis PB1/+]
Length = 412
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 64/343 (18%), Positives = 122/343 (35%), Gaps = 21/343 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRDSL+NL V + D P++++++ + K P +
Sbjct: 3 IYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLKLGYQQVGKDFPVF--------LHPVS 54
Query: 88 YFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ + R++ + Y + D LRRD T+NA+ G+ ID G
Sbjct: 55 HEEYALARTERKSGQGYTGFTCYAAPDVTLEDDLLRRDLTVNAIARSADGEFIDPYHGKQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL--- 200
DL NR ++ + ED LR+LR RF A + S+ +
Sbjct: 115 DLENRVLRHV---SDAFGEDPLRVLRVARFAARFAYLGFTIAPETMSLMSNMAQSGELSA 171
Query: 201 -SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
+ ER+W E K L+ ++P + + G +F +++ + + E
Sbjct: 172 LTPERVWKETEKALKTQSPHVYFQVLRDCGALAVLFPEIERLFGVPAPEKWHPEIDTGIH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
L +S + ++ + + ++ + +
Sbjct: 232 TLMTLAIAAQLSPEVDIRFAALCHDLGKGLTPKEHWPHHHGHGPA-GVKLVEQLCQRLRI 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+AKL + + +L++ + I W+KP
Sbjct: 291 PNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFNAIDVWRKPE 333
>gi|124268482|ref|YP_001022486.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1]
gi|124261257|gb|ABM96251.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1]
Length = 434
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 118/344 (34%), Gaps = 25/344 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ ++ +D D P +++ +P + + +
Sbjct: 22 QVFVVGGAVRDELLGIAGRDRDWVVVGSTPQQMLDA------GFLPVGRDF--PVFLHPQ 73
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + RS+ T Y F + D RRD TINA+ G +ID GG
Sbjct: 74 THEEYALARSERKTGPGYHGFSFHAAPDVTLEQDLARRDLTINAIARAADGTLIDPYGGQ 133
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG--LKIL 200
DL R ++ + ED +RILR RF A + ++ + L G + L
Sbjct: 134 RDLAARVLRHV---SPAFAEDPVRILRVARFAARFDGFSVAPETLALMRDMVDGGEVDHL 190
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER+W E+ + L P + G + + +V + E +
Sbjct: 191 VPERVWQELARGLMEPRPSRMFELLRECGALQRLLPEVARLWGVPQRAEHHPEVDTGVHL 250
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+L + + + S+ ++ L
Sbjct: 251 MMVLDMSARLDAPLTVRY----ACLGHDLGKGSTPAELLPRHIGHEQRSVALLRGLNERL 306
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKP 361
+ +L +A + N+ ++++L ++KP
Sbjct: 307 RVPIDCRELADVVAREHGNVHRSGEFGAAALVRLLERCDAFRKP 350
>gi|254498742|ref|ZP_05111458.1| tRNA nucleotidyltransferase [Legionella drancourtii LLAP12]
gi|254352070|gb|EET10889.1| tRNA nucleotidyltransferase [Legionella drancourtii LLAP12]
Length = 425
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 70/345 (20%), Positives = 132/345 (38%), Gaps = 21/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+NL V++ D P+++++ K + + +
Sbjct: 17 KVYLVGGAVRDQLLNLPVKERDWVVVGASPEQLLK------QKFRQVGRDF--PVFLHPQ 68
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D RRD TINA+ D+QG +ID G
Sbjct: 69 TNEEYALARTERKSAPGYYGFACDFNRSVTLEEDLARRDLTINAMAMDEQGVLIDPYQGQ 128
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198
DL NR ++ I ED +R+LR RF A + ++ L+ S+ + L
Sbjct: 129 RDLANRVLRHI---SPAFAEDPVRVLRLARFAARFHYLGFTVAEETRSLMYSMVTQGELA 185
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L +ER+W E + LE KNP I+ + + + I ++Q + E
Sbjct: 186 HLVAERVWQEWQRSLEEKNPEQFIITLRSCDALRVILPELQALFGVPNPYRYHHEIDSGV 245
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L+ ++ ++ S + + + I +
Sbjct: 246 HTLLVLQSAAALTTDPIIRFAALTHDLGKATSPMSNWPSHY-GHEARGVPIIESLCLRLR 304
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
+ + +A + L + L I+++L +++P
Sbjct: 305 IPNEYRTLATVVSRFHLMIHRLLELRADTIVRLLEQAYAFRRPQL 349
>gi|90020374|ref|YP_526201.1| peptidase M, neutral zinc metallopeptidases, zinc-binding site
[Saccharophagus degradans 2-40]
gi|89949974|gb|ABD79989.1| Polynucleotide adenylyltransferase region [Saccharophagus degradans
2-40]
Length = 429
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 77/415 (18%), Positives = 140/415 (33%), Gaps = 65/415 (15%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
+ + +VGGAVRD+L+ L V++ D P++++ +P + +
Sbjct: 17 YKMQIFLVGGAVRDTLLQLEVKERDWVVVGATPEQLIA------QNFVPVGKDF--PVFL 68
Query: 84 CRKKYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYV 139
K + R++ + Y + D +RRD TINA+ D+QG + D
Sbjct: 69 HPKTKEEYALARTERKSGAGYTGFECYAAQDVTLEEDLIRRDLTINAIAQDEQGNLYDPY 128
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKK 195
G DL NR ++ + ED +RILR RF A Y + + S+ A
Sbjct: 129 NGQADLNNRILRHV---SDAFTEDPVRILRIARFAARYHKLGFSIAPTTLMLMKSMVADG 185
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L ER+W E+++ LE NP + + G + ++ L + Q +
Sbjct: 186 EVDHLVPERVWKEMSRALEEDNPEIFFQVLRHCGALARVLPELDR--LFGVPQPPQHHPE 243
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-FNCNFNQKTLSIPEIK 314
+ + +LL + A L + + + + I +
Sbjct: 244 IDTGVHALLSLRAAVRVTQSLPARFAALVHDLGKGVTPKEKWPSHHGHETTGLAPIKALC 303
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL------------ 362
K + +A L H + +L+ L + +KP
Sbjct: 304 KRLAVPNPCRDLALLTAEFHTHSHRAFELRPDTLLKTLERLDALRKPERFEEFLIACMCD 363
Query: 363 -------------------------FPLTGDDVVKYGIPP---GKKVGNILVHCK 389
+T DV+ P G ++G L +
Sbjct: 364 SRGRTDLENVAYPQREYLAGAFTCISNVTAKDVLAQ--QPDLRGPEIGEQLRALR 416
>gi|322831346|ref|YP_004211373.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Rahnella sp. Y9602]
gi|321166547|gb|ADW72246.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Rahnella sp. Y9602]
Length = 411
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 118/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRDSL+NL V + D P+ ++ + K P +
Sbjct: 2 EIYLVGGAVRDSLLNLPVSEHDWVVVGATPEYMLENGYQQVGKDFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D +RRD TINA+ G++ D G
Sbjct: 54 THDEYALARTERKSGSGYNGFTCYAAPDVTLEQDLMRRDLTINAIAKSNDGELFDPYHGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
D+ R ++ + ED LR+LR RF A + + ++ +
Sbjct: 114 RDIEQRLLRHV---SDAFGEDPLRVLRVARFAARFAHLDFTVAPETQALMQQMAESGELE 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L+ ++P + + G K +F ++ + E
Sbjct: 171 ALTPERVWKETEKALQTQDPQVYFQVLRDCGALKVLFPEIDALFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L+ I D S + + + E+ +
Sbjct: 231 HTLMTLK-IASTLTPDVDVRFSALCHDLGKALTPPQFWPAHHGHGPAGVKLVEELCQRLK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 290 VPTHIRDLAKLVAEFHDLIHTVNKLRPETLLKLFDTIDVWRKPQ 333
>gi|238762459|ref|ZP_04623430.1| Phosphatase [Yersinia kristensenii ATCC 33638]
gi|238699444|gb|EEP92190.1| Phosphatase [Yersinia kristensenii ATCC 33638]
Length = 412
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 66/344 (19%), Positives = 124/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRDSL+NL V + D P++++ + K P +
Sbjct: 2 EIYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLAQGYQQVGKDFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D LRRD TINA+ +G++ D G
Sbjct: 54 SHEEYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSEGELFDPYNGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL NR ++ + ED LR+LR RF A + S+ A
Sbjct: 114 QDLENRVLRHV---SDAFGEDPLRVLRVARFAARFAHLGFTVAPETQSLMASMAKSGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L+ ++P + + G +F +++ + + E
Sbjct: 171 ALTPERVWKETEKALKTQSPQIYFQVLRDCGALAVLFPEIERLFGVPAPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + ++ + F + + + ++ +
Sbjct: 231 HTLMTLAIAAQLSPEVDVRFAALCHDLGKGLTPKEFW-PHHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 290 VPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDTIDVWRKPE 333
>gi|167038519|ref|YP_001666097.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167038738|ref|YP_001661723.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter sp. X514]
gi|256751389|ref|ZP_05492268.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter ethanolicus CCSD1]
gi|300913677|ref|ZP_07130994.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter sp. X561]
gi|307723308|ref|YP_003903059.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter sp. X513]
gi|320116915|ref|YP_004187074.1| metal dependent phosphohydrolase [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166852978|gb|ABY91387.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter sp. X514]
gi|166857353|gb|ABY95761.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|256749771|gb|EEU62796.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter ethanolicus CCSD1]
gi|300890362|gb|EFK85507.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter sp. X561]
gi|307580369|gb|ADN53768.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter sp. X513]
gi|319930006|gb|ADV80691.1| metal dependent phosphohydrolase [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 467
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 88/477 (18%), Positives = 164/477 (34%), Gaps = 100/477 (20%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI-FSKTRYKVIPTSI 75
++ L K IVGG +RD ++N +D D +++ ++ K +P
Sbjct: 6 KLIRKLGKEAYNLYIVGGYIRDRILNREAKDYDFVVQEDAEKIAKLVAEKLGGTFVPFMA 65
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY-----AD 130
GT +++ + D T LR + D D RDFT+NA+
Sbjct: 66 EKGTYRVVVGDEILDFTNLRGE--------------DIYIDLAHRDFTMNAMAIKLTDYF 111
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +ID GG+ D++NR IK +G ED LR LR RF Y + +ID
Sbjct: 112 EFEYIIDPFGGMTDIKNRKIKHVGMM--TFKEDPLRALRAVRFAVTY-KFDIDESTKAKI 168
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN-------------GGIFKEIFLD 237
+ + +K ++ ERI +EI +L+ KN + M + + +
Sbjct: 169 REEAELIKQVAPERIMNEIFIILKEKNSHKYLRMMEDLKLMENIFEEVAKMKEVGKCYYH 228
Query: 238 VQEISLDQLSQVIEAEQVFE-----------------------WKIDSLLRFIVLISWQD 274
+ + L V E E + K+ +++ L
Sbjct: 229 LTNAWIHSLKTVEEYENIINSMRFPKDVYDIVSEYLDRKLSSDNKVKDIIKLGALFHDIG 288
Query: 275 KKS----------------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL--SI 310
K + +A + +P++ L + +
Sbjct: 289 KPESIYIDTENRVHFYNHETKGAEIVKKIASRMKMPKKESSLLKKLVLYHMKPLMYYVNG 348
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLA-----------LHYNNLTHQDTCFILQVLS---DII 356
K + + ++ + I L L + T FI ++L +
Sbjct: 349 GPTNKSLFRFFSELKDDSIAILLLSQADFTATRLNLGKEEEIPRYTDFITRLLKRYVEFK 408
Query: 357 HWKKPLF-PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+KPL PL ++ + + GKK+G IL ++ Q + + + ++
Sbjct: 409 ETEKPLLSPLD--IIINFDVKDGKKLGQILYEIRKNRFYGEIQDKNDAIEFVKERMK 463
>gi|120556070|ref|YP_960421.1| polynucleotide adenylyltransferase region [Marinobacter aquaeolei
VT8]
gi|166233863|sp|A1U5G5|CCA_MARAV RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|120325919|gb|ABM20234.1| Polynucleotide adenylyltransferase region [Marinobacter aquaeolei
VT8]
Length = 373
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 69/377 (18%), Positives = 133/377 (35%), Gaps = 24/377 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D P+ +++ K P +
Sbjct: 2 QTYLVGGAVRDKLLGLGVKDRDWVVVGATPEDMIQRGFKQVGADFPVF--------LHPD 53
Query: 87 KYFDITTLRSDLIT-DGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + V++ + D RRD TINA+ + G ++D G
Sbjct: 54 TGEEYALARTERKQGRGYHGFSVYSAPDVSLEDDLRRRDLTINAMAETENGDLVDPFNGH 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL + ++ + ED LRILR RF A ++ +
Sbjct: 114 ADLEQKKLRHV---SEAFAEDPLRILRTARFAARLQPLGFSICRETMALMRQMVTSGELG 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER+W E+ + L + P + G + + ++ + + + + +
Sbjct: 171 DLVPERVWQEVQRALHEQAPGVFFDVLRELGALQVLIPELTDEQPFR-QGLSALQCIHRK 229
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR--YFLISFFNCNFNQKTLSIPEIKKL 316
+ + + L+S + ++ AK P + R L+ F N + +L
Sbjct: 230 QGSTAQHYAALLSGVPEPDAVARAKAMKSPNDCRELTHLVGLFMAQLNGASPETRLTPEL 289
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376
DK + + L ++ + +T ++ GI
Sbjct: 290 AMELLDKADFWRRPDRFGVLLGTLACTLQSEPDHLIQQLELAAHRAQSVTPHPFLQKGIQ 349
Query: 377 PGKKVGNILVHCKQEWI 393
GK +G + + I
Sbjct: 350 -GKALGEAIRKERVARI 365
>gi|254805021|ref|YP_003083242.1| tRNA nucleotidyltransferase [Neisseria meningitidis alpha14]
gi|254668563|emb|CBA06042.1| tRNA nucleotidyltransferase [Neisseria meningitidis alpha14]
Length = 410
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 67/341 (19%), Positives = 121/341 (35%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ G + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A YG + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFAARYGFEIAEETMKLMRQMVANGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E K L KNP I + G K + +V + E
Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAANMGLSLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|148358518|ref|YP_001249725.1| tRNA nucleotidyltransferase [Legionella pneumophila str. Corby]
gi|296108394|ref|YP_003620095.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Legionella
pneumophila 2300/99 Alcoy]
gi|148280291|gb|ABQ54379.1| tRNA nucleotidyltransferase [Legionella pneumophila str. Corby]
gi|295650296|gb|ADG26143.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Legionella
pneumophila 2300/99 Alcoy]
Length = 410
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 68/346 (19%), Positives = 132/346 (38%), Gaps = 23/346 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ + VQ+ D P+ +++ + + + +
Sbjct: 2 KVYLVGGAVRDRLLGIPVQEQDWVVVGATPEELLKR------RYRQVGRDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D RRD TINA+ D+QG +ID G
Sbjct: 54 TKEEYALARTERKSAPGYYGFICDFSESVTLEEDLARRDLTINAMAMDEQGNLIDPYQGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL + ++ + ED +R+LR RF + + + S+ + L
Sbjct: 114 RDLEEKLLRHV---SPAFAEDPVRVLRVARFASRFHHLGFRVANETRLLMYSMVKQGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER+W E K LE KNP I+ + + + I ++ SL + + Q +
Sbjct: 171 HLIPERVWQEWQKSLEEKNPEQFILSLRSCDALRVILPEIN--SLFGVPNPYQYHQEIDT 228
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS-FFNCNFNQKTLSIPEIKKLF 317
I SL+ ++ + A L + + + + T I +
Sbjct: 229 GIHSLMALRASSELSEEPLVRFAALVHDLGKASTPIQAWPKHHGHEEEGTKLIRALCTRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
+ D +A L+ + + ++++L + +++P
Sbjct: 289 RIPNDYRDLAVTVARAHLNIHRVCELRPNTVVKLLEQVDAFRRPQL 334
>gi|238750941|ref|ZP_04612438.1| Phosphatase [Yersinia rohdei ATCC 43380]
gi|238710855|gb|EEQ03076.1| Phosphatase [Yersinia rohdei ATCC 43380]
Length = 412
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 67/344 (19%), Positives = 123/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRDSL+NL V + D P++++ + K P +
Sbjct: 2 EIYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLAQGYQQVGKDFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D LRRD TINA+ +GK+ D G
Sbjct: 54 SHEEYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSEGKLFDPYNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL NR ++ + ED LR+LR RF A + S+ A
Sbjct: 114 QDLANRVLRHV---SDAFGEDPLRVLRVARFAARFAHLGFTVAPETQSLMAAMAESGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L+ +P + + G +F +++ + + E
Sbjct: 171 ALTPERVWKETEKALKTSSPQIYFQVLRDCGALAVLFPEIERLFGVPAPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + ++ + F + + + ++ +
Sbjct: 231 HTLMTLAIAAKLSPEVDVRFAALCHDLGKGLTPKEFW-PHHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 290 VPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPE 333
>gi|284929226|ref|YP_003421748.1| tRNA nucleotidyltransferase/poly(A) polymerase [cyanobacterium
UCYN-A]
gi|284809670|gb|ADB95367.1| tRNA nucleotidyltransferase/poly(A) polymerase [cyanobacterium
UCYN-A]
Length = 421
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 83/409 (20%), Positives = 155/409 (37%), Gaps = 43/409 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K+ +VGGAVRD L+N ID+ + P+ V +I K I ++ K+
Sbjct: 24 KAYLVGGAVRDILLNSEQDYIDLDIIL-PNFVTKIAKKITLNYHVNFI------VLDSKR 76
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA-DQQGKVIDYVGGLNDLR 146
T I + D +RDFTINA+ + +++D + GL DL+
Sbjct: 77 SIVRITFNKGTIDL----AKQNGNNVHKDLKQRDFTINAIAYSFHRQQLVDPLKGLRDLQ 132
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
+ I+ I + + +D LR++R +R + I++ A + + ++ ERI
Sbjct: 133 IKNIRMIHINN--LQDDPLRLIRAYRQASQLNFI-IETRTRHAIKEVSSCISQVAVERIQ 189
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-----AEQVFEWKID 261
+E+ LL++ N + + M G+ K I + + + L QV ++ ++D
Sbjct: 190 TELGYLLQSFNGSDWLAEMGKDGLLKVILPGLNQNNFYYLKQVNHKILLLINKLKRNELD 249
Query: 262 SLLRFI----------------VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN--F 303
F + + Q+ + + + L
Sbjct: 250 IFFDFNRIRDIYNNNLVKRVKLLCLLSQNPEVAVQQLTYLKYSKNDVKILPILLKQISLI 309
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
N++ +S I +F G L +L N I + L+
Sbjct: 310 NKQPISRKHIHSIFVETGKNFPTFAL---FSLVKNINHKLIFEMIYRYLNPHDRLAHSQP 366
Query: 364 PLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+TG D+ + I G+K+G IL + + I +E L L +++
Sbjct: 367 LITGRDLIINLKIKQGQKIGQILSYVQIAHIEEKIFTRKEALD-LAKEI 414
>gi|291326511|ref|ZP_06573973.1| multifunctional CCA protein [Providencia rettgeri DSM 1131]
gi|291313991|gb|EFE54444.1| multifunctional CCA protein [Providencia rettgeri DSM 1131]
Length = 417
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 67/355 (18%), Positives = 130/355 (36%), Gaps = 25/355 (7%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISY 77
+ ++ + K +VGGAVRD L+ L + D D P+ ++ + K P
Sbjct: 1 MDVIEAIQMKVYLVGGAVRDQLLGLPISDRDYVVVGTTPEAMLSQGFQQVGKDFPVF--- 57
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQG 133
+ K + + R++ Y + D LRRD TINA+ + G
Sbjct: 58 -----LHPKTHEEYALARTERKIGAGYTGFSCYSAPDVTIEDDLLRRDLTINAIAQSESG 112
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VA 189
+++D G+ DL++R ++ + ED LR+LR RF A Y E +
Sbjct: 113 EIVDPYQGVKDLKSRVLRHV---SDAFSEDPLRVLRVARFAARYFEHGFTIAPETLTLMQ 169
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
++ A L L++ER+W+E K L++ +P + G +F +V + +
Sbjct: 170 TMAATGELSHLTAERVWTETEKALKSNSPQVYFDVLRQCGALAVLFPEVDALFGVPAPEK 229
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP--REIRYFLISFFNCNFNQKT 307
E +++ I +S ++ +
Sbjct: 230 WHPEVDTGIHTLMVMKVIAELSNNVDIRFAALCHDLGKALTPTDIWPSHPNHGEAGIPLI 289
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
++ K+ D +A+L + + ++ + + W+KP
Sbjct: 290 ETLCARLKVPTTARD---LARLAARYHDKIHVINKLPANELIAIFDGLDSWRKPE 341
>gi|318604181|emb|CBY25679.1| tRNA nucleotidyltransferase [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 412
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 119/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+NL + + D P++++ + K P +
Sbjct: 2 KIYLVGGAVRDSLLNLPITEQDWVVVGATPEQLLAQGYQQVGKDFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D LRRD TINA+ +G++ D G
Sbjct: 54 THEEYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSEGELFDPYNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
D+ R ++ + ED LR+LR RF A + S+ A S
Sbjct: 114 QDIEKRVLRHV---SDAFGEDPLRVLRVARFAARFAHLGFTVASETQSLMAAMAKSGELS 170
Query: 203 ERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ K L+ ++P + + G +F +++ + + E
Sbjct: 171 ALTLERVWKETEKALKTQSPQIYFQVLRDCGALAVLFPEIERLFGVPAPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + ++ + F + + + ++ +
Sbjct: 231 HTLMTLAMAAQLSPEVDVRFAALCHDLGKGLTPKEFW-PHHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 290 VPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPE 333
>gi|271501860|ref|YP_003334886.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dickeya dadantii Ech586]
gi|270345415|gb|ACZ78180.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dickeya dadantii Ech586]
Length = 416
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 66/344 (19%), Positives = 121/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ V + D P+ ++ + + P + +
Sbjct: 2 KIYLVGGAVRDGLLGRPVTERDWVVVGATPEMLLAQGYQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + + D LRRD TINA+ ++ G++ID GG
Sbjct: 54 TKEEYALARTERKSGNGYTGFICQATPNITLEEDLLRRDLTINAIAQEESGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD----GLVASIKAKKGLK 198
DL+NR ++ + ED LR+LR RF A Y L+ ++ L
Sbjct: 114 RDLQNRLLRHV---SQAFSEDPLRVLRVARFAARYAHLGFQIAEETLHLMQTMTRNGELD 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E K L ++P + + G +F ++ + E
Sbjct: 171 FLTPERVWKETEKALGTQDPQVYFQVLRDCGALAVLFPEIDRLYGVPAPAQWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ L +S ++ L + + + + +
Sbjct: 231 HVMMSLAMAARLSPALDVRFATLCHDLGKG-LTPPELWPRHHGHGVAGVPLVEALCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + +L++ I W+KP
Sbjct: 290 VPNALRDLACLVTEYHDLIHTVQILQPKTLLKLFDAIDVWRKPQ 333
>gi|329298667|ref|ZP_08256003.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Plautia stali symbiont]
Length = 410
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 68/345 (19%), Positives = 124/345 (35%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD+L+ L V+D D PD ++ + + P + +
Sbjct: 2 KTFLVGGAVRDALLRLPVKDRDWVVVGATPDSMLAQGYQQVGRDFPVF--------LHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y V + D RRD TINA+ G +ID G
Sbjct: 54 SREEYALARTERKSGNGYTGFVTQFAPDVTLEQDLQRRDLTINAIAQAADGTLIDPYHGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+ RT++ + ED LR+LR RF A + N ++ +
Sbjct: 114 QDLQQRTLRHV---SAAFNEDPLRVLRVARFAARFAHLNFRVAPETQALMREMAHSGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E K L +NP + + + +F ++ + E
Sbjct: 171 HLTAERVWKETEKALLTRNPQVYFQQLRDCDALQVLFPEIDNLYGIPAPVKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L + +S D+ + + + + + + I E
Sbjct: 231 HALMTLTMVAALS--DQLDVRFATLFHDVGKALTPTEKWPSHHGHGPAGVPIVEALCQRL 288
Query: 319 LYGDKVMIAKLKI-FLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
++V L + + + Q ++ + I W+KP
Sbjct: 289 RVQNQVRDLALVVTEFHDVVHTIERQPADALVALFDRIDAWRKPD 333
>gi|78183796|ref|YP_376230.1| polyA polymerase [Synechococcus sp. CC9902]
gi|78168090|gb|ABB25187.1| possible polyA polymerase [Synechococcus sp. CC9902]
Length = 404
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 69/408 (16%), Positives = 133/408 (32%), Gaps = 39/408 (9%)
Query: 12 DSDLINILSLLNKGEDK-SCIVGGAVRDSLMNLS-------VQDIDIATTILP----DRV 59
S L + S K IVGGAVRD L++ V D+D +
Sbjct: 8 SSLLAELRSAAVGAGVKRLAIVGGAVRDGLLHERYGRVWTGVPDLDWILEGDAMRLAAEL 67
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
++ + R + S+GT+ + D R + VV +D +R
Sbjct: 68 VKRCGEQRVTELQNYGSFGTVALQLDGIALDFAMARKETYPMPGENPVVEPGSLDSDLVR 127
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTINA+ D G++ID G DL R + F+ D +D R++R R+ A G
Sbjct: 128 RDFTINAMAQDLLSGQLIDPHRGQQDLAERRLVFLHDESVS--DDPTRVIRASRYAARLG 185
Query: 179 EK-----------NIDSDGLVAS-IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226
+ A + R+ E+++L + A+ +
Sbjct: 186 FVLSPEALQQVTATVRRWPWSWQLHDAPDQAPPALANRLRMELDRLFAGEPWALALDCLE 245
Query: 227 NGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286
+ +Q + ++ A+++ + + L D +++
Sbjct: 246 EWQAMALLDPSLQ-HDRGRNRRIAWAQRLGLPLLPAWLA-----GAPDPEAVARRLGVPG 299
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346
+ L+ + + + ++ + + +
Sbjct: 300 QQQRWLKQLLQLQDWLVSTDAPDVHAAPDVWTAALENQGWMPETVAFMVCSQ------PP 353
Query: 347 FILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
+L W+ P + D++ G G +GN L + E +
Sbjct: 354 QWKPLLRWWGRWRHLKSPRSARDLIADGWSSGPALGNELQRLRLEALK 401
>gi|331006394|ref|ZP_08329703.1| tRNA nucleotidyltransferase [gamma proteobacterium IMCC1989]
gi|330419818|gb|EGG94175.1| tRNA nucleotidyltransferase [gamma proteobacterium IMCC1989]
Length = 383
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 77/385 (20%), Positives = 147/385 (38%), Gaps = 36/385 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGA+RD L+N + D P+ +++ P + +
Sbjct: 2 KTYLVGGAIRDQLLNFPYHEKDWVVVGSSPEEMIK------QGYTPVGKDF--PVFLHPS 53
Query: 87 KYFDITTLRSDLITDGRYA----KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y + + D RRD TINA+ G +ID GG
Sbjct: 54 THEEYALARTERKTAPGYKGFTFHTDKSVTLEDDLQRRDLTINAIAQSDDGTLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198
D+ R ++ + ED +R+LR RF A Y ++ L+ ++ A+ +
Sbjct: 114 QDIIGRCLRHV---SSAFSEDPVRVLRVARFAARYHHLGFSIAKETITLMQNMVAQGETQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE--AEQVF 256
L +ER+W E+ K L ++P + ++ EI L LS +
Sbjct: 171 HLVAERVWQEMQKALTEQHPEIFFTCLEKCHALSDLLPKTDEI-LKTLSPLNTTLLTNTA 229
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+ D L+RF L + I ++ + ++P E R I + + +KL
Sbjct: 230 KKSGDPLIRFSALCYPFNLDDIDALCQHLTVPNEYRELAILTKKHDSIYLKPNDWNSEKL 289
Query: 317 FYLYGDKVMIAKLKIFL--------ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
+ + K + F L+ N+ + T +L+ + +
Sbjct: 290 NAFFQQCDTLRKPERFQQLLDTWDSMLNKNSEQKESTDTTAHLLAAAEAYNN----VDHQ 345
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWI 393
++K G ++GN + ++E +
Sbjct: 346 ALIKQGFKK-AELGNAIKQKRKEQV 369
>gi|332971517|gb|EGK10467.1| multifunctional CCA protein [Kingella kingae ATCC 23330]
Length = 413
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 63/340 (18%), Positives = 121/340 (35%), Gaps = 15/340 (4%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ +VGGAVRD+L+ +VQD D + ++ + + K
Sbjct: 2 QIYLVGGAVRDTLLGKNVQDRDWVVVG--AEASTLLAQ---GFTAVGKDFPI--FLHPKT 54
Query: 88 YFDITTLRSDLITDGRYA----KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ + R++ T Y + + D RRD TINA+ D+ G +ID GG
Sbjct: 55 HEEYALARTERKTGKGYTAFAVHADASVTLEQDLQRRDLTINAMAQDEHGSIIDPFGGQR 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNIDSDGLVASIKAKKGLKILSS 202
DL+ ++ + ED +RILR RF A YG ++ L+ + A + L +
Sbjct: 115 DLQQGILRHV---SPAFAEDPVRILRTARFAARYGFAIAPETMQLMRDMVAAGEVDALVA 171
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
ER+W E K L P I + + G + +V+ + E
Sbjct: 172 ERVWQEFAKGLMECEPRKMIEVLRDCGALAILLPEVEALFGVPQHADYHPEVDSGEHTLL 231
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
+L+ ++ + ++ L + ++
Sbjct: 232 VLQRAADLNLSLAERYAALLHDLGKALTPHDVLPKHIGHDRRGVEPIRAVNQRWRVPKHC 291
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + F + + I+++L + +++P
Sbjct: 292 AELAELVCAFHIRFHQIGQIKQASKIIKLLKECDAFRRPE 331
>gi|33593986|ref|NP_881630.1| tRNA CCA-pyrophosphorylase [Bordetella pertussis Tohama I]
gi|73619757|sp|Q7U358|CCA_BORPE RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|33564060|emb|CAE43328.1| tRNA nucleotidyltransferase [Bordetella pertussis Tohama I]
gi|332383403|gb|AEE68250.1| tRNA CCA-pyrophosphorylase [Bordetella pertussis CS]
Length = 364
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 18/223 (8%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
+ IVGGAVRD L+ L D D P+ + R IP + +
Sbjct: 10 AGLRVYIVGGAVRDDLLGLPAGDRDWVVVGATPEDMARR------GFIPVGGDF--PVFL 61
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYV 139
+ + R++ + Y F + D RRD T+NA+ QG+++D +
Sbjct: 62 HPRTKEEYALARTERKSGRGYKGFTFYTGADVTLEQDLQRRDLTVNAIARTPQGELVDPL 121
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GL 197
G+ D+R R ++ +G+A ED +RILR RF A +G+ +I + + + +
Sbjct: 122 DGVADVRARVLRHVGEA---FAEDPVRILRLGRFAARFGDFSIAPETMQLCRRMVEAGEA 178
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
L ER+W E+++ L A+ P + + G + ++ +
Sbjct: 179 DALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHD 221
>gi|297180111|gb|ADI16334.1| tRNA nucleotidyltransferase/poly(a) polymerase [uncultured
bacterium HF130_01F24]
Length = 410
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 71/345 (20%), Positives = 132/345 (38%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L+ + +D D P + + + K P +
Sbjct: 2 KTYLVGGAVRDRLLGVQTKDRDWVVVGASPSSMAELGYRQVGKDFPVF--------LHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ T + F + D RRD TINA+ D G +ID GGL
Sbjct: 54 TKEEYALARTERKTGVGHTAFDFNISSKVTLEEDLERRDLTINAIAEDHDGNLIDPFGGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
+D++N+ ++ + +ED LR+LR RF+A + ++ + L
Sbjct: 114 SDIKNKLLRHV---SEAFIEDPLRVLRVARFYAKLAPFGFNISPDTLKLMSDVSHSSELN 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
LS+ERIW E N L +P + + G K I ++ L ++ Q E
Sbjct: 171 TLSAERIWQEFNAALATPSPEKFVSTLRKCGALKAILPELDA--LFRVPQPKEHPSELNT 228
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI-SFFNCNFNQKTLSIPEIKKLF 317
+ +L+ V + S+ + + R + S + + + + K
Sbjct: 229 GMQALMSLQVSSGLSKETSVRYASLMHDVGRGLTNQPSGSSHSDHRALGLELLSKTTKRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L ++ L +L ++ + ++P
Sbjct: 289 CVPNEHSSLAALVCEHSIKMQALDKLSADELLSLIESLDAIRRPE 333
>gi|294789547|ref|ZP_06754782.1| multifunctional CCA protein [Simonsiella muelleri ATCC 29453]
gi|294482484|gb|EFG30176.1| multifunctional CCA protein [Simonsiella muelleri ATCC 29453]
Length = 416
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 69/340 (20%), Positives = 124/340 (36%), Gaps = 15/340 (4%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD+L+ L V+D D + ++ + +
Sbjct: 3 KVYLVGGAVRDALLGLDVKDRDWVVVG--AEAADLLAQ---GFRAVGQDF--PVFLHPTT 55
Query: 88 YFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ + R++ Y F + + D LRRD TINA+ D+ G +ID GG +
Sbjct: 56 HEEYALARTERKISKGYTGFQFYADKSVTLEQDLLRRDLTINAMAQDEHGNIIDPFGGQS 115
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSS 202
DL+N+ ++ + ED +RILR RF A YG ++ L+ + A + L +
Sbjct: 116 DLQNKILRHV---SAAFAEDPVRILRIARFAARYGFTVAPETMQLMCDMVANGEVDALVA 172
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
ER+W E K L KNP I + G + + +V + E
Sbjct: 173 ERVWQEFAKGLMEKNPRKMIEILRECGALRVLLPEVDALFGVPQRADFHPEICSGEHTLL 232
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
+L+ + + + ++ L + L +
Sbjct: 233 VLQRAADLGFGLPERYAALLHDLGKALTPIDILPKHIGHDMRGVKLVRAVNVRWRVPKAC 292
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + F + + L+VL + +++P
Sbjct: 293 GELAELVCKFHIRLHQIGQAKRAEAALKVLKETDAFRRPE 332
>gi|293390381|ref|ZP_06634715.1| multifunctional CCA protein [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290950915|gb|EFE01034.1| multifunctional CCA protein [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 425
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 76/354 (21%), Positives = 133/354 (37%), Gaps = 26/354 (7%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTIK 81
++ + +VGGAVRD L+NL VQD D P+ +++ K P
Sbjct: 2 SENHFQIYLVGGAVRDQLLNLPVQDRDWVIVGATPEALLQQGYHQVGKDFPVF------- 54
Query: 82 IICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
+ + + R++ G + + D +RRD TINA+ D QG + D
Sbjct: 55 -LHPQTKEEYALARTERKSGAGYTGFICDFSPDINLEQDLIRRDLTINAMAQDLQGNLFD 113
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA---- 193
GG DL NR ++ + +ED LR+LR RF A Y +
Sbjct: 114 PYGGAQDLANRVLRHV---SPAFVEDPLRVLRVARFTARYHYLGFKIAEETLQLMKDLTA 170
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
+ L+ L++ER+W+E K L KNP + G K +F ++ + E
Sbjct: 171 QGELQHLTAERVWAETEKALNEKNPEIYFEILRLVGALKVLFPELDALYGVPNPAKYHPE 230
Query: 254 QVFEWKIDSLLRFIVLISWQDKKS-----ILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+L+ + L+S Q ++ + + + +
Sbjct: 231 IDSFVHTMLVLKQVTLLSEQVDCHKSAVRFAAICHDLGKAKTPKQSW-PHHHGHEKLGMA 289
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ K + G +A+L H + + I+++ + W+KPL
Sbjct: 290 PTQSLCKRLKVPGYYQQLAELTCEYHSHIHKIFELRPETIVKLFNTFDVWRKPL 343
>gi|123443861|ref|YP_001007832.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|166233891|sp|A1JQW2|CCA_YERE8 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|122090822|emb|CAL13704.1| tRNA nucleotidyltransferase [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 414
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 124/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRDSL+NL V + D P++++ + K P +
Sbjct: 2 KTYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLAQGYQQVGKDFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D LRRD TINA+ +G++ D G
Sbjct: 54 THEEYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSEGELFDPYNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
D+ R ++ + ED LR+LR RF A + S+ A
Sbjct: 114 QDIEKRVLRHV---SDAFGEDPLRVLRVARFAARFAHLGFTVASETQSLMAAMAKSGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L+ ++P + + G +F +++ + + E
Sbjct: 171 ALTPERVWKETEKALKTQSPQIYFQVLRDCGALAVLFPEIECLFGVPAPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + ++ + F + + + ++ +
Sbjct: 231 HTLMTLAMTAQLSPEVDVRFAALCHDLGKGLTPKEFW-PHHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 290 VPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPE 333
>gi|192361371|ref|YP_001981281.1| tRNA nucleotidyltransferase [Cellvibrio japonicus Ueda107]
gi|190687536|gb|ACE85214.1| tRNA nucleotidyltransferase [Cellvibrio japonicus Ueda107]
Length = 439
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 68/348 (19%), Positives = 117/348 (33%), Gaps = 29/348 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K+ +VGGAVRD L+ V + D M +P + I +
Sbjct: 33 KTYLVGGAVRDKLLGRPVHERDWVVIGSSPAAMEAA-----GFLPVGKDF--PVFIHPQT 85
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ T Y F + D +RRD TINA+ D G +ID GG +
Sbjct: 86 KEEYALARTERKTGHGYGGFSFYCGENVALEEDLIRRDLTINAMAEDDVGNIIDPYGGQS 145
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL+ R ++ + ED +RILR RF A Y + S+
Sbjct: 146 DLQQRLLRHV---SPAFAEDPVRILRVARFAARYHGLGFTLAEETLALMRSMVCNGEADH 202
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L +ERIW E + L P I + + G + +V + + V E
Sbjct: 203 LVAERIWKETERALAEPWPHIFIQVLRDCGALGRLMPEVDALFGIPQTAVHHPEIDTGIH 262
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKF-----SLPREIRYFLISFFNCNFNQKTLSIPEIK 314
L+ +S ++ + R+ + ++
Sbjct: 263 TLLSLQQAARLSPLPLVRFATLMHDLGKGATPPEKWPRHIAHEIRSLPLIKQLCDRIAAP 322
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
K + ++ L H + +L+ L + +++P
Sbjct: 323 KEYKE------LSLLVAEYHTHCHRALELTAATLLKTLQALDGFRRPE 364
>gi|197335557|ref|YP_002157039.1| multifunctional CCA protein [Vibrio fischeri MJ11]
gi|226702092|sp|B5FB77|CCA_VIBFM RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|197317047|gb|ACH66494.1| multifunctional CCA protein [Vibrio fischeri MJ11]
Length = 407
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 66/344 (19%), Positives = 123/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+N+ V+D D P + + +T + P + K
Sbjct: 2 KIYLVGGAVRDSLLNIDVKDKDWVVVGSTPQEMGSLGYQTVGQDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D LRRD TINA+ G++ID G
Sbjct: 54 TKEEYALARTERKSGQGYKGFTCYAEPDVTLEEDLLRRDLTINAIAQADNGELIDPYNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN----IDSDGLVASIKAKKGLK 198
D+ +RT++ + ED LR+LR RF A + ++ L+ + L
Sbjct: 114 QDIIDRTLRHV---SDAFTEDPLRVLRVARFAARFHHLGFTIAHETMNLMKVLVDSGELS 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E K L +++P + + G + ++ + + E
Sbjct: 171 HLTAERVWQEWQKSLSSQHPEIFLSTLKECGALAIVLPELNALFGVPQPEKWHPEIDSGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + L+S + + + I +
Sbjct: 231 HTLMVAQQAALLSQDLPTRFAAQVHDLGKG-VTPESEWPSHKLHCHTGIKLIKRLCDRVR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +A L + + +++ + W+KP
Sbjct: 290 VPNDYRDLALLVCEHHSNIHRAAELRAQTFIKIFDKMDVWRKPE 333
>gi|288573162|ref|ZP_06391519.1| Polynucleotide adenylyltransferase region [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288568903|gb|EFC90460.1| Polynucleotide adenylyltransferase region [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 397
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 58/396 (14%), Positives = 134/396 (33%), Gaps = 31/396 (7%)
Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81
+VGGAVRD+ + L+ D+D+ + + + I P +
Sbjct: 11 FGGRGLSVWLVGGAVRDAALGLAPGDLDLVVDLPMEEIAAICGGAVIG--PEGMQ--VCI 66
Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141
C + ++ L+ + D RDFT+NA+ + G ++D G
Sbjct: 67 TSCDEFVMEVCPLQGG--------------SIEKDLSVRDFTVNAMALTEDGTLVDPFDG 112
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
+ DLR+ ++F+GD R+ ED +R LR R + G +
Sbjct: 113 MEDLRSMVLRFVGDPSERLAEDPIRALRMCRLASSLGLTPSVDSLKAVRNFVATRQDRIE 172
Query: 202 SERI-WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ ++ P+ + M + G+ + + + + V+ + +
Sbjct: 173 ALSRPRVGKEMVVGLVRPVKYLSTMMDVGLVRLLMPSLDHGLALSVFSVLAESRGEVLPL 232
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+ L + +S D+++ + + R IR S+ ++ ++
Sbjct: 233 EMALAVLAGLSRDDRETPSKRWISWGVSRSIRREAERLARFRSVDPDSSLRDMGEMILDN 292
Query: 321 GDKVMIAKLKIFLALHYN-----NLTHQDTCFILQVLSDIIHWKKPLFPLTGD---DVVK 372
GD +++ ++ A + + + + + G D+
Sbjct: 293 GDDIILKLFELSYAWAQGCGVDVGRWREGRSRLDDAIDHVARASEAGIVPDGSRIGDL-- 350
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G +V +V + + + ++ +L
Sbjct: 351 --VGEGPQVKRCMVELYRSLASGNCSSEEDAWEAVL 384
>gi|259907107|ref|YP_002647463.1| tRNA nucleotidyl transferase [Erwinia pyrifoliae Ep1/96]
gi|224962729|emb|CAX54184.1| tRNA nucleotidyl transferase [Erwinia pyrifoliae Ep1/96]
gi|283476909|emb|CAY72771.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Erwinia pyrifoliae
DSM 12163]
Length = 407
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 63/343 (18%), Positives = 121/343 (35%), Gaps = 21/343 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L++L ++D D P +++ + + + P +
Sbjct: 2 KTYLVGGAVRDGLLDLPLKDKDWVVVGASPQQMLDLGYQQVGRDFPVF--------LHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y V + D RRD T+NA+ D G D GG
Sbjct: 54 SHEEYALARTERKSGQGYTGFVCYSAPDVTLEQDLARRDLTMNAIAQDTDGNYYDPYGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
NDL+ R ++ + ED LR+LR RF A + N + ++ L+
Sbjct: 114 NDLQRRLLRHV---SAAFKEDPLRVLRVARFAARFAHLNFRIADETLALMQTMTDSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E L+ +P + + G +F ++ + E
Sbjct: 171 QLTAERVWKETESALQTPSPQVFFQVLRDCGALAVLFPELDNLYGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + + + + + +
Sbjct: 231 HTLMTLEMAARLS-PEIDIRFATLFHDVGKALTPPEKWPSHPGHGPAGVPLVAALCERLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ +A L + + HQ ++ + + W+KP
Sbjct: 290 VPNALRDLALLVTEFHDLVHTIQHQSPAQLVALFDRLDAWRKP 332
>gi|261401213|ref|ZP_05987338.1| multifunctional CCA protein [Neisseria lactamica ATCC 23970]
gi|269208792|gb|EEZ75247.1| multifunctional CCA protein [Neisseria lactamica ATCC 23970]
Length = 417
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 70/341 (20%), Positives = 125/341 (36%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFWPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D G +ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGLIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A YG + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFAARYGFEIAEETMKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G K + +V + E
Sbjct: 171 AERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPEVDALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-PDILPRHYGHDINGVEPVREVNRRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 YCAELAELVCRWHIIFHQVGQLKSRTILNVLKKTDAFRRPE 330
>gi|42569106|ref|NP_179349.2| polynucleotide adenylyltransferase family protein [Arabidopsis
thaliana]
gi|330251561|gb|AEC06655.1| polynucleotide adenylyltransferase-like protein [Arabidopsis
thaliana]
Length = 757
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/255 (22%), Positives = 100/255 (39%), Gaps = 33/255 (12%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+L LL + + +VGG VRD ++N +D D+ TT ++ R+F + + +
Sbjct: 81 VLRLLRRQGFDAYLVGGCVRDLILNRVPKDYDVITTADLKQIRRLFHRAQV----IGKRF 136
Query: 78 GTIKIICRKKYFDITTLRSDLITDG---------------------RYAKVVFTRDWKAD 116
+ ++++ + +D K+ D K
Sbjct: 137 PICHVWMGGSIIEVSSFDTVAHSDSDLEKSKEKSGVSLDTKANKNNSLFKMYSGWDIKDC 196
Query: 117 -----SLRRDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170
SL+RDFTIN+L+ + DY G+ DL + ++ + AH ED RILR
Sbjct: 197 KRWRNSLQRDFTINSLFYNPFDFTIYDYANGMEDLTDLKLRTLVPAHLSFKEDCARILRG 256
Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230
R A G ++ D A + + L R+ E+N +L +I+ + +
Sbjct: 257 LRIAARLG-LSLSKDVKTAIPEFVSSVANLDQFRLIMEMNYMLAYGAAAPSILLLMKFKL 315
Query: 231 FKEIFLDVQEISLDQ 245
+ Q LDQ
Sbjct: 316 LHVLLP-FQAAYLDQ 329
>gi|157372526|ref|YP_001480515.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Serratia
proteamaculans 568]
gi|167006459|sp|A8GJU7|CCA_SERP5 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|157324290|gb|ABV43387.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Serratia proteamaculans 568]
Length = 414
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 122/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRDSL+ + V D D P + + + K P + K
Sbjct: 2 KTYLVGGAVRDSLLEIPVVDRDWVVVGAAPSELTALGYQQVGKDFPVF--------LNPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINA+ G++ID G+
Sbjct: 54 THEEYALARTERKSGQGYTGFTCYAAPDVTLEEDLQRRDLTINAIARSDDGELIDPFNGV 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ R ++ + ED LR+LR RF A + A + +
Sbjct: 114 ADLQARVLRHV---SDAFGEDPLRVLRVARFAARFAHLGFSIAPETAELMRQMARSGELA 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
++ER+W E K L++++P + + +F ++ + E
Sbjct: 171 ALTAERVWKETEKALQSQSPQVYFQVLRDCEALGVLFPEIDTLFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + ++ + + + + L + + +
Sbjct: 231 HTLMTLAIAAQLSPEVDVRFSALCHDLGKGQTPKELW-PHHHGHGPAGVLLVEALCRRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ + W+KP
Sbjct: 290 VPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAVDVWRKPQ 333
>gi|238796953|ref|ZP_04640457.1| Phosphatase [Yersinia mollaretii ATCC 43969]
gi|238719213|gb|EEQ11025.1| Phosphatase [Yersinia mollaretii ATCC 43969]
Length = 412
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 123/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+NL V + D P++++ + K P +
Sbjct: 2 KVYLVGGAVRDNLLNLPVTEQDWVVVGATPEQLLAQGYQQVGKDFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D LRRD TINA+ G++ID G
Sbjct: 54 SHEEYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSDDGELIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+N+ ++ + ED LR+LR RF A + S+ A
Sbjct: 114 QDLKNKVLRHV---SEAFGEDPLRVLRVARFAARFAHLGFSVAPETQSLMAAMARSGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L+ ++P + + +F ++ + + E
Sbjct: 171 ALTPERVWKETEKALKTQSPQVYFQVLRDCDALAVLFPEIDRLFGVPAPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + ++ + F + + + ++ +
Sbjct: 231 HTLMTLTIAARLSPEVDIRFAALCHDLGKGLTPKQFW-PHHHGHGPAGVKLVEQLCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 290 VPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPE 333
>gi|291612637|ref|YP_003522794.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Sideroxydans lithotrophicus ES-1]
gi|291582749|gb|ADE10407.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Sideroxydans lithotrophicus ES-1]
Length = 409
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 68/341 (19%), Positives = 121/341 (35%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ VGGAVRD L+ L VQD D P++++ P + +
Sbjct: 7 KTYCVGGAVRDRLLGLPVQDHDWVVVGSTPEQMVAR------GFRPVGADF--PVFLHPD 58
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ Y + D LRRDFTINA+ D G +ID GG
Sbjct: 59 THEEYALARTERKVAQGYKGFTVYTSPDVTLEQDLLRRDFTINAIAEDADGNLIDPYGGQ 118
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNIDSDGLVASIKAKKGLKILS 201
DL+ ++ + ED +RILR RF A +G ++ L+ + + L
Sbjct: 119 TDLKAGILRHV---SDAFAEDPVRILRGARFAARFGFTFAPETLALMRKMVDNGEVDALV 175
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ + L K P + G K+I ++ + E +
Sbjct: 176 AERVWQELARGLMEKQPSRFFTTLRECGALKKILPEMDALFGVPQPAHYHPEIDCGIHVL 235
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
++ + ++ + + + + + + +
Sbjct: 236 MVIDDTAKCGHPLEVRFAALGHDLGKA-TTPEDTLPRHIGHEQRSVDLLKGLCERLRVPA 294
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D +A L H + I++V W+KP
Sbjct: 295 DCRDLAMLVARYHSHVHKARELRADTIVKVFDACDLWRKPE 335
>gi|163859075|ref|YP_001633373.1| tRNA CCA-pyrophosphorylase [Bordetella petrii DSM 12804]
gi|163262803|emb|CAP45106.1| tRNA nucleotidyltransferase [Bordetella petrii]
Length = 368
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 18/225 (8%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ IVGGAVRD+L+ D D P+ + R IP + +
Sbjct: 16 GLQVYIVGGAVRDALLGQPAGDRDWVVVGATPEDMARR------GFIPVGGDF--PVFLH 67
Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVG 140
+ + R++ + Y F + D LRRD T+NA+ QG+++D +
Sbjct: 68 PRTKEEYALARTERKSGRGYKGFTFYTGADVTLEQDLLRRDLTVNAIARTPQGQLLDPLN 127
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLK 198
G D+R R ++ +G+A ED +RILR RF A +G+ + D L + +
Sbjct: 128 GAADVRARVLRHVGEA---FAEDPVRILRLGRFAARFGDFTVAPDTLALCRRMVENGEVD 184
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
L ER+W E+++ L A P + + G + +Q+I +
Sbjct: 185 ALVPERVWKELSRGLMAATPSRMLDVLAQSGALARVMPQLQDIDI 229
>gi|261378744|ref|ZP_05983317.1| multifunctional CCA protein [Neisseria cinerea ATCC 14685]
gi|269144899|gb|EEZ71317.1| multifunctional CCA protein [Neisseria cinerea ATCC 14685]
Length = 417
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 71/340 (20%), Positives = 128/340 (37%), Gaps = 16/340 (4%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
++ +VGGAVRD L+ L V+D D + ++ P + + K
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVG--ADARTMLAQ---GFQPVGKDF--PVFLHPKT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ + R++ T YA F D + D +RRD TINA+ D G +ID GG
Sbjct: 55 HEEYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDSDGLIIDPFGGQQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-SS 202
DL+ ++ + ED +RILR RF A YG + + + + G +
Sbjct: 115 DLKAGILRHV---SPAFDEDPVRILRTARFAARYGFEIAEETMKLMRKMVENGEADALVA 171
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
ER+W E+ K L KNP I + G K + +V + E
Sbjct: 172 ERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPEVDALFGVPQRADYHPEIDSGIHTLM 231
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
L+ + + ++ + ++ + + + E+ +
Sbjct: 232 TLQRAADMGLTLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVHEVNQRLRAPKH 290
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 291 CAELAELVCRWHIIFHQVGQLKSRTILNVLKKTDAFRRPE 330
>gi|297832374|ref|XP_002884069.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297329909|gb|EFH60328.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 761
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/259 (21%), Positives = 102/259 (39%), Gaps = 37/259 (14%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+L LL + + +VGG VRD +++ +D D+ TT ++ R+F + + +
Sbjct: 81 VLRLLRRQGFDAYLVGGCVRDLILHRVPKDYDVITTANLKQIRRLFHRAQV----IGKRF 136
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAK------------------------------V 107
+ ++++ + +D +
Sbjct: 137 PICHVWMGGSIIEVSSFDTVAHSDSEHEDDLEKSKEKSGVSLDTEANKNNSLFTMYSGWD 196
Query: 108 VFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166
V + +SL+RDFTIN+L+ + K+ DY G+ DL + ++ + AH ED R
Sbjct: 197 VKDCNRWRNSLQRDFTINSLFYNPFELKIYDYANGMEDLTDLKLRTLVPAHLSFKEDCAR 256
Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226
ILR R A G ++ D A + + L R+ E+N +L +I+ +
Sbjct: 257 ILRGLRIAARLG-LSLSKDIETAIPEFVSSVANLDQFRLIMEMNYMLAYGAAAPSILLLM 315
Query: 227 NGGIFKEIFLDVQEISLDQ 245
+ + Q LDQ
Sbjct: 316 KFKLLHVLLP-FQAAYLDQ 333
>gi|198282536|ref|YP_002218857.1| polynucleotide adenylyltransferase region [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218667162|ref|YP_002424726.1| polyA polymerase family protein [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198247057|gb|ACH82650.1| Polynucleotide adenylyltransferase region [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218519375|gb|ACK79961.1| polyA polymerase family protein [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 456
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/445 (13%), Positives = 140/445 (31%), Gaps = 58/445 (13%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
L +L+ L + + +VGG RD+L+ ++ D D+ L + ++ ++P
Sbjct: 8 ALTPVLTALQRAGAEILVVGGTPRDALLGMAAHDWDLEIHGLSE------ARLGECLMPF 61
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ- 132
+ + + + + ++ W+ + RRDF++NAL D +
Sbjct: 62 G-----AHRVGGRCAVWVVAGAEIALPQAQGGRIDPHLPWEIAAQRRDFSVNALIWDWRT 116
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN----------- 181
+++D+ GG++DL R ++ + ED LR+ R R G
Sbjct: 117 QRLLDHFGGVDDLHARRLRMVSA--DSFGEDPLRVFRAARLAGQLGFSIEARTAALCRQL 174
Query: 182 ----IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
+ + L + L A + + + +
Sbjct: 175 APRLQHVPEERLRKEWEALLLRGQHLIRAWDSLALTGAVTRFPELHALQAVPQRPDAHPE 234
Query: 238 VQ----------------------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK 275
+I L + + + + + D R+ + +
Sbjct: 235 GDVWIHTGRVLAAAGQLRSGDRSRDIILMLGALLHDLGKAGTTRRDPQGRWRAFGHERAR 294
Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF--- 332
+ S ++ R + ++ + L + Y + + +
Sbjct: 295 TAAESFLSRYFPGRHLSRQILPVIRWHGAPYALYRDGAGRAAYAHLALQVPDLSLLLDVA 354
Query: 333 --LALHYNNLTHQDTCFILQVLSDIIHWK-KPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
A ++ ++ W P L G D++ G+ PG ++G L
Sbjct: 355 VADARGAGGEHPPAIDTARRLWQEMNAWPCLPKPLLKGPDLMALGLTPGPQLGKALALAH 414
Query: 390 QEWINSSFQLSQEDLHHLLRKLIAS 414
+ + + ++ L LR+ +
Sbjct: 415 ELQLVGACH-DRKRLMAELRRRLPE 438
>gi|119896784|ref|YP_931997.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Azoarcus
sp. BH72]
gi|166233841|sp|A1K2Q5|CCA_AZOSB RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|119669197|emb|CAL93110.1| tRNA-nucleotidyltransferase [Azoarcus sp. BH72]
Length = 412
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 65/345 (18%), Positives = 126/345 (36%), Gaps = 25/345 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD+L+ L V+D D PD ++ P + + +
Sbjct: 2 RTYVVGGAVRDALLGLPVKDRDWVVVGATPDEMLAR------GFRPVGKDF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ T YA F + D RRD TINA+ D G +ID GG+
Sbjct: 54 TQEEHALARTERKTGRGYAGFAFHTAPDVTLEEDLARRDLTINAIARDADGTLIDPYGGV 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200
DL R + + ED +RILR RF A + + ++ + L+ ++ + L
Sbjct: 114 ADLHGRVFRHV---SPAFAEDPVRILRVARFAARFADFSVAPETLALMRAMVDNGEVDHL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ER+W E + L +P I + + G + ++ + E +
Sbjct: 171 VAERVWQEFARGLMEAHPARMIRVLRDCGALARLLPELDRLFGVPQPAQHHPEIDTGEHV 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
++ + ++ + ++ + S +++
Sbjct: 231 LMVVEQAAARAHSLPVRWATLLHDLGKGET----PAAILPHHYGHEARSADLARQVSERL 286
Query: 321 GDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362
V L + +A + L +++VL ++P
Sbjct: 287 KAPVDCRDLAVMVAREHGILAQAAVLRAETMVKVLERCDALRRPE 331
>gi|261868441|ref|YP_003256363.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413773|gb|ACX83144.1| multifunctional CCA protein [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 434
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 76/354 (21%), Positives = 132/354 (37%), Gaps = 26/354 (7%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTIK 81
++ + +VGGAVRD L+NL VQD D P+ +++ K P
Sbjct: 2 SENHFQIYLVGGAVRDQLLNLPVQDRDWVIVGATPEALLQQGYHQVGKDFPVF------- 54
Query: 82 IICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
+ + + R++ G + + D +RRD TINA+ D QG + D
Sbjct: 55 -LHPQTKEEYALARTERKSGAGYTGFICDFSPDINLEQDLIRRDLTINAMAQDLQGNLFD 113
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA---- 193
GG DL NR ++ + +ED LR+LR RF A Y +
Sbjct: 114 PYGGAQDLANRVLRHV---SPAFVEDPLRVLRVARFAARYHYLGFKIAEETLQLMKDLTA 170
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
+ L+ L++ER+W+E K L KNP + G K +F ++ + E
Sbjct: 171 QGELQHLTAERVWAETEKALNEKNPEIYFETLRLVGALKVLFPELDALYGVPNPAKYHPE 230
Query: 254 QVFEWKIDSLLRFIVLISWQDKKS-----ILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+L+ L+S Q ++ + + + +
Sbjct: 231 IDSFVHTMMVLQQATLLSEQVDCHKSAVRFAAICHDLGKAKTPKQSW-PHHHGHEKLGMA 289
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ K + G +A+L H + + I+++ + W+KPL
Sbjct: 290 PTQSLCKRLKVPGYYQQLAELTCEYHTHIHKIFELRPETIVKLFNTFDVWRKPL 343
>gi|109899587|ref|YP_662842.1| metal dependent phosphohydrolase [Pseudoalteromonas atlantica T6c]
gi|122971671|sp|Q15QQ0|CCA_PSEA6 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|109701868|gb|ABG41788.1| metal dependent phosphohydrolase [Pseudoalteromonas atlantica T6c]
Length = 405
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 71/343 (20%), Positives = 114/343 (33%), Gaps = 19/343 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ +VGGAVRD L+ V+D D + + +K + + K
Sbjct: 2 QVYLVGGAVRDKLLERPVKDKDWVVVGASE--ADMLAK---GFQQVGKDF--PVFLHPKT 54
Query: 88 YFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ YA + D LRRD T+NA+ D G +ID G
Sbjct: 55 QQEYALARTERKIGQGYAGFECDTSTNVTLEQDLLRRDLTVNAMAMDDNGNIIDPFNGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----KI 199
DLRNR ++ + ED LR+LR RF A Y ++ A
Sbjct: 115 DLRNRVLRHV---SDAFEEDPLRVLRVARFAARYASYGFSIADETKTLMANITQSGELSH 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
LS+ER+W E K L P + G K F ++ + E
Sbjct: 172 LSAERVWVETAKSLLEDTPQIYFETLRECGALKVWFAELDCLWGIPNPAKWHPEIDTGIH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+L V +S + ++ + + + I + + +
Sbjct: 232 SMMVLEQSVRVSHKLSVRFAALVHDLGKG-LTPPEEWPSHRGHEKRGLVPINTLCERLKV 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D +A L H ++ I L W+KP
Sbjct: 291 PNDCRDLALLMSEFHSHVHHAFKLKAATINDFLDKCDVWRKPE 333
>gi|325134512|gb|EGC57157.1| multifunctional CCA protein [Neisseria meningitidis M13399]
gi|325205983|gb|ADZ01436.1| multifunctional CCA protein [Neisseria meningitidis M04-240196]
Length = 417
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 69/341 (20%), Positives = 125/341 (36%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A Y + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFAARYKFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E K L KNP I + G K + +V + E
Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + I+ VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVEKLRSKTIIDVLKKTDAFRRPE 330
>gi|254431966|ref|ZP_05045669.1| poly A polymerase family [Cyanobium sp. PCC 7001]
gi|197626419|gb|EDY38978.1| poly A polymerase family [Cyanobium sp. PCC 7001]
Length = 411
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 58/400 (14%), Positives = 112/400 (28%), Gaps = 30/400 (7%)
Query: 12 DSDLINILSLLNKGEDKS---------CIVGGAVRDSLMNLSV--QDIDIATTILPDRVM 60
D + L +VGGAVRD+L+ D+D+ +
Sbjct: 8 DEQARQVWRRLAPEGWPVPLETLPAGSALVGGAVRDALLGRLSAQPDLDLVVPGGAIGLC 67
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
R + GT ++ + LR + + D RR
Sbjct: 68 RELASRLG---------GTAVVLDPARDIARLVLRGWTVDLAGR----DGPSLETDLRRR 114
Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
D+T NA+ + + +L D LR+LR R +H
Sbjct: 115 DYTANAIALPLDDPPRLQDPTGGLADLAAGRLAAVSEANLLADPLRLLRGVRL-SHTLAL 173
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+ + L +S ER+++E+ KL + + + + D
Sbjct: 174 PLAPRSEDWIRHHARALGQVSGERVFTELEKLAAEPSGHRGLAWSLRHHLLESWAADATA 233
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
L + + + + LR+ + ++ + R+ +
Sbjct: 234 AG--PLEALDPEQALACGLDGAELRWALPLARLATLLPPAALGHLRASRQWQQRSARLRG 291
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ P +A L + ++ +
Sbjct: 292 WWQALEECPDPNALAEPQRLQLHADLAAELPAWLLRLPAAMAR--PWMERWRQPADPLFH 349
Query: 361 PLFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQL 399
P PL G + +PPG +G ++ H QE +
Sbjct: 350 PRSPLDGRQLQQALKLPPGPVLGELIRHLTQERAFGRIPI 389
>gi|21232836|ref|NP_638753.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|66767093|ref|YP_241855.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Xanthomonas campestris pv. campestris str. 8004]
gi|188990185|ref|YP_001902195.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Xanthomonas campestris pv. campestris str. B100]
gi|73619905|sp|Q8P5D4|CCA_XANCP RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|81306923|sp|Q4UYN8|CCA_XANC8 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702093|sp|B0RNU6|CCA_XANCB RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|21114662|gb|AAM42677.1| tRNA nucleotidyltransferase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66572425|gb|AAY47835.1| tRNA nucleotidyltransferase [Xanthomonas campestris pv. campestris
str. 8004]
gi|167731945|emb|CAP50131.1| multifunctional CCA protein [Xanthomonas campestris pv. campestris]
Length = 410
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 64/402 (15%), Positives = 128/402 (31%), Gaps = 57/402 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD+L+ D D P + + +
Sbjct: 2 KIYLVGGAVRDALLGQPAGDRDWVVVG-----ADQAQMQALGYKPVGKDF--PVFLHPRS 54
Query: 88 YFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGL 142
+ R++ + Y + + D LRRDFTINA+ D+ G+V D GG+
Sbjct: 55 GEEYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAIARDEASGEVFDPYGGV 114
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ R ++ +G A +ED +R+LR RF A A++ +
Sbjct: 115 RDLQQRVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFGIAPETAALMREMADSGELD 171
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER+W E+ ++L + P + +++ G + I ++ + E
Sbjct: 172 SLVPERVWQELRRVLGSAQPSAFLRTLHDTGALRAILPELDALYGVPQRAEFHPEVDTGV 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + ++ D + + + + + +
Sbjct: 232 HQEMVSDMAARLAPGDALVGFAALTHDLGKALTPPEQWPRHVMHEQRGVAPLQALCERLK 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ D +A L+ + L + ++L +++P
Sbjct: 292 VPQDYRQLAVTACREHLNVHRLPELRDRTVHELLVRCDGFRRPERIAQLALVCEADKRGR 351
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGN 383
+ D+ G+ G ++G
Sbjct: 352 LGSEEAAYPQGPELQRVHAAALAINARDLAADGLQ-GPQIGE 392
>gi|311109372|ref|YP_003982225.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Achromobacter xylosoxidans A8]
gi|310764061|gb|ADP19510.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Achromobacter xylosoxidans A8]
Length = 366
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 18/221 (8%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ IVGGAVRD+L+ L D D P+ + R +P + +
Sbjct: 9 GLQVYIVGGAVRDALLGLPPGDHDWVVVGATPEDMARR------GFVPVGGDF--PVFLH 60
Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVG 140
+ + R++ + Y F + D RRD T+NA+ Q G+++D +G
Sbjct: 61 PRSKEEYALARTERKSGRGYKGFTFYTGADVTLEEDLRRRDLTVNAIAQTQDGELVDPLG 120
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLK 198
G D+R+R + +G+A ED +RILR RF A +G+ ++ + + + +
Sbjct: 121 GAADVRDRIFRHVGEA---FEEDPVRILRLARFAARFGDFSVAPETIELCRRMVEAGEAD 177
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
L +ER+W E+++ L A P + + G + ++Q
Sbjct: 178 ALVAERVWKELSRGLMAAAPSRMLGILQQCGALARVMPELQ 218
>gi|157412665|ref|YP_001483531.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. MIT 9215]
gi|157387240|gb|ABV49945.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. MIT 9215]
Length = 415
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/389 (15%), Positives = 131/389 (33%), Gaps = 24/389 (6%)
Query: 23 NKGEDKSCIVGGAVRDSLMNL-------SVQDIDIATTILPDRVMRIFSKT----RYKVI 71
+ K VGG +RD L++ DID+ + + K + +I
Sbjct: 29 SNNNTKVAFVGGYLRDLLISKFHKKSFSKPVDIDLVIEGSSIALAKFIKKNIVNVDFCLI 88
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
Y T++I DI + R ++ + V + D RRDFTIN++ +
Sbjct: 89 KEFNVYNTVEININDYKIDIASARKEIYSAPGLNPTVTKSTIEEDLKRRDFTINSIAFEV 148
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ I + G + + I +D R++R ++ + ++ +
Sbjct: 149 STRKIYDLFGGISDIKSK-RLNLLHSNSISDDPSRLIRCAKYASRLDFNISNNSLKQSQE 207
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
K+ S R L + + + + I + L++ I+
Sbjct: 208 TVKQWPWKSSETRQKMIYPPALGIRIRMELAEIYKHDNLNNVISKIHTWEIISILNENIK 267
Query: 252 AEQVFEWKIDSLLR---FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
++ F ++ + + +L +D + + + ++F L L + N KT
Sbjct: 268 VDKKFLRGLNWIKKLNGNYMLYLLKDSEDLETACQRFLLNNSEIKILQDYSNIKKILKTN 327
Query: 309 SIPEIK---KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ + + + + L + + L + I K
Sbjct: 328 KTKFNHFSPSSWTEFIENKNLNDETVKLLICDGGPYWHNLFKWLFIYKFIKSKK------ 381
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
G+ + K G PGKK+G + + I+
Sbjct: 382 DGEILKKEGWDPGKKMGEEIKRLRYLEID 410
>gi|313668356|ref|YP_004048640.1| tRNA nucleotidyltransferase [Neisseria lactamica ST-640]
gi|313005818|emb|CBN87272.1| putative tRNA nucleotidyltransferase [Neisseria lactamica 020-06]
Length = 417
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 71/341 (20%), Positives = 127/341 (37%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFRPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++++ ED +RILR RF A YG + + + + G
Sbjct: 114 QDLAAGILRYV---SPAFAEDPVRILRTARFAARYGFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G K + +V + E
Sbjct: 171 AERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPEVDALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-PDILPRHYGHDINGVEPVREVNRRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 YCAELAELVCRWHIIFHQVGQLKSRTILNVLKKTDAFRRPE 330
>gi|163751935|ref|ZP_02159147.1| putative tRNA nucleotidyltransferase [Shewanella benthica KT99]
gi|161328151|gb|EDP99317.1| putative tRNA nucleotidyltransferase [Shewanella benthica KT99]
Length = 413
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 121/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+ L V+D D + ++++ + + +
Sbjct: 2 KIYLVGGAVRDSLLKLPVKDRDYLVVGATQEQMLAK------GFHRVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ T Y + D LRRD T+NA+ D GK+ D GG+
Sbjct: 54 TQQEYALARTERKTGSGYGGFSCHASPDVTLEQDLLRRDLTVNAIAQDDDGKLYDPYGGV 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
+DL N+ ++ + +ED LR+LR RF A + + ++ A
Sbjct: 114 DDLNNKLLRHV---SDAFIEDPLRVLRVARFAARFHAQGFTIADETLTMMANISQSGELE 170
Query: 203 ERIWSEINK----LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ + L NP I + G K +F ++ + + E
Sbjct: 171 ALTAERVFQELDKALSTDNPHIFIDVLEQCGALKILFPEIHALFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L ++ + ++ + + + + + I +
Sbjct: 231 HTLMVLEQAAKLTKDNTVRFAALVHDLGKALSPKEH-LPKHHGHGQKGLAPIKALCARIK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L L + +N+ ++++ W+KP
Sbjct: 290 APNEYRDLALLVSDLHQNIHNIDQLRPETLIKLFDKADLWRKPQ 333
>gi|325202065|gb|ADY97519.1| multifunctional CCA protein [Neisseria meningitidis M01-240149]
gi|325208181|gb|ADZ03633.1| multifunctional CCA protein [Neisseria meningitidis NZ-05/33]
Length = 417
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 70/341 (20%), Positives = 125/341 (36%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A Y + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFAARYKFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E K L KNP I + G K + +V + E
Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|254787093|ref|YP_003074522.1| multifunctional CCA protein [Teredinibacter turnerae T7901]
gi|259585854|sp|C5BPQ5|CCA_TERTT RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|237687060|gb|ACR14324.1| multifunctional CCA protein [Teredinibacter turnerae T7901]
Length = 411
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 74/419 (17%), Positives = 128/419 (30%), Gaps = 71/419 (16%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ + D P +++ P + + +
Sbjct: 2 KIYLVGGAVRDQLLGYPHHEQDWVVVGATPQQMLDA------GFKPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYA----KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R + T Y T + D LRRD TINA+ D++G +ID G
Sbjct: 54 TQEEYALARQERKTAPGYTGFAFHADETVTLEQDLLRRDLTINAIAMDEEGTIIDPYNGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
D+ RT++ + ED +RILR RF A Y + + +
Sbjct: 114 RDIETRTLRHV---SQAFCEDPVRILRIARFAARYHHLGFRIAPETLALMRDMVQAGEVD 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL------------ 246
L +ER+W E+++ LE ++P I + G + ++ +
Sbjct: 171 HLVAERVWKELSRALEEQHPAIFIQTLRECGALHRLMPELNALFGIPQPEAHHPEVDTGV 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR----------------- 289
++ E+ E +RF LI K
Sbjct: 231 HALLALERACELSSTPEVRFAALIHDLGKGVTPKHLWPSHHGHEQDGVALVEQLCNRLST 290
Query: 290 --------------EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335
N KTL + + + + +
Sbjct: 291 PNQFRELAVAVCAYHTHCHRAFELNAKTLLKTLLALDGLRRPERFQQFCLCCQADAQGRT 350
Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
N + + LQ L +I + V G G ++G + + + I
Sbjct: 351 GLENRPYPQAAYFLQALEEIQK-------VDAKMFVAQG-KKGAEIGEAMYSARLQKIK 401
>gi|313496760|gb|ADR58126.1| Cca [Pseudomonas putida BIRD-1]
Length = 368
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 73/369 (19%), Positives = 122/369 (33%), Gaps = 27/369 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGAVRD L+ DID + ++ P + + K
Sbjct: 3 IYKVGGAVRDRLLGRPFSDIDWLVVGATVEEMLAK------GYRPVGADF--PVFLHPKT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y F + D +RRD TINA+ D+ G V D G N
Sbjct: 55 GEEYALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEAGTVYDPYQGKN 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS- 202
DL R ++ + ED LR+LR RF A Y ++ +
Sbjct: 115 DLDQRLLRHV---SPAFAEDPLRVLRVARFAARYAPLGFRVADETLALMRQISASGELQA 171
Query: 203 ---ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFE 257
ER W EI + L P + G +E+ ++ + S L L Q EQ
Sbjct: 172 LTAERSWKEIERALMEVQPQVFFKVLSACGALQELLPELDDGSRTLAALEQAAAHEQPLH 231
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ LLR + S + L ++ + ++ N ++ E+ + F
Sbjct: 232 VRWACLLRGLPPTSIKAVNQRLKAPRECQELAMLAGECLAQGNQALELPATALLELLQKF 291
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
+Y + Q + + +V+ G+
Sbjct: 292 DVYRRPQRFEDFLAVCEMAARGDGKQGYP----QADYLRGAAAAARAVDVKPLVQAGLT- 346
Query: 378 GKKVGNILV 386
G+ +G L
Sbjct: 347 GQALGEALK 355
>gi|297539582|ref|YP_003675351.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Methylotenera sp. 301]
gi|297258929|gb|ADI30774.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Methylotenera sp. 301]
Length = 402
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/341 (17%), Positives = 123/341 (36%), Gaps = 19/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ LSV+D D P+ + YK P + + K
Sbjct: 2 QIYLVGGAVRDELLGLSVKDKDYVVVGSTPEEM----EAAGYK--PVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ G + D RRD TINA+ G++ID GL
Sbjct: 54 THDEYALARTERKTAKGYKGFAVHASVDVTLEEDLARRDLTINAIAKSVDGQLIDPYHGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKIL 200
D++++T++ + ED +RILR R A + + ++ + + L
Sbjct: 114 ADIQSKTLRHV---SAAFAEDPVRILRAARLSARFADFSVAPETNQLMQDMVSAGEVDAL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ER+W E+ K L P + G K+I ++ ++ E +
Sbjct: 171 VAERVWQELAKGLMEAKPSRMFDVLRACGALKKIMPELDKLWGVPQPPQHHPEVDTGVHV 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
++ + S+ ++ + + + + + + K +
Sbjct: 231 MMVIDYAAKQSFSLPVRFAALMHDLGKGTTLAEI-LPRHIGHEERSANLLKALCKRLRVP 289
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
D + + + +L+ L ++ ++P
Sbjct: 290 NDCKELGHIVAKFHGKLHQAPQMKPSTLLEFLVELDAIRQP 330
>gi|319638294|ref|ZP_07993057.1| phosphatase [Neisseria mucosa C102]
gi|317400567|gb|EFV81225.1| phosphatase [Neisseria mucosa C102]
Length = 420
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 72/341 (21%), Positives = 129/341 (37%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L+ L V+D D ++ P + +
Sbjct: 7 KTYLVGGAVRDHLLGLPVKDRDWVIVGADAQTMLA------QGYQPVGKDF--PVFLHPD 58
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D G +ID GG
Sbjct: 59 SHEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGTIIDPFGGQ 118
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL + ++ + ED +RILR RF A YG + D + + G
Sbjct: 119 QDLADGILRHV---SPAFAEDPVRILRIARFAARYGFQIADETMSLMRQMVENGEADALV 175
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G K + ++ + E
Sbjct: 176 AERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPELDALFGVPQRADYHPEIDSGIHTL 235
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+++ ++ + ++ + L + + N + E+ +
Sbjct: 236 MVVQRAAEMNLSLAERYAALLHDLGKAKTPADILPKHYEHDIN-GVEPVREVNQRLRAPK 294
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL+VL +++P
Sbjct: 295 HCAELAELVCRWHIMFHQVGQFKSKTILKVLKKTDAFRRPE 335
>gi|241758902|ref|ZP_04757015.1| multifunctional CCA protein [Neisseria flavescens SK114]
gi|241321110|gb|EER57323.1| multifunctional CCA protein [Neisseria flavescens SK114]
Length = 420
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 70/340 (20%), Positives = 125/340 (36%), Gaps = 16/340 (4%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K+ +VGGAVRD L+ L V+D D + ++ P + +
Sbjct: 7 KTYLVGGAVRDHLLGLPVKDRDWVVVG--ADAQNMLAQ---GYQPVGKDF--PVFLHPDS 59
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ + R++ T YA F D + D +RRD TINA+ D G +ID GG
Sbjct: 60 HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGTIIDPFGGQQ 119
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-SS 202
DL ++ + ED +RILR RF A YG + D + + G +
Sbjct: 120 DLAAGILRHV---SPAFAEDPVRILRIARFAARYGFQIADETMSLMRQMVENGEADALVA 176
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
ER+W E+ K L KNP I + G K + ++ + E
Sbjct: 177 ERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPELDALFGVPQRADYHPEIDSGIHTLM 236
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
+++ ++ + ++ + + + + E+ +
Sbjct: 237 VVQRAAEMNLSLAERYAALLHDLGKAKTPADI-LPKHYGHDVNGVEPVREVNQRLRAPKH 295
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + + + + IL VL +++P
Sbjct: 296 CAELAELVCRWHIMLHQVGQFKSKTILNVLKKTDAFRRPE 335
>gi|219681999|ref|YP_002468383.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|254813689|sp|B8D6X3|CCA_BUCAT RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|219621732|gb|ACL29888.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
Length = 414
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 74/345 (21%), Positives = 126/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRDSL+NL V+D D +++ + + + + +
Sbjct: 2 KIYLVGGAVRDSLLNLPVKDKDWVVVGGTEKI--LLERN---FQQVGKDF--PVFLHPET 54
Query: 88 YFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ + R + G + D +RRD TINA+ D+ G ID G
Sbjct: 55 HEEYALARKERKSGKGYTGFDTDCNSDVTLEEDLIRRDLTINAIAQDEYGNYIDPFQGKK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL--- 200
D+ I+ + +ED LR+LR RF A + K
Sbjct: 115 DIECGLIRHV---SESFIEDPLRVLRVARFAATLVHLGFKIAEETMLLMCIIVKKQELSY 171
Query: 201 -SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ-LSQVIEAEQVFEW 258
+S RIW+E K L+ NP +Y F ++ + + ++
Sbjct: 172 LTSNRIWNETEKALKTLNPHVYFQVLYECNALHFFFPEMYFLYEKKNFLNRSFFKKFCNK 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREI-RYFLISFFNCNFNQKTLSIPEIKKLF 317
I + + + +D S +F +I R + FF+ S+ + K+
Sbjct: 232 NIILMGLAEISLLNKDIDVRFSYLCQFLSVNQIDRNYSKIFFDSYAASIIHSLCKRFKIP 291
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D IA L N + +Q + I+ + S + W+KP
Sbjct: 292 SYIRD---IAVLNTGFYFFLNTIHYQSSKNIINLFSKVDAWRKPD 333
>gi|26987136|ref|NP_742561.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas putida KT2440]
gi|73619823|sp|Q88QU2|CCA_PSEPK RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|24981767|gb|AAN66025.1|AE016231_8 tRNA nucleotidyltransferase, putative [Pseudomonas putida KT2440]
Length = 368
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 75/369 (20%), Positives = 125/369 (33%), Gaps = 27/369 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGAVRD L+ V DID + ++ Y+ P + + K
Sbjct: 3 IYKVGGAVRDRLLGRPVSDIDWLVVGATVEEMLA----NGYR--PVGADF--PVFLHPKT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y F + D +RRD TINA+ D+ G V D G N
Sbjct: 55 GEEYALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEAGTVYDPYQGKN 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS- 202
DL R ++ + ED LR+LR RF A Y ++ +
Sbjct: 115 DLDQRLLRHV---SPAFAEDPLRVLRVARFAARYAPLGFRVADETLALMRQISASGELQA 171
Query: 203 ---ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFE 257
ER W EI + L P + G +E+ ++ + S L L Q EQ
Sbjct: 172 LTAERSWKEIERALMEVQPQVFFKVLSACGALQELLPELDDGSRTLAALEQAAAHEQPLN 231
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ LLR + S + L ++ + ++ N ++ E+ + F
Sbjct: 232 VRWACLLRGLPPTSIKAVNQRLKAPRECQELAMLTGECLAQGNQALELPATALLELLQKF 291
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
+Y + Q + + +V+ G+
Sbjct: 292 DVYRRPQRFEDFLTVCEMAARGDGEQGYP----QADYLRGAAAAARAVDVKPLVQAGLT- 346
Query: 378 GKKVGNILV 386
G+ +G L
Sbjct: 347 GQALGEALK 355
>gi|288940943|ref|YP_003443183.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Allochromatium vinosum DSM 180]
gi|288896315|gb|ADC62151.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Allochromatium vinosum DSM 180]
Length = 422
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/346 (17%), Positives = 126/346 (36%), Gaps = 21/346 (6%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
++ +VGGAVRD L+ + + D + + ++ + K P +
Sbjct: 14 GLETYLVGGAVRDLLLGRTTHEHDYVVVGASVEEMLARGFRQVGKDFPVF--------LH 65
Query: 85 RKKYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140
+ + R++ T Y + D LRRD T+NA+ D G+VID G
Sbjct: 66 PENQDEYALARTERKTAPGYRGFQVQAHPDVTLEEDLLRRDLTVNAMAMDADGRVIDPHG 125
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKAKKG 196
GL DL+ R ++ + ED +RILR R + ++ L ++ A
Sbjct: 126 GLADLKARILRHV---SPAFAEDPVRILRLARLATRFVGLGFRIAEETLELTRAMVAAGE 182
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
+ L +R+W E+++ L + P + + G + ++ + + E
Sbjct: 183 VDALVPDRVWQEMSRALGEERPARFFEVLRDCGALARLLPEIDRLWGVPQTPKWHPEIDT 242
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+ +L IS + + ++ ++ + + + + I
Sbjct: 243 GVHVMMVLDMAARISPELEVRFAALCHDLGKG-TTPPEILPSHHGHEERGLPMVEAICDR 301
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
F + +A+L + + T IL + +++P
Sbjct: 302 FRVPNRCRELARLTAAEHGRVHKVDELRTGTILDLFERTDAFRRPE 347
>gi|91794174|ref|YP_563825.1| polynucleotide adenylyltransferase region [Shewanella denitrificans
OS217]
gi|123165855|sp|Q12KC4|CCA_SHEDO RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|91716176|gb|ABE56102.1| metal dependent phosphohydrolase [Shewanella denitrificans OS217]
Length = 413
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 126/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ L+++D D + P ++ + + K P + K
Sbjct: 2 KIYLVGGAVRDALLGLTIKDKDYLVVGSTPAEMLSLGYRQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLR----SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R + DG + D LRRD TINA+ D+QG++ D GG
Sbjct: 54 NQQEYALARIERKTGTGYDGFSCDANEHVSLEEDLLRRDLTINAIAQDEQGQLHDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK----GLK 198
D+ ++ ++ + +ED LR+LR RF A + ++ ++ L+
Sbjct: 114 QDIIHKQLRHV---SQAFVEDPLRVLRVARFAARFHSLGFTVATETMALMSQISLSGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E + L P + G + +F ++ + + E
Sbjct: 171 HLTAERVWQECERALATDEPQVFFEVLAQCGALEVLFPEIHALFGVPQPEKWHPEIDTGK 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L+ + D + + + + + I + +
Sbjct: 231 HTLLSLK-QASLLTDDMAIRFATLVHDLGKALSPKESLPKHHGHGQKGLPLIKQFCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +A L + +N ++ + W+KP
Sbjct: 290 VPNDYRDLALLVSDQHQNIHNAFELKASTLVSLFDKGDFWRKPE 333
>gi|15616686|ref|NP_239898.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681443|ref|YP_002467828.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|257471118|ref|ZP_05635117.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|11386685|sp|P57169|CCA_BUCAI RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|254813688|sp|B8D8L9|CCA_BUCA5 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|25288659|pir||H84936 tRNA adenylyltransferase (EC 2.7.7.25) [imported] - Buchnera sp.
(strain APS)
gi|10038749|dbj|BAB12784.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219624286|gb|ACL30441.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311085805|gb|ADP65887.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086380|gb|ADP66461.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311086958|gb|ADP67038.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
Length = 414
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 74/345 (21%), Positives = 126/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRDSL+NL V+D D +++ + + + + +
Sbjct: 2 KIYLVGGAVRDSLLNLPVKDKDWVVVGGTEKI--LLERN---FQQVGKDF--PVFLHPET 54
Query: 88 YFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ + R + G + D +RRD TINA+ D+ G ID G
Sbjct: 55 HEEYALARKERKSGKGYTGFDTDCNSDVTLEEDLIRRDLTINAIAQDEYGNYIDPFQGKK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL--- 200
D+ I+ + +ED LR+LR RF A + K
Sbjct: 115 DIECGLIRHV---SESFIEDPLRVLRVARFAATLVHLGFKIAEETMLLMCIIVKKQELSY 171
Query: 201 -SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ-LSQVIEAEQVFEW 258
+S RIW+E K L+ NP +Y F ++ + + ++
Sbjct: 172 LTSNRIWNETEKALKTLNPHVYFQVLYECNALHFFFPEMYFLYEKKNFLNRSFFKKFCNK 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREI-RYFLISFFNCNFNQKTLSIPEIKKLF 317
I + + + +D S +F +I R + FF+ S+ + K+
Sbjct: 232 NIILMGLAEISLLNKDIDVRFSYLCQFLSVNQIDRNYSKIFFDSYAASIIHSVCKRFKIP 291
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D IA L N + +Q + I+ + S + W+KP
Sbjct: 292 SYIRD---IAVLNTGFYFFLNTIHYQSSKNIINLFSKVDAWRKPD 333
>gi|33860861|ref|NP_892422.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|33633803|emb|CAE18762.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 415
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 66/417 (15%), Positives = 143/417 (34%), Gaps = 45/417 (10%)
Query: 10 FHDSDLINI----LSLLNKG-----EDKSCIVGGAVRDSLMNL-------SVQDIDIATT 53
+ +S ++ I +++++ K IVGG +RD L+ + DIDI T
Sbjct: 7 YINSAILKIPFNLFNIISQYIELNSSVKVAIVGGYIRDLLITKIHKKTFFNPLDIDIVTE 66
Query: 54 ILPDRVMRIFSKT----RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVF 109
+ + K +I Y T+++ DI + R + +V
Sbjct: 67 GSSVDLAKFIKKNISNVELCLIKEFEIYDTVELNINDLKIDIASARKEKYEAPGLNPIVK 126
Query: 110 TRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169
+ K D RRDF+INA+ + + I + + I +D R++R
Sbjct: 127 HANIKEDLKRRDFSINAIAFEFSKQEIYDFFDGIKHIQEKELHL-LHENSIQDDPSRLIR 185
Query: 170 FFRFFAHYGE-------KNIDSDGLVASIKAKKGLKILSSE-----RIWSEINKLLEAKN 217
R+ + + K RI E+ ++ + N
Sbjct: 186 CARYASRLDFKISSKSLQQSQKTIQRWPWDMMKDDVKSKFPPGISIRIRMELAEIYKYDN 245
Query: 218 PLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+ + + I + ++ I+ L + +++ I LL+ + ++
Sbjct: 246 LAKIVSLLNDWEIISILNKNIS-INNKFLRGLKWIKKLKGNYILYLLKNSENLELTCQRF 304
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
++ ++I ++ N N+K + + + + + + L +
Sbjct: 305 FINSK-----EKKILKDYLNITNQLDNEKEKFLYLTPSQWTEFIETKNLDDETVKLLICN 359
Query: 338 NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
L + L V I K +G+ + G PGK++G+ + + I+
Sbjct: 360 EGLFWKSFFKWLFVYKFIKSKK------SGEFLKSEGWQPGKEMGDEIKRLRYLEID 410
>gi|291618936|ref|YP_003521678.1| Cca [Pantoea ananatis LMG 20103]
gi|291153966|gb|ADD78550.1| Cca [Pantoea ananatis LMG 20103]
Length = 429
Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 64/347 (18%), Positives = 120/347 (34%), Gaps = 27/347 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD+L+ L V+D D P+ ++ + + P +
Sbjct: 26 KTFLVGGAVRDALLKLPVKDKDWVVVGATPEAMLEQGYQQVGRDFPVF--------LHPD 77
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y + D RRD TINA+ D QG++ D G
Sbjct: 78 SREEYALARTERKNGKGYTGFTTWSAPDVTLEQDLQRRDLTINAIARDAQGELYDPYHGQ 137
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
D+ +R ++ + ED LR+LR RF A + N ++ +
Sbjct: 138 KDIADRQLRHV---SDAFSEDPLRVLRVARFAARFAHLNFRIADETQALMRQMAESGELA 194
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E K L + NP + + G + +F ++ + E
Sbjct: 195 DLTAERVWKETEKALSSHNPQVYFQVLRDCGALQGLFPEIDNLFGVPAPARWHPEIDTGV 254
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S ++I + + + +P + L
Sbjct: 255 HTLMALTLSAGLS----EAIDVRFATLFHDVGKALTPVEKWPSHHGHGPAGVPLVAALCQ 310
Query: 319 LYGDKVMIAKLKIF---LALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
I L + + + + ++ + + W+KP
Sbjct: 311 RLRVPNAIRDLALLVTEFHDMMHTIEQRPADALIGLFDRLDAWRKPE 357
>gi|330721269|gb|EGG99360.1| tRNA nucleotidyltransferase [gamma proteobacterium IMCC2047]
Length = 406
Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 117/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L+ + D ++++ + K P + K
Sbjct: 2 KTYLVGGAVRDELLGYPFHERDWVVVGATAEQMLEKGYQQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ G + D LRRD TINA+ D+ G+++D G
Sbjct: 54 SHEEYALARTERKSGKGYTGFICHSAPDVTLEEDLLRRDLTINAIAKDENGELVDPYNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
D+ NR ++ + ED LRILR RF A Y ++ +
Sbjct: 114 QDIENRVLRHV---SAAFAEDPLRILRVARFAARYYHLGFRIADETLALMQQMVDVGEAG 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER+W EI+ L + P + G K + ++ + + E
Sbjct: 171 HLVPERVWKEIHSALTTQTPAEFFRVIRACGALKVLIPELDALFGVPQPKAHHPEIDTGE 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
I L+ +S ++ + + + + +
Sbjct: 231 HIMLALQMAAQLSASTTVRYATLMHDLGKALTPADQWPKHY-GHDVLGVKPVNVVGERLK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A+L L + + +L+++ ++P
Sbjct: 290 VPKQFTELARLSAALHIRCHICQEMRPVKLLELIEAADAMRRPD 333
>gi|308188139|ref|YP_003932270.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Pantoea vagans
C9-1]
gi|308058649|gb|ADO10821.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Pantoea vagans
C9-1]
Length = 421
Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 121/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD+L+NL V D D T P+ ++ + + P +
Sbjct: 13 KTFLVGGAVRDALLNLPVTDKDWVVTGSTPEVMLEQGYQQVGRDFPVF--------LHPV 64
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y V + D RRD TINA+ D+ G+++D G
Sbjct: 65 SREEYALARTERKNGKGYTGFVTWSAPDVTLEQDLQRRDLTINAIAQDENGELVDPYNGQ 124
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
D+ R ++ + ED LR+LR RF A + N + +
Sbjct: 125 RDIAQRLLRHV---SEAFSEDPLRVLRVARFAARFAHLNFRIAPETQQLMQQMAESGELS 181
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E K L ++NP + + G + +F ++ + E
Sbjct: 182 NLTAERVWKETEKALSSRNPQVYFQVLRDCGALQVLFPELDNLFGIPAPIKWHPEIDTGV 241
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + + L + + + + +
Sbjct: 242 HTLMTLAMAAALS-SEIDMRFATLFHDVGKALTPPELWPSHHGHGLAGVPLVEALCQRLR 300
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A + + + Q ++ + I W+KP
Sbjct: 301 VPNAIRDLALIVTEFHDIVHTIERQSAASLVALFDRIDAWRKPQ 344
>gi|107099570|ref|ZP_01363488.1| hypothetical protein PaerPA_01000583 [Pseudomonas aeruginosa PACS2]
gi|254243678|ref|ZP_04937000.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa 2192]
gi|296387090|ref|ZP_06876589.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas aeruginosa PAb1]
gi|126197056|gb|EAZ61119.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa 2192]
Length = 410
Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 77/413 (18%), Positives = 136/413 (32%), Gaps = 59/413 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ V DID D ++ P + + +
Sbjct: 2 QIYKVGGAVRDRLLGRPVTDIDWVVVGASSDEMLAR------GYRPVGADF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D RRD TINA+ D+QG+VID GG
Sbjct: 54 SGEEYALARTERKSGRGYGGFTFHASPEVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 ADLEARLLRHV---SPAFAEDPLRVLRVARFAARYAGLGFRVAAETLALMRQLAESGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER W EI++ L NP I +++ G E+ +V+ + E
Sbjct: 171 ALTPERSWKEISRALMEPNPEVFIQVLHDCGALAELIPEVEALFGVPQPAAHHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ S+L+ + + + I + + F
Sbjct: 231 HVLSVLQQCARHRQPLSVRWACLLHDLGKGLTSEADWPRHIA-HEARGVPLIDAVNQRFR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ D +A+L H + +L++L +++P
Sbjct: 290 VPRDCQELARLVGEYHTHAHRALELRPNTLLELLQSFDVYRRPQRFEEFVAASEMDARGR 349
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
++ +V+ G+ G ++G L + +
Sbjct: 350 LGLEQRDYPQAAYLLGAAQAARAVSVKPLVEKGLK-GAELGEALKRARLAALK 401
>gi|71909744|ref|YP_287331.1| metal dependent phosphohydrolase [Dechloromonas aromatica RCB]
gi|123626227|sp|Q477X0|CCA_DECAR RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|71849365|gb|AAZ48861.1| metal dependent phosphohydrolase [Dechloromonas aromatica RCB]
Length = 412
Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 63/342 (18%), Positives = 120/342 (35%), Gaps = 19/342 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ IVGGAVRD L+ D D + P+ ++ P + +
Sbjct: 2 QIYIVGGAVRDELLGRPNADCDYVVVGATPETMLA------QGFRPVGKDF--PVFLHPN 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFT----RDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y +F + D RRD TINA+ G ++D G
Sbjct: 54 THDEYALARTERKTGHGYHGFIFHAAADVTLEEDLARRDLTINAMAKAADGTLVDPFNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200
DL ++T++ +G A ED +RILR RF A + + ++ + L+ S+ A + L
Sbjct: 114 QDLASKTLRHVGPA---FAEDPVRILRIARFAARFSDFSVAPETLALMRSMVACGEVDHL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ER+W E+ K L + P + + G + +V ++ E
Sbjct: 171 VAERVWQELAKGLMEQKPSRMFEVLRDCGALARLLPEVDKLFGVPQRADYHPEIDTGIHT 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
++ ++ ++ L L+ + +
Sbjct: 231 MMVIDQSARRTFTLPVRFAALTHDLGKAETPADILPRHIGHEERSVRLTEQLCAR-LRVP 289
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D +A L + + I+ + ++P
Sbjct: 290 NDCRDLALLTARYHGNIHRAADLKASTIVTLFEKTDALRRPE 331
>gi|261380940|ref|ZP_05985513.1| multifunctional CCA protein [Neisseria subflava NJ9703]
gi|284796196|gb|EFC51543.1| multifunctional CCA protein [Neisseria subflava NJ9703]
Length = 420
Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 70/341 (20%), Positives = 124/341 (36%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L+ L V+D D ++ P + +
Sbjct: 7 KTYLVGGAVRDHLLGLPVKDRDWVVVGADAQTMLA------QGYQPVGKDF--PVFLHPD 58
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TIN++ D G +ID GG
Sbjct: 59 SHEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINSMAQDSDGTIIDPFGGQ 118
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A YG + D + + G
Sbjct: 119 QDLAAGILRHV---SPAFAEDPVRILRIARFAARYGFQIADETMSLMRQMVENGEADALV 175
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G K + +V + E
Sbjct: 176 AERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPEVDALFGVPQRADYHPEIDSGIHTL 235
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+++ ++ + ++ + + + + E+ +
Sbjct: 236 MVVQRAAEMNLSLAERYAALLHDLGKAKTPADI-LPKHYGHDLNGVEPVREVNQRLRAPK 294
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + + + + IL VL +++P
Sbjct: 295 HCAELAELVCRWHIMLHQVGQFKSKTILNVLKKTDAFRRPE 335
>gi|319761322|ref|YP_004125259.1| polynucleotide adenylyltransferase region protein [Alicycliphilus
denitrificans BC]
gi|317115883|gb|ADU98371.1| Polynucleotide adenylyltransferase region protein [Alicycliphilus
denitrificans BC]
Length = 415
Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 56/345 (16%), Positives = 113/345 (32%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ V D D P+ ++ +P + + +
Sbjct: 2 QIYMVGGAVRDRLLGRPVNDHDWVVVGARPEDMVAR------GFVPVGRDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQG-KVIDYVGG 141
+ + R++ + Y V + D RRD TINA+ A
Sbjct: 54 THEEYALARTERKSGRGYRGFVVQASPDVTLEEDLSRRDLTINAIAASADWIGADGLFDP 113
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKI 199
R+ + + ED +RILR RF A + + + + + + +
Sbjct: 114 YGGARDLERRVLRHVTDAFREDPVRILRVARFAARFTDFTVAPETMALMREMVQAGEADH 173
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L +ER+W E+++ L + P + G + +V+ + E
Sbjct: 174 LVAERVWQELSRGLMEEKPSRMFDVLRACGALAVVLPEVERLWGVPQRAEHHPEVDTGVH 233
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ +L +S + + + + S +K +
Sbjct: 234 LMMVLDMAARLSAP----LAVRFACLTHDLGKGTTPADVLPRHIGHEQRSGKLLKAVAER 289
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTC---FILQVLSDIIHWKKP 361
V +L +A + N+ ++++L +KP
Sbjct: 290 LRVPVDCRELADVVAREHGNIHRSGELGATALVRLLERCDAIRKP 334
>gi|15895332|ref|NP_348681.1| tRNA nucleotidyltransferase family protein [Clostridium
acetobutylicum ATCC 824]
gi|15025049|gb|AAK80021.1|AE007709_5 TRNA nucleotidyltransferase family enzyme [Clostridium
acetobutylicum ATCC 824]
gi|325509477|gb|ADZ21113.1| TRNA nucleotidyltransferase family enzyme [Clostridium
acetobutylicum EA 2018]
Length = 393
Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 74/380 (19%), Positives = 128/380 (33%), Gaps = 31/380 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L +I + + K+ I+GGAVRDS++N+ +DID+ P +++ K
Sbjct: 15 LKDIKRACKEKKIKAYIIGGAVRDSILNVKSKDIDVCVEGDPLIIIKELKS--LKDYVYY 72
Query: 75 ISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ T I D+ R + +V K D RRDFT+NAL D
Sbjct: 73 EKFQTSTIYFNNGVSVDLIRCRKETYLKDGMLPIVEPSSIKDDIYRRDFTVNALAYDIVD 132
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+ I G D N + + ED RI R ++ YG + D + I
Sbjct: 133 ERIIDFYGGIDDINNKVIKS-IHKNSYSEDCTRIFRAIKYSIRYGFEIEDDFVFNSLIGN 191
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--SLDQLSQVIE 251
I I E I + ++ I LD + S+ Q I
Sbjct: 192 NIFNTISFERYIKELYLICGED----KWIQMLKKCCMYGIIDLDCDMLGDSIQFSEQNIN 247
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ D +L ++ + KK +L+ +KF + R+ + N++ +
Sbjct: 248 FLNMVYCSRDKILNRALVENSFLKKELLNPIRKFIVGRKELEHKLLNSKRNYDIYKVFNG 307
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
K L+ + +V + + ++G ++
Sbjct: 308 MTKYELVLF---------------------SWNKELKYKVYNYTKNILNFKTVISGKEIK 346
Query: 372 KYGIPPGKKVGNILVHCKQE 391
GK VG I +
Sbjct: 347 NLIERDGKIVGLIKEGILKR 366
>gi|261392497|emb|CAX50048.1| multifunctional CCA protein [includes: CCA-adding enzyme (tRNA
nucleotidyltransferase; tRNA
adenylyl-/cytidylyl-transferase; tRNA
CCA-pyrophosphorylase; tRNA-NT) and 2'-nucleotidase and
2',3'-cyclic phosphodiesterase and phosphatase]
[Neisseria meningitidis 8013]
Length = 417
Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 71/341 (20%), Positives = 126/341 (36%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + A ED +RILR RF A Y + + + + G
Sbjct: 114 RDLAAGILRHVPPA---FAEDPVRILRTARFAARYKFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E K L KNP I + G K + +V + E
Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|116054312|ref|YP_788757.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas aeruginosa UCBPP-PA14]
gi|254237200|ref|ZP_04930523.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa C3719]
gi|122261545|sp|Q02TH9|CCA_PSEAB RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|115589533|gb|ABJ15548.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa UCBPP-PA14]
gi|126169131|gb|EAZ54642.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa C3719]
Length = 410
Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 77/413 (18%), Positives = 136/413 (32%), Gaps = 59/413 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ V DID D ++ P + + +
Sbjct: 2 QIYKVGGAVRDRLLGRPVTDIDWVVVGASSDEMLAR------GYRPVGADF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D RRD TINA+ D+QG+VID GG
Sbjct: 54 SGEEYALARTERKSGRGYGGFTFHASPEVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 ADLEARLLRHV---SPAFAEDPLRVLRVARFAARYAGLGFRIAAETLALMRQLAESGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER W EI++ L NP I +++ G E+ +V+ + E
Sbjct: 171 ALTPERSWKEISRALMEPNPEVFIQVLHDCGALAELIPEVEALFGVPQPAAHHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ S+L+ + + + I + + F
Sbjct: 231 HVLSVLQQCARHRQPLSVRWACLLHDLGKGLTSEADWPRHIA-HEARGVPLIDAVNQRFR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ D +A+L H + +L++L +++P
Sbjct: 290 VPRDCQELARLVGEYHTHAHRALELRPNTLLELLQSFDVYRRPQRFEEFVAASEMDARGR 349
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
++ +V+ G+ G ++G L + +
Sbjct: 350 LGLEQRDYPQAAYLLGAAQAARAVSVKPLVEKGLK-GAELGEALKRARLAALK 401
>gi|120612844|ref|YP_972522.1| metal dependent phosphohydrolase [Acidovorax citrulli AAC00-1]
gi|166233836|sp|A1TUW0|CCA_ACIAC RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|120591308|gb|ABM34748.1| metal dependent phosphohydrolase [Acidovorax citrulli AAC00-1]
Length = 419
Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 53/342 (15%), Positives = 108/342 (31%), Gaps = 17/342 (4%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ V D D PD + +P + + +
Sbjct: 2 QIYMVGGAVRDRLLGRPVNDRDWVVVGATPDDLAAR------GFLPVGRDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYAD-QQGKVIDYVGG 141
+ R++ + Y V + D RRD TINA+ + + V
Sbjct: 54 TREEYALARTERKSGRGYRGFVVDTAPDVTLEQDLSRRDLTINAMAVRGEDPAAWELVDP 113
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKI 199
R+ K + ED +RILR RF A + + ++ + + +
Sbjct: 114 YGGARDLQAKLLRHVTDAFREDPVRILRVARFAARFTDFSVAPETMALMREMVDAGEAAD 173
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L ER+W EI + L P + G + ++ + E
Sbjct: 174 LVPERVWQEIARGLMEAAPSRMFEVLRGCGALAVLLPELDRLWGVPQRAEYHPEVDTGVH 233
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ +L + S+ ++ + + + ++ + +
Sbjct: 234 VMMVLDMAARLHAPLAVRFASLVHDLGKG-TTPADVLPRHIGHEQRSATLLADVCERLRV 292
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ A + + + ++++L +KP
Sbjct: 293 PVECRETADVVAREHGNIHRSAELGAAALVRLLERCDALRKP 334
>gi|145297590|ref|YP_001140431.1| multifunctional CCA protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|166233840|sp|A4SIG1|CCA_AERS4 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|142850362|gb|ABO88683.1| multifunctional CCA protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 413
Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 69/344 (20%), Positives = 125/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L D D + ++++ + + P + K
Sbjct: 2 QTYLVGGAVRDRLLGLPQGDRDHLVVGATVEQMLALGFSQVGRDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y + D LRRD TINA+ D++G++ D GG+
Sbjct: 54 TQQEYALARTERKQGRGYTGFVCHASPEVTLEQDLLRRDLTINAIAEDEEGRLHDPYGGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LRILR RF A + + + + L
Sbjct: 114 QDLEQRMLRHV---SPAFAEDPLRILRVARFAARFHAQGFVVAPETLALMREMTDAGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E+ K+L + P + G K +F ++ + E
Sbjct: 171 HLTPERVWKELEKVLLGQTPQVFFEVLRECGALKALFPELDALFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L +S + ++ F + + + I + + F
Sbjct: 231 HTLMVLAQACRLSPELAVRFAALCHDFGKG-LTPPAFWPSHHGHGQKGLPLIRDFCERFR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +A L L H + +L+V W++P
Sbjct: 290 VPNDCRDLALLVSDLHTHIHIAFELKPATLLKVFDKADAWRRPE 333
>gi|308389334|gb|ADO31654.1| putative tRNA nucleotidyltransferase [Neisseria meningitidis
alpha710]
gi|325130312|gb|EGC53079.1| multifunctional CCA protein [Neisseria meningitidis OX99.30304]
gi|325136273|gb|EGC58881.1| multifunctional CCA protein [Neisseria meningitidis M0579]
Length = 417
Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 70/341 (20%), Positives = 125/341 (36%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A Y + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFAARYKFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E K L KNP I + G K + +V + E
Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|296313655|ref|ZP_06863596.1| multifunctional CCA protein [Neisseria polysaccharea ATCC 43768]
gi|296839795|gb|EFH23733.1| multifunctional CCA protein [Neisseria polysaccharea ATCC 43768]
Length = 417
Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 69/341 (20%), Positives = 127/341 (37%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + K
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
Y + R++ T YA F D + D +RRD TINA+ D G +ID GG
Sbjct: 54 TYEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGLIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL+ ++ + +ED +RILR RF A YG + + + + G
Sbjct: 114 QDLKAGILRHV---SPAFVEDPVRILRTARFAARYGFEIDEETMKLMRKMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L NP I + G K + +V + E
Sbjct: 171 AERVWQELAKGLMENNPRRMIEVLRECGALKVLLPEVDALFGVPQRTDYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-PDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + ++ VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVEKLRSKTVIDVLKKTDAFRRPE 330
>gi|21672351|ref|NP_660418.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
gi|25008220|sp|Q8KA53|CCA_BUCAP RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|21622954|gb|AAM67629.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 412
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 69/343 (20%), Positives = 127/343 (37%), Gaps = 21/343 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRDSL+NL ++D D I K ++ + + +
Sbjct: 2 KVYLVGGAVRDSLLNLPIKDRDWVIVG---GTKEILLKKNFQQ--VGKDF--PVFLHPET 54
Query: 88 YFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ + + R + G + + + D +RRD TINA+ D+ G ID G
Sbjct: 55 HEEYSLARKERKSGRGYTGFHTEFSSDVTLEEDLIRRDLTINAIAQDENGNYIDPFQGRK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL--- 200
DL ++ + ED LRILR RF A+ D + K K
Sbjct: 115 DL---NLRLLRHVSESFTEDPLRILRTARFAANLMHLGFHIDKDTMILMCKMVKKNELLY 171
Query: 201 -SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
+ RIW+E K + NP ++ IF ++ + + I +
Sbjct: 172 LTKNRIWNETEKAFKTLNPHVYFQILHACKALNFIFPEIFFLYERRTFFSILFTNFYSIS 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
S+ + +D S +F + ++ + + + + +
Sbjct: 232 FLSIGLSKISTLTKDVSIRFSYLCQFLSEKIDFSSTKENYDDDSAKLVKKLCKRCNIPSH 291
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + +++ +Q + I+++ S I W+KP
Sbjct: 292 IEE---LAVLNTGFCVFLSSIHYQSSSNIIKMFSKIDAWRKPD 331
>gi|313111771|ref|ZP_07797564.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa 39016]
gi|310884066|gb|EFQ42660.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa 39016]
Length = 410
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 77/413 (18%), Positives = 136/413 (32%), Gaps = 59/413 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ V DID D ++ P + + +
Sbjct: 2 QIYKVGGAVRDRLLGRPVTDIDWVVVGASSDEMLAR------GYRPVGADF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D RRD TINA+ D+QG+VID GG
Sbjct: 54 SGEEYALARTERKSGRGYGGFTFHASPDVTLQEDLTRRDLTINAMAEDEQGRVIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 ADLEARLLRHV---SPAFAEDPLRVLRVARFAARYAGLGFRVAAETLALMRQLAESGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER W EI++ L NP I +++ G E+ +V+ + E
Sbjct: 171 ALTPERSWKEISRALMEPNPEVFIQVLHDCGALAELIPEVEALFGVPQPAAHHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ S+L+ + + + I + + F
Sbjct: 231 HVLSVLQQCARHRQPLSVRWACLLHDLGKGLTSEADWPRHIA-HEARGVPLIDAVNQRFR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ D +A+L H + +L++L +++P
Sbjct: 290 VPRDCQELARLVGEYHTHAHRALELRPNTLLELLQSFDVYRRPQRFEEFVAASEMDARGR 349
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
++ +V+ G+ G ++G L + +
Sbjct: 350 LGLEQRDYPQAAYLLGAAQAARAVSVKPLVEKGLK-GAELGEALKRARLAALK 401
>gi|15607098|ref|NP_214480.1| poly A polymerase [Aquifex aeolicus VF5]
gi|2984364|gb|AAC07883.1| poly A polymerase [Aquifex aeolicus VF5]
Length = 512
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 78/480 (16%), Positives = 150/480 (31%), Gaps = 93/480 (19%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ +L + IVGG VRD ++ V D+D TT P + + F+K
Sbjct: 27 VAKVLPREHY-CFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVF 85
Query: 75 ISYGTIKII--CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
G + + R K + + D RDFT NA+ +
Sbjct: 86 EKRGFLIKRPTIASVVLHLPPYRYRFDFSPLKGKDLEKALIE-DLKERDFTANAIAVNLD 144
Query: 133 G---------KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
V D GG+ DL ++ + + + D +R+LR FR +
Sbjct: 145 DVLSIGAKQTIVYDPTGGIKDLEQGLLRPVSIEN--LKRDPVRVLRGFRIAIEKN-LQLT 201
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD------ 237
D + + + + ERI E+ K+++ K I +Y G+ + I +
Sbjct: 202 EDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLRE 261
Query: 238 --------VQEISLDQLSQVIEAEQVFEWKIDS----------------------LLRFI 267
+ + L + EQV E + LL++
Sbjct: 262 VKDQGEHHIYPLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWG 321
Query: 268 VLISWQDKKSILSMA---------------------KKFSLPREIRYFLISFFNCNFNQK 306
L K ++ ++ E F+ +
Sbjct: 322 ALFHDIGKPQTFAVREGKVTFYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPF 381
Query: 307 TLSI---------PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
L + + GD L + +D +++ ++++
Sbjct: 382 FLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELES 441
Query: 358 W-------KKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ + L GD++++ GI PGK VG + + I+ + +E + + R
Sbjct: 442 FNRNEMKEEIQKPLLNGDEIMEILGIKPGKIVGILKKALLEAQIDGKVETKEEAIEFIKR 501
>gi|298368818|ref|ZP_06980136.1| multifunctional CCA protein [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282821|gb|EFI24308.1| multifunctional CCA protein [Neisseria sp. oral taxon 014 str.
F0314]
Length = 416
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 70/341 (20%), Positives = 125/341 (36%), Gaps = 19/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L+ L V+D D ++ P + +
Sbjct: 2 KTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D +ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSD-GLIDPFGGQ 112
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A YG + + + + G
Sbjct: 113 QDLAAGILRHV---SPAFAEDPVRILRTARFAARYGFEIAEETMRLMRQMVENGEADALV 169
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G K + +V + E
Sbjct: 170 AERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPEVDALFGVPQRADYHPEIDSGIHTL 229
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 230 MTLQRAADMGLSLPERYAALLHDLGKAKTP-PDILPKHHGHDLAGVEPVREVNQKLRAPR 288
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL+VL +++P
Sbjct: 289 HCAELAELVCRWHIMFHQVGQLKSKTILKVLQKTDAFRRPE 329
>gi|37527827|ref|NP_931172.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Photorhabdus luminescens subsp. laumondii TTO1]
gi|73619817|sp|Q7MAZ9|CCA_PHOLL RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|36787263|emb|CAE16344.1| tRNA nucleotidyltransferase (tRNA adenylyltransferase) (tRNA
CCA-pyrophosphorylase) (CCA-adding enzyme) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 416
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 57/345 (16%), Positives = 125/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+N V++ D + ++ + + K P + +
Sbjct: 2 RVYLVGGAVRDRLLNFPVKERDWVVVGGTSEALLSLGYQQVGKDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD T+NA+ G+++D G+
Sbjct: 54 THEEYALARTERKSGLGYTGFTCYAAPDVTLEDDLQRRDLTVNAIAQTPTGELVDPYHGV 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
+DL NR ++ + ED LR+LR RF A + ++ + +
Sbjct: 114 DDLNNRILRHV---SDAFSEDPLRVLRVARFAARFAHLGFTIASETQALMSNMAINGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L + +P + + G +F ++ + + E
Sbjct: 171 VLTPERVWKETEKALASPSPQVFFQVLRDCGALAVLFPEIDNLFGVPAPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
+L+ ++ + ++ + + + + + + +
Sbjct: 231 HTLMVLKVATELTDEVDSRFAALCHDL--GKGLTPPEQWPHHYGHGPAGVKLVDQLCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + +T +L++ + W+KP
Sbjct: 289 RVPNSARDLAKLAAQYHDLVHTVTQLRPKTLLKLFDAVDAWRKPQ 333
>gi|15595781|ref|NP_249275.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas aeruginosa PAO1]
gi|73619822|sp|Q9I5V3|CCA_PSEAE RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|9946455|gb|AAG03973.1|AE004494_9 tRNA nucleotidyl transferase [Pseudomonas aeruginosa PAO1]
Length = 410
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 76/413 (18%), Positives = 136/413 (32%), Gaps = 59/413 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ V DID D ++ P + + +
Sbjct: 2 QIYKVGGAVRDRLLGRPVTDIDWVVVGASSDEMLAR------GYRPVGADF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D RRD TINA+ D+QG+VID GG
Sbjct: 54 SGEEYALARTERKSGRGYGGFTFHASPEVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 ADLEARLLRHV---SPAFAEDPLRVLRVARFAARYAGLGFRVAAETLALMRQLAESGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER W EI++ L NP I +++ G E+ +V+ + E
Sbjct: 171 ALTPERSWKEISRALMEPNPEVFIQVLHDCGALAELIPEVEALFGVPQPAAHHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ S+L+ + + + I + + F
Sbjct: 231 HVLSVLQQCARHRQPLSVRWACLLHDLGKGLTSEADWPRHIA-HEARGVPLIDAVNQRFR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------------- 362
+ + +A+L H + +L++L +++P
Sbjct: 290 VPRECQELARLVGEYHTHAHRALELRPNTLLELLQSFDVYRRPQRFEEFVAASEMDARGR 349
Query: 363 ---------------------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
++ +V+ G+ G ++G L + +
Sbjct: 350 LGLEQRDYPQAAYLLGAAQAARAVSVKPLVEKGLK-GAELGEALKRARLAALK 401
>gi|309378616|emb|CBX22794.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 417
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 70/341 (20%), Positives = 126/341 (36%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFRPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D G +ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGLIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A YG + + + + G
Sbjct: 114 QDLAAGILRHV---SPAFAEDPVRILRTARFAARYGFEIAEETMKLMRKMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G K + +V + E
Sbjct: 171 AERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPEVDALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + + ++ + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAK-TQPDILPRHYGHDINGVEPVREVNQRLCAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 YCAELAELVCRWHIIFHQVGQLKSRTILNVLKKTDAFRRPE 330
>gi|92113052|ref|YP_572980.1| polynucleotide adenylyltransferase region [Chromohalobacter
salexigens DSM 3043]
gi|91796142|gb|ABE58281.1| Polynucleotide adenylyltransferase region [Chromohalobacter
salexigens DSM 3043]
Length = 384
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 67/379 (17%), Positives = 133/379 (35%), Gaps = 25/379 (6%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
VGGAVRD+ + V D D P+ + +P + +
Sbjct: 15 GLDVYRVGGAVRDARLGWPVTDEDWVVVGATPEALTAR------GFVPVGRDF--PVFLH 66
Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVG 140
+ + R++ Y V + D RRD TINA+ D+ G+++D
Sbjct: 67 PVTHEEYALARTERKQGHGYTGFVVHASPEVTLEEDLARRDLTINAMAEDRDGRLVDPFD 126
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKAKKG 196
G DL R ++ + +ED LR+LR RF+A Y D+ L+ +
Sbjct: 127 GRQDLDARVLRHV---SEAFVEDPLRVLRTARFWARYRELGFVIADDTKRLMRGLCDNGE 183
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
+ L +ER+W E K L +P+ ++ G ++ + + A
Sbjct: 184 IAHLVAERVWQETVKALGEPHPMAYFQALHECGALAVWMPELDASDMLARGEAAMARLPA 243
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+ R+ L+ + ++ ++ ++ +P R Q+ ++
Sbjct: 244 GGEPSQW-RWARLLEALEDEAREALCERLRVPNAWRDLARQVARTRALQRQHGDGGLEGS 302
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376
+ + A + +T + + + + P +++ G
Sbjct: 303 DVMAWFDAIDAWRRSERVAPLQRYLAMETPALAACVDEAWQAASAIQP---QALLEEGYR 359
Query: 377 PGKKVGNILVHCKQEWINS 395
GK +G+ L +Q I+
Sbjct: 360 -GKALGDALAQRRQARIDE 377
>gi|72383504|ref|YP_292859.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. NATL2A]
gi|72003354|gb|AAZ59156.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. NATL2A]
Length = 418
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 74/394 (18%), Positives = 143/394 (36%), Gaps = 38/394 (9%)
Query: 29 SCIVGGAVRDSLMNLSV-------QDIDIATTIL----PDRVMRIFSKTRYKVIPTSISY 77
IVGG VRD + D+D+ + ++ R KVI + +Y
Sbjct: 36 IAIVGGVVRDLIKKSKNQNYEIIFNDLDLIIEGETSTYIKELQKVLGAERVKVIRDNRNY 95
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVI 136
T ++I DI + R + +V K D +RRDF INA+ + + ++I
Sbjct: 96 KTSEVIINGIKVDIASARKETYPIPGENPIVELSTIKKDLIRRDFNINAMAIELKDNRLI 155
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-----------NIDSD 185
D G + + N + F+ +L+D R++R R+ A I+
Sbjct: 156 DLFSGSDAIENMKMDFLH--KSSVLDDPTRVIRASRYSAKLDFDLSNQALKQIKDTINLW 213
Query: 186 GLVASI-KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
I S R+ E+ LLE K NA+ ++ G K + +Q
Sbjct: 214 PWNWHIGDNTDLAPSALSIRLKMELELLLEDKYWKNALKNLQVCGGLKIVDSKLQNDK-- 271
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
E++F K ++ + L+ + ++ N
Sbjct: 272 -----RLIEKIFIAKKSNIEPLTAFVYESKSPIYLANRLHLNQQQKEIIEGACRLNKYL- 325
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS-DIIHWKKPLF 363
K ++ + K + + + K+ + + + + + L + +WK
Sbjct: 326 -KNITANHLYKNWSPSKWTINLEKINANESSFMLEICRNNP--LKEYLKSWLFNWKNIES 382
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397
P+ GDD++ G PG ++G + + + I+ +
Sbjct: 383 PIKGDDLIAKGWEPGPEIGIEIKRQRMKLIDENI 416
>gi|317049596|ref|YP_004117244.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pantoea sp. At-9b]
gi|316951213|gb|ADU70688.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pantoea sp. At-9b]
Length = 410
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 67/345 (19%), Positives = 123/345 (35%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD+L+ L V+D D PD ++ + + P + +
Sbjct: 2 KTFLVGGAVRDALLRLPVKDKDWVVVGTTPDAMLAQGFQQVGRDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ T Y V + D RRD TINA+ G +ID GG
Sbjct: 54 SREEYALARTERKTGNGYTGFVTWFAPDVTLEQDLQRRDLTINAIAQADNGALIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK----GLK 198
DL NRT++ + ED LR+LR RF A + N ++ L
Sbjct: 114 RDLANRTLRHV---SSAFNEDPLRVLRVARFAARFAHLNFRIAEETQALMRDMTASGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257
L+ ER+W E K L NP + + G + +F ++ + + +
Sbjct: 171 HLTPERVWKETEKALLTHNPQVYFQVLRDCGALQVLFPELDNLFGIPAPVKWHPEIDTGI 230
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ +L L D + + + + + + + +
Sbjct: 231 HSLMTLTLAAALSDELDVR--FATLFHDAGKAVTPPEKWPSHHGHGVAGVPIVAALCERL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A + + + Q ++ + + W++P
Sbjct: 289 RVPNAIRDLALIVAEFHDMVHTIERQSAQALIALFDRVDAWRRPQ 333
>gi|254490330|ref|ZP_05103519.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Methylophaga thiooxidans DMS010]
gi|224464463|gb|EEF80723.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Methylophaga thiooxydans DMS010]
Length = 408
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 63/340 (18%), Positives = 119/340 (35%), Gaps = 18/340 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+S +VGG VRD L+ L+++D D P+ ++ + P + + +
Sbjct: 2 QSYLVGGCVRDKLLGLTIKDRDWVVVGSTPEHMLTL------GFRPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D RRD TINA+ D G +ID G
Sbjct: 54 TQEEYALARTERKSGRGYRGFDVYASPDVTLEQDLARRDLTINAIAEDGDGNLIDPFNGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILS 201
DL N ++ + +ED +R+LR RF A + D + + G L
Sbjct: 114 ADLDNGILRHV---SPAFIEDPVRVLRLARFAARFDFSIADETKQLIAAMIDSGELDHLV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
SER+W E++K L+ P + G K +F +V + E +
Sbjct: 171 SERVWQELSKALQTDKPSTFFTTLREVGALKILFPEVDRLFGVPQIPKWHPEVDTGIHVM 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
++ ++ ++ ++ + +
Sbjct: 231 MVVDQAARLTNDVSVRFAALCHDLGKG-ITPADVLPSHKGHEATSVELTKALCHRLRTPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ +A + L + +LQVL I +++P
Sbjct: 290 ETTTLAMKVAEFHTDVHLLFELNADRVLQVLEGIDSFRRP 329
>gi|312881707|ref|ZP_07741484.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309370597|gb|EFP98072.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 405
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 67/343 (19%), Positives = 118/343 (34%), Gaps = 23/343 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD+L+N+ V D D P ++ +P + I K
Sbjct: 3 IYLVGGAVRDTLLNIKVSDQDWVVVGSSPQELLAA------GYLPVGKDF--PVFIHPKT 54
Query: 88 YFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + + + D RRD TINA+ G++ID G
Sbjct: 55 KQEYALARTERKISSGHTGFECFFSPSVTLEEDLSRRDLTINAMAQHLDGEIIDPFKGRR 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----KI 199
DL++R ++ + +ED LRILR RF A + + K
Sbjct: 115 DLKDRQLRHV---SDAFIEDPLRILRVARFHAKLFHLGFNIAPETLLLMKNMVKAGDLKT 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L+ ERIW E NK L NP + + G I ++ + + E
Sbjct: 172 LTPERIWQEWNKSLATPNPQIFLSTLKECGALAVILPELDALFGVPQPEQWHPEIDTGIH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ ++S + + +C+ K + +
Sbjct: 232 TLLVAEQAAMLSESPVVRFAAQVHDLGKGITPKEEWPSHKRHCHTGLKLIKELCGRVCIP 291
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
++ + + +H + T L++L+ W+KP
Sbjct: 292 NEFKELALMVCEHHSNIHRASELKASTK--LKILNKCDVWRKP 332
>gi|295698771|ref|YP_003603426.1| multifunctional CCA protein [Candidatus Riesia pediculicola USDA]
gi|295698778|ref|YP_003603433.1| multifunctional CCA protein [Candidatus Riesia pediculicola USDA]
gi|291156996|gb|ADD79441.1| multifunctional CCA protein [Candidatus Riesia pediculicola USDA]
gi|291157164|gb|ADD79609.1| multifunctional CCA protein [Candidatus Riesia pediculicola USDA]
Length = 417
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 67/347 (19%), Positives = 133/347 (38%), Gaps = 25/347 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD ++ + + D D P ++R+ + + P +
Sbjct: 2 KIYLVGGAVRDQILGMPISDRDWLVVGSSPQEMIRLGFQQVGRDFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R D + + + D RRD TINA+ + K+ID G+
Sbjct: 54 TKEEYSLARIDRKIGSGHTGFQCFSSPSVTIEEDLYRRDLTINAIAKTTKNKIIDPFFGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH----YGEKNIDSDGLVASIKAKKGLK 198
D++ R I+ + + ED +R+LR RF+A Y + ++ + ++ LK
Sbjct: 114 KDIQKRIIRHV---SNAFSEDPIRVLRTARFYAKLSEYYFTIYHKTWKIIEEMVQQEDLK 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+S ER+W E K L +P ++ G +F ++Q I + +
Sbjct: 171 TVSKERVWIETKKALSTSSPDLYFKMLFQCGALSVLFPEIQIILTKSFKKKSSLTSFIDQ 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
K L ++ S KSI + ++ N + ++ ++
Sbjct: 231 KEYIFL--VIKKSALLTKSIEVRFAALCSNFTVFFYDNHMSNSKEKKINSAVQMVRSFCD 288
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQD---TCFILQVLSDIIHWKKPL 362
KL + +A + N+ + + ++++ + W+KP
Sbjct: 289 RMCVPTKTKKLSVAIAKVHQNVQNIQNSCSKEVIKIFDQMDVWRKPK 335
>gi|225075340|ref|ZP_03718539.1| hypothetical protein NEIFLAOT_00344 [Neisseria flavescens
NRL30031/H210]
gi|224953515|gb|EEG34724.1| hypothetical protein NEIFLAOT_00344 [Neisseria flavescens
NRL30031/H210]
Length = 420
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 70/341 (20%), Positives = 124/341 (36%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L+ L V+D D ++ P + +
Sbjct: 7 KTYLVGGAVRDHLLGLPVKDRDWVVIGADAQTMLA------QGYQPVGKDF--PVFLHPD 58
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D G +ID GG
Sbjct: 59 SHEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGTIIDPFGGQ 118
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A YG + D + + G
Sbjct: 119 QDLAAGILRHV---SPAFAEDPVRILRISRFAARYGFQIADETMSLMRQMVENGEADALV 175
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G K + ++ + E
Sbjct: 176 AERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPELDALFGVPQRADYHPEIDSGIHTL 235
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+++ ++ + ++ + + + + E+ +
Sbjct: 236 MVVQRAAEMNLSLAERYAALLHDLGKAKTPADI-LPKHYGHDVNGVEPVREVNQRLRTPK 294
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + + + + IL VL +++P
Sbjct: 295 HCAELAELVCRWHIMLHQVGQFKSKTILNVLKKTDAFRRPE 335
>gi|317401373|gb|EFV82008.1| CCA-adding enzyme [Achromobacter xylosoxidans C54]
Length = 367
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 18/220 (8%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
++ IVGGAVRD+L+ L+ D D P+ + R IP + +
Sbjct: 9 GLQAYIVGGAVRDALLGLTPGDHDWVVVGATPEDMARR------GFIPVGGDF--PVFLH 60
Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVG 140
+ R++ + Y F + D RRD T+NA+ Q G+++D +G
Sbjct: 61 PVTKEEYALARTERKSGRGYKGFTFYTGTDVTLEEDLRRRDLTVNAIAQKQDGELVDPLG 120
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLK 198
G D+R R + +G+A ED +RILR RF A + + ++ + + + +
Sbjct: 121 GAADVRARVFRHVGEA---FQEDPVRILRLARFAARFADFSVAPETMALCRQMVEAGEAD 177
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
L ER+W E+++ L A P + + G + + ++
Sbjct: 178 ALVPERVWKEVSRGLMAAAPSRMLDVLRQSGALERVMPEL 217
>gi|194367187|ref|YP_002029797.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Stenotrophomonas maltophilia R551-3]
gi|226702087|sp|B4SIY9|CCA_STRM5 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|194349991|gb|ACF53114.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Stenotrophomonas maltophilia R551-3]
Length = 406
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 65/409 (15%), Positives = 126/409 (30%), Gaps = 59/409 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ D D P ++ + P + K
Sbjct: 2 KIYLVGGAVRDRLLQRPAGDRDWVVVGATPAQMEAQGYSAVGRDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKV-IDYVGG 141
+ R++ + Y V D + D RRDFTINA+ D+ +D GG
Sbjct: 54 TGEEYALARTERKSGRGYRGFVVDADPAVTLEEDLQRRDFTINAIACDEDTGTLVDPYGG 113
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL- 200
+ D+ R ++ +G A +ED LR+LR RF AH+ + +
Sbjct: 114 VRDIEQRVLRHVGPA---FVEDPLRVLRAARFMAHFAPLDFTVAPETMDLMRNVAASGEL 170
Query: 201 ---SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
ER+W E+ K L + P + +++ I +++ + E
Sbjct: 171 DALVPERVWQELRKALVSAQPSAFLRTLHDAHALGPILPELEALYGVPQRAEFHPEVDTG 230
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ + ++ D + + + + E+
Sbjct: 231 IHQEMVSDMAAKLAPGDDLVGFAALTHDLGKGLTPPEEWPRHIMHEQRGIKPLKELCARL 290
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL--------------- 362
+ + +A+ L+ + + +L++L ++P
Sbjct: 291 RVPTEHQQLAEAVCREHLNVHRIDELRDATVLELLGRCDALRRPERVARIALCCEADKRG 350
Query: 363 ----------------------FPLTGDDVVKYGIPPGKKVGNILVHCK 389
+ D+ + G +G L +
Sbjct: 351 RLGFEDSDYPQGETLKRLHQAALSVQARDLDTTHLK-GPAIGEALAKAR 398
>gi|330823197|ref|YP_004386500.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Alicycliphilus denitrificans K601]
gi|329308569|gb|AEB82984.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Alicycliphilus denitrificans K601]
Length = 415
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 56/345 (16%), Positives = 113/345 (32%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ V D D P+ ++ +P + + +
Sbjct: 2 QIYMVGGAVRDRLLGRPVNDHDWVVVGARPEDMVAR------GFVPVGRDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQG-KVIDYVGG 141
+ + R++ + Y V + D RRD TINA+ A
Sbjct: 54 THEEYALARTERKSGRGYRGFVVQASPDVTLEEDLSRRDLTINAIAASADWIGAEGLFDP 113
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKI 199
R+ + + ED +RILR RF A + + + + + + +
Sbjct: 114 YGGARDLERRVLRHVTDAFREDPVRILRVARFAARFTDFTVAPETMALMREMVQAGEANH 173
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L +ER+W E+++ L + P + G + +V+ + E
Sbjct: 174 LVAERVWQELSRGLMEEKPSRMFDVLRACGALAVVLPEVERLWGVPQRPEHHPEVDTGVH 233
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ +L +S + + + + S +K +
Sbjct: 234 LMMVLDMAARLSAP----LAVRFACLTHDLGKGTTPADVLPRHIGHEQRSGKLLKAVAER 289
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKP 361
V +L +A + N+ ++++L +KP
Sbjct: 290 LRVPVDCRELADVVAREHGNIHRSGELGAAALVRLLERCDAIRKP 334
>gi|325578139|ref|ZP_08148274.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392]
gi|325159875|gb|EGC72004.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392]
Length = 414
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 66/348 (18%), Positives = 128/348 (36%), Gaps = 24/348 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V+D D P+ ++ + K P + +
Sbjct: 2 EIYLVGGAVRDQLLGLPVKDRDWVVVGATPEMLLSQGYQQVGKDFPVF--------LNPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ G + D +RRD TINA+ D+ GK+ D G+
Sbjct: 54 SHEEYALARTERKSGKGYTGFICDFSDEITLEQDLIRRDLTINAIAQDKDGKLHDPYHGV 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
D+ R ++ I ED LR+LR RF A + + + + L
Sbjct: 114 EDIHQRILRHI---SPAFAEDPLRVLRVARFAARFHHLGFSIAEETLKLMTELTEQGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E K L +P ++ G K +F ++ + E
Sbjct: 171 HLTAERVWMETEKALNEPHPEIYFETLHQVGALKVLFPEIAALDGVPNPAKYHPEIDSFI 230
Query: 259 KIDSLLRFIVLI---SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE-IK 314
+L+ V + + +K ++ A L + + + + + +
Sbjct: 231 HTMLVLQQAVKLTENTNLNKSAVRFAAICHDLGKALTPKENWPSHHGHEKAGIKPTRLLC 290
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
K + +++L H + ++++ + W+KP
Sbjct: 291 KRLRVPNYIQELSELTCEYHTHVHKALELRPETVVKLFNTFDVWRKPQ 338
>gi|325204225|gb|ADY99678.1| multifunctional CCA protein [Neisseria meningitidis M01-240355]
Length = 417
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 66/341 (19%), Positives = 121/341 (35%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ G + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A Y + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFTARYRFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E K L KNP I + G K + +V + E
Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVGQLKSRTILNVLKKTDAFRRPE 330
>gi|307297665|ref|ZP_07577471.1| Polynucleotide adenylyltransferase region [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306916925|gb|EFN47307.1| Polynucleotide adenylyltransferase region [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 864
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 77/416 (18%), Positives = 149/416 (35%), Gaps = 26/416 (6%)
Query: 13 SDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68
++ +L L + IVGG VRD L+N D+DI + F K
Sbjct: 455 KRIVTMLRFLGAVGSELNMPTYIVGGFVRDLLLNKKNLDLDIVVEGNANLFAETFKKYFN 514
Query: 69 KVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
I + + D+ T R++ V K D RRDF+INA+
Sbjct: 515 IKIVEHREFLASSMFFNDGLRIDVATARTEYYKKPAILPEVEMSTIKKDLYRRDFSINAM 574
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEK-NIDS 184
+ + R K I +ED RILR RF +G + + +
Sbjct: 575 AIKLNQEDFGILIDFFGSRKDLSKGIIRALHPLSFIEDPTRILRAVRFEQRFGFEIEVRT 634
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ----- 239
L+ A+ L ++ +R+ E++K +E PL A+ + + G+ +++F + +
Sbjct: 635 AELLKQCAAEGYLDRVTGQRLRDELSKAIEEPLPLKALRRLASLGVMEKLFPETEFDRET 694
Query: 240 EISLDQ-LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+I L + + + ++++ D KS+ ++ LP+ L
Sbjct: 695 DIRLQRYFLRRERNALLIGEDRMFYTLLMIILRKSDSKSVEWCIARYGLPKNYLERLNDA 754
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
PE FY L ++ D L L+ +
Sbjct: 755 IATAGIIVNE-KPETPSQFYRSLKTNKPEILNFV-------NSYLDEQEDLLFLAYLKKL 806
Query: 359 KKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G+ + +YG+ G ++ ++L ++ L+++ +R+ +
Sbjct: 807 NDTKLSINGNVLKTRYGMREGPEIRDVLDELFCARLDG---LTKDKEDEFVREYLK 859
>gi|326318865|ref|YP_004236537.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|323375701|gb|ADX47970.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acidovorax avenae subsp. avenae ATCC 19860]
Length = 419
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 55/345 (15%), Positives = 108/345 (31%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ V D D PD + +P + + +
Sbjct: 2 QIYMVGGAVRDRLLGRPVNDRDWVVVGATPDDLAAR------GFLPVGRDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYAD-QQGKVIDYVGG 141
+ R++ + Y V + D RRD TINA+ + + V
Sbjct: 54 TREEYALARTERKSGRGYRGFVVDTAPDVTLEQDLSRRDLTINAMAVRGEDPAAWELVDP 113
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKI 199
R+ K + ED +RILR RF A + + ++ + + + +
Sbjct: 114 YGGARDLQAKLLRHVTDAFREDPVRILRVARFAARFTDFSVAPETMELMREMVEAGEAAD 173
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L ER+W EI + L P + G + ++ + E
Sbjct: 174 LVPERVWQEIARGLMEAAPSRMFEVLRGCGALAVLLPELYRLWGVPQRAEYHPEVDTGVH 233
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ +L + + ++ + + S + +
Sbjct: 234 VMMVLDMAARL----QAALPVRFACLVHDLGKGTTPAGVLPRHIGHEQRSATLLADVCER 289
Query: 320 YGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
V + +A + N+ ++++L +KP
Sbjct: 290 LRVPVECRETADVVAREHGNIHRSAELGAAALVRLLERCDALRKP 334
>gi|227115566|ref|ZP_03829222.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pectobacterium carotovorum subsp. brasiliensis PBR1692]
Length = 414
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 66/345 (19%), Positives = 120/345 (34%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+ L V + D P+ ++ + K P +
Sbjct: 2 KIYLVGGAVRDSLLGLPVIEKDWVVVGATPESLLAQGYQQVGKDFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D LRRD TINA+ ++G +ID G
Sbjct: 54 SRDEYALARTERKSGKGYTGFVCHAAPDVTLEQDLLRRDLTINAIARTERGDLIDPYHGH 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL NR ++ + + ED LR+LR RF A + ++ K
Sbjct: 114 RDLENRVLRHV---SNAFSEDPLRVLRVARFAARFAHLGFQIAEETMALMQKMAHEGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E K L +P + + G +F ++ + E
Sbjct: 171 YLTPERVWKETEKALGTSSPDVYFQVLRDCGALAVLFPEIDNLYGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
+ +S + ++ + + + + + + E +
Sbjct: 231 HTMMTVAMAARLSPEIDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEALCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 289 RVPNPIRDLAKLVAEYHDLVHTVQVLQPKTLLKLFDAIDVWRKPQ 333
>gi|325128353|gb|EGC51237.1| multifunctional CCA protein [Neisseria meningitidis N1568]
Length = 417
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 66/341 (19%), Positives = 121/341 (35%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ G + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A Y + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFTARYRFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E K L KNP I + G K + +V + E
Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|307265683|ref|ZP_07547236.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter wiegelii Rt8.B1]
gi|306919327|gb|EFN49548.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 467
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 88/477 (18%), Positives = 165/477 (34%), Gaps = 100/477 (20%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSI 75
++ L K IVGG +RD ++N +D D +++ ++ + K +P
Sbjct: 6 KLIRKLGKEAYNLYIVGGYIRDRILNREAKDYDFVVQEDAEKIAKLAAEKLGGTFVPFMA 65
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY-----AD 130
GT ++ + D T LR + D D RDFT+NA+
Sbjct: 66 EKGTYRVAVGDEILDFTNLRGE--------------DIYIDLAHRDFTMNAMAIKLTDYF 111
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +ID GG+ D++NR IK +G ED LR LR RF A Y + +ID
Sbjct: 112 EFEYIIDPFGGMMDIKNRKIKHVGVM--TFKEDPLRALRAVRFAATY-KFDIDEGTKAKI 168
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN-------------GGIFKEIFLD 237
+ +K ++ ERI +EI +L+ KN + M + + +
Sbjct: 169 REEAALIKQVAPERIMNEIFIILKEKNSHKYLRMMEDLKLMENIFEEVAKMKEVGKCYYH 228
Query: 238 VQEISLDQLSQVIEAEQVFE-----------------------WKIDSLLRFIVLISWQD 274
+ + L V E E + K+ +++ L
Sbjct: 229 LTNAWIHSLKTVEEYENIINSMRFPKDVYDIVSEYLDRKLSSDNKVKDIIKLGALFHDIG 288
Query: 275 KKS----------------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL--SI 310
K + +A + +P++ L + +
Sbjct: 289 KPESIYIDTENRVHFYNHETKGAEIVKKIASRMKMPKKESSLLKKLVLYHMKPLMYYVNG 348
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLA-----------LHYNNLTHQDTCFILQVLS---DII 356
K + + ++ + I L L + T +I ++L +
Sbjct: 349 GPTNKSLFRFFSELKDDSIAILLLSQADFTATRLNLGKEEEIPKFTDYITKLLKRYVEFK 408
Query: 357 HWKKPLF-PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+KPL PL ++ + + GKK+G IL ++ Q ++ + + ++
Sbjct: 409 ETEKPLLSPLD--IIINFDVKDGKKLGQILYEIRKNRFYGEIQDKEDAVEFVKERMK 463
>gi|148241263|ref|YP_001226420.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
RCC307]
gi|147849573|emb|CAK27067.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
RCC307]
Length = 410
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 66/404 (16%), Positives = 135/404 (33%), Gaps = 35/404 (8%)
Query: 24 KGEDKSCIVGGAVRDSLMNL--SVQDIDIATTI----LPDRVMRIFSKTRY------KVI 71
+VGGAVRD L+ +D+D+ +++ + + K
Sbjct: 10 AHGLHLSVVGGAVRDRLLGKSTPDKDLDLVVEGVCSWPAIQLLELINTQALPPGFQLKQS 69
Query: 72 PTSISYGTIKIIC----RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ ++GT ++ + D+++ RS+ T V D D RRDF+INA+
Sbjct: 70 QSFEAFGTAQLHLQTPAGRLLCDLSSARSERYTFPGAHPEVQPTDLVGDLRRRDFSINAI 129
Query: 128 YAD---QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
++D G DL+ +K + + +D R+LR R+ A +
Sbjct: 130 AERLPLGSSPLLDPFDGTGDLKAGQLKLLHP--LSLEDDPSRLLRGVRYGARLRLELAPE 187
Query: 185 DGLVASIK----AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG------GIFKEI 234
+ R E+ L +A+ + +
Sbjct: 188 TTAQMQSTLDDWPWPDDAPALASRSRMELELLFAESCWRSALQCLETWRGLELIQRGWKA 247
Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI--SWQDKKSILSMAKKFSLPREIR 292
L +L Q A + L ++ + + +I + +++
Sbjct: 248 LPPRSPAWLQRLGQWGHAIDPNWSAEELKLVGLLWLVPHQNNLLAIAKRLQLAHRQQQLL 307
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
+ S K + + AK + + L HQ + +L
Sbjct: 308 SRGLELQTWLQGLNPESTHAWKPSNWTNALEERGAKTEPAMVLMLLGPNHQ--PYRRPLL 365
Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
++ W+ PL+ +++ G+ G ++G+ L + E IN +
Sbjct: 366 RWLLRWRLIQSPLSAKELMNQGLSAGPELGSRLKELRVEAINQN 409
>gi|121634934|ref|YP_975179.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
meningitidis FAM18]
gi|166233867|sp|A1KU50|CCA_NEIMF RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|120866640|emb|CAM10391.1| putative tRNA nucleotidyltransferase [Neisseria meningitidis FAM18]
Length = 417
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 67/341 (19%), Positives = 122/341 (35%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + T R++ G + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYTLARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A Y + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFAARYRFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E K L KNP I + G K + +V + E
Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|328952235|ref|YP_004369569.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfobacca acetoxidans DSM 11109]
gi|328452559|gb|AEB08388.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfobacca acetoxidans DSM 11109]
Length = 503
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 77/490 (15%), Positives = 147/490 (30%), Gaps = 106/490 (21%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV-MRIFSKTRYKV 70
L + L K +VGGAVR+ L+ D+D+A V +
Sbjct: 21 APMLQVLAKLAASRGLKVYLVGGAVRELLLGRETHDLDLAVDRQALEVGQELAQTIGGSY 80
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ + +++ + + D+T R+ + D +RDFT+NA+
Sbjct: 81 VLLDEREKSARVVWQGRELDLTEFRAPDLP--------------GDLRKRDFTLNAMAIP 126
Query: 131 QQ-------GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF---------- 173
+ ++ID GG DL ++ + + L+D LR+LR FRF
Sbjct: 127 LEELLDPSTPQIIDPWGGRADLTAGRLQLLLPEN--FLDDPLRLLRAFRFAATHGFDLSP 184
Query: 174 -----FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228
YG + G + + L + + +++L + L + M
Sbjct: 185 QLRRVIQRYGPAIATAAGERQRQELFRLLSAPRAHPVLRLMDQLGFLGHLLPELEDMKGV 244
Query: 229 GIFKEIFLDVQEISLDQLSQVIEAEQVFE------------------------------- 257
LDV E SL + + E E
Sbjct: 245 AQDGYHHLDVFEHSLSTVCHLEELLAAPENYFQECASYVTTYSRQDKKAALLKLAALFHD 304
Query: 258 --------WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
++ D + L +A + +E + + L
Sbjct: 305 VGKPLTRQFREDQRRYTFYHHERLGVEIFLQVAARLRFSQEESRTVARLIELHMRPFLLL 364
Query: 310 IPEIKKLFY--------LYGDKVMIAKLKIFLALHYNNLTHQDTC--------------- 346
+ + + +A
Sbjct: 365 PDYRQGKLSQRALGRFIKAARPELAGVFLLAMADSLGGQGPAKPPDSEAALAGFCDQVYV 424
Query: 347 FILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
F+ + L + ++P LTGDD+++ + PG +L ++ + +E L
Sbjct: 425 FLKERLEPLE--QRPRL-LTGDDLIRVLRLNPGPVFSKLLTAVEEAALAGEITSREEAL- 480
Query: 406 HLLRKLIASS 415
L+R L+A +
Sbjct: 481 ELVRGLLADA 490
>gi|15602112|ref|NP_245184.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pasteurella multocida subsp. multocida str. Pm70]
gi|73619816|sp|Q9CP21|CCA_PASMU RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|12720475|gb|AAK02331.1| Cca [Pasteurella multocida subsp. multocida str. Pm70]
Length = 420
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 71/348 (20%), Positives = 118/348 (33%), Gaps = 24/348 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+NL V+D D PD ++ + K P + +
Sbjct: 2 KIYLVGGAVRDQLLNLVVKDRDWVVVGATPDDLLSQGYQQVGKDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y T + D RRD TINAL D GK+ D+ GGL
Sbjct: 54 TKEEYALARTERKAGSGYTGFICDFSPTISLEQDLSRRDLTINALAQDLDGKIYDFYGGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL+ R ++ + ED LR+LR RF A Y + + S
Sbjct: 114 TDLKQRLLRHV---SPAFAEDPLRVLRVARFAARYHALGFTIASETRELMQQLSQSGELS 170
Query: 203 ERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE-QVFE 257
+ K L +P + G + +F ++ + E F
Sbjct: 171 NLTAERVWLETEKALLEPHPEVYFQTLQEVGALQVLFPELAALQGVPNPAKYHPEIDTFV 230
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ L + ++L D ++ + + ++L
Sbjct: 231 HTMLVLQQAVLLTENTDSDKSAVRFAAICHDLGKALTPKEILPHHYGHEKAGVMPTRRLC 290
Query: 318 YLYGDKVMI---AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ I A+L H + IL++ + + W+KP
Sbjct: 291 QRFKLPHAIQDFAELCCEYHSHIHKAFELRAETILKLFNRLDVWRKPE 338
>gi|71282596|ref|YP_270865.1| tRNA nucleotidyltransferase [Colwellia psychrerythraea 34H]
gi|71148336|gb|AAZ28809.1| tRNA nucleotidyltransferase [Colwellia psychrerythraea 34H]
Length = 445
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 66/367 (17%), Positives = 129/367 (35%), Gaps = 37/367 (10%)
Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
+ E S +VGGAVRD L+N ++D D + ++++++ K P
Sbjct: 8 IKNSELNSYLVGGAVRDKLLNRPIKDEDYLVVGASIEQMIKLGYHQVGKDFPVF------ 61
Query: 81 KIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136
+ K + R++ G + D LRRD T+NA+ D GK+I
Sbjct: 62 --LHPKTKAEYALARTERKQGQGYTGFSCYFAPDVTIEQDLLRRDLTVNAMAMDHNGKII 119
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------------EKNID 183
D G NDL +R ++ + +ED LR+LR RF A Y + I
Sbjct: 120 DPYNGQNDLNDRILRHV---SDAFIEDPLRVLRVARFAARYHKYGFTIADETLTLMQEIS 176
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
+ G + + ++ + + N + NP + +E++ ++ +
Sbjct: 177 ASGELKCLTPERVWQEMQLSLADGGANSDTNSGNPEVFFEVLQQCNALEELWPELAVLWG 236
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLI-------SWQDKKSILSMAKKFSLPREIRYFLI 296
+ E +L+ VL+ + ++ A L + + +
Sbjct: 237 IPNPALWHPEICSGIHTMMVLQQAVLLTQAIPDEHSDHRTAVRFAALCHDLGKGVTSDKL 296
Query: 297 SF-FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
+ + I + +A LH + +L++ + +
Sbjct: 297 WPSHKGHETSGLPLVERICGQLKVPSHYKQLALKVCEFHLHCHKAFELKASTLLKMFNQL 356
Query: 356 IHWKKPL 362
W+KP
Sbjct: 357 DIWRKPE 363
>gi|325144615|gb|EGC66914.1| multifunctional CCA protein [Neisseria meningitidis M01-240013]
Length = 417
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 67/341 (19%), Positives = 122/341 (35%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + T R++ G + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYTLARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A Y + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFAARYRFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E K L KNP I + G K + +V + E
Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|87302005|ref|ZP_01084839.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
WH 5701]
gi|87283573|gb|EAQ75528.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
WH 5701]
Length = 440
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 62/421 (14%), Positives = 130/421 (30%), Gaps = 58/421 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQ--------DIDIATT------ILPDR--VMRIFSK---TRY 68
+ +VGGAVRD L++ V D+D+ P + R+ ++
Sbjct: 24 RVALVGGAVRDLLLHR-VHRDPWRGLPDLDLVVEQPGSEPGTPAAHRIARLLAELLGHNL 82
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ +GT ++ D+ T R + + V D RRD +INA+
Sbjct: 83 RRCQLHEEFGTAELDIDGVLLDLATARREWYAEPGANPSVSYGSLADDLARRDLSINAIA 142
Query: 129 ADQQGKVIDYVGGLND--LRNRTIKFIGDAH------------HRILEDYLRILRFFRFF 174
+ ++ + L ++ + G H + +D RI+R R+
Sbjct: 143 LLLDAEQLEQAEAAHADVLESQLLDPFGGREDLAARRLRFLHGHSLQDDPTRIVRAARYS 202
Query: 175 AH-----------YGEKNIDSDGLVASIKAKKGLKILSSE---RIWSEINKLLEAKNPLN 220
A + + G + R+ E+ LL +
Sbjct: 203 ARLGLELAPEALAQWHHTLAAWPWRRGKANPSGSPGVPPSLGSRLRKELELLLGREPWPR 262
Query: 221 AIVHMYNGGIFKEIFLDVQ-----EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK 275
A+ + + + +Q L +++ Q+ W + L +L D
Sbjct: 263 ALELLQQWQALELLDSGLQHDRTWRRRLHWAQRLLALAQLPPWPSEQWLMLALLAPLADP 322
Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335
++ + + L+ + + L L ++ + + LAL
Sbjct: 323 LALGDQLQLPHRSQLTLRGLVRLRHW-LAEPGLEPGVSPAQLSLALERGGLTPEAVILAL 381
Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
+ +L P + +++ G P G +G L + E ++
Sbjct: 382 VSGPPGVWRRGLLRWLLRWRSLAS----PTSARQLMEAGYPAGPALGEKLRELRSECLDQ 437
Query: 396 S 396
Sbjct: 438 E 438
>gi|88797582|ref|ZP_01113171.1| tRNA nucleotidyl transferase [Reinekea sp. MED297]
gi|88779754|gb|EAR10940.1| tRNA nucleotidyl transferase [Reinekea sp. MED297]
Length = 412
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 67/344 (19%), Positives = 125/344 (36%), Gaps = 23/344 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD +NL V+D D P +++ + K P + +
Sbjct: 3 IYLVGGAVRDQYLNLPVKDRDWVVVGARPQQLLDLGYKQVGADFPVF--------LHPQT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ + R++ + Y+ D + D RRD TINA+ + G++ D GL
Sbjct: 55 HEEYALARTERKSGHGYSGFNVHFDPDVTLEDDLARRDLTINAMAQAENGELFDPYQGLQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK----I 199
DL + ++ + +A ED LR+LR RF A Y +
Sbjct: 115 DLEQKKLRHVTEA---FREDPLRVLRVARFAARYDHLGFTVADETLQLMHSMVTSGELAY 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L+ ER+W+E++K L P + G K +F ++ + E +
Sbjct: 172 LTPERVWTELSKALTEATPSTFFNILRQCGALKVVFPELDRLFGVPQPMRWHPE--IDTG 229
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
I L ++ + L + L + + + + Y
Sbjct: 230 IHVLKALDTARKQTNQVATLFASLCHDLGKGLTPSAHWPSHRGHESLGADLIPGLAKKYR 289
Query: 320 YGDKVMIAKLKI-FLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +V K+ H + + I+++L D+ +++P
Sbjct: 290 WPKQVADLTEKVARYHTHCHRIDELKPSTIVKLLGDLNAFRQPE 333
>gi|301156041|emb|CBW15512.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Haemophilus parainfluenzae T3T1]
Length = 414
Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 69/347 (19%), Positives = 128/347 (36%), Gaps = 24/347 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD L+ L V+D D P+ ++ + K P + +
Sbjct: 3 IYLVGGAVRDQLLGLPVKDRDWVVVGATPEMLLAQGYQQVGKDFPVF--------LNPQN 54
Query: 88 YFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ + R++ G + D +RRD TINA+ D+ GK+ D G+
Sbjct: 55 HEEYALARTERKSGKGYTGFICDFSDDITLEQDLIRRDLTINAIAQDKDGKLHDPYHGVE 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
D+ R ++ I ED LR+LR RF A + G +A + + L
Sbjct: 115 DIHQRILRHI---SPAFAEDPLRVLRVARFAARFHHLGFSIAGETLKLMAELTEQGELAH 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L++ER+W E K L +P ++ G K +F ++ + E
Sbjct: 172 LTAERVWMETEKALNEPHPEIYFETLHQVGALKVLFPEIAALDGVPNPAKYHPEIDSFIH 231
Query: 260 IDSLLRFIVLI---SWQDKKSILSMAKKFSLPREIRYFLISF-FNCNFNQKTLSIPEIKK 315
+L+ V + + +K ++ A L + + + + + K
Sbjct: 232 TMLVLQQAVKLTENTNLNKSAVRFAAICHDLGKALTPKENWPSHHGHEKAGIKPTRSLCK 291
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A+L H + ++++ + W+KP
Sbjct: 292 RLRVPNYLQELAELTCEYHTHVHKALELRPETVVKLFNTFDVWRKPQ 338
>gi|94984658|ref|YP_604022.1| polynucleotide adenylyltransferase region [Deinococcus geothermalis
DSM 11300]
gi|94554939|gb|ABF44853.1| tRNA nucleotidyltransferase, Cca [Deinococcus geothermalis DSM
11300]
Length = 377
Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 66/414 (15%), Positives = 118/414 (28%), Gaps = 69/414 (16%)
Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
+ +W D + + +VGGAVRD+L+ + D+D+ ++
Sbjct: 18 VADRRWLTD-----LAQRAGP-GTRLALVGGAVRDALLGKTPLDLDVVVEGT--DAGKLA 69
Query: 64 SKTRYKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
+ T ++G + ++ D+ R + V D RRDF
Sbjct: 70 AATGL-PFLVHPAFGNATVTLPDGRHVDLVRARRETYPVPGGNPVPAPGTLADDLQRRDF 128
Query: 123 TINALYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
+NAL ++D V GL+DLR R ++ + + ED R++R R
Sbjct: 129 GLNALALPIGPDGPGPLLDEVNGLDDLRKRALRPLHP--RSLYEDASRLVRGARLAGRLD 186
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
++ E+ LL P A + G +
Sbjct: 187 LSAHPELLRQVPDALEQADTTPRLRA---ELRLLLHEPRPGRAARMLEAWGAASLLPPGT 243
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+L + + + +L + D ++ +
Sbjct: 244 A----TRLEALDAQQDAGQPVPAQAYAAALLSAAPDPTALAA------------------ 281
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
G L + +L
Sbjct: 282 --------------------RLGLGEKPGGLLARALSDTPTSPGSAEAVLRSLLR----- 316
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED---LHHLLR 409
PL+G DV+ G+PPG VG L H +E+ L L+
Sbjct: 317 PDAYPPLSGRDVLALGVPPGPAVGQALAHLATLRRAGQVHSPEEERAALRAYLQ 370
>gi|294670961|ref|ZP_06735817.1| hypothetical protein NEIELOOT_02667 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307448|gb|EFE48691.1| hypothetical protein NEIELOOT_02667 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 408
Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 65/341 (19%), Positives = 120/341 (35%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRDSL+ L V+D D + ++ +P + +
Sbjct: 2 QIYLVGGAVRDSLLGLPVRDRDWVVVGADAETMLA------QGFLPVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D +RRD TINA+ G +ID GG
Sbjct: 54 SREEYALARTERKTAKGYTGFAFHADKDVTLEQDLMRRDLTINAIAQSSDGLIIDPFGGE 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DLR + ++ + ED +RILR RF A YG + + + + G
Sbjct: 114 ADLRRKILRHV---SPAFAEDPVRILRTARFAARYGFEVAEETMCLMRQMVEAGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L K P + G K + ++ + E
Sbjct: 171 AERVWQELAKGLMEKQPRRMFEILRECGALKVLLPEIDALFGIPQPAAHHPEIDCGLHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+L+ ++ ++ L+ + + + + + + +
Sbjct: 231 MVLQRAAGMNLGLPARYAALLHDLGKA-LTPPDLLPKHHGHDLAGITPVQTVNRRWRVPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + +N T L VL +++P
Sbjct: 290 QCAELAELVCRWHIVLHNAFTLKTSTALNVLQKTDAFRRPE 330
>gi|254673906|emb|CBA09690.1| tRNA nucleotidyltransferase [Neisseria meningitidis alpha275]
Length = 417
Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 66/341 (19%), Positives = 121/341 (35%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ G + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A Y + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFAARYRFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E K L KNP I + G K + +V + E
Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|94499961|ref|ZP_01306496.1| tRNA nucleotidyltransferase [Oceanobacter sp. RED65]
gi|94427819|gb|EAT12794.1| tRNA nucleotidyltransferase [Oceanobacter sp. RED65]
Length = 419
Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 72/424 (16%), Positives = 143/424 (33%), Gaps = 59/424 (13%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKII 83
K+ +VGGAVRD L+N++++D D P+ + K P +
Sbjct: 3 FNMKTYLVGGAVRDQLLNIAIKDRDWVVVGSTPEDMQGKGYKQVGADFPVF--------L 54
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYV 139
K + R++ + Y + D +RRD TINA+ D+ G++ID
Sbjct: 55 HPKTQEEYALARTERKSGKGYQGFTVDFTSDVTLEEDLIRRDLTINAMAQDESGEIIDPF 114
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKK 195
G D++++ ++ + ED LR+LR RF A + + +
Sbjct: 115 NGRLDIKDKVLRHV---SPAFSEDPLRVLRVARFAARFHHLGFTVADETLSLMTELSDSG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------------SL 243
L L++ER+W E + L K+P + + K F ++ ++
Sbjct: 172 ELATLTAERVWVETQRALSEKSPWIYFQVLKDCHALKACFKELDDLFGVPQPEKHHPEID 231
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR----------- 292
L ++ EQ D+ +RF L+ K + E +
Sbjct: 232 TGLHSLMVLEQASLLSTDTEVRFAALVHDLGKGKTPKEEWPRHIGHEKKGLKPIKALCDR 291
Query: 293 --------------YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
+ + F K ++ ++ K +L +
Sbjct: 292 LRVPNKHKELALKASEFHTHVHRAFELKPSTVFKVFKQTDALRKPERFEQLLLVCKADSR 351
Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398
T + Q + + + + + + + G+ G ++G + E I +
Sbjct: 352 GRTSFENVPYKQ-MDYLDYLLRCVQQVDTKTIASSGLK-GPEIGAAIEAAYVEAIQQGQK 409
Query: 399 LSQE 402
+
Sbjct: 410 NKSD 413
>gi|119773971|ref|YP_926711.1| polynucleotide adenylyltransferase region [Shewanella amazonensis
SB2B]
gi|119766471|gb|ABL99041.1| metal dependent phosphohydrolase [Shewanella amazonensis SB2B]
Length = 427
Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 62/348 (17%), Positives = 122/348 (35%), Gaps = 22/348 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRDSL+ L V+D D + + ++ + K P + K
Sbjct: 6 KTYLVGGAVRDSLLGLDVKDRDYMVVGATVEEMLAAGYRQVGKDFPVF--------LHPK 57
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D RRD TINA+ + G + D GG+
Sbjct: 58 TQEEYALARTERKSGTGYGGFVCHASPDVTLEEDLKRRDLTINAIAMAEDGSLHDPWGGV 117
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL R ++ + +A +ED LR+LR RF A + + ++ +
Sbjct: 118 ADLEARLLRHVCEA---FVEDPLRVLRVARFAARFAPQGFTVAPDTLALMRQLTESGELL 174
Query: 203 ERIWSEINK----LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ + +L +P + G + +F ++ + + E
Sbjct: 175 YLTAERVWQELEKVLGCDSPQVFFDVLNQCGALEVLFPEIHALFGVPQPEQWHPEIDTGV 234
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L ++ + ++ + + + + I + F
Sbjct: 235 HTMMVLEQAAKLTPNKQVRFAALVHDLGKGVTPKALW-PKHHGHGQKGLPLIKALCDRFR 293
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-LFPL 365
+ D +A + +N IL++ + W+KP PL
Sbjct: 294 VPSDYKELALWVSDEHQNIHNAFELRADTILRLFDKLDLWRKPERLPL 341
>gi|242238281|ref|YP_002986462.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dickeya dadantii Ech703]
gi|242130338|gb|ACS84640.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dickeya dadantii Ech703]
Length = 412
Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 64/343 (18%), Positives = 118/343 (34%), Gaps = 21/343 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD+L+ V + D P+ +++ + + P + +
Sbjct: 3 IYLVGGAVRDNLLERPVTERDWVVVGATPEAMLQQGYQQVGRDFPVF--------LHPET 54
Query: 88 YFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y + + D LRRD TINA+ D G++ID GG
Sbjct: 55 KEEYALARTERKSGHGYTGFVCQATPDITLEEDLLRRDLTINAIAQDDAGRLIDPYGGQQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----KI 199
DL++R ++ + ED LR+LR RF A Y ++
Sbjct: 115 DLQDRILRHV---SDAFSEDPLRVLRVARFAARYAHLGFHIAEETLTLMQMMTRAGDLDY 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L+ ER+W E K L P + + G +F ++ + E
Sbjct: 172 LTPERVWKETEKALGTDAPQVYFQVLRDCGALAVLFPEIDRLYGVPAPARWHPEIDTGIH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ L +S D ++ L + + + + + +
Sbjct: 232 VMMSLSMAARLS-PDIDIRFAVLCHDVGKGLTPQALWPRHHGHGPAGVPLVQALCQRLRV 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A L + + +L++ I W+KP
Sbjct: 291 PNAPRDLACLVTEYHDLVHTVQILRPQTLLKLFDAIDVWRKPQ 333
>gi|261364998|ref|ZP_05977881.1| multifunctional CCA protein [Neisseria mucosa ATCC 25996]
gi|288566583|gb|EFC88143.1| multifunctional CCA protein [Neisseria mucosa ATCC 25996]
Length = 418
Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 70/341 (20%), Positives = 123/341 (36%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L+ L V+D D ++ P + +
Sbjct: 9 KTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPD 60
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D +ID GG
Sbjct: 61 THEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMARDSDNLIIDPFGGQ 120
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A YG + + + + G
Sbjct: 121 QDLVAGILRHV---SPAFAEDPVRILRTARFAARYGFEIAEETIKLMRQMVENGEADALV 177
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G K + +V + E
Sbjct: 178 AERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPEVDALFGVPQRADYHPEIDSGIHTL 237
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + +I +
Sbjct: 238 MTLQRTADMGLSLPERYAALLHDLGKAKTP-PDILPKHHGHDLAGVEPVRKINQRLRAPK 296
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + IL VL +++P
Sbjct: 297 HCAELAELVCRWHIMFHQVEQFKNKTILTVLKKTDAFRRPE 337
>gi|50122509|ref|YP_051676.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pectobacterium atrosepticum SCRI1043]
gi|73619772|sp|Q6D160|CCA_ERWCT RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|49613035|emb|CAG76486.1| tRNA nucleotidyltransferase [Pectobacterium atrosepticum SCRI1043]
Length = 414
Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 65/345 (18%), Positives = 118/345 (34%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+ L V + D P+ ++ + K P +
Sbjct: 2 KIYLVGGAVRDSLLGLPVTEKDWVVVGATPEHLLAQGYQQVGKDFPVF--------LHPI 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D LRRD TINA+ ++G +ID G
Sbjct: 54 SRDEYALARTERKSGKGYTGFVCHAEPDVTLEQDLLRRDLTINAIARTERGDLIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL NR ++ + ED LR+LR RF A + ++ K +
Sbjct: 114 RDLDNRVLRHV---SDAFSEDPLRVLRVARFAARFAHLGFQIAEETMALMQKMAHEGELA 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L +P + + G +F ++ + E
Sbjct: 171 FLTPERVWKETEKALGTSSPDVYFQVLRDCGALAVLFPEIDNLYGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
+ +S ++ + + + + + + E +
Sbjct: 231 HTMMTVAMAARLSPDIDVRFATLCHDL--GKGLTPPELWPRHLGHGPAGVKLVEALCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 289 RVPNPIRDLAKLVAEYHDLVHTVQVLQPKTLLKLFDAIDVWRKPQ 333
>gi|325132575|gb|EGC55268.1| multifunctional CCA protein [Neisseria meningitidis M6190]
gi|325138348|gb|EGC60917.1| multifunctional CCA protein [Neisseria meningitidis ES14902]
gi|325142488|gb|EGC64892.1| multifunctional CCA protein [Neisseria meningitidis 961-5945]
gi|325198375|gb|ADY93831.1| multifunctional CCA protein [Neisseria meningitidis G2136]
Length = 417
Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 66/341 (19%), Positives = 121/341 (35%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ G + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A Y + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFAARYRFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E K L KNP I + G K + +V + E
Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|304396860|ref|ZP_07378740.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pantoea sp. aB]
gi|304355656|gb|EFM20023.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pantoea sp. aB]
Length = 421
Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 120/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD+L+NL V D D T P+ ++ + + P +
Sbjct: 13 KTFLVGGAVRDALLNLPVTDKDWVVTGSTPEAMLEQGYQQVGRDFPVF--------LHPV 64
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y V + D RRD TINA+ D+ G+++D G
Sbjct: 65 SREEYALARTERKNGKGYTGFVTWSAPDVTLEQDLQRRDLTINAIAQDENGELVDPYNGQ 124
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
D+ ++ + ED LR+LR RF A + N + +
Sbjct: 125 RDI---ALRLLRHVSEAFSEDPLRVLRVARFAARFAHLNFRIAPETQQLMQQMAESGELS 181
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E K L A+NP + + G + +F ++ + E
Sbjct: 182 NLTAERVWKETEKALSARNPQVYFQVLRDCGALQVLFPELDNLFGIPAPIKWHPEIDTGV 241
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + + L + + + + +
Sbjct: 242 HTLMTLAMAAALSSEIDVR-FATLFHDVGKALTPPELWPSHHGHGLAGVPLVEALCQRLR 300
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A + + + Q ++ + I W+KP
Sbjct: 301 VPNAIRDLALIVTEFHDIVHTIERQSPASLVALFDRIDAWRKPQ 344
>gi|254670092|emb|CBA05004.1| tRNA nucleotidyltransferase [Neisseria meningitidis alpha153]
gi|316985100|gb|EFV64053.1| poly A polymerase head domain protein [Neisseria meningitidis
H44/76]
gi|325200128|gb|ADY95583.1| multifunctional CCA protein [Neisseria meningitidis H44/76]
Length = 417
Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 66/341 (19%), Positives = 121/341 (35%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ G + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A Y + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFAARYKFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E K L KNP I + G K + +V + E
Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|15677113|ref|NP_274265.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
meningitidis MC58]
gi|73619811|sp|Q9JZ88|CCA_NEIMB RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|7226481|gb|AAF41622.1| tRNA nucleotidyltransferase [Neisseria meningitidis MC58]
gi|325140529|gb|EGC63050.1| multifunctional CCA protein [Neisseria meningitidis CU385]
Length = 417
Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 66/341 (19%), Positives = 121/341 (35%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ G + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A Y + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFAARYKFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E K L KNP I + G K + +V + E
Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|312170980|emb|CBX79239.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Erwinia amylovora
ATCC BAA-2158]
Length = 408
Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 71/388 (18%), Positives = 138/388 (35%), Gaps = 43/388 (11%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L++L ++D D P +++++ + + P +
Sbjct: 2 KTYLVGGAVRDGLLDLPLKDKDWVVVGASPRQMLQLGYQQIGRDFPVF--------LHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y V + D RRD TINA+ D G D GG
Sbjct: 54 SHEEYALARTERKSGQGYTGFVCYSAPDVTLEQDLARRDLTINAIARDTDGNYYDPYGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
+DL+ R ++ + ED LR+LR RF A + + N + ++ L+
Sbjct: 114 SDLQQRLLRHV---SAAFNEDPLRVLRVARFAARFADLNFRIADETLALMQTMTDSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E L+ NP + + G +F ++ ++ E
Sbjct: 171 HLTAERVWKETESALQTPNPQVFFQVLRDCGALAVLFPELDKLYGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + + + + + + + +
Sbjct: 231 HTLMTLAMSARLS-PEIEIRFAALFHDVGKALTPPEKWPSHHGHGPAGVPLVAALCERLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGD-DVVKY 373
+ +A L + + HQ ++ + + W+KP LT + D
Sbjct: 290 VPNALRDLALLVTEFHDLVHTIQHQPPVQLVALFDRVDAWRKPHRVQQLALTSEAD--AR 347
Query: 374 G--------IPPGKKVGNILVHCKQEWI 393
G P G + ++ W+
Sbjct: 348 GRTGFESNPYPQG-------DYLREAWL 368
>gi|227328984|ref|ZP_03833008.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pectobacterium carotovorum subsp. carotovorum WPP14]
Length = 414
Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 66/345 (19%), Positives = 119/345 (34%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+ L V + D P+ ++ + K P +
Sbjct: 2 KIYLVGGAVRDSLLGLPVTEKDWVVVGATPENLLTQGYQQVGKDFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D LRRD TINA+ ++G +ID G
Sbjct: 54 SRDEYALARTERKSGKGYTGFVCHAAPDVTLEQDLLRRDLTINAIARTERGDLIDPYHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL NR ++ + ED LR+LR RF A + ++ K
Sbjct: 114 RDLENRLLRHV---SDAFSEDPLRVLRVARFAARFAHLGFQIAEETMALMQKMAHEGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E K L +P + + G +F ++ + E
Sbjct: 171 YLTPERVWKETEKALGTSSPDVYFQVLRDCGALAVLFPEIDNLYGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLF 317
+ +S + ++ + + + + + + E +
Sbjct: 231 HTMMTVAMAARLSPEIDVRFATLCHDL--GKGLTPPELWPRHHGHGPAGVKLVEALCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + + +L++ I W+KP
Sbjct: 289 RVPNPIRDLAKLVAEYHDLVHTVQVLQPKTLLKLFDAIDVWRKPQ 333
>gi|53802666|ref|YP_112563.1| tRNA nucleotidyltransferase [Methylococcus capsulatus str. Bath]
gi|73619800|sp|Q60CQ4|CCA_METCA RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|53756427|gb|AAU90718.1| tRNA nucleotidyltransferase [Methylococcus capsulatus str. Bath]
Length = 425
Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 69/407 (16%), Positives = 127/407 (31%), Gaps = 58/407 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L+ L V++ D P+ ++ P + + +
Sbjct: 2 KAFLVGGAVRDRLLGLPVRERDWVVVGESPETMIAR------GFRPVGRDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y V + D RRD TINA+ G+++D GG
Sbjct: 54 THEEYALARTERKTAPGYRGFVVHAAPDVTLEQDLERRDLTINAMAETPDGRLVDPFGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH----YGEKNIDSDGLVASIKAKKGLK 198
DL R ++ + ED +RILR RF A ++ + + +
Sbjct: 114 RDLEARLLRHV---SSAFAEDPVRILRVARFTARLTPLGFRVAPETLVEMRRMVEAGEVD 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL------------ 246
L ER+W+E K L P + + G K +F +++ +
Sbjct: 171 ALVPERVWAEFAKALAEPAPSAFFRTLRDCGALKRLFPEIERLFGVPQPPRHHPEIDTGV 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE----------IRYFLI 296
++ +Q D RF L K E F
Sbjct: 231 HTLMVLDQAARLTADPSARFAALTHDLGKALTPPELWPSHRGHERLGLGALNTLCDRFRA 290
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ------ 350
+K + + ++ L AL ++ T + +
Sbjct: 291 PNAFRRLAEKVMRYHGLCHRAAELRTSTLVDLLDRLGALKRHDDTLEPFLLACEADARGR 350
Query: 351 ---------VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388
+ ++ + +++ + G G L
Sbjct: 351 AGFEERPYPQADWLREAQRAAVSVDSRPLIEQRLQ-GPAFGRALRQL 396
>gi|238755491|ref|ZP_04616831.1| Phosphatase [Yersinia ruckeri ATCC 29473]
gi|238706332|gb|EEP98709.1| Phosphatase [Yersinia ruckeri ATCC 29473]
Length = 415
Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 66/343 (19%), Positives = 123/343 (35%), Gaps = 21/343 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD+L+NL V + D P++++ + K P +
Sbjct: 3 IYLVGGAVRDNLLNLPVTERDWVVVGATPEQLLSQGYQQVGKDFPVF--------LHPVS 54
Query: 88 YFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y + D LRRD TINA+ G++ D G
Sbjct: 55 REEYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIAQHSDGELFDPYHGQQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKAKKGLKI 199
DL NR ++ + ED LR+LR RF A + ++ L+ + L
Sbjct: 115 DLENRILRHV---SAAFAEDPLRVLRVARFAARFANLGFTIAPETQALMRQMADNGELSA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L+ ER+W E K L +++P + + G +F ++ + + E
Sbjct: 172 LTPERVWKETEKALLSQSPQTYFQVLRDCGALAVLFPEIDALFGVPAPEKWHPEIDTGIH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
L +S + ++ + F + + + + + +
Sbjct: 232 TLMTLTIAAQLSSEVAIRFAALCHDLGKGLTPKEFW-PRHHGHGPAGIKLVERLCQRLRV 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+AKL + + +L++ I W+KP
Sbjct: 291 PNPVRDLAKLVAEYHDLIHTIDRLRPETLLKLFDAIDVWRKPE 333
>gi|134298036|ref|YP_001111532.1| metal dependent phosphohydrolase [Desulfotomaculum reducens MI-1]
gi|134050736|gb|ABO48707.1| metal dependent phosphohydrolase [Desulfotomaculum reducens MI-1]
Length = 472
Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 75/481 (15%), Positives = 142/481 (29%), Gaps = 106/481 (22%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIK 81
+ ++ +VGGAVRD +N D+D T + + ++ + ++ ++
Sbjct: 9 QQLSIQTYLVGGAVRDLFLNKIPVDLDFCVTAKVFALAQTLTQQYQGSLVTLDDQREMLR 68
Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141
++ + D + LR ++ + D RDFT+NA+ +
Sbjct: 69 VVTNSWHLDFSPLRDEI--------------LEKDLFARDFTLNAMALPVSMGI-----N 109
Query: 142 LNDLRNRTIKFIG------------DAHHRILEDYLRILRFFRFFA-------------- 175
+ +N+ G + I +D LR LR RF A
Sbjct: 110 KYNWQNQIQDPTGGKGDLKKGLLRAASSSSIQQDPLRSLRGIRFAATYNLAIIPETMVLL 169
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKN--PLNAIVHMYNGGIFKE 233
G + I+ L L W L + M
Sbjct: 170 RQGTRRIEQIAGERLWHELAILFKLPITSFWINYMDQELHFWQYLLPGQLRMAQTKQNHY 229
Query: 234 IFLDVQEISLDQLSQVIEAEQVFEW--------------------KIDSLLRFIVLISWQ 273
+V L + Q +L+ LI
Sbjct: 230 HVENVWRHCLRTYECLEVILQELSTIPSEGEPLLIHFNQHLSGGRSRCQVLKLAALIHDV 289
Query: 274 DKKS----------------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
K ++A + L R R++L++ + L
Sbjct: 290 GKPDTAVIREDGRISFHGHAEAGVPYAEALATRLKLSRLERHYLVNLVLLHMLPLNLYNS 349
Query: 312 EIKKLFYLYG-----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI----------- 355
+ +Y + ++ L + LA LT + L+
Sbjct: 350 GDRSDLSVYRLFRSLENYILDVLILSLADVTATLTAGERISELEAYRTFILNLLGKFIVE 409
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
P+ L+G +++ GIP G +VG IL +E + S ++ L + KL ++
Sbjct: 410 KDRFHPVPYLSGAALLELGIPEGPEVGLILEKLCEEQVTGSITDTKTALLWVKTKLAGNN 469
Query: 416 Q 416
+
Sbjct: 470 K 470
>gi|85058236|ref|YP_453938.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Sodalis
glossinidius str. 'morsitans']
gi|123520219|sp|Q2NWE2|CCA_SODGM RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|84778756|dbj|BAE73533.1| tRNA nucleotidyl transferase [Sodalis glossinidius str.
'morsitans']
Length = 415
Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 71/410 (17%), Positives = 133/410 (32%), Gaps = 57/410 (13%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+ L V++ D P ++ + K P +
Sbjct: 4 YLVGGAVRDGLLQLPVKERDWVVVGATPQEMLAQGYQHVGKDFPVF--------LHPDSR 55
Query: 89 FDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ + Y + + D RRD TINA+ D +G +ID G D
Sbjct: 56 EEYALARTERKSGQGYTGFICYASPEVTLEEDLRRRDLTINAIARDDEGNLIDPYQGQQD 115
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSS 202
+R R ++ + ED LR+LR RF A + I + + + L +L+
Sbjct: 116 IRQRWLRHV---SDAFGEDPLRVLRVARFAARFAHLNFRIAPETMALMQQMTDELPLLAP 172
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
ER+W E + L +NP + + G K +F +V + E
Sbjct: 173 ERVWKETERTLATRNPQVYFQVLRDCGALKALFPEVDALFGVPAPAKWHPEIDTGIHTLM 232
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
+ + D + L + + + + + +
Sbjct: 233 TVSMAARL-TDDIAVRFATLCHDVGKALTPRELWPSHHGHGPAGVKVVEALCQRLKVPNP 291
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP--------------------- 361
+A + + ++++ S I W++P
Sbjct: 292 LRDLATIVARYHDLLHGAQSLTPKTLIKLFSAIDVWRRPARLEQMILASEADARGRTGFE 351
Query: 362 ----------------LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
++ DV+ G G ++G L +Q+ + S
Sbjct: 352 NHAYPQGDFLRDAFRVASSVSARDVMAAGF-SGAQIGEELNRRRQQALAS 400
>gi|124025095|ref|YP_001014211.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. NATL1A]
gi|123960163|gb|ABM74946.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. NATL1A]
Length = 418
Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 75/394 (19%), Positives = 142/394 (36%), Gaps = 38/394 (9%)
Query: 29 SCIVGGAVRDSLMNLSV-------QDIDIATTIL----PDRVMRIFSKTRYKVIPTSISY 77
IVGG VRD + D+D+ + ++ R KVI + +Y
Sbjct: 36 IAIVGGVVRDLIKKSKNQDYEIIFNDLDLIIEGETSTYIKELQKVLGAERVKVIRDNRNY 95
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVI 136
T ++I DI + R + +V K D +RRDF INA+ + + ++I
Sbjct: 96 KTSEVIINGIKVDIASARKETYPIPGENPIVELSTIKKDLIRRDFNINAMAIELKDNRLI 155
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-----------NIDSD 185
D G + + N + F+ +L+D R++R R+ A I+
Sbjct: 156 DLFSGSDAIENMKMDFLH--KSSVLDDPTRVIRASRYSAKLDFDLSNQALKQIKDTINLW 213
Query: 186 GLVASI-KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
I S R+ E+ LLE K NA+ ++ G K + +Q
Sbjct: 214 PWNWHIGDNTDLAPSALSIRLKMELELLLEDKYWKNALKNLQVCGGLKIVDSKLQNDQ-- 271
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
E++F K ++ + L+ + ++ N
Sbjct: 272 -----RLIEKIFIAKKSNIEPLTAFVYESKSPIYLAKRLHLNQQQKEIIEGACRLNKYL- 325
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS-DIIHWKKPLF 363
K L+ + K + + K+ + + + + + L + +WK
Sbjct: 326 -KNLTANHLYKNWSPSKWTTNLEKINANESSFMLEICRNNP--LKEYLKSWLFNWKNIES 382
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397
P+ GDD++ G PG ++G + + + I+ +
Sbjct: 383 PIKGDDLIAKGWEPGPEIGIEIKRQRMKLIDENI 416
>gi|304387497|ref|ZP_07369686.1| multifunctional CCA protein [Neisseria meningitidis ATCC 13091]
gi|304338384|gb|EFM04505.1| multifunctional CCA protein [Neisseria meningitidis ATCC 13091]
Length = 417
Score = 99.5 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 66/341 (19%), Positives = 121/341 (35%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ G + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYVGFSFHTDKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A Y + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFAARYRFEIAEETIKLMRQMVANGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G K + +V + E
Sbjct: 171 AERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|292486910|ref|YP_003529780.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Erwinia amylovora
CFBP1430]
gi|292900695|ref|YP_003540064.1| multifunctional CCA-adding tRNA
nucleotidyltransferase/2'-nucleotidase/2',3'-cyclic
phosphodiesterase/phosphatase [Erwinia amylovora ATCC
49946]
gi|291200543|emb|CBJ47672.1| multifunctional Cca protein [includes: CCA-adding enzyme (tRNA
nucleotidyltransferase); 2'-nucleotidase; 2',3'-cyclic
phosphodiesterase; phosphatase] [Erwinia amylovora ATCC
49946]
gi|291552327|emb|CBA19372.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Erwinia amylovora
CFBP1430]
Length = 408
Score = 99.5 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 64/343 (18%), Positives = 126/343 (36%), Gaps = 21/343 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L++L ++D D P +++++ + + P +
Sbjct: 2 KTYLVGGAVRDGLLDLPLKDKDWVVVGASPRQMLQLGYQQIGRDFPVF--------LHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y V + D RRD TINA+ D G D GG
Sbjct: 54 SHEEYALARTERKSGQGYTGFVCYSAPDVTLEQDLARRDLTINAIARDTDGNYYDPYGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
+DL+ R ++ + ED LR+LR RF A + + N + ++ L+
Sbjct: 114 SDLQQRLLRHV---SAAFNEDPLRVLRVARFAARFADLNFRIADETLALMQTMTDSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E L+ NP + + G +F ++ ++ E
Sbjct: 171 HLTAERVWKETESALQTPNPQVFFQVLRDCGALAVLFPELDKLYGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S + + + + + + + +
Sbjct: 231 HTLMTLAMAARLS-PEIEIRFAALFHDVGKALTPPEKWPSHHGHGPAGVPLVAALCERLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ +A L + + HQ ++ + + W+KP
Sbjct: 290 VPNALRDLALLVTEFHDLVHTIQHQPPVQLVALFDRVDAWRKP 332
>gi|104779694|ref|YP_606192.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas entomophila L48]
gi|166233870|sp|Q1IG27|CCA_PSEE4 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|95108681|emb|CAK13375.1| Multifunctional CCA protein [Includes: CCA-adding enzyme (tRNA
nucleotidyltransferase) (tRNA
adenylyl-/cytidylyl-transferase) (tRNA
CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase;
2',3'-cyclic phosphodiesterase; Phosphatase]
[Pseudomonas entomophila L48]
Length = 375
Score = 99.5 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 75/379 (19%), Positives = 134/379 (35%), Gaps = 32/379 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ V D+D +++ ++ P + + K
Sbjct: 2 QIYKVGGAVRDRLLGRPVSDVDWLVVGATVEQM----QAQGFR--PVGADF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D +RRD TINA+ D+ G + D G
Sbjct: 54 TGEEYALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEHGDLHDPYHGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL R ++ + ED LR+LR RF A Y + +
Sbjct: 114 TDLDQRILRHV---SLAFAEDPLRVLRVARFAARYAPMGFRVADETLELMRQISASGELL 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF-- 256
++ER W EI + L P I + G KE+ +V + ++SQ A V
Sbjct: 171 ALTAERSWKEIERALMEDQPQVFIEVLRACGALKELMPEVDALFHGEVSQGSHALDVLQQ 230
Query: 257 --EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ +R+ L+ K I ++ ++F PRE + I + +
Sbjct: 231 AAAQQQPLAVRWACLLLALGGKQIKTVNQRFKAPRECQELAILVGEFHEQGHRAMELAPE 290
Query: 315 KLFYLYGDKVMIAK----LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370
L L + + + A + L + L + + +
Sbjct: 291 MLLDLLQKFDVYRRPQRFEEFIEACRMDALLGGRDYPQSEYLRGAAATAR---AVDVKPL 347
Query: 371 VKYGIPPGKKVGNILVHCK 389
++ G+ G+ +G L +
Sbjct: 348 MESGLT-GQALGGALKAAR 365
>gi|218889325|ref|YP_002438189.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas aeruginosa LESB58]
gi|226702075|sp|B7V4H0|CCA_PSEA8 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|218769548|emb|CAW25308.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa LESB58]
Length = 410
Score = 99.5 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 72/344 (20%), Positives = 122/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ V DID D ++ P + + +
Sbjct: 2 QIYKVGGAVRDRLLGRPVTDIDWVVVGASSDEMLAR------GYRPVGADF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D RRD TINA+ D+QG+VID GG
Sbjct: 54 SGEEYALARTERKSGRGYGGFTFHASPEVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + L+
Sbjct: 114 ADLEARLLRHV---SPAFAEDPLRVLRVARFAARYAGLGFRVAAETLALMRQLAESGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER W EI++ L NP I +++ G E+ +V+ + E
Sbjct: 171 ALTPERSWKEISRALMEPNPEVFIQVLHDCGALAELIPEVEALFGVPQPAAHHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ S+L+ + + + I + + F
Sbjct: 231 HVLSVLQQCARHRQPLSVRWACLLHDLGKGLTSEADWPRHIA-HETRGVPLIDAVNQRFR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +A+L H + +L++L +++P
Sbjct: 290 VPRDCQELARLVGEYHTHAHRALELRPNTLLELLQSFDVYRRPQ 333
>gi|226946697|ref|YP_002801770.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Azotobacter vinelandii DJ]
gi|259585840|sp|C1DIX6|CCA_AZOVD RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226721624|gb|ACO80795.1| t-RNA nucleotidyltransferase/poly(A) polymerase [Azotobacter
vinelandii DJ]
Length = 418
Score = 99.5 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 62/344 (18%), Positives = 113/344 (32%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ V ++D + ++ + P + + +
Sbjct: 2 RIYKVGGAVRDRLLGRPVSEVDWVVVGASAEELLAL------GYRPVGADF--PVFLHPR 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D LRRD TINA+ D+QG++ID G
Sbjct: 54 TGEEYALARTERKSGRGYGGFTFHASPEVTLEEDLLRRDLTINAMAEDEQGRLIDPCHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL R ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 RDLEQRWLRHV---SPAFAEDPLRVLRVARFAARYAPLGFRVAPETRALMRQLAESGELQ 170
Query: 203 ----ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER W EI++ L P I + + G E+ ++ + E
Sbjct: 171 ALTAERSWKEISRALLEPRPDVFIRTLRDCGALHELLPEIDALFGVPQPAAHHPEIDTGE 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ ++LR + + + I +
Sbjct: 231 HLLAVLRQCAEHGQPLVVRWACLLHDLGKGTTPAEEWPRHIA-HERKGLKLIRAVNTRCK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D ++ L H + +L++L +++P
Sbjct: 290 APRDCQELSLLVGEYHSHCHRALELRPATLLELLQRFDVYRRPQ 333
>gi|91776611|ref|YP_546367.1| metal dependent phosphohydrolase [Methylobacillus flagellatus KT]
gi|122399515|sp|Q1GZ11|CCA_METFK RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|91710598|gb|ABE50526.1| metal dependent phosphohydrolase [Methylobacillus flagellatus KT]
Length = 411
Score = 99.5 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 125/344 (36%), Gaps = 25/344 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ L V+D D + P+ ++++ P + +
Sbjct: 2 RIYTVGGAVRDRLLGLPVKDRDHVVVGSTPEAMVQL------GYRPVGKDF--PVFLHPV 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y D + D RRD TINA+ D+ G +ID G+
Sbjct: 54 THEEYALARTERKTGKGYKGFQVHADPEVTLEQDLARRDLTINAIAEDEHGNLIDPYHGV 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKGLKIL 200
DL + ++ + ED +RILR RF A + E ++ + + + + + L
Sbjct: 114 ADLHAKVLRHV---SPAFCEDPVRILRVARFAARFVEFSVADETMTLMRHMVEDGEVDAL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER+W E+ K L + P + G K + ++ + + E +
Sbjct: 171 VPERVWQELAKGLMEQRPSRMFEVLRACGALKRLLPELDRLFGVPQTAKYHPEIDTGVHV 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
++ + S+ + + + S+ ++ L
Sbjct: 231 MLVIDYAARAG----FSLPVRFAALTHDLGKGTTPAHILPRHIGHEERSVELLQSLVKRL 286
Query: 321 GDKVMIAKLKIFLALHYNN---LTHQDTCFILQVLSDIIHWKKP 361
L + +A H+ + +L+ L + ++P
Sbjct: 287 RVPNDCKDLALLVAKHHGKVHQVGEMKAATVLRFLQETDALRQP 330
>gi|88800681|ref|ZP_01116240.1| Poly(A) polymerase [Reinekea sp. MED297]
gi|88776545|gb|EAR07761.1| Poly(A) polymerase [Reinekea sp. MED297]
Length = 119
Score = 99.5 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L L ++ +VGG VRD + LS +D D+AT P++V ++FS +R
Sbjct: 38 NALKVLYRLQNSGHEAYLVGGCVRDLQLGLSPKDFDVATDATPEQVRKLFSNSRI----I 93
Query: 74 SISYGTIKIICRKKY---FDITTLRS 96
+ + + ++ D+ R
Sbjct: 94 GRRFRIVHVTFGRRNYRGHDLPQFRG 119
>gi|205373866|ref|ZP_03226668.1| tRNA CCA-pyrophosphorylase [Bacillus coahuilensis m4-4]
Length = 347
Score = 99.5 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 74/346 (21%), Positives = 149/346 (43%), Gaps = 14/346 (4%)
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRD-WKADSLRRDFTINAL 127
+ I +GT+ ++ + ++ITT RS+ + R+ K V + D +RRDFT+NA+
Sbjct: 5 TVDLGIEHGTVLVLYNGEPYEITTYRSEEGYNDYRHPKEVRFIRSLEQDLMRRDFTMNAI 64
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+++G++ D G D+ I+ +G+ R+ ED LRI+R RF + G ++
Sbjct: 65 AMNREGRLFDPFDGEKDITREMIRTVGNPSERLTEDALRIMRAVRFQSQLGF-KLEQQTE 123
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-IFLDVQEISLDQL 246
A + L +S ER+ E +KLL AI + I++ L+ Q+ L++
Sbjct: 124 RALKEFSHLLPHVSIERLLVEFDKLLAGPFISIAINTLIEQSIYQHLFDLEDQKSELEKF 183
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + + LL I +K+ I LP LI +
Sbjct: 184 KNYVSSSSELTFDERWLL----FIKLINKEDIHVFLTSLRLPNNRIKQLIKDLHFLDYSL 239
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + +Y G + M+ K+ L + + + I++V + ++ L
Sbjct: 240 QMKLTPY--DYYQMGKERMLRVEKVRSVLTQSTV---NIAEIIEVYDSLPIKERAELCLN 294
Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
G+D++ + G PG + ++ ++E + + +E + + +
Sbjct: 295 GNDLMNWTGRQPGPWLKGMIEEIEEEIAHRNLVNQKEMVKEWVTRW 340
>gi|153827651|ref|ZP_01980318.1| tRNA nucleotidyltransferase [Vibrio cholerae MZO-2]
gi|149737871|gb|EDM52776.1| tRNA nucleotidyltransferase [Vibrio cholerae MZO-2]
Length = 403
Score = 99.5 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 115/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P +
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPN 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D RRD TINA+ D G++ID GG
Sbjct: 54 SKEEHALARTERKTGVGYTGFACHYAPDVTLEDDLQRRDLTINAMAQDNSGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL + ++ + +ED LR+LR RF A + AK +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + + G + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSTHHPEVFLQVLRDCGALAVVLPEIDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I + +
Sbjct: 231 HTLMVAKQAAQLSDSLPVRFAAQVHDLGKG-VTPPSEWPSHKLHCHTGLNIIESLCERIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + + L+VL + W+KP
Sbjct: 290 VPNEFRDLALAVCAQHSNVHRADELKSATKLKVLGLLDVWRKPE 333
>gi|238021942|ref|ZP_04602368.1| hypothetical protein GCWU000324_01847 [Kingella oralis ATCC 51147]
gi|237866556|gb|EEP67598.1| hypothetical protein GCWU000324_01847 [Kingella oralis ATCC 51147]
Length = 411
Score = 99.5 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 65/339 (19%), Positives = 118/339 (34%), Gaps = 17/339 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V+D D D ++R P + + +
Sbjct: 2 QIYLVGGAVRDQLLGLPVKDRDWVVVGADADELLR------QGYQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ T YA + + D LRRD TINA+ D G +ID GG
Sbjct: 54 TREEYALARTERKTAKGYAGFAFYADKSITLEQDLLRRDLTINAMAQDVSGCLIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
+DL+++ ++ + ED +RILR RF A YG + G
Sbjct: 114 SDLQHKILRHV---SPAFAEDPVRILRTARFAARYGFAVAPETMQLMRDMVAAGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L NP I + + G + +V + E
Sbjct: 171 AERVWQELAKGLMEANPRRMIEILRDCGALAILLPEVNALFGVPQRVDYHPEIDTGEHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+L+ + + ++ L + ++
Sbjct: 231 LVLQRAAALGLTLPERYAALLHDVGKALTPADILPKHIGHDTRGIAPIRQINQRWRVPKQ 290
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ + + +N + + I+ +L +++
Sbjct: 291 CAELAELVCAYHIQIHNIGSIKSAGKIINLLKKTDAFRR 329
>gi|326423741|ref|NP_759609.3| tRNA nucleotidyltransferase [Vibrio vulnificus CMCP6]
gi|27360199|gb|AAO09136.1| tRNA nucleotidyltransferase [Vibrio vulnificus CMCP6]
Length = 436
Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 57/344 (16%), Positives = 112/344 (32%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + V D D ++++ P + + K
Sbjct: 31 EVYLVGGAVRDKLLGIPVYDQDWVVVGATAEQML------NAGYSPVGKDF--PVFLHPK 82
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D QG + D GG
Sbjct: 83 TKQEYALARTERKTGQGYKGFECFFSPDVALEEDLLRRDLTINAIAMDSQGVLYDPYGGQ 142
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+NR ++ + +ED LR+LR RF A +
Sbjct: 143 QDLQNRILRHV---SEAFVEDPLRVLRVARFAAKLAPLGFRVADETMQLMQSIVASGELS 199
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
++ER+W E +K L P + + G + ++ + + E
Sbjct: 200 ALTAERVWQEWHKSLLTPAPQQFLAVLRQCGALAVVLPEIDALFGVPQPEKWHPEIDTGI 259
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ +S + + + I ++ +
Sbjct: 260 HTLLVAEQAAKLSSSAVVRFAAQVHDLGKG-VTPPSEWPSHKMHCHTGLKLIKQLCERVR 318
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + + ++++ + + W+K
Sbjct: 319 VPNEFRDLALMVCEQHSNIHRAAELKPQTMVKIFNKLDVWRKAE 362
>gi|218768243|ref|YP_002342755.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
meningitidis Z2491]
gi|73619810|sp|Q9JUB2|CCA_NEIMA RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|121052251|emb|CAM08576.1| putative tRNA nucleotidyltransferase [Neisseria meningitidis Z2491]
gi|319410490|emb|CBY90851.1| multifunctional CCA protein [includes: CCA-adding enzyme (tRNA
nucleotidyltransferase; tRNA
adenylyl-/cytidylyl-transferase; tRNA
CCA-pyrophosphorylase; tRNA-NT) and 2'-nucleotidase and
2',3'-cyclic phosphodiesterase and phosphatase
[Neisseria meningitidis WUE 2594]
Length = 417
Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/341 (19%), Positives = 121/341 (35%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ G + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A Y + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFAARYKFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E K L KNP I + G K + +V + E
Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + ++ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-SDILPRHHGHDLAGVEPVRKVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|298491736|ref|YP_003721913.1| polynucleotide adenylyltransferase region ['Nostoc azollae' 0708]
gi|298233654|gb|ADI64790.1| Polynucleotide adenylyltransferase region ['Nostoc azollae' 0708]
Length = 423
Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 67/412 (16%), Positives = 134/412 (32%), Gaps = 47/412 (11%)
Query: 29 SCIVGGAVRDSLMNL--SVQDIDIATTILPDRVM-RIFSKTRYKVIPTSISYGTIKIICR 85
+VGGAVRD+++ D+D +V I + + +++
Sbjct: 25 VYMVGGAVRDAILGRSAEYLDLDFIIPDDAIKVACAIAKHYQAGFVLLDAERNIARVVFP 84
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
D D RRDFTINA+ + + I
Sbjct: 85 HATVDFA--------------QQEGDSLFTDLHRRDFTINAIAYNPHTQEIIDPLQGYAD 130
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
I + + + +D LR++R +R + G I+ + ++ ER+
Sbjct: 131 IATGILRM-ISRANLQDDPLRLMRAYRQASQLGF-TIEPSTQANIRTLAADINQVAPERV 188
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL-- 263
EI LL + ++ + G+ +F + ++ +L+ V +A + L
Sbjct: 189 RVEIGYLLASSQGTPWLISAWEDGLLSYVFQNAIHENVLKLTAVDQAAHLISENWSKLGE 248
Query: 264 ----------------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN--CNFNQ 305
+ + + Q+ + + + + R +I+ F +
Sbjct: 249 ELQNYVRDTVSTTWLGIAKLACLVHQNPEIAETELQDITYSRVEIRAVITVLRLFPQFKR 308
Query: 306 KTLSIPEIKKLFYLYGDK------VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
LS+ E LF G + +A + A +N T I + L+
Sbjct: 309 INLSLREQYFLFQEVGVMFTSIITLALADDIVIEAKSGHNPLLVYTPLINRYLNPDDLVA 368
Query: 360 KPLFPLTGDD-VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
P ++G + ++ IP VG IL +E + ++
Sbjct: 369 HPSPLVSGREVIIALNIPASPLVGKILSEIAVAQAEGKVSTVEEAI-EFAKQ 419
>gi|48428744|gb|AAT42393.1| tRNA nucleotidyltransferase polyA polymerase [Collimonas
fungivorans Ter331]
Length = 408
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 62/342 (18%), Positives = 117/342 (34%), Gaps = 19/342 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGAVRD L+ L V+D D + PD ++ ++ P + +
Sbjct: 2 KVFAVGGAVRDELLGLPVKDRDYVVVGATPDDMLA----QGFR--PVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y VF D + D +RRD TINA+ G V D G
Sbjct: 54 THEEYALARTERKTAPGYKGFVFHTDPDVTLEQDLVRRDLTINAIARAGDGTVADPFNGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK--KGLKIL 200
DL++R + + ED +RILR RF A + + + + + + L
Sbjct: 114 RDLQDRVFRHV---SDAFAEDPVRILRVARFAARFTDFTVAPETNALMQRMVAAGEVDAL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER+W E+ + L P + G I ++ + + E +
Sbjct: 171 VPERVWQELARGLMESRPSRMFEVLRACGALARILPELDVLWGIPQPEKYHPEIDTGVHV 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
++ + ++ + + + + + +
Sbjct: 231 MMVVDTAAAENHALPVRFAALVHDLGKGATPAAGW-PSHHGHEGLGVELVERVCQRLKVP 289
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
G+ +A + + I+ +L ++KP
Sbjct: 290 GEARDLALMTAREHGNVGRAFELRANTIVNLLGRCDAFRKPQ 331
>gi|241765925|ref|ZP_04763854.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acidovorax delafieldii 2AN]
gi|241364122|gb|EER59337.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Acidovorax delafieldii 2AN]
Length = 413
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/345 (15%), Positives = 113/345 (32%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ V D D P++++ + +P + + +
Sbjct: 2 QIYMVGGAVRDRLLGRPVNDHDWVVVGATPEQMLAL------GYLPVGRDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQ-GKVIDYVGG 141
+ R++ + Y V + D RRD TINA+ +
Sbjct: 54 TREEYALARTERKSGRGYRGFVVQSSPDVTLEEDLSRRDLTINAIASSADASGATGLFDP 113
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKI 199
R+ + + +D +RILR RF A + + ++ + L+ S+ A
Sbjct: 114 YGGARDIAARVLRHVTDAFHDDPVRILRVARFAARFTDFSVAPETLALMRSMVAHGEADH 173
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L +ER+W E+ + L + P + G K + +V + E
Sbjct: 174 LVAERVWQELARGLMEEKPSRMFEVLRACGALKVVLPEVDRLWGVPQRAEYHPEVDTGVH 233
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ +L + + + + + S +K L
Sbjct: 234 LMMVLDMAARLQAPLTVRF----ACLTHDLGKGTTPLDALPRHIGHEQRSARLLKSLSER 289
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQD---TCFILQVLSDIIHWKKP 361
+ +A + N+ +++++ +KP
Sbjct: 290 LRVPTECRETADVVAREHGNIHRSADLGAAALVRLIERCDAIRKP 334
>gi|152978747|ref|YP_001344376.1| polynucleotide adenylyltransferase region [Actinobacillus
succinogenes 130Z]
gi|171704276|sp|A6VN94|CCA_ACTSZ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|150840470|gb|ABR74441.1| Polynucleotide adenylyltransferase region [Actinobacillus
succinogenes 130Z]
Length = 400
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 66/343 (19%), Positives = 123/343 (35%), Gaps = 28/343 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD L++L V+D D PD ++ + + + I +
Sbjct: 3 IYLVGGAVRDQLLHLPVKDRDWLVVGSTPDELLSL------GYLQVGKDF--PVFIHPET 54
Query: 88 YFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ + R++ + Y + D +RRD TINA+ D+ GK+ D G+
Sbjct: 55 HEEYALARTEKKSGSGYTGFICDFSPDITLEDDLIRRDLTINAIAQDKNGKLYDPYHGIE 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203
DL NR ++ I ED LR+LR RF A + + K +
Sbjct: 115 DLNNRLLRHI---SPSFEEDPLRVLRVARFAAKFYHLGFAIAPETLELMKKLSTQGELQH 171
Query: 204 RIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
+ K L +NP + + ++ IS++ + A +
Sbjct: 172 LTAERVWLETEKALMTENPEIYFQTLLKIDALPALMPELATISVENFQYAMTALK----N 227
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
SL++ + + + + + P + N N ++K Y
Sbjct: 228 AVSLIKNMDCNKSAVCFATIFLGIIYVNPSHMTQKQQEQDNHQKNITPCLFEKLKVPAY- 286
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A L ++ +N + + I+ + + W+KP
Sbjct: 287 ---HKELAILAGKYHIYIHNAFNLKSHTIIDLFNKWDVWRKPQ 326
>gi|34497487|ref|NP_901702.1| tRNA adenylyltransferase [Chromobacterium violaceum ATCC 12472]
gi|73619764|sp|Q7MBF4|CCA_CHRVO RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|34103342|gb|AAQ59704.1| tRNA adenylyltransferase [Chromobacterium violaceum ATCC 12472]
Length = 407
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/341 (19%), Positives = 118/341 (34%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ IVGGAVRD L+ L V+D D PD ++ Y+ P + + +
Sbjct: 2 EIYIVGGAVRDRLLGLPVKDRDWVVVGSTPDEMLA----QGYR--PVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLIT-DGRYAKVVFTRDW---KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + T + D RRD TINA+ G + D GG
Sbjct: 54 TQEEYALARTERKIAKGYHGFTFHTSPEVTLEEDLARRDLTINAIAEAADGSLTDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNIDSDGLVASIKAKKGLKILS 201
DL+ ++ + ED +RILR RF A + ++ L+ + L
Sbjct: 114 EDLKAGVLRHV---SEAFAEDPVRILRLARFAARFDFAVAPETMALMRRMVDDGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L P + + G I +V + E +
Sbjct: 171 AERVWQELAKGLMEDKPSRMFLTLRECGALARILPEVDALFGVPQRADHHPEIDCGDHVM 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+L + Q + ++ + + E+ + +
Sbjct: 231 RVL-DYAAAAGQPLAVRFAALGHDLGKALTPAKVLPRHIGHEEGGIAPLAELCRRLRVPN 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D +A + + + +L++L D ++P
Sbjct: 290 DCRDLAHITMVHHTKVHRALELRPDTVLRLLKDCDALRRPE 330
>gi|74318378|ref|YP_316118.1| metal dependent phosphohydrolase [Thiobacillus denitrificans ATCC
25259]
gi|74057873|gb|AAZ98313.1| putative tRNA nucleotidyltransferase/poly(A) polymerase
[Thiobacillus denitrificans ATCC 25259]
Length = 542
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 64/345 (18%), Positives = 122/345 (35%), Gaps = 25/345 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L+ L V D D + PD ++ P + +
Sbjct: 2 KTYVVGGAVRDRLLGLQVSDRDHVVVGATPDEMLAA------GFRPVGKDF--PVFLHPH 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y V + D RRD TINA+ D+ G +ID G
Sbjct: 54 THEEYALARTERKSGRGYKGFVVHAAPEVTLEEDLARRDLTINAIAEDESGTLIDPYDGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKIL 200
DL +T + + ED +RILR RF A + E + + + + L
Sbjct: 114 ADLAAKTFRHV---SEAFAEDPVRILRVARFAARFTEFTVAPETNALMRRMVDSGEVDAL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ER+W EI + L P + + G + +V + E +
Sbjct: 171 VAERVWQEIARGLMETQPSRMFAVLRDCGALARMLPEVDRLFGVPQPPEHHPEVDTGIHV 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
++ + ++ + + + S+ ++ L
Sbjct: 231 MLVIDWAARQGANLAVRFAALTHDLGKGET----SPELWPRHHGHEGASVRLVRALSERL 286
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCF---ILQVLSDIIHWKKPL 362
+L + +A + N+ I+++L + +++P
Sbjct: 287 RAPAECRELAVAVARDHGNVHRALELRPRTIVELLERVDAFRRPE 331
>gi|73619900|sp|Q8CWL6|CCA_VIBVU RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
Length = 407
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 57/344 (16%), Positives = 112/344 (32%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + V D D ++++ P + + K
Sbjct: 2 EVYLVGGAVRDKLLGIPVYDQDWVVVGATAEQML------NAGYSPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D QG + D GG
Sbjct: 54 TKQEYALARTERKTGQGYKGFECFFSPDVALEEDLLRRDLTINAIAMDSQGVLYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+NR ++ + +ED LR+LR RF A +
Sbjct: 114 QDLQNRILRHV---SEAFVEDPLRVLRVARFAAKLAPLGFRVADETMQLMQSIVASGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
++ER+W E +K L P + + G + ++ + + E
Sbjct: 171 ALTAERVWQEWHKSLLTPAPQQFLAVLRQCGALAVVLPEIDALFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ +S + + + I ++ +
Sbjct: 231 HTLLVAEQAAKLSSSAVVRFAAQVHDLGKG-VTPPSEWPSHKMHCHTGLKLIKQLCERVR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + + ++++ + + W+K
Sbjct: 290 VPNEFRDLALMVCEQHSNIHRAAELKPQTMVKIFNKLDVWRKAE 333
>gi|308081100|ref|NP_001183670.1| hypothetical protein LOC100502264 [Zea mays]
gi|238013774|gb|ACR37922.1| unknown [Zea mays]
Length = 215
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 15/126 (11%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR-IFSKTRYKV 70
+D +L L + ++ +VGG VRD L+ +D D+ TT +++ + IF ++R
Sbjct: 89 HTDAWAVLKKLRREGFQAYLVGGCVRDLLLKRVPKDFDVITTASLEQLKKNIFRRSRI-- 146
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW----------KADSLRR 120
+ + R +I++ R+ R V + + DS+RR
Sbjct: 147 --VGKRFPICLLKMRDSVIEISSFRTVANYGNRSEVVDYVAELNGSDVRDILRWKDSMRR 204
Query: 121 DFTINA 126
DFTIN
Sbjct: 205 DFTING 210
>gi|161870084|ref|YP_001599254.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Neisseria
meningitidis 053442]
gi|189081874|sp|A9LZC1|CCA_NEIM0 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|161595637|gb|ABX73297.1| tRNA nucleotidyltransferase [Neisseria meningitidis 053442]
Length = 417
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 70/341 (20%), Positives = 126/341 (36%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V+D D ++ P + + +
Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F D + D +RRD TINA+ D GK+ID GG
Sbjct: 54 THEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDAGGKIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A Y + + + + G
Sbjct: 114 RDLAAGILRHV---SPAFAEDPVRILRTARFAARYRFEIAEETIKLMRQMVENGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E+ K L KNP I + G K + +V + E
Sbjct: 171 AERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRADYHPEIDSGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + + ++ + ++ + + + E+ +
Sbjct: 231 MTLQRAADMGLSLPERYAALLHDLGKAKTP-PDILPRHHGHDLAGVEPVREVNQRLRAPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + + IL VL +++P
Sbjct: 290 HCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330
>gi|123965571|ref|YP_001010652.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. MIT 9515]
gi|123199937|gb|ABM71545.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. MIT 9515]
Length = 415
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 64/399 (16%), Positives = 139/399 (34%), Gaps = 29/399 (7%)
Query: 18 ILSLLNKG-----EDKSCIVGGAVRDSLMNL-------SVQDIDIATTILPDRVMRIFSK 65
+ ++++ K IVGG +RD L+N S DIDI T + + K
Sbjct: 19 LFNIISNYIKLHSNVKVAIVGGYIRDLLINKIHKKTFFSPIDIDIVTEGSSVDLAKFIKK 78
Query: 66 T----RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+I Y T+++ DI + R + +V + D RRD
Sbjct: 79 NISNVELCLIKEFEIYDTVELNINNLKIDIASARKETYEAPGLNPIVQHTSIEEDLKRRD 138
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
F+INA+ + + I + + I +D RI+R R+ + G K
Sbjct: 139 FSINAIAFEFSKQEIYDYFDGIKHIKEKELHL-LHENSIQDDPSRIIRCARYASRLGFKI 197
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ K+ + ++ S + + + + K + L
Sbjct: 198 SKKSLKQSQDTVKRWPWAVINDDTKSRFPPGISIRIRMELSEIYKYDNLAKIVSLLNDWE 257
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLR---FIVLISWQDKKSILSMAKKFSL---PREIRYFL 295
+ L++ I + F + + + +L ++ ++ ++F + ++I
Sbjct: 258 VISILNKNISIDNKFLRGLKWIKKLKGNYILYLLKNSENFELTCQRFFINSKEKKILKDY 317
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
++ N N+K + + + + + + + L + + L + I
Sbjct: 318 LNISNQLENEKEKFLYLTPSNWTEFIETKNLDEETVKLLICNGGEFWKSFFRWLFIYKFI 377
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
K +G + G PG+++GN + + I+
Sbjct: 378 KSKK------SGASLKSEGWHPGQEMGNEIKRLRYIEID 410
>gi|94984719|ref|YP_604083.1| metal dependent phosphohydrolase [Deinococcus geothermalis DSM
11300]
gi|94555000|gb|ABF44914.1| metal dependent phosphohydrolase [Deinococcus geothermalis DSM
11300]
Length = 433
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 82/430 (19%), Positives = 142/430 (33%), Gaps = 67/430 (15%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKIICRKK 87
+ +VGGA RD L ++ +D D A P++ + + P + G ++
Sbjct: 15 ALLVGGAARDWLRGVAPKDFDWAVP-KPEQAAGVLAAQVGGLAFPLDEARGYWRVHVPGG 73
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
+ V D D LRRDFT+NA+ G+++D GG +DLR
Sbjct: 74 VQ--------------HDFVPLPADVTDDLLRRDFTVNAIALTADGQLLDPAGGRDDLRA 119
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI----LSSE 203
R ++ + + + R +D LR R RF G + + A + E
Sbjct: 120 RRLRMVSEMNLR--DDPLRAWRAVRFEVTLGLRLDPATEAAVRRVAADLAAGQLQLPAPE 177
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---------ISLDQLSQVIEAEQ 254
R+ E+ LL +I+ + G+ +++E LD +EA
Sbjct: 178 RVRDELQALLAHPQAAPSILRLEALGLLALSLPELREGIGVPQGGFHHLDVFEHALEALH 237
Query: 255 VF---EWKIDSLLRFIVLISWQDKKSILSM-----------------------AKKFSLP 288
D LR+ L+ K + + LP
Sbjct: 238 QLLARFPDSDLPLRWATLLHDVGKPRTRNTSVRPDRTTFYGHERVGAELARQALTRLRLP 297
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI-------AKLKIFLALHYNNLT 341
+ + + + E ++ + + + +
Sbjct: 298 GAEVDRVAALVRAHMTPLPTNEREARRFVHRRRELLPDLLRLMLADREAARGPQSTPGTR 357
Query: 342 HQDTCFILQVLSDIIHWKKPLFPL-TGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQL 399
H I +VL+ + P PL TG DV+ +PPG VG L + +
Sbjct: 358 HAYAQGIERVLAALEEQPAPPPPLLTGRDVMALLEVPPGPTVGEALRAVAEAQALGEVRD 417
Query: 400 SQEDLHHLLR 409
+QE LR
Sbjct: 418 AQEA-RAFLR 426
>gi|262275012|ref|ZP_06052823.1| tRNA nucleotidyltransferase [Grimontia hollisae CIP 101886]
gi|262221575|gb|EEY72889.1| tRNA nucleotidyltransferase [Grimontia hollisae CIP 101886]
Length = 409
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 117/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L+ L+V+D D D ++R + P + K
Sbjct: 2 KTYLVGGAVRDELLGLNVKDRDWVVVGADIDTMLRAGYQQVGADFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINA+ + G ++D GG
Sbjct: 54 THEEHALARTERKSGKGYTGFVCDFTPQVTLEEDLQRRDLTINAIAKAEDGTLVDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL NR ++ + +ED LR+LR RF A + ++
Sbjct: 114 QDLSNRLLRHV---SPAFVEDPLRVLRVARFAARFHHLGFRVADETLTLMKHIVDSGELE 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
++ER+W E K L +++P + + + G + ++ + + E
Sbjct: 171 ALTAERVWKEWEKSLSSQHPDVFLSVLRDCGALAVVLPEIDALFGVPQPEQWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ R ++ + + + I + +
Sbjct: 231 HTLMVARQAAQLTEDPVIRFAAQVHDLGKGLTPKEEW-PSHKRHTRLGLAPIKALCERIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ A L + +N +++ W+KP
Sbjct: 290 VPNAYRDAALLVCAEHTNVHNAGELKATTFVKIFDRNDCWRKPE 333
>gi|258626902|ref|ZP_05721706.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio mimicus
VM603]
gi|258580825|gb|EEW05770.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio mimicus
VM603]
Length = 403
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P + K
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D+ G++ID GG
Sbjct: 54 TKEEHALARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDESGQLIDPHGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL + ++ + +ED LR+LR RF A +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLAHLGFTVAEETMQLMTDIAQSGELG 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + + G + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSTNHPEVFLQVLRDCGALAVVLPELDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + L+S + + + I +
Sbjct: 231 HTLMVTKQAALLSDSLPVRFSAQVHDLGKG-VTPPSEWPSHKLHCHTGLNIIESLCDRIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + L+VL + W+KP
Sbjct: 290 VPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPD 333
>gi|254522222|ref|ZP_05134277.1| tRNA nucleotidyltransferase [Stenotrophomonas sp. SKA14]
gi|219719813|gb|EED38338.1| tRNA nucleotidyltransferase [Stenotrophomonas sp. SKA14]
Length = 428
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 63/409 (15%), Positives = 126/409 (30%), Gaps = 59/409 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ D D P ++ + P + +
Sbjct: 24 KIYLVGGAVRDRLLQRPAGDRDWVVVGATPAQMEAQGYTAVGRDFPVF--------LHPQ 75
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK-VIDYVGG 141
+ R++ + Y V D + D RRDFTINA+ D+ ++D GG
Sbjct: 76 TGEEYALARTERKSGRGYRGFVVDADPAVTLEEDLQRRDFTINAIACDEDTGSLVDPYGG 135
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL- 200
+ DL R ++ +G A +ED LR+LR RF A + ++ +
Sbjct: 136 VRDLEQRVLRHVGPA---FVEDPLRVLRAARFMARFAPLGFSVAPETMALMREVAASGEL 192
Query: 201 ---SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
ER+W E+ K L + P + +++ I +++ + E
Sbjct: 193 DALVPERVWQELRKALVCECPSAFLRTLHDAHALGPILPELEALYGVPQRAEFHPEVDTG 252
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ + ++ D + + + + +
Sbjct: 253 THQEMVSDMAAKLAPGDDLVGFAALTHDLGKGLTPPDEWPRHIMHEQRGLKPLKALCARL 312
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL--------------- 362
+ + +A+ L+ + + +L++L ++P
Sbjct: 313 KIPTEHQQLAEAVCREHLNVHRIDELRDATVLELLGRCDALRRPERVARIALCCEADKRG 372
Query: 363 ----------------------FPLTGDDVVKYGIPPGKKVGNILVHCK 389
+ D+ + G +G L +
Sbjct: 373 RLGFEDAEYPQGETLKRLHQAALSVQARDLDTTHLK-GPAIGEALAKAR 420
>gi|156973178|ref|YP_001444085.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Vibrio
harveyi ATCC BAA-1116]
gi|166233890|sp|A7MWN9|CCA_VIBHB RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|156524772|gb|ABU69858.1| hypothetical protein VIBHAR_00858 [Vibrio harveyi ATCC BAA-1116]
Length = 406
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 56/344 (16%), Positives = 112/344 (32%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + + D D P+ ++ K P + K
Sbjct: 2 QVYLVGGAVRDHLLGIDIYDRDWVVVGATPEIMLSQGYTAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + + D +RRD TINA+ D+ G + D GG
Sbjct: 54 TKEEHALARTERKSGAGYTGFECFFDQSVTLEEDLIRRDLTINAMAMDEDGNLYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
D+ + ++ + +ED LR+LR RF A +
Sbjct: 114 KDIDAKVLRHV---SQAFVEDPLRVLRVARFAAKLAHLGFSVAEETMQLMRDMAESGELS 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E +K L P + + + G + ++ + + E
Sbjct: 171 TLTPERVWQEWHKSLSTSRPDVFLSVLRDCGALAVVLPEIDALFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I ++
Sbjct: 231 HTLMVAQQAAKLSDSLPVRFAAQVHDLGKG-VTPESEWPSHKMHCHTGLKLIKKLCDRVR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + + I+++L+ W+K
Sbjct: 290 VPNEFRDLALMVCEQHSNIHRAAELKPQTIIKILNKFDVWRKAE 333
>gi|289209615|ref|YP_003461681.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thioalkalivibrio sp. K90mix]
gi|288945246|gb|ADC72945.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thioalkalivibrio sp. K90mix]
Length = 410
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 74/405 (18%), Positives = 130/405 (32%), Gaps = 57/405 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ V + D + P+ + Y+ P + +
Sbjct: 2 QTYLVGGAVRDRLLGRPVHERDYVVVGATPEAM----EAAGYR--PVGRDF--PVFLHPT 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y F + D RRD TINA+ D G + D G
Sbjct: 54 THEEYALARTERKTARGYHGFQFNAAPDVTLEDDLERRDLTINAMAEDADGHLFDPYNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL R ++ + ED +R+LR RF A + +
Sbjct: 114 ADLEARLLRHV---SPAFSEDPVRLLRVARFAAQLEPWGFRVADDTRELMRELVTSGEVD 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL------------ 246
ER+W+E K L++ P I + + G +F +++ +
Sbjct: 171 ALVPERVWAECEKALKSPAPRRFIEVLRDAGALARLFPEIECLFGVPQPARYHPEIDTGV 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF-LISFFNCNFNQ 305
++ +Q +RF L+ K + E R LI
Sbjct: 231 HTLMVLDQATRLSESPEVRFAALVHDLGKGNTDPDILPSHHGHEERGVLLIRALAERLRI 290
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKL------KIFLALHYNNLTHQDTCFILQVLSDII--- 356
++ +G + +L K+ L F+L V +D
Sbjct: 291 PNRYRDLAVRVSRYHGLVHRVFELRPKTVMKLVDGLDALRRPENVEPFLLAVEADFRGRT 350
Query: 357 HWKKPLFP--------------LTGDDVVKYGIPPGKKVGNILVH 387
W+ +P + ++ G GK +G L
Sbjct: 351 GWEDKPYPQADAVRRAVAAAQGVQPQALMAEGYK-GKALGEALDR 394
>gi|257091911|ref|YP_003165552.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
gi|257044435|gb|ACV33623.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 415
Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 120/344 (34%), Gaps = 25/344 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ L V+D D + P+ ++ P + +
Sbjct: 2 QIFTVGGAVRDELLGLPVKDRDYVVVGASPEEMLAR------GFRPVGKDF--PVFLHPS 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWK----ADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y F + D RRD TINA+ G ++D G+
Sbjct: 54 THEEYALARTERKTGPGYRGFAFRAAPEVSLAEDLARRDLTINAIARAADGSLLDPYHGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL--KIL 200
+DL R ++ +G A +ED +R+LR RF A + + + + + G L
Sbjct: 114 DDLSRRVLRHVGPA---FVEDPVRVLRIARFAARFSDFVVAPETVALMRLMVAGGELDHL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ER+W E+ + L P + G + ++ + E +
Sbjct: 171 VAERVWQEVARGLMETRPSRMFEILRECGALARLLPELDRLWGVPQRADYHPEVDTGIHV 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
++ S ++ + + S+ + ++
Sbjct: 231 MMVIDQSAQRS----CALPVRFAVLVHDLGKGTTPDGDLPRHPGHEERSVELVGQVCVRL 286
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKP 361
V L + +A H+ + I+++L ++P
Sbjct: 287 KVPVECRDLAVLVARHHGKVHRAAELGAAAIVRLLEATDAVRRP 330
>gi|229521274|ref|ZP_04410694.1| tRNA nucleotidyltransferase [Vibrio cholerae TM 11079-80]
gi|229341806|gb|EEO06808.1| tRNA nucleotidyltransferase [Vibrio cholerae TM 11079-80]
Length = 403
Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 116/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P + K
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D G++ID GG
Sbjct: 54 SKEEHALARTERKTGVGYTGFACHYAPDVTLEDDLLRRDLTINAMAQDNSGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL + ++ + +ED LR+LR RF A + AK +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + + G + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSTHHPEVFLQVLRDCGALAVVLPEIDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I + +
Sbjct: 231 HTLMVAKQAAQLSDSLPVRFAAQVHDLGKG-VTPPSEWPSHKLHCHTGLNIIESLCERIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + L+VL + W+KP
Sbjct: 290 VPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333
>gi|330505273|ref|YP_004382142.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas mendocina NK-01]
gi|328919559|gb|AEB60390.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas mendocina NK-01]
Length = 409
Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/345 (18%), Positives = 125/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ V ++D ++++ + P + + +
Sbjct: 2 QIYKVGGAVRDRLLGRPVSEVDWVVVGASAEQMLEL------GYRPVGADF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D +RRD T+NA+ D G++ID GG
Sbjct: 54 TGEEYALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTVNAMAEDDHGRLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+ R ++ + ED LR+LR RF A Y ++ +
Sbjct: 114 EDLQARLLRHV---SPAFAEDPLRVLRVARFAARYAPLGFSVAPETLALMRQLAESGELG 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER W EI++ L P I + + G + +V ++ Q E
Sbjct: 171 HLTAERSWKEISRALMEPRPDVFIQVLRDCGALAALLPEVDKLFGVPQPQTHHPEVDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEIKKLF 317
+ S+LR ++ + + + + + ++ I I +
Sbjct: 231 HVLSVLRQCAE--HDQPLNVRWACLLHDVGKGLTPEAEWPRHIAHEHKGLRLIQTINERC 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D +A L H + +L++L +++P
Sbjct: 289 KAPRDCAELAMLVGEFHTHGHRALELRPSTLLELLQRFDVFRRPQ 333
>gi|229527052|ref|ZP_04416447.1| tRNA nucleotidyltransferase [Vibrio cholerae 12129(1)]
gi|229335449|gb|EEO00931.1| tRNA nucleotidyltransferase [Vibrio cholerae 12129(1)]
gi|327484938|gb|AEA79345.1| tRNA nucleotidyltransferase [Vibrio cholerae LMA3894-4]
Length = 403
Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P +
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPN 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D G++ID GG
Sbjct: 54 SKEEHALARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDNSGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL + ++ + +ED LR+LR RF A + AK +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + + + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSTHHPEVFLQVLRDCDALAVVLPEIDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I + +
Sbjct: 231 HTLMVAKQAAQLSDSLPVRFAAQVHDLGKG-VTPPSEWPSHKLHCHTGLNIIESLCERIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + L+VL + W+KP
Sbjct: 290 VPNEFRDLALAVCAQHSNIHRANELKPATKLKVLGLLDVWRKPE 333
>gi|77461363|ref|YP_350870.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas fluorescens Pf0-1]
gi|123603061|sp|Q3K5S5|CCA_PSEPF RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|77385366|gb|ABA76879.1| 2 tRNA nucleotidyltransferase [Pseudomonas fluorescens Pf0-1]
Length = 409
Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 72/405 (17%), Positives = 128/405 (31%), Gaps = 57/405 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ V DID + ++ P + + K
Sbjct: 2 QIYKVGGAVRDRLLGKPVTDIDWVVVGATTEEMLAK------GFRPVGADF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D +RRD TINA+ D Q + D G
Sbjct: 54 SGEEYALARTERKSGRGYGGFTFHASPEVTLEEDLIRRDLTINAMAEDDQQNLTDPYHGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL R ++ + ED LR+LR RF A Y E + +
Sbjct: 114 RDLEERILRHV---SPAFAEDPLRVLRVARFAARYAELGFKVAPETLELMRQLSESGELE 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------------L 246
++ER W EI++ L P I + + G K + +V + L
Sbjct: 171 ALTAERSWKEISRALMEDQPQVFIQVLRDCGALKVLMPEVDALFGVPQPEAHHPEIDSGL 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI---LSMAKKFSLPREIRYFLISFFNCNF 303
+ EQ K +R+ L+ K + ++
Sbjct: 231 HTLSVLEQSALHKQPLTVRWACLLHDLGKGLTPEEEWPRHIAHEHKGLKLIKAVNERFKA 290
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL----------S 353
+ + + ++ +G + + K L L + ++ + +
Sbjct: 291 PKDCQELALLVGQYHTHGHRALELKASTLLELLQSFDVYRRPQRFEEFIVACEMDARGRK 350
Query: 354 DIIHWKKPLFP-LTGDD----------VVKYGIPPGKKVGNILVH 387
+ P L G +++ G G ++G L
Sbjct: 351 GLEQRSYPQADYLRGAANVARGVAVQPLLEKGFK-GPELGEALKR 394
>gi|59712851|ref|YP_205627.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Vibrio
fischeri ES114]
gi|73619895|sp|Q5E2K7|CCA_VIBF1 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|59480952|gb|AAW86739.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase [Vibrio
fischeri ES114]
Length = 407
Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 119/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+N+ V+D D P ++ + +T + P + K
Sbjct: 2 KIYLVGGAVRDSLLNIDVKDKDWVVVGSTPQKMDSLGYQTVGQDFPVF--------LNPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D LRRD TINA+ G++ID G
Sbjct: 54 TKEEYALARTERKSGQGYKGFTCYAEPDVTLEEDLLRRDLTINAIAQADNGELIDPYNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
D+ +RT++ + ED LR+LR RF A + +
Sbjct: 114 QDIIDRTLRHV---SDAFTEDPLRVLRVARFAARFHHLGFTVAPETMHLMKVLVDSGELS 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E K L +++P + + G + ++ + + E
Sbjct: 171 HLTAERVWQEWQKSLSSQHPEIFLSTLKECGALAIVLPELNALFGIPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + L+S + + + I +
Sbjct: 231 HTLMVAQQAALLSQDLPTRFAAQVHDLGKG-VTPESEWPSHKLHCHTGIKLIKRLCDRVR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +A L + + +++ + W+KP
Sbjct: 290 VPNDYRDLALLVCEHHSNIHRAAELRAQTFIKIFDKMDVWRKPE 333
>gi|261211541|ref|ZP_05925829.1| tRNA nucleotidyltransferase [Vibrio sp. RC341]
gi|260839496|gb|EEX66122.1| tRNA nucleotidyltransferase [Vibrio sp. RC341]
Length = 403
Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 68/344 (19%), Positives = 118/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P + K
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLSAGFQAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D+ G+VID GG
Sbjct: 54 SKEEHALARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDESGQVIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL R ++ + +ED LR+LR RF A + AK +
Sbjct: 114 RDLAARVLRHV---SPAFMEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + N G + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSTHHPEVFLQVLRNCGALAVVLPEIDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I + +
Sbjct: 231 HTLMVAKQAAQLSDSLPVRFAAQVHDLGKG-VTPPSEWPSHKLHCHTGLNIIESLCERIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + + L+VL + W+KP
Sbjct: 290 VPNEFRDLALAVCAQHSNVHRADELKSATKLKVLGLLDVWRKPE 333
>gi|188532576|ref|YP_001906373.1| tRNA nucleotidyl transferase [Erwinia tasmaniensis Et1/99]
gi|226702055|sp|B2VGJ4|CCA_ERWT9 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|188027618|emb|CAO95468.1| tRNA nucleotidyl transferase [Erwinia tasmaniensis Et1/99]
Length = 407
Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 118/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L+NL V+D D P +++ + + P + +
Sbjct: 2 KTYLVGGAVRDGLLNLPVKDKDWVVVGASPQQMLDRGYQQVGRDFPVF--------LHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D RRD TINA+ D G D GG
Sbjct: 54 SHEEYALARTERKSGRGYTGFTCYSAPDVTLEQDLARRDLTINAIAQDAGGNYCDPYGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+ R ++ + ED LR+LR RF A + N + ++ L
Sbjct: 114 ADLQQRLLRHV---SGAFNEDPLRVLRVARFAARFAHLNFRIADETLLLMQAMTHSGELH 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E L+ +P + + G +F ++ + E
Sbjct: 171 HLTPERVWKETELALQTPSPQVFFQVLRDCGALAVLFPELDNLYGVPAPAKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S Q+ + + + + + +
Sbjct: 231 HALMALAMAARLS-QEIDIRFATLFHDVGKALTPKVKWPSHHGHGPAGVPLVAALCERLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + Q ++ + + W+KP
Sbjct: 290 VPNALRDLALLVTEFHDLVHTIQCQPPTELVALFDRVDAWRKPQ 333
>gi|226355482|ref|YP_002785222.1| nucleotidyltransferase [Deinococcus deserti VCD115]
gi|226317472|gb|ACO45468.1| putative nucleotidyltransferase [Deinococcus deserti VCD115]
Length = 366
Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 76/396 (19%), Positives = 137/396 (34%), Gaps = 62/396 (15%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82
+ G + +VGGAVRD+L+ + D+D+ P V+ + T ++ +
Sbjct: 27 HAGGGRVALVGGAVRDALLGHTPLDLDVVVEGAP--VLAVAENTGL-PFTFHPAFQNATL 83
Query: 83 -ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK----VID 137
+ + D+ R + V D RRDF +NAL + +D
Sbjct: 84 SLPDGRSADLVQARRETYPQPGANPVPHPGTLTDDLRRRDFGLNALALLVRPNGEPVFLD 143
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
VGGL+DL R ++ + + R +D R++R R A + + +
Sbjct: 144 EVGGLDDLEARQLRPLHASSLR--DDASRLVRGARLAARL---ELHASPELLEQIPDALH 198
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
+ R+W+E+ LL+ P A + G + +L + ++ Q
Sbjct: 199 MAAITPRLWAELKLLLQEPRPGQAARRLQEWGAGALLPG-------LKLLEALDDVQASG 251
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ L+ ++S D+ + L+
Sbjct: 252 TALPWLVYAAAMLSASDQPAALAARMGL-------------------------------- 279
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
G++ + ++ + T + L PLTG DVV G+ P
Sbjct: 280 ---GERPGALLARALSDTYFPDGTPELLLRRLLRPDSY-------SPLTGRDVVALGVTP 329
Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
GK VG L H ++E+ L R L+A
Sbjct: 330 GKAVGQALAHLASLRRTGQVHSAEEERAALQRYLLA 365
>gi|258622328|ref|ZP_05717353.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio mimicus
VM573]
gi|258585344|gb|EEW10068.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio mimicus
VM573]
Length = 403
Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P + K
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D+ G+VID GG
Sbjct: 54 TKEEHALARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDESGQVIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL + ++ + +ED LR+LR RF A +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLAHLGFTVAEETMQLMTDIAQSGELG 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + + G + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSTNHPEVFLQVLRDCGALAVVLPELDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + L+S + + + I +
Sbjct: 231 HTLMVTKQAALLSDSLPVRFAAQVHDLGKG-VTPPSEWPSHKLHCHTGLKVIESLCDRIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + L+VL + W+KP
Sbjct: 290 VPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333
>gi|154276116|ref|XP_001538903.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413976|gb|EDN09341.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 543
Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 83/480 (17%), Positives = 151/480 (31%), Gaps = 98/480 (20%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSK---------------------- 65
GG VRD L+ + DID+A +R +
Sbjct: 55 LRFAGGWVRDKLLGVDSHDIDVAINCMTGERFGEGLKEYLDMPGNLEKYKACHSGNPSII 114
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + P + T D+ LR + +D V + D+LR
Sbjct: 115 DFIKIHKIEKNPEKSKHLETATTKIFGLDIDLVNLRKETYSDDSRNPQVEIGTPEEDALR 174
Query: 120 RDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD T+NAL+ + I+ G D+ N+ I+ +D LR+LR RF +
Sbjct: 175 RDATVNALFYNIHTDTIEDFTGRGLQDMENKIIRTPLAPCQTFKDDPLRVLRLIRFASRL 234
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G I+ K ++ ERI EI K L NPL A+ + G++ IF
Sbjct: 235 GYTIDSDTEEAMKIEDIKVALKAKITQERIGVEIEKTLRGPNPLTALQRINRLGLYDTIF 294
Query: 236 LDVQEISLDQLSQVIEAEQVF------------------EWKIDSLLRFIVLISWQDKKS 277
+ Q+ + +S D L+R + +
Sbjct: 295 ANHQDNAGVDISHWERGYNALALLLSKSTGNITESQKTRNHVRDILIRNENERYFAWFLA 354
Query: 278 ILSMAKKFSLPREIR---------------------------------YFLISFFNCNFN 304
L+ + P+ + Y +I +F
Sbjct: 355 ALAPWTIVADPKPSKSSNPLVPRATTVARDSLRADNRAAGIISAASKNYRMIWDVKSSFL 414
Query: 305 QKTLSIP---EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL----QVLSDIIH 357
+ ++ K+ +L LA+ + Q+ + ++LS I
Sbjct: 415 KNEIADTPAEMRVKMGQFIRSLSHDWRLCFVLAILLEVMQRQEADQVFYSYGKLLSYIEE 474
Query: 358 WK-----KPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
P+ G D++ + G + L + + + + S+E ++ +LR+
Sbjct: 475 SNLLDVCSLRTPINGRDIINALSVKTGPWMTRALDMVIEWQLRNPEETSKEAAINEILRR 534
>gi|319791744|ref|YP_004153384.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Variovorax paradoxus EPS]
gi|315594207|gb|ADU35273.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Variovorax paradoxus EPS]
Length = 421
Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 58/353 (16%), Positives = 115/353 (32%), Gaps = 31/353 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD ++ V D D P+ + R +P + + K
Sbjct: 2 KIFLVGGAVRDRVLGRPVSDHDWLVVGATPEDMTRR------GYLPVGRDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYA---------DQQG 133
+ R++ + Y + D RRD TINA+ +
Sbjct: 54 TREEYALARTERKSAPGYRGFTVHTAPDVTLEQDLARRDLTINAIALPAELVSADGQFEP 113
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+ R+ K + ED +RILR RF A + + ++ + + +
Sbjct: 114 DPDHLADPFHGQRDLRDKVLRHVTDAFREDPVRILRLARFAARFDDFSVAPETMALMREM 173
Query: 194 KK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L ER+W E+ + L P + G + +V + +
Sbjct: 174 VRAGEADALVPERVWQELARGLMEARPSRMFQVLRECGALAVLLPEVDRLWGVPQPEAHH 233
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E + ++ +S S+ + + S+
Sbjct: 234 PEIDTGVHLMMVIDTSARLSA----SLPVRFACLMHDLGKGTTPADVLPRHIGHEKRSVD 289
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
+ + + V I +L +A + N+ + D ++++L ++KP
Sbjct: 290 LLHAVCDRWRVPVEIRELAEVVAREHGNVHRSSELDAAPLVRLLERCDAFRKP 342
>gi|83644220|ref|YP_432655.1| tRNA nucleotidyltransferase [Hahella chejuensis KCTC 2396]
gi|123534381|sp|Q2SM94|CCA_HAHCH RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|83632263|gb|ABC28230.1| tRNA nucleotidyltransferase [Hahella chejuensis KCTC 2396]
Length = 422
Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 64/343 (18%), Positives = 124/343 (36%), Gaps = 23/343 (6%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD+L+ L V+D D P++++ + P + +
Sbjct: 4 YLVGGAVRDALLGLPVKDRDWVVVGATPEQMLDQGYQQVGADFPVF--------LHPESK 55
Query: 89 FDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ G + D LRRD TINA+ D G ++D G D
Sbjct: 56 EEHALARTERKSGKGYTGFICDFSPDISLEDDLLRRDLTINAMAMDDDGNLVDPFNGRQD 115
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKAKKGLKIL 200
L R ++ + ED LR+LR RF + Y ++ L+ I+A LK L
Sbjct: 116 LEARILRHV---SPAFTEDPLRVLRVARFASRYADLGFTVAPETLQLMQDIQASGELKAL 172
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFEWK 259
++ER+W E + L K P + + ++IF ++ + + Q Q
Sbjct: 173 TAERVWQETVRALGQKQPRVYFQVLKDAHALQDIFPELNALFGVPQTPQYHPEVDTGLHS 232
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ +L + + ++ + + + + + +
Sbjct: 233 LMAL--EQACLLSEREEVRFAALIHDLGKGVTPQEEWPKHHNHEAVGVDLVKALTERVKA 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A + H + ++++L W++P
Sbjct: 291 PKLFKELALMACQYHTHCHRALELRANTLVKLLQSCDAWRRPD 333
>gi|258544672|ref|ZP_05704906.1| multifunctional CCA protein [Cardiobacterium hominis ATCC 15826]
gi|258520090|gb|EEV88949.1| multifunctional CCA protein [Cardiobacterium hominis ATCC 15826]
Length = 358
Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 70/370 (18%), Positives = 125/370 (33%), Gaps = 29/370 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+L+ L V D D + ++ + K P + +
Sbjct: 2 EIFLVGGAVRDALLGLPVHDRDWVVVGATAEEMLAQGFRQVGKDFPVF--------LHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R + T + F +AD LRRD TINA+ G+++D GG
Sbjct: 54 SGEEYALARQERKTGRGHQAFAFDFAPEVSLEADLLRRDLTINAMAQAADGRLVDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
D++ R ++ + ED LR+LR RF+A + ++ A L+
Sbjct: 114 ADVQARVLRHV---SPAFAEDPLRVLRLMRFYARFAPLGFSIAAETLALCRAMVAAGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
LS+ERIW+E K L + P + G + D + L ++ ++A E
Sbjct: 171 HLSAERIWAECEKALASPAPQAFFSGLQAVGALNVLGFDASDAQLSAMNARLQAVLAIES 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ L + R + ++ N ++ + +
Sbjct: 231 SAEHRLAIWLQGEDCAAARTALQKALPLPKRYRYWLQLAADYGNAIRRWHELDGETRWML 290
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG 378
L + A+ + L I + LT G
Sbjct: 291 LKASGSLRAEGDVLTLAQLMQLDVALYAEIKNARERVRALSLEE--LTAQY-------RG 341
Query: 379 KKVGNILVHC 388
++G +
Sbjct: 342 AELGEAIRRV 351
>gi|269960197|ref|ZP_06174572.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio harveyi
1DA3]
gi|269835004|gb|EEZ89088.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio harveyi
1DA3]
Length = 406
Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/341 (15%), Positives = 109/341 (31%), Gaps = 19/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ +VGGAVRD L+ + D D +M+ + + K
Sbjct: 2 QVYLVGGAVRDHLLGIDSYDKDWVVVGSTPEMMQ-----SQGYTAVGKDF--PVFLHPKT 54
Query: 88 YFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ G + D +RRD TINA+ D+ G + D GG
Sbjct: 55 KEEHALARTERKSGAGYTGFECFFDQNVTLEEDLIRRDLTINAMAMDEDGNLYDPYGGQR 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----KI 199
D+ + ++ + +ED LR+LR RF A +
Sbjct: 115 DIDAKVLRHV---SQAFVEDPLRVLRVARFAAKLAHLGFSVAEETMLLMRGMAESGELST 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L+ ER+W E +K L P + + + G + ++ + + E
Sbjct: 172 LTPERVWQEWHKSLSTSRPDVFLSVLRDCGALAVVLPEIDALFGVPQPEKWHPEIDTGIH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ + +S + + + + I ++ +
Sbjct: 232 TLMVAQQAAKLSDSLPVRFAAQVHDLGKGVTPKSEW-PSHKMHCHTGLKLIKKLCDRVRV 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ +A + + + I+++L+ W+K
Sbjct: 291 PNEFRDLALMVCEQHSNIHRAAELKPQTIIKILNKFDVWRK 331
>gi|117619276|ref|YP_858232.1| multifunctional CCA protein [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|166233839|sp|A0KPN1|CCA_AERHH RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|117560683|gb|ABK37631.1| multifunctional CCA protein [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 412
Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 121/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L D D + ++++ + + + K
Sbjct: 2 QTYLVGGAVRDRLLGLPQGDRDHLVVGATVEQMLAL------GFTQVGRDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y + D LRRD T+NA+ D+ G++ D GG+
Sbjct: 54 TQQEYALARTERKQGRGYTGFVCHASPEVTLEQDLLRRDLTVNAIAEDEAGQLHDPYGGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+ R ++ + ED LRILR RF A + + + + L
Sbjct: 114 EDLKQRLLRHV---SPAFAEDPLRILRVARFAARFHAQGFVVAPETLALMREMTEAGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E+ K+L P + G +F ++ + E
Sbjct: 171 HLTPERVWKELEKVLLGPTPQVFFEVLRECGALAALFPELDALFGVPAPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L +S + ++ F + + + I + + F
Sbjct: 231 HTMMVLAQACRLSPELAVRFAALCHDFGKG-LTPPEFWPSHHGHGQKGLPLIRDFCERFR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L L H + +L+V W++P
Sbjct: 290 APNECRDLALLVSDLHTHIHIAFELKPATLLKVFDKADAWRRPE 333
>gi|297581070|ref|ZP_06942995.1| tRNA nucleotidyltransferase [Vibrio cholerae RC385]
gi|297534896|gb|EFH73732.1| tRNA nucleotidyltransferase [Vibrio cholerae RC385]
Length = 403
Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P +
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPN 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D G++ID GG
Sbjct: 54 SKEEHALARTERKTGVGYTGFACHYAPDVTLEDDLLRRDLTINAMAQDNSGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL + ++ + +ED LR+LR RF A + K +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLHHLGFTVAKETMQLMTKITQSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + + G + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSTHHPEVFLQVLRDCGALAVVLPEIDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I + +
Sbjct: 231 HTLMVAKQAAQLSDSLPVRFAAQVHDLGKG-VTPSAEWPSHKLHCHTGLNIIESLCERIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + L+VL + W+KP
Sbjct: 290 VPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333
>gi|315179129|gb|ADT86043.1| tRNA nucleotidyltransferase [Vibrio furnissii NCTC 11218]
Length = 404
Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 72/346 (20%), Positives = 118/346 (34%), Gaps = 25/346 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D PD +++ + K P + K
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDKDWVVVGSSPDAMLQAGFQAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G +AD RRD TINA+ DQ G +ID GG
Sbjct: 54 TREEHALARTERKTGAGYTGFACHFAPDVTLEADLQRRDLTINAMAQDQDGTLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL +R ++ + +ED LR+LR RF A + I A L
Sbjct: 114 RDLHDRVLRHV---SEAFVEDPLRVLRVARFAAKLAHLGFSVADETLALMQRISASGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E +K L ++P + + + G + + ++ + + E
Sbjct: 171 HLTPERVWQEWHKSLSTQSPHIFLQVLRDCGALQIVLPELDRLFGVPQPEKWHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ L+S + + + + T
Sbjct: 231 HTLMVAEQAALLSESLTVRFAAQVHDLGKG---VTPASEWPSHKLHCHTGLKIIEALCAR 287
Query: 319 LYGDKVMIAKLKIFLALHYN--NLTHQDTCFILQVLSDIIHWKKPL 362
+ A H N L+VL+ + W+KP
Sbjct: 288 VKVPNEFRDLALAVCAQHSNVHRAAELKPATKLKVLNQLDVWRKPQ 333
>gi|229524432|ref|ZP_04413837.1| tRNA nucleotidyltransferase [Vibrio cholerae bv. albensis VL426]
gi|229338013|gb|EEO03030.1| tRNA nucleotidyltransferase [Vibrio cholerae bv. albensis VL426]
Length = 403
Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 115/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ +T K P +
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQTVGKDFPVF--------LHPN 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D G++ID GG
Sbjct: 54 SKEEHALARTERKTGVGYTGFACHYAPDVTLEDDLLRRDLTINAMAQDNSGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL + ++ + +ED LR+LR RF A + AK +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + + + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSTHHPEVFLQVLRDCDALAVVLPEIDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I + +
Sbjct: 231 HTLMVAKQAAQLSNSLPVRFAAQVHDLGKG-VTPPSEWPSHKLHCHTGLNIIESLCERIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + L+VL + W+KP
Sbjct: 290 VPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333
>gi|20806638|ref|NP_621809.1| tRNA nucleotidyltransferase/poly(A) polymerase [Thermoanaerobacter
tengcongensis MB4]
gi|20515085|gb|AAM23413.1| tRNA nucleotidyltransferase/poly(A) polymerase [Thermoanaerobacter
tengcongensis MB4]
Length = 466
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 68/472 (14%), Positives = 138/472 (29%), Gaps = 93/472 (19%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSI 75
++ L + IVGG +RD ++N +D D + + ++ + K +P
Sbjct: 6 RLIRKLGREAYNVYIVGGYIRDRILNKEAKDYDFVVKGNAEEIAKLAAEKMGGSFVPFMA 65
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
GT +I+ + D T LR D D RDFTINA+
Sbjct: 66 EKGTYRIVVGDEILDFTNLRGK--------------DIYEDLAHRDFTINAMAIRLTDHF 111
Query: 136 -----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
ID GGL D++NR I+ A + ED LR LR RF A Y ++
Sbjct: 112 EFEYIIDPFGGLKDIKNRKIR--HVADYTFREDPLRALRAVRFAATYKFDIDEATKAKIK 169
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKN------------PLNAIVHMYNGGIFKEIFLDV 238
+A + + + E + N + + + +
Sbjct: 170 EEAHLLKNVAPERIMNEIFMIIREKDSHKYLRLMEELSLMENIFEEVAKLKEVGKCYYQL 229
Query: 239 QEISLDQLSQVIEAEQVFEWKIDS----------------------------LLRFIVLI 270
+ + V E E + +L +
Sbjct: 230 INAWIHSIRAVEEYENIISAMRFPKDVEDLVSEYLEKPMSPGNKVKDIIKLGILFHDIGK 289
Query: 271 SWQDKKSILSMAKKFSLP-------------------------REIRYFLISFFNCNFNQ 305
+ + + ++ + + Y
Sbjct: 290 ADSIYIDVENRLHFYNHEIKGAEIIKKMASRMRIPKKETNLLKKLVLYHKKPLDYYIEGV 349
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ-----VLSDIIHWKK 360
++ +++A L + A + +D + + +
Sbjct: 350 NNKTLFRFFYHLKDNAIGILLASLADYTASRLSFGKEEDIPRYENFITKLLKRYVEFKET 409
Query: 361 PLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
L+ D++ + + GKK+G IL ++ + ++ + + ++
Sbjct: 410 EKPLLSPLDIILNFDVKDGKKLGQILYEIRKNRFYGEIKTKEDAVEFIKERM 461
>gi|261822804|ref|YP_003260910.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pectobacterium wasabiae WPP163]
gi|261606817|gb|ACX89303.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pectobacterium wasabiae WPP163]
Length = 414
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 70/342 (20%), Positives = 121/342 (35%), Gaps = 17/342 (4%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL++L V + D P+ ++ + K P + +
Sbjct: 2 KIYLVGGAVRDSLLSLPVTEKDWVVVGATPEHLLAQGYQQVGKDFPVFL-----HPVSHD 56
Query: 87 KYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+Y T R G + D LRRD TINA+ +QG++ID G DL
Sbjct: 57 EYALARTERKSGKGYTGFVCHAAPDVTLEQDLLRRDLTINAIARTEQGELIDPYHGRRDL 116
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----KILS 201
NR ++ + ED LR+LR RF A + ++ K L+
Sbjct: 117 ENRVLRHV---SDAFGEDPLRVLRVARFAARFAHLGFQIAEETMALMQKMVHEGELAYLT 173
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
ER+W E K L +P + + G +F +V + E
Sbjct: 174 PERVWKETEKALSTSSPDVYFQVLRDCGALAVLFPEVDNLYGVPAPAKWHPEIDTGIHTM 233
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLFYLY 320
+ +S + + + + + + + + + E + +
Sbjct: 234 MTVAMAARLS--PEIDVRFATLCHDVGKGLTPPELWPRHHGHGPAGVKLVEALCQRLRVP 291
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+AKL + + +L++ I W+KP
Sbjct: 292 NPIRDLAKLVAEYHDLVHTVQVLQPKTLLKLFDAIDVWRKPQ 333
>gi|329894610|ref|ZP_08270416.1| tRNA nucleotidyltransferase [gamma proteobacterium IMCC3088]
gi|328922964|gb|EGG30292.1| tRNA nucleotidyltransferase [gamma proteobacterium IMCC3088]
Length = 378
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 83/389 (21%), Positives = 142/389 (36%), Gaps = 39/389 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRDSL+NL V + D P+ ++ + K P +
Sbjct: 2 KTYLVGGAVRDSLLNLPVHERDWVVVGGSPEAMLEQGFRAVGKDFPVF--------LHPS 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D RRD TINA+ + G +ID GG
Sbjct: 54 TNEEYALARTERKQGQGYHGFACHYAPDVSLEEDLARRDLTINAMAQTKDGTLIDPYGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKAKKGLK 198
DL R ++ + DA ED LR+LR RF A + ++ L+ +I A L
Sbjct: 114 VDLEARVLRHVTDA---FSEDPLRVLRLARFAARFKRLGFSIAPETQRLMQTIVASGELT 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE------IFLDVQEISLDQLSQVIEA 252
L ER+W E++K L ++P I + G ++ D L+Q
Sbjct: 171 TLPHERLWQELHKALGTQHPGEFIAVLAQCGALQQLLKVDNTGPTTFTPWTDTLNQSAML 230
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ I + L + ++ +F LP+ I + Q +
Sbjct: 231 CRNTTHHIAAWLLRGSKQPTLKDV-LPALTSQFGLPKRIVEHIAQLRVHPELQAAPNAQA 289
Query: 313 IKKLFYLYGDKVMI------AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+F D + A L A H+ T + L+ ++
Sbjct: 290 PDSVFNSLRDCGALKQGEGFADLLSTAAHLARIDNHEQTNNRSEWLALAEMCREIG---R 346
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINS 395
G+ V+ + G +G + ++E + +
Sbjct: 347 GN--VEANLT-GPAIGQAIEQARREAVAN 372
>gi|289577360|ref|YP_003475987.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter italicus Ab9]
gi|289527073|gb|ADD01425.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter italicus Ab9]
Length = 467
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 85/477 (17%), Positives = 163/477 (34%), Gaps = 100/477 (20%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSI 75
++ L K IVGG +RD ++N +D D +R+ ++ + K +P
Sbjct: 6 KLIRKLGKEAYNLYIVGGYIRDRILNREAKDYDFVVQENAERIAKLAAEKLGGTFVPFMA 65
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY-----AD 130
GT +++ + D T LR + D D RDFT+NA+
Sbjct: 66 EKGTYRVVVGDEILDFTNLRGE--------------DIYIDLAHRDFTMNAMAIKLTDYF 111
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +ID GG+ D++NR IK +G ED LR LR RF A Y + +ID
Sbjct: 112 EFEYIIDPFGGVTDIKNRKIKHVGVM--TFKEDPLRALRAIRFAATY-KFDIDEATKAKI 168
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN-------------GGIFKEIFLD 237
+ + +K ++ ERI +EI +L+ KN + M + + +
Sbjct: 169 REEAELIKQVAPERIMNEIFIILKEKNSHKYLRMMEDLKLMENIFEEVAKMKEVGKCYYH 228
Query: 238 VQEISLDQLSQVIEAEQVFE-------------------WKIDSLLRFIVLISWQDKKSI 278
+ + L V E E + D+ ++ I+ +
Sbjct: 229 LTNAWIHSLKTVEEYENIVNSMRFPKGVYDIVSEYLNRKLSSDNKVKDIIKLGALFHDIG 288
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
+ A + ++ +K S ++ K K+++ +K +
Sbjct: 289 KTEALYIDTENRVHFYNHEIKGAEIVKKIASRMKMPKKESSLLKKLVLYHMKPLMYYING 348
Query: 339 NLTHQDTC------------------------------------------FILQVLSDII 356
T++ +L+ +
Sbjct: 349 GPTNKSLFRFFSELKDDSIAILLLSQADFTATRLNLGKEEEIPKFTDFITRLLKRYVEFK 408
Query: 357 HWKKPLF-PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+KPL PL ++ + + G+K+G IL ++ Q + + + ++
Sbjct: 409 ETEKPLLSPLD--IIINFDVKDGEKLGQILYEIRKNRFYGEIQDKNDAIEFVKERMK 463
>gi|260771264|ref|ZP_05880191.1| tRNA nucleotidyltransferase [Vibrio furnissii CIP 102972]
gi|260613861|gb|EEX39053.1| tRNA nucleotidyltransferase [Vibrio furnissii CIP 102972]
Length = 405
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 71/346 (20%), Positives = 118/346 (34%), Gaps = 25/346 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L + D D PD +++ + K P + K
Sbjct: 3 QIYLVGGAVRDQLLQLPIYDKDWVVVGSSPDAMLQAGFQAVGKDFPVF--------LHPK 54
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G +AD RRD TINA+ DQ G +ID GG
Sbjct: 55 TREEHALARTERKTGAGYTGFACHFAPDVTLEADLQRRDLTINAMAQDQDGTLIDPYGGQ 114
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL +R ++ + +ED LR+LR RF A + I A L
Sbjct: 115 RDLHDRVLRHV---SEAFVEDPLRVLRVARFAAKLAHLGFSVADETLALMQRISASGELA 171
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E +K L ++P + + + G + + ++ + + E
Sbjct: 172 HLTPERVWQEWHKSLSTQSPHIFLQVLRDCGALQIVLPELDRLFGVPQPEKWHPEIDTGV 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ L+S + + + + T
Sbjct: 232 HTLMVAEQAALLSESLTVRFAAQVHDLGKG---VTPASEWPSHKLHCHTGLKIIEALCAR 288
Query: 319 LYGDKVMIAKLKIFLALHYN--NLTHQDTCFILQVLSDIIHWKKPL 362
+ A H N L+VL+ + W+KP
Sbjct: 289 VKVPNEFRDLALAVCAQHSNVHRAAELKPATKLKVLNQLDVWRKPQ 334
>gi|238028856|ref|YP_002913087.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia glumae BGR1]
gi|237878050|gb|ACR30383.1| Multifunctional CCA protein [Burkholderia glumae BGR1]
Length = 415
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 121/349 (34%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGA+RD+L+ L VQD D + P+++ P + + +
Sbjct: 3 IYVVGGAIRDALLGLPVQDRDYVVVGATPEQLAAR------GFRPVGKDF--PVFLHPQT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQG------KVID 137
+ + R++ T Y F D RRD TINA+ + ++ID
Sbjct: 55 HEEYALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREIDPDGRITGELID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK--K 195
GG DL + + +G A +ED +RILR RF A + + + + L +
Sbjct: 115 PFGGRADLAAKRFRHVGPA---FVEDPVRILRVARFAARFADFTVAPETLALMREMVAAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L ER+W E+++ L P + G I +V + E
Sbjct: 172 EVDALVPERVWQEVSRGLMEAKPSRMFAVLRECGALARILPEVDALFGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + S+ + + + S+ ++
Sbjct: 232 TGVHVMMVIDHAAKHA----YSLPVRFAALTHDLGKATTPAEVLPRHIGHEGRSVDLLRP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++L +KP
Sbjct: 288 LCERLRVPNECRDLALLVAREHGNLHQVMSMSAAALVRLLERADALRKP 336
>gi|237809404|ref|YP_002893844.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Tolumonas auensis DSM 9187]
gi|259585856|sp|C4LB55|CCA_TOLAT RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|237501665|gb|ACQ94258.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Tolumonas auensis DSM 9187]
Length = 410
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 73/343 (21%), Positives = 124/343 (36%), Gaps = 19/343 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ +VGGAVRD+L+ L V + D + + P + + +
Sbjct: 2 QIYLVGGAVRDTLLGLPVTERDYVVVGSEAQTL-----LDLGYQPVGRDF--PVFLHPQT 54
Query: 88 YFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R + G + D LRRD TINA+ DQ G++ D GG++
Sbjct: 55 KEEYALARIERKQGKGYTGFACYAAPDVTLEQDLLRRDLTINAIAQDQDGQLYDPYGGIS 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL NR ++ I ED LR+LR RF A + + + L
Sbjct: 115 DLNNRVLRHI---SPAFSEDPLRVLRVARFAARFHHLGFYIAPETLALMRKLSRSGELNH 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L+ ERIW EI K+L +NP +++ + +V + E
Sbjct: 172 LTPERIWKEIEKVLSGRNPQIFFEILHDCEALNVLLPEVDALFGIPARPDWHPEVDTGIH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ LR S Q ++ + + + + + + T I E+ K +
Sbjct: 232 VMMALREASQRSEQLAVRFATLCHDLGKAQTPAHI-LPSHHGHGERGTPLIRELCKRLKV 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D +A L L + +L++ + W+KP
Sbjct: 291 PNDCRDLAILVSELHSLVHTALQLRPATMLKLFDRLDVWRKPE 333
>gi|149189053|ref|ZP_01867341.1| tRNA nucleotidyltransferase [Vibrio shilonii AK1]
gi|148837016|gb|EDL53965.1| tRNA nucleotidyltransferase [Vibrio shilonii AK1]
Length = 408
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 59/346 (17%), Positives = 117/346 (33%), Gaps = 25/346 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P++++ + + K
Sbjct: 2 QVYLVGGAVRDQLLKLEVYDKDWVVVGATPEQMLA------DGFQAVGKEF--PVFLHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D +RRD TINA+ D G++ID G
Sbjct: 54 SKQEHALARTERKAGKGYTGFECFSSPDVTLEQDLMRRDLTINAMAQDDSGRIIDPYNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL+++ ++ + +ED LR+LR RF A + +
Sbjct: 114 QDLKDKVLRHV---SPAFVEDPLRVLRVARFAAKLRHLGFTVAPETMDLMKSIVNDGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L ++P + + + G + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLTTRHPEVFLDVLRSCGALAVVLPELDALFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLP--REIRYFLISFFNCNFNQKTLSIPEIKKL 316
+ + L+S + + + S+ ++
Sbjct: 231 HTLMVAQQAALLSTSPIVRFAAQVHDLGKALTPAEEWPSHKLHTHTGQKAIKSLCSRVRV 290
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
Y D +A + + +++ + W+KP
Sbjct: 291 PNEYRD---LAVAVCAQHSNVHRAAELRPATFIKIFGQLDVWRKPE 333
>gi|307824886|ref|ZP_07655108.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Methylobacter tundripaludum SV96]
gi|307733933|gb|EFO04788.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Methylobacter tundripaludum SV96]
Length = 407
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 69/351 (19%), Positives = 129/351 (36%), Gaps = 25/351 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V++ D P+ ++ + ++ P + + K
Sbjct: 2 EIYLVGGAVRDKLLELPVKERDWVVIGETPESMV----RQGFR--PVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y + D +RRD TINA+ +G+++D GG
Sbjct: 54 THEEYALARTERKTAPGYKGFTVHASPDVSLEQDLIRRDLTINAMAMTPEGQLVDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198
DL R + I ED +RILR RF A YG ++ L+ S+ +
Sbjct: 114 RDLEKRIFRHI---SPAFAEDPVRILRIARFAARYGHLGFTLAEETRILMRSMVTAGEVD 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER+W+E+ K L K+P + + +IF ++ + + E
Sbjct: 171 HLVPERVWAELFKALGEKSPSAFFYTLKDCAALDKIFPEINGLFGVPQPEKYHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ L +S + ++ + + + Q + +
Sbjct: 231 HVMLCLEQAARLSSSLEVRFAALVHDLGKGMSPKEHWPHHY-GHEAQGLPILECMCSRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK----PLFPL 365
+ +A + H + I +L+ + +K P F L
Sbjct: 290 VPNSFKALALQVMQYHTHCHRAFELRASTITDMLAALGAFKPVNKLPEFLL 340
>gi|163802697|ref|ZP_02196588.1| tRNA nucleotidyltransferase [Vibrio sp. AND4]
gi|159173585|gb|EDP58405.1| tRNA nucleotidyltransferase [Vibrio sp. AND4]
Length = 406
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 115/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + D D P+ ++ K P + K
Sbjct: 2 QVYLVGGAVRDHLLGIDSNDKDWVVVGATPEMMLAQGYTAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + + D +RRD TINA+ D +GK+ D GG
Sbjct: 54 NKEEHALARTERKSGAGYTGFECFFDQSVTLEEDLIRRDLTINAMAMDDKGKLYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
NDL+N+ ++ + +ED LR+LR RF A + +
Sbjct: 114 NDLQNKVLRHV---SQAFIEDPLRVLRVARFAAKLAHLGFNVAEETIQLMRDVAESGELS 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E +K L P + + G + +V + + E
Sbjct: 171 TLTPERVWQEWHKSLSTSCPDVFLSVLRECGALAIVLPEVDALFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I ++
Sbjct: 231 HTLMVAKQAAKLSDSLSVRFAAQVHDLGKG-VTPESEWPSHKMHCHTGLKLIKKLCDRVR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + + I+++L+ W+K
Sbjct: 290 VPNEFRDLALMVCEQHSNIHRAAELKPQTIIKILNKFDVWRKAE 333
>gi|153214504|ref|ZP_01949413.1| tRNA nucleotidyltransferase [Vibrio cholerae 1587]
gi|124115306|gb|EAY34126.1| tRNA nucleotidyltransferase [Vibrio cholerae 1587]
Length = 403
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P +
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPN 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D G++ID GG
Sbjct: 54 SKEEHALARTERKTGVGYTGFACHYAPDVTLEDDLLRRDLTINAMAQDNSGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL + ++ + +ED LR+LR RF A + AK +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + + + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSTHHPEVFLQVLRDCDALAVVLPEIDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I + +
Sbjct: 231 HTLMVAKQAAQLSDSLLVRFAAQVHDLGKG-VTPPSEWPSHKLHCHTGLNIIESLCERIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + L+VL + W+KP
Sbjct: 290 VPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333
>gi|262166486|ref|ZP_06034223.1| tRNA nucleotidyltransferase [Vibrio mimicus VM223]
gi|262026202|gb|EEY44870.1| tRNA nucleotidyltransferase [Vibrio mimicus VM223]
Length = 403
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 67/346 (19%), Positives = 118/346 (34%), Gaps = 25/346 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P + K
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D+ G+VID GG
Sbjct: 54 TKEEHALARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDELGQVIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL + ++ + +ED LR+LR RF A +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLAHLGFTVAEETMQLMTDIAQSGELG 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + + G + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSTNHPEVFLQVLRDCGALAVVLPELDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR--YFLISFFNCNFNQKTLSIPEIKKL 316
+ + L+S + R + + S+ + ++
Sbjct: 231 HTLMVTKQAALLSDSLPVRFAAQVHDLGKGVTPRSEWPSHKLHCHTGLKIIESLCDRIRV 290
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +A + + L+VL + W+KP
Sbjct: 291 PNEFRD---LALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333
>gi|37197496|dbj|BAC93335.1| tRNA nucleotidyltransferase [Vibrio vulnificus YJ016]
Length = 436
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 56/344 (16%), Positives = 112/344 (32%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + V D D ++++ P + + K
Sbjct: 31 EVYLVGGAVRDKLLGIPVYDQDWVVVGATAEQML------NAGYSPVGKDF--PVFLHPK 82
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D QG + D GG
Sbjct: 83 TKQEYALARTERKTGQGYKGFECFFSPDVTLEEDLLRRDLTINAIAMDSQGVLYDPYGGQ 142
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL++R ++ + +ED LR+LR RF A +
Sbjct: 143 QDLQDRILRHV---SEAFVEDPLRVLRVARFAAKLAPLGFRVADETMQLMQSIVASGELS 199
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
++ER+W E +K L P + + G + ++ + + E
Sbjct: 200 ALTAERVWQEWHKSLLTPAPQQFLAVLRQCGALAVVLPEIDALFGVPQPEKWHPEIDTGI 259
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ +S + + + I ++ +
Sbjct: 260 HTLLVAEQAAKLSSSAVVRFAAQVHDLGKG-VTPPSEWPSHKMHCHTGLKLIKQLCERVR 318
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + + ++++ + + W+K
Sbjct: 319 VPNEFRDLALMVCEQHSNIHRAAELKPQTMVKIFNKLDVWRKAE 362
>gi|317493723|ref|ZP_07952140.1| poly A polymerase head domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918050|gb|EFV39392.1| poly A polymerase head domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 416
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 69/343 (20%), Positives = 125/343 (36%), Gaps = 21/343 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD +NL V D D P+ ++ + K P + K
Sbjct: 2 KIFLVGGAVRDKRLNLPVYDRDWVIEGATPEELIAQGFEQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y V + D LRRD TINA+ G +ID GGL
Sbjct: 54 SHEEYALARTERKSGRGYTGFVTYFAPDVTLEQDLLRRDLTINAMAESADGTLIDPYGGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID----SDGLVASIKAKKGLK 198
+DL N+ ++ + ED LR+LR RF A + + L+ + L+
Sbjct: 114 DDLNNKVLRHV---SDAFHEDPLRVLRVARFAARFAHLGFHVAAETMALMTQMTTDNELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E K L ++P + + G +F ++ + + E
Sbjct: 171 NLTPERVWRETEKALMTQSPQIYFQVLRDCGALAILFPEIDNLFGVPAPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L ++ + ++ L + + + + +
Sbjct: 231 HTLMALAMAAKLTEEIDVRFATLTHDLGKG-LTPPELWPHHHGHGPAGVKLVEALCQRMR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ +AK+ + + +L++ I W+KP
Sbjct: 290 VPNAVRELAKIVAEYHDLIHTVEKLRPVTLLKLFDSIDVWRKP 332
>gi|300724874|ref|YP_003714199.1| tRNA nucleotidyl transferase [Xenorhabdus nematophila ATCC 19061]
gi|297631416|emb|CBJ92113.1| tRNA nucleotidyl transferase [Xenorhabdus nematophila ATCC 19061]
Length = 390
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 63/331 (19%), Positives = 121/331 (36%), Gaps = 20/331 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L V + D P+ ++ + K P + +
Sbjct: 2 KIYLVGGAVRDQLLELPVTERDWVVVGGNPEALLSQGYQQVGKDFPVF--------LHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D LRRD TINA+ +G+VID G+
Sbjct: 54 THEEYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIAQTAEGEVIDPYHGV 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
+DL NRT++ + ED LR+LR RF A + S+ +
Sbjct: 114 DDLNNRTLRHV---SAAFSEDPLRVLRLARFAARFSHLGFSIAPETQSLITEIAASGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E K L +++P + + G +F ++ + + + + + +
Sbjct: 171 SLTPERVWRETEKALTSQSPHVYFQVLRDCGALAVLFPEIDHLFNIPVQEKTHSNRNAGF 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+LR +S ++ + + L + + +
Sbjct: 231 HSLHVLRMATQLSNVIDIRFAALCSHIGSTPAKQMCERLRIPNSVRDLALIVTQYHPWVH 290
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
++ L +F A+ + I+
Sbjct: 291 TVEQRLPEELLTLFNAVDAWRKPQRIEQLII 321
>gi|225024972|ref|ZP_03714164.1| hypothetical protein EIKCOROL_01861 [Eikenella corrodens ATCC
23834]
gi|224942202|gb|EEG23411.1| hypothetical protein EIKCOROL_01861 [Eikenella corrodens ATCC
23834]
Length = 413
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 59/341 (17%), Positives = 115/341 (33%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+L+ V+D D ++ P + + +
Sbjct: 2 EIYLVGGAVRDALLGREVKDRDWVVVGADAPAMLAA------GYQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T YA F + + D RRD TINA+ D G++ID GG
Sbjct: 54 THEEYALARTERKTGRGYAGFTFHAEPDVTLEQDLQRRDLTINAMAQDAAGQIIDPFGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-S 201
DL ++ + ED +RILR RF A YG + + + + G
Sbjct: 114 ADLAAGILRHV---SPAFAEDPVRILRTARFAARYGFQVAPETLRLMADMVQNGEADALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E + L P+ I + G + +V+ + E
Sbjct: 171 AERVWQEFARGLMEARPVRMIEVLRQCGALAVLLPEVEALFGVPQRADYHPEIDCGIHTL 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L+ + ++ ++ + + + + + + +
Sbjct: 231 LTLQSAADAGLSLPERYAALLHDLGKA-ATAPEILPAHHGHEEAGVPLVQAVNQRWKVPK 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A + ++L +++P
Sbjct: 290 ACADLAVQVCRWHGRLHKAAELRPQTAAKILQQTDAYRRPE 330
>gi|153831058|ref|ZP_01983725.1| tRNA nucleotidyltransferase [Vibrio cholerae 623-39]
gi|148873454|gb|EDL71589.1| tRNA nucleotidyltransferase [Vibrio cholerae 623-39]
Length = 403
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 113/344 (32%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P +
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPN 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D RRD TINA+ D G++ID GG
Sbjct: 54 SKEEHALARTERKTGVGYTGFACHYAPDVTLEEDLQRRDLTINAMAQDNSGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL + ++ + +ED LR+LR RF A + AK +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E NK L +P + + + + ++ + + E
Sbjct: 171 HLTAERVWQEWNKSLSTHHPEVFLQVLRDCDALAVVLPEIDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I + +
Sbjct: 231 HTLMVAKQAAQLSDSLLVRFAAQVHDLGKG-VTPPSEWPSHKLHCHTGLNIIESLCERIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + L+VL + W+KP
Sbjct: 290 VPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333
>gi|294139661|ref|YP_003555639.1| tRNA nucleotidyltransferase [Shewanella violacea DSS12]
gi|293326130|dbj|BAJ00861.1| tRNA nucleotidyltransferase [Shewanella violacea DSS12]
Length = 413
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 62/344 (18%), Positives = 120/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+ L ++D D + ++++ + +
Sbjct: 2 KIYLVGGAVRDSLLKLPIKDRDYMVVGATQEQMLAK------GFHQVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ T Y + D LRRD TINA+ D G + D GG+
Sbjct: 54 TQQEYALARTERKTGSGYGGFTCHASADVTLEQDLLRRDLTINAIAQDDDGNLYDPYGGV 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
NDL N+ ++ + +ED LR+LR RF A + + ++ A
Sbjct: 114 NDLNNKLLRHV---SDAFIEDPLRVLRVARFAARFHAQGFTIADETLTMMANISRSGELE 170
Query: 203 ERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ K L NP I + G K +F ++ + E
Sbjct: 171 ALTAERVFLELNKALSTDNPQIFIHVLKQCGALKVLFPEIHALFGVPQPAQWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L ++ + ++ + + + + + I +
Sbjct: 231 HTLMVLEQAAKLTKDNSVRFAALVHDLGKALSPK-EDLPKHHGHGQKGLAPIKALCARIK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L L + +N+ ++++ + W+KP
Sbjct: 290 VPNEYRDLALLVSDLHQNIHNIDQLRPDTLIKMFNKADLWRKPQ 333
>gi|168013056|ref|XP_001759217.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689530|gb|EDQ75901.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/249 (21%), Positives = 93/249 (37%), Gaps = 14/249 (5%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76
+L+ L +S +VGG+VRD L+ +D DI TT P +V FS + I
Sbjct: 99 RVLTRLLDAGYRSYLVGGSVRDMLVKQVPKDFDILTTAEPKQVKAAFS---GRCIIVGRR 155
Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---------KADSLRRDFTINAL 127
+ + ++++ ++ R +SLRRDFT+N +
Sbjct: 156 FPVCHVTSLNTVVEVSSFSTNSGNIKRITYEPVVGTEGWSEDDFSRWDNSLRRDFTVNGI 215
Query: 128 YA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ + DYVGGL DLR I+ + A ED RILR R A S
Sbjct: 216 MYDPFKCIIYDYVGGLRDLRRCKIRTVIPALESFEEDSARILRAIRIAARLEFSFATSTA 275
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
L + + +N ++ + ++ ++ G+ + + L
Sbjct: 276 NAIRQLKSSILTLNKTRLQLE-VNTMMAYGSSERSVRLLWRYGVLEYLLPFQARQHFGLL 334
Query: 247 SQVIEAEQV 255
++ +
Sbjct: 335 ARYFSNTNL 343
>gi|16273496|ref|NP_439748.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Haemophilus influenzae Rd KW20]
gi|260580382|ref|ZP_05848211.1| tRNA nucleotidyltransferase [Haemophilus influenzae RdAW]
gi|1168822|sp|P45269|CCA_HAEIN RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|1574448|gb|AAC23250.1| tRNA nucleotidyltransferase (cca) [Haemophilus influenzae Rd KW20]
gi|260093059|gb|EEW76993.1| tRNA nucleotidyltransferase [Haemophilus influenzae RdAW]
Length = 416
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 72/349 (20%), Positives = 121/349 (34%), Gaps = 25/349 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L V+D D I P ++ + + K P + K
Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVF--------LNPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ + G++ID GG
Sbjct: 54 TKEEYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL NR ++ I ED LR+LR RF A Y ++ A+
Sbjct: 114 QDLENRILRHI---SPAFSEDPLRVLRVARFAARYHSLGFKIASETLALMAELAQSGELQ 170
Query: 203 ERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
I K L KNP ++ G +F ++ + E
Sbjct: 171 HLTAERIWLETEKALNEKNPEIYFETLHKTGALSVLFSEIDALYGVPNPVKHHPEVDSFI 230
Query: 259 KIDSLLRFIVLI----SWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEI 313
+L+ V + +K ++ A L + + I + + +
Sbjct: 231 HTMLVLKQAVNLTENNPILNKSAVRFAAICHDLGKALTPQNILPHHYGHEQAGIKPTRSL 290
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
K + +A+L H + ++ + + W+KP
Sbjct: 291 CKRLKVPSYFQELAELTCEFHTHIHKAFELRAETVITLFNRFDVWRKPQ 339
>gi|170723965|ref|YP_001751653.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas putida W619]
gi|226702076|sp|B1JDY1|CCA_PSEPW RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|169761968|gb|ACA75284.1| Polynucleotide adenylyltransferase region [Pseudomonas putida W619]
Length = 370
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 74/370 (20%), Positives = 127/370 (34%), Gaps = 26/370 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ V DID + + P + + K
Sbjct: 2 QIYKVGGAVRDRLLGRPVSDIDWLVVGASVEEMHAK------GFRPVGADF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D +RRD TINA+ D QG V+D G
Sbjct: 54 TGEEYALARTERKSGRGYGGFTFHASPEVTLEEDLIRRDLTINAMAEDDQGNVLDPFHGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL R ++ + ED LR+LR RF A Y + +
Sbjct: 114 ADLEQRLLRHV---SPAFAEDPLRVLRVARFAARYAPLGFRVADETLELMKQIAASGELQ 170
Query: 203 ----ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
ER W EI + L P I + + K++ +++ + + Q E
Sbjct: 171 ALTAERSWKEIERALMEDEPQVFINVLSDCAALKQLMPELE----GDAAALAALTQAAEH 226
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+R+ L+ SI ++ ++F PRE + + C N E + +
Sbjct: 227 HQPLHIRWACLLHNLKPASIKALNQRFKAPRECQELAMLVGECASNGHRALQLEPEDMLA 286
Query: 319 LYGD-KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
L V + + + + + + + +V+ G+
Sbjct: 287 LLQKFDVYRRPQRFEDFISVCQMVARGSGQAYPQADYLRAAAAAARAVEAKPLVEAGLT- 345
Query: 378 GKKVGNILVH 387
G+ +G L H
Sbjct: 346 GQALGEALRH 355
>gi|269967431|ref|ZP_06181491.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio
alginolyticus 40B]
gi|269828019|gb|EEZ82293.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio
alginolyticus 40B]
Length = 406
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 58/344 (16%), Positives = 115/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + D D P+ ++ K P + K
Sbjct: 2 QVYLVGGAVRDKLLGIDSYDNDWVVVGATPEMMLSQGYTAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D +RRD TINA+ + G + D GG
Sbjct: 54 SKEEHALARTERKSGSGYTGFECFFDQNVTLEEDLIRRDLTINAMAMESDGTIHDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL ++ ++ + +ED LR+LR RF A + N +
Sbjct: 114 QDLNDKLLRHV---SDAFIEDPLRVLRVARFAAKLADLNFTVADETMRLMRHMAESGELS 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E +K L P + + + G + ++ + + E
Sbjct: 171 TLTPERVWQEWHKSLSTPRPDIFLSVLRDCGALTVVLPEIDALFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ +S + + + I ++ +
Sbjct: 231 HTLMVAEQAAKLSNSLPVRFAAQVHDLGKG-VTPESEWPSHKMHCHTGLKLIKKLCERVR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + + I+++L+ + W+KP
Sbjct: 290 VPNEFRDLALMVCEQHSNTHRAAELKPQTIIKILNKLDVWRKPE 333
>gi|161486663|ref|NP_933364.2| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Vibrio
vulnificus YJ016]
gi|73619901|sp|Q7M7K5|CCA_VIBVY RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
Length = 407
Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 56/344 (16%), Positives = 112/344 (32%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + V D D ++++ P + + K
Sbjct: 2 EVYLVGGAVRDKLLGIPVYDQDWVVVGATAEQML------NAGYSPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D QG + D GG
Sbjct: 54 TKQEYALARTERKTGQGYKGFECFFSPDVTLEEDLLRRDLTINAIAMDSQGVLYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL++R ++ + +ED LR+LR RF A +
Sbjct: 114 QDLQDRILRHV---SEAFVEDPLRVLRVARFAAKLAPLGFRVADETMQLMQSIVASGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
++ER+W E +K L P + + G + ++ + + E
Sbjct: 171 ALTAERVWQEWHKSLLTPAPQQFLAVLRQCGALAVVLPEIDALFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ +S + + + I ++ +
Sbjct: 231 HTLLVAEQAAKLSSSAVVRFAAQVHDLGKG-VTPPSEWPSHKMHCHTGLKLIKQLCERVR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + + ++++ + + W+K
Sbjct: 290 VPNEFRDLALMVCEQHSNIHRAAELKPQTMVKIFNKLDVWRKAE 333
>gi|254291646|ref|ZP_04962434.1| tRNA nucleotidyltransferase [Vibrio cholerae AM-19226]
gi|150422418|gb|EDN14377.1| tRNA nucleotidyltransferase [Vibrio cholerae AM-19226]
Length = 403
Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 115/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P +
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPN 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D G++ID GG
Sbjct: 54 SKEEHALARTERKTGVGYTGFACHYAPDVTLEDDLLRRDLTINAMAQDNSGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL + ++ + +ED LR+LR RF A + AK +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + + G + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSTHHPEMFLQVLRDCGALAVVLPEIDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I + +
Sbjct: 231 HTLMVAKQAAQLSDSLPVRFAAQVHDLGKG-VTPPSEWPSHKLHCHTGLNIIESLCERIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + L+VL + W+KP
Sbjct: 290 VPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333
>gi|329904551|ref|ZP_08273857.1| tRNA nucleotidyltransferase [Oxalobacteraceae bacterium IMCC9480]
gi|327547911|gb|EGF32661.1| tRNA nucleotidyltransferase [Oxalobacteraceae bacterium IMCC9480]
Length = 384
Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 61/285 (21%), Positives = 110/285 (38%), Gaps = 20/285 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD+L+ L V+D D + P+ ++ + P + + K
Sbjct: 2 QIYTVGGAVRDALLGLPVKDRDYVVVGATPEAMVAL------GYTPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFT----RDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y VF + D RRD TINA+ G ++D GG
Sbjct: 54 THEEYALARTERKTAPGYRGFVFHAAGDVTLEQDLARRDLTINAIAQAGDGALVDPYGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKGLKIL 200
DL + + + ED +RILR RF A + ++ + + ++ A + L
Sbjct: 114 ADLAAKLFRHV---SAAFAEDPVRILRVARFAARFTGFSVAPETNLLMQTMVASGEVDAL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEW 258
ER+W E+ + L + P I + + G + ++ L L Q
Sbjct: 171 VPERVWQELARGLMEQQPSRMIDVLRDCGALARLLPELDAAGPLLPLLDQAAAQGLALPL 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
++ LL + + ++A +P + R +
Sbjct: 231 RVAVLLHDPAGDPTSRSQRVDAIASLLKMPADCRDLAVMVTRDYH 275
>gi|270158080|ref|ZP_06186737.1| multifunctional CCA protein [Legionella longbeachae D-4968]
gi|289163654|ref|YP_003453792.1| tRNA nucleotidyltransferase [Legionella longbeachae NSW150]
gi|269990105|gb|EEZ96359.1| multifunctional CCA protein [Legionella longbeachae D-4968]
gi|288856827|emb|CBJ10638.1| tRNA nucleotidyltransferase [Legionella longbeachae NSW150]
Length = 410
Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 71/346 (20%), Positives = 135/346 (39%), Gaps = 23/346 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+NL V++ D PD +++ K + + +
Sbjct: 2 KVYLVGGAVRDQLLNLPVKERDWVVVGSSPDELLQK------KFRQVGRDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D RRD TINA+ D+QG++ID G
Sbjct: 54 TNEEYALARTERKSAPGYYGFSCDFSKQVTLEEDLARRDLTINAIAMDEQGQLIDPYNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198
DL+ R ++ + +ED +R+LR RF A + ++ L+ ++ + L
Sbjct: 114 QDLKRRLLRHV---SPAFVEDPVRVLRVARFAARFHYLGFKLADETRSLMYTMVRRGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L +ER+W E + LE KNP I + + G + I +++ L + +
Sbjct: 171 HLVAERVWQEWQQSLEEKNPEQFIWTLRSCGALRVILPEIEA--LFGIPNPYRYHHEVDS 228
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-FNCNFNQKTLSIPEIKKLF 317
+ SL ++ + I A L + + + + + I +
Sbjct: 229 GVHSLFVVQAAVALTNDPIIRFAALVHDLGKALSPMDNWPSHHGHEERGVAIIQSLCTRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
+ D +A + L + L I+++L +++
Sbjct: 289 RIPNDYRNLAVMVSRFHLTIHRLFELQAATIVKLLEQSDAFRRSKL 334
>gi|167755024|ref|ZP_02427151.1| hypothetical protein CLORAM_00528 [Clostridium ramosum DSM 1402]
gi|167705074|gb|EDS19653.1| hypothetical protein CLORAM_00528 [Clostridium ramosum DSM 1402]
Length = 451
Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 76/450 (16%), Positives = 153/450 (34%), Gaps = 58/450 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLM-NL-SVQDIDIATTILPDRVMRIFSKTRY 68
I +++ ++ +VGG VRD L+ N D+D+ L +
Sbjct: 7 FSPLAKKIFKDIDEHHGRAFLVGGIVRDMLIYNRVDYHDVDVEVYGLSVDELEELLANYG 66
Query: 69 KVIPTSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFT 123
V S+G +K+ + D R+++ T + T + K + RRD T
Sbjct: 67 NVNSIGKSFGILKLDVLPNF--DFALPRTEIKTGESHQDFDVTVNQNLDLKVAASRRDLT 124
Query: 124 INALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH-YGEKN 181
INAL + + K+ D+ G D+ RT++ + +ED LR+LR +F +
Sbjct: 125 INALMYEIKTGKIYDFFHGQEDIEKRTLRMVS--ETTFIEDPLRVLRTAQFASRLDFCIE 182
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI------- 234
+ + + K L LS ER++ E +KLL ++ P + +
Sbjct: 183 TATKLMCKKMVQNKSLDKLSKERVFQEYSKLLLSQQPSIGLTFLKEIKALWPCLDVLSKT 242
Query: 235 ------FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK---- 284
+ L + A + + L+ K ++ +
Sbjct: 243 MQRLDYHPEGDVWRHTLLVTDLAALCCHKTSNPLGFMWSALLHDIGKATVTTKDGHAPGH 302
Query: 285 --------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL---YGDKVMIA 327
F ++++ ++ + + + + E K Y G ++
Sbjct: 303 NEAGVKIFNQEVKAFIPDKQLQKYIKTMIFYHMHLMNMVRNEAKDYSYFKILKGIDGIVT 362
Query: 328 KLKIFLALHYNNL-THQDTCFILQVLSDIIHWK------KPLFP-LTGDDVVKYGIPPGK 379
+ L + L ++D + ++ K K P + G D+ GI P
Sbjct: 363 IEDLILITKCDKLGRYKDEHENINRFDYVMKEKMARLSTKAQLPLVDGYDLKALGIEPSS 422
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
K +L + S+ + ++
Sbjct: 423 KYSELLDWAYDLQLRGH---SKAAILKMVE 449
>gi|229514072|ref|ZP_04403534.1| tRNA nucleotidyltransferase [Vibrio cholerae TMA 21]
gi|229349253|gb|EEO14210.1| tRNA nucleotidyltransferase [Vibrio cholerae TMA 21]
Length = 403
Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 115/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P +
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPN 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D G++ID GG
Sbjct: 54 SKEEHALARTERKTGVGYTGFACHYAPDVTLEDDLLRRDLTINAMAQDNSGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL + ++ + +ED LR+LR RF A + AK +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + + G + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSTHHPEMFLQVLRDCGALAVVLPEIDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I + +
Sbjct: 231 HTLMVAKQAAQLSDSLLVRFAAQVHDLGKG-VTPPSEWPRHKLHCHTGLNIIESLCERIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + L+VL + W+KP
Sbjct: 290 VPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333
>gi|126695665|ref|YP_001090551.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. MIT 9301]
gi|126542708|gb|ABO16950.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. MIT 9301]
Length = 415
Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 57/389 (14%), Positives = 128/389 (32%), Gaps = 24/389 (6%)
Query: 23 NKGEDKSCIVGGAVRDSLMNL-------SVQDIDIATTILPDRVMRIFSKTRYKV----I 71
+ K VGG +RD L++ DID+ + + K V I
Sbjct: 29 SNKNTKVAFVGGYLRDLLISKFHKKSFSKPVDIDLVIEGSSISLAKFIKKNIVNVDLCLI 88
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
Y T++I DI R ++ + V + D RRDF+IN++ +
Sbjct: 89 KEFNLYNTVEININDYKIDIACARKEIYSAPGLNPTVNKSTIEEDLKRRDFSINSIAFEV 148
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
K I + G + + I +D R++R ++ + ++ +
Sbjct: 149 STKKIYDLYGGISDIKSK-RLNLLHSNSISDDPSRLIRCAKYASRLDFNISNNSLKQSQE 207
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
++ S L + + + + I + + + L++ I+
Sbjct: 208 TVRQWPWKSSETHQKVIYPPALGIRIRMELAEICKHDNLTNVISIIHKWEIISILNENIK 267
Query: 252 AEQVFEWKIDSLLR---FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN---FNQ 305
++ F ++ + + +L +D + + ++F + L + N
Sbjct: 268 VDKRFLRGLNWIKKVKGNHMLYLLKDSEDLKKACQRFLVNNSEIKILEDYLNIKKILNTN 327
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
K + + + + + L + + L + I K
Sbjct: 328 KKNFNHFSPSSWTEFIESRNLNDETVKLLICDGGPYWRKLFRWLFIYKFIKSKK------ 381
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
G+ + K G PG+++G + + I+
Sbjct: 382 DGETLKKEGWEPGQEMGKEIKRLRYLEID 410
>gi|75758964|ref|ZP_00739074.1| tRNA nucleotidyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74493565|gb|EAO56671.1| tRNA nucleotidyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 510
Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/256 (20%), Positives = 93/256 (36%), Gaps = 13/256 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR-VMRIFSKTRYKVIP 72
+L I+ L K +VGGAVRD L+++ +D D T + +F +
Sbjct: 5 ELTKIVETLKTCNAKVYLVGGAVRDLLLDIVPKDKDYCVTGISQEGFESLFPTAMLQ--- 61
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALY 128
+ ++ + ++ R + + V + D RRD TIN++
Sbjct: 62 -GKDFPVYRMDIDGELCEVALARKERKVSEGHNGFVIYASPDITIEDDLARRDITINSMA 120
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ + + + I ED LR+ R RF A YG I+
Sbjct: 121 I--DLETNKLIDPFYGELDLRTETIRATTEAFCEDPLRVYRAARFAAEYGFF-IEYKTST 177
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ K L L ER+ E K A+ P + + + F ++ +S + +
Sbjct: 178 MMNQLKSELLSLPIERVLEETKKAFMARTPSRFFHALKSANVLDVHFPEIDCLSELEQNL 237
Query: 249 VIEAE-QVFEWKIDSL 263
+ E VFE + +
Sbjct: 238 MYHPEGNVFEHTMQVI 253
>gi|121606357|ref|YP_983686.1| metal dependent phosphohydrolase [Polaromonas naphthalenivorans
CJ2]
gi|166233868|sp|A1VSY7|CCA_POLNA RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|120595326|gb|ABM38765.1| metal dependent phosphohydrolase [Polaromonas naphthalenivorans
CJ2]
Length = 424
Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 59/354 (16%), Positives = 112/354 (31%), Gaps = 31/354 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L V D D P+ + T +P + + +
Sbjct: 2 KIYMVGGAVRDKLLGLPVTDHDWVVVGATPEAL------TAQGFLPVGKDF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYAD---------QQG 133
+ R++ + Y + D RRD TIN++ A +
Sbjct: 54 TREEYALARTERNSARGYRGFEVYAAPEVTLEQDLARRDLTINSIAAPAHPDSAKGLFEP 113
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
V R+ K + ED +RILR RF A + + +I + L +
Sbjct: 114 DFDALVDPYGGQRDLQAKVLRHVTDAFREDPVRILRLARFAARFADFSIAPETLAMMWEM 173
Query: 194 KK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ L ER+W E+ + L P + G + + +V+ + S
Sbjct: 174 VTDGEVDGLVPERVWQELARGLMEDKPSRMFDALRACGALQHLLPEVERLWGVAQSAQYH 233
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E + +L + + + + S
Sbjct: 234 PEIDTGIHLMMVLDMAAQLGAPLPVRFACLCHDLGKG----TTPADVLPRHIGHEERSAK 289
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362
+K + ++ +A + N+ ++++L ++KP
Sbjct: 290 LLKDVCQRLRVPSECREIADVVAREHGNIHRSGEFSPAAVVRLLERCDAFRKPR 343
>gi|146309035|ref|YP_001189500.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas mendocina ymp]
gi|166233871|sp|A4XZK2|CCA_PSEMY RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|145577236|gb|ABP86768.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Pseudomonas mendocina ymp]
Length = 410
Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 67/345 (19%), Positives = 126/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ V ++D ++++ + P + + +
Sbjct: 2 QIYKVGGAVRDRLLGRPVSEVDWVVVGASAEQMLEL------GYRPVGADF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D +RRD ++NA+ D+QGK+ID GG
Sbjct: 54 TGEEYALARTERKSGRGYGGFTFHASPEVTLEEDLIRRDLSVNAMAEDEQGKLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + + L
Sbjct: 114 QDLAARILRHV---SPAFAEDPLRVLRVARFAARYAPLGFHVADETLGLMRQLAESGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER W EI++ L P I + + G + +V ++ + E
Sbjct: 171 HLTAERSWKEISRALMEPRPDVFIQVLRDCGALAALLPEVDDLFGVPQPEAHHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEIKKLF 317
+ S+LR S+ + + + + + ++ I I +
Sbjct: 231 HVLSVLRQCAE--HDQPLSVRWACLLHDVGKGLTPEAEWPRHIAHEHKGLRLIQAINERC 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D +A L H + +L++L +++P
Sbjct: 289 KAPRDCAELAMLVGEFHTHGHRALELRPSTLLELLQRFDVFRRPQ 333
>gi|332527837|ref|ZP_08403875.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2]
gi|332112232|gb|EGJ12208.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2]
Length = 408
Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 57/343 (16%), Positives = 115/343 (33%), Gaps = 25/343 (7%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD+L+ L D D P ++ P + + +
Sbjct: 6 YVVGGAVRDALLGLPASDRDWVVVGSTPQELVAA------GFRPVGRDF--PVFLHPETG 57
Query: 89 FDITTLRSDLITDGRYA----KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
++ R++ + Y + + D LRRD TINA+ + G ++D GG D
Sbjct: 58 EEVALARTERKSAPGYRGFTIHADPSVTLEDDLLRRDLTINAIARAEDGTLVDPHGGQRD 117
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK--AKKGLKILSS 202
L+ R + + +ED +R+LR R A + + + + + A + L
Sbjct: 118 LQARIFRHV---SDAFVEDPVRLLRLARLAARFTDFTVAPETEALLERLVADGEVDALVP 174
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
ER+W E+++ L P + G + ++ + E
Sbjct: 175 ERVWQELSRGLMEARPSRMFEILRRCGALARLLPELDRLWGVPQPPEHHPEVDCGVHTML 234
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
+L + + + + S + + +
Sbjct: 235 VLDMAARLQAP----LTVRWACLMHDLGKGTTPADVLPRHLGHEGRSATLARAVADRWRV 290
Query: 323 KVMIAKLKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKPL 362
+L +A + NL + I+++L +++P
Sbjct: 291 PNPCRELADLVAREHGNLHRSNEFGAAAIVRLLERCDAFRRPE 333
>gi|228904710|ref|ZP_04068764.1| TRNA nucleotidyltransferase [Bacillus thuringiensis IBL 4222]
gi|228854724|gb|EEM99328.1| TRNA nucleotidyltransferase [Bacillus thuringiensis IBL 4222]
Length = 507
Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/256 (20%), Positives = 93/256 (36%), Gaps = 13/256 (5%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR-VMRIFSKTRYKVIP 72
+L I+ L K +VGGAVRD L+++ +D D T + +F +
Sbjct: 2 ELTKIVETLKTCNAKVYLVGGAVRDLLLDIVPKDKDYCVTGISQEGFESLFPTAMLQ--- 58
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALY 128
+ ++ + ++ R + + V + D RRD TIN++
Sbjct: 59 -GKDFPVYRMDIDGELCEVALARKERKVSEGHNGFVIYASPDITIEDDLARRDITINSMA 117
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ + + + I ED LR+ R RF A YG I+
Sbjct: 118 I--DLETNKLIDPFYGELDLRTETIRATTEAFCEDPLRVYRAARFAAEYGFF-IEYKTST 174
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ K L L ER+ E K A+ P + + + F ++ +S + +
Sbjct: 175 MMNQLKSELLSLPIERVLEETKKAFMARTPSRFFHALKSANVLDVHFPEIDCLSELEQNL 234
Query: 249 VIEAE-QVFEWKIDSL 263
+ E VFE + +
Sbjct: 235 MYHPEGNVFEHTMQVI 250
>gi|121730098|ref|ZP_01682501.1| tRNA nucleotidyltransferase [Vibrio cholerae V52]
gi|147674076|ref|YP_001217948.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Vibrio
cholerae O395]
gi|262167278|ref|ZP_06034988.1| tRNA nucleotidyltransferase [Vibrio cholerae RC27]
gi|172047582|sp|A5F5I2|CCA_VIBC3 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|121628155|gb|EAX60685.1| tRNA nucleotidyltransferase [Vibrio cholerae V52]
gi|146315959|gb|ABQ20498.1| tRNA nucleotidyltransferase [Vibrio cholerae O395]
gi|227014338|gb|ACP10548.1| tRNA nucleotidyltransferase [Vibrio cholerae O395]
gi|262024253|gb|EEY42944.1| tRNA nucleotidyltransferase [Vibrio cholerae RC27]
Length = 403
Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 115/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P +
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPN 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D G++ID GG
Sbjct: 54 SKEEHALARTERKTGVGYTGFACHYAPDVSLEDDLLRRDLTINAMAQDNSGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL + ++ + +ED LR+LR RF A + AK +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIVQSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + + G + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSTNHPEVFLQVLRDCGALAVVLPEIDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I + +
Sbjct: 231 HTLMVAKQAAQLSDSLPVRFAAQVHDLGKG-VTPPSEWPSHKLHCHTGLNIIESLCERIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + L+VL + W+KP
Sbjct: 290 VPNEFRDLALAVCAQHSNIHRADELKPTTKLKVLGLLDVWRKPE 333
>gi|320157465|ref|YP_004189844.1| tRNA nucleotidyltransferase [Vibrio vulnificus MO6-24/O]
gi|319932777|gb|ADV87641.1| tRNA nucleotidyltransferase [Vibrio vulnificus MO6-24/O]
Length = 407
Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 56/344 (16%), Positives = 112/344 (32%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + V D D ++++ P + + K
Sbjct: 2 EVYLVGGAVRDKLLGIPVYDHDWVVVGATAEQML------NAGYSPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D QG + D GG
Sbjct: 54 TKQEYALARTERKTGQGYKGFECFFSPDVTLEEDLLRRDLTINAIAMDSQGALYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL++R ++ + +ED LR+LR RF A +
Sbjct: 114 QDLQDRILRHV---SEAFVEDPLRVLRVARFAAKLAPLGFRVADETLQLMQSIAASGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
++ER+W E +K L P + + G + ++ + + E
Sbjct: 171 ALTAERVWQEWHKSLLTPAPQQFLAVLRQCGALAVVLPEIDALFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ +S + + + I ++ +
Sbjct: 231 HTLLVAEQAAKLSSSAVVRFAAQVHDLGKG-VTPPSEWPSHKMHCHTGLKLIKQLCERVR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + + ++++ + + W+K
Sbjct: 290 VPNEFRDLALMVCEQHSNIHRAAELKPQTMVKIFNKLDVWRKAE 333
>gi|262170607|ref|ZP_06038285.1| tRNA nucleotidyltransferase [Vibrio mimicus MB-451]
gi|261891683|gb|EEY37669.1| tRNA nucleotidyltransferase [Vibrio mimicus MB-451]
Length = 403
Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 67/346 (19%), Positives = 118/346 (34%), Gaps = 25/346 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P + K
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D+ G+VID GG
Sbjct: 54 TKEEHALARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDELGQVIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL + ++ + +ED LR+LR RF A + A
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLAHLGFTVAEETMQLMADIAQSGELG 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + + G + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSTNHPEVFLQVLRDCGALAVVLPELDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLP--REIRYFLISFFNCNFNQKTLSIPEIKKL 316
+ + L+S + + + S+ + ++
Sbjct: 231 HTLMVTKQAALLSDSLPVRFSAQVHDLGKGVTPPSEWPSHKLHCHTGLKIIESLCDRIRV 290
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +A + + L+VL + W+KP
Sbjct: 291 PNEFRD---LALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333
>gi|145630989|ref|ZP_01786765.1| tRNA nucleotidyltransferase [Haemophilus influenzae R3021]
gi|144983456|gb|EDJ90932.1| tRNA nucleotidyltransferase [Haemophilus influenzae R3021]
Length = 261
Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 62/268 (23%), Positives = 98/268 (36%), Gaps = 21/268 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L V+D D I P ++ + + K P + K
Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVF--------LNPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ + G++ID GG
Sbjct: 54 TKEEYALARTERKAGAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL NR ++ I ED LR+LR RF A Y S+ A+
Sbjct: 114 QDLENRILRHI---SPAFSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELAQSGELQ 170
Query: 203 ERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ K L KNP ++ G +F ++ + E
Sbjct: 171 HLTAERVWLETEKALNEKNPEIYFETLHKTGALSVLFPEIDALYGVPNPVKHHPEVDSFI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFS 286
+L+ V + ++ ++ F
Sbjct: 231 HTMLVLKQTVHL-TENTPNLQKKCGPFC 257
>gi|269137819|ref|YP_003294519.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda
EIB202]
gi|267983479|gb|ACY83308.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda
EIB202]
gi|304557874|gb|ADM40538.1| tRNA nucleotidyltransferase [Edwardsiella tarda FL6-60]
Length = 414
Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 71/345 (20%), Positives = 126/345 (36%), Gaps = 23/345 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD + L QD D P ++ + K P + +
Sbjct: 2 KTYLVGGAVRDKYLQLPTQDRDWVVVGATPQALLAQGYQQVGKDFPVF--------LHPR 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y + D LRRD TINA+ D +G++ID GGL
Sbjct: 54 SKEEYALARTERKAGQGYTGFSTYFAPDVTLEQDLLRRDLTINAMAEDDEGQLIDPYGGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DLR R ++ + +ED LR+LR RF A + + + + L
Sbjct: 114 QDLRQRQLRHV---SEAFVEDPLRVLRVARFAARFAPLGFQVAAPTLALMQRMSQRGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E K L P + + G +F ++ L + + +
Sbjct: 171 HLTPERVWLETEKALSGPAPQVYFQVLRDCGALAVLFPEIDR--LFGVPAPAQWHPEIDT 228
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI-PEIKKLF 317
I +LL + D ++ A + + + + + + E+ +
Sbjct: 229 GIHTLLTLAMASHLSDDVAVRFAALTHDVGKGLTNPNFWPHHHGHGPAGVRLVREMCQRL 288
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A L + + +L++L I W++P
Sbjct: 289 RTPNPVRDLALLVAEYHDLIHTVERLRPATLLKLLDTIDVWRRPQ 333
>gi|262190105|ref|ZP_06048394.1| tRNA nucleotidyltransferase [Vibrio cholerae CT 5369-93]
gi|262034009|gb|EEY52460.1| tRNA nucleotidyltransferase [Vibrio cholerae CT 5369-93]
Length = 403
Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 116/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P + K
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D G++ID GG
Sbjct: 54 SKEEHALARTERKTGVGYTGFACHYAPDVTLEDDLLRRDLTINAMAQDGSGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL + ++ + +ED LR+LR RF A + AK +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + + G + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSTHHPEVFLQVLRDCGALAVVLPEIDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I + +
Sbjct: 231 HTLMVAKQAAQLSDSLLVRFAAQVHDLGKG-VTPPSEWPSHKLHCHTGLNIIESLCERIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + L+VL + W+KP
Sbjct: 290 VPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333
>gi|157374223|ref|YP_001472823.1| metal dependent phosphohydrolase [Shewanella sediminis HAW-EB3]
gi|189081880|sp|A8FS72|CCA_SHESH RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|157316597|gb|ABV35695.1| metal dependent phosphohydrolase [Shewanella sediminis HAW-EB3]
Length = 413
Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 59/342 (17%), Positives = 122/342 (35%), Gaps = 21/342 (6%)
Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD+L+NL+V+D D + P +++ + + K P + +
Sbjct: 4 YLVGGAVRDNLLNLTVKDRDHMVVGATPQQMLEMGYRQVGKDFPVF--------LHPETG 55
Query: 89 FDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ G + D LRRD TINA+ D++G++ D GG++D
Sbjct: 56 QEYALARTERKTGVGYGGFSCHASPDVTLEEDLLRRDLTINAIAQDEEGQLYDPYGGVDD 115
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
+ NR ++ + +ED LR+LR RF A + + ++ +
Sbjct: 116 INNRVLRHV---SDAFVEDPLRVLRVARFAARFHRQGFTIADETLAMMTQISHSGELEAL 172
Query: 205 IWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ K L +P I + +F ++ + E
Sbjct: 173 TAERVFLELDKALATDSPQVFIHVLNQCDALAILFPEIHALFGVPQPVKWHPEIDTGIHT 232
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+L + + ++ + + + + + I + +
Sbjct: 233 LMVLEQAAKLCDDNSVRFAALVHDLGKALSPKEH-LPKHHGHGQKGLALIKVLCARVRVP 291
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D +A L L + + + ++++ W+KP
Sbjct: 292 NDYRDLALLVSDLHQNIHQIEELRPDTLVKIFDKADLWRKPE 333
>gi|299532637|ref|ZP_07046025.1| metal dependent phosphohydrolase [Comamonas testosteroni S44]
gi|298719272|gb|EFI60241.1| metal dependent phosphohydrolase [Comamonas testosteroni S44]
Length = 420
Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 60/315 (19%), Positives = 107/315 (33%), Gaps = 25/315 (7%)
Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
K VGGAVRD+L+ L V D D P+++ +P + +
Sbjct: 4 FKVFKVGGAVRDALLGLPVNDTDWVVVGATPEQMSAR------GFVPVGRDF--PVFLHP 55
Query: 86 KKYFDITTLRSDLIT-DGRYAKVVFT---RDWKADSLRRDFTINALYADQQGK------- 134
+ + + R++ G VV T + D RRD TIN++ A
Sbjct: 56 RTHEEYALARTERKNGMGYRGFVVHTAADVTLEEDLARRDLTINSIAAPADWTGNGDLED 115
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
++D G DL+NR ++ + DA ED +RILR RF A + + ++ + + +
Sbjct: 116 LVDPYHGQQDLKNRVLRHVTDA---FREDPVRILRLARFAARFTDFSVAPETMELMREMV 172
Query: 195 --KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ L ER+W EI++ L P + G + ++ ++
Sbjct: 173 AAGEVDALVPERVWQEISRGLMEAQPSRMFEILRECGALVRLLPELDKLWGVPQRAEYHP 232
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
E +L + + F L L +
Sbjct: 233 EIDCGVHAMMVLDMSARLQAPLSVRFACLCHDFGKGSTPADVLPRHIGHEQRSARLLLQV 292
Query: 313 IKKLFYLYGDKVMIA 327
++ K +
Sbjct: 293 CERWRVPNDCKELAE 307
>gi|190575848|ref|YP_001973693.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Stenotrophomonas maltophilia K279a]
gi|226702088|sp|B2FUP5|CCA_STRMK RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|190013770|emb|CAQ47405.1| putative 2 tRNA nucleotidyltransferase [Stenotrophomonas
maltophilia K279a]
Length = 406
Score = 97.2 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 61/409 (14%), Positives = 125/409 (30%), Gaps = 59/409 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ D D P ++ + P + K
Sbjct: 2 KIYLVGGAVRDRLLQRPAGDHDWVVVGATPAQMEAQGYTAVGRDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKV-IDYVGG 141
+ R++ + Y + D RRDFTINA+ D++ +D GG
Sbjct: 54 TGEEYALARTERKSGRGYRGFVVDADPGVTLEEDLQRRDFTINAIACDEETGTLVDPYGG 113
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL- 200
+ D+ R ++ +G A +ED LR+LR RF A + ++ +
Sbjct: 114 VRDIEQRVLRHVGPA---FVEDPLRVLRAARFMARFAPLGFTVAEETMALMREIAASGEL 170
Query: 201 ---SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
ER+W E+ K L ++ P + +++ I +++ + E
Sbjct: 171 DALVPERVWQELRKALVSERPSAFLRTLHDAHALGPILPELEALYGVPQRAEFHPEVDTG 230
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ + ++ D + + + + +
Sbjct: 231 IHQEMVSDMAAKLAPGDDLVGFAALTHDLGKGLTPPEEWPRHIMHEQRGIKPLKALCARL 290
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL--------------- 362
+ + +A+ L+ + + +L++L ++P
Sbjct: 291 KIPAEHQQLAEAVCREHLNVHRIDELRDATVLELLGRCDALRRPERVARIALCCEADKRG 350
Query: 363 ----------------------FPLTGDDVVKYGIPPGKKVGNILVHCK 389
+ D+ + G +G L +
Sbjct: 351 RLGFEDADYPQGETLKRLHQAALSVQARDLDTTHLK-GPAIGEALAKAR 398
>gi|325284627|ref|YP_004264090.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Deinococcus proteolyticus MRP]
gi|324316116|gb|ADY27230.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Deinococcus proteolyticus MRP]
Length = 500
Score = 97.2 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 77/456 (16%), Positives = 135/456 (29%), Gaps = 63/456 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT---TILPDRVMRIFSK--TR 67
L + L + +VGGAVRD L + D+D+ + PD + + +
Sbjct: 20 PTLRELCGALEGSGCELYLVGGAVRDRLRGVVGSDLDLLVRHPQLDPDALEDLLRRRLAP 79
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS--------LR 119
V+ S+ +K+ ++ D+ + A W +D R
Sbjct: 80 APVLGVGASFRVLKVKWAGEWLDLALPSRAALDAATGAVTGTGPGWLSDPRLPLTDDLAR 139
Query: 120 RDFTINALYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
RDFT+NAL + D GG DL ++ G A R+ ED LR+LR RF A
Sbjct: 140 RDFTVNALALRLCPTGTDDLADPFGGRADLEAGRLRASGSAAERLAEDPLRLLRAARFAA 199
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ + ++ + ++ ER+W E KL + + + G +
Sbjct: 200 QGLTPDAELTAAARALAPRLAE--VAPERLWREWLKLFAGPHSAQGLRWLAEVGALGVLV 257
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKI-----------DSLLRFIVLISWQDKKSILSMAKK 284
E+ E V + + L R K ++ +
Sbjct: 258 PAWTEVDGLTQHNPHHRETVSDHLLTVVAELDRMGAAPLTRQAGFFHDIGKGRTRTLEQG 317
Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI------------------ 326
Y Q + + G V +
Sbjct: 318 PQGLHGHFYGHERVGAELTRQSLRRLRADSQHVRDLGRLVELHMRPGQAGSPAAARRLAA 377
Query: 327 ------AKLKIFLALHYNNLTHQDTCFILQVLSDIIH--------WKKPLFPLTGDDVVK 372
L A +D I I + + L+G D+
Sbjct: 378 AAGDLLDPLLDLYAADRLAHVGEDPAQIQARQDFIRAAAADLPRTFSQHDLALSGHDLRT 437
Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
G+ P + +G + ++ + L LL
Sbjct: 438 LGLAP-QDIGPVKRWLTEQVLEGRAPNESAALRDLL 472
>gi|289547935|ref|YP_003472923.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermocrinis albus DSM 14484]
gi|289181552|gb|ADC88796.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermocrinis albus DSM 14484]
Length = 506
Score = 97.2 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 80/471 (16%), Positives = 155/471 (32%), Gaps = 97/471 (20%)
Query: 29 SCIVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSKTRYKVIPTSISYG------T 79
+VGG VRD L+ V D+D+ T P ++ + ++ G
Sbjct: 36 CFVVGGWVRDRLLGEPVGYKIDVDLLVTCDPRKIAKDLAEAIGGTYFEFEKKGLLRRPTV 95
Query: 80 IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG------ 133
+I +I R K + + D L RDFT NA+
Sbjct: 96 ATVIL-----EIPPYRYRFDFSQIKGKDIEKALVE-DLLSRDFTANAMAVSLDDVLSIGA 149
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ D G+ DL ++ + + + ED +RILR R + D
Sbjct: 150 KQTIIYDPAHGVEDLEMGVLRPVSIKN--LEEDPVRILRGVRLSVEKD-LELTEDFYQFV 206
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-------- 242
++ K ++ S ERI E+ ++LE N A+ MY G+ +E+F D+
Sbjct: 207 LRKKHIIRKASPERITVELLRILELPNSARALREMYRLGLLQELFPDIARWKEVTTSHYS 266
Query: 243 --------LDQLSQVIEAEQVFEW----------------------KIDSLLRFIVLISW 272
+++ +V+E ++ F K+ ++ I
Sbjct: 267 LEKHMDLLWEEMDKVVEEKEKFLHAELLSQIGSKKFLGEFSDLAALKLAAIFHDIAKPHT 326
Query: 273 QDKKS---------------ILSMAKKFSLPREIRYFLISFFNCNFN---------QKTL 308
K + K + ++ F+ + + L
Sbjct: 327 FQMKDGKPTFYQHDQLGALLVKEYGKAYRWGEDLTRFVADLVTYHLRVFYLKESLKKGEL 386
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW------KKPL 362
+ K + G L ++ + ++ ++ + D+ H+ K
Sbjct: 387 TDRGRGKFWKECGHIAPWLFLHSIADARASHDSEEELHHLMDTIHDLTHFAMRSKTKPIK 446
Query: 363 FPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
LTG D+++ IPPG VG I ++ + +E + ++ +
Sbjct: 447 PLLTGHDIMELLSIPPGPLVGEIKRALEEAQLEGKVSTREEAID-FVKNYL 496
>gi|261253885|ref|ZP_05946458.1| tRNA nucleotidyltransferase [Vibrio orientalis CIP 102891]
gi|260937276|gb|EEX93265.1| tRNA nucleotidyltransferase [Vibrio orientalis CIP 102891]
Length = 425
Score = 97.2 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 65/342 (19%), Positives = 116/342 (33%), Gaps = 21/342 (6%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+N++V D D P+ ++ K P + K
Sbjct: 26 YLVGGAVRDQLLNINVYDKDWVVVGSTPEELLEKGYTAVGKDFPVF--------LHPKTK 77
Query: 89 FDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ G + D LRRD TINA+ D G ++D G D
Sbjct: 78 QEHALARTERKVGQGYTGFECYFAADVTLEEDLLRRDLTINAMAQDSDGNIVDPFNGQQD 137
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKIL 200
LR+R ++ + ED LR+LR RF A + I L L
Sbjct: 138 LRDRVLRHV---SDAFTEDPLRVLRVARFAAKLNHLGFTIAPETLNLMREIANSGELSHL 194
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ ER+W E +K L ++P + + + G + + ++ + + E
Sbjct: 195 TPERVWQEWHKSLSTQSPQIFLKVLRDCGALQVVLPELDALFGVPQPEKWHPEIDTGIHT 254
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+ +S + + + I + + +
Sbjct: 255 LLVAEQAARLSDSLPVRFAAQVHDLGKG-ITPESEWPSHKLHCHTGVKLIKTLCERVRIP 313
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A + + + L+VL+ W+KP
Sbjct: 314 NEFRDLALMVCEQHSNIHRAAELRPETKLKVLNKFDVWRKPE 355
>gi|251792112|ref|YP_003006832.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Aggregatibacter aphrophilus NJ8700]
gi|247533499|gb|ACS96745.1| multifunctional CCA protein [Aggregatibacter aphrophilus NJ8700]
Length = 423
Score = 97.2 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 65/350 (18%), Positives = 118/350 (33%), Gaps = 26/350 (7%)
Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
+ +VGGAVRD L+NL VQD D P ++ + + K P +
Sbjct: 6 FQIYLVGGAVRDQLLNLPVQDRDWVIVGATPQALLSLGYQQVGKDFPVF--------LHP 57
Query: 86 KKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141
+ + R++ G + D +RRD TINA+ D QG + D G
Sbjct: 58 QSKEEYALARTERKSGQGYTGFICDFSADITLEQDLIRRDLTINAMAQDLQGNLYDPYHG 117
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
+DL+ R ++ + +ED LR+LR RF A Y + + +
Sbjct: 118 ADDLKQRILRHV---SPAFVEDPLRVLRVARFAARYHHLGFTIEPETLQLMQTLTEQGEL 174
Query: 202 SERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
+ K L KNP + G +F ++ + E
Sbjct: 175 QHLTAERVWAETEKSLNEKNPEIYFETLRQIGALAVLFPELDALYGVPNPAKFHPEIDSF 234
Query: 258 WKIDSLLRFIVLISWQDKKS-----ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+L+ L+S Q ++ + + + +
Sbjct: 235 VHTMIVLQQATLLSEQVDCHKSAVRFAAICHDLGKAKTPKSNW-PHHHGHEKLGLAPTRN 293
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ K + +A+L H + + ++++ + W+KPL
Sbjct: 294 LCKRLKVPSYYQQLAELTCEYHTHIHKIFELRPETVVKLFNTFDVWRKPL 343
>gi|323703663|ref|ZP_08115305.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfotomaculum nigrificans DSM 574]
gi|323531378|gb|EGB21275.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfotomaculum nigrificans DSM 574]
Length = 472
Score = 97.2 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 67/476 (14%), Positives = 138/476 (28%), Gaps = 91/476 (19%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L + +VGGAVRD L L +D+D+A + R +
Sbjct: 5 LKMVAQQAADLGTDVYLVGGAVRDLLWGLRPRDLDLAVANGALDLARRMAD--------- 55
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-- 132
GT+ ++ ++ + D D + D RDFTINA+
Sbjct: 56 RHRGTVVVLDEQRQMARVVFKQDYQLD---FSPFKGAHIEGDLRARDFTINAMALHLNSL 112
Query: 133 -GKVIDYVGGLNDLRNRTIKFIG------------DAHHRILEDYLRILRFFRFFAHYGE 179
R+ + G + +L+D LR++R R A +
Sbjct: 113 CSSKNCTSPADQGWRSFLVDPTGGKRDLQLGLLQATGNEALLDDPLRVIRGIRLAAQFN- 171
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+I + +V + + ++ ++ ERIW E+ + L + + + M + L +
Sbjct: 172 LSITPETVVLMRQGARRIEQVAGERIWQELGQALTLPHVHHWVEFMDRELNLWQYLLPGR 231
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------------- 277
E V+ + + +++
Sbjct: 232 LRMEATEQNYYHVENVWRHCLRTFGCLEIVLKKYQFYHHLAGGATGPAVFKLAALLHDVG 291
Query: 278 -------------------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++A + L R +L++ + + +
Sbjct: 292 KPDTAKIRPDGRISFYGHAQAGVPYAEALADRLRLSGMERQYLVTLIRHHMQPLHYFLNK 351
Query: 313 IKK-----LFYLYGDKVMIAKLKIFLALHYNNLTHQDT-----------CFILQVLSDII 356
+ + + L + LA T + ++
Sbjct: 352 GYSDLNVFRLFRLLEGNFLDILILSLADVTATYTASERLSELTAYREYILKLIHRYEHEP 411
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ P L+G D++ G+P G VG L + I + ++ +L
Sbjct: 412 EFFHPAKLLSGKDLIALGVPEGPLVGKFLARLAEMQITGAVTDLHSAKQWVIAELK 467
>gi|70732944|ref|YP_262715.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas fluorescens Pf-5]
gi|123652489|sp|Q4K4W8|CCA_PSEF5 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|68347243|gb|AAY94849.1| tRNA nucleotidyltransferase [Pseudomonas fluorescens Pf-5]
Length = 409
Score = 97.2 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 74/422 (17%), Positives = 135/422 (31%), Gaps = 63/422 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ V DID + ++ P + + K
Sbjct: 2 RIYKVGGAVRDRLLGRPVTDIDWVVVGASAEEMLAK------GFRPVGADF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y+ F + D +RRD TINA+ D+QG++ D G
Sbjct: 54 SGEEYALARTERKSGRGYSGFTFHASPEVTLEEDLIRRDLTINAMAEDEQGRLTDPYNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y ++ L+ + L+
Sbjct: 114 KDLEERLLRHV---SPAFAEDPLRVLRVARFAARYAGLGFRVAPETLELMRELSESGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER W EI++ L P I + + G + ++ + V E
Sbjct: 171 ALTAERSWKEISRALMEDQPQVFIQVLRDCGALAVLMPEIDALFGVPQPAVHHPEIDTGA 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
S+L + Q + + I + + F
Sbjct: 231 HTLSVLL-QAALHQQPLSVRWACLLHDLGKGLTPEEEWPRHIGHERTGLELIKAVNERFK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGD 368
+ +A L H + +L++L +++P G
Sbjct: 290 APRECQELALLVGQYHTHGHKALELKASTLLELLQSFDVFRRPQRFEEFIAACEMDARGR 349
Query: 369 D---------------------------VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401
+++ G G ++G L ++ + +
Sbjct: 350 LGLESRPYPQADYLRGAAEAARKVAVQPLLEQGFK-GPQLGEALR-LERLKA---IKAYK 404
Query: 402 ED 403
E
Sbjct: 405 EQ 406
>gi|225469610|ref|XP_002263338.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 681
Score = 97.2 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 16/161 (9%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+L LL + ++ +VGG VRD ++N + +D D+ TT ++ + F + + +
Sbjct: 41 VLKLLQREGFEAYLVGGCVRDLILNKTPKDFDVITTAKLKQIKKRFRRAQI----VGRRF 96
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
++ + ++++ + G + V + DF
Sbjct: 97 PICRVHVKGSVIEVSSF-ETVAKHGEEKEKVSFSQMPSGCDESDF-----------NRWR 144
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
+ L ++ + A ED R+LR R A G
Sbjct: 145 NFANIFILVCSQLRTLIPAQLSFKEDCARMLRGLRIAARLG 185
>gi|329119874|ref|ZP_08248548.1| multifunctional CCA protein [Neisseria bacilliformis ATCC BAA-1200]
gi|327464030|gb|EGF10341.1| multifunctional CCA protein [Neisseria bacilliformis ATCC BAA-1200]
Length = 412
Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 67/340 (19%), Positives = 118/340 (34%), Gaps = 16/340 (4%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
++ +VGGAVRD+L+ L V+D D R YK P + +
Sbjct: 2 ETYLVGGAVRDALLGLEVKDRDWVVVGS---DARTLLSQGYK--PVGRDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ T Y+ + D +RRD TINA+ D G++ID GG
Sbjct: 55 REEFALARTERKTGKGYSGFSCYAAPDVTLEQDLIRRDLTINAMAQDADGRIIDPFGGQA 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-SS 202
DLR + ++ + ED +RILR RF A YG + + G
Sbjct: 115 DLRGKILRHV---SPAFAEDPVRILRTARFAARYGFAVAPETMSLMRGMVESGEARALVP 171
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
ER+W E+ + L +P I + G K +V + E
Sbjct: 172 ERVWKELARGLMEDHPERMIEVLRECGALKVALPEVDALFGVPQRADYHPEIDSGIHTLL 231
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
LR + + ++ R + + + + + +
Sbjct: 232 TLRRAAALGLTLPERYAALLHDLGKARTPAEI-LPRHHGHDLAGVEPVQAVNTRLRVPKA 290
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+ + +++ +L VL +++P
Sbjct: 291 CAELAESVCRWHIMLHSVKTLRGKTVLNVLQRTDAFRRPE 330
>gi|149911043|ref|ZP_01899671.1| putative tRNA nucleotidyltransferase [Moritella sp. PE36]
gi|149805869|gb|EDM65857.1| putative tRNA nucleotidyltransferase [Moritella sp. PE36]
Length = 386
Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 68/343 (19%), Positives = 122/343 (35%), Gaps = 38/343 (11%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L++L V+D D P ++ + K P +
Sbjct: 2 QIYLVGGAVRDKLLSLPVKDKDFVVVGATPAEMLAQGYQQVGKDFPVF--------LHPN 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D +RRD TINA+ D+ G VID +
Sbjct: 54 SKQEYALARTERKSGSGYTGFTCYAAPDVTLEQDLVRRDLTINAMVEDEHGHVIDPLNAR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--- 199
DL NR ++ I ED LR+LR RF A + + ++ +
Sbjct: 114 LDLDNRLLRHI---SESFSEDPLRVLRVARFAARFHQLGFTIAKETLTLMQEMTQAGDLA 170
Query: 200 -LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E+ K L A NP + G I ++ + +
Sbjct: 171 ELTPERVWQEVEKTLSADNPEVFFQVLREIGALAVILPELDALFNLAVKNSENDSTSIGQ 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + L+ +S ++ ++ +SI + K
Sbjct: 231 QALTQLKQSASLSTDLAVRFAALMQQLDH------------------HQISIKALAKRCK 272
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + +A + +N D I+++ + W+KP
Sbjct: 273 VPNEHRDLALQVSAQQENIHNARSLDPADIIRLFDNTDAWRKP 315
>gi|255065916|ref|ZP_05317771.1| multifunctional CCA protein [Neisseria sicca ATCC 29256]
gi|255049827|gb|EET45291.1| multifunctional CCA protein [Neisseria sicca ATCC 29256]
Length = 418
Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 70/346 (20%), Positives = 124/346 (35%), Gaps = 18/346 (5%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIK 81
K+ +VGGAVRD L+ L V+D D ++ P +
Sbjct: 4 KTHAIKTYLVGGAVRDYLLGLPVKDHDWVVVGANAQTMLA------QGFQPVGKDF--PV 55
Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVID 137
+ + + + R++ T YA F D + D +RRD TINA+ D +ID
Sbjct: 56 FLHPETHEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDDLIID 115
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
GG DL ++ + ED +RILR RF A YG + + + + G
Sbjct: 116 PFGGQQDLAAGILRHV---SPAFAEDPVRILRTARFAARYGFEIAEETMRLMRQMVENGE 172
Query: 198 -KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
L +ER+W E+ K L KN I + G K + +V + E
Sbjct: 173 VDALVAERVWQELAKGLMEKNSRRMIEVLRECGALKVLLPEVDALFGVPQRADYHPEIDS 232
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
L+ + + ++ + ++ + + + E+ +
Sbjct: 233 GIHTLMTLQRAADMGLSLPERYAALLHDLGKAKTP-PDILPKHHGHDLAGVEPVREVNQR 291
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A+L + ++ + IL VL +++P
Sbjct: 292 LRAPRHCAELAELVCRWHIMFHQVGQFKNKTILTVLKKTDAFRRPE 337
>gi|170725528|ref|YP_001759554.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella woodyi ATCC 51908]
gi|226702085|sp|B1KHF1|CCA_SHEWM RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|169810875|gb|ACA85459.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Shewanella woodyi ATCC 51908]
Length = 413
Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 60/342 (17%), Positives = 122/342 (35%), Gaps = 21/342 (6%)
Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD+L+ L ++D D + P+++ + K K P + K
Sbjct: 4 YLVGGAVRDNLLKLPIKDRDYMVVGAAPEQMFELGYKQVGKDFPVF--------LHPKTQ 55
Query: 89 FDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ T Y + D LRRD TINA+ D +G++ D GG+ D
Sbjct: 56 QEYALARTERKTGSGYGGFSCDASPDVTLEEDLLRRDLTINAIAQDDKGELFDPYGGIKD 115
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
+ ++ ++ + +ED LR+LR RF A + ++ K
Sbjct: 116 IESKMLRHV---SDAFVEDPLRVLRVARFAARFHHLGFTVADETLALMTKISQSGELEAL 172
Query: 205 IWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ K L +NP I + + +F ++ + + E
Sbjct: 173 TSERVFLELDKALSTQNPQIFIEVLNQCQALEILFPEIHALFGVPQPEKWHPEIDTGIHT 232
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+L +S ++ ++ + + + + I + +
Sbjct: 233 LMVLAQAAKLSDENSVRFAALVHDLGKALSPK-ATLPKHHGHGQSGLALIKVLCARAKVP 291
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + +N+ ++++ W+KP
Sbjct: 292 NEYRDLALLVSDQHQNVHNIRELRPETLIKIFDKADLWRKPD 333
>gi|76578249|gb|ABA47724.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710b]
Length = 432
Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 69/356 (19%), Positives = 121/356 (33%), Gaps = 31/356 (8%)
Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
L K VGGA+RD+L+ L V+D D + P+++ + P +
Sbjct: 15 LRAIAMKIYAVGGAIRDALLGLPVRDRDYVVVGATPEQMAA------QRFRPVGKDF--P 66
Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK-- 134
+ + + R++ T Y F + D +RRD TINA+ +
Sbjct: 67 VFLHPDTHEEYALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGA 126
Query: 135 ----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
V+D GG DLR + + +GDA +ED +RILR RF A + E + D
Sbjct: 127 LVGPVVDPFGGQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALM 183
Query: 191 IKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ L ER+W E+ + L P + G I ++ +
Sbjct: 184 RAMVDAGEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALARILPEIDALFGVPQRA 243
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
E + ++ S+ + + +
Sbjct: 244 DYHPEVDTGVHVMMVIDHAAKQG----YSLAVRFAALTHDLGKATTPADVLPRHIGHEGR 299
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
S+ +K L L + +A + NL ++++L +KP
Sbjct: 300 SVDLLKPLCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRLLERADALRKP 355
>gi|260582187|ref|ZP_05849981.1| tRNA nucleotidyltransferase [Haemophilus influenzae NT127]
gi|260094819|gb|EEW78713.1| tRNA nucleotidyltransferase [Haemophilus influenzae NT127]
Length = 416
Score = 96.8 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 73/349 (20%), Positives = 122/349 (34%), Gaps = 25/349 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L V+D D I P ++ + + K P + K
Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVF--------LNPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ + GK+ID GG
Sbjct: 54 TKEEYALARTERKSSTGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGKIIDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL NR ++ I ED LR+LR RF A Y ++ A+ L
Sbjct: 114 QDLENRILRHI---SPAFSEDPLRVLRVARFAARYHSLGFKIASETLALMAELALSGELQ 170
Query: 203 ERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ K L KNP ++ G +F ++ + E
Sbjct: 171 HLTAERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEIDALYGVPNPVKHHPEVDSFI 230
Query: 259 KIDSLLRFIVLI----SWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEI 313
+L+ V + +K ++ A L + + I + + +
Sbjct: 231 HTMLVLKQAVNLTENNPILNKSAVRFAAICHDLGKALTPQNILPHHYGHEQAGIKPTRSL 290
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
K + +A+L H + ++ + + W+KP
Sbjct: 291 CKRLKVPSYFQELAELTCEFHTHIHKAFELRAETVITLFNRFDVWRKPQ 339
>gi|15642442|ref|NP_232075.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Vibrio
cholerae O1 biovar El Tor str. N16961]
gi|153820126|ref|ZP_01972793.1| tRNA nucleotidyltransferase [Vibrio cholerae NCTC 8457]
gi|227082567|ref|YP_002811118.1| tRNA nucleotidyltransferase [Vibrio cholerae M66-2]
gi|229507494|ref|ZP_04396999.1| tRNA nucleotidyltransferase [Vibrio cholerae BX 330286]
gi|229512311|ref|ZP_04401790.1| tRNA nucleotidyltransferase [Vibrio cholerae B33]
gi|229519447|ref|ZP_04408890.1| tRNA nucleotidyltransferase [Vibrio cholerae RC9]
gi|229606999|ref|YP_002877647.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Vibrio
cholerae MJ-1236]
gi|254849570|ref|ZP_05238920.1| multifunctional CCA protein [Vibrio cholerae MO10]
gi|255746882|ref|ZP_05420827.1| tRNA nucleotidyltransferase [Vibrio cholera CIRS 101]
gi|262162047|ref|ZP_06031063.1| tRNA nucleotidyltransferase [Vibrio cholerae INDRE 91/1]
gi|298500196|ref|ZP_07010001.1| tRNA nucleotidyltransferase [Vibrio cholerae MAK 757]
gi|73619894|sp|Q9KPC6|CCA_VIBCH RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|254813702|sp|C3LQY9|CCA_VIBCM RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|9657022|gb|AAF95588.1| tRNA nucleotidyltransferase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|126509333|gb|EAZ71927.1| tRNA nucleotidyltransferase [Vibrio cholerae NCTC 8457]
gi|227010455|gb|ACP06667.1| tRNA nucleotidyltransferase [Vibrio cholerae M66-2]
gi|229344136|gb|EEO09111.1| tRNA nucleotidyltransferase [Vibrio cholerae RC9]
gi|229352276|gb|EEO17217.1| tRNA nucleotidyltransferase [Vibrio cholerae B33]
gi|229354999|gb|EEO19920.1| tRNA nucleotidyltransferase [Vibrio cholerae BX 330286]
gi|229369654|gb|ACQ60077.1| tRNA nucleotidyltransferase [Vibrio cholerae MJ-1236]
gi|254845275|gb|EET23689.1| multifunctional CCA protein [Vibrio cholerae MO10]
gi|255735284|gb|EET90684.1| tRNA nucleotidyltransferase [Vibrio cholera CIRS 101]
gi|262028296|gb|EEY46953.1| tRNA nucleotidyltransferase [Vibrio cholerae INDRE 91/1]
gi|297540889|gb|EFH76943.1| tRNA nucleotidyltransferase [Vibrio cholerae MAK 757]
Length = 403
Score = 96.8 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 116/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P +
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPN 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D G++ID GG
Sbjct: 54 SKEEHALARTERKTSVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDNSGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL + ++ + +ED LR+LR RF A + AK +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L A +P + + + G + ++ + + E
Sbjct: 171 HLTAERVWQEWHKSLSAHHPEMFLQVLRDCGALAVVLPEIDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + +S + + + I + +
Sbjct: 231 HTLMVAKQAAQLSDSLLVRFAAQVHDLGKG-VTPPSEWPRHKLHCHTGLNIIESLCERIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + L+VL + W+KP
Sbjct: 290 VPNEFRDLALAVCAQHSNIHRADELKPTTKLKVLGLLDVWRKPE 333
>gi|33239786|ref|NP_874728.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|33237312|gb|AAP99380.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 416
Score = 96.8 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 70/416 (16%), Positives = 132/416 (31%), Gaps = 34/416 (8%)
Query: 1 MVSIVQHKWFHD-SDL-INILSLL-----NKGEDKSCIVGGAVRD---SLMNLSVQ---- 46
M + + K+ + +L + L + IVGG VRD L++ +
Sbjct: 1 MKGLPKAKFTDEFPNLPQGLCKNLTLAADQAAVKRIAIVGGFVRDELSHLIHNESKHNFR 60
Query: 47 DIDIATTILPDRVMRIFSKTRYKVIPT----SISYGTIKIICRKKYFDITTLRSDLITDG 102
DID+ K K + SY TI++ D+ R + +
Sbjct: 61 DIDLVIEGSVKDFAMQLQKNLGKSNVIINRLNPSYLTIELKINDVAIDVARARIERYENL 120
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRIL 161
+ + D RRDFTIN++ D + ++ID G+N + + I+FI D
Sbjct: 121 AENPKIAPSEINKDLFRRDFTINSIAFDLKSKELIDPYEGINSISEKKIEFIHDKSVS-- 178
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED R+ R R+ A G K +++ L + +
Sbjct: 179 EDPTRVFRASRYSARLGFNLTPLAIKQIRSTIKTWPWHWTTQMPPENAPAALATRLRME- 237
Query: 222 IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281
+ +++G L L +L +I +Q + R +
Sbjct: 238 LELLFDGTEQWRGALQQ----LQELGALILLDQELQNNKHWEQRISWAFKLGVSPLTAFI 293
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
A + I ++ I + L + + + + N
Sbjct: 294 AGSSNPYCLGMRLQIPKKEQQLLIESKEIMDHFCSISLSENIEVWDPSRWCEEIESTNWK 353
Query: 342 HQDTC--------FILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
+ F +L W+ +T D+++ G G ++G L +
Sbjct: 354 PESIAITICLMPSFWSFLLRWWEKWRLVKSKITAKDLLQTGWKSGPELGLELKRLR 409
>gi|240278564|gb|EER42070.1| poly(A) polymerase [Ajellomyces capsulatus H143]
gi|325090516|gb|EGC43826.1| poly(A) polymerase [Ajellomyces capsulatus H88]
Length = 639
Score = 96.8 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 70/480 (14%), Positives = 143/480 (29%), Gaps = 98/480 (20%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSK---------------------- 65
VGG VRD L+ + DID+A +R +
Sbjct: 151 LRFVGGWVRDKLLGVDSHDIDVAINCMTGERFGEGLKEYLDMPGNLEKYKACHSGNPSII 210
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + P + T D+ LR + +D + + D+LR
Sbjct: 211 DFIKIHKIEKNPEKSKHLETATTKIFGLDIDLVNLRKETYSDDSRNPQIEIGTPEEDALR 270
Query: 120 RDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD T+NAL+ + I+ G D+ N+ I+ + +D LR+LR RF +
Sbjct: 271 RDATVNALFYNIHTDTIEDFTGKGLQDMENKIIRTPLAPYQTFKDDPLRVLRLIRFASRL 330
Query: 178 GEKNIDSDGLVASIKAKK------------------------------------GLKILS 201
G I+ K +
Sbjct: 331 GYTIDSDTEEAMKIEDIKAALKAKITQERIGVEMEKTLRGPDPLTALQRINRLGLYDTIF 390
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ + + NA+ + + + + E E+ F W +
Sbjct: 391 ANHQDNAGVDTSHWERGYNALALLLSKSTANMTESQKTRKHVRDILIRNENERYFAWFLA 450
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSL-------------------PREIRYFLISFFNCN 302
+L + ++ + KS + + + R +
Sbjct: 451 ALAPWTIVADPKPSKSSKPPVPRATTVARDSLRADNRAAGIISAASKNYRMIWDIKSSFL 510
Query: 303 FNQKTLSIPEIK-KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL----QVLSDIIH 357
N+ + E++ K+ +L LA+ + Q+ + ++LS I
Sbjct: 511 KNEIADTPAEMRVKMGQFIRSLSHDWRLCFVLAMLLEVMQRQEADQVFYSYGKLLSYIEE 570
Query: 358 WKKP-----LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
P+ G D++ + G + + + + + + S+E ++ +LR+
Sbjct: 571 SNLLDVCSLRTPINGRDIINVLSVKTGPWMTRAMDMVIEWQLRNPEETSKEAAINEILRR 630
>gi|237747276|ref|ZP_04577756.1| tRNA nucleotidyltransferase polyA polymerase [Oxalobacter
formigenes HOxBLS]
gi|229378627|gb|EEO28718.1| tRNA nucleotidyltransferase polyA polymerase [Oxalobacter
formigenes HOxBLS]
Length = 427
Score = 96.8 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 62/342 (18%), Positives = 120/342 (35%), Gaps = 19/342 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGAVRD++M V D D + ++ + P + + +
Sbjct: 2 KIYTVGGAVRDTVMGRPVHDRDYVVVGSAVEEMLSL------GFKPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWK----ADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y VF + D LRRD TINA+ ++G++ID GG
Sbjct: 54 TKQEYALARTERKVAPGYKGFVFHASPEVTLKEDLLRRDLTINAMAMSEEGELIDPFGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK--KGLKIL 200
D+ + + + ED +RILR RF A + + + + + K + L
Sbjct: 114 RDIEAKIFRHV---SEAFSEDPVRILRLARFAARFTDFTVAPETMALMKKMVASGEVDAL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER+W E+++ L + P I M+ G +F +++ + + E
Sbjct: 171 VPERVWKELSQGLMEEKPSRMIAIMHECGALARLFPEIEALWDVPQPEKYHPEIYTGKHT 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
L + ++ + L + + + + + ++
Sbjct: 231 LLALDYSAKKNYPLTVRFSVLLHDLGKG-TTPPNLWPHHRAHEERGAALVDNVCRRLHVS 289
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
IA + + T + VL +++P
Sbjct: 290 NMYRDIAVMTAREHGNIRRSTELRAKTAVMVLERCDAFRRPE 331
>gi|145612375|ref|XP_367164.2| hypothetical protein MGG_07089 [Magnaporthe oryzae 70-15]
gi|145019556|gb|EDK03784.1| hypothetical protein MGG_07089 [Magnaporthe oryzae 70-15]
Length = 524
Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 63/453 (13%), Positives = 129/453 (28%), Gaps = 68/453 (15%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIF----------SKTRYKVIPTSISY 77
GG VRD L+ DID+A + + R + +
Sbjct: 65 LRWAGGWVRDKLLGTESHDIDVAISCMTGEAFTRELVAFCNDAANRDRHGISEGDIGNLH 124
Query: 78 G------------TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
T+ D LR + T+ + + D+LRRD T+N
Sbjct: 125 KVAANPDKSKHLETVTTRMFGLEVDFVNLRKETYTEDSRNPQMEFGTAEEDALRRDATVN 184
Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK---- 180
AL+ + +V D+VGGL D+ + I+ + +D LR+LR RF + G
Sbjct: 185 ALFYNIHTSEVEDFVGGLRDMDQKLIRTPLEPLQTFKDDPLRVLRLVRFASRLGFTIDPS 244
Query: 181 -------------------------NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215
++ S + + +N L
Sbjct: 245 AEKTMSAPDVLEALRLKISRERVGVEVEKMLKDPSRTNLPSPDLSRWSTAYECMNHLTTN 304
Query: 216 KNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274
P + + + + + L E + + + L I +
Sbjct: 305 TTPGSIYHVLVRTEEEAYFCWILTAILPWEVLELPEEKIKGSQTLPIATLAAREGIRASN 364
Query: 275 K-----KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
K + K+ + ++ + ++ + A
Sbjct: 365 KLCDIVTATHRNRKEIQMLKKAVCDNEPYVKERDRMGMAVRRWDTRVGNWRPQVLAAALA 424
Query: 330 KIFLALHYNNLTHQD-----TCFILQVLSDIIHWKKPLFP--LTGDDV-VKYGIPPGKKV 381
++ ++ +D L L ++ P + G + G+ PG +
Sbjct: 425 EVMTCAEPGSVKSRDEVLSGWQKFLDHLEELDVLDAPALKKIIDGKTLSKALGVKPGPWM 484
Query: 382 GNILVHCKQEWINS-SFQLSQEDLHHLLRKLIA 413
+ L C + + + E + + ++
Sbjct: 485 TSALDVCVAWQLRNPGVTDTTEAVEEVRQRAKE 517
>gi|15806210|ref|NP_294915.1| tRNA nucleotidyltransferase/poly A polymerase family protein
[Deinococcus radiodurans R1]
gi|6458932|gb|AAF10763.1|AE001968_2 tRNA nucleotidyltransferase/poly A polymerase family protein
[Deinococcus radiodurans R1]
Length = 434
Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 68/435 (15%), Positives = 128/435 (29%), Gaps = 66/435 (15%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+ +VGGAVRD L + D D A + + P G ++ +
Sbjct: 15 AALVGGAVRDWLRGVRSADYDWAHPDPAAGARALAALVGGAAFPLDEERGYWRVTAGEVQ 74
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148
D L + + D RRDFT+NA+ + +++D +GG DL+ R
Sbjct: 75 HDFVPLP---------------PNLEDDLRRRDFTVNAIALREGRRLVDPLGGQQDLKRR 119
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208
++ + + + R D LR R RF A W
Sbjct: 120 VLRMVSEDNLR--ADPLRAWRAARFVTTLSFTLEPQTEQAVRQVAADLKAGRLPFPAWER 177
Query: 209 I----NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---------ISLDQLSQVIEAEQV 255
+ + LL + + I+ + G+ +++E LD +EA
Sbjct: 178 VRDELHALLRSPDAARGILTLEALGLLDLTLPELREGQGLTQGGFHHLDVFEHGVEALHQ 237
Query: 256 F---EWKIDSLLRFIVLISWQDKKSIL-----------------------SMAKKFSLPR 289
D LLR+ L+ K + + LP
Sbjct: 238 LLTRRPDADLLLRWATLLHDVGKPRTFARDPDTGRRSFHGHDRVGAELTTQILTRLKLPG 297
Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
+ + Q + ++ + + + +
Sbjct: 298 ADVKRAAALVKAHMVQLPADDAQARRFVHRRRELLPDLLSLMLADREAARGPSSSELGRF 357
Query: 350 QVLSDIIHW--------KKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLS 400
+ + P L+G +V+ G+ PG +VG +L +
Sbjct: 358 AYMLAMERVLAALEEQPAAPPPLLSGKEVMALLGLTPGPRVGEVLRALAEARALGEVGTP 417
Query: 401 QEDLHHLLRKLIASS 415
QE +++ +
Sbjct: 418 QEA-RAFVQRWAEET 431
>gi|255318403|ref|ZP_05359636.1| multifunctional CCA protein [Acinetobacter radioresistens SK82]
gi|262378633|ref|ZP_06071790.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter
radioresistens SH164]
gi|255304395|gb|EET83579.1| multifunctional CCA protein [Acinetobacter radioresistens SK82]
gi|262299918|gb|EEY87830.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter
radioresistens SH164]
Length = 415
Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 55/344 (15%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ Q+ D + P++++ +P + +
Sbjct: 2 QVYLVGGAVRDHLLGHPYQEKDYVVVGATPEQLLA------QGFMPVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + + D +RRD TINA+ D+QG+V D G
Sbjct: 54 TKDEYALARTERKSGQGYHGFEFHTDSSVTLEEDLIRRDLTINAMAMDEQGQVYDPYQGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL+N+ ++ + +ED LR+LR RF A Y S+ +
Sbjct: 114 QDLKNKVLRHV---SDAFIEDPLRVLRVARFAARYAPYGFKIAEETMSLMQQLVNTGELD 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E ++ L + + G + ++ + E
Sbjct: 171 TLTPERVWKETSRALMEQRADVYFEVLRECGALNILLPELNALFGVPQRPEYHPEIDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L+ + ++ ++ + + + +
Sbjct: 231 HTLMSLQ-QACQANYSLDVRFAVLVHDLGKALTPTDILPRHIMHEERGVKPVTAVCDRLK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + ++L + ++P
Sbjct: 290 VPATTKQLALAVCKEHLKCHQALTLKPGTLWRLLQRLDVLRRPE 333
>gi|28317079|gb|AAO39558.1| LP10544p [Drosophila melanogaster]
Length = 307
Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 86/308 (27%), Positives = 148/308 (48%), Gaps = 16/308 (5%)
Query: 108 VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167
++T DW+ D+ RRD TIN+++ G V DY G +DL+ R + F+G+A RI ED+LRI
Sbjct: 1 MYTTDWQLDANRRDLTINSMFLGFDGTVYDYFYGYDDLQERRVVFVGEADIRIKEDFLRI 60
Query: 168 LRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
LR+FRF+ E N D L A + KGL +S ERIWSE+ K++ + M
Sbjct: 61 LRYFRFYGRIASEENNHDKATLAAIKENAKGLARISGERIWSELQKIVPGNFGAALFLEM 120
Query: 226 YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ +F+ I L +E LD+ ++ +A FE +L ++ + + K
Sbjct: 121 HRCNLFEYIGLP-KEPYLDEFDRLCKALDQFEKPHQPILYLAGMLHSVEDAMEMHKRLKL 179
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345
S ++ F +K S + + + I + + L Y+
Sbjct: 180 SAYERD----LARFITQEREKVGSQYTTLRDYQKLCLQKYIQRDFVEQLLKYSGK----- 230
Query: 346 CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
L++ + + W KP FP+ G+ + + G+ G ++G ++ K W +S FQL+ +DL
Sbjct: 231 ---LELYNQLKSWVKPDFPIRGNALAQRGL-NGMRLGLVMDELKLLWADSDFQLTHDDLL 286
Query: 406 HLLRKLIA 413
+ ++
Sbjct: 287 KWIPNVLK 294
>gi|254507504|ref|ZP_05119638.1| multifunctional CCA protein [Vibrio parahaemolyticus 16]
gi|219549574|gb|EED26565.1| multifunctional CCA protein [Vibrio parahaemolyticus 16]
Length = 408
Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 62/342 (18%), Positives = 112/342 (32%), Gaps = 21/342 (6%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+N+ V D D P++++ + + K
Sbjct: 9 YLVGGAVRDQLLNIDVYDRDWVVVGSTPEQMLE------QGFTTVGKEF--PVFLHPKTK 60
Query: 89 FDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ G + D LRRD TINA+ D GK+ID G D
Sbjct: 61 EEHALARTERKIGAGYTGFECYFAQDVTLEEDLLRRDLTINAMAQDPSGKIIDPYNGQQD 120
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK----IL 200
L++R ++ + ED LR+LR RF A + K L
Sbjct: 121 LQDRLLRHV---SEAFTEDPLRVLRVARFAAKLAHLGFTVAEETIELMRKIAQSGELEHL 177
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ ER+W E +K L ++P + + + ++ + + E
Sbjct: 178 TPERVWQEWHKSLSTQSPHIFLQVLKTCDALTVVLPELDALFGVPQPEKWHPEIDTGIHT 237
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+ +S + + + I ++ +
Sbjct: 238 LMVAEQAAFLSDSLPVRFAAQVHDLGKG-VTPESEWPSHKMHCHTGLKLIKKLCDRVRVP 296
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A + + + L+VL+ W+KP
Sbjct: 297 NEYRDLALMVCEQHSNIHRAAELRPETKLKVLNKFDVWRKPD 338
>gi|187251052|ref|YP_001875534.1| tRNA nucleotidyltransferase/poly(A) polymerase [Elusimicrobium
minutum Pei191]
gi|186971212|gb|ACC98197.1| tRNA nucleotidyltransferase/poly(A) polymerase [Elusimicrobium
minutum Pei191]
Length = 374
Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 58/399 (14%), Positives = 109/399 (27%), Gaps = 46/399 (11%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
+ ++ + K +VGGAVRD + QD+DI ++ K
Sbjct: 11 KELGEEADRHKIKVWLVGGAVRDFYLGRKTQDVDITVEGDSKVLIDFLIKFHGAEAQEFD 70
Query: 76 SYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+GT ++ D R ++ V D RRDFT NA G
Sbjct: 71 DFGTARVKLKNGLKLDFVRARKEVYLKPAALPKVSPSTIDKDLFRRDFTANAWALSINGA 130
Query: 135 VIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+ K ++D R R RF + + +
Sbjct: 131 TFGVYYDPFKAKQSIDKKQIKVLHDKSFIDDPTRAYRAVRFAGRFNWTIEKNTKWLLKNA 190
Query: 193 AK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+K +LS ER+ +E+ K+LE K + + IF ++
Sbjct: 191 SKAALPSLLSRERLRAELIKILEEKEIRKIFKFLQEYDLNNFIFPKLK----------WH 240
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
++ L + + + Y N +
Sbjct: 241 NSLTKTKNVNVRLGILACSLGAQGGDFIESLHLPRALSQELYGAWEVVNSSMAPLKELTG 300
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
++ + K A L +TG +
Sbjct: 301 TQLEIIKKFNPKFCKAALTAVF-------------------------------ITGGKIA 329
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ G GK++ ++ ++ + + L + K
Sbjct: 330 EQGF-NGKEITSVFNELRRAQFKGAVKNKNAALKFIKNK 367
>gi|264680397|ref|YP_003280307.1| metal dependent phosphohydrolase [Comamonas testosteroni CNB-2]
gi|262210913|gb|ACY35011.1| metal dependent phosphohydrolase [Comamonas testosteroni CNB-2]
Length = 420
Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 57/273 (20%), Positives = 101/273 (36%), Gaps = 25/273 (9%)
Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
K VGGAVRD+L+ L V D D P+++ +P + +
Sbjct: 4 FKVFKVGGAVRDALLGLPVNDTDWVVVGATPEQMSAR------GFVPVGRDF--PVFLHP 55
Query: 86 KKYFDITTLRSDLIT-DGRYAKVVFT---RDWKADSLRRDFTINALYADQQGK------- 134
+ + + R++ G VV T + D RRD TIN++ A
Sbjct: 56 RTHEEYALARTERKNGMGYRGFVVHTAADVTLEEDLARRDLTINSIAAPADWTGNGNLED 115
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
++D G DL+NR ++ + DA ED +RILR RF A + + ++ + + +
Sbjct: 116 LVDPYHGQQDLKNRVLRHVTDA---FREDPVRILRLARFAARFTDFSVAPETMELMREMV 172
Query: 195 --KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
+ L ER+W EI++ L + P + G + ++ ++
Sbjct: 173 AAGEVDALVPERVWQEISRGLMEERPSRMFEILRECGALVRLLPELDKLWGVPQRAEYHP 232
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
E +L + + F
Sbjct: 233 EIDCGVHAMMVLDMSARLQAPLSVRFACLCHDF 265
>gi|186684574|ref|YP_001867770.1| polynucleotide adenylyltransferase region [Nostoc punctiforme PCC
73102]
gi|186467026|gb|ACC82827.1| Polynucleotide adenylyltransferase region [Nostoc punctiforme PCC
73102]
Length = 440
Score = 96.4 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 70/429 (16%), Positives = 140/429 (32%), Gaps = 64/429 (14%)
Query: 29 SCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKIICR 85
+ +VGGAVRD+L+ D+D +V R + + + +++
Sbjct: 25 AYMVGGAVRDALLGRTREYLDLDFVIPSKAVKVARAIAHHYKAGFVLLDAERQIARVVFP 84
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYVGGLND 144
D + D RRDFT+NA+ + ++ID + G D
Sbjct: 85 HATADFA--------------QQEGDSLEVDLHRRDFTVNAIAYNPHTQEIIDPLQGYVD 130
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
L+ ++ I A+ + +D LR++R +R A G I+ A L +++ER
Sbjct: 131 LQQGILRMISPAN--LEDDPLRLMRGYRQAAQLGF-TIEPGTRTAICSLASHLSKVAAER 187
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL- 263
+ EI LL I + G+ +F + SL++L+ V A + L
Sbjct: 188 VRVEIGYLLANSQGTPWISSAWEDGLLAPLFKNATRESLNKLAAVDNAAALITENWQQLG 247
Query: 264 -----------------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + + + + ++ + R + + K
Sbjct: 248 AKLQEYVRDSIKTTWLGIAKLACLVNPNPELAEIELQQLTYSRAEIRGVTTALKLLPQFK 307
Query: 307 TLSIPEIKKLFYLYGDKVM------IAKLKIFLALHYNNLTHQDTC-------------- 346
+ + ++ ++ +A L + Q T
Sbjct: 308 VVDMSLREQYLLFRDADIVFPTAAVLAMALDNLVEAMSGDKPQHTAVATSLETKARDCPV 367
Query: 347 ---FILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402
I + L+ P ++G +++ IP +G +L E
Sbjct: 368 LTLLINRYLNPDDLVAHPSLLVSGKELLVALDIPASPIIGQLLTEIAVAQAEGKVSTPTE 427
Query: 403 DLHHLLRKL 411
+ R+L
Sbjct: 428 AI-AYARQL 435
>gi|254578934|ref|XP_002495453.1| ZYRO0B11748p [Zygosaccharomyces rouxii]
gi|238938343|emb|CAR26520.1| ZYRO0B11748p [Zygosaccharomyces rouxii]
Length = 539
Score = 96.4 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 76/481 (15%), Positives = 147/481 (30%), Gaps = 96/481 (19%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSK----------------TRYKV 70
+ I GG VRD L+ D+DIA + ++ +
Sbjct: 59 ELRITGGWVRDKLLGYDSHDLDIAINLMTGEQFAIQLGDYLRENYSKYKVTPNNVHKIDK 118
Query: 71 IPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
P + T D LRS+ T+ +V + D+LRRD T+NAL+
Sbjct: 119 NPEKSKHLETATTKLFGMEVDFVNLRSEEYTEQSRIPIVKFGTPEEDALRRDATLNALFY 178
Query: 130 DQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ + ++ G+ DL++ ++ L+D LR+LR RF + Y K
Sbjct: 179 NIKQNKVEDFTRRGIEDLKSGILRTPLPPRQTFLDDPLRVLRLIRFASKYNFKIDGEALN 238
Query: 188 VASIK--AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ + +S ERI E++K+L NPL I + I +F+ ++ L +
Sbjct: 239 EMNNRDINMAFGSKVSKERIGVEVDKILRGPNPLLGISLIQQAHIDNVVFVWNNDLGLVE 298
Query: 246 LS-----------------QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+ ++ + ++ + + + + + K F L
Sbjct: 299 FNKEHGEDWKTIDGIYQSGRLNLHIKELVTRLPDFMNKWPALLSHWQNAASNFKKCFLLS 358
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKK--------------------------------- 315
+ F +K + I +
Sbjct: 359 NVLLPFSQLRVIWTTRKKNNNTMSITESILKDDLKIGKNESAQVAKIVDSNRQYAEMVSG 418
Query: 316 -----------------LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL---SDI 355
+Y IA F H N D ++
Sbjct: 419 FYSHRNEPEFGRSFVGNFLRVYKGDWEIAHFTAFFFQHLQNEPIADQYEFFHKYIFEQNL 478
Query: 356 IHWKKPLFPLTGDDVVK--YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ + G + + G+ G +G I +++ ++E L ++ +I
Sbjct: 479 QTCHELKPLINGKE-MASSLGLKGGPWLGEINDRAITWQLDNP-NGTKEHLLEYIKGIIH 536
Query: 414 S 414
Sbjct: 537 E 537
>gi|85000969|ref|XP_955203.1| tRNA nucleotidyltransferase [Theileria annulata strain Ankara]
gi|65303349|emb|CAI75727.1| tRNA nucleotidyltransferase, putative [Theileria annulata]
Length = 615
Score = 96.4 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 78/473 (16%), Positives = 153/473 (32%), Gaps = 73/473 (15%)
Query: 6 QHKWFHDSDLINILSLLNKG------EDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDR 58
+ K+ + +LLN+ + +VGG VRD L++ +DIDIA + +
Sbjct: 140 RAKFKITESENRLFNLLNECVDFYDLKMDLRVVGGWVRDKLLDKDNKDIDIAIPKMTGIK 199
Query: 59 VMRIFSKT------------RYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYA 105
+ K P + T + D LR++ +
Sbjct: 200 FCEYLNNFTKDKYGFSRTVGVVKRCPEQSKHLETATMNLLGFDVDFVNLRTEDYSSNTRI 259
Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILED 163
+ D++RRDFT+N+L+ + I+ G DL+N I+ + ++D
Sbjct: 260 PDMKIGTPVEDAMRRDFTVNSLFYNISKNFIEDFTGTGLEDLKNGIIRTCSSPYEIFMDD 319
Query: 164 YLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222
LR++R RF + + K + + K + ++ RI E+ +L N A
Sbjct: 320 PLRLIRAVRFSSRFNFKLDEKLKDSINEQVLKALAQKVTRPRISQELENILSKSNVSEAF 379
Query: 223 VHMYNGGIFKEIFLDVQEISLDQ-------------LSQVIEAEQVFEWKIDS------- 262
MY I + ++ LSQ +
Sbjct: 380 KLMYQFKILHVLLNVPPYDYDEEEKKRMRSRVTDEMLSQSCSLMERLNKSNFPDIDYKCL 439
Query: 263 ------------LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
L V S K +L ++ ++S F ++ +
Sbjct: 440 YLSALVSPTRELPLIGKVSFSEYLVKELLKLSNQYSSRSHTISQGSVTFGEFLDKSKVDR 499
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK---------KP 361
+ + + G + L + +V S+++
Sbjct: 500 VTLGSVIRMIGPLWKESLLLCLAESDRGTYIAFNILVDYKVYSELVSLANDLGITEAYNF 559
Query: 362 LFPLTGDDVVKY--GIPPGKKVGNILVHCKQEWINSSFQL---SQEDLHHLLR 409
P+TG ++V+ I G + L + + + S+++L H L+
Sbjct: 560 KAPITGPELVEVLPKITSGPEFKRAL----EFQVTERLKNENVSKDELKHKLK 608
>gi|238918485|ref|YP_002931999.1| hypothetical protein NT01EI_0531 [Edwardsiella ictaluri 93-146]
gi|259585842|sp|C5BHG5|CCA_EDWI9 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|238868053|gb|ACR67764.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 414
Score = 96.4 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 68/344 (19%), Positives = 125/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K+ +VGGAVRD + L QD D + Y+ + + +
Sbjct: 2 KTYLVGGAVRDKYLQLPTQDRDWVVVGAAPQT---LLAQGYQQ--VGKDF--PVFLHPRS 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ Y + D LRRD TINA+ D +G++ID GGL
Sbjct: 55 KEEYALARTERKAGQGYTGFSTYFAPDVTLEQDLLRRDLTINAMAEDDEGQLIDPYGGLQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL+ R ++ + +ED LR+LR RF A + + + + + L
Sbjct: 115 DLQQRQLRHV---SEAFVEDPLRVLRVARFAARFAPLGFEVAAPTLALMQQMSQQGELAH 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L+ ER+W E K L P + + G +F ++ L + + +
Sbjct: 172 LTPERVWLETEKALSGPVPQVYFQVLRDCGALAVLFPEIDR--LFGVPAPAQWHPEIDTG 229
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI-PEIKKLFY 318
I +LL + D ++ A + + + + + + E+ +
Sbjct: 230 IHTLLTLAMASHLSDDVAVRFAALTHDVGKGLTNPNFWPHHHGHGPAGVRLVREMCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A L + + +L++L I W++P
Sbjct: 290 TPNPVRDLALLVAEYHDLIHTVERLRPATLLKLLDTIDVWRRPQ 333
>gi|290474853|ref|YP_003467733.1| tRNA nucleotidyl transferase [Xenorhabdus bovienii SS-2004]
gi|289174166|emb|CBJ80953.1| tRNA nucleotidyl transferase [Xenorhabdus bovienii SS-2004]
Length = 393
Score = 96.4 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 73/395 (18%), Positives = 141/395 (35%), Gaps = 41/395 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVR+ L+ L V + D P+ ++ + K P + K
Sbjct: 2 KVYLVGGAVRNQLLGLPVTERDWVIVGGNPEELLSQGYQQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ + Y + D LRRD TINA+ +G++ID G
Sbjct: 54 THEEYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIAQTAEGELIDPYHGA 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
+DL++R ++ + ED LR+LR RF A++ + S+ K
Sbjct: 114 DDLKHRILRHV---SGAFSEDPLRVLRLARFAAYFAHLSFSIAPETQSLITKMVKSGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257
+ ER+W E K L + +P +++ G +F ++ + + +S ++ +
Sbjct: 171 SLTPERVWRETEKALTSPSPQIYFQVLHDCGALAILFPEIDRLFGVAPISSWEKSSLQMD 230
Query: 258 WKIDSL--LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
I SL L +S + S+ + + + + +
Sbjct: 231 AGIHSLKALHMATQLSQEIDIRFASLCAHTEAIQVKQMCERLRIPNTARDLAVIVAQYHD 290
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL------QVLSDIIHWKKPL------- 362
+ L +F A+ + IL + +++ + P
Sbjct: 291 WVHTAEQLPPETLLALFNAVDAWRKPQRIEQLILCSQADARAYTELEASRYPQGRYLRDA 350
Query: 363 ----FPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
+ DV+ G G ++ L +Q I
Sbjct: 351 FTTVSQVNVQDVIARGFQ-GAEIRTELDRQRQLAI 384
>gi|303253062|ref|ZP_07339213.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|302648094|gb|EFL78299.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Actinobacillus pleuropneumoniae serovar 2 str. 4226]
Length = 395
Score = 96.4 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 66/347 (19%), Positives = 119/347 (34%), Gaps = 23/347 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+NL V+D D + P++++ + P + K
Sbjct: 2 QIYLVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R + +G + D +RRD TINA+ D G++ D GG
Sbjct: 54 TKEEYALARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL NR ++ I ED LR+LR RF A + + + A L
Sbjct: 114 QDLANRLLRHI---SPAFSEDPLRVLRVARFAARFHSLGFKIAPETVKLMQEMTACGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E K NP + G +F + + + E
Sbjct: 171 HLTAERVWLETQKAFATDNPQIYFEVLREIGALAVLFPEFDRLFGVPQPEQHHPEIDSGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
++ ++ + + ++ + + ++L
Sbjct: 231 HTLLVIEQAKRLAKNAENPTALLWAALCHDLGKGLTEKDILPHHYGHEVKGVKPARELSN 290
Query: 319 LYGDKVMIAKLKIF---LALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ I H + + +L+V + + W+KP
Sbjct: 291 RLKVSTDVKDFAILVTEYHTHCHKMAELRPETVLKVFNALDIWRKPQ 337
>gi|254481065|ref|ZP_05094311.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[marine gamma proteobacterium HTCC2148]
gi|214038860|gb|EEB79521.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[marine gamma proteobacterium HTCC2148]
Length = 413
Score = 96.4 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 65/341 (19%), Positives = 123/341 (36%), Gaps = 21/341 (6%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD+L+ + D P +++ + + K P + +
Sbjct: 9 FLVGGAVRDALLGYPAYERDWVVVGATPKQMLELGYQQVGKDFPVF--------LHPETK 60
Query: 89 FDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ G + + D LRRD TINA+ D +G + D GG D
Sbjct: 61 DECALARTERKSGHGYTGFAVHCDPSVTLEEDLLRRDLTINAMAQDTEGNITDPYGGQQD 120
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKIL 200
L +R ++ + +ED LR+LR RF A Y + I + L L
Sbjct: 121 LADRVLRHV---SDAFVEDPLRVLRTARFAARYAHLGFAVAPETLALMTEIVNQDELAHL 177
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ERIW E+++ L +NP I + + G ++ ++ + + E
Sbjct: 178 PAERIWVELDRALGERNPEVFIEVLRDCGALAKLIPELDALFGVPQPEAHHPEIDSGVHT 237
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
L+ +V++S + + + + + + K
Sbjct: 238 LMSLQQVVILSDAGDVRFAVLLHDLGKG-VTPADELPRHIAHEFRGVKLVKAVCKRLKAP 296
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+A LH + +L++L+ ++P
Sbjct: 297 NQYRDLALKACEYHLHSHRAMELRGKTLLKLLTATDALRRP 337
>gi|145637482|ref|ZP_01793140.1| hypothetical protein CGSHiHH_03937 [Haemophilus influenzae PittHH]
gi|145269288|gb|EDK09233.1| hypothetical protein CGSHiHH_03937 [Haemophilus influenzae PittHH]
Length = 416
Score = 96.1 bits (237), Expect = 8e-18, Method: Composition-based stats.
Identities = 70/349 (20%), Positives = 120/349 (34%), Gaps = 25/349 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTIL-PDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L V+D D P ++ + + K P + K
Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGTNPATLLSLGYQQVGKDFPVF--------LNPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ + G++ID GG
Sbjct: 54 TKEEYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL NR ++ I ED LR+LR RF A Y ++ + L
Sbjct: 114 QDLENRILRHI---SPAFSEDPLRVLRVARFAARYHSLGFKIASETLALMTELALSGELQ 170
Query: 203 ERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ K L KNP ++ G +F ++ + E
Sbjct: 171 HLTAERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEIDALHGVPNPVKHHPEVDSFI 230
Query: 259 KIDSLLRFIVLI----SWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEI 313
+L+ V + +K ++ A L + + I + + +
Sbjct: 231 HTMLVLKQAVNLTENNPILNKSAVRFAAICHDLGKALTPQNILPHHYGHEQAGIKPTRSL 290
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
K + +A+L H + ++ + + W+KP
Sbjct: 291 CKRLKVPSYFQELAELTCEFHTHIHKAFELRAETVITLFNRFDVWRKPQ 339
>gi|301113854|ref|XP_002998697.1| tRNA nucleotidyltransferase, putative [Phytophthora infestans
T30-4]
gi|262111998|gb|EEY70050.1| tRNA nucleotidyltransferase, putative [Phytophthora infestans
T30-4]
Length = 486
Score = 96.1 bits (237), Expect = 8e-18, Method: Composition-based stats.
Identities = 60/466 (12%), Positives = 133/466 (28%), Gaps = 65/466 (13%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKT------- 66
L+++ + + GG VRD L+ D+DI + + +
Sbjct: 22 LLDVAAQPAADGAVLRVAGGWVRDKLLGRDSDDVDIVLDRMTGRAFADLVNAFETAQGRT 81
Query: 67 -----RYKVIPTSISY-GTIKIICRKK--YFDITTLR-SDLITDGRYAKVVFTRDWKADS 117
K P + T + + + D LR ++ V + D+
Sbjct: 82 ARTVGVIKANPDQSKHLETATMQIGEDMGWVDFVNLRAETYASEDNRIPTVEIGTPQQDA 141
Query: 118 LRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
RRDFTIN+L+ + K ++ G DLR+ ++ + L+D LR+LR RF +
Sbjct: 142 ERRDFTINSLFYNLATKQVEDYTGRGVEDLRHGRLRTPLEPRVTFLDDPLRVLRAVRFAS 201
Query: 176 HYGEK---------------------------------------NIDSDGLVASIKAKKG 196
+ L
Sbjct: 202 RFNCTLEDDLRAAAQLEEVRVALVRKVSRERVGKELSGMLTGSAAHPERALCLLHDLHLC 261
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----QLSQVIEA 252
+ + L +I + ++ L ++
Sbjct: 262 ESVFLPSALLENTPTCSPDGE-LESIDDNVWDRCYAYKKHELSVHILASLMLPFRRLCVR 320
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
++ +++ + + +D K + + ++ +++
Sbjct: 321 DKRRRSVATFVVQDSLKLPNRDAKDVDNALAHVDKLQQATADAFDRVKAGLLIRSIGAQW 380
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD-IIHWKKPLFPLTGDDV- 370
++ A A + + F QV + + L G+D+
Sbjct: 381 EICRDVALVQELADAGSVDEAAEARALVLKRYDTFSSQVRDAGLDGVWELKPLLNGNDLV 440
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ G+ PG + +L + + + E + H + A ++
Sbjct: 441 KQLGVKPGPHMKELLDRIMAWQLFNPEKTRDECMDHFKAVIAAEAK 486
>gi|262404759|ref|ZP_06081314.1| tRNA nucleotidyltransferase [Vibrio sp. RC586]
gi|262349791|gb|EEY98929.1| tRNA nucleotidyltransferase [Vibrio sp. RC586]
Length = 403
Score = 96.1 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 67/346 (19%), Positives = 116/346 (33%), Gaps = 25/346 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P + K
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLSAGFQAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D G++ID GG
Sbjct: 54 SKEEHALARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDNSGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL + ++ + +ED LR+LR RF A + +
Sbjct: 114 RDLAAKVLRHV---SLAFVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMTDIAQSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E +K L +P + + N G + +V + + E
Sbjct: 171 HLTAERVWQEWHKSLSTHHPEVFLQVLRNCGALAVVLPEVDRLFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPRE--IRYFLISFFNCNFNQKTLSIPEIKKL 316
+ + +S + + + S+ E ++
Sbjct: 231 HTLMVAKQAARLSESLPVRFAAQVHDLGKGVTPSAEWPSHKLHCHTGLKIIESLCERIRV 290
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +A + + L+VL + W+KP
Sbjct: 291 PNEFRD---LALAVCAQHSNVHRADELKPATKLKVLGLLDVWRKPE 333
>gi|260913888|ref|ZP_05920362.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325]
gi|260631975|gb|EEX50152.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325]
Length = 426
Score = 96.1 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 68/348 (19%), Positives = 129/348 (37%), Gaps = 24/348 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L++L V+D D PD ++ + + P + K
Sbjct: 8 QVYLVGGAVRDQLLHLPVKDRDWVVVGATPDDLLAQGYQQVGREFPVF--------LNPK 59
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y + + D LRRD TINA+ D +G + D+ GG+
Sbjct: 60 TKEEYALARTERKAGSGYTGFICEFSPNITLQEDLLRRDLTINAIAQDVEGNLYDFYGGI 119
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + +ED LR+LR RF A Y + + + L
Sbjct: 120 EDLNQRILRHV---SPAFVEDPLRVLRVARFAARYHSLGFTIAPETLRLMKQLTKQGELA 176
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257
L++ER+W E K L KNP + G K +F +++ + + ++ F
Sbjct: 177 HLTAERVWLETEKALLEKNPEIYFHTLRQVGALKVLFPELEALIGVPNPAKYHPEIDSFI 236
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ L + ++L + ++ + + +KL
Sbjct: 237 HTMLVLQQAVLLTENTNYHKSAVRFAAICHDLGKARTPKEILPHHYGHEKAGLEPTRKLC 296
Query: 318 YLYGDKVMIAKLKIFLALHYN---NLTHQDTCFILQVLSDIIHWKKPL 362
+ I + ++ ++++ + + W+KP
Sbjct: 297 KRFKLPSTIQEFAELCCEYHTLVHKAFELSPETVIKLFNRLDVWRKPR 344
>gi|297543648|ref|YP_003675950.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296841423|gb|ADH59939.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 467
Score = 96.1 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 86/477 (18%), Positives = 163/477 (34%), Gaps = 100/477 (20%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI-FSKTRYKVIPTSI 75
++ L K IVGG +RD ++N +D D +++ ++ K +P
Sbjct: 6 KLIRKLGKEAHNLYIVGGYIRDRILNREAKDYDFVVQENAEKIAKLVAEKLGGTFVPFMA 65
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY-----AD 130
GT +++ R + D T L+ + D D RDFT+NA+
Sbjct: 66 EKGTYRVVVRDEILDFTNLKGE--------------DIYIDLAHRDFTMNAMAIKLTDYF 111
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +ID GG+ D++NR IK +G ED LR LR RF A Y + +ID
Sbjct: 112 EFEYIIDPFGGVTDIKNRKIKHVGVM--TFKEDPLRALRAVRFAATY-KFDIDEATKAKI 168
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN-------------GGIFKEIFLD 237
+ + +K ++ ERI +EI +L+ KN + M + + +
Sbjct: 169 REEAELIKQVAPERIMNEIFIILKEKNSHKYLRMMEDLKLMENIFEEVAKMKEVGKCYYH 228
Query: 238 VQEISLDQLSQVIEAEQVFE-----------------------WKIDSLLRFIVLISWQD 274
+ + L V E E + K+ +++ L
Sbjct: 229 LTNAWIHSLKTVEEYENIINSMRFPKGVYDVVAEYLNRKLSSDNKVKDIIKLGALFHDIG 288
Query: 275 KKSILSM------------------------AKKFSLPREIRYFLISFFNCNFNQKTLSI 310
K L + + + ++ ++
Sbjct: 289 KPEALYIDTENRVHFYNHEIKGAEIVKKISSRMRMPKKESSLLKKLVLYHMKPLMYYVNG 348
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLA-----------LHYNNLTHQDTCFILQVLS---DII 356
K + + ++ + I L L + T FI ++L +
Sbjct: 349 GPTNKSLFRFFSELKDDSIAILLLSQADFTATRLNLGKEEEIPKFTDFITRLLKRYVEFK 408
Query: 357 HWKKPLF-PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+KPL PL ++ + + G+K+G IL ++ Q + + + ++
Sbjct: 409 ETEKPLLSPLD--IIINFDVKDGEKLGQILYEIRKNRFYGEIQDKNDAIEFVKERMK 463
>gi|123448783|ref|XP_001313117.1| polyA polymerase family protein [Trichomonas vaginalis G3]
gi|121894989|gb|EAY00188.1| polyA polymerase family protein [Trichomonas vaginalis G3]
Length = 448
Score = 96.1 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 81/440 (18%), Positives = 146/440 (33%), Gaps = 54/440 (12%)
Query: 10 FHDSDLINILSLLNKGEDK------SCIVGGAVRDSLMNLSVQDIDIATTI-----LPDR 58
+ ++ ++ + + GG VRD L+ DIDI +
Sbjct: 20 LTEKEV-SVFEKIKAAGSCFDPQVICRVAGGWVRDKLLGKQSDDIDICIEGCTSDDFGQK 78
Query: 59 VMRIFSKTRYKVI-----PTSISY-GTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTR 111
+ + F + K+I P + T+++ I + D+ LR +
Sbjct: 79 LSQQFPENTTKIIVMQENPKQSKFMKTVRVCIFGDTWIDVCNLRGEETE----------T 128
Query: 112 DWKADSLRRDFTINALYADQQGKVIDY-VGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170
D+ RD +INAL+ + ++ VGG+ DL+N+ I+ D ED LRI+R
Sbjct: 129 SPLTDAKHRDLSINALFYNITYSKVEDLVGGIPDLKNQIIRTPIDPDLTFTEDPLRIIRA 188
Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230
RF+ G K +S A + + ++ ER+ +E K++E + ++ G
Sbjct: 189 IRFYVRLGYKIHESIYEAAKLHVTDFEEKITKERVVAETIKIIEMGGLSTFLDYVIKIGF 248
Query: 231 FKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
F IF SL+ L V L I L + PR
Sbjct: 249 FDAIFDPYHLYSLNPLQAQERLNTVMARSPPDLHIPIQLGAIFYPIHDCEPRPDPEHPRR 308
Query: 291 IRYFLISFFNCNFNQKTLSIPEIKK--------------------LFYLYGDKVMIAKLK 330
+ + + K G K
Sbjct: 309 NQPAMEWAICRAMRMPVKYAEDANKLVQGALTANTIELTRKTVGHWVRKIGSIWPFVKYL 368
Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCK 389
IF ++ + FI + D+ + G D+ K GI PGK +
Sbjct: 369 IFDQSEFDKCENNLFKFITE--QDLTTCYDMKCLINGKDLAKLLGIKPGKGFQVHVDELI 426
Query: 390 QEWINSSFQLSQEDLHHLLR 409
+ + +++D + ++
Sbjct: 427 DWQLENP-NGTKDDYENYIK 445
>gi|50306057|ref|XP_452990.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642123|emb|CAH01841.1| KLLA0C17688p [Kluyveromyces lactis]
Length = 489
Score = 96.1 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 69/437 (15%), Positives = 135/437 (30%), Gaps = 64/437 (14%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRI----FSKTRYKVIPTS--------- 74
+ I GG VRD L+ D+DIA + ++ +
Sbjct: 41 ARITGGWVRDKLLGNDSNDLDIAINNMTGEQFAEKLCAFLQDRGLETHSLHTIDKNPSKS 100
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
T D LRS+ T V D++RRD T+NA++ +
Sbjct: 101 KHLETCTTKLFDVPVDFVNLRSEEYTMESRIPKVEFGTPYDDAMRRDATLNAMFYNITED 160
Query: 135 VIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVAS 190
I+ G DL + ++ ++D LR+LR RF + + + +
Sbjct: 161 KIEDFTKKGFQDLNDGILRTPLPPRQTFIDDPLRVLRLIRFASRFNFQIDPQTYQAMRDP 220
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ--LSQ 248
+ +S R+++E++K L + NP A+ + + + IF + +
Sbjct: 221 GIHQSFNHKISKGRVYTEMHKTLTSANPFYALDLIQGAHLSRVIFTTNESSPEIESIYEN 280
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE------------------ 290
+ + + I LL+ + + L
Sbjct: 281 LDQHLKSLVETIPKLLKSHTTFASVFPGMQEPLILSLVLSGFKGLKGPDPAKPKNSIPLA 340
Query: 291 --IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
I ++F N + + L + + + ++ AL Q F
Sbjct: 341 GVITKEGLNFPNTQVDNVIACVESEDSYHNLVKNGKSMKRSELGFALRKLGKNWQMVHFY 400
Query: 349 LQVLSDIIHWKKPLF----------------------PLTGDDVVK-YGIPPGKKVGNIL 385
L + H +P+ + G ++ K PG +G L
Sbjct: 401 NLCLDYLRHGDEPIPHYDEFYKHVHDCKLDDVYTLKHIINGKELAKLLDRKPGIWMGETL 460
Query: 386 VHCKQEWINSSFQLSQE 402
+++ +S+E
Sbjct: 461 DRILIWQLDNP-DISKE 476
>gi|170718506|ref|YP_001783718.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Haemophilus somnus 2336]
gi|168826635|gb|ACA32006.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Haemophilus somnus 2336]
Length = 417
Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 70/347 (20%), Positives = 125/347 (36%), Gaps = 24/347 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L ++D D + ++ + K P + K
Sbjct: 3 QIYLVGGAVRDQLLGLPIKDRDWLVVGSTAEELLSQGYQQVGKDFPVF--------LNPK 54
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D +RRD TINA+ D G+ D G+
Sbjct: 55 TREEYALARTERKSGTGYTGFICDFNPNITLEQDLMRRDLTINAIAQDMAGQYHDPYNGI 114
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+ ++ I ED LR+LR RF A Y + + I L+
Sbjct: 115 ADLKKGILRHI---SPAFAEDPLRVLRVARFAARYHQLGFKIAPDTLALMKKIANNGELR 171
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
LS ER+W E K L ++P + K + ++ + D + Q F
Sbjct: 172 QLSPERVWQETEKALHEQDPQVYFAILQKIDALKVLCPEISVFNSDSI-QYRSDMTDFVH 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ L + +L D + + + K SI ++ +
Sbjct: 231 AMPILKQTTLLTEKTDYHKSAVRFAALCHDVGKALSTANIPPYSHDNKITSIAYLRNVCQ 290
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362
+ + +L +++++ H T IL + + + W+KP
Sbjct: 291 RFKVPNYVQELAELTCQYHSHIHHALALHTKTILTLFNKLDVWRKPK 337
>gi|94968964|ref|YP_591012.1| polynucleotide adenylyltransferase [Candidatus Koribacter
versatilis Ellin345]
gi|94551014|gb|ABF40938.1| Polynucleotide adenylyltransferase [Candidatus Koribacter
versatilis Ellin345]
Length = 567
Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 54/372 (14%), Positives = 117/372 (31%), Gaps = 16/372 (4%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ I + + + GGA+RD L ++DID+ P ++ + K V
Sbjct: 16 QQKAVNLITDVARAHDMNIYLTGGALRDLLTGFPIRDIDLTVQGNPFKLQKDLEKAGAAV 75
Query: 71 IPTSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
T T+ ++ +++ RS V D RRDFT+NA+
Sbjct: 76 HGTEEDSKTLHLLLPGNVRVEVSMSRSATYEKPGKPPKVEPATINEDLRRRDFTVNAMAL 135
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEK-NIDSDG 186
+ + + ++ E+ R+LR RF A + +
Sbjct: 136 SLNPGSKGLLADPFNGVADIELKVLRILHNYAFYEEPSRLLRAVRFAARFHWPLEERTQA 195
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD-----VQEI 241
+ K ++ ++ + + E+ ++ NP+ + M G K + ++
Sbjct: 196 RYDAAKENSYIEYINKDAVGYELEQVAREDNPIEIVRAMEKEGWLKVLHPHWTVAKLESP 255
Query: 242 SLDQLSQVIEAEQVFEWKID-------SLLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294
L QL +V + F +D + R + D + + + +
Sbjct: 256 ELTQLLKVRQQMLDFGINVDASPAVMYFMTRKLGDKDIADIQKQIPRRDFVHSWKHLDDG 315
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
++ ++ KL + ++ I + QV
Sbjct: 316 AKDLAKRLSGKEANTVSGTWKLLSSASPEALLFLAIIGRNASVQDKIKNFFGKWRQVREK 375
Query: 355 IIHWKKPLFPLT 366
+ + +T
Sbjct: 376 LPFPEMAELLIT 387
>gi|33152215|ref|NP_873568.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Haemophilus ducreyi 35000HP]
gi|73619776|sp|Q9L7A3|CCA_HAEDU RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|6760461|gb|AAF28362.1|AF224467_1 tRNA nucleotidyltransferase [Haemophilus ducreyi]
gi|33148437|gb|AAP95957.1| tRNA nucleotidyltransferase [Haemophilus ducreyi 35000HP]
Length = 412
Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 68/348 (19%), Positives = 120/348 (34%), Gaps = 24/348 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+NL ++D D ++ + P +
Sbjct: 2 QIYLVGGAVRDQLLNLPIKDRDFLVVGATAKELINQGYQQVGADFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141
+ R + G + D +RRD TINA+ D G++ D GG
Sbjct: 54 TQQEYALARQERKSGTGYTGFVCDFSPNVTLEQDLIRRDLTINAMAQDLTSGQIFDPFGG 113
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGL 197
DL NR ++ I ED LR+LR RF A + + + A L
Sbjct: 114 KTDLANRLLRHI---SDAFAEDPLRVLRVARFAARFHHLGFSIAEQTLELMQKMTACGEL 170
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
L++ERIW E K L ++P + +F ++ ++ S E
Sbjct: 171 NHLTAERIWRETEKALHTESPHIYFQVLRKVNALAILFPEIDQLFGQIQSVKYHLETDRG 230
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
L+ L+ Q + ++ I +L
Sbjct: 231 QHTLLALQQAKLLVKQAHNPTALLWAVLCHDLGKDLISAEMLPHHYQPNVTGIQLTHQLA 290
Query: 318 YLYGDKVMIAKLKIFLALHYNN---LTHQDTCFILQVLSDIIHWKKPL 362
+ +L + + ++ N + D+ +L++ + + W+KP
Sbjct: 291 DRLKVPTAVKELALLVNKYHTNCHKIAELDSERVLELFNQLDVWRKPQ 338
>gi|261856284|ref|YP_003263567.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Halothiobacillus neapolitanus c2]
gi|261836753|gb|ACX96520.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Halothiobacillus neapolitanus c2]
Length = 412
Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 109/344 (31%), Gaps = 27/344 (7%)
Query: 31 IVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
IVGGAVRD L+ + D D P+ + +P + + K
Sbjct: 11 IVGGAVRDRLLGRPIHDRDWVVLGSTPEAMQA------QGFLPVGHDF--PVFLHPKTRE 62
Query: 90 DITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ R++ + + F D + D RRD TINA+ G +ID DL
Sbjct: 63 EYALARTERKSGRGHQGFTFNADPKVTLEDDLQRRDLTINAMAQTADGTLIDPFDFKRDL 122
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE-- 203
+R ++ +G A ED LR+LR RF A + ++
Sbjct: 123 DDRILRHVGPA---FAEDPLRVLRVARFAAQLAPLGFTLASPTRDLMQAMTNAGELNDLT 179
Query: 204 --RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
R+W E +K L + P + + G +F +V + + E
Sbjct: 180 AERVWQETHKALASPAPARYFDILRDVGALAVLFPEVDALFGVPQPEKYHPEIDSGVHTL 239
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L ++ + + + + + L
Sbjct: 240 LALTAAAKLTDDVGIRFAVLCHDL----GKALTPSDEWPRHIGHEARGVAPATALSDRLR 295
Query: 322 DKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362
I +L I + + + H ++ ++ + ++P
Sbjct: 296 VPKAIKELAILVTAQHGRVHHALEMKPATLVDLIESLDGLRRPE 339
>gi|165976336|ref|YP_001651929.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|165876437|gb|ABY69485.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 412
Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 66/347 (19%), Positives = 119/347 (34%), Gaps = 23/347 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+NL V+D D + P++++ + P + K
Sbjct: 27 QIYLVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVF--------LHPK 78
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R + +G + D +RRD TINA+ D G++ D GG
Sbjct: 79 TKEEYALARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGK 138
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL NR ++ I ED LR+LR RF A + + + A L
Sbjct: 139 QDLANRLLRHI---SPAFSEDPLRVLRVARFAARFHSLGFKIAPETVKLMQEMTACGELA 195
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E K NP + G +F + + + E
Sbjct: 196 HLTAERVWLETQKAFATDNPQIYFEVLREIGALAVLFPEFDRLFGVPQPEQHHPEIDSGV 255
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
++ ++ + + ++ + + ++L
Sbjct: 256 HTLLVIEQAKRLAKNAENPTALLWAALCHDLGKGLTEKDILPHHYGHEVKGVKPARELSN 315
Query: 319 LYGDKVMIAKLKIF---LALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ I H + + +L+V + + W+KP
Sbjct: 316 RLKVSTDVKDFAILVTEYHTHCHKMAELRPETVLKVFNALDIWRKPQ 362
>gi|127511941|ref|YP_001093138.1| metal dependent phosphohydrolase [Shewanella loihica PV-4]
gi|166233878|sp|A3QBN1|CCA_SHELP RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|126637236|gb|ABO22879.1| metal dependent phosphohydrolase [Shewanella loihica PV-4]
Length = 413
Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 125/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+N+ ++D D + ++ + K P + K
Sbjct: 2 KIYLVGGAVRDQLLNIPIKDRDYMVVGATVQEMLDKGYRQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ T Y + D LRRD TINA+ D+ G+V D GG
Sbjct: 54 TQQEYALARTERKTGVGYGGFSVYAAPDVTLEEDLLRRDLTINAIAQDETGRVFDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
D+ R ++ + +ED LR+LR RF A + ++ +
Sbjct: 114 ADIEQRLLRHV---SDAFVEDPLRVLRVARFAARFQPLGFKVAPETMALMQRIAASGELE 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER++ E++K L + P + G +F +++ + + E
Sbjct: 171 ALTPERVFQELDKALSTEAPQVFFEVLREAGGLAILFPEIEALFGIPQPEQWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L +S + ++ + + + + + I + + F
Sbjct: 231 HTLMVLEQAARLSQDKQVRFAALVHDLGKALSPKEH-LPKHHGHGQKGLPLIRALCERFR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ D +A L + +N ++++ W+KP
Sbjct: 290 VPNDYRDLALLVSDQHQNIHNAFELRAETMVKLFDKADLWRKPE 333
>gi|320352799|ref|YP_004194138.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfobulbus propionicus DSM 2032]
gi|320121301|gb|ADW16847.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfobulbus propionicus DSM 2032]
Length = 508
Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 77/495 (15%), Positives = 150/495 (30%), Gaps = 109/495 (22%)
Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM-RIFSKTR 67
W ++ L + + + GG VRD L QDID+A ++ T
Sbjct: 20 WLR----RHLADLSRQMGGELYLAGGVVRDLLRGSVPQDIDLAVDSGARIWAGKLAVLTG 75
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+ +++ RK+ D + R R + +RRD T+NA+
Sbjct: 76 GTYVALGRDEDAARVVSRKRIVDFASFR------------QGARTIAEELVRRDLTVNAM 123
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIG------------DAHHRILEDYLRILRFFRFFA 175
++ + G + D LR+LR FRF A
Sbjct: 124 AIRLDP-LLRLPEADGPSEVPLLDPTGGRDDLEQGLIRVASRESFTSDPLRLLRVFRFAA 182
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G +++ L + + L + + ER+ E++ ++ N V M + G+ EI
Sbjct: 183 TLGF-AVEAGTLELIRRQRALLALSAPERVAHELDLIMATDNSHAVFVQMADIGLLWEIL 241
Query: 236 LDVQ-------------EISLDQLSQVIEAEQVFEWKIDSL------------------- 263
+++ ++ L + EQ+ + L
Sbjct: 242 PELKAGIGMEQPRSHHLDVWQHNLETLRWMEQILQAPEQWLAEGGERLMTYLRSPQQCRR 301
Query: 264 LRFIVLISWQDKKS------------------------ILSMAKKFSLPREIRYFLISFF 299
LR+ L+ K + +A + E R +
Sbjct: 302 LRWAALLHDLGKPATHAVRADKGDRITFYNHDRVGAELFREVALRLRWSGEDRERVAHLI 361
Query: 300 NCNFNQKT---------LSIPEIKKLFYLYGDK---VMIAKLKIFLALHYNNLTHQDTCF 347
+ + L++ ++ G + + L LA
Sbjct: 362 EGHMHPFHLANVARDGKLTLRASIRMVRKAGTDLPGLFLLALADSLAGQGEERIEGMEAE 421
Query: 348 ILQVLSDIIHWKK--------PLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQ 398
+ + + + LTG D+++ G+ PG IL ++ +
Sbjct: 422 LAGLYRRLEQVRVEHVEPVQTAPPLLTGRDLIEGLGLRPGPMFKRILGAVEEARMEGRLT 481
Query: 399 LSQEDLHHLLRKLIA 413
+ E L L R++ A
Sbjct: 482 DTDEAL-QLAREMAA 495
>gi|78778529|ref|YP_396641.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT
9312]
gi|78712028|gb|ABB49205.1| poly A polymerase family [Prochlorococcus marinus str. MIT 9312]
Length = 406
Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 69/389 (17%), Positives = 123/389 (31%), Gaps = 30/389 (7%)
Query: 30 CIVGGAVRDSLMNLSVQ--DIDIATTILPDRV-MRIFSKTRYKVIPTSISYGTIKIICRK 86
+VGG +RD ++ + D+DI + + +I K I +++I
Sbjct: 38 FLVGGYIRDIILGRLTEDVDVDIVVPLNAIEIGKKISDNFESKFIILDKKREVVRVILDH 97
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146
DI + + D RDF+IN++ K +
Sbjct: 98 ISIDIA--------------NQISSTIEGDLSSRDFSINSIAFLFDNKCLFDPFNGLKDL 143
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
++ ++ D LRILR FRF + + K K + +
Sbjct: 144 ESSLLRTHS-EKNLMNDPLRILRCFRFVSEFNFKIDQDLITYIKKNKGKLYFVAKERINY 202
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
I K++ N L AI+ + N IF L LD + E +E K F
Sbjct: 203 E-IQKIVTGANALEAIILVKNFNIFGSDNLYKDSFFLDLQNINYEELNQYEKKNFLPFFF 261
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
I I K+ R + K +I ++ +L + +
Sbjct: 262 ITQILD------EVSLSKYKFSRAEIVRTKLLRKWHVFLKKKNITQLNELDRFALHQELE 315
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385
L F+ L ++ + P + GD + K I G +G +L
Sbjct: 316 MFLPSFIFYLPQKLR---FDWLNRWRDKDDRLFHPSNLINGDVIKKNLKIKDGPLLGKLL 372
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ +E E + + ++ I
Sbjct: 373 QYLSKELAYKRLNNFDEAI-YKAKQWIEQ 400
>gi|163783310|ref|ZP_02178303.1| poly A polymerase [Hydrogenivirga sp. 128-5-R1-1]
gi|159881418|gb|EDP74929.1| poly A polymerase [Hydrogenivirga sp. 128-5-R1-1]
Length = 513
Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 79/485 (16%), Positives = 155/485 (31%), Gaps = 103/485 (21%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSKTRYKVIPTS 74
I +L + + IVGG VRD ++ V D+D T P ++ + F++
Sbjct: 26 IAKVLPREDY-CFIVGGWVRDRILGEPVGHNIDVDFLVTCDPVKIAQDFAERTGGHFFVF 84
Query: 75 ISYG-------TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
G ++ + R K + + D RDFT NA+
Sbjct: 85 EKKGLLIKRPVVASVVIH-----LPPYRYRFDFSQVKGKDLEKALVE-DLKERDFTANAI 138
Query: 128 YADQQG---------KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
+ V D GG+ D+ ++ I + + R D +RILR FR
Sbjct: 139 AVNLDDVLSIGAKQTVVFDPTGGIKDMEQGLLRPISEENLR--RDPVRILRGFRLSVEK- 195
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD- 237
E + D ++ + +ERI E+ K+++ + +Y G+ +E+F +
Sbjct: 196 ELKLTEDFYRFVEVNRRLVTKAPAERITHELFKVMKHPRASKVVRKLYEVGLLEEVFPEF 255
Query: 238 -------------VQEISLDQLSQVIEAEQVFEWKIDS---------------------- 262
+ + L + E E+V E +
Sbjct: 256 AKLRNIKDQGEHHIYPLDEHTLKILEEVEKVIEERTKYLSVELLGDFGCRRFLGEFTDVE 315
Query: 263 LLRFIVLISWQDKKS---------------------ILSMAKKFSLPREIRYFLISFFNC 301
LL++ L+ K + + K+ F+
Sbjct: 316 LLKWGALLHDIGKPDTYAIKDGKVTFYNHDKVGEEIVKRIGKRLKWGEPATRFIGKLVRY 375
Query: 302 NFNQKTLSIPE---------IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
+ L + + GD L + T ++ +L+ +
Sbjct: 376 HLRPFYLRESFLRGELKRKGMANFWKECGDIAPHLFLLSIADAFASGDTEEEVKALLETI 435
Query: 353 SDIIHWK-------KPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
S++ +K + L G +++ I GK VG I ++ + S + +E +
Sbjct: 436 SELESFKRNELTEERVKPLLNGHEIMAILNITQGKMVGEIKRRLEEAQMEGSMRTREEAV 495
Query: 405 HHLLR 409
+ +
Sbjct: 496 EFVKK 500
>gi|167031441|ref|YP_001666672.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas putida GB-1]
gi|189081875|sp|B0KJ86|CCA_PSEPG RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|166857929|gb|ABY96336.1| Polynucleotide adenylyltransferase region [Pseudomonas putida GB-1]
Length = 368
Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 70/370 (18%), Positives = 120/370 (32%), Gaps = 27/370 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGAVRD L+ V DID + ++ P + + K
Sbjct: 3 IYKVGGAVRDRLLGRPVSDIDWLVVGATVEEMLAK------GYRPVGADF--PVFLHPKT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y F + D +RRD TINA+ D+ G V D G +
Sbjct: 55 GEEYALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEAGTVYDPYHGKD 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS- 202
DL R ++ + ED LR+LR RF A Y + +
Sbjct: 115 DLDQRLLRHV---SPAFAEDPLRVLRVARFAARYAPLGFRVADETLELMRQISASGELQA 171
Query: 203 ---ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE--ISLDQLSQVIEAEQVFE 257
ER W EI + L P + G E+ ++ + +L L Q EQ
Sbjct: 172 LTAERSWKEIERALMEARPQVFFQVLGACGALHELLPELVDDTQALAALEQAAAHEQPLH 231
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ LLR + + L ++ + ++ N ++ E+ + F
Sbjct: 232 VRWACLLRGLAPAPIKTVNQRLKAPRECQELALLTGECLAQGNQAQELPATALLELLQKF 291
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
+Y + + + + +V+ G+
Sbjct: 292 DVYRRPQRFEDFIVVCEMAALGDGKSSYP----QADYLRGAAAAARAVDVKPLVQAGLT- 346
Query: 378 GKKVGNILVH 387
G+ +G L
Sbjct: 347 GQALGEALKR 356
>gi|53717906|ref|YP_106892.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia pseudomallei K96243]
gi|126451805|ref|YP_001064555.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia pseudomallei 1106a]
gi|162210101|ref|YP_331871.2| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia pseudomallei 1710b]
gi|167813789|ref|ZP_02445469.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia pseudomallei 91]
gi|167843896|ref|ZP_02469404.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia pseudomallei B7210]
gi|167892398|ref|ZP_02479800.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia pseudomallei 7894]
gi|167909113|ref|ZP_02496204.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia pseudomallei 112]
gi|217425090|ref|ZP_03456586.1| multifunctional CCA protein [Burkholderia pseudomallei 576]
gi|242314343|ref|ZP_04813359.1| multifunctional CCA protein [Burkholderia pseudomallei 1106b]
gi|254188077|ref|ZP_04894589.1| multifunctional CCA protein [Burkholderia pseudomallei Pasteur
52237]
gi|254260529|ref|ZP_04951583.1| multifunctional CCA protein [Burkholderia pseudomallei 1710a]
gi|254295806|ref|ZP_04963263.1| multifunctional CCA protein [Burkholderia pseudomallei 406e]
gi|73619760|sp|Q63YC3|CCA_BURPS RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|166233848|sp|A3NQD4|CCA_BURP0 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|52208320|emb|CAH34253.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei K96243]
gi|126225447|gb|ABN88987.1| multifunctional CCA protein [Burkholderia pseudomallei 1106a]
gi|157805662|gb|EDO82832.1| multifunctional CCA protein [Burkholderia pseudomallei 406e]
gi|157935757|gb|EDO91427.1| multifunctional CCA protein [Burkholderia pseudomallei Pasteur
52237]
gi|217392110|gb|EEC32136.1| multifunctional CCA protein [Burkholderia pseudomallei 576]
gi|242137582|gb|EES23984.1| multifunctional CCA protein [Burkholderia pseudomallei 1106b]
gi|254219218|gb|EET08602.1| multifunctional CCA protein [Burkholderia pseudomallei 1710a]
Length = 413
Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 68/350 (19%), Positives = 120/350 (34%), Gaps = 31/350 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGA+RD+L+ L V+D D + P+++ + P + +
Sbjct: 2 KIYAVGGAIRDALLGLPVRDRDYVVVGATPEQMAA------QRFRPVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VI 136
+ + R++ T Y F + D +RRD TINA+ + V+
Sbjct: 54 THEEYALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVV 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK- 195
D GG DLR + + +GDA +ED +RILR RF A + E + D
Sbjct: 114 DPFGGQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALMRAMVDA 170
Query: 196 -GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W E+ + L P + G I ++ + E
Sbjct: 171 GEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALARILPEIDALFGVPQRADYHPEV 230
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ ++ S+ + + + S+ +K
Sbjct: 231 DTGVHVMMVIDHAAKQG----YSLAVRFAALTHDLGKATTPADVLPRHIGHEGRSVDLLK 286
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++L +KP
Sbjct: 287 PLCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRLLERADALRKP 336
>gi|254230374|ref|ZP_04923758.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Vibrio sp. Ex25]
gi|262392388|ref|YP_003284242.1| tRNA nucleotidyltransferase [Vibrio sp. Ex25]
gi|151937112|gb|EDN55986.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Vibrio sp. Ex25]
gi|262335982|gb|ACY49777.1| tRNA nucleotidyltransferase [Vibrio sp. Ex25]
Length = 406
Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + D D P+ ++ K P + K
Sbjct: 2 QVYLVGGAVRDKLLGIDSYDNDWVVVGATPETMLSQGYTAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D +RRD TINA+ D GK+ D GG
Sbjct: 54 SKEEHALARTERKSGSGYTGFECFFDQSVTLEEDLIRRDLTINAMAMDDAGKLHDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL ++ ++ + +ED LR+LR RF A + N +
Sbjct: 114 KDLNDKLLRHV---SDAFIEDPLRVLRVARFAAKLADLNFTVADETMQLMRHMAESGELS 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E +K L P + + + G + ++ + E
Sbjct: 171 TLTPERVWQEWHKSLSTPRPDIFLSVLRDCGALAVVLPEIDALFGVPQPAKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ +S + + + I ++ +
Sbjct: 231 HTLMVAEQAARLSDSLPVRFAAQVHDLGKG-VTPESEWPSHRMHCHTGLKLIKKLCERVR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A + + + I+++L+ W+K
Sbjct: 290 VPNEFRDLALMVCEQHSNIHRAAELKPQTIIKILNKFDVWRKAE 333
>gi|167854710|ref|ZP_02477489.1| aspartate kinase III [Haemophilus parasuis 29755]
gi|167854124|gb|EDS25359.1| aspartate kinase III [Haemophilus parasuis 29755]
Length = 424
Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 65/346 (18%), Positives = 126/346 (36%), Gaps = 23/346 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD L+ L+V+D D P++++ + P + K
Sbjct: 8 IYLVGGAVRDQLLGLAVKDRDWLIVGATPEQLLAQGYQQVGNDFPVF--------LHPKT 59
Query: 88 YFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ +G + D +RRD TINA+ D G D+ GG+
Sbjct: 60 KEEYALARTERKNGNGYNGFICDFTPEVTLEQDLIRRDLTINAIAQDLDGNYHDFYGGIA 119
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL++R ++ + ED LR+LR RF A + + + A L
Sbjct: 120 DLKHRLLRHV---SPAFAEDPLRVLRVARFAARFHSLGFRIAPETVKLMQEMTACGELAH 176
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L++ER+W E K P + G K +F +V+ + + E
Sbjct: 177 LTAERVWLETQKAFATDTPHIYFQVLREVGALKVLFPEVEALFGVPQPEKHHPEIDSGIH 236
Query: 260 IDSLL---RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+L + + + + + + + ++ + + ++
Sbjct: 237 TLMVLEQAKKLAVQANDPESVLFAALCHDLGKALTPKDILPHHYGHEQKGVAPTEQLANR 296
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ AKL H + +T ++++ + + W+KP
Sbjct: 297 LKVQAHTKAFAKLVTEFHTHSHKITELRPETVVKLFNKLDVWRKPE 342
>gi|126440528|ref|YP_001057313.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia pseudomallei 668]
gi|134283564|ref|ZP_01770263.1| multifunctional CCA protein [Burkholderia pseudomallei 305]
gi|166233849|sp|A3N4P2|CCA_BURP6 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|126220021|gb|ABN83527.1| multifunctional CCA protein [Burkholderia pseudomallei 668]
gi|134244973|gb|EBA45068.1| multifunctional CCA protein [Burkholderia pseudomallei 305]
Length = 413
Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 68/350 (19%), Positives = 120/350 (34%), Gaps = 31/350 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGA+RD+L+ L V+D D + P+++ + P + +
Sbjct: 2 KIYAVGGAIRDALLGLPVRDRDYVVVGATPEQMAA------QRFRPVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VI 136
+ + R++ T Y F + D +RRD TINA+ + V+
Sbjct: 54 THEEYALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVV 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK- 195
D GG DLR + + +GDA +ED +RILR RF A + E + D
Sbjct: 114 DPFGGQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALMRAMVDA 170
Query: 196 -GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W E+ + L P + G I ++ + E
Sbjct: 171 GEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALARILPEIDALFGVPQRADYHPEV 230
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ ++ S+ + + + S+ +K
Sbjct: 231 DTGVHVMMVIDHAAKQG----YSLPVRFAALTHDLGKATTPADVLPRHIGHEGRSVDLLK 286
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++L +KP
Sbjct: 287 PLCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRLLERADALRKP 336
>gi|53724555|ref|YP_104787.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia mallei ATCC 23344]
gi|67641531|ref|ZP_00440308.1| multifunctional CCA protein [Burkholderia mallei GB8 horse 4]
gi|121600304|ref|YP_994281.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia mallei SAVP1]
gi|124385062|ref|YP_001028069.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia mallei NCTC 10229]
gi|126448131|ref|YP_001082877.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia mallei NCTC 10247]
gi|167001524|ref|ZP_02267319.1| multifunctional CCA protein [Burkholderia mallei PRL-20]
gi|167822306|ref|ZP_02453777.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia pseudomallei 9]
gi|167900894|ref|ZP_02488099.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia pseudomallei NCTC 13177]
gi|226199762|ref|ZP_03795313.1| multifunctional CCA protein [Burkholderia pseudomallei Pakistan 9]
gi|254175171|ref|ZP_04881832.1| multifunctional CCA protein [Burkholderia mallei ATCC 10399]
gi|254182147|ref|ZP_04888744.1| multifunctional CCA protein [Burkholderia pseudomallei 1655]
gi|254196211|ref|ZP_04902635.1| multifunctional CCA protein [Burkholderia pseudomallei S13]
gi|254201889|ref|ZP_04908253.1| multifunctional CCA protein [Burkholderia mallei FMH]
gi|254207222|ref|ZP_04913573.1| multifunctional CCA protein [Burkholderia mallei JHU]
gi|254359725|ref|ZP_04975996.1| multifunctional CCA protein [Burkholderia mallei 2002721280]
gi|73619759|sp|Q62EU1|CCA_BURMA RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|166233845|sp|A3MRJ1|CCA_BURM7 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|166233846|sp|A2S800|CCA_BURM9 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|166233847|sp|A1V7S8|CCA_BURMS RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|52427978|gb|AAU48571.1| tRNA nucleotidyltransferase [Burkholderia mallei ATCC 23344]
gi|121229114|gb|ABM51632.1| tRNA nucleotidyltransferase [Burkholderia mallei SAVP1]
gi|124293082|gb|ABN02351.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10229]
gi|126241001|gb|ABO04094.1| multifunctional CCA protein [Burkholderia mallei NCTC 10247]
gi|147747783|gb|EDK54859.1| multifunctional CCA protein [Burkholderia mallei FMH]
gi|147752764|gb|EDK59830.1| multifunctional CCA protein [Burkholderia mallei JHU]
gi|148028939|gb|EDK86871.1| multifunctional CCA protein [Burkholderia mallei 2002721280]
gi|160696216|gb|EDP86186.1| multifunctional CCA protein [Burkholderia mallei ATCC 10399]
gi|169652954|gb|EDS85647.1| multifunctional CCA protein [Burkholderia pseudomallei S13]
gi|184212685|gb|EDU09728.1| multifunctional CCA protein [Burkholderia pseudomallei 1655]
gi|225928113|gb|EEH24149.1| multifunctional CCA protein [Burkholderia pseudomallei Pakistan 9]
gi|238522479|gb|EEP85923.1| multifunctional CCA protein [Burkholderia mallei GB8 horse 4]
gi|243062728|gb|EES44914.1| multifunctional CCA protein [Burkholderia mallei PRL-20]
Length = 413
Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 68/350 (19%), Positives = 120/350 (34%), Gaps = 31/350 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGA+RD+L+ L V+D D + P+++ + P + +
Sbjct: 2 KIYAVGGAIRDALLGLPVRDRDYVVVGATPEQMAA------QRFRPVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VI 136
+ + R++ T Y F + D +RRD TINA+ + V+
Sbjct: 54 THEEYALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVV 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK- 195
D GG DLR + + +GDA +ED +RILR RF A + E + D
Sbjct: 114 DPFGGQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALMRAMVDA 170
Query: 196 -GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W E+ + L P + G I ++ + E
Sbjct: 171 GEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALARILPEIDALFGVPQRADYHPEV 230
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ ++ S+ + + + S+ +K
Sbjct: 231 DTGVHVMMVIDHAAKQG----YSLPVRFAALTHDLGKATTPADVLPRHIGHEGRSVDLLK 286
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++L +KP
Sbjct: 287 PLCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRLLERADALRKP 336
>gi|312963427|ref|ZP_07777909.1| Multifunctional CCA protein [Pseudomonas fluorescens WH6]
gi|311282233|gb|EFQ60832.1| Multifunctional CCA protein [Pseudomonas fluorescens WH6]
Length = 409
Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 74/406 (18%), Positives = 129/406 (31%), Gaps = 59/406 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGAVRD L+ ++V DID + + ++ P + + K
Sbjct: 2 KIYKVGGAVRDRLLGITVTDIDRVVVGATTEEMLAK------GFKPVGADF--PVFLDPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y VF + D +RRD TINA+ D G + D G
Sbjct: 54 NGDEYALARTERKSGRGYGGFVFHASPEVTLEEDLIRRDLTINAMAQDDDGNLTDPYHGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL R ++ + ED LR+LR RF A Y + +
Sbjct: 114 RDLEARILRHV---SPAFAEDPLRVLRVARFCARYAHLGFTVAPETLELMRQLSESGELE 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER W EI++ L P I + + K + +V + + E
Sbjct: 171 ALTPERSWKEISRALMENQPQVFIQVLRDCHALKTLMPEVDALFGVPQPEAHHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
S+L + Q + + + + I I + F
Sbjct: 231 HTLSVL-EQAALHNQPLTVRWACLLHDVGKGLTPVDKLPQHIAHEHTGLKLIKAINERFK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPL--------- 365
+ D +A L H + +L++L +++P F +
Sbjct: 290 VPRDCQELALLVGQYHTHGHRALELKASTLLELLQSFDVYRRPQRFEEFVVACEMDARGR 349
Query: 366 TGDD------------------------VVKYGIPPGKKVGNILVH 387
G + +++ G G ++G L
Sbjct: 350 KGFEQRSYPQADYLRGAARAAREVAVAPLLEKGFK-GPQLGEALKR 394
>gi|237810451|ref|YP_002894902.1| multifunctional CCA protein [Burkholderia pseudomallei MSHR346]
gi|237506472|gb|ACQ98790.1| multifunctional CCA protein [Burkholderia pseudomallei MSHR346]
Length = 413
Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 68/350 (19%), Positives = 120/350 (34%), Gaps = 31/350 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGA+RD+L+ L V+D D + P+++ + P + +
Sbjct: 2 KIYAVGGAIRDALLGLPVRDRDYVVVGATPEQMAA------QRFRPVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VI 136
+ + R++ T Y F + D +RRD TINA+ + V+
Sbjct: 54 THEEYALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVV 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK- 195
D GG DLR + + +GDA +ED +RILR RF A + E + D
Sbjct: 114 DPFGGQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALMRAMVDA 170
Query: 196 -GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W E+ + L P + G I ++ + E
Sbjct: 171 GEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALARILPEIDALFGVPQRAGYHPEV 230
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ ++ S+ + + + S+ +K
Sbjct: 231 DTGVHVMMVIDHAAKQG----YSLAVRFAALTHDLGKATTPADVLPRHIGHEGRSVDLLK 286
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++L +KP
Sbjct: 287 PLCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRLLERADALRKP 336
>gi|167717649|ref|ZP_02400885.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia pseudomallei DM98]
Length = 401
Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 68/350 (19%), Positives = 120/350 (34%), Gaps = 31/350 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGA+RD+L+ L V+D D + P+++ + P + +
Sbjct: 2 KIYAVGGAIRDALLGLPVRDRDYVVVGATPEQMAA------QRFRPVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VI 136
+ + R++ T Y F + D +RRD TINA+ + V+
Sbjct: 54 THEEYALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVV 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK- 195
D GG DLR + + +GDA +ED +RILR RF A + E + D
Sbjct: 114 DPFGGQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALMRAMVDA 170
Query: 196 -GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W E+ + L P + G I ++ + E
Sbjct: 171 GEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALARILPEIDALFGVPQRADYHPEV 230
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ ++ S+ + + + S+ +K
Sbjct: 231 DTGVHVMMVIDHAAKQG----YSLPVRFAALTHDLGKATTPADVLPRHIGHEGRSVDLLK 286
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++L +KP
Sbjct: 287 PLCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRLLERADALRKP 336
>gi|113461336|ref|YP_719405.1| tRNA nucleotidyltransferase [Haemophilus somnus 129PT]
gi|112823379|gb|ABI25468.1| tRNA nucleotidyltransferase [Haemophilus somnus 129PT]
Length = 417
Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 69/347 (19%), Positives = 124/347 (35%), Gaps = 24/347 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L ++D D + ++ + K P +
Sbjct: 3 QIYLVGGAVRDQLLGLPIKDRDWLVVGSTAEELLSQGYQQVGKDFPVF--------LNPN 54
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D +RRD TINA+ D G+ D G+
Sbjct: 55 TREEYALARTERKSGTGYTGFICDFNPDITLEQDLMRRDLTINAIAQDMAGQYHDPYNGI 114
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+ ++ I ED LR+LR RF A Y + + I L+
Sbjct: 115 ADLKKGILRHI---SPAFAEDPLRVLRVARFAARYHQLGFKIAPNTLALMKKIANNGELR 171
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
LS ER+W E K L ++P + K + ++ + D + Q F
Sbjct: 172 QLSPERVWQETEKALHEQDPQVYFAILQKIDALKVLCPEISVFNSDSI-QYRSDMTDFVH 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ L + +L D + + + K SI ++ +
Sbjct: 231 AMPILKQTTLLTEKTDYHKSAVRFAALCHDVGKALSTANIPPYSHDNKITSIAYLRNVCQ 290
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362
+ + +L +++++ H T IL + + + W+KP
Sbjct: 291 RFKVPNYVQELAELTCQYHSHIHHALALHTKTILTLFNKLDVWRKPK 337
>gi|332529564|ref|ZP_08405520.1| metal dependent phosphohydrolase [Hylemonella gracilis ATCC 19624]
gi|332040914|gb|EGI77284.1| metal dependent phosphohydrolase [Hylemonella gracilis ATCC 19624]
Length = 426
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 61/355 (17%), Positives = 116/355 (32%), Gaps = 35/355 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+L+ L V+D D P+ + P + + +
Sbjct: 2 QIYMVGGAVRDALLGLPVKDRDWVVVGATPEAMAA------QGFTPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV------- 135
+ R++ G + D RRD T+NAL ++
Sbjct: 54 TREEHALARTERKTARGYKGFAVHAAPDVTLEQDLARRDLTLNALAVAREHCRPDGGFDP 113
Query: 136 ---IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
+D G DL R ++ + A ED +RILR RF A + + + + L +
Sbjct: 114 AQVVDPYQGRRDLEQRILRHVTPA---FREDPVRILRVARFSARFTDFQVAPETLALMGE 170
Query: 193 A--KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+ L ER+W E+++ L P + + G K + +V +
Sbjct: 171 MVEDGEVDHLVPERVWQELSRGLMEARPSRMLEVLRVCGALKRLLPEVDRLWGVPQPAEH 230
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
E + +L ++ + + S
Sbjct: 231 HPEVDTGVHLMLVLDLAAELNAPLPVRY----ACLGHDLGKGTTPADVLPRHLGHEGRSA 286
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKPL 362
++ + V +L +A + N+ + +L++L +KP
Sbjct: 287 RLLQGISERLRVPVDCRELGEVVAREHGNIHASGKLNAEAVLRLLERCDALRKPE 341
>gi|322514670|ref|ZP_08067698.1| multifunctional CCA protein [Actinobacillus ureae ATCC 25976]
gi|322119368|gb|EFX91477.1| multifunctional CCA protein [Actinobacillus ureae ATCC 25976]
Length = 424
Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 68/347 (19%), Positives = 119/347 (34%), Gaps = 23/347 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+NL V+D D + P++++ + P + K
Sbjct: 2 QIYLVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R + +G + D +RRD TINA+ D G++ D GG
Sbjct: 54 TKEEYALARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL N ++ I ED LR+LR RF A + + + A L
Sbjct: 114 QDLANHLLRHI---SPAFSEDPLRVLRVARFSARFHSLGFKIAPETVKLMQEMTACGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E K NP + G +F ++ + E
Sbjct: 171 HLTAERVWLETQKAFATDNPQIYFEVLREIGALSVLFPELDRLFGVPQPPQHHPEIDSGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
++ ++ K + F ++ + I ++L
Sbjct: 231 HSLLVIEQAKRLAKNAKNPTALLWAAFCHDLGKGLTEKEILPHHYGHEVKGIKPARELSN 290
Query: 319 LYGDKVMIAKLKIF---LALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ I H + + +L+V + + W+KP
Sbjct: 291 RLKVPTDVKDFAILVTEYHTHCHKMAELRPETVLKVFNALDVWRKPQ 337
>gi|167736690|ref|ZP_02409464.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia pseudomallei 14]
Length = 377
Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 68/350 (19%), Positives = 120/350 (34%), Gaps = 31/350 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGA+RD+L+ L V+D D + P+++ + P + +
Sbjct: 2 KIYAVGGAIRDALLGLPVRDRDYVVVGATPEQMAA------QRFRPVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VI 136
+ + R++ T Y F + D +RRD TINA+ + V+
Sbjct: 54 THEEYALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSTDGALVGPVV 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK- 195
D GG DLR + + +GDA +ED +RILR RF A + E + D
Sbjct: 114 DPFGGQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALMRAMVDA 170
Query: 196 -GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W E+ + L P + G I ++ + E
Sbjct: 171 GEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALARILPEIDALFGVPQRADYHPEV 230
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ ++ S+ + + + S+ +K
Sbjct: 231 DTGVHVMMVIDHAAKQG----YSLAVRFAALTHDLGKATTPADVLPRHIGHEGRSVDLLK 286
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++L +KP
Sbjct: 287 PLCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRLLERADALRKP 336
>gi|32033553|ref|ZP_00133880.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126208391|ref|YP_001053616.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Actinobacillus pleuropneumoniae L20]
gi|190150244|ref|YP_001968769.1| Multifunctional CCA protein [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303251226|ref|ZP_07337404.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307245829|ref|ZP_07527915.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307247905|ref|ZP_07529940.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|307250159|ref|ZP_07532119.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|307252542|ref|ZP_07534438.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307254802|ref|ZP_07536629.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307263583|ref|ZP_07545198.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
gi|166233838|sp|A3N0S5|CCA_ACTP2 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702031|sp|B3GXR2|CCA_ACTP7 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|126097183|gb|ABN74011.1| Multifunctional CCA protein [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|189915375|gb|ACE61627.1| Multifunctional CCA protein [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|302649768|gb|EFL79946.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306853531|gb|EFM85750.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306855596|gb|EFM87764.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|306857824|gb|EFM89920.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306860134|gb|EFM92151.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306862328|gb|EFM94295.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306871226|gb|EFN02955.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
Length = 411
Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 66/347 (19%), Positives = 119/347 (34%), Gaps = 23/347 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+NL V+D D + P++++ + P + K
Sbjct: 2 QIYLVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R + +G + D +RRD TINA+ D G++ D GG
Sbjct: 54 TKEEYALARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL NR ++ I ED LR+LR RF A + + + A L
Sbjct: 114 QDLANRLLRHI---SPAFSEDPLRVLRVARFAARFHSLGFKIAPETVKLMQEMTACGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E K NP + G +F + + + E
Sbjct: 171 HLTAERVWLETQKAFATDNPQIYFEVLREIGALAVLFPEFDRLFGVPQPEQHHPEIDSGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
++ ++ + + ++ + + ++L
Sbjct: 231 HTLLVIEQAKRLAKNAENPTALLWAALCHDLGKGLTEKDILPHHYGHEVKGVKPARELSN 290
Query: 319 LYGDKVMIAKLKIF---LALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ I H + + +L+V + + W+KP
Sbjct: 291 RLKVSTDVKDFAILVTEYHTHCHKMAELRPETVLKVFNALDIWRKPQ 337
>gi|307256971|ref|ZP_07538748.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306864546|gb|EFM96452.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
Length = 411
Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 66/347 (19%), Positives = 119/347 (34%), Gaps = 23/347 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+NL V+D D + P++++ + P + K
Sbjct: 2 QIYLVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R + +G + D +RRD TINA+ D G++ D GG
Sbjct: 54 TKEEYALARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL NR ++ I ED LR+LR RF A + + + A L
Sbjct: 114 QDLANRLLRHI---SPAFSEDPLRVLRVARFAARFHSLGFKIAPETVKLMQEMTACGELA 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E K NP + G +F + + + E
Sbjct: 171 HLTAERVWLETQKAFATDNPQIYFEVLREIGALAVLFPEFDRLFGVPQPEQHHPEIDSGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
++ ++ + + ++ + + ++L
Sbjct: 231 HTLLVIEQAKRLAKNAENPTALLWAALCHDLGKGLTEKDILPHHYGHEVKGVKPARELSN 290
Query: 319 LYGDKVMIAKLKIF---LALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ I H + + +L+V + + W+KP
Sbjct: 291 RLKVSTDVKDFAILVTEYHTHCHKMAELRPETVLKVFNALDIWRKPQ 337
>gi|225390411|ref|ZP_03760135.1| hypothetical protein CLOSTASPAR_04164 [Clostridium asparagiforme
DSM 15981]
gi|225043529|gb|EEG53775.1| hypothetical protein CLOSTASPAR_04164 [Clostridium asparagiforme
DSM 15981]
Length = 276
Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/250 (19%), Positives = 91/250 (36%), Gaps = 5/250 (2%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +L L ++C+ G VRD L+ + +I ++ LP + +F+ + I
Sbjct: 16 PVEPVLKRLEDFGHRACLAGDCVRDWLLGRIPEVWEILSSALPGEIAGLFAGAGMEKISI 75
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ G + + R +I +L R + F + + RRDFT+NA+ +
Sbjct: 76 NAQDGAVGLRNRHYSCEIISLSGG----SREGERDFMGCLEEELSRRDFTVNAIAYSLKD 131
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+D G DL N I +GD + + ILR R A G + A
Sbjct: 132 GFVDPFLGRADLENGIICCVGDPNRYFAGNGPAILRAVRTAALLGFRPDARLLQAAIEHR 191
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
+ + + + L +V I I ++ + Q +
Sbjct: 192 ETLAAVPADYVGGELRQIFSGCGDGLAGLVR-QTQEILLTILPELIPMVGFQQNNRYHVH 250
Query: 254 QVFEWKIDSL 263
V++ + +L
Sbjct: 251 DVWQHTLAAL 260
>gi|9836828|gb|AAG00316.1|AF207744_1 tRNA nucleotidyltransferase [Kluyveromyces lactis]
Length = 489
Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 70/437 (16%), Positives = 135/437 (30%), Gaps = 64/437 (14%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRI----FSKTRYKVIPTS--------- 74
+ I GG VRD L+ D+DIA + ++ +
Sbjct: 41 ARITGGWVRDKLLGNDSNDLDIAINNMTGEQFAEKLCAFLQDRGLETHSLHTIDKNPSKS 100
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
T D LRS+ T V D++RRD T+NA++ +
Sbjct: 101 KHLETCTTKLFDVPVDFVNLRSEEYTMESRIPKVEFGTPYDDAMRRDATLNAMFYNITED 160
Query: 135 VIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVAS 190
I+ G DL + ++ ++D LR+LR RF + + + +
Sbjct: 161 KIEDFTKKGFQDLNDGILRTPLPPRQTFIDDPLRVLRLIRFASRFNFQIDPQTYQAMRDP 220
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG------IFKEIFLDVQEISLD 244
+ +S R+++E++K L + NP A+ + E +++ I +
Sbjct: 221 GIHQSFNHKISKGRVYTEMHKTLTSANPFYALDLIQGAHLSRVIFTTNESSPEIESIYEN 280
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL----------------SMAKKFSLP 288
+ + + S F + + IL L
Sbjct: 281 LDQHLKSVVETIPKLLKSHTTFASVFPGMQEPLILSLVLSGFKGLKGPDPAKPKNSIPLA 340
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
I ++F N + + L + + + ++ AL Q F
Sbjct: 341 GVITKEGLNFPNTQVDNVIACVESEDSYHNLVKNGKSMKRSELGFALRKLGKNWQMVHFY 400
Query: 349 LQVLSDIIHWKKPLF----------------------PLTGDDVVK-YGIPPGKKVGNIL 385
L + H +P+ + G ++ K PG +G L
Sbjct: 401 NLCLDYLRHGDEPIPHYDEFYKHVHDCKLDDVYTLKHIINGKELAKLLDRKPGIWMGETL 460
Query: 386 VHCKQEWINSSFQLSQE 402
+++ +S+E
Sbjct: 461 DRILIWQLDNP-DISKE 476
>gi|46198864|ref|YP_004531.1| poly(A) polymerase/tRNA nucleotidyl transferase [Thermus
thermophilus HB27]
gi|46196487|gb|AAS80904.1| poly(A) polymerase/tRNA nucleotidyl transferase [Thermus
thermophilus HB27]
Length = 434
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 68/422 (16%), Positives = 135/422 (31%), Gaps = 61/422 (14%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ D+D A + P++ + + P G +++ ++
Sbjct: 14 AFPVGGAVRDLLLGRRPTDLDYA-ALDPEKAAEEAKRRLGGSLFPLDPKRGHYRLVVGER 72
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
D T L +GR + D LRRD+ +NAL + G V G DLR
Sbjct: 73 TLDFTPL------EGR---------LEEDLLRRDYRVNAL-LWKGGAVFGLKGVEEDLRR 116
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS----SE 203
R + + + + + +D+LR LR R A G A+ E
Sbjct: 117 RLLVPVREEN--LYQDHLRSLRGVRLAATLGFGLPRRTREALGRHARFLQAHPEALPARE 174
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL---SQVIEAEQVFEWKI 260
R+ E+ +LL + + + G+ ++ + + E
Sbjct: 175 RVKEELARLLLSPRAAFGLRLLERVGLLGVYLPELALLVGLHQGGVHHLPAWEHTLSAVF 234
Query: 261 DSLLRF--------------------------------IVLISWQDKKSILSMAKKFSLP 288
L + + + + + P
Sbjct: 235 HLLWLWPEAPLEARLAALFHDVGKPLTRRFDPEVGRFRFLGHAEVGAEIARASLFWLRFP 294
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
+E+ + + ++ +++ F D + + ++ +
Sbjct: 295 KEVVERVAGLVRRHMDRLPEERKALRRFFLRRQDLLPDLVYLMAADRLATRGVEREAWEV 354
Query: 349 LQVLSDIIHWKKPL-FPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L +++ P L+G++V+ G+ G +VG L + +E
Sbjct: 355 LGRYEEVLKDPLPQRPLLSGEEVMALLGLQEGPEVGRALKALLEAQAEGRVGTKEEARAF 414
Query: 407 LL 408
LL
Sbjct: 415 LL 416
>gi|307259243|ref|ZP_07540973.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|306866910|gb|EFM98768.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
Length = 436
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 66/347 (19%), Positives = 119/347 (34%), Gaps = 23/347 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+NL V+D D + P++++ + P + K
Sbjct: 27 QIYLVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVF--------LHPK 78
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R + +G + D +RRD TINA+ D G++ D GG
Sbjct: 79 TKEEYALARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGK 138
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL NR ++ I ED LR+LR RF A + + + A L
Sbjct: 139 QDLANRLLRHI---SPAFSEDPLRVLRVARFAARFHSLGFKIAPETVKLMQEMTACGELA 195
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E K NP + G +F + + + E
Sbjct: 196 HLTAERVWLETQKAFATDNPQIYFEVLREIGALAVLFPEFDRLFGVPQPEQHHPEIDSGV 255
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
++ ++ + + ++ + + ++L
Sbjct: 256 HTLLVIEQAKRLAKNAENPTALLWAALCHDLGKGLTEKDILPHHYGHEVKGVKPARELSN 315
Query: 319 LYGDKVMIAKLKIF---LALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ I H + + +L+V + + W+KP
Sbjct: 316 RLKVSTDVKDFAILVTEYHTHCHKMAELRPETVLKVFNALDIWRKPQ 362
>gi|229592961|ref|YP_002875080.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas fluorescens SBW25]
gi|259585847|sp|C3K334|CCA_PSEFS RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|229364827|emb|CAY52860.1| multifunctional cca protein [includes: cca-adding enzyme (ec
2.7.7.25) (ec 2.7.7.21) (trna nucleotidyltransferase)
(trna adenylyl-/cytidylyl-transferase) (trna
cca-pyrophosphorylase) (trna-nt); 2'-nucleotidase (ec
3.1.3.-); 2',3'-cyclic phosphodiesterase (ec 3.1.4.-);
phosphatase (ec 3.1.3.-)] [Pseudomonas fluorescens
SBW25]
Length = 409
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 75/406 (18%), Positives = 130/406 (32%), Gaps = 59/406 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGAVRD L+ + V DID + + ++ P + + K
Sbjct: 2 KIYKVGGAVRDRLLGIKVTDIDRVVVGATTEEMLAK------GFKPVGADF--PVFLDPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y VF + D +RRD TINA+ D G + D GL
Sbjct: 54 NGDEYALARTERKSGRGYGGFVFHASPEVTLEEDLIRRDLTINAMAEDDDGNLTDPYHGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL R ++ + ED LR+LR RF A Y + +
Sbjct: 114 RDLEARILRHV---SPAFAEDPLRVLRVARFAARYAHLGFTVAPETLELMRQLSESGELE 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER W EI++ L P I + + K + +V + + E
Sbjct: 171 ALTPERSWKEISRALMEDQPQVFIQVLRDCAALKTLMPEVDALFGVPQPEAHHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
S+L + Q + + + ++ I + + F
Sbjct: 231 HTLSVL-EQAALHKQPLTVRWACLLHDLGKGTTPVDKLPQHIAHEHRGLKLIKAVNERFK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPL--------- 365
+ D +A L H + +L++L +++P F +
Sbjct: 290 VPRDCQELALLVGQYHTHGHRALELKASTLLELLQSFDVYRRPQRFEEFAIACEMDARGR 349
Query: 366 TG--------DD----------------VVKYGIPPGKKVGNILVH 387
G D +++ G G ++G L
Sbjct: 350 KGLEQRIYPQADYLRGAAKAAREVAVAPLLEKGYK-GPELGEALKR 394
>gi|219870526|ref|YP_002474901.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Haemophilus parasuis SH0165]
gi|219690730|gb|ACL31953.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Haemophilus parasuis SH0165]
Length = 423
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 65/346 (18%), Positives = 125/346 (36%), Gaps = 23/346 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD L+ L+V+D D P++++ + P + K
Sbjct: 7 IYLVGGAVRDQLLGLAVKDRDWLIVGATPEQLLAQGYQQVGNDFPVF--------LHPKT 58
Query: 88 YFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ +G + D +RRD TINA+ D G D+ GG+
Sbjct: 59 KEEYALARTERKNGNGYNGFICDFTPEVTLEQDLIRRDLTINAIAQDLDGNYHDFYGGIA 118
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL++R ++ + ED LR+LR RF A + + + A L
Sbjct: 119 DLKHRLLRHV---SPAFAEDPLRVLRVARFAARFHSLGFRIAPETVKLMQEMTACGELAH 175
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L++ER+W E K P + G K +F +V+ + + E
Sbjct: 176 LTAERVWLETQKAFATDTPHIYFQVLREVGALKVLFPEVEALFGVPQPEKHHPEIDSGIH 235
Query: 260 IDSLL---RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+L + + + + + + ++ + + ++
Sbjct: 236 TLMVLEQAKKLAARANDPESVLFAALCHDLGKALTPKDILPHHYGHEQKGVAPTKQLANR 295
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ AKL H + +T ++++ + + W+KP
Sbjct: 296 LKVPAHTKAFAKLVTEFHTHNHKITELRPETVVKLFNKLDVWRKPE 341
>gi|78484585|ref|YP_390510.1| metal dependent phosphohydrolase [Thiomicrospira crunogena XCL-2]
gi|123556038|sp|Q31J37|CCA_THICR RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|78362871|gb|ABB40836.1| metal dependent phosphohydrolase [Thiomicrospira crunogena XCL-2]
Length = 416
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 76/348 (21%), Positives = 125/348 (35%), Gaps = 29/348 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD+L+N+ V D D P ++ K P + K
Sbjct: 2 KTYLVGGAVRDALLNIPVYDHDWVVVGATPQDMLEQGFSQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ D +G+++D GG
Sbjct: 54 TKEEYALARTERKSGQGYHGFEVSFDPTVTLEDDLIRRDLTINAMAQDAEGQIVDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL ++ ++ + ED LR+LR RF A + S+ A L
Sbjct: 114 QDLADKVLRHV---SEAFAEDPLRVLRVARFAAKLSAFGFTLAPETAALMKSMSASGELS 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E+ K L + P + + +F + + Q + E
Sbjct: 171 ALTPERVWQEVVKALNTQTPSVFFEVLDHVNALSILFPALDALKGVQQPEKHHPEGDAWV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L +S S+ A L + + + + + + + Y
Sbjct: 231 HTMMVLDASAALSND--VSVRFAALVHDLGKGLTPKALWPKHHGHEKAGVPLVAALCQQY 288
Query: 319 LYGDKVMIAKLK-------IFLALHYNNLTHQDTCFILQVLSDIIHWK 359
K+ I K I L H T L+VLS +K
Sbjct: 289 RVPKKIQIFAEKVTEYHGLIHRGLDLEGHPHLKTATFLKVLSACQAFK 336
>gi|313200253|ref|YP_004038911.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Methylovorus sp. MP688]
gi|312439569|gb|ADQ83675.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Methylovorus sp. MP688]
Length = 407
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 64/341 (18%), Positives = 121/341 (35%), Gaps = 19/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD+L+ L VQD D + P + + K P +
Sbjct: 2 QTFVVGGAVRDALLGLPVQDQDHVVVGSTPAEMEAAGFRRVGKDFPVF--------LHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y + D RRD TINA+ + G +ID G
Sbjct: 54 THEEYALARTERKTAKGYKGFEVHASPDVTLEEDLARRDLTINAIARAEDGSLIDPYHGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY--GEKNIDSDGLVASIKAKKGLKIL 200
DL R ++ + ED +RILR RF A + ++ L+ + A + L
Sbjct: 114 ADLEARILRHV---SPAFAEDPVRILRAARFAARFTEFTLAHETLALMQQMVADGEVDAL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER+W E+ K L P + G + IF ++ + E +
Sbjct: 171 VPERVWQELAKGLMEAKPSRMFEMLRACGALQRIFPELDRLWGVPQPAQHHPEIDTGVHV 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
++ + + ++ + + + + ++ K +
Sbjct: 231 MMVIDYAASQGYSLPVRFAALTHDLGKG-TTPPDIWPRHIGHELRSVDLLKDVVKRLRVP 289
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
D +A+L + + +L L ++ ++P
Sbjct: 290 NDCRELAQLVARFHGKVHQVNAMRPDTLLHFLQELDALRQP 330
>gi|148828409|ref|YP_001293162.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Haemophilus influenzae PittGG]
gi|166233857|sp|A5UJ23|CCA_HAEIG RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|148719651|gb|ABR00779.1| tRNA nucleotidyltransferase [Haemophilus influenzae PittGG]
Length = 416
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 70/347 (20%), Positives = 120/347 (34%), Gaps = 25/347 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L V+D D I P ++ + + K P + K
Sbjct: 2 KIYLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVF--------LNPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ + G++ID GG
Sbjct: 54 TKEEYALARTERKSSTGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL NR ++ I ED LR+LR RF A Y ++ A+
Sbjct: 114 QDLENRILRHI---SPAFSEDPLRVLRVARFAARYHSLGFKIASETLALMAELAQSGELQ 170
Query: 203 ERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ K L KNP ++ G +F ++ + E
Sbjct: 171 HLTAERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEIDALHGVPNPVKHHPEVDSFI 230
Query: 259 KIDSLLRFIVLI----SWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEI 313
+L+ V + +K ++ A L + + I + + +
Sbjct: 231 HTMLVLKQAVNLTENNPILNKSAVRFAAICHDLGKALTPQNILPHHYGHEQAGIKPTRSL 290
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
K + +A+L H + ++ + + W+K
Sbjct: 291 CKRLKVPSYFQELAELTCEFHTHIHKAFELRAETVITLFNRFDVWRK 337
>gi|221064990|ref|ZP_03541095.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Comamonas testosteroni KF-1]
gi|220710013|gb|EED65381.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Comamonas testosteroni KF-1]
Length = 420
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 51/270 (18%), Positives = 94/270 (34%), Gaps = 19/270 (7%)
Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
K VGGAVRD+L+ L V D D P+++ +P + +
Sbjct: 4 FKVFKVGGAVRDALLGLPVNDTDWVVVGATPEQMSAR------GFVPVGRDF--PVFLHP 55
Query: 86 KKYFDITTLRSDLIT-DGRYAKVVFT---RDWKADSLRRDFTINALYADQQG----KVID 137
+ + + R++ G VV T + D RRD TIN++ A ++ D
Sbjct: 56 QTHEEYALARTERKNGMGYRGFVVHTAADVTLEEDLARRDLTINSIAAPADWRGKDELQD 115
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK--K 195
V + ++ + + ED +RILR RF A + + + + + +
Sbjct: 116 LVDPYHGQQDLKDRVLRHVTDAFREDPVRILRLARFAARFTDFRVAPETMELMREMVAAG 175
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L ER+W EI++ L + P + G + ++ + E
Sbjct: 176 EVDALVPERVWQEISRGLMEERPSRMFDILRECGALVRLLPELDRLWGVPQRAEYHPEID 235
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+L + + F
Sbjct: 236 CGVHAMMVLDMSARLQAPLSVRFACLCHDF 265
>gi|30249583|ref|NP_841653.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Nitrosomonas europaea ATCC 19718]
gi|73619813|sp|Q82U82|CCA_NITEU RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|30138946|emb|CAD85525.1| Poly A polymerase family:HD domain [Nitrosomonas europaea ATCC
19718]
Length = 412
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 63/340 (18%), Positives = 115/340 (33%), Gaps = 18/340 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGG+VRD L+ L V+D D + P+ ++R+ P + + +
Sbjct: 2 KIYRVGGSVRDELLGLPVKDQDYVVVGATPEEMVRL------GYRPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y + D RRD TINA+ D+ G ++D GG+
Sbjct: 54 THEQYALARTERKIARGYKGFEVYAAPGVTLQEDLARRDLTINAMARDEAGDIVDPFGGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK-ILS 201
DL+ ++ IG A +ED +R+LR RF A +G + + G L
Sbjct: 114 ADLQAGILRHIGPA---FVEDPVRVLRVARFAARFGFQIAPETLELMKEIVHTGETEALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
ER+W EI L +P + G I +V + E +
Sbjct: 171 PERVWQEIAHGLMESHPSRMFYVLRECGALARILPEVDALFGVPQPAHAHPEIDTGIHVM 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
++ + + + + + + + + + G
Sbjct: 231 MVIDHAASKQYPLEVRFAGLTHDLGKG-TTSPDEWPRHIGHEARSVELVMGLCERIRVPG 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ +A L + I +L ++K
Sbjct: 290 ESRDLALLVARFHGDVHRALELRPATIADMLQATDAYRKK 329
>gi|262360751|gb|ACY57472.1| tRNA nucleotidyltransferase [Yersinia pestis D106004]
Length = 312
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/266 (21%), Positives = 100/266 (37%), Gaps = 20/266 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRDSL+NL V + D P++++++ + K P +
Sbjct: 3 IYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLKLGYQQVGKDFPVF--------LHPVS 54
Query: 88 YFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ + R++ + Y + D LRRD T+NA+ G+ ID G
Sbjct: 55 HEEYALARTERKSGQGYTGFTCYAAPDVTLEDDLLRRDLTVNAIARSADGEFIDPYHGKQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL--- 200
DL NR ++ + ED LR+LR RF A + S+ +
Sbjct: 115 DLENRVLRHV---SDAFGEDPLRVLRVARFAARFAYLGFTIAPETMSLMSNMAQSGELSA 171
Query: 201 -SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
+ ER+W E K L+ ++P + + G +F +++ + + E
Sbjct: 172 LTPERVWKETEKALKTQSPHVYFQVLRDCGALAVLFPEIERLFGVPAPEKWHPEIDTGIH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKF 285
L +S + ++
Sbjct: 232 TLMTLAIAAQLSPEVDIRFAALCHDL 257
>gi|126695498|ref|YP_001090384.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT
9301]
gi|126542541|gb|ABO16783.1| Poly A polymerase family [Prochlorococcus marinus str. MIT 9301]
Length = 405
Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 61/389 (15%), Positives = 117/389 (30%), Gaps = 30/389 (7%)
Query: 30 CIVGGAVRDSLMNLSVQ--DIDIATTILPDRV-MRIFSKTRYKVIPTSISYGTIKIICRK 86
+VGG +RD ++ + D+DI + + +I K I ++I
Sbjct: 37 YLVGGYIRDIILGRKTEKLDVDIVVPLKAIEIGKKIAENIESKFIVLDEKREVVRIFLNN 96
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146
DI + + D RDF+IN++ K +
Sbjct: 97 IDIDIA--------------NQVSSTIEGDLFSRDFSINSIAFLLDKKCLLDPLNGLKDL 142
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
++ +L D LRILR FRF + K + K +
Sbjct: 143 EISLLRSHS-EKNLLNDPLRILRCFRFVSELNFKIDLNLITFIKKNKVKLYIAAKERINY 201
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
+ A + + I ++ L ++ AE E K L F
Sbjct: 202 EIQKIVNGANALEAVL--LIKKLNIFGIDNLFEDSFFLDLEKINYAELNQEEKEKFLPSF 259
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ + +K + +F + +I ++ + K +
Sbjct: 260 FIAQILD-----VVSLEKLKFSKAEISKTKLLRKWHFLLEKKNISQLTEAERFALHKELE 314
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385
L +F+ N ++ + + P L GD + K I G +G +L
Sbjct: 315 MFLPLFIFYLPQNSR---LDWLHRWRDNNDKLFHPSNLLNGDVIKKNLKIKDGPILGELL 371
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ +E E + + ++ I
Sbjct: 372 QYLSKELAYKRLNNFDEAI-YKAKRWIEQ 399
>gi|322692774|gb|EFY84664.1| putative tRNA nucleotidyltransferase [Metarhizium acridum CQMa 102]
Length = 499
Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 62/452 (13%), Positives = 129/452 (28%), Gaps = 73/452 (16%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSK----------TRYKVIPTSISY 77
GG VRD L+ + DID+A + + K +
Sbjct: 37 VRWAGGWVRDKLLGIESHDIDVAINAMTGFDFAQRMREYCSTEKASRIHAIKPDDIGNLH 96
Query: 78 ------------GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
T + D+ LR + + V + D+LRRD TIN
Sbjct: 97 NISKNPDKSKHLETAMVRIFGLDLDLVNLRKETYAEDSRNPTVEFGTAEEDALRRDATIN 156
Query: 126 ALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A + + I+ G DL + ++ + +D LR+LR RF + G +
Sbjct: 157 AFFYNIHTDEIEDFTGGMRDLTAKVLRTPLNPLETFKDDPLRVLRLVRFASRLGFSIEEE 216
Query: 185 DGLVASI--------------------------------KAKKGLKILSSERIWSEINKL 212
V S K+ + ++ L
Sbjct: 217 TRKVMSHPEVLDALQVKISRERVGTELEKMLKVFTDFSSKSTTRPDSSRWHVAYKCLDSL 276
Query: 213 LEAKNPLNAIVHMYNGGI-------------FKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
+ ++P + + G + + + + + +K
Sbjct: 277 VRRRSPGSLGELLIRPGEANYVAWILAALSPWMVVEPPLNNVRKANVLPPPAVAAREGFK 336
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ L I+ S+++++ I+ M + + P ++
Sbjct: 337 APNKLVDIMTGSYRNRREIIRMKTSLCNEEGAVLARDTLGMAIRRWDSYGGPWTLQVLSA 396
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP--LFPLTGDDV-VKYGIP 376
+ M ++ + L ++ ++ + P L G + + G+
Sbjct: 397 LLVEAMESQDAWTELDTEKDNFMTGWQKFLDLIIELDVYDAPAIKRLLDGRSLAMALGVK 456
Query: 377 PGKKVGNILVHCKQEWINSSFQLS-QEDLHHL 407
PGK G L C + + + + +
Sbjct: 457 PGKWTGKALDLCLAWQFRNPQETDPRGAIEEI 488
>gi|260222271|emb|CBA31668.1| Multifunctional CCA protein [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 477
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 54/325 (16%), Positives = 104/325 (32%), Gaps = 26/325 (8%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD+L+ L V+D D P +++ + + + +
Sbjct: 59 FLVGGAVRDALLGLEVKDRDWVVVGSSPQQMLDA------GYLAVGKDF--PVFLHPRTQ 110
Query: 89 FDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ T Y + D RRD TIN++ A + +
Sbjct: 111 EEYALARTERKTAPGYKGFAVHAAPDVTLEEDLARRDLTINSIAARADYTGANGTFDTKN 170
Query: 145 LRNRT-------IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKK 195
L + ++ + ED +RILR RF A + + + + + ++
Sbjct: 171 LIDPFSGQADLQMRVLRHVTPAFREDPVRILRVARFAARFTDFTVAPETTALMQTMVEDG 230
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L ER+W EI K L P + + G K + ++ + S E
Sbjct: 231 EVDHLVPERVWQEIAKGLMEARPSRMFEVLRSCGAMKRLLPELDRLWGVPQSPEYHPEVD 290
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+L + + + + S +K
Sbjct: 291 TGVHFMLVLDRAAQLDAP----LAVRFACLGHDLGKGTTPADVLPRHIGHEERSARLLKG 346
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL 340
+ A+L +A + N+
Sbjct: 347 VCRRLRVPNDCAELADVVAREHGNI 371
>gi|152992555|ref|YP_001358276.1| polynucleotide adenylyltransferase/metal-dependent phosphohydrolase
[Sulfurovum sp. NBC37-1]
gi|151424416|dbj|BAF71919.1| polynucleotide adenylyltransferase/metal-dependent phosphohydrolase
[Sulfurovum sp. NBC37-1]
Length = 485
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 65/293 (22%), Positives = 113/293 (38%), Gaps = 12/293 (4%)
Query: 13 SDLI-NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI--LPDRVMRIFSKTRYK 69
+++ I L +VGGAVRD +M V+D DI D + + SK
Sbjct: 8 PEVLYTIADRLETKGAAVLLVGGAVRDMVMGQDVKDYDIEVYGLTTLDELESVLSKFG-S 66
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTIN 125
V +G +K+ +D + R++ T + D+K + RRDFTIN
Sbjct: 67 VSQVGKHFGIVKLRIGDVEYDFSFPRTERKTGRGHTGFEVEIDGMLDFKEAAHRRDFTIN 126
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
A+ + + I G + I +ED LR+ R +F A +G ++
Sbjct: 127 AIGYNIKTYEILDPFGGLNDIRYKILR-HIDDSTFIEDPLRVYRAIQFAARFGFDVAENT 185
Query: 186 GLVASIKAKKGL-KILSSERIWSEINK-LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
++ G+ + L ERI+ E K LL+A P M GI + FL++ +
Sbjct: 186 AVLCKQMVASGVLEELPKERIYEEWKKLLLKAPKPSMGFGLMREWGITEHCFLELHALID 245
Query: 244 DQLSQVIEAE-QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
E V+ + S+ +++ ++K S ++
Sbjct: 246 VPQDTKYHPEGDVWTHTMLSIDAMASILNKEEKVESRSCRVLSPDSTTDKHRN 298
Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/264 (9%), Positives = 64/264 (24%), Gaps = 10/264 (3%)
Query: 156 AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215
+ +R ID E
Sbjct: 218 PKPSMGFGLMREWGITEHCFLELHALIDVPQDTKYHPEGDVWTHTMLSIDAMASILNKEE 277
Query: 216 KNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK 275
K + + + + + + L + + ++ +
Sbjct: 278 KVESRSCRVLSPDSTTDKHRNEKRALKLLFAELCHDFGKPMTTTVEEGCIKAIGHEKAGI 337
Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
+ S + + + ++ + + KV I L +
Sbjct: 338 EPTRSFMYRLTEEHDFIESILPLVEHHLKPSQFYKQGAKASAIRRLATKVNIEDLVLVAK 397
Query: 335 LHYNNLTHQDTC--------FILQVLSDIIHWKKPLFPL-TGDDVVKYGIPPGKKVGNIL 385
+ T + ++L ++ +P+ P+ G D++ G+ P + G IL
Sbjct: 398 ADFLGRTTPEAKKGVYEAGEWLLGKAEELKVKNRPIEPILQGRDLIALGMQPSPRFGTIL 457
Query: 386 VHCKQEWINSSFQLSQEDLHHLLR 409
++ + L H+ R
Sbjct: 458 DEVYGLQLDGVISDREGALDHVKR 481
>gi|309973279|gb|ADO96480.1| tRNA nucleotidyltransferase/23-cyclic
phosphodiesterase/2nucleotidase and phosphatase
[Haemophilus influenzae R2846]
Length = 416
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 71/347 (20%), Positives = 121/347 (34%), Gaps = 25/347 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGA+RD L+ L V+D D I P ++ + + K P + K
Sbjct: 2 KIYLVGGAIRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVF--------LNPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ + G++ID GG
Sbjct: 54 TKEEYALARTERKSSTGYTGFICDFSPTITLEQDLIRRDLTINAMAQREDGEIIDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL NR ++ I ED LR+LR RF A Y S+ A+ L
Sbjct: 114 QDLENRILRHI---SPAFSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELALSGELQ 170
Query: 203 ERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ K L KNP ++ G +F ++ + E
Sbjct: 171 HLTAERVWLETEKALNEKNPEIYFETLHKTGALSVLFPEIDALYGVPNPVKHHPEVDSFI 230
Query: 259 KIDSLLRFIVLI----SWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEI 313
+L+ V + +K ++ A L + + I + + +
Sbjct: 231 HTMLVLKQAVNLTENNPILNKSAVRFAAICHDLGKALTPQNILPHHYGHEQAGIKPTRSL 290
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
K + +A+L H + ++ + + W+K
Sbjct: 291 CKRLKVPSYFQELAELTCEFHTHIHKAFELRAETVITLFNRFDVWRK 337
>gi|315633917|ref|ZP_07889206.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393]
gi|315477167|gb|EFU67910.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393]
Length = 422
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 73/352 (20%), Positives = 127/352 (36%), Gaps = 24/352 (6%)
Query: 24 KGEDKSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82
+ +VGGAVRD L+NL V+D D P ++ + K P
Sbjct: 2 AEKFHVYLVGGAVRDQLLNLPVKDRDWVIVGATPQDLLNQGYQQVGKDFPVF-------- 53
Query: 83 ICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138
+ + + R++ G + D +RRD TINA+ D G + D
Sbjct: 54 LHPQNKEEYALARTERKAGNGYTGFICDFSADITLEQDLVRRDLTINAIAQDLAGNLYDP 113
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA----K 194
G+ DL R ++ + ED LR+LR RF A Y + + +
Sbjct: 114 YHGVEDLEKRVLRHV---SPAFSEDPLRVLRVARFAARYHYLGFNIADETLQLMTALSAQ 170
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
L+ L++ER+W+E K L KNP + G K +F ++ + E
Sbjct: 171 GELQHLTAERVWAETEKALNEKNPEIYFETLRQVGALKVLFPELDALYGVPNPAKYHPEI 230
Query: 255 VFEWKIDSLLRFIVLIS---WQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSI 310
+L+ L+S K ++ A L + + + +
Sbjct: 231 DSFVHTMMVLQQATLLSEQVDCHKSAVRFAAICHDLGKACTPKQNWPHHHGHEKLGVVPT 290
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ K + +A+L H + + I+++ + W+KPL
Sbjct: 291 KSLCKRLKVPTYYQQLAELTCEYHSHVHKVFELRPETIVKLFNTFDVWRKPL 342
>gi|91228362|ref|ZP_01262289.1| tRNA nucleotidyltransferase [Vibrio alginolyticus 12G01]
gi|91188061|gb|EAS74366.1| tRNA nucleotidyltransferase [Vibrio alginolyticus 12G01]
Length = 406
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 57/342 (16%), Positives = 114/342 (33%), Gaps = 21/342 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + D D P+ ++ K P + K
Sbjct: 2 QVYLVGGAVRDKLLGIDSYDNDWVVVGATPEMMLSQGYTAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D +RRD TINA+ + G + D GG
Sbjct: 54 SKEEYALARTERKSGSGYTGFECFFDQNVTLEEDLIRRDLTINAMAMESDGTIHDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL ++ ++ + +ED LR+LR RF A + N +
Sbjct: 114 QDLNDKLLRHV---SDAFIEDPLRVLRVARFAAKLADLNFTVADETMRLMRHMAESGELS 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E +K L P + + + G + ++ + + E
Sbjct: 171 TLTPERVWQEWHKSLSTPRPDIFLSVLRDCGALTVVLPEIDALFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ +S + + + I ++ +
Sbjct: 231 HTLMVAEQAAKLSNSLPVRFAAQVHDLGKG-VTPESEWPSHKMHCHTGLKLIKKLCERVR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ + +A + + + I+++L+ + W+K
Sbjct: 290 VPNEFRDLALMVCEQHSNIHRAAELKPQTIIKILNKLDVWRK 331
>gi|82703566|ref|YP_413132.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Nitrosospira multiformis ATCC 25196]
gi|123543932|sp|Q2Y681|CCA_NITMU RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|82411631|gb|ABB75740.1| metal dependent phosphohydrolase [Nitrosospira multiformis ATCC
25196]
Length = 413
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 63/341 (18%), Positives = 118/341 (34%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGG+VRD ++ L V D D P+ ++ + P + + +
Sbjct: 2 KTYLVGGSVRDEILGLPVTDHDYVVVGVSPEEMVHL------GFRPVGKDF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWK----ADSLRRDFTINALYADQQGKVIDYVGGL 142
R++ Y + D RRD TINA+ D+ G +ID GG+
Sbjct: 54 SQEQYALARTERKVSRGYKGFEVYASPEVTLQEDLARRDLTINAIAKDEYGNIIDPFGGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILS 201
DL ++ IG A ED +R+LR RF A +G + + G L
Sbjct: 114 ADLEAGVLRHIGPA---FTEDPVRVLRTARFAARFGFHIAPETLALMNEMVHNGEVDALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
SER+W EI + L ++P + + G I +V + E +
Sbjct: 171 SERVWQEIARGLMERHPSRMFYALRDCGALTRIMPEVDALFGVPQPPQHHPEIDTGVHVM 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
++ + ++ + ++ + + + + +
Sbjct: 231 MVIDYAASRNYSLQVRFAALTHDLGKG-TTPPEEWPRHIGHEARSVRLVQGLCERINPPN 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + I +L + ++KP
Sbjct: 290 EMRNLALLVARYHGDVHRAAELRPVTIANLLQGVDAYRKPE 330
>gi|218780762|ref|YP_002432080.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfatibacillum alkenivorans AK-01]
gi|218762146|gb|ACL04612.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfatibacillum alkenivorans AK-01]
Length = 472
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 71/481 (14%), Positives = 140/481 (29%), Gaps = 102/481 (21%)
Query: 16 INILSLLNK--GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ S +VGG+VRD ++ ++DID+A + ++ +P
Sbjct: 4 QKLTSWFKSGGAGAPLYLVGGSVRDFVLGRPMKDIDLACPNARELAKKLAKANNAAFVPM 63
Query: 74 SIS-----YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + + D+ R D D RDFTINA+
Sbjct: 64 EKDPAAPCFRVVNRSDPTDFLDVVRFRGP--------------DIHTDLADRDFTINAMA 109
Query: 129 ADQQGKV--------IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
D + +D GL+D+R + I+ +G + + +D LRILR FRF + G +
Sbjct: 110 LDLENGFPQDPMGAILDPFNGLDDIRKQIIRSLGRKN--LKDDPLRILRAFRFASQLGFE 167
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK-------NPLNAIVH--------M 225
+ A + + + I ++ M
Sbjct: 168 IEEKTLADCRELAPQLERTAAERITHELITAFEAENSYSVVRKMWKAGVLLPIFPDIAPM 227
Query: 226 YNGGIFKEIFLDVQEISLDQLSQV----------------IEAEQVFEWKIDSLLRFIVL 269
+V E SLD + E + + +L+ L
Sbjct: 228 EACQQDGFHHHNVWEHSLDVYEALEGVLGGLDALFGEYAPQVRECLEAGRTVPMLKLSAL 287
Query: 270 ISWQDKKS-----------------------ILSMAKKFSLPREIRYFLISFFNCN---- 302
+ K + L + F+ + +
Sbjct: 288 LHDIGKPYTGRYDEAKGRTTFFGHAKKGEALARKALGRLRLTNKDMDFVCLLVSEHRHVE 347
Query: 303 -FNQKTLSIPEIKKLFYLYGDK-------VMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
Q + + GD M L + + +++++ +
Sbjct: 348 QLAQPVVKHKTRMAWYRKMGDFSVACAVLAMADNLSKQGRMCTETERSRREKHLMEMVRE 407
Query: 355 IIHWKKPLFP----LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
K + G+D+++ G+P G +G +L + ++E L +
Sbjct: 408 YFAEAKGALARPLLINGNDLLEIGLPKGPGLGKVLKAVTAAQDAGQVK-TKEQALALAKN 466
Query: 411 L 411
L
Sbjct: 467 L 467
>gi|323142889|ref|ZP_08077600.1| multifunctional CCA protein [Succinatimonas hippei YIT 12066]
gi|322417317|gb|EFY07940.1| multifunctional CCA protein [Succinatimonas hippei YIT 12066]
Length = 427
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 72/342 (21%), Positives = 124/342 (36%), Gaps = 21/342 (6%)
Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGA+RD L+ + D D + P ++ + + I K
Sbjct: 4 YLVGGAIRDQLLKIDGADRDHVVVGSTPQEMLDL------GFTQVGNDF--PVFIHPKTG 55
Query: 89 FDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ Y + D RRD TINA+ D+ GK+ID GG ND
Sbjct: 56 EEYALARTEKKQGHGYTGFVCSFDKDVTLEEDLQRRDLTINAMAMDKNGKIIDPYGGQND 115
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL---- 200
L NR ++ + +ED LR+LR RF A S+ +
Sbjct: 116 LNNRILRHV---SPSFIEDPLRVLRVARFAAKLHYLGFYIADETISLMKEITESGELSSL 172
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ ERIW E K L +P + + G K IF +V + + E
Sbjct: 173 TPERIWIETQKALNTSDPQIFFIILRKIGALKIIFPEVDALFGVPGPKRWHPEIDSGIHT 232
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
LR + + D K+ +M + + + ++ K +
Sbjct: 233 FMTLR-RISLETSDPKTRFAMLCHDLGKALTPKNEWPHHHNHCALGVEPLKQLCKRLKVP 291
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D +A + +F + ++L I+ +L ++ W++P
Sbjct: 292 KDYEELAYIVVFHHSYMHHLYRNGAEGIVNLLDELDAWRRPQ 333
>gi|153839924|ref|ZP_01992591.1| multifunctional CCA protein [Vibrio parahaemolyticus AQ3810]
gi|149746556|gb|EDM57544.1| multifunctional CCA protein [Vibrio parahaemolyticus AQ3810]
Length = 406
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 59/342 (17%), Positives = 113/342 (33%), Gaps = 21/342 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + D D P+ ++ K P + K
Sbjct: 2 QVYLVGGAVRDQLLGIDSYDNDWVVVGATPEMMLAQGYTAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D +RRD TINA+ D G++ D GG
Sbjct: 54 NKEEHALARTERKSGSGYTGFDCFFDPSVTLEEDLIRRDLTINAMAMDDSGQLYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL NR ++ + +ED LR+LR RF A +
Sbjct: 114 ADLNNRILRHV---SDAFVEDPLRVLRVARFAAKLASLGFTVAKETMQLMRDMADSGELN 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E +K L P + + + G + ++ + + E
Sbjct: 171 TLTPERVWQEWHKSLSTPRPDVFLSVLRDCGALAVVLPEIDALFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ +S + + + I ++ +
Sbjct: 231 HTLMVAEQAAKLSTSLPVRFAAQVHDLGKG-VTPESEWPSHKMHCHTGLKLIKKLCERVR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ + +A + + + I+++L+ W+K
Sbjct: 290 VPNEFKDLALMVCEQHSNIHRAAELKPQTIIKILNKFDVWRK 331
>gi|55980894|ref|YP_144191.1| poly(A) polymerase family protein [Thermus thermophilus HB8]
gi|55772307|dbj|BAD70748.1| poly(A) polymerase family protein [Thermus thermophilus HB8]
Length = 431
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 70/422 (16%), Positives = 140/422 (33%), Gaps = 61/422 (14%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ D+D A + P+ + + P G +++ ++
Sbjct: 11 AFPVGGAVRDLLLGRRPTDLDYA-ALDPEGAAEEAKRRLGGSLFPLDPKRGHYRLVVGER 69
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
D T L +GR + D LRRD+ +NAL + G V G DLR
Sbjct: 70 TLDFTPL------EGR---------LEEDLLRRDYRVNAL-LWKGGAVFGLKGVEEDLRR 113
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS----SE 203
R + + + + + +D+LR LR R A G A+ E
Sbjct: 114 RLLVPVREEN--LYQDHLRSLRGVRLAATLGFGLPQRTREALGRHARFLQAHPEALPARE 171
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------------QEISLDQLS 247
R+ E+ +LL + + + G+ ++ + +L +
Sbjct: 172 RVKEELARLLLSPRAAFGLRLLERVGLLGVYLPELALLVGLHQGGVHHLPAWDHTLSAVF 231
Query: 248 QVIEA--EQVFEWKIDSLLR-----------------FIVLISWQDKKSILSMAKKFSLP 288
++ E E ++ +L + + + + P
Sbjct: 232 HLLWLWPEAPLEARLAALFHDVGKPLTRRFDPEVGRFRFLGHAEVGAEIARASLFWLRFP 291
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
+E+ + ++ +++ F D + + ++ +
Sbjct: 292 KEVVERAAGLVRRHMDRLPEERKALRRFFLRRQDLLPDLVYLMAADRLATRGVEREAWEV 351
Query: 349 LQVLSDIIHWKKPL-FPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L +++ P L+G++V+ G+ G +VG L + +E
Sbjct: 352 LGRYEEVLKDPLPQRPLLSGEEVMALLGLQEGPEVGRALKALLEAQAEGRVGTKEEARAF 411
Query: 407 LL 408
LL
Sbjct: 412 LL 413
>gi|28897188|ref|NP_796793.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Vibrio
parahaemolyticus RIMD 2210633]
gi|260361613|ref|ZP_05774640.1| multifunctional CCA protein [Vibrio parahaemolyticus K5030]
gi|260878093|ref|ZP_05890448.1| multifunctional CCA protein [Vibrio parahaemolyticus AN-5034]
gi|260895976|ref|ZP_05904472.1| multifunctional CCA protein [Vibrio parahaemolyticus Peru-466]
gi|260902508|ref|ZP_05910903.1| multifunctional CCA protein [Vibrio parahaemolyticus AQ4037]
gi|73619897|sp|Q87SK9|CCA_VIBPA RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|28805397|dbj|BAC58677.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus RIMD 2210633]
gi|308086717|gb|EFO36412.1| multifunctional CCA protein [Vibrio parahaemolyticus Peru-466]
gi|308089823|gb|EFO39518.1| multifunctional CCA protein [Vibrio parahaemolyticus AN-5034]
gi|308109814|gb|EFO47354.1| multifunctional CCA protein [Vibrio parahaemolyticus AQ4037]
gi|308111843|gb|EFO49383.1| multifunctional CCA protein [Vibrio parahaemolyticus K5030]
Length = 406
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 59/342 (17%), Positives = 114/342 (33%), Gaps = 21/342 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + D D P+ ++ K P + K
Sbjct: 2 QVYLVGGAVRDQLLGIDSYDNDWVVVGATPEMMLAQGYTAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D +RRD TINA+ D G++ D GG
Sbjct: 54 NKEEHALARTERKSGSGYTGFDCFFDPSVTLEEDLIRRDLTINAMAMDDSGQLYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL NR ++ + +ED LR+LR RF A +
Sbjct: 114 ADLNNRILRHV---SDAFVEDPLRVLRVARFSAKLASLGFTVAKETMQLMRDIADSGELN 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E +K L P + + + G + +++ + + E
Sbjct: 171 TLTPERVWQEWHKSLSTPRPDVFLSVLRDCGALAVVLPEIEALFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ +S + + + I ++ +
Sbjct: 231 HTLMVAEQAAKLSTSLPVRFAAQVHDLGKG-VTPESEWPSHKMHCHTGLKLIKKLCERVR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ + +A + + + I+++L+ W+K
Sbjct: 290 VPNEFKELALMVCEQHSNIHRAAELKPQTIIKILNKFDVWRK 331
>gi|269468139|gb|EEZ79846.1| tRNA nucleotidyltransferase/poly(A) polymerase [uncultured SUP05
cluster bacterium]
Length = 361
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 64/341 (18%), Positives = 122/341 (35%), Gaps = 25/341 (7%)
Query: 30 CIVGGAVRDSLMNL--SVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+VGGAVRD L+ + + D P+ ++ + + K P +
Sbjct: 4 YLVGGAVRDRLLGIANENTEKDWVVVGSSPEEMLDLGYRQVGKEFPVF--------LHPG 55
Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R + Y F + D RRD TINA+ D +ID G
Sbjct: 56 TQEEYALARVERKVGAGYKGFEFDTSSEVTLEQDLSRRDLTINAIAQDGND-LIDPFHGQ 114
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKAKKGLK 198
DL N ++ + ED +R+LR RF A + + + L+ + + +
Sbjct: 115 KDLSNGLLRHV---SGAFGEDPVRVLRVARFAARFKSFGFKVAHSTHQLMQQMVSSGEVD 171
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER++ E+NK L P + G F +F + E +
Sbjct: 172 ALIPERVFKELNKALSYDTPSAFFKVLSACGAFGRVFPMLSAEEHQTHDNEFEFLDHLKT 231
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
++ +F + ++ + ++I + K P+E + + + +++F
Sbjct: 232 NNPAV-KFAIWLNKESVQAIEKLCKVIKCPKEHEQLALLSSEWHRFADSFIQHNAEEIFE 290
Query: 319 LYGD-KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + K + L L DT I+Q+ + +
Sbjct: 291 FFAKTDALRRKDRFRRLLSVFELLGADTRAIIQLQDQLGNI 331
>gi|218296602|ref|ZP_03497320.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermus aquaticus Y51MC23]
gi|218242915|gb|EED09448.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermus aquaticus Y51MC23]
Length = 418
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 67/418 (16%), Positives = 125/418 (29%), Gaps = 61/418 (14%)
Query: 33 GGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSISYGTIKIICRKKYFDI 91
GGA+RD L+ D+D A P++ + + P G +++ D
Sbjct: 2 GGALRDLLLGERPLDLDFA-AWDPEKAAEEAKGRYGGTLFPLDPERGHYRLVAGALTLDF 60
Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151
T L + D LRRD+ +NAL +G+V G DL R +
Sbjct: 61 TPL---------------EGSPEEDLLRRDYRVNAL-LWLKGRVFGLPGAEEDLNRRLLV 104
Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS----SERIWS 207
+ + D LR LR R A G + A+ + S ER+
Sbjct: 105 PV--QEENLYADPLRSLRGVRLAATLGLGLPPETRRALARHARFLQENPSALPARERVRE 162
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------SLDQLSQVIEAEQVFEWKID 261
E+ KLL K + + G+ ++ + + L V +
Sbjct: 163 ELAKLLLCKRAPFGLHLLERTGLLGIYLPELTHLVGLHQGGVHHLPAWEHTLSVLFHLLW 222
Query: 262 SL-----------------------------LRFIVLISWQDKKSILSMAKKFSLPREIR 292
+ + + P+E+
Sbjct: 223 LWPEAPLEARLAALYHDAGKPLTRRYDPEVGRYRFFGHAEVGAEMAKAALFWLRFPKEVV 282
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
+ ++ +++ ++ D + + + +L+
Sbjct: 283 EKAAHLVRRHMDRPPEGTKALRRFYFKRRDLLPALPYLMAADRLAAKGVEAEAWPLLEAY 342
Query: 353 SDIIHWKKPL-FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ + P L+G++V+ G+ PG VG L + S +E LL
Sbjct: 343 REALKTPLPQEPLLSGEEVMALLGLRPGPLVGEALRALLEAQAEGSVASQEEARRFLL 400
>gi|254361074|ref|ZP_04977219.1| tRNA adenylyltransferase [Mannheimia haemolytica PHL213]
gi|153092560|gb|EDN73615.1| tRNA adenylyltransferase [Mannheimia haemolytica PHL213]
Length = 416
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 63/345 (18%), Positives = 119/345 (34%), Gaps = 23/345 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD L+ L V+D D ++++ + P + +
Sbjct: 3 IYLVGGAVRDQLLGLPVKDRDFLVVGATAEQLLAQGFQQVGADFPVF--------LHPET 54
Query: 88 YFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R + +G + D +RRD TINA+ D+ + D GG+
Sbjct: 55 KEEYALARQERKNGNGYNGFICDFSPNVTLEQDLIRRDLTINAIAQDENSTLFDPYGGVQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL NR ++ + ED LR+LR RF A + + + LK
Sbjct: 115 DLENRLLRHV---SPAFSEDPLRVLRVARFAARFHSFGFTIAPETLKLMREMVQSGELKH 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L++ER+W E K E NP + G K +F ++ + E
Sbjct: 172 LTAERVWLETQKAFETDNPHVYFDILRLIGALKVLFPELDRLFGVPQPPQHHPEIDSGKH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+L+ ++ + + + ++ + I ++L
Sbjct: 232 TLMVLQQAKRLAKKAENPTALLFAALCHDLGKGLTPADILPHHYGHEVKGIQPTRELANR 291
Query: 320 YGDKVMIAKLKIF---LALHYNNLTHQDTCFILQVLSDIIHWKKP 361
I + H + + ++++ + + W+KP
Sbjct: 292 LKIPTEIKDFALLVTEYHTHCHKMAELRPETVIKLFNSLDVWRKP 336
>gi|323142936|ref|ZP_08077646.1| putative polynucleotide adenylyltransferase [Succinatimonas hippei
YIT 12066]
gi|322417289|gb|EFY07913.1| putative polynucleotide adenylyltransferase [Succinatimonas hippei
YIT 12066]
Length = 423
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 65/322 (20%), Positives = 122/322 (37%), Gaps = 23/322 (7%)
Query: 39 SLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL 98
L+ +D DI+T P++V R+F +R + + ++ ++ ++TT RS +
Sbjct: 1 MLLGKVPKDFDISTNATPEQVHRLFRNSRI----IGRRFKIVHVVFGQEIIEVTTFRSAV 56
Query: 99 ITDGRYAKVV-----------FTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLR 146
+ ++ + + + D+ RRDFTINA+Y D +ID+ GGL DL
Sbjct: 57 NGNLGRNQIQNDDGMLIRDNSYGKTLEEDATRRDFTINAIYYDISNFTLIDFHGGLYDLN 116
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
N I IGD H R ED +R++R RF A G I L +S+ R++
Sbjct: 117 NGIIDIIGDPHTRYQEDPVRMIRAVRFSAKLGF-KISKRTADPIKTHSALLLNVSNARMF 175
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
E+NKL + L + + + G+F +F + ++ Q +
Sbjct: 176 DEVNKLFLTGHGLQSFHKLRDFGLFNLLFPGLDGFIENKDYQAFVEYALASSD------Q 229
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
++ L R + +Q + + + ++ +
Sbjct: 230 RFAQQKRNMPHFLYTIMFLGKFRALMIKHYELNESRIHQVADDVIADEICQEMLMEQNAV 289
Query: 327 AKLKIFLALHYNNLTHQDTCFI 348
L ++ L +
Sbjct: 290 TALPWQVSADIRKLLKSQNELL 311
>gi|162286726|ref|YP_001085363.2| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter baumannii ATCC 17978]
gi|226702127|sp|A3M767|CCA_ACIBT RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|193077880|gb|ABO12761.2| tRNA nucleotidyl transferase [Acinetobacter baumannii ATCC 17978]
Length = 412
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 60/344 (17%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ Q+ D + P+ ++ P + + +
Sbjct: 2 QVYLVGGAVRDYLLGHPYQEKDYVVVGATPEHMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ DQ GK+ D GG
Sbjct: 54 TKEEYALARTERKSGQGYHGFQFFTDTTVSLEDDLIRRDLTINAIAMDQDGKIYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
NDL N+ ++ + ED LR+LR RF A Y +
Sbjct: 114 NDLENKILRHV---SEAFAEDPLRVLRVARFAARYFPYGFQIAPETLQLMQTMADSGELD 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E ++ L + + N G K +F ++ + E
Sbjct: 171 ALTPERVWKETSRALMENHADIYFQTLRNCGALKHLFPEIDALFGVPQRPEYHPEVDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L+ S ++ + + + + ++ +
Sbjct: 231 HTLMSLQ-QACKSNYSLDVRFAVLVHDLGKALTPAEELPRHIMHEERGIKPVTQLCERLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + + ++L + ++P
Sbjct: 290 VPTQTKQLALSVCKEHLKCHQIMSLKPGTLWRLLQRLDVLRRPE 333
>gi|219882626|ref|YP_002477790.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Arthrobacter chlorophenolicus A6]
gi|219861632|gb|ACL41973.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Arthrobacter chlorophenolicus A6]
Length = 557
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 73/480 (15%), Positives = 142/480 (29%), Gaps = 79/480 (16%)
Query: 1 MVSIVQHKWFHD-----SDLINILSLLNKGEDKSCIVGGAVRDSLMNL------SVQDID 49
M ++ D + +L L + IVGGAVRD L++L D+D
Sbjct: 28 MTLHPVTEFIPDLIDLTPETRQVLDSLRAAGGRPLIVGGAVRDGLLSLTQGGTVDSMDVD 87
Query: 50 IATTILP-DRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV- 107
I L + V + V S+G + FD+ R D T +
Sbjct: 88 IEVYGLSKEEVRKALP---GDVNEFGQSFGVFNTSLNGQDFDVALPRQDNKTGDGHRGFV 144
Query: 108 ---VFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILED 163
++ RRDFT+NA+ D + +++D +GG DL ++ G + ED
Sbjct: 145 VDTDPNMPFEVAFARRDFTMNAMGWDAESGELVDPLGGRADLEAGILRHTG---DKFQED 201
Query: 164 YLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223
LR+LR +F + + + A ++ E + A+
Sbjct: 202 PLRVLRGVQFAGRFNMELAPETAELCREMAPTFHQMHKDGIWKQFRKLSTEGTHISKALE 261
Query: 224 HMYNGGIFKE---------------IFLD-----------------VQEISLDQ----LS 247
++ G + + + LD+ +
Sbjct: 262 ALHASGWEQHFPGLAATRGVPQDLTWHPEGPVHVHLGMAGDQAARIARRDGLDEEETSIL 321
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKS-----ILSMAKKFSLPREIRYFLISFFNCN 302
+ F + + I+ ++ P+ ++ +
Sbjct: 322 VLAAISHDFGKAHSTKIDENGRITSGGHHETGVAPAKDFLERIGAPQRFHEKILPLIREH 381
Query: 303 FNQK-----TLSIPEIKKLFYLY----GDKVMIAKLKIFLALHYNNLTHQDTCF-----I 348
T+S +++L G + ++ A
Sbjct: 382 MCHNPGGEATVSDSAVRRLLRRLDNAGGGPTLKQWSQLVEADKAGRGAGARRSRNYVPDW 441
Query: 349 LQVLSDIIHWKKP-LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
L + I + K L G + + GIP G I+ ++ + +F +
Sbjct: 442 LAIADRIGNEKAVGKAMLKGHHLAEAGIPRGPMWAIIVAQSEEAQDDGAFADEEGAREWF 501
>gi|304312390|ref|YP_003811988.1| tRNA nucleotidyltransferase [gamma proteobacterium HdN1]
gi|301798123|emb|CBL46345.1| tRNA nucleotidyltransferase [gamma proteobacterium HdN1]
Length = 445
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 70/365 (19%), Positives = 125/365 (34%), Gaps = 37/365 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+N + D D P ++ + + + P + K
Sbjct: 2 QIFLVGGAVRDQLINKTTHDRDWVVVGASPAEMLALGYQQVGRDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ T Y + D LRRD TINA+ + G +ID GG
Sbjct: 54 SKEEHALARTERKTAAGYGGFDCYTGSDVTLEEDLLRRDLTINAMAQTEDGTIIDPYGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED LR+LR RF A Y + +I ++
Sbjct: 114 RDLEARILRHV---SPAFSEDPLRVLRVARFQARYANDGFRIADETLALMQTIVTNGEIE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+WSE + L +P + G + ++ + + E
Sbjct: 171 HLTAERVWSETARALLEPSPQRYFETLRECGALAILLPELNILWGIPQPEKYHPEIDTGV 230
Query: 259 KIDSLLRFIVLIS-------------WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
L+ + Q + + M + + +
Sbjct: 231 HTMMALQQGTRLCERLADSLPEDQSITQTQAATALMYAILTHDLGKGLTPRHEWPTHHGH 290
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLAL---HYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ LS K+ G + +L A H + +++ L + + ++P
Sbjct: 291 ERLSAHLANKVSDRLGVPALCRQLAAKTAEYHTHCHRAFELRPATVMRTLEALDYLRRPA 350
Query: 363 FPLTG 367
F L G
Sbjct: 351 F-LNG 354
>gi|325276033|ref|ZP_08141849.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas sp. TJI-51]
gi|324098831|gb|EGB96861.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas sp. TJI-51]
Length = 368
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 72/371 (19%), Positives = 120/371 (32%), Gaps = 29/371 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGAVRD L+ V DID + ++ P + + K
Sbjct: 3 IYKVGGAVRDRLLGRPVSDIDWLVVGASVEEMLAK------GYRPVGADF--PVFLHPKT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y F + D +RRD TINA+ D+ G+V D G
Sbjct: 55 GEEYALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEAGQVHDPYQGAR 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS- 202
DL R ++ + ED LR+LR RF A Y + +
Sbjct: 115 DLDQRLLRHV---SPAFAEDPLRVLRVARFAARYAPLGFRVADETLELMRQISASGELQA 171
Query: 203 ---ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
ER W EI + L P ++ +E+ ++ + EQ
Sbjct: 172 LTAERSWKEIERALMEAQPQVFFQVLHACAALRELLPELDSAP----QALAALEQAAAHH 227
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+R+ L+ SI ++ ++ PRE + + C L L
Sbjct: 228 QPLHVRWACLLHQLPPASIKTVNQRLKAPRECQELALLTGECLVQADQALQLPAMSLLAL 287
Query: 320 YGDKVM---IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376
+ + + FLA Q + + +V+ G+
Sbjct: 288 LQKFDVYRRPQRFEDFLAACEMVALGNCKAGYPQG-EYLRGAAAAARAVDVKPLVQAGLT 346
Query: 377 PGKKVGNILVH 387
G+ +G L
Sbjct: 347 -GQALGEALKA 356
>gi|145627734|ref|ZP_01783535.1| hypothetical protein CGSHi22121_01815 [Haemophilus influenzae
22.1-21]
gi|145639916|ref|ZP_01795516.1| hypothetical protein CGSHiII_00562 [Haemophilus influenzae PittII]
gi|144979509|gb|EDJ89168.1| hypothetical protein CGSHi22121_01815 [Haemophilus influenzae
22.1-21]
gi|145271007|gb|EDK10924.1| hypothetical protein CGSHiII_00562 [Haemophilus influenzae PittII]
gi|309751094|gb|ADO81078.1| tRNA nucleotidyltransferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Haemophilus influenzae R2866]
Length = 416
Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 69/347 (19%), Positives = 119/347 (34%), Gaps = 25/347 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L V+D D I P ++ + + + + K
Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSL------GYLQVGKDF--PVFLNPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ + G++ID GG
Sbjct: 54 TKEEYALARTERKSSTGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL NR ++ I ED LR+LR RF A Y S+ A+
Sbjct: 114 QDLENRILRHI---SPAFSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELAQSGELQ 170
Query: 203 ERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ K L KNP ++ G +F ++ + E
Sbjct: 171 HLTAERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEIDALYGVPNPVKHHPEVDSFI 230
Query: 259 KIDSLLRFIVLI----SWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEI 313
+L+ V + +K ++ A L + + I + + +
Sbjct: 231 HTMLVLKQAVNLTENNPILNKSAVRFAAICHDLGKALTPQNILPHHYGHEQAGIKPTRSL 290
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
K + +A+L H + ++ + + W+K
Sbjct: 291 CKRLKVPSYFQELAELTCEFHTHIHKAFELRAETVITLFNRFDVWRK 337
>gi|260556738|ref|ZP_05828956.1| LOW QUALITY PROTEIN: tRNA nucleotidyltransferase/poly(A) polymerase
[Acinetobacter baumannii ATCC 19606]
gi|260409997|gb|EEX03297.1| LOW QUALITY PROTEIN: tRNA nucleotidyltransferase/poly(A) polymerase
[Acinetobacter baumannii ATCC 19606]
Length = 412
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ Q+ D + P+ ++ P + + +
Sbjct: 2 QVYLVGGAVRDYLLGHPYQEKDYVVVGATPEHMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ DQ GK+ D GG
Sbjct: 54 TKEEYALARTERKSGQGYHGFQFFTDTTVSLEDDLIRRDLTINAIAMDQDGKIYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
NDL N+ ++ + ED LR+LR RF A Y +
Sbjct: 114 NDLENKILRHV---SEAFAEDPLRVLRVARFAARYFPYGFQIAPETLQLMQTMADSGELD 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E ++ L + + + G K +F ++ + E
Sbjct: 171 ALTPERVWKETSRALMENHADIYFQTLRDCGALKHLFPEIDALFGVPQRPEYHPEVDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L+ S ++ + + + + ++ +
Sbjct: 231 HTLMSLQ-QACKSNYSLDVRFAVLVHDLGKALTPAEELPRHIMHEERGIKPVTQLCERLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + + ++L + ++P
Sbjct: 290 VPTQTKQLALSVCKEHLKCHQIMSLKPGTLWRLLQRLDVLRRPE 333
>gi|167917152|ref|ZP_02504243.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia pseudomallei BCC215]
Length = 413
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 67/350 (19%), Positives = 119/350 (34%), Gaps = 31/350 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGA+RD+L+ L V+D D + P+++ + P + +
Sbjct: 2 KIYAVGGAIRDALLGLPVRDRDYVVVGATPEQMAA------QRFRPVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VI 136
+ + R++ T Y F + D +RRD TINA+ + V+
Sbjct: 54 THEEYALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVV 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK- 195
D GG DLR + + +GDA +ED +RILR RF A + E + D
Sbjct: 114 DPFGGQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALMRAMVDA 170
Query: 196 -GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W E+ + L P + G I ++ + E
Sbjct: 171 GEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALARILPEIDALFGVPQRADYHPEV 230
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ ++ S+ + + + + +K
Sbjct: 231 DTGVHVMMVIDHAAKQG----YSLAVRFAALTHDLGKATTPADVLPRHIGHEGRGVDLLK 286
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++L +KP
Sbjct: 287 PLCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRLLERADALRKP 336
>gi|71891853|ref|YP_277582.1| tRNA CCA-pyrophosphorylase [Candidatus Blochmannia pennsylvanicus
str. BPEN]
gi|123641186|sp|Q493X4|CCA_BLOPB RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|71795959|gb|AAZ40710.1| tRNA nucleotidyltransferase [Candidatus Blochmannia pennsylvanicus
str. BPEN]
Length = 408
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 65/340 (19%), Positives = 125/340 (36%), Gaps = 19/340 (5%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD+L+ L VQ+ D P ++ I + K P + + +
Sbjct: 4 YLVGGAVRDALLKLPVQEKDWVVVGSSPQEMLNIGYEQVGKDFPVF--------LHPESH 55
Query: 89 FDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ G + + D RRD TINA+ D G +ID G D
Sbjct: 56 EEYALARTERKSGQGYTGFICHTAPSITIEEDLYRRDLTINAMAYDSHGNLIDPYHGQRD 115
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDGLVASIKAKKGLKILSS 202
+ ++ + H ED LR+LR RF A + N I + L+ + L LS
Sbjct: 116 I---KLRLLRHVSHTFHEDPLRVLRVARFAARFAHMNFAIAPETLILMKQMIHELLSLSP 172
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
ERIW+E K L NP + + G K +F ++ + + + +
Sbjct: 173 ERIWTETKKALITDNPQVYFTVLRHCGALKILFPELDALFDIPTPTQYCTKINTGYYTMT 232
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
L ++ + + + + + + + +++ +
Sbjct: 233 TLSKAAYLTDDISVRFSVLCRDLGKGIPLNKINKNTKHHDHRKLGITLIHNLCNRFKIPH 292
Query: 323 KV-MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
++ +K+ + N+ ++ + W++P
Sbjct: 293 EIRNFSKITSEYHDYLYNVKILKPEMLMTLFHVFDCWRRP 332
>gi|229846289|ref|ZP_04466401.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Haemophilus influenzae 7P49H1]
gi|229811293|gb|EEP47010.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Haemophilus influenzae 7P49H1]
Length = 416
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 67/348 (19%), Positives = 115/348 (33%), Gaps = 23/348 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD L+ L V+D D + + + K
Sbjct: 2 KIYLVGGAVRDQLLGLPVKDRDWIVVG-----ADHATLLSLGYQQVGKDF--PVFLNPKT 54
Query: 88 YFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ G T + D +RRD TINA+ + G++ID GG
Sbjct: 55 KEEYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203
DL NR ++ I ED LR+LR RF A Y ++ + L
Sbjct: 115 DLENRILRHI---SPAFSEDPLRVLRVARFAARYHSLGFKIASETLALMTELALSGELQH 171
Query: 204 RIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
+ K L KNP ++ G +F ++ + E
Sbjct: 172 LTAERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEIDALYGVPNPVKHHPEVDSFIH 231
Query: 260 IDSLLRFIVLI----SWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEIK 314
+L+ V + +K ++ A L + + I + + +
Sbjct: 232 TMLVLKQAVNLTENNPILNKSAVRFAAICHDLGKALTPQNILPHHYGHEQAGIKPTRSLC 291
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
K + +A+L H + ++ + + W+KP
Sbjct: 292 KRLKVPSYFQELAELTCEFHTHIHKAFELRAETVITLFNRFDVWRKPQ 339
>gi|301170365|emb|CBW29971.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Haemophilus influenzae 10810]
Length = 416
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 71/349 (20%), Positives = 122/349 (34%), Gaps = 25/349 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTIL-PDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L++L V+D D P ++ + + K P + K
Sbjct: 2 KIYLVGGAVRDQLLDLPVKDRDWIVVGTDPATLLSLGYQQVGKDFPVF--------LNPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ + G++ID GG
Sbjct: 54 TKEEYALARTERKSSTGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL NR ++ I ED LR+LR RF A Y ++ A+ L
Sbjct: 114 QDLENRILRHI---SPAFSEDPLRVLRVARFTARYHSLGFKIASETLALMAELALSGELQ 170
Query: 203 ERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ K L KNP ++ G +F ++ + E
Sbjct: 171 HITAERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEIDALHGVPNPVKHHPEVDSFI 230
Query: 259 KIDSLLRFIVLI----SWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEI 313
+L+ V + +K ++ A L + + I + + +
Sbjct: 231 HTMLVLKQAVNLTENNPILNKSAVRFAAICHDLGKALTPQNILPHHYGHEQAGIKPTRSL 290
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
K + +A+L H + ++ + + W+KP
Sbjct: 291 CKRLKVPSYFQELAELTCEFHTHIHKAFELRAETVITLFNRFDVWRKPQ 339
>gi|169795274|ref|YP_001713067.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter baumannii AYE]
gi|184158861|ref|YP_001847200.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter baumannii ACICU]
gi|213158062|ref|YP_002320113.1| tRNA nucleotidyl transferase [Acinetobacter baumannii AB0057]
gi|215482807|ref|YP_002325010.1| Multifunctional CCA protein [Acinetobacter baumannii AB307-0294]
gi|239502472|ref|ZP_04661782.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter baumannii AB900]
gi|301346881|ref|ZP_07227622.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter baumannii AB056]
gi|301510426|ref|ZP_07235663.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter baumannii AB058]
gi|301596783|ref|ZP_07241791.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter baumannii AB059]
gi|332850381|ref|ZP_08432701.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter baumannii 6013150]
gi|332871807|ref|ZP_08440242.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter baumannii 6013113]
gi|332875289|ref|ZP_08443121.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter baumannii 6014059]
gi|226702030|sp|B0VBE4|CCA_ACIBY RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702123|sp|B7GZN3|CCA_ACIB3 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702124|sp|B7I3L8|CCA_ACIB5 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|226702125|sp|B2HV23|CCA_ACIBC RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|169148201|emb|CAM86064.1| tRNA nucleotidyl transferase [Acinetobacter baumannii AYE]
gi|183210455|gb|ACC57853.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter
baumannii ACICU]
gi|213057222|gb|ACJ42124.1| tRNA nucleotidyl transferase [Acinetobacter baumannii AB0057]
gi|213988422|gb|ACJ58721.1| Multifunctional CCA protein [Acinetobacter baumannii AB307-0294]
gi|322507763|gb|ADX03217.1| cca [Acinetobacter baumannii 1656-2]
gi|323518773|gb|ADX93154.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter baumannii TCDC-AB0715]
gi|332730652|gb|EGJ61963.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter baumannii 6013150]
gi|332731215|gb|EGJ62514.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter baumannii 6013113]
gi|332736546|gb|EGJ67541.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter baumannii 6014059]
Length = 412
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ Q+ D + P+ ++ P + + +
Sbjct: 2 QVYLVGGAVRDYLLGHPYQEKDYVVVGATPEHMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ DQ GK+ D GG
Sbjct: 54 TKEEYALARTERKSGQGYHGFQFFTDTTVSLEDDLIRRDLTINAIAMDQDGKIYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
NDL N+ ++ + ED LR+LR RF A Y +
Sbjct: 114 NDLENKILRHV---SEAFAEDPLRVLRVARFAARYFPYGFQIAPETLQLMQTMADSGELD 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E ++ L + + + G K +F ++ + E
Sbjct: 171 ALTPERVWKETSRALMENHADIYFQTLRDCGALKHLFPEIDALFGVPQRPEYHPEVDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L+ S ++ + + + + ++ +
Sbjct: 231 HTLMSLQ-QACKSNYSLDVRFAVLVHDLGKALTPAEELPRHIMHEERGIKPVTQLCERLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + + ++L + ++P
Sbjct: 290 VPTQTKQLALSVCKEHLKCHQIMSLKPGTLWRLLQRLDVLRRPE 333
>gi|328471957|gb|EGF42834.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Vibrio
parahaemolyticus 10329]
Length = 406
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 59/342 (17%), Positives = 114/342 (33%), Gaps = 21/342 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + D D P+ ++ K P + K
Sbjct: 2 QVYLVGGAVRDQLLGIDSYDNDWVVVGATPEMMLAQGYTAVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + + D +RRD TINA+ D G++ D GG
Sbjct: 54 NKEEHALARTERKSGSGYTGFDCFFDPSVTLEEDLIRRDLTINAMAMDDSGQLYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
DL NR ++ + +ED LR+LR RF A +
Sbjct: 114 ADLNNRILRHV---SDAFVEDPLRVLRVARFAAKLASLGFTVAKETMQLMRDIADSGELN 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E +K L P + + + G + +++ + + E
Sbjct: 171 TLTPERVWQEWHKSLSTPRPDVFLSVLRDCGALAVVLPEIEALFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ +S + + + I ++ +
Sbjct: 231 HTLMVAEQAAKLSTSLPVRFAAQVHDLGKG-VTPESEWPSHKMHCHTGLKLIKKLCERVR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ + +A + + + I+++L+ W+K
Sbjct: 290 VPNEFKELALMVCEQHSNIHRAAELKPQTIIKILNKFDVWRK 331
>gi|253997358|ref|YP_003049422.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Methylotenera mobilis JLW8]
gi|253984037|gb|ACT48895.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Methylotenera mobilis JLW8]
Length = 402
Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 57/341 (16%), Positives = 122/341 (35%), Gaps = 19/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ IVGGAVRD L+ +++D D P++++ P + +
Sbjct: 2 QTYIVGGAVRDELLGYAIKDKDYVVVGSTPEQMVAA------GFRPVGKDF--PVFLHPV 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D RRD TINA+ + G+++D G+
Sbjct: 54 TQAEYALARTERKTAKGYKGFAVHASPEVTLEQDLARRDLTINAIAKSESGELVDPFNGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY--GEKNIDSDGLVASIKAKKGLKIL 200
D++ +T++ + +ED +RILR RF A + ++ L+ + + L
Sbjct: 114 ADIQAKTLRHV---SAAFVEDPVRILRIARFAARFTDFHVAPETLSLMQIMVDAGEVDAL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER+W EI K L P + G + I ++ ++ E +
Sbjct: 171 VVERVWQEIAKGLMESQPSRMFNVLRACGALQRIMPELDKLWGVPQPPQYHPEVDTGVHV 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
++ + ++ ++ + + + + + ++ K +
Sbjct: 231 MLVVDYAAQQNFTLPVRFAALMHDLGKGTTPQDI-LPRHIGHEERGVHLVKDLCKRLRVP 289
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
D +A + +LQ L + ++P
Sbjct: 290 NDCRELALMVTKFHGKLYQSLAMRPDTLLQFLIQLDAIRQP 330
>gi|294634621|ref|ZP_06713155.1| multifunctional CCA protein [Edwardsiella tarda ATCC 23685]
gi|291091951|gb|EFE24512.1| multifunctional CCA protein [Edwardsiella tarda ATCC 23685]
Length = 415
Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 112/344 (32%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD ++L+ D D P ++ + K P +
Sbjct: 2 KIYLVGGAVRDKYLHLTTHDRDWVVVGATPQCLLAQGYQQVGKDFPVF--------LHPH 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y + D LRRD TINA+ D G++ID GGL
Sbjct: 54 SKEEYALARTERKAGQGYTGFTTHFAPDVTLEQDLLRRDLTINAMAEDDTGRLIDPYGGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
+DL+ R ++ + +ED LR+LR RF A + + + + +
Sbjct: 114 DDLQQRWLRHV---SPAFVEDPLRVLRVARFAARFFSLGFRVAEPTLELMRQMAQQGELN 170
Query: 203 ERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ K L P + + G +F ++ + E
Sbjct: 171 HLTAERVWLETEKALAGPAPQVYFQVLRDCGALAILFPEIDRLFGVPAPVKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L +S +D + + + + E+ +
Sbjct: 231 HTLLTLAMATRLS-EDLAVRFAALTHDVGKGLTNPNFWPHHHGHGPAGVRLVRELCQRLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + +L++L I W++P
Sbjct: 290 IPNPLRDLAVLVAEYHDLIHTVDRLRPSTLLKLLDSIDVWRRPQ 333
>gi|261493599|ref|ZP_05990119.1| tRNA adenylyltransferase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261495437|ref|ZP_05991885.1| tRNA adenylyltransferase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261308942|gb|EEY10197.1| tRNA adenylyltransferase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261310781|gb|EEY11964.1| tRNA adenylyltransferase [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 416
Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 61/345 (17%), Positives = 117/345 (33%), Gaps = 23/345 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD L+ L V+D D ++++ + P + +
Sbjct: 3 IYLVGGAVRDQLLGLPVKDRDFLVVGATAEQLLAQGFQQVGADFPVF--------LHPET 54
Query: 88 YFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R + +G + D +RRD TINA+ D+ + D GG+
Sbjct: 55 KEEYALARQERKNGNGYNGFICDFSPNVTLEQDLIRRDLTINAIAQDENSTLFDPYGGVQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK----I 199
DL NR ++ + ED LR+LR RF A + + +
Sbjct: 115 DLENRLLRHV---SPAFSEDPLRVLRVARFAARFHSFGFTIAPETLKLMREMVQSGELEH 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L++ER+W E K E NP + G K +F ++ + E
Sbjct: 172 LTAERVWLETQKAFETDNPHVYFDILRLIGALKVLFPELDRLFGVPQPPQHHPEIDSGKH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+L+ ++ + + + ++ + I ++L
Sbjct: 232 TLMVLQQAKRLAKKAENPTALLFAALCHDLGKGLTPADILPHHYGHEVKGIQPTRELANR 291
Query: 320 YGDKVMIAKLKIF---LALHYNNLTHQDTCFILQVLSDIIHWKKP 361
I + H + + ++++ + + W+KP
Sbjct: 292 LKIPTEIKDFALLVTEYHTHCHKMAELRPETVIKLFNSLDVWRKP 336
>gi|319935311|ref|ZP_08009749.1| hypothetical protein HMPREF9488_00580 [Coprobacillus sp. 29_1]
gi|319809719|gb|EFW06120.1| hypothetical protein HMPREF9488_00580 [Coprobacillus sp. 29_1]
Length = 446
Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 78/443 (17%), Positives = 146/443 (32%), Gaps = 53/443 (11%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATT-ILPDRVMRIFSKTRYKVIP 72
I + + IVGG+VRD ++ S D+D+ + +++ + +K V+
Sbjct: 7 ARTIFDDILAQGGRVYIVGGSVRDVILKNSGEHDVDVEVYHMTYEQLHDLLAKYG--VVN 64
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALY 128
T I + K +D R + ++ + + RRD T+NAL
Sbjct: 65 TFGKMFAIMQLENLKGYDFALPRQEKKVGEKHQDFEVIINPELPLEKAVKRRDLTMNALM 124
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D Q + I + G D + D +ED LR+LR +F A + + +
Sbjct: 125 YDYQNEEIIDLCGGLDDIKKHQVRCVDP-QSFVEDPLRVLRIAQFIARFEMTVEEKTLDL 183
Query: 189 ASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIV-------------HMYNGGIFKEI 234
++G+ K LS ERI+ E K+L + P + +
Sbjct: 184 CYQMVQQGMLKHLSIERIYGEYCKILMSPRPSIGFEFLKRIKALPFYLSDLITTHQRLDY 243
Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS-------------- 280
+ + L + A + + L+ K + +
Sbjct: 244 HPEGDVFTHTMLVIDVAALTKHKTDAPLSFMWSCLLHDIGKPLVTTADGHAPQHNEAGVK 303
Query: 281 --MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY------GDKVMIAKLKIF 332
K ++ R ++ + + + ++ K L YL G M + I
Sbjct: 304 VFQKVKMIQSKKQRQYISTMIMYHMHLMNMARNHGKDLSYLRLLKKIDGKVSMNDLICIS 363
Query: 333 LALHYNNLT---HQDTCFILQVLSDIIHW--KKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
Q F + I + P + G +++ G K++ IL
Sbjct: 364 CCDKLGRGKVAQEQYDAFFTFIEDKIARLGMQAPQPLINGYILIQNGFQQNKQLKMILDE 423
Query: 388 CKQEWINSSFQLSQEDLHHLLRK 410
+ LSQE + L+K
Sbjct: 424 AYDLQLQG---LSQEKILRSLKK 443
>gi|90407232|ref|ZP_01215419.1| tRNA nucleotidyltransferase [Psychromonas sp. CNPT3]
gi|90311655|gb|EAS39753.1| tRNA nucleotidyltransferase [Psychromonas sp. CNPT3]
Length = 408
Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 66/343 (19%), Positives = 119/343 (34%), Gaps = 21/343 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGA+RD L++L V+D D + P ++ + K K P +
Sbjct: 2 QIFLVGGALRDKLLDLKVKDRDHVVVNATPKMLLDLGYKQVGKDFPVF--------LHPT 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y D RRD TINA+ GK+ID G
Sbjct: 54 TGEEYALARTERKNAPGYHGFDCYAGQDVSLVEDLQRRDLTINAMACSDDGKIIDPYHGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
NDL+N+ ++ + ED LR+LR RF A + S+ + L
Sbjct: 114 NDLKNKILRHV---SPAFCEDPLRVLRVARFAARFYHLGFRIASETLSLMRQLSLSGELE 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+SER+W E +K L +P + G +F +++ + + E
Sbjct: 171 SLTSERVWQETDKALATDDPQIYFSVLRECGALSILFPEIENLFGVPAPKRWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+++ +S + + L + I +
Sbjct: 231 HTLMVVKQATKLSNDNAFR-FACLVHDLGKALTPPELWPSHKGHGELGLKVIRAFCQRLK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + +A L ++ D +L ++ W+KP
Sbjct: 290 VPNEYRDLALLVSEHHTLIHSAVTLDAAILLNIMDKCDAWRKP 332
>gi|114330522|ref|YP_746744.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Nitrosomonas eutropha C91]
gi|122314471|sp|Q0AIP2|CCA_NITEC RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|114307536|gb|ABI58779.1| metal dependent phosphohydrolase [Nitrosomonas eutropha C91]
Length = 412
Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 63/341 (18%), Positives = 123/341 (36%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGG+VRD L+ L V+D D + P+ ++ + Y+ P + + +
Sbjct: 2 KIYRVGGSVRDELLGLPVKDQDYVVVGATPEDMI----RQGYR--PVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWK----ADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y + D RRD TINA+ D+ G +ID GG+
Sbjct: 54 THEQYALARTERKIARGYKGFAIYATPEVTLQEDLARRDLTINAIARDEAGNIIDPFGGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILS 201
DL+ ++ IG A +ED +R+LR RF A +G + ++ L+ I + L
Sbjct: 114 ADLQAGILRHIGPA---FVEDPVRVLRVARFAARFGFQVAPETFELMKEIVHTGETEALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W EI L ++P + I +V + E +
Sbjct: 171 AERVWQEIAHGLMEQHPSRMFHVLRECRALARILPEVDALFGVPQPAHAHPEIDTGIHVM 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
++ + + + + + + + ++ + +
Sbjct: 231 MVIDYAASQQYPLEVRFAGLTHDLGKG-TTPPDEWPRHIGHEARGVELVMDLCERIRVPR 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + I +L ++K +
Sbjct: 290 ESRDLALLVARFHGDVHRALELRPSTIADMLQATDAYRKKV 330
>gi|330812139|ref|YP_004356601.1| tRNA cytidylyltransferase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380247|gb|AEA71597.1| putative tRNA cytidylyltransferase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 408
Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 68/344 (19%), Positives = 116/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ + V DID + + ++ P + + K
Sbjct: 2 QIYKVGGAVRDRLLGIPVTDIDRVVVGATAEEMLAR------GFRPVGADF--PVFLDPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y VF + D +RRD TINA+ D G + D G
Sbjct: 54 SGEEYALARTERKSGRGYGGFVFHASPEVTLEEDLVRRDLTINAMAEDDHGNLTDPYHGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL R ++ + ED LR+LR RF A Y + +
Sbjct: 114 RDLEARVLRHV---SPAFAEDPLRVLRVARFAARYAPLGFKVADETLELMRQLSDSGELE 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
++ER W EI++ L K P I + + K + +V + + E
Sbjct: 171 ALTAERSWKEISRALMEKQPQVFIQVLRDCTALKVLMPEVDALFGVPQPEAHHPEIDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
S+L L + R+ + + I + + F
Sbjct: 231 HTLSVLEQAALHQQPLTVRWACLLHDLGKGLTPRHEWPRHIA-HEHTGLKLIKAVNERFK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D +A L H + +L++L +++P
Sbjct: 290 APRDCQELALLVGQYHTHGHRALELKASTLLELLQSFDVYRRPQ 333
>gi|262372149|ref|ZP_06065428.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter junii
SH205]
gi|262312174|gb|EEY93259.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter junii
SH205]
Length = 413
Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 56/344 (16%), Positives = 116/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + D + P++++ P + + K
Sbjct: 2 QVYLVGGAVRDHLLGHPYHEKDYVVVGATPEQLLA------DGFQPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ D+ G + D GG
Sbjct: 54 TKEEYALARTERKSGVGYHGFQFHTDKTVKLEEDLIRRDLTINAMAMDENGNIYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
+DL + ++ + +ED LR+LR RF A Y ++ ++
Sbjct: 114 DDLNQKILRHV---SDAFIEDPLRVLRVARFAARYTAYGFKIAEETLNLMSEIASSGELD 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E ++ L + + + K +F ++ + E
Sbjct: 171 ALTPERVWKETSRALMEDHADVYFQTLRDCNALKVLFPEIDALFGVPQRPEFHPEIDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
LR ++ ++ + + + + +I
Sbjct: 231 HTLMSLR-QACLANYALDVRYAVLVHDLGKALTPAEELPKHIMHEERGLKPVGDISDRLK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A + L + + + ++L + +KP
Sbjct: 290 VPTQLKNLALIVCKEHLKCHQAKNLKPGTLWRLLQRLDVLRKPE 333
>gi|253998183|ref|YP_003050246.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Methylovorus sp. SIP3-4]
gi|253984862|gb|ACT49719.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Methylovorus sp. SIP3-4]
Length = 407
Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 65/341 (19%), Positives = 118/341 (34%), Gaps = 19/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD+L+ L VQD D + P + + K P +
Sbjct: 2 QTFVVGGAVRDALLGLPVQDQDHVVVGSTPAEMEAAGFRRVGKDFPVF--------LHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y + D RRD TINA+ + G +ID G
Sbjct: 54 THEEYALARTERKTAKGYKGFEVHASPDVTLEEDLARRDLTINAIARAEDGSLIDPYHGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKIL 200
DL R ++ + ED +RILR RF A + E + + L + + L
Sbjct: 114 ADLEARILRHV---SPAFAEDPVRILRAARFAARFTEFTLAPETLALMQQMVADGEVDAL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER+W E+ K L P + G + IF ++ + E +
Sbjct: 171 VPERVWQELAKGLMEAKPSRMFEMLRACGALQRIFPELDRLWGVPQPAQHHPEIDTGVHV 230
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
++ + + ++ L + ++ K +
Sbjct: 231 MMVIDYAASQGYSLPVRFAALTHDLGKGTTPPDIWPRHIGHELRSVDL-LKDVVKRLRVP 289
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
D +A+L + + +L L ++ ++P
Sbjct: 290 NDCRELAQLVARFHGKVHQVNAMRPDTLLHFLQELDALRQP 330
>gi|195953814|ref|YP_002122104.1| Polynucleotide adenylyltransferase region [Hydrogenobaculum sp.
Y04AAS1]
gi|195933426|gb|ACG58126.1| Polynucleotide adenylyltransferase region [Hydrogenobaculum sp.
Y04AAS1]
Length = 821
Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 66/347 (19%), Positives = 116/347 (33%), Gaps = 20/347 (5%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+K +VGG VRD ++N DID D + + K + + ++
Sbjct: 454 KGEKLYLVGGVVRDIILNRPSYDIDFVFEGDIDLLEQSLKSHGIKTHR-FLGFNSVHFKY 512
Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ +I++ R + VV K D RRDFTIN L + V
Sbjct: 513 KGFKIEISSTRREYYEMAGAYPVVSKASLKEDLFRRDFTINTLLLSLDEEDFGTVIDYFG 572
Query: 145 LRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI-LS 201
N I +ED +RILR RF A K + +KG+
Sbjct: 573 ALNDIKNKIIRVLHPLSFIEDPVRILRAIRFEAKLNFKLSKDTKRLLEETLQKGMLKYAP 632
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNG--------GIFKEIFLDVQEISLDQLSQVIEAE 253
RI++E+ L+ K N I+++ + +L S E
Sbjct: 633 KGRIFNELKIALQEKEFENIFETYKKYGIIESLFEYKPDYIYIEEKSKNLKMFSDWYLLE 692
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313
+K S + + ++ S+ + K S P + F+ ++ +
Sbjct: 693 YKTPFKEASWI--FFWLLVKNAPSLEEILKGISAPAFVYKFVEINIKHIISEILKAK--K 748
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
Y+ + +L +F I++ LS + + K
Sbjct: 749 PSELYIILKPFSLEELALFA----TEGNVDVMNRIVKYLSHLKNLKP 791
>gi|153803633|ref|ZP_01958219.1| multifunctional CCA protein [Vibrio cholerae MZO-3]
gi|124120833|gb|EAY39576.1| multifunctional CCA protein [Vibrio cholerae MZO-3]
Length = 232
Score = 93.7 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 54/223 (24%), Positives = 88/223 (39%), Gaps = 20/223 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P +
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPN 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D G++ID GG
Sbjct: 54 SKEEHALARTERKTGVGYTGFACHYAPDVTLEDDLLRRDLTINAMAQDNSGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----K 198
DL + ++ + +ED LR+LR RF A + AK +
Sbjct: 114 RDLAAKVLRHV---SPAFVEDPLRVLRVARFAAKLHHLGFIVAEETMQLMAKIAQSGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
L++ER+W E +K L +P + + + G + ++ +
Sbjct: 171 HLTAERVWQEWHKSLSTHHPEVFLQVLRDCGALAVVLPEIDRL 213
>gi|89894039|ref|YP_517526.1| hypothetical protein DSY1293 [Desulfitobacterium hafniense Y51]
gi|89333487|dbj|BAE83082.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 531
Score = 93.7 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 66/282 (23%), Positives = 112/282 (39%), Gaps = 24/282 (8%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
IVGG VRD L+N +D+D I + + + + Y + + T+ + + +
Sbjct: 21 YIVGGTVRDHLLNRPGKDVDGIIPIPLEELEKHLREWGYHPLKIGAKHQTLSVFQQGQRM 80
Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRNR 148
DI D +AD+LRRDFTINA++ D + ++ID + G DL+N+
Sbjct: 81 DINFFDGD---------------LEADALRRDFTINAVFQDARTGELIDPLQGREDLKNK 125
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208
++ G+ R ED +RILR RF YG +I+ D ++ LK ++SER E
Sbjct: 126 LLRACGNPWERFREDPVRILRMVRFSVQYGM-DIEEDTFRSAQSLLPELKHVASERTSEE 184
Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLD---VQEISLDQLSQVIEAEQVF----EWKID 261
+ ++L +P I + G + +Q ++ ++ E
Sbjct: 185 LGRILTLADPAAGIRLLNELGYLTLYLPELVRLQGLAQNRYHTKDAWEHTLQVLANTPPQ 244
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
+LR L K + S
Sbjct: 245 PILRLAGLFHDLGKWEVASRECYVWGKCWAEDKGYYIGEYRI 286
>gi|68249804|ref|YP_248916.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Haemophilus influenzae 86-028NP]
gi|145633006|ref|ZP_01788738.1| hypothetical protein CGSHi3655_05574 [Haemophilus influenzae 3655]
gi|145635112|ref|ZP_01790818.1| tRNA nucleotidyltransferase [Haemophilus influenzae PittAA]
gi|148826131|ref|YP_001290884.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Haemophilus influenzae PittEE]
gi|229844786|ref|ZP_04464924.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Haemophilus influenzae 6P18H1]
gi|166233856|sp|A5UCK0|CCA_HAEIE RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|68058003|gb|AAX88256.1| tRNA nucleotidyltransferase [Haemophilus influenzae 86-028NP]
gi|144986232|gb|EDJ92811.1| hypothetical protein CGSHi3655_05574 [Haemophilus influenzae 3655]
gi|145267720|gb|EDK07718.1| tRNA nucleotidyltransferase [Haemophilus influenzae PittAA]
gi|148716291|gb|ABQ98501.1| hypothetical protein CGSHiEE_05680 [Haemophilus influenzae PittEE]
gi|229812167|gb|EEP47858.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Haemophilus influenzae 6P18H1]
Length = 416
Score = 93.7 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 67/348 (19%), Positives = 115/348 (33%), Gaps = 23/348 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD L+ L V+D D + + + K
Sbjct: 2 KIYLVGGAVRDQLLGLPVKDRDWIVVG-----ADHATLLSLGYQQVGKDF--PVFLNPKT 54
Query: 88 YFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ G T + D +RRD TINA+ + G++ID GG
Sbjct: 55 KEEYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203
DL NR ++ I ED LR+LR RF A Y ++ + L
Sbjct: 115 DLENRILRHI---SPAFSEDPLRVLRVARFAARYHSLGFKIASETLALMTELALSGELQH 171
Query: 204 RIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
+ K L KNP ++ G +F ++ + E
Sbjct: 172 LTAERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEIDALHGVPNPVKHHPEVDSFIH 231
Query: 260 IDSLLRFIVLI----SWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEIK 314
+L+ V + +K ++ A L + + I + + +
Sbjct: 232 TMLVLKQAVNLTENNPILNKSAVRFAAICHDLGKALTPQNILPHHYGHEQAGIKPTRSLC 291
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
K + +A+L H + ++ + + W+KP
Sbjct: 292 KRLKVPSYFQELAELTCEFHTHIHKAFELRAETVITLFNRFDVWRKPQ 339
>gi|51246762|ref|YP_066646.1| poly(A) polymerase [Desulfotalea psychrophila LSv54]
gi|50877799|emb|CAG37639.1| related to poly(A) polymerase [Desulfotalea psychrophila LSv54]
Length = 501
Score = 93.7 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 73/482 (15%), Positives = 154/482 (31%), Gaps = 95/482 (19%)
Query: 12 DSDLI-NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
D++ + ++ + + + + GG VRD + S +D+D+ T R + +
Sbjct: 29 SPDIVTALFAVSRQLDAEVWVAGGPVRDYFLGRSAKDLDLVTGAGAIDFCRRLLRQLGEG 88
Query: 71 IPTSISYG---TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
+S G +I+ R + DI++ R+ + D RDFT+NA+
Sbjct: 89 SLVPLSEGDEEACRIVYRHEIVDISSFRASAS------------SLEEDLALRDFTLNAM 136
Query: 128 YADQQG---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ +D + + + K + D LRILR FRF + + D
Sbjct: 137 ALPLSTLRGEKVDLIDPFSGRDDLADKILRPLPEAFGRDPLRILRAFRFQS-LFSLSFDP 195
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---- 240
A I + L +++ERI +E++ L + L A+ M + GI + + ++ +
Sbjct: 196 AIAPAIIAHRHLLSGVAAERISAELDATLMGTSALEALAGMEDLGILELLLPELSDGRDI 255
Query: 241 ------------ISLDQLSQVIEA---------------EQVFEWKIDSLLRFIVLISWQ 273
SL ++ K L + L+
Sbjct: 256 LQPAAHHLDVYGHSLACFEKMHWLLAGGVMSFVSREELDLATLAKKTRLCLCWAALLHDV 315
Query: 274 DKKSILSMA-----------------------KKFSLPREIRYFLISFFNCNFNQKTLSI 310
K + + E++ + + + L
Sbjct: 316 GKPGSRDIRATDGRITFYNHDERGARIVAKIGTRLRWSNEVKDAVARLVAMHMHPFHLCA 375
Query: 311 PEIKK--------LFYLYGDKVMIAKLKIFLALHY--------NNLTHQDTCFILQVLSD 354
+ Y +++ + A + + +S
Sbjct: 376 VQQSGEVSPRAVLRLYRRAQELLQPLFLLAFADSLASQGEGRPAEMEQDIALLYRRTMSV 435
Query: 355 IIHWKKPLFP----LTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+P+ LTG D++ ++ + PG G+IL ++ + + L + +
Sbjct: 436 YYEKIRPVLLGEKILTGRDILREFSLDPGPLYGDILTKVEELRVEGELATEADALAWVKK 495
Query: 410 KL 411
L
Sbjct: 496 YL 497
>gi|219668423|ref|YP_002458858.1| polynucleotide adenylyltransferase region [Desulfitobacterium
hafniense DCB-2]
gi|219538683|gb|ACL20422.1| Polynucleotide adenylyltransferase region [Desulfitobacterium
hafniense DCB-2]
Length = 529
Score = 93.7 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 66/282 (23%), Positives = 111/282 (39%), Gaps = 24/282 (8%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
IVGG VRD L+N +D+D I + + + + Y + + T+ + + +
Sbjct: 19 YIVGGTVRDHLLNRPGKDVDGIIPIPLEELEKHLREWGYHPLKIGAKHQTLSVFQQGQRM 78
Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRNR 148
DI D +AD+LRRDFTINA++ D + ++ID + G DL N+
Sbjct: 79 DINFFDGD---------------LEADALRRDFTINAVFQDARTGELIDPLQGREDLENK 123
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208
++ G+ R ED +RILR RF YG +I+ D ++ LK ++SER E
Sbjct: 124 LLRACGNPWERFREDPVRILRMVRFSVQYGM-DIEEDTFRSAQSLLPELKHVASERTSEE 182
Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLD---VQEISLDQLSQVIEAEQVF----EWKID 261
+ ++L +P I + G + +Q ++ ++ E
Sbjct: 183 LGRILTLADPAAGIRLLNELGYLTLYLPELVRLQGLAQNRYHTKDAWEHTLQVLANTPPQ 242
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
+LR L K + S
Sbjct: 243 PILRLAGLFHDLGKWEVASRECYVWGKCWAEDKGYYIGEYRI 284
>gi|123438730|ref|XP_001310144.1| polyA polymerase family protein [Trichomonas vaginalis G3]
gi|121891901|gb|EAX97214.1| polyA polymerase family protein [Trichomonas vaginalis G3]
Length = 458
Score = 93.7 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 75/446 (16%), Positives = 172/446 (38%), Gaps = 49/446 (10%)
Query: 12 DSDLINILS----LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI-----LPDRVMRI 62
D D+I I+ ++ + I GG VRD +M DIDIA + D ++ +
Sbjct: 19 DKDVIEIIKKTIDAISPKKVIVRIAGGWVRDKIMGRENDDIDIAISGATCNEFSDAMVSV 78
Query: 63 F----SKTRYKVIPTSISY-GTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD 116
+ + + + T ++ + + DI +LRS L ++G + +
Sbjct: 79 LGPNTKRVLLEANHEQLKHIDTARVCLFHDFWLDICSLRSALYSEGEKLEGTAV----SA 134
Query: 117 SLRRDFTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+L RDF++NA++ + Q I+ G+ ++++ I+ A +D RI+R FRF A
Sbjct: 135 ALHRDFSMNAIFFNVQTMKIEDYVNGVQSIKDKIIRTPIPAMQDFTDDPNRIIRCFRFVA 194
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
Y K ++ ++ +R+ +E+ KL+ + + A+ ++ N G+ +F
Sbjct: 195 KYDFKIDPQIYEAIPKIIPLFMRNIAKDRVATELIKLMHSDSSFLALENLINSGMLNPVF 254
Query: 236 LDVQEISLD------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI------LSMAK 283
SLD ++ + + E E + +L F + K +
Sbjct: 255 DPESLWSLDKEETLKRIRRAHQIEPNLEGENKMILYFAAIFLPLVDKDTIPDPAKKNKFT 314
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL------YGDKVMIAKLKIFLALHY 337
+R + + +K + + Y G + +++ ++ +
Sbjct: 315 SAVHYAIVRAMKLQNVLADNVKKIHLGFSLVEAIYKGELNRVTGGRFVMSVGPLYKLVRP 374
Query: 338 NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-------YGIPPGKKVGNILVHCKQ 390
+ + F + L+ I +K ++ YG+ PG + +++
Sbjct: 375 LLMDDELLKFYDEKLNPFIVAEKLEKSYEMKQLMDGVSLANIYGVKPGPVLKDLIEEMIN 434
Query: 391 EWINSSFQLSQEDLHHLLRKLIASSQ 416
+++ + S + + ++ + +
Sbjct: 435 WQLSNPNRSSDD----YKKYILENKK 456
>gi|330818592|ref|YP_004362297.1| Multifunctional CCA protein [Burkholderia gladioli BSR3]
gi|327370985|gb|AEA62341.1| Multifunctional CCA protein [Burkholderia gladioli BSR3]
Length = 417
Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 65/350 (18%), Positives = 123/350 (35%), Gaps = 31/350 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGA+RD L+ + VQD D + P++ + Y+ P + + +
Sbjct: 2 RIYAVGGAIRDELLGVPVQDRDYVVVGATPEQ----LAAQGYR--PVGKDF--PVFLHPR 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VI 136
+ + R++ T Y F + D RRD +INA+ + V+
Sbjct: 54 THEEYALARTERKTAAGYHGFQFYFAPDVTLEEDLARRDLSINAMARELSPDGSLVGPVV 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK- 195
D G DL + + +G A +ED +RILR RF A + + + L +
Sbjct: 114 DPFDGRADLAAKRFRHVGPA---FVEDPVRILRIARFAARFADFTVAPGTLALMREMVTA 170
Query: 196 -GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W E+++ L P + G I +V + A+
Sbjct: 171 GEVDALVPERVWQELSRGLMEAKPSRMFEVLRECGALARILPEVDAL----FGVPQRADY 226
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
E + +V + + ++ + + + S+ +K
Sbjct: 227 HPEVDTGVHVMMVVDYAARHGYTLPVRFAALTHDLGKATTPEHVLPRHIGHEGRSVDLLK 286
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++L +KP
Sbjct: 287 PLSERLRVPNECRDLALLVAREHGNLHQVMKMGAAALVRLLERADALRKP 336
>gi|330891188|gb|EGH23849.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae
pv. mori str. 301020]
Length = 409
Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 77/413 (18%), Positives = 133/413 (32%), Gaps = 59/413 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGTSTE--DMLVK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARILRHV---SPAFAEDPLRVLRVARFAARYARYGFTIAPETLGLMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L++ER W EI++ L + P I +++ G KE+ +V+ + E
Sbjct: 172 LTAERSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ S+L + + + + I + + F +
Sbjct: 232 VLSVLEQSAIHKHPLTVRWACLLHDLGKGLTPEAEWPRHIA-HEHTGLHLIKAVNERFRV 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369
+ +A L H + +L++L +++P G
Sbjct: 291 PRECQELALLVGQYHTHGHRALELKPSTLLELLQSFDVYRRPQRFEEFIAACEMDARGRH 350
Query: 370 ---------------------------VVKYGIPPGKKVGNILV--HCKQEWI 393
+++ G GK++G+ L K I
Sbjct: 351 GFEQRSYPQADYLRGAAQAARTVSVQPLLEKGFK-GKELGDALKNERLKALKI 402
>gi|262376603|ref|ZP_06069831.1| tRNA nucleotidyl transferase [Acinetobacter lwoffii SH145]
gi|262308313|gb|EEY89448.1| tRNA nucleotidyl transferase [Acinetobacter lwoffii SH145]
Length = 411
Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 58/347 (16%), Positives = 115/347 (33%), Gaps = 27/347 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + D + P +++ + P + + +
Sbjct: 2 QVYLVGGAVRDHLLGHPYHEKDYVVVGATPAQMLDL------GYQPVGKDF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + + D +RRD TINA+ D G+V D GG
Sbjct: 54 TKEEYALARTERKSGAGYHGFEFHTDVSVTLEQDLIRRDLTINAMAMDDAGQVYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL NR ++ + +ED LR+LR RF A Y ++ +
Sbjct: 114 QDLENRILRHV---SDAFVEDPLRVLRIARFAARYTSAGFVIADETLALMQRLTESGELN 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E ++ L ++ + G K +F ++ + E
Sbjct: 171 ALTPERVWKETSRALSERHADVYFEVLRQCGALKVLFPEIDALYGIPQRPEYHPEIDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L+ + S+ + + + I + +L
Sbjct: 231 HTMMSLQQAC----RQNYSLDVRFAVLVHDLGKALTPVEELPRHIMHEERGIKPVNELCD 286
Query: 319 LYGDKVMIAKLKIF---LALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+L + L + + + ++L + ++P
Sbjct: 287 RLKVPTYTKQLALAVCKEHLKCHQAFNLKPGTLWRLLQRLDVLRRPE 333
>gi|319945217|ref|ZP_08019479.1| multifunctional CCA protein [Lautropia mirabilis ATCC 51599]
gi|319741787|gb|EFV94212.1| multifunctional CCA protein [Lautropia mirabilis ATCC 51599]
Length = 469
Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 63/352 (17%), Positives = 122/352 (34%), Gaps = 30/352 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ VGG+VRD L+ L D D PD+++ + K P + +
Sbjct: 12 QTYRVGGSVRDELLGLPAGDRDWVVVGATPDQMLAQGFQAVGKDFPVF--------LHPQ 63
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ T Y + D LRRD TINA+ G ++D G
Sbjct: 64 SHEEYALARTERKTAPGYKGFAVHFSPDVTLEDDLLRRDLTINAIARAADGSLVDPFHGQ 123
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK--KGLKIL 200
D++ R + + ED +RILR RF A + + I + L + + L
Sbjct: 124 ADIQARIFRHV---SPAFREDPVRILRLARFAARFPDFTIAPETLALMREMTAAGEVHAL 180
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ER+W E+++ L ++ P + + + + + E D + A
Sbjct: 181 VAERVWQELSRGLMSQRPSRMLQVLDQAHALRILLPQLPEP--DTQPDWLTALDASAAAH 238
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
D L ++ S + + + K +
Sbjct: 239 DPLPVRFAILLAGMTIPAESRIELGPQENIPQPASPTVSGNVDKTKAAKSVTEQAKALRA 298
Query: 321 GDKVMIAKLKIFLALH----------YNNLTHQDTCFILQVLSDIIHWKKPL 362
++ A ++ +H + + QD +L + + W++P
Sbjct: 299 SNECTDAAARLASEIHGPIPQAARQWFLSSERQDAEALLALFNRHDAWRRPE 350
>gi|254526284|ref|ZP_05138336.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT
9202]
gi|221537708|gb|EEE40161.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT
9202]
Length = 401
Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 71/389 (18%), Positives = 124/389 (31%), Gaps = 30/389 (7%)
Query: 30 CIVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKIICRK 86
+VGG +RD ++ + DIDI + + + S T K I ++II +
Sbjct: 33 YLVGGFIRDIILGRVTEEVDIDIVVPLNAIEIAKKISDTIGSKFIILDKKREVVRIILNQ 92
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146
DI + + D RDF+IN++ + +
Sbjct: 93 ISIDIA--------------NQVSSTIEGDLRARDFSINSIAFLFDKRCLFDPLNGLKDL 138
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
++ +L D LRILR FRF + K K I +
Sbjct: 139 ELSLLRTHS-EINLLNDPLRILRCFRFVSELNFKIDLKLVDFIKKTKGKLYLIAKERINY 197
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
I+K++ +N A++ + IF LD E + L F
Sbjct: 198 E-IHKIVNGRNAQEAVILIKKFNIFGSDDFYKNSFFLDLQEINYTELTKNEKEKLLPLFF 256
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
I I ++F R + +F K I ++ + K +
Sbjct: 257 ISQILD------ELSLERFKFSRSEIAKIKLLRKWHFLLKKKKITQLTESERFALHKELE 310
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385
L F+ NL ++ + + P L GD + K I G +G +L
Sbjct: 311 MFLPSFIFYLPPNLR---LDWLHRWRNKDDKLFHPSNLLNGDVIKKNLKIKDGPILGELL 367
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ +E E + + ++ I
Sbjct: 368 KYLSKELAYKRLNNFDEAI-YKAKRWIEQ 395
>gi|66047861|ref|YP_237702.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas syringae pv. syringae B728a]
gi|75500344|sp|Q4ZMF8|CCA_PSEU2 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|63258568|gb|AAY39664.1| Polynucleotide adenylyltransferase:Metal-dependent
phosphohydrolase, HD subdomain [Pseudomonas syringae pv.
syringae B728a]
Length = 408
Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 75/403 (18%), Positives = 136/403 (33%), Gaps = 55/403 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLIK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL+ R ++ + ED LR+LR RF A Y + + A LK
Sbjct: 115 DLQARILRHV---SPAFAEDPLRVLRVARFAARYAGYGFTIAPETLGLMRQLSASGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-------- 251
L++ER W EI++ L + P I +++ G KE+ +V+ +
Sbjct: 172 LTAERSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 252 ----AEQVFEWKIDSLLRFIVLISWQDK---KSILSMAKKFSLPREIRYFLISFFNCNFN 304
EQ K +R+ L+ K +R
Sbjct: 232 VLSVLEQSARHKHPLTVRWACLLHDLGKGLTPEAEWPRHIAHEHTGLRLIKAVNERFRVP 291
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL------------ 352
+ + + ++ +G + + K L L + ++ + +
Sbjct: 292 RDCQELALLVGQYHTHGHRALELKPSTLLELLQSFDVYRRPQRFEEFIAACEMDARGRHG 351
Query: 353 ---------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386
+ + ++ +++ G+ GK++G+ L
Sbjct: 352 FEQRSYPQADYLRGAAEAARAVSVQPLLEQGLK-GKELGDALK 393
>gi|260549768|ref|ZP_05823985.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter sp.
RUH2624]
gi|260407285|gb|EEX00761.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter sp.
RUH2624]
Length = 412
Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 58/344 (16%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ Q+ D + P+ ++ P + + +
Sbjct: 2 QVYLVGGAVRDFLLGHPYQEKDYVVVGATPEHMLA------QGFQPVGKDF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ DQ GK+ D GG
Sbjct: 54 TKEEYALARTERKSGQGYHGFQFFTDTTVSLEDDLIRRDLTINAIAMDQDGKIYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
+DL N+ ++ + ED LR+LR RF A Y +
Sbjct: 114 SDLENKILRHV---SEAFAEDPLRVLRVARFAARYFPYGFQIAPETLQLMQTMAESGELD 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E ++ L + + + G K +F ++ + E
Sbjct: 171 ALTPERVWKETSRALMETHADIYFQTLRDCGALKHLFPEIDALFGVPQRPEYHPEVDCGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L+ S ++ + + + + ++ +
Sbjct: 231 HTLMSLQ-QACKSNYSLDVRFAVLVHDLGKALTPADELPRHIMHEERGIKPVTQLCERLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + + ++L + ++P
Sbjct: 290 VPTQTKQLALSVCKEHLKCHQIMSLKPGTLWRLLQRLDVLRRPE 333
>gi|325122895|gb|ADY82418.1| tRNA nucleotidyl transferase [Acinetobacter calcoaceticus PHEA-2]
Length = 412
Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 60/344 (17%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ Q+ D + P+ ++ P + + +
Sbjct: 2 QVYLVGGAVRDFLLGHPYQEKDYVVVGATPEHMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ DQ GK+ D GG
Sbjct: 54 TKEEYALARTERKSGKGYHGFQFFTDTTVSLEEDLIRRDLTINAIAMDQDGKLYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL N+T++ + ED LR+LR RF A Y +
Sbjct: 114 TDLENKTLRHV---SEAFAEDPLRVLRVARFAARYSSYGFQIAPETMQLMQTMAESGELD 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E ++ L + + + G K +F ++ + E
Sbjct: 171 ALTPERVWKETSRALLEDHADVYFQTLRDCGALKYLFPEIDALFGVPQRPEYHPEVDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L+ S ++ + + + + E+ +
Sbjct: 231 HTLMSLQ-QACKSNYSLDVRFAVLVHDLGKALTPANELPRHIMHEERGVKPVTELCERLK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + + ++L + ++P
Sbjct: 290 VPTQTRQLALSVCKEHLKCHQIMSLKPGTVWRLLQRLDVLRRPE 333
>gi|302185950|ref|ZP_07262623.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas syringae pv. syringae 642]
Length = 409
Score = 93.4 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 75/431 (17%), Positives = 137/431 (31%), Gaps = 70/431 (16%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLIK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWK----ADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARILRHV---SPAFAEDPLRVLRVARFAARYAGYGFTIAPETLGLMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-------- 251
L++ER W EI++ L + P I +++ G E+ +V+ +
Sbjct: 172 LTAERSWKEISRALMEEQPQVFIQVLHDCGALNELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 252 ----AEQVFEWKIDSLLRFIVLISWQDK---KSILSMAKKFSLPREIRYFLISFFNCNFN 304
EQ K +R+ L+ K +R
Sbjct: 232 VLSVLEQSARHKHPLTVRWACLLHDLGKGLTPEAEWPRHIAHEHTGLRLIKAVNERFRVP 291
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL------------ 352
+ + + ++ +G + + K L L + ++ + +
Sbjct: 292 RDCQELALLVGQYHTHGHRALELKPSTLLELLQSFDVYRRPQRFEEFIAACEMDARGRHG 351
Query: 353 ---------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED 403
+ + ++ +++ G+ GK++G+ L +
Sbjct: 352 FEQRSYPQADYLRGAAEAARAVSVQPLLEQGLK-GKELGDALKS---------------E 395
Query: 404 LHHLLRKLIAS 414
L+ A
Sbjct: 396 RLKALKTYKAE 406
>gi|167561186|ref|ZP_02354102.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia oklahomensis EO147]
Length = 413
Score = 93.4 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 66/349 (18%), Positives = 118/349 (33%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ L V+D D + P+++ +K P + +
Sbjct: 3 VYAVGGAIRDELLGLPVRDRDYVVVGATPEQMAA----QGFK--PVGKDF--PVFLHPDT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ + R++ T Y F + D RRD T+NA+ + V+D
Sbjct: 55 HEEYALARTERKTAAGYHGFQFYYAPDVTLEQDLARRDLTVNAMAREVSPDGALVGPVVD 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
G DLR + + +GDA ED +RILR RF A + + + + V K
Sbjct: 115 PFDGQADLRAKVFRHVGDA---FAEDPVRILRVARFAARFADFAVAPETAVLMRKMVDAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L ER+W E+ + L P + G I ++ + E
Sbjct: 172 EVDALVPERVWQEVARGLMEGRPSRMFAVLRECGALVRILPEIDALFGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ S+ + + + S+ +K
Sbjct: 232 TGVHVMMVIDHAAKQG----YSLPVRFAALTHDLGKATTPADVLPRHIGHEGRSVELLKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL D ++++ +KP
Sbjct: 288 LCERLRVPNECRDLALVVAREHGNLHRVMEMDAAALVRLFERADALRKP 336
>gi|262278360|ref|ZP_06056145.1| tRNA nucleotidyl transferase [Acinetobacter calcoaceticus RUH2202]
gi|262258711|gb|EEY77444.1| tRNA nucleotidyl transferase [Acinetobacter calcoaceticus RUH2202]
Length = 412
Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 115/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRDSL+ Q+ D + P+ ++ P + + K
Sbjct: 2 QVYLVGGAVRDSLLGHPYQEKDYVVVGATPEHMLA------QGFQPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ DQ G++ D GG
Sbjct: 54 TKEEYALARTERKSGKGYHGFQFFTDTTVSLEEDLIRRDLTINAIAMDQDGRIYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL N+T++ + ED LR+LR RF A Y +
Sbjct: 114 TDLENKTLRHV---SEAFAEDPLRVLRVARFAARYSSYGFHIASETLQLMQTMAESGELD 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E ++ L + + + G K +F ++ + E
Sbjct: 171 ALTPERVWKETSRALLEDHADIYFQTLRDCGALKHLFPEIDALFGVPQRPEYHPEVDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L+ S ++ + + + + E+ +
Sbjct: 231 HTLMSLQ-QACKSNYSLDVRFAVLVHDLGKALTPVNELPRHIMHEERGVKPVTELCERLK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + + ++L + ++P
Sbjct: 290 VPTQTRQLALSVCKEHLKCHQIMSLKPGTVWRLLQRLDVLRRPE 333
>gi|254432179|ref|ZP_05045882.1| tRNA nucleotidyltransferase/poly(A) polymerase [Cyanobium sp. PCC
7001]
gi|197626632|gb|EDY39191.1| tRNA nucleotidyltransferase/poly(A) polymerase [Cyanobium sp. PCC
7001]
Length = 416
Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 57/382 (14%), Positives = 115/382 (30%), Gaps = 35/382 (9%)
Query: 28 KSCIVGGAVRDSLMNLS-------VQDIDIATTILPDRVMRIFSKT----RYKVIPTSIS 76
+ +VGGAVRD L++ V D+D+ ++R + +
Sbjct: 27 RVALVGGAVRDLLLHRVHNDPWRGVPDLDLVAEGPAIDLVRRLEALLPPGALRAAQEHGA 86
Query: 77 YGTIKI--ICRKKYF--DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131
YGT+++ + D+ T R + V D RRDF+INA+ D
Sbjct: 87 YGTVEVELRLEGQTVLLDVATARCETYPQPGENPKVVPGLLADDLARRDFSINAIALDLA 146
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE---KNIDSDGLV 188
G+++D GG DL+ R ++ + + +D R++R R+ A G
Sbjct: 147 SGELLDPHGGQADLQRRQLRLLHPH--SLHDDPSRLVRGARYAARLGFRLEPGSREQARR 204
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQLS 247
++ + + +L
Sbjct: 205 TLEAWPWAWHSGERPGQAPAALGTRLRMEFELLLLREPWPAALAILQDWGGLALLDARLQ 264
Query: 248 QVIEAEQVFEWKIDSLLRFIVLI--SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
+ W + L +V + D ++ + + +
Sbjct: 265 ADRHWRRRLHWAGRAGLPLMVALVAGAADPLALAERLQLPHRQHRLLAQWLELRQRLAEL 324
Query: 306 KTLSIPEIKKLFYLYGDKVMIAK-----LKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ + + + + LAL + +L + W+
Sbjct: 325 QQPAAEANGGPPTVAAWCAALEAPGGSPEAVLLALVTGTAPRRP------LLRWWLRWRH 378
Query: 361 PLFPLTGDDVVKYGIPPGKKVG 382
P T +++ G+ PG +G
Sbjct: 379 LKAPDTAAELIARGVKPGPALG 400
>gi|309780276|ref|ZP_07675027.1| multifunctional CCA protein [Ralstonia sp. 5_7_47FAA]
gi|308920979|gb|EFP66625.1| multifunctional CCA protein [Ralstonia sp. 5_7_47FAA]
Length = 428
Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 63/354 (17%), Positives = 121/354 (34%), Gaps = 31/354 (8%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
VGGA+RD+L+ L VQD D + P+ + + K P +
Sbjct: 17 HGLDVYAVGGAIRDALLGLPVQDRDYVVVGATPEAMEARGFRAVGKDFPVF--------L 68
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK----- 134
+ + R++ T Y + D +RRD TINA+
Sbjct: 69 HPATHAEYALARTERKTAAGYKGFSVYYAPDVTLEDDLIRRDLTINAMAQRVAEDGALVG 128
Query: 135 -VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
VID GG DL +R + + +ED +RILR RF A + + ++ + +
Sbjct: 129 PVIDPYGGQADLASRAFRHV---SDAFMEDPVRILRLARFAARFADFHVAPETNALMQRM 185
Query: 194 KK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + L ER+W EI + L +P + + G + ++ +
Sbjct: 186 VQAGEVDALVPERVWQEIARGLMEAHPQRMFAVLRDCGALVRLLPELDRLWGVPQRADYH 245
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E ++ ++ ++ + + S+P
Sbjct: 246 PEVDTGVHTMMVIETAAAMATSLPVRFAALVHDLGKG----TTPDDILPRHIGHEGRSVP 301
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKPL 362
I+ + +L + +A + N+ D ++++L +KP
Sbjct: 302 LIEAVCQRLRVPTECRELALVVAREHGNIHRCDGFDAAALVRLLERCDALRKPD 355
>gi|293609675|ref|ZP_06691977.1| phosphatase [Acinetobacter sp. SH024]
gi|292828127|gb|EFF86490.1| phosphatase [Acinetobacter sp. SH024]
Length = 412
Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ Q+ D + P+ ++ P + + +
Sbjct: 2 QVYLVGGAVRDFLLGHPYQEKDYVVVGATPEHMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ DQ GK+ D GG
Sbjct: 54 TKEEYALARTERKSGKGYHGFQFFTDTTVSLEEDLIRRDLTINAIAMDQDGKLYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL N+T++ + ED LR+LR RF A Y +
Sbjct: 114 TDLENKTLRHV---SEAFAEDPLRVLRVARFAARYSSYGFQIAPETMQLMQTMAESGELD 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ERIW E ++ L + + + G K +F ++ + E
Sbjct: 171 ALTPERIWKETSRALLEDHADVYFQTLRDCGALKHLFPEIDALFGVPQRPEYHPEVDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L+ S ++ + + + + E+ +
Sbjct: 231 HTLMSLQ-QACKSNYSLDVRFAVLVHDLGKALTPANELPRHIMHEERGVKPVTELCERLK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + + ++L + ++P
Sbjct: 290 VPTQTRQLALSVCKEHLKCHQIMSLKPGTVWRLLQRLDVLRRPE 333
>gi|146329773|ref|YP_001209948.1| tRNA nucleotidyltransferase [Dichelobacter nodosus VCS1703A]
gi|146233243|gb|ABQ14221.1| tRNA nucleotidyltransferase [Dichelobacter nodosus VCS1703A]
Length = 357
Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 66/372 (17%), Positives = 126/372 (33%), Gaps = 29/372 (7%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
+VGGAVRD L+ L D D M ++ + + +
Sbjct: 4 YLVGGAVRDRLLGLDGSDRDWVVIG---ETMDSMRARGFRQ--VGRDF--PVFLHPETGE 56
Query: 90 DITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ R + + F + D +RRD TINA+ D+ G++ID GG D+
Sbjct: 57 EYALARIERKIARGHQGFCFDFHQNITLEEDLIRRDLTINAMAEDENGQLIDPYGGSADI 116
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKILS 201
+ + ++ + ED LR+LR RF+A + + L+ L+
Sbjct: 117 QAKILRHV---SPAFSEDPLRVLRLMRFWARFAHLGFTIAPETLQLCGEMARSGELQTLT 173
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E K L+A NP ++ + +F Q + + +
Sbjct: 174 AERVWQECEKALKAPNPECFLMGLAQIHALNVLFGATQPSARQLAAMNQRLMNTPTLEAH 233
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L + ++ + + N + +S + + G
Sbjct: 234 QRLARCLWHEKDLIAALKKQMPLPQKYHYWLDLVARYGELLQNWQHISGEQRWAILKACG 293
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381
+ A +F + + + I ++ + + +DV K G G +
Sbjct: 294 --GLRAAGDVFALAQTCGVDEA-------LQTQITAAQEKVNSVQANDVQKAGF-SGAAL 343
Query: 382 GNILVHCKQEWI 393
G L +Q +
Sbjct: 344 GAELKR-RQIVL 354
>gi|86605729|ref|YP_474492.1| polyA polymerase family protein [Synechococcus sp. JA-3-3Ab]
gi|86554271|gb|ABC99229.1| polyA polymerase family protein [Synechococcus sp. JA-3-3Ab]
Length = 445
Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 62/418 (14%), Positives = 127/418 (30%), Gaps = 45/418 (10%)
Query: 30 CIVGGAVRDSLM---------NLSVQDIDIATTILPDRVMR-IFSKTRYKVIPTSISYGT 79
VGG++RD+ + + D+D+ P + + + +
Sbjct: 30 YWVGGSLRDAYLAWLRGQAGDSKGPVDLDLMCPADPVGWAAGVARRLKAGFVVLDAERQI 89
Query: 80 IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDY 138
+I+ + T + A + +AD +RDFT NAL + Q+G ++D
Sbjct: 90 ARIVLGQGGASTPTAATVD------AALQVGPTPEADLRQRDFTCNALALELQEGHLLDP 143
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198
GG D+ R ++ + + D +R+LR +R A G + +A +
Sbjct: 144 TGGRADIEQRCLRMVHPDNLS--ADPVRLLRAYRQAAQLGFALDPATAEAIRQRAPLLAR 201
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQVIEAEQVF 256
+ + + L L + G+ + Q Q V + +++
Sbjct: 202 VAAERVRAEVVTLLETGIPGLAHLQAAVAAGLLAAWLPRLAPQSPGFAQAQAVWQWAEIW 261
Query: 257 EWKIDSLLRFIVLISWQ----------------------DKKSILSMAKKFSLPREIRYF 294
+ + L + + +FS
Sbjct: 262 QLQYPRTLAELAQPLADRRGGLLATVLAALLWDPAGTPAETVEAELERLRFSRAEMRAIQ 321
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ P + + LY + LA + + ++ +
Sbjct: 322 KLHQLLPLLQTLLTHSPTPGQQWRLYHQAGSLFGGLALLAAATGSSPREIESWLRRYEDP 381
Query: 355 IIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+ L G+D++ G PG VG +L ++ Q E L R+
Sbjct: 382 QDPLAHLVPLLDGNDLLHSLGAKPGPWVGQLLQALQEAQAAGQIQTRAEAL-SFARRW 438
>gi|114564148|ref|YP_751662.1| metal dependent phosphohydrolase [Shewanella frigidimarina NCIMB
400]
gi|122298996|sp|Q07YU1|CCA_SHEFN RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|114335441|gb|ABI72823.1| metal dependent phosphohydrolase [Shewanella frigidimarina NCIMB
400]
Length = 414
Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 62/344 (18%), Positives = 117/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD+L+ +V D D + ++ + + K P + K
Sbjct: 2 KIYLVGGAVRDTLLKQTVVDKDYVVVGSSVEEMLALGYQQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G D LRRD TINA+ D+ G + D G+
Sbjct: 54 TQQEYALARTERKTGYGYQGFSCDANKDVTLSEDLLRRDLTINAIAQDEHGTLTDPFHGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK---- 198
D+ + ++ + ED LR+LR RF A + +
Sbjct: 114 ADINAKILRHV---SDAFTEDPLRVLRVARFAARFHHLGFTIAPETLQLMTDIANSGELD 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E +K L +++P + +F +V + + E
Sbjct: 171 HLTPERVWQECDKALSSQSPQVFFDVLKQCQALIVLFPEVDALFGVPQPEKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+L L+S ++ + + + + I ++
Sbjct: 231 HTLMVLEQTSLLSDNKAVRFAALVHDLGKALTPKQDWPKHY-GHGQKGLPVIKKLCARIR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L + +N I+++ W+KP
Sbjct: 290 VPNEYRDLALLVSDQHQNIHNAFELRAETIVKLFDKGDFWRKPQ 333
>gi|289166530|ref|YP_003456668.1| multifunctional tRNA nucleotidy [Legionella longbeachae NSW150]
gi|288859703|emb|CBJ13673.1| multifunctional tRNA nucleotidy [Legionella longbeachae NSW150]
Length = 382
Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 63/303 (20%), Positives = 122/303 (40%), Gaps = 26/303 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGT---IKII 83
K +VGGAVRD L+ + +D D D ++++ YK +P ++GT +
Sbjct: 2 KIYLVGGAVRDKLLGFAPKDNDWLVVGGTRDEMLKL----GYKPVPN--NHGTSEFPVFL 55
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKV---- 135
+ + R + T + F + D RRD TINA+ + +
Sbjct: 56 HPETKEEYALARLEERTGYGHGGFEFDTSSSITIVDDLKRRDLTINAMAFPVEDEKMGEL 115
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
ID G DL NR ++ I ++D LR++R RF A G + + + +
Sbjct: 116 IDPYNGKVDLENRILRHI---SPAFIDDPLRLIRTARFAACLGFEVAAETMELMTQMVIE 172
Query: 196 GL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
G L +ERIW E+ + ++ +P + + +F ++ + ++
Sbjct: 173 GKVSDLRNERIWMEMERAIKGPHPEKFFDVLKKCSADRILFPYIKTPG----PGINAMQR 228
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ K + +RF L+ ++ + K+F+L + R + + LS +
Sbjct: 229 AADHKNSAPVRFAALMLDLTQEEVTKFCKQFNLSNQYRDLALLAIKNLPQFQRLSELDAP 288
Query: 315 KLF 317
++
Sbjct: 289 EIL 291
>gi|188996967|ref|YP_001931218.1| Polynucleotide adenylyltransferase region [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932034|gb|ACD66664.1| Polynucleotide adenylyltransferase region [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 474
Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 72/434 (16%), Positives = 147/434 (33%), Gaps = 43/434 (9%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSK-TRYKVIPT 73
+ L KG +VGG VRD ++N + DID T P +V+ K + +
Sbjct: 43 VAKALPKGSF-CFLVGGWVRDRIINRPIGENIDIDFIITADPLQVVNNLKKFIKGDIFQF 101
Query: 74 SISYGTIKIICR----KKYFDITTLR-----SDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ + FD + L S+ D + + D L RDFTI
Sbjct: 102 EKEKKVATFLFKENNYNYRFDFSYLDISDILSNPDIDFYQKEELILERLIKDLLERDFTI 161
Query: 125 NALYADQQGK---------VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
NA+ + +ID G DL++ I+ I + I++D +RILR +R
Sbjct: 162 NAIAVNFDDTSSLSASTTVLIDPSNGFKDLQDGIIRPISIEN--IIKDPVRILRGYRLAL 219
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
K + + + + N + K I
Sbjct: 220 ELDFTIDKEFEKFVKNNPNLIEKSPKERIRDELLKIISNENSKDTLNKLLENKILKKVIS 279
Query: 236 LDVQEISL-----DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS---- 286
+++++ L + + + ++ V + K L + I++ +IL K +
Sbjct: 280 KNLKDLKLYESLEENIKKKLKFVDVQKLKEIKLYQNFSSITFLKLAAILYTLKDYKEILE 339
Query: 287 -------LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ +I + + + + ++ Y K + N
Sbjct: 340 EKLLLPVKISKFIEDIIQATEYLLSISKNNPSDFELNWFWYKFKNASDYCFLLSYSINKN 399
Query: 340 LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQ 398
L I ++ + L+G++++K + P K+VG I + I+ +
Sbjct: 400 LEDFILRLINHYENNYKNNIVEEPLLSGEEIMKLLNLKPSKEVGIIKDSLIKAQISGKVK 459
Query: 399 LSQEDLHHLLRKLI 412
++ + +++
Sbjct: 460 -TKAEATKFVKEFK 472
>gi|209517336|ref|ZP_03266179.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia sp. H160]
gi|209502219|gb|EEA02232.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia sp. H160]
Length = 410
Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 66/349 (18%), Positives = 120/349 (34%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGAVRD L+ VQD D + P++++ Y+ P + + +
Sbjct: 3 IYAVGGAVRDELLGEPVQDRDYVVVGATPEQMVA----QGYR--PVGKDF--PVFLHPQT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ + R++ T Y F + D RRD TINA+ + + VID
Sbjct: 55 HEEYALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KK 195
G DLR R + + LED +RILR RF A + + + + + +
Sbjct: 115 PFNGQADLRARLFRHV---SDAFLEDPVRILRIARFAARFVDFTVAPETMTLMREMVADG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
L +ER+W E+++ L K P + G I ++ + E
Sbjct: 172 EADALVAERVWQEVSRGLMEKKPSRMFDVLRECGALARILPEIDALFGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ +L + ++ + + S+ +K
Sbjct: 232 TGIHVMMVLDHAAKQGYTLPVRFAALTHDL----GKATTPEDVLPRHIGHEGRSVDLLKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + N+ ++++L +KP
Sbjct: 288 LCERLRVPNECRDLAVLVAREHGNIHRVMEMGAAALVRLLERSDAIRKP 336
>gi|330970849|gb|EGH70915.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae
pv. aceris str. M302273PT]
Length = 408
Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 74/403 (18%), Positives = 134/403 (33%), Gaps = 55/403 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLIK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARILRHV---SPAFAEDPLRVLRVARFAARYAGYGFTIAPETLGLMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-------- 251
L++ER W EI++ L + P I +++ G KE+ +V+ +
Sbjct: 172 LTAERSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 252 ----AEQVFEWKIDSLLRFIVLISWQDK---KSILSMAKKFSLPREIRYFLISFFNCNFN 304
EQ K +R+ L+ K +R
Sbjct: 232 VLSVLEQSARHKHPLTVRWACLLHDLGKGLTPEAEWPRHIAHEHTGLRLIKAVNERFRVP 291
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL------------ 352
+ + + ++ +G + + K L L + ++ + +
Sbjct: 292 RDCQELALLVGQYHTHGHRALELKPSTLLELLQSFDVYRRPQRFEEFIAACEMDARGRHG 351
Query: 353 ---------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386
+ + ++ +++ G+ GK++G+ L
Sbjct: 352 FEQRSYPQADYLRGAAEAARAVSVQPLLEQGLK-GKELGDALK 393
>gi|116514983|ref|YP_802612.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|122285621|sp|Q058D0|CCA_BUCCC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|116256837|gb|ABJ90519.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. Cc (Cinara
cedri)]
Length = 414
Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 67/344 (19%), Positives = 125/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI--LPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
K +VGGA+RD L+N+ V+D D P +++ + K P I
Sbjct: 2 KIYLVGGAIRDRLLNIPVRDRDWVVVGIRDPKEMLKKNYQQVGKGFPVFI--------HP 53
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGG 141
K + + + R++ + +F K D RRD TINA+ D GK+ID+ G
Sbjct: 54 KTHEEYSLARTEKKNGVGHTGFLFDFSSRITLKEDLKRRDLTINAIAQDSSGKIIDFFNG 113
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL- 200
D++ + ++ + + ED LR+LR RF A S+ +
Sbjct: 114 KKDIQKKILRHV---SYSFQEDPLRVLRIARFAALLSHLGFYIAKKTLSLMKLICSRKEL 170
Query: 201 ---SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
+ ERIW E K L +NP +Y+ +F ++ + +
Sbjct: 171 LYLTPERIWKETQKGLSTQNPHVYFQVLYSCNALFFLFPEINYFYKKTYFLNSFIKHINL 230
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
+ + + +D S +F + + + + + ++
Sbjct: 231 VQYSLIELSKISKVTKDINIRFSYFLQFFYYVYPIPNIGTKDYFFYKKPAFLLKKMLIRL 290
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + I N+ Q + I++ + I W+KP
Sbjct: 291 KIPKETSEIIFFLCGFHNFLQNINIQSSKLIIKFFNIIDVWRKP 334
>gi|88811002|ref|ZP_01126258.1| tRNA nucleotidyl transferase [Nitrococcus mobilis Nb-231]
gi|88791541|gb|EAR22652.1| tRNA nucleotidyl transferase [Nitrococcus mobilis Nb-231]
Length = 410
Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 116/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L+V + D P ++ P + I +
Sbjct: 2 ETYLVGGAVRDRLLGLTVTERDWVVVGAEPAELIAR------GFRPVGREF--PVFIHPE 53
Query: 87 KYFDITTLRSDLIT-DGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + +T + D RRD TINAL D+ G+VID GG
Sbjct: 54 TGEEYALARTERKVGRGYHGFTFYTSPAVTLEQDLQRRDLTINALAQDKHGRVIDPFGGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED +RILR RF A + A +
Sbjct: 114 RDLEARILRHV---SPAFREDPVRILRLARFAARLEHLGFTIAQETLELCREMVAAGEVD 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER+W EI + L P + + + + ++ + E
Sbjct: 171 ALVPERVWQEIARALMEPTPSAFVRVLRESTALQRLLPELDRLFGVPQRADFHPEVDTGV 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ L V +S + + + + + L + +
Sbjct: 231 HVLLALDLSVQLSDRLAVRFAVLMHDLGKG-TTPATELPRHRGHEERGVLLVEAVCARLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AK L + ++ +L + +++P
Sbjct: 290 VPRACRDLAKRVARYHLKCHRALELRPATVVALLEALDAFRRPE 333
>gi|322709898|gb|EFZ01473.1| putative tRNA nucleotidyltransferase [Metarhizium anisopliae ARSEF
23]
Length = 514
Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 64/450 (14%), Positives = 131/450 (29%), Gaps = 71/450 (15%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSK----------TRYKVIPTSISY 77
GG VRD L+ + DID+A + + K +
Sbjct: 54 VRWAGGWVRDKLLGIESHDIDVAINAMTGIHFAQRMREYCNTEKGSRIHAIKPDDIGNLH 113
Query: 78 ------------GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
T + D+ LR + + V + D+LRRD TIN
Sbjct: 114 NVSKNPDKSKHLETAMVRIFGLDLDLVNLRKETYAEDSRNPTVEFGTAEEDALRRDATIN 173
Query: 126 ALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
A + + + I+ G DL + ++ +D LR+LR RF + G +
Sbjct: 174 AFFYNIHTEQIEDFTGGMRDLTAKVLRTPLSPLETFKDDPLRVLRLVRFASRLGFSIEEE 233
Query: 185 DGLVASI-----------------------------KAKKGLKILSSERIWSEINKLLEA 215
V + K+ + ++ L+
Sbjct: 234 TKKVMAHPEVLDALQVKISRERVGTELEKMLKDSSSKSTARPDSSRWHVAYECLDSLVRK 293
Query: 216 KNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE-------------QVFEWKIDS 262
++P + + G + +S + ++ +K +
Sbjct: 294 RSPGSLGELLIRPGEANYAAWILASLSPWMVVELPPNNVRKANVLPPPAVAAREGFKAPN 353
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
L IV S+++++ I+ M + + P ++
Sbjct: 354 KLVDIVTGSYRNRREIIRMKTSTCNEEGAVLARDTLGMAIRRWDSHGGPWTLQVLSALLV 413
Query: 323 KVMIAKLKIFLALHYNNLTHQD-TCFILQVLSDIIHWKKP--LFPLTGDDV-VKYGIPPG 378
+ M ++ D L ++ ++ + P L G + + G+ PG
Sbjct: 414 EAMESQDAWTELDDKGKDDFMDGWQKFLDLIIELDLYDAPGMKRLLDGRSLALALGVKPG 473
Query: 379 KKVGNILVHCKQEWINSSFQLSQE-DLHHL 407
K G L C + + + + + +
Sbjct: 474 KWTGQALDLCLAWQLRNPHETDPKGAIEEI 503
>gi|323491183|ref|ZP_08096369.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Vibrio
brasiliensis LMG 20546]
gi|323314551|gb|EGA67629.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Vibrio
brasiliensis LMG 20546]
Length = 403
Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 65/342 (19%), Positives = 115/342 (33%), Gaps = 21/342 (6%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+ + V D D P++++ K P + +
Sbjct: 4 YLVGGAVRDQLLKIDVYDRDWVVVGSTPEQLLEKGYTAVGKDFPVF--------LHPESK 55
Query: 89 FDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ G + D +RRD TINA+ D G +ID G D
Sbjct: 56 EEHALARTERKIGAGYTGFECYFAADVTLEEDLMRRDLTINAMAQDPNGNIIDPFNGQAD 115
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKIL 200
L +R ++ + ED LR+LR RF A + I L L
Sbjct: 116 LNDRVLRHV---SDAFTEDPLRVLRVARFAAKLDHLGFTIAEETLDLMRQIAHSGELSNL 172
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ ER+W E +K L +NP + + K + ++ + + E
Sbjct: 173 TPERVWQEWHKSLSTENPQVFLSVLRECDALKILLPELDALFGVPQPEKWHPEIDTGIHT 232
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+ + L+S S + + I ++ + +
Sbjct: 233 LLVAKQAALLSKSLPVRFASQVHDLGKG-ITPESEWPSHKMHCHTGLKLIKKLCQRVRVP 291
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A + + + L+VL+ W+KP
Sbjct: 292 NEFRDLALMVCEQHSNIHRAAELRPETKLKVLNKFDVWRKPE 333
>gi|186477645|ref|YP_001859115.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia phymatum STM815]
gi|226702044|sp|B2JIM3|CCA_BURP8 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|184194104|gb|ACC72069.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia phymatum STM815]
Length = 417
Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 62/349 (17%), Positives = 120/349 (34%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P++++ ++ P + +
Sbjct: 3 IYAVGGAIRDELLGMPVQDRDYVVVGATPEQMIA----QGFR--PVGKDF--PVFLHPDT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ R++ T Y F + D RRD TINA+ + VID
Sbjct: 55 QEEYALARTERKTSAGYHGFQFFYAPDVTLEDDLARRDLTINAMAREVTPDGALIGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
G DL +R + + LED +RILR RF A + + ++ + L K +
Sbjct: 115 PFNGREDLEHRVFRHV---SDAFLEDPVRILRVARFSARFADFSVAPETLALMRKMVEAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L ER+W E+++ L K P + + G + ++ + E
Sbjct: 172 EVDALVPERVWQEVSRGLMEKKPSRMFEVLRDCGALARVLPEIDALYGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ ++ + + + S+ +K
Sbjct: 232 TGVHVMMVVDHAAA----QNYALAVRFAALTHDLGKATTPEDVLPRHIGHEGRSVDLLKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + N+ ++++ +KP
Sbjct: 288 LCERLRVPNECRDLALLVAREHGNIHRVMETKAAGLVRLFERSDALRKP 336
>gi|270158657|ref|ZP_06187314.1| multifunctional CCA protein [Legionella longbeachae D-4968]
gi|269990682|gb|EEZ96936.1| multifunctional CCA protein [Legionella longbeachae D-4968]
Length = 382
Score = 93.0 bits (229), Expect = 7e-17, Method: Composition-based stats.
Identities = 63/303 (20%), Positives = 122/303 (40%), Gaps = 26/303 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGT---IKII 83
K +VGGAVRD L+ + +D D D ++++ YK +P ++GT +
Sbjct: 2 KIYLVGGAVRDKLLGFAPKDNDWLVVGGTRDEMLKL----GYKPVPN--NHGTSEFPVFL 55
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKV---- 135
+ + R + T + F + D RRD TINA+ + +
Sbjct: 56 HPETKEEYALARLEERTGYGHGGFEFDTSSSITIVDDLKRRDLTINAMAFPVEDEKMGEL 115
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
ID G DL NR ++ I ++D LR++R RF A G + + + +
Sbjct: 116 IDPYNGKVDLENRILRHI---SPAFIDDPLRLIRTARFAACLGFEVAAETMELMTQMVIE 172
Query: 196 GL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
G L +ERIW E+ + ++ +P + + +F ++ + ++
Sbjct: 173 GKVSELRNERIWMEMERAIKGPHPEKFFDVLKKCSADRILFPYIKTPG----PGINAMQR 228
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ K + +RF L+ ++ + K+F+L + R + + LS +
Sbjct: 229 AADHKNSAPVRFAALMLDLTQEEVTKFCKQFNLSNQYRDLALLAIKNLPQFQRLSELDAP 288
Query: 315 KLF 317
++
Sbjct: 289 EIL 291
>gi|78183883|ref|YP_376317.1| poly A polymerase family protein [Synechococcus sp. CC9902]
gi|78168177|gb|ABB25274.1| poly A polymerase family [Synechococcus sp. CC9902]
Length = 398
Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 58/379 (15%), Positives = 120/379 (31%), Gaps = 33/379 (8%)
Query: 31 IVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKIICRKK 87
+VGGAVRD+L+ D+D+ R +K K + +++
Sbjct: 35 LVGGAVRDALLGRHNPHPDLDLVVRSDALRHSARLAKIFGGKHVVLDEQRDIARLVLNGW 94
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
D+ + D RRD++INA+ Q
Sbjct: 95 TIDVA--------------RQEGDGLEDDLWRRDYSINAIALPLQPMASLCDPTGGLGDL 140
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
+ + +++D LR+LR RF A +D+ + + L + ERI +
Sbjct: 141 KQGRLRAVREQNLIDDPLRLLRGLRFLAEIP-LVLDAQTGEWIQRHHQALGQSAPERILA 199
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267
E+ +L++ + A+ + + + Q ++ + + E + L + I
Sbjct: 200 ELQRLVKGPHADQALHLLEQWPLLQPWATTSQTVASYDTTLLNAEEATNALPLARLTKLI 259
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
K+ + ++ + K ++ ++ +
Sbjct: 260 S----------DDGLKRLKASKILQQRCARLRHWGLQAKQQPEALPEQE----RLQLHLE 305
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV-VKYGIPPGKKVGNILV 386
AL + ++ + P PL G + + G+ G +G +L
Sbjct: 306 LEGDLAALILDLPKELQPQWLKRWRDPSDPLFHPTMPLDGGSLQKELGLSAGPTMGKVLA 365
Query: 387 HCKQEWINSSFQLSQEDLH 405
+ E Q E L
Sbjct: 366 QLRLERAFGRIQTRDEALK 384
>gi|319776497|ref|YP_004138985.1| tRNA nucleotidyltransferase [Haemophilus influenzae F3047]
gi|317451088|emb|CBY87321.1| tRNA nucleotidyltransferase [Haemophilus influenzae F3047]
Length = 416
Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 70/348 (20%), Positives = 116/348 (33%), Gaps = 23/348 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD L+ L V+D D + + + K
Sbjct: 2 KIYLVGGAVRDQLLGLPVKDRDWIVVG-----ADHATLLSLGYQQVGKDF--PVFLNPKT 54
Query: 88 YFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ G T + D +RRD TINA+ + G+VID GG
Sbjct: 55 KEEYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEVIDPYGGKQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203
DL NR ++ I ED LR+LR RF A Y S+ A+ L
Sbjct: 115 DLENRILRHI---SPAFSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELALSGELEH 171
Query: 204 RIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
+ K L KNP ++ G +F ++ + E
Sbjct: 172 LTAERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEIDALHGVPNPVKHHPEVDSFIH 231
Query: 260 IDSLLRFIVLI----SWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEIK 314
+L+ V + +K ++ A L + + I + + +
Sbjct: 232 TMLVLKQAVNLTENNPILNKSAVRFAAICHDLGKALTPQNILPHHYGHEQAGIKPTRSLC 291
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
K + +A+L H + ++ + + W+KP
Sbjct: 292 KRLKVPSYFQELAELTCEFHTHIHKAFELRAETVITLFNRFDVWRKPQ 339
>gi|332289921|ref|YP_004420773.1| phosphodiesterase/2'nucleotidase/phosphatase [Gallibacterium anatis
UMN179]
gi|330432817|gb|AEC17876.1| phosphodiesterase/2'nucleotidase/phosphatase [Gallibacterium anatis
UMN179]
Length = 392
Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 72/344 (20%), Positives = 129/344 (37%), Gaps = 33/344 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L+ L+V+D D P+ K Y I + + +
Sbjct: 6 KTYLVGGAVRDRLLGLAVKDRDWLVVHATPE----WLLKQGY--IQVGKDF--PVFLHPQ 57
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G Y + D RRD TINA+ D G + D G+
Sbjct: 58 TKEEYALARTERKNGRGYTGFYCDFSPDITLEQDLKRRDLTINAIAQDIDGNLYDPYHGI 117
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL+ R ++ I ED LRILR RF A + N + S+ + L
Sbjct: 118 QDLKQRKLRHI---SPAFSEDPLRILRVARFAARFYAFNFTIAPETVALMKSMVKQGELA 174
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ERIW E K L + ++ G F + + + + + ++ +
Sbjct: 175 DLTVERIWLETEKALLSPRCDIYFSILHQIGATSL-FPEFKPLFQSRYKLLTQSLKRLN- 232
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ +D+ + +F L + + Q + ++ + +
Sbjct: 233 -----------LLLEDQNDDQAPLFRFVLLCALLVSSETLSATQRKQLIEKVQQLCQRYK 281
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +AKL + L ++ H ++ +L + W+KP
Sbjct: 282 IPNHYSELAKLAMQFILPFSQTEHLSANDVIDLLDQLDCWRKPQ 325
>gi|187930728|ref|YP_001901215.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Ralstonia
pickettii 12J]
gi|187727618|gb|ACD28783.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Ralstonia pickettii 12J]
Length = 428
Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 57/351 (16%), Positives = 115/351 (32%), Gaps = 25/351 (7%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
VGGA+RD+L+ L VQD D + P+ + + K P +
Sbjct: 17 HGLDVYAVGGAIRDALLGLPVQDRDYVVVGATPEDMEARGFRAVGKDFPVF--------L 68
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYAD--QQGKVID 137
+ R++ T Y + D +RRD TINA+ + G ++
Sbjct: 69 HPATQAEYALARTERKTAAGYKGFSVYYAPDVTLEDDLIRRDLTINAMAQRVAEDGALVG 128
Query: 138 YVGGLNDLRNRTIKFIGDA-HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK- 195
V + +ED +RILR RF A + + ++ + + +
Sbjct: 129 PVVDPYGGQADLASRTFRHVSDAFMEDPVRILRLARFAARFADFHVAPETNALMQRMVQA 188
Query: 196 -GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W EI + L +P + + G + ++ + E
Sbjct: 189 GEVDALVPERVWQEIARGLMEAHPQRMFAVLRDCGALVRLLPELDRLWGVPQRADYHPEV 248
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
++ ++ ++ + + S+P I+
Sbjct: 249 DTGVHTMMVIETAAAMATSLPVRFAALVHDLGKG----TTPDDILPRHIGHEGRSVPLIE 304
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKPL 362
+ +L + +A + N+ D ++++L +KP
Sbjct: 305 AVCQRLRVPTECRELALVVAREHGNIHRCDGFDAAALVRLLERCDALRKPD 355
>gi|206901222|ref|YP_002251230.1| poly A polymerase, putative [Dictyoglomus thermophilum H-6-12]
gi|206740325|gb|ACI19383.1| poly A polymerase, putative [Dictyoglomus thermophilum H-6-12]
Length = 469
Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 77/472 (16%), Positives = 152/472 (32%), Gaps = 88/472 (18%)
Query: 14 DLINILSLLNKGE--DKS--CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RY 68
+L IL ++ + + IVGG +RD L+ QDID + SK +
Sbjct: 4 ELYKILYIIKEYSKIYEITPYIVGGFIRDYLLGKKPQDIDFLIDPFNIDFIDNLSKILKG 63
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+++ +I+ + K ++ ++ + +RRDFTIN++
Sbjct: 64 RLVILDEERKYFRIVVKNKENTFVL----------DFTPIYQQNLLLEIVRRDFTINSIV 113
Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ + ++ D + GL DL +K + ED LRILR FRF A ID
Sbjct: 114 LNLRNFEIYDPLKGLKDLERNVLKLSSP--DSLKEDPLRILRVFRFGA--SGFKIDKSVF 169
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ K + L + ERI E+ K+L+ M + +EIF ++ E+ S
Sbjct: 170 ESIRKNSQRLSKIKPERIHEELYKILKNPFTSYIWKEMEEYNVLREIFPELSEMKNIPWS 229
Query: 248 QVIEAEQVFEWKIDSLL--------------------------RFIVLISWQDKKSILSM 281
+ E E I +L + + ++ + S+
Sbjct: 230 E-PHHENPLEHSITTLYVLEELFYNIDKIFPSIKKELEKYFSEKLFSEFTKKETLKLASL 288
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIP----------------------EIKKLFYL 319
+ + + + K S
Sbjct: 289 LHDIGKSKTYSIDENNLVHYYGHSKVGSEMLEEIAERLKLSNKELSFIQKIIRNHMYLID 348
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL-----------------SDIIHWKKPL 362
+ I + ++ ++ FI + P
Sbjct: 349 FIKNQEINPIHKLISRVNEDVPSLIFLFISDQIAIKRTFENKEYFEKLLQDFFKLKSIPK 408
Query: 363 FPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
L+G ++++ + P VG + + I + +E + L++++
Sbjct: 409 PLLSGHEIMQLFNLQPSPLVGILKEKLIEAQIEEKIKTKEEAI-RFLKEILE 459
>gi|299769308|ref|YP_003731334.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter sp. DR1]
gi|298699396|gb|ADI89961.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter sp. DR1]
Length = 412
Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 60/344 (17%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRDSL+ Q+ D + P+ ++ P + + +
Sbjct: 2 QVYLVGGAVRDSLLGHPYQEKDYVVVGATPEHMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ DQ GK+ D GG
Sbjct: 54 TKEEYALARTERKSGKGYHGFQFFTDTTVSLEEDLIRRDLTINAIAMDQDGKLYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL N+T++ + ED LR+LR RF A Y +
Sbjct: 114 TDLENKTLRHV---SDAFAEDPLRVLRVARFAARYSAYGFHIAPETLQLMQTMAESGELD 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E ++ L + + + K +F ++ + E
Sbjct: 171 ALTPERVWKETSRALLEDHADIYFQTLRDCSALKHLFPEIDALFGVPQRPEYHPEVDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L+ S ++ + + + + E+ +
Sbjct: 231 HTLMSLQ-QACKSNYSLDVRFAVLVHDLGKALTPVNELPRHIMHEERGVKPVTELCERLK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + + ++L + ++P
Sbjct: 290 VPTQTRQLALSVCKEHLKCHQIMSLKPGTVWRLLQRLDVLRRPE 333
>gi|300692904|ref|YP_003753899.1| tRNA nucleotidyl transferase [Ralstonia solanacearum PSI07]
gi|299079964|emb|CBJ52641.1| tRNA nucleotidyl transferase [Ralstonia solanacearum PSI07]
Length = 429
Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 61/354 (17%), Positives = 116/354 (32%), Gaps = 31/354 (8%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
VGGA+RD+L+ L VQD D + P+ + ++ + +
Sbjct: 18 HGLDVYAVGGAIRDTLLGLPVQDRDYVVVGATPEAM----EAHGFRT--VGKDF--PVFL 69
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK----- 134
+ + R++ T Y + D +RRD TINA+
Sbjct: 70 HPRTQAEYALARTERKTAAGYKGFSVYYAPDVTLEDDLVRRDLTINAMAQRVAENGALVG 129
Query: 135 -VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
VID GG DL +RT + + ED +RILR RF A + + ++ +
Sbjct: 130 PVIDPYGGQADLASRTFRHV---SEAFAEDPVRILRVARFAARFADFHVAPGTHALMQRM 186
Query: 194 KK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + L ER+W E + L P + + G + ++ +
Sbjct: 187 VEAGEVDALVPERVWQEFARGLMEARPSRMFAVLRDCGALARLLPELDRLWGVPQRADYH 246
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E ++ + ++ + + S+P
Sbjct: 247 PEIDTGVHTMMVVDTAAAMGTPLPVRFAALVHDLGKG----TTPADVLPRHVGHEARSVP 302
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362
I+ + L + +A + N+ D ++++L +KP
Sbjct: 303 MIEDVCQRLRVPTDCRDLALVVAREHGNIHRSDGFDATALVRLLERCDALRKPE 356
>gi|312797514|ref|YP_004030436.1| tRNA nucleotidyltransferase [Burkholderia rhizoxinica HKI 454]
gi|312169289|emb|CBW76292.1| tRNA nucleotidyltransferase (EC 2.7.7.25) [Burkholderia rhizoxinica
HKI 454]
Length = 414
Score = 92.6 bits (228), Expect = 9e-17, Method: Composition-based stats.
Identities = 56/343 (16%), Positives = 114/343 (33%), Gaps = 19/343 (5%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ VQD D + P+++M ++ P + + +
Sbjct: 3 VYAVGGAIRDELLGKPVQDRDYVVVGATPEQMMA----QGFR--PVGKDF--PVFLHPRT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINAL--YADQQGKVIDYVGG 141
+ R++ T Y F + D RRD TINA+ G + V
Sbjct: 55 QEEYALARTERKTAAGYHGFQFFYAPDVTLEQDLARRDLTINAMARAVLPDGTLHGPVID 114
Query: 142 -LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLK 198
N + + ED +RILR RF A + + + L + + +
Sbjct: 115 PFNGQADLQARVFRHVSDAFAEDPVRILRVARFAARFTDFTVAPQTLALMRQMVEAGEVD 174
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L ER+W E+ + L P + G + + +V + E
Sbjct: 175 ALVPERVWQELARGLMEPEPSRMFEVLRQCGALERVLPEVARLFGVPQRADYHPEVDTGV 234
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ ++ + + ++ + ++ + + I + +
Sbjct: 235 HVMMVIDYAAARHYALPVRFAALTHDLGKA-DTPPHVLPRHIGHEARSVEHILALCERLR 293
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ D +A L + + + ++++L +KP
Sbjct: 294 VPNDCRDLAVLVAREHGNVHRVMEMGAAALVRMLERSDALRKP 336
>gi|209696097|ref|YP_002264027.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Aliivibrio
salmonicida LFI1238]
gi|226702032|sp|B6EM10|CCA_ALISL RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|208010050|emb|CAQ80373.1| tRNA nucleotidyltransferase (multifunctional CCA protein)
[Aliivibrio salmonicida LFI1238]
Length = 407
Score = 92.6 bits (228), Expect = 9e-17, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 122/344 (35%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRDSL+N+ V+D D P + + ++ + P + +
Sbjct: 2 QIYLVGGAVRDSLLNIDVKDKDWVVVGSTPTHMNSLGYQSVGQDFPVF--------LHPR 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y + D LRRD TINA+ +G +ID G
Sbjct: 54 TKEEYALARTERKSGQGYKGFTCYAEADVTLEEDLLRRDLTINAIAQSDKGLLIDPYHGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK----KGLK 198
DL+NR ++ + + +ED LR+LR RF A + + L
Sbjct: 114 EDLKNRLLRHV---SNAFVEDPLRVLRVARFAARFHYLGFTIAPETMQLMKTLVSSGELS 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L+ ER+W E K L +K+P + + G + ++ + + E
Sbjct: 171 HLTPERVWQEWEKSLSSKHPNIFLSVLKECGALAVVLPEIDALFGVPQPEQWHPEIDTGM 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + L+S + + + I + K
Sbjct: 231 HTLMVSQQASLLSTSLPIRFAAQVHDLGKG-ITPESEWPSHKMHCHTGIKVIKNLCKRVR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L + + + +++ + W+KP
Sbjct: 290 VPNEYKELALLVCEHHTNVHRASELRAQTFIKIFDKMDLWRKPE 333
>gi|225174788|ref|ZP_03728786.1| Polynucleotide adenylyltransferase region [Dethiobacter
alkaliphilus AHT 1]
gi|225169915|gb|EEG78711.1| Polynucleotide adenylyltransferase region [Dethiobacter
alkaliphilus AHT 1]
Length = 472
Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 63/465 (13%), Positives = 137/465 (29%), Gaps = 89/465 (19%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L+ + L K + + IVGG VRD+L + D+D+ T ++ + +
Sbjct: 5 LLALADLAQKEQKEIYIVGGFVRDALRGIPSWDVDLVVTEEAEQFAKRAAWRMRGEYE-- 62
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+ + +Y I + SD +V + D RRDFT+NA+
Sbjct: 63 ------MLDSQSQYSRIFLVASDGRPFSLDLTLVHGGKLEDDLKRRDFTVNAMAVSLNNY 116
Query: 135 VIDYVGGLNDLRNRTIKFIG------------DAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ D + I G IL D +R+ R RF G
Sbjct: 117 LHAP-----DWQESVIDPCGGKEDLHVGRLRLTTEECILRDPVRLFRSARFLLRLG-LQF 170
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN--------------- 227
D L K ++ ++ E+ +LL + + + +
Sbjct: 171 CPDTLAVLKKNAGQIRYAQKMKLSMELFQLLAQPYAADGMKILQDELDVLTHFFAPFARM 230
Query: 228 -----------------GGIFKEIFLDVQEISLDQLSQVIEAE---------QVFEWKID 261
++I + ++ + L ++ ++ ++
Sbjct: 231 NQVIVEGEAVFAHGLEVCRALEKILGENYCLTSELLHKLHAHLRQKVAGNRPRLSFLRLA 290
Query: 262 SLLRFIVLISWQDKKSILSMAKK--------------FSLPREIRYFLISFFNCNFNQKT 307
+L I + + +E +LI +
Sbjct: 291 CILHDIGKVDGVQCERAKQSFNHEIAAEAYIGSLAQRLCFTQEEEMYLIRLICNHSRPLY 350
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLAL----HYNNLTHQDTCFILQVLSDIIHWK---K 360
++ + + L++ + + + +L D K
Sbjct: 351 TREVDLGANLRFFRQFGDTVPELVLLSMANLVARHGMDAMRCRELSCLLDDYFAGKYATL 410
Query: 361 PLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
P ++ ++++ + +PP + +G L + + S E L
Sbjct: 411 PEPVISAREIMEFFNLPPTRAIGKYLEAVYAAQLEGRVKNSGEAL 455
>gi|94309124|ref|YP_582334.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Cupriavidus metallidurans CH34]
gi|166233875|sp|Q1LS11|CCA_RALME RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|93352976|gb|ABF07065.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase
and 2'nucleotidase and phosphatase [Cupriavidus
metallidurans CH34]
Length = 414
Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 60/348 (17%), Positives = 112/348 (32%), Gaps = 25/348 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ QD D + P + +K P + +
Sbjct: 2 QVYAVGGAVRDQLLGKPSQDRDYVVVGATPADM----EAAGFK--PVGKDF--PVFLHPH 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK------VI 136
+ R++ G + D +RRD TINA+ VI
Sbjct: 54 TKAEYALARTERKTAVGYKGFAFYTGADVTLEEDLVRRDLTINAMAQAVDEHDNLVGPVI 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK- 195
D GG DL R + + ED +RILR RF A + E + + + K
Sbjct: 114 DPYGGQKDLAARKFRHV---SDAFAEDPVRILRVARFAARFHEFTVAPETVALMRKIVDA 170
Query: 196 -GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W E+++ L P + G + ++ + E
Sbjct: 171 GEVDALVPERVWQELSRGLMEAKPSRMFDVLRECGALAHLLPELDRLWGVPQRPEYHPEV 230
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ ++ + + +MA ++ + + + I
Sbjct: 231 DTGVHVMMVIDYAASVGASLPVRFAAMAHDLGKG-TTPEDMLPRHIGHEQRGVKLLEAIC 289
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + D +A + + + T + +++ +KP
Sbjct: 290 QRLRVPNDCRELALVVAREHGNIHRSTEFGAAALTRLVERCDALRKPE 337
>gi|147844279|emb|CAN80033.1| hypothetical protein VITISV_007071 [Vitis vinifera]
Length = 693
Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
S +L LL + ++ +VGG VRD ++N + +D D+ TT ++ + F + +
Sbjct: 18 MISSPSWFVLKLLQREGFEAYLVGGCVRDLILNKTPKDFDVITTAKLKQIKKRFRRAQI- 76
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
+ ++ + ++++ + G + V + DF
Sbjct: 77 ---VGRRFPICRVHVKGSVIEVSSF-ETVAKHGEEKEKVSFSQMPSGCDESDF 125
>gi|284159408|ref|YP_440794.3| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia thailandensis E264]
gi|83653760|gb|ABC37823.1| tRNA nucleotidyltransferase [Burkholderia thailandensis E264]
Length = 432
Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 66/356 (18%), Positives = 120/356 (33%), Gaps = 31/356 (8%)
Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
L K VGGA+RD+L+ L V+D D + P+R+ +K P +
Sbjct: 15 LRAVAMKIYAVGGAIRDALLGLPVRDRDYVVVGATPERMAA----QGFK--PVGKDF--P 66
Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK-- 134
+ + R++ T Y F + D +RRD TINA+ +
Sbjct: 67 VFLHPDTREEYALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGA 126
Query: 135 ----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
V+D GG DLR + + +G A +ED +R+LR RF A + + + +
Sbjct: 127 LVGPVVDPFGGQADLRAKLFRHVGGA---FVEDPVRVLRVARFAARFADFAVAPETSALM 183
Query: 191 IKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ + L ER+W E+ + L P + G I ++ +
Sbjct: 184 REMVDAGEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALVRILPEIDALFGVPQRA 243
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
E + ++ S+ + + +
Sbjct: 244 DYHPEVDTGVHVMMVIDHAAKQG----YSLPVRFAALTHDLGKATTPADALPRHIGHEGR 299
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKP 361
S+ +K L L + +A + NL ++++ +KP
Sbjct: 300 SVDLLKPLCERLRVPNECRDLALVVAREHGNLHRVMGMGAAALVRLFERADALRKP 355
>gi|157412497|ref|YP_001483363.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT
9215]
gi|157387072|gb|ABV49777.1| Poly A polymerase family [Prochlorococcus marinus str. MIT 9215]
Length = 401
Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 71/389 (18%), Positives = 124/389 (31%), Gaps = 30/389 (7%)
Query: 30 CIVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKIICRK 86
+VGG +RD ++ + DIDI + + + S T K I ++II +
Sbjct: 33 YLVGGFIRDIILGRVTEEVDIDIVVPLNAIEIAKKISDTIGSKFIILDKKREVVRIILNQ 92
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146
DI + + D RDF+IN++ K +
Sbjct: 93 ISIDIA--------------NQVSSTIEGDLRARDFSINSIAFLFDKKCLFDPLNGLKDL 138
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
++ +L D LRILR FRF + K K + +
Sbjct: 139 ELSLLRTHS-EMNLLNDPLRILRCFRFVSELNFKIDLKLVDFIKKTKGKLYLVAKERINY 197
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
I+K++ +N A++ + IF LD E + L F
Sbjct: 198 E-IHKIVNGRNAHEAVILIKKFNIFGSDDFYKNSFFLDLQEITYTELTKSEKEKLLPLFF 256
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
I I ++F R + +F K I ++ + K +
Sbjct: 257 ISQILD------ELSLERFKFSRAEIAKIKLLRKWHFFLKKKKITQLTESERFGLHKELE 310
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385
L F+ NL ++ + + P L GD + K I G +G +L
Sbjct: 311 MFLPSFIFYLPQNLR---LDWLHRWRNKDDKLFHPSNLLNGDVIKKNLKIKDGPILGELL 367
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ +E E + + ++ I
Sbjct: 368 KYLSKELAYKRLNNFDEAI-YKAKRWIEQ 395
>gi|239813995|ref|YP_002942905.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Variovorax paradoxus S110]
gi|259585857|sp|C5CNM3|CCA_VARPS RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|239800572|gb|ACS17639.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Variovorax paradoxus S110]
Length = 419
Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 55/332 (16%), Positives = 112/332 (33%), Gaps = 34/332 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGA+RD L+ V D D P+ + +P + + +
Sbjct: 2 KTYLVGGALRDRLLGRPVSDHDWLVVGATPEEMAAR------GYLPVGRDF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQG--------- 133
+ R++ + Y + D RRD T+NA+ +
Sbjct: 54 TREEYALARTERKSAPGYRGFTVHASPDVTLEQDLARRDLTVNAIALPAEFVGTDGRFEP 113
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
K+ D G DL ++ ++ + DA ED +RILR RF A + + ++ + +
Sbjct: 114 DAGKLADPFHGRRDLEHKLLRHVTDA---FREDPVRILRVARFAARFDDFSVAPETMALM 170
Query: 191 IKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ + L ER+W E+++ L P + G + +V + +
Sbjct: 171 REMVQAGEADALVPERVWQELSRGLMETRPSRMFEVLRACGALAVLLPEVDRLWGVPQPE 230
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
E + ++ + + S+ + +
Sbjct: 231 AHHPEVDCGVHLMMVIDTSAKL----QASLPVRFACLMHDLGKGTTEPGLLPRHIGHEKR 286
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
S + + + V I +L +A + N+
Sbjct: 287 SAELLHAVCDRWRVPVEIRELAEVVAREHGNI 318
>gi|187925705|ref|YP_001897347.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia phytofirmans PsJN]
gi|226702045|sp|B2T6V1|CCA_BURPP RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|187716899|gb|ACD18123.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia phytofirmans PsJN]
Length = 410
Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 67/349 (19%), Positives = 127/349 (36%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P++++ Y+ P + + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQMVA----QGYR--PVGKDF--PVFLHPQT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ + R++ T Y F + D RRD TINA+ + + VID
Sbjct: 55 HEEYALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KK 195
G D++ R + + LED +RILR RF A + + + + L K
Sbjct: 115 PFNGQGDVQARVFRHV---SDAFLEDPVRILRIARFAARFVDFTVAPETLALMRKMVADG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L +ER+W E+++ L K P + G I ++ + + A+
Sbjct: 172 EVDALVAERVWQEVSRGLMEKKPSRMFEVLRECGALARILPEIDAL----FGVLQRADYH 227
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
E + +V + Q ++ + + + S+ +K
Sbjct: 228 PEVDTGVHVMMVVDHAAQQGYALQVRFAALAHDLGKATTPEDMLPRHIGHEGRSVDLLKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + N+ ++++L +KP
Sbjct: 288 LCERLRVPNDCRDLAVLVAREHGNIHRVMEMGAAALVRLLERSDAIRKP 336
>gi|241664918|ref|YP_002983278.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Ralstonia
pickettii 12D]
gi|240866945|gb|ACS64606.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Ralstonia pickettii 12D]
Length = 428
Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 62/354 (17%), Positives = 119/354 (33%), Gaps = 31/354 (8%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
VGGA+RD+L+ L VQD D + P+ + + K P +
Sbjct: 17 HGLDVYAVGGAIRDALLGLPVQDRDYVVVGATPEDMEVRGFRAVGKDFPVF--------L 68
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK----- 134
+ + R++ T Y + D +RRD TINA+
Sbjct: 69 HPATHAEYALARTERKTAAGYKGFSVYYAPDVTLEDDLIRRDLTINAMAQRVAEDGALVG 128
Query: 135 -VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
VID GG DL +R + + +ED +RILR RF A + + ++ + +
Sbjct: 129 PVIDPYGGQADLASRAFRHV---SDAFMEDPVRILRLARFAARFADFHVAPETNALMQRM 185
Query: 194 KK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + L ER+W EI + L +P + + + ++ +
Sbjct: 186 VQDGEVDALVPERVWQEIARGLMEAHPQRMFAVLRDCDALVRLLPELDRLWGVPQRADYH 245
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E ++ ++ ++ + + S+P
Sbjct: 246 PEVDTGVHTMMVIEMAAAMATPLPVRFAALVHDLGKG----TTPDDILPRHVGHEARSVP 301
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKPL 362
I + +L + +A + N+ D ++++L +KP
Sbjct: 302 LIDAVCQRLRVPTECRELALVVAREHGNIHRCDGFDAAALVRLLERCDALRKPD 355
>gi|323499426|ref|ZP_08104398.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Vibrio
sinaloensis DSM 21326]
gi|323315482|gb|EGA68521.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Vibrio
sinaloensis DSM 21326]
Length = 403
Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 59/342 (17%), Positives = 116/342 (33%), Gaps = 21/342 (6%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+N++V D D P+++++ + + +
Sbjct: 4 YLVGGAVRDQLLNIAVYDKDWVVVGATPEQLVK------QGFTAVGKDF--PVFLHPQTK 55
Query: 89 FDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ T Y + D +RRD TINA+ D G ++D G D
Sbjct: 56 EEHALARTERKTGSGYTGFECYFAADVTLEEDLMRRDLTINAMAQDDAGHIVDPYQGQQD 115
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK----IL 200
L +R ++ + +ED LR+LR RF A + L
Sbjct: 116 LHDRILRHV---SDAFVEDPLRVLRVARFAAKLHHLGFTVANETMELMRTIADSGELRHL 172
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
++ER+W E +K L ++P + + G + + ++ + + E
Sbjct: 173 TAERVWQEWHKSLSTQSPQVFLSILRECGALEVVLPELDALFGVPQPEKWHPEIDTGIHT 232
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+ +S S + + I ++ +
Sbjct: 233 LMVAEQAARLSDSLPVRFASQVHDLGKG-ITPESEWPSHKMHCHTGLKLIKKLCDRVRVP 291
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ ++ + + + L+VL+ W+KP
Sbjct: 292 NEYRDLSLMVCEQHSNIHRAAELRPETKLKVLNKFDVWRKPD 333
>gi|330898889|gb|EGH30308.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae
pv. japonica str. M301072PT]
Length = 409
Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 74/403 (18%), Positives = 134/403 (33%), Gaps = 55/403 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLIK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARILRHV---SPAFAEDPLRVLRVARFAARYAGYGFTIAPETLGLMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-------- 251
L++ER W EI++ L + P I +++ G KE+ +V+ +
Sbjct: 172 LTAERSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 252 ----AEQVFEWKIDSLLRFIVLISWQDK---KSILSMAKKFSLPREIRYFLISFFNCNFN 304
EQ K +R+ L+ K +R
Sbjct: 232 VLSVLEQSARHKHPLTVRWACLLHDLGKGLTPEAEWPRHIAHEHTGLRLIKAVNERFRVP 291
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL------------ 352
+ + + ++ +G + + K L L + ++ + +
Sbjct: 292 RDCQELALLVGQYHTHGHRALELKPSTLLELLQSFDVYRRPQRFEEFIAACEMDARGRHG 351
Query: 353 ---------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386
+ + ++ +++ G+ GK++G+ L
Sbjct: 352 FEQRSYPQADYLRGAAEVARAVSVQPLLEQGLK-GKELGDALK 393
>gi|114319196|ref|YP_740879.1| metal dependent phosphohydrolase [Alkalilimnicola ehrlichii MLHE-1]
gi|122312785|sp|Q0ACP8|CCA_ALHEH RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|114225590|gb|ABI55389.1| metal dependent phosphohydrolase [Alkalilimnicola ehrlichii MLHE-1]
Length = 413
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 62/345 (17%), Positives = 110/345 (31%), Gaps = 32/345 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ V++ D P+ + + P + + +
Sbjct: 2 KVYLVGGAVRDQLLGREVRERDWVVVGARPEDLKQR------GYRPVGQDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ G + D RRD TINA+ G +ID G
Sbjct: 54 THEEYALARTERKTGRGYHGFAFHASPEVTLEQDLARRDLTINAMARADDGTLIDPYDGR 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + ED +RILR RF A + + A +
Sbjct: 114 RDLEQRLLRHV---SPAFAEDPVRILRLARFAARFQPLGFRVAPETLALCRKMVADGEVD 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------------SLDQL 246
L ER+W E+++ L P+ + G + ++ +
Sbjct: 171 ALVPERVWQELSRALLEDTPVPFFRVLRECGALARVLPELDRLFGIPEPEAYHPEGDTGE 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ Q D +R+ VL+ K + S E R + C +
Sbjct: 231 HTLLALAQSARLGGDLPVRWAVLLHDLGKATTPSQVWPRHPAHEHRGVPLVEALCERLRA 290
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
++ +L Y + A L ++
Sbjct: 291 PRECRDLARLVCRYHLQAHRAFELRASTLLKLLEGLDLFRRQARL 335
>gi|330961069|gb|EGH61329.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae
pv. maculicola str. ES4326]
Length = 409
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 76/404 (18%), Positives = 133/404 (32%), Gaps = 57/404 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ L V D+D + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGLPVTDVDWVVVGASTE--EMLIK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYQGQR 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK----KGLKI 199
DL R ++ + ED LR+LR RF A Y E + + LK
Sbjct: 115 DLEARILRHV---SPAFAEDPLRVLRVARFAARYAEHGFSIAPETMDLMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L++ER W EI++ L K P I +++ G E+ +V+ + E
Sbjct: 172 LTAERSWKEISRALMEKQPQVFIQVLHDCGALNELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ S+L + + + + I + + F +
Sbjct: 232 VLSVLEQSAIHQHPLSVRWACLLHDLGKGLTPESEWPRHIA-HEHTGLRLIKAVNERFRV 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369
+ +A L H + +L++L +++P G
Sbjct: 291 PRECQELALLVGQYHTHGHRALELKPSTLLELLQSFDVYRRPQRFEEFIAACEMDARGRH 350
Query: 370 ---------------------------VVKYGIPPGKKVGNILV 386
+++ G+ GK++G+ L
Sbjct: 351 GFEQRNYPQAEYLRGAAQAARAVSVQPLLERGLK-GKELGDALK 393
>gi|113866284|ref|YP_724773.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Ralstonia
eutropha H16]
gi|123134513|sp|Q0KF16|CCA_CUPNH RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|113525060|emb|CAJ91405.1| tRNA nucleotidyltransferase [Ralstonia eutropha H16]
Length = 411
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 58/350 (16%), Positives = 114/350 (32%), Gaps = 31/350 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGA+RD L+ QD D + P ++ YK P + + +
Sbjct: 2 QVYAVGGAIRDELLGKPSQDRDYVVVGATPAQM----EAAGYK--PVGKDF--PVFLHPR 53
Query: 87 KYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK------VI 136
+ R++ + G + D +RRD TINA+ VI
Sbjct: 54 TKEEYALARTERKTAMGYKGFAFYCEPDVTLEDDLVRRDLTINAMARAVDADGNLTGPVI 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK-- 194
D GG DL R + + ED +RILR RF A + E + ++ + +
Sbjct: 114 DPHGGQRDLAARLFRHV---SDAFAEDPVRILRVARFAARFHEFGVAAETMRLMREMVAA 170
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W E+ + L P + G + +++ + E
Sbjct: 171 GEVDALVPERVWQELARGLMEAKPSRMFEVLRECGALARLLPELERLWGVPQRADYHPEI 230
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ ++ + ++ + ++ S ++
Sbjct: 231 DTGVHVMMVIDQAAAMGAPLTVRFAALVHDLGKG----TTPADVLPRHIGHESRSAQLLE 286
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKP 361
+ L + +A + N+ ++++L +KP
Sbjct: 287 DVCVRLRVPNECRDLALVVAREHGNIHRSQEFSAAAVMRLLERCDALRKP 336
>gi|240949655|ref|ZP_04753990.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Actinobacillus minor NM305]
gi|240295913|gb|EER46589.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Actinobacillus minor NM305]
Length = 414
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 55/348 (15%), Positives = 114/348 (32%), Gaps = 24/348 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V+D D P++++ + + P + +
Sbjct: 2 QIYLVGGAVRDQLLGLPVKDRDFLVVGSTPEQLLSLGYQQVGADFPVF--------LHPQ 53
Query: 87 KYFDITTLR----SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGG 141
+ R +G + D +RRD TINA+ D G++ D GG
Sbjct: 54 TKEEYALARQERKHGNGYNGFICDFSPAVTLEQDLIRRDLTINAMAQDPTSGQIFDPFGG 113
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
DL NR ++ + ED LR+LR RF A + + K
Sbjct: 114 KQDLENRLLRHV---SPAFEEDPLRVLRVARFAARFYSFGFRIAKETKRLMRKMAEDGEL 170
Query: 202 SERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
+ + K + +P ++ G +F +++++ E
Sbjct: 171 NHLTAERVWLETEKAFQTDSPHIYFAVLHEVGALAVLFPEMEKLFGKPQPAQYHPEIDCG 230
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
++ ++ + + + ++ + I ++L
Sbjct: 231 IHTLMVIEQAKQLAKKAENPTALLWAALCHDLGKGLTPDDILPHHYGHEMKGITPARELS 290
Query: 318 YLYGDKVMIAKLKIF---LALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + H + + +L++ + + W+KP
Sbjct: 291 NRLKVPSEVKDFALLVTQYHTHCHKMAELRPETVLKLFNALDVWRKPQ 338
>gi|257464494|ref|ZP_05628865.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Actinobacillus minor 202]
gi|257450154|gb|EEV24197.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Actinobacillus minor 202]
Length = 414
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 55/348 (15%), Positives = 114/348 (32%), Gaps = 24/348 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V+D D P++++ + + P + +
Sbjct: 2 QIYLVGGAVRDQLLGLPVKDRDFLVVGSTPEQLLSLGYQQVGADFPVF--------LHPQ 53
Query: 87 KYFDITTLR----SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGG 141
+ R +G + D +RRD TINA+ D G++ D G
Sbjct: 54 TKEEYALARQERKHGNGYNGFICDFSPEVTLEQDLIRRDLTINAMAQDPTSGQIFDPFSG 113
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
DL NR ++ + ED LR+LR RF A + S+ K
Sbjct: 114 KQDLENRLLRHV---SPAFEEDPLRVLRVARFAARFYLLGFRIAEETKSLMRKMATDGEL 170
Query: 202 SERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
+ + K + +P ++ G +F +++++ E
Sbjct: 171 NHLTAERVWLETEKAFQTDSPHIYFAVLHEVGALAVLFPEMEKLFGKPQPAQHHPEIDCG 230
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
++ ++ + + + ++ + I ++L
Sbjct: 231 IHTLMVIEQAKQLAKKAENPTALLWAALCHDLGKGLTPDDILPHHYGHEMKGIAPARELS 290
Query: 318 YLYGDKVMIAKLKIF---LALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + H + + +L++ + + W+KP
Sbjct: 291 NRLKVPSEVKDFALLVTQYHTHCHKMAELRPETVLKLFNALDVWRKPQ 338
>gi|284043350|ref|YP_003393690.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Conexibacter woesei DSM 14684]
gi|283947571|gb|ADB50315.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Conexibacter woesei DSM 14684]
Length = 479
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 70/460 (15%), Positives = 154/460 (33%), Gaps = 95/460 (20%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK-VIPTSISYGTIKII 83
++ +VGGAVRD L++ +D+D+A + R + V P S ++G +++
Sbjct: 23 AGTRTWLVGGAVRDRLLDRVTKDLDLAVDGDVEAAARGLGRAARAAVFPLSEAFGAWRVV 82
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGL 142
R+ + + D +RDFT+NA+ G ID GG
Sbjct: 83 AREGAWQADLAPLT------------GATIEQDLAQRDFTVNAIAEPLAGGDPIDPTGGA 130
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL R ++ + D +R++R RF + G + A + A + + ++
Sbjct: 131 ADLAARRLRMVSPGA--FSADPVRVMRLPRFASELGLEVEVGTLAAARLDAPRLRE-VAQ 187
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL------------------- 243
ER+++E+ +++ A +PL+ + M G + ++ +
Sbjct: 188 ERVFAELRRVVGAPDPLHGLELMGQLGATAAVLPELDALRGVEQSAYHHLDVHDHTLAVL 247
Query: 244 -------------------DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL----- 279
++L +++ E + LRF L+ K
Sbjct: 248 AETVALEGDPAAVFGPERGERLRELLAQPFSDELSRGTALRFGALLHDIAKPQTRGVMES 307
Query: 280 -----------------SMAKKFSLPREIRYFLISFFNCNFN------QKTLSIPEIKKL 316
+ + ++R + + + ++ L+ + +
Sbjct: 308 GRVTFFDHDAQGAELTREILTRLRTSEKLRAHVAALARHHLRLGFLVHERPLTRRDEHRY 367
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS----------DIIHWKKPLFPLT 366
V + + +A + I + L ++PL +
Sbjct: 368 LRRTT-PVEVDVTLLSVADRLATRGRKSDEAIAKHLDLARELIGPALAWESGERPLPLIR 426
Query: 367 GDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
GD++ IP G ++G +L + ++ +
Sbjct: 427 GDELADALEIPRGPRLGTLLAELEAAQYAGEVSTREQAVE 466
>gi|123967695|ref|YP_001008553.1| poly A polymerase family protein [Prochlorococcus marinus str.
AS9601]
gi|123197805|gb|ABM69446.1| Poly A polymerase family [Prochlorococcus marinus str. AS9601]
Length = 405
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 65/389 (16%), Positives = 129/389 (33%), Gaps = 30/389 (7%)
Query: 30 CIVGGAVRDSLMNLSVQ--DIDIATTILPDRV-MRIFSKTRYKVIPTSISYGTIKIICRK 86
+VGG +RD ++ + D+DI + + +I R K+I ++II
Sbjct: 37 YLVGGYIRDIILGRKTEKLDVDIVVPLNAIEIGKKIADNIRSKLIILDKKREVVRIILNN 96
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146
Y DI + + D RD +IN++ K +
Sbjct: 97 IYIDIA--------------NQVSSSIEGDLCSRDLSINSIAFLFDKKSLFDPLNGLKDL 142
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
++ ++ +L D LRILR FRF + K + + +
Sbjct: 143 EISLLRTHSENN-LLNDPLRILRCFRFVSELNFKIDSRLLDFIKKNKRNLHLVAKERITY 201
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
I K++ N L+A++ + IF L LD + I ++ + + D L
Sbjct: 202 E-IQKIVNGANALDAVLLIKKLNIFDTENLFEDSFYLD--LEKINYGELDQEEQDKYLPS 258
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ D ++ + + K +I ++ + + +
Sbjct: 259 FFIAQILDVVTLEK----LQFSKADIAKNKLLRKWHLLLKNKNIAQLDEFDRFKLHQELE 314
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385
L F+ NL ++ + + P + GD + K I G +G +L
Sbjct: 315 MFLPSFIFYLPENL---QLDWLHRWRDNDDKLFHPSNIVNGDVIKKNLEIKDGPILGELL 371
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ +E E + + ++ I
Sbjct: 372 QYLSKELAYKRLNNFDEAI-YKAKRWIEQ 399
>gi|295677988|ref|YP_003606512.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia sp. CCGE1002]
gi|295437831|gb|ADG17001.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia sp. CCGE1002]
Length = 410
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 66/349 (18%), Positives = 121/349 (34%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGAVRD L+ + VQD D + P++++ Y+ P + + +
Sbjct: 3 IYAVGGAVRDELLGVPVQDRDYVVVGATPEQMVA----QGYR--PVGKDF--PVFLHPQT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ + R++ T Y F + D RRD TINA+ + + VID
Sbjct: 55 HEEYALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KK 195
G DL+ R + + LED +RILR RF A + + + + L +
Sbjct: 115 PFNGQADLQARLFRHV---SDAFLEDPVRILRIARFAARFVDFTVAPETLALMREMVADG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
L +ER+W E+++ L K P + G I ++ + E
Sbjct: 172 EADALVAERVWQEVSRGLMEKKPSRMFDVLRECGALARILPEIDALFGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ +L + ++ + + S+ +K
Sbjct: 232 TGVHVMMVLDHAARQGYTLPVRFAALTHDL----GKATTPEEQLPRHIGHEGRSVDLLKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + N+ ++++L +KP
Sbjct: 288 LCERLRVPNECRDLAVLVAREHGNIHRVMEMGAAALVRLLERSDAIRKP 336
>gi|224824148|ref|ZP_03697256.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Lutiella nitroferrum 2002]
gi|224603567|gb|EEG09742.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Lutiella nitroferrum 2002]
Length = 408
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 61/341 (17%), Positives = 116/341 (34%), Gaps = 18/341 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGAVRD L+ L V D D P + P + + +
Sbjct: 2 KIYQVGGAVRDRLLGLPVTDHDWVVVGATPQDMTAR------GFRPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFT----RDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ Y F + D RRD TINA+ +D+ G++ID G
Sbjct: 54 THEEYALARTERKVGRGYHGFTFHADRDVTLEEDLARRDLTINAMASDETGQIIDPYHGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILS 201
+DL+NR ++ + ED +R+LR RF A +G + G L
Sbjct: 114 DDLKNRILRHV---SPAFAEDPVRVLRLARFAARFGFSIAPETLQLMRTMVANGEVDALV 170
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ER+W E + L P + + G I +V + E +
Sbjct: 171 AERVWQETARGLMENQPSRFFLVLRECGALARILPEVDALFGVPQRADYHPEIDTGDHVM 230
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
++ + + ++ L+ + + + + + +
Sbjct: 231 RVIDYAAVQQLPLPVRFAALTHDLGKA-LTPAELLPRHLGHEARGEKPLLALSERLRVPA 289
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D +A++ + +L++ + ++P
Sbjct: 290 DCRDLARITCLHHTKVHVAGDMRPDTVLKMFRETDALRRPE 330
>gi|325182899|emb|CCA17355.1| tRNA nucleotidyltransferase putative [Albugo laibachii Nc14]
Length = 559
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 88/484 (18%), Positives = 156/484 (32%), Gaps = 85/484 (17%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-----ILPDRVMRIFSKTRYK 69
L +I+ + + GG VRD L+ L DIDIA V + + K
Sbjct: 71 LRDIVEQ-SDCNVTLRVAGGWVRDKLLGLDSSDIDIALDTITGSGFAQFVNKYEKEHGGK 129
Query: 70 VIPTS---------ISYGTIKIICRKKYF-DITTLRSDLITDGRYAKVVFTRDWKADSLR 119
TI + + D LRS+ + V + D+ R
Sbjct: 130 THSIGVIKVNPEQSKHLETITMKFDDIGWVDFVNLRSETYSKDHRIPDVQFGTPQEDAER 189
Query: 120 RDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RDFTIN+L+ + I+ G+ DL+ I+ D+ L+D LR+LR RF + +
Sbjct: 190 RDFTINSLFYNISNDKIEDFTERGIGDLKKGIIRTPLDSRVTFLDDPLRVLRAIRFASRF 249
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKL--LEAKNPLNAIVHMYNGGIFKE 233
K ++ A + K ++ +S ER+ E+ + + +P A M+ G+FK
Sbjct: 250 NFKLDENLRQAAQLDDVKDALIQKVSRERVGKELLGMLEGPSAHPQRAFTLMHELGLFKC 309
Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF-------------IVLISWQDKKSILS 280
+FL Q+ + + + K D + V +
Sbjct: 310 VFLVPQQSRILDENAKNVPSDIISQKWDHAYKHSTRMHQYLNTRNDCVELEIDKMNEAKR 369
Query: 281 MAKKFSL----------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
K + P I + N + +I
Sbjct: 370 HRYKLRILASFLCPLSSFDVMESNKKIRVPYYIIKESLKLRNRDAGDIADTILANCGELR 429
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL------------- 365
+ + ++K L L + + + + + P+
Sbjct: 430 NLVHEKVFDRVKTGLLLRKVGSLWKVCRDVACISDMVENCTTSQSPILAKYDSLTTFVAT 489
Query: 366 -------------TGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
TG DV++ GI PG V IL + + + E ++L
Sbjct: 490 SNLQGVWSWKPLMTGSDVIQVLGISPGPDVKKILDEIIVWQLEDPDR-TYESCVEHFKRL 548
Query: 412 IASS 415
+S+
Sbjct: 549 YSSA 552
>gi|78213900|ref|YP_382679.1| poly A polymerase family protein [Synechococcus sp. CC9605]
gi|78198359|gb|ABB36124.1| poly A polymerase family protein [Synechococcus sp. CC9605]
Length = 397
Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 69/381 (18%), Positives = 129/381 (33%), Gaps = 35/381 (9%)
Query: 31 IVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+N D+D+ + + ++ GT ++
Sbjct: 35 LVGGAVRDGLLNRLQEQPDLDLVVPSDAIALTKALAQELD---------GTCVVLD---- 81
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY--ADQQGKVIDYVGGLNDLR 146
+ R L + D RRD+ +NA+ G++ D GGLNDL+
Sbjct: 82 AERNIARLVLGGWTVDIARQDGDRIEDDLWRRDYRLNAIAVSLQPWGELWDPTGGLNDLQ 141
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
+ + A+ +++D LR+LR R A I S + + L + ERI
Sbjct: 142 QGCLTAVSQAN--LIDDPLRLLRGLRLMAEIP-LTITSQTMGWIERHAARLPEAAPERIL 198
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
+E+ +L+ K+ AI + + + Q + + E + L
Sbjct: 199 AELQRLVRGKHADAAIAALRSLPLLHPWAAAGQPPTPGNTEGLSSEETAAAVPLARLTAL 258
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ K+ R +R + + +++
Sbjct: 259 VS----------DEGLKQLRASRALRQRCKRLRSWQQRTGQAPESLSENDQLRLHEELEG 308
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNIL 385
+ L L + ++ + P P+ G+ ++ + PG ++G +L
Sbjct: 309 DLPALALQLPM----PEKGIWLRRWRDAEDPLFHPRTPIDGNGLLTALKVEPGPRLGRLL 364
Query: 386 VHCKQEWINSSFQLSQEDLHH 406
H K E Q E L
Sbjct: 365 HHLKLEHAFGRIQTPSEALKE 385
>gi|331017638|gb|EGH97694.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas syringae pv. lachrymans str. M302278PT]
Length = 409
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 72/404 (17%), Positives = 132/404 (32%), Gaps = 55/404 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLVK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPDVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARVLRHV---SPAFAEDPLRVLRVARFAARYAGHGFTIAPETLELMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-------- 251
L++ER W EI++ L P + +++ G E+ +V+ +
Sbjct: 172 LTAERSWKEISRALMEDQPQVFVQVLHDCGALSELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 252 ----AEQVFEWKIDSLLRFIVLISWQDK---KSILSMAKKFSLPREIRYFLISFFNCNFN 304
EQ K +R+ L+ K +R
Sbjct: 232 VLSVLEQSAIHKHPLTVRWACLLHDLGKGLTPESEWPRHIAHEHTGLRLIKAVNERFRVP 291
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL------------ 352
+ + + ++ +G + + K L L ++ ++ + +
Sbjct: 292 RDCQELALLVGQYHTHGHRALELKPSTLLELLHSFDVYRRPQRFEEFIAACEMDARGRHG 351
Query: 353 ---------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
+ ++ +++ G+ GK++G+ L
Sbjct: 352 FEQRSYPQADYLRGAAHAARTVSVQPLLEKGLK-GKELGDALKE 394
>gi|330963838|gb|EGH64098.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae
pv. actinidiae str. M302091]
Length = 409
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 77/403 (19%), Positives = 133/403 (33%), Gaps = 55/403 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLVK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARVLRHV---SPAFAEDPLRVLRVARFAARYASHGFTIAPETLELMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-------- 251
L++ER W EI++ L P I +++ G E+ +V+ +
Sbjct: 172 LTAERSWKEISRALMEDQPQVFIQALHDCGALSELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 252 ----AEQVFEWKIDSLLRFIVLISWQDK---KSILSMAKKFSLPREIRYFLISFFNCNFN 304
EQ K +R+ L+ K +R
Sbjct: 232 VLSVLEQSAIHKHPLTVRWACLLHDLGKGLTPESEWPRHIAHEHTGLRLIKAVNERFRVP 291
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD---------- 354
+ + + ++ +G + + K L L ++ ++ + L+
Sbjct: 292 RDCQELALLVGQYHTHGHRALELKPSTLLELLHSFDVYRRPQRFEEFLAACEMDARGRHG 351
Query: 355 IIHWKKPLFP-LTGDD----------VVKYGIPPGKKVGNILV 386
P L G +++ G+ GK++G+ L
Sbjct: 352 FEQRSYPQADYLRGAAHAARTVAVQPLLEQGLK-GKELGDALK 393
>gi|159902697|ref|YP_001550041.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT
9211]
gi|159887873|gb|ABX08087.1| Poly A polymerase family [Prochlorococcus marinus str. MIT 9211]
Length = 397
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 55/378 (14%), Positives = 106/378 (28%), Gaps = 29/378 (7%)
Query: 31 IVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFS-KTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD+L+++ D+D+ + FS + + +++
Sbjct: 28 LVGGAVRDALLDVLQHKPDLDLIVPSKAVEFAKEFSDREGGSCVVLDKERDIARLVLNGW 87
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
D+ + D RRD+TINA+ I L
Sbjct: 88 TIDLA--------------CQVGNSLEEDLWRRDYTINAIALTLSNDPIIIDPTGGILDL 133
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
K + + +++D LR+LR FR + + I AK +
Sbjct: 134 EKKKLVAISQQNLIDDPLRLLRGFRLSSELRFDLDEMTKNFIKINAKLLKHVAPERIKGE 193
Query: 208 EINKLLEAKNPLNAIVHMYNG-GIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
+ + G + + L Q ++R
Sbjct: 194 LERLVHGDWADQVILQIKKLGLLEPWQSTDQFFTFNNQSLETTSAFHQNELKIALPIVRL 253
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
L+S Q K + KK ++ E ++
Sbjct: 254 TNLLSDQGLKELSFSRKKLQN--------CHLLRFWQHKNDGLAFETLDEIERL--QLHK 303
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP-GKKVGNIL 385
AL + ++ + + P P+ G + + P G +G ++
Sbjct: 304 DLETFLPALILQLPQRDQSAWLKRWRDNADPLFHPSCPIDGFTLQEMFQSPKGPWIGQLM 363
Query: 386 VHCKQEWINSSFQLSQED 403
+E +E
Sbjct: 364 NLLCKERAFGRLHNRKEA 381
>gi|330955101|gb|EGH55361.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae
Cit 7]
Length = 409
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 76/431 (17%), Positives = 141/431 (32%), Gaps = 70/431 (16%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLIK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARILRHV---SPAFAEDPLRVLRVARFAARYAGYGFTIAPETLGLMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-------- 251
L++ER W EI++ L + P I +++ G KE+ +V+ +
Sbjct: 172 LTAERSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 252 ----AEQVFEWKIDSLLRFIVLISWQDK---KSILSMAKKFSLPREIRYFLISFFNCNFN 304
EQ K +R+ L+ K +R +
Sbjct: 232 VLSVLEQSARHKHPLTVRWACLLHDLGKGLTPEAEWPRHIAHEHTGLRLIKVVNERFRVP 291
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS----------- 353
+ + + ++ +G + + K L L + ++ + ++
Sbjct: 292 RDCQELALLVGQYHTHGHRALELKPSTLLELLQSFDVYRRPQRFEEFIAACEMDARGRHG 351
Query: 354 ----------DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED 403
+ + ++ +++ G+ GK++G+ L + +
Sbjct: 352 FEQRSYPQAGYLRGAAEAARAVSVQPLLEKGLK-GKELGDAL---------------KNE 395
Query: 404 LHHLLRKLIAS 414
L+ A
Sbjct: 396 RLKALKTYKAE 406
>gi|257483099|ref|ZP_05637140.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas syringae pv. tabaci ATCC 11528]
gi|330985803|gb|EGH83906.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas syringae pv. lachrymans str. M301315]
gi|331011668|gb|EGH91724.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 409
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 76/412 (18%), Positives = 135/412 (32%), Gaps = 57/412 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLVK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARILRHV---SPAFAEDPLRVLRVARFAARYARYGFTIAPETLGLMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-------- 251
L++ER W EI++ L P I +++ G KE+ +V+ +
Sbjct: 172 LTAERSWKEISRALMEDQPQVFIQVLHDCGALKELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 252 ----AEQVFEWKIDSLLRFIVLISWQDK---KSILSMAKKFSLPREIRYFLISFFNCNFN 304
EQ K +R+ L+ K +R
Sbjct: 232 VLSVLEQSAIHKHPLTVRWACLLHDLGKGLTPEAEWPRHIAHEHTGLRLIKAVNERFRVP 291
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL------------ 352
++ + + ++ +G + + K L L + ++ + +
Sbjct: 292 RECQELALLVGQYHTHGHRALELKPSTLLELLQSFDVYRRPQRFEEFIAACEMDARGRHG 351
Query: 353 ---------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV--HCKQEWI 393
+ + ++ +++ G GK++G+ L K I
Sbjct: 352 FEQRSYPQADYLRGAAQAARAVSVQPLLEKGFK-GKELGDALKNERLKALKI 402
>gi|32490987|ref|NP_871241.1| hypothetical protein WGLp238 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|73619902|sp|Q8D2W4|CCA_WIGBR RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|25166193|dbj|BAC24384.1| cca [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 403
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 81/349 (23%), Positives = 138/349 (39%), Gaps = 25/349 (7%)
Query: 30 CIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+N+ +++ D P+ ++++ K P S+ + K +
Sbjct: 4 YLVGGAVRDGLLNMPIKEKDWVVVESTPEEMIKLGYK------PVGKSF--PVFLHPKSH 55
Query: 89 FDITTLRSDLITDGRYAKVVFT----RDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ Y + D RRD TINA+ D+ G +ID GG+ D
Sbjct: 56 EEHALARTERKNGYGYKGFKLYTSSKITLEEDLKRRDLTINAIAKDKNGNLIDPYGGIKD 115
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDGLVASIKAKKGLKILSS 202
L + +K I + ED LR+LR RF A+ N IDS L + L +
Sbjct: 116 LYEKKLKHI---SNSFKEDPLRVLRTARFAAYLFHLNFFIDSKTLKIMSEMIDELFFIPV 172
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
ERIW E K L +NP + G K+IF +++ + + +
Sbjct: 173 ERIWLETKKALLCRNPHVYFKVLLKCGALKKIFPEIENL----FHIKSFYNKNINLGSLT 228
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
L ++ I + + + F CN L + +I K L +
Sbjct: 229 LRALYESSLISNEIKIRFSMLCHNFDKFNSNNKKNSFYCNKINGNLILNKICKRLKLSNE 288
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
++K+ + + +++ L+DI WK P DD++
Sbjct: 289 IKKLSKIALDHHDTLYKIFFISAKMVIKFLNDINAWKNPKII---DDLI 334
>gi|260775197|ref|ZP_05884095.1| tRNA nucleotidyltransferase [Vibrio coralliilyticus ATCC BAA-450]
gi|260608898|gb|EEX35060.1| tRNA nucleotidyltransferase [Vibrio coralliilyticus ATCC BAA-450]
Length = 405
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 65/343 (18%), Positives = 126/343 (36%), Gaps = 19/343 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ +VGGAVRD L+ + V D D +V+ + + + K
Sbjct: 2 QIFLVGGAVRDKLLKIDVYDQDWVVVGASPQVL-----LDQGFVAVGKDF--PVFLHPKT 54
Query: 88 YFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ T Y + D +RRD TINA+ D+QG++ID GG
Sbjct: 55 KQEHALARTERKTGSGYKGFDCYFAPDVTLEEDLIRRDLTINAMAEDEQGRIIDPYGGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK----I 199
DL +R ++ + ED LR+LR RF A + A+
Sbjct: 115 DLNDRVLRHV---SDAFTEDPLRVLRVARFAAKLHHLGFTIAPETQQLMAQIVQSGELIH 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L++ER+W E +K L ++P + + + G K I ++ + + E
Sbjct: 172 LTAERVWQEWHKSLSTQDPQIFLSVLRDCGALKVILPELDRLFGVPQPEKWHPEIDTGIH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ + L+S ++ + + + + I ++ + +
Sbjct: 232 NLLVAKQAALLSPSNRVRFAAQMHDLGKGVTPKNEW-PSHKKHCHTGLSIIKKLCERVRI 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A + + + I+++L+ W+KP
Sbjct: 291 PNEYRDLALMVCEQHSNIHRAAELRADTIIKILNGFDVWRKPE 333
>gi|169632938|ref|YP_001706674.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter baumannii SDF]
gi|226702126|sp|B0VUU0|CCA_ACIBS RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|169151730|emb|CAP00532.1| tRNA nucleotidyl transferase [Acinetobacter baumannii]
Length = 412
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 60/344 (17%), Positives = 115/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ S Q+ D + P+ ++ P + + +
Sbjct: 2 QVYLVGGAVRDYLLGHSYQEKDYVVVGATPEHMLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ DQ GK+ D GG
Sbjct: 54 TKEEYALARTERKSGQGYHGFQFFTDTTVSLEDDLIRRDLTINAIAMDQDGKIYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
NDL N+ ++ + ED LR+LR RF A Y +
Sbjct: 114 NDLENKILRHV---SEAFAEDPLRVLRVARFAARYFPYGFQIAPETLQLMQTMADSGELD 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E ++ L + + + G K +F ++ + E
Sbjct: 171 ALTPERVWKETSRALMENHADIYFQTLRDCGALKHLFPEIDALFGVPQRPEYHPEVDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L+ S ++ + + + + ++ +
Sbjct: 231 HTLMSLQ-QACKSNYSLDVRFAVLVHDLGKALTPAKELPRHIMHEERGIKPVTQLCERLR 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + + ++L + ++P
Sbjct: 290 VPTQTKQLALSVCKEHLKCHQIMSLKPGTLWRLLQRLDVLRRPE 333
>gi|167568404|ref|ZP_02361278.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia oklahomensis C6786]
Length = 413
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 117/349 (33%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ L V+D D + P+++ +K P + +
Sbjct: 3 VYAVGGAIRDELLGLPVRDRDYVVVGATPEQMAA----QGFK--PVGKDF--PVFLHPDT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ + R++ T Y F + D RRD T+NA+ + V+D
Sbjct: 55 HEEYALARTERKTAAGYHGFQFYYAPDVTLEQDLARRDLTVNAMAREVSPDGALVGPVVD 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
G DLR + + +GDA ED +RILR RF A + + + + V K
Sbjct: 115 PFDGQADLRAKVFRHVGDA---FAEDPVRILRVARFAARFADFAVAPETAVLMRKMVDAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L ER+W E+ + L P + G I ++ + E
Sbjct: 172 EVDALVPERVWQEVARGLMEGRPSRMFAVLRECGALVRILPEIDALFGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ S+ + + + S+ +K
Sbjct: 232 TGVHVMMVIDHAAKQG----YSLPVRFAALTHDLGKATTPADVLPRHIGHEGRSVELLKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++ +KP
Sbjct: 288 LCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRLFERADALRKP 336
>gi|260436514|ref|ZP_05790484.1| poly A polymerase family protein [Synechococcus sp. WH 8109]
gi|260414388|gb|EEX07684.1| poly A polymerase family protein [Synechococcus sp. WH 8109]
Length = 389
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 58/379 (15%), Positives = 116/379 (30%), Gaps = 31/379 (8%)
Query: 31 IVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L++ D+D+ + + ++ +GT ++
Sbjct: 27 LVGGAVRDGLLDRLQEQPDLDLVVPSDAIALTKALAQEL---------HGTCVVLD---- 73
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148
+ + R L + D RRD+ +NA+ Q + +
Sbjct: 74 AERSIARLVLGGWTVDIARQDGDRIEDDLWRRDYRLNAIAVSLQPWGELWDPTGGLSDLQ 133
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208
+ +++D LR+LR R A I S + L + ERI +E
Sbjct: 134 QGCLTAISEANLIDDPLRLLRGLRLIAEIP-LTISSQTMEWIEHHAARLPEAAPERILAE 192
Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
+ +L+ ++ A+ + + + Q + + + E + L +
Sbjct: 193 LQRLVRGEHADAAMAALRSLPLLHPWAAGGQPPTPGNIDGLTSEEAASAVPLARLTALVS 252
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ R +R + ++
Sbjct: 253 ----------DEGLSQLRASRALRQRCKRLRSWQQRTGQAPDALPDSD----RLQLHEEL 298
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVH 387
AL + ++ + + P P+ G+ ++ I PG +G +L H
Sbjct: 299 EGDLPALVLQLPMPEKEIWLRRWRNAKDPLFHPRTPVDGNGLLTALEIEPGPHLGRLLHH 358
Query: 388 CKQEWINSSFQLSQEDLHH 406
K E Q E L
Sbjct: 359 LKLEHAFGRIQTPSEALKE 377
>gi|188590992|ref|YP_001795592.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Cupriavidus taiwanensis LMG 19424]
gi|226702046|sp|B2AGH1|CCA_CUPTR RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|170937886|emb|CAP62870.1| tRNA nucleotidyl transferase [Cupriavidus taiwanensis LMG 19424]
Length = 415
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 56/347 (16%), Positives = 114/347 (32%), Gaps = 25/347 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGA+RD L+ QD D + P + Y+ P + + +
Sbjct: 2 QVYAVGGAIRDELLGKPSQDRDYVVVGATPAEM----EAAGYR--PVGKDF--PVFLHPR 53
Query: 87 KYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK------VI 136
+ R++ + G + D +RRD TINA+ VI
Sbjct: 54 TQEEYALARTERKTAMGYKGFAFYCEPDVTLEDDLVRRDLTINAMARAVDADGNLTGPVI 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK-- 194
D GG DL R + + ED +RILR RF A + + N+ ++ + +
Sbjct: 114 DPHGGQRDLAARLFRHV---SDAFAEDPVRILRLARFAARFHDFNVAAETMRLMREMVAA 170
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W E+ + L P + G + +++ + E
Sbjct: 171 GEVDALVPERVWQELARGLMEARPSRMFEVLRECGALARLLPELERLWGVPQRADFHPEV 230
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ ++ + ++ ++ + + + E+
Sbjct: 231 DTGVHVMMVIDCAAALGAPLPVRFAALVHDLGKG-TTPEDVLPRHIGHELRSVRLLEEVC 289
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + +A + H + ++++L +KP
Sbjct: 290 ARLRVPNECRDLAVVVAREHGHIHRSLELGAAAVVRLLERCDALRKP 336
>gi|330938472|gb|EGH42075.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae
pv. pisi str. 1704B]
Length = 409
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 74/403 (18%), Positives = 134/403 (33%), Gaps = 55/403 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLIK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARILRHV---SPAFAEDPLRVLRVARFAARYAGYGFTVAPETLGLMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-------- 251
L++ER W EI++ L + P I +++ G KE+ +V+ +
Sbjct: 172 LTAERSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 252 ----AEQVFEWKIDSLLRFIVLISWQDK---KSILSMAKKFSLPREIRYFLISFFNCNFN 304
EQ K +R+ L+ K +R
Sbjct: 232 VLSVLEQSARHKHPLTVRWACLLHDLGKGLTPEAEWPRHIAHEHTGLRLIKAVNERFRVP 291
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL------------ 352
+ + + ++ +G + + K L L + ++ + +
Sbjct: 292 RDCQELALLVGQYHTHGHRALELKPSTLLELLQSFDVYRRPQRFDEFIAACEMDARGRHG 351
Query: 353 ---------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386
+ + ++ +++ G+ GK++G+ L
Sbjct: 352 FEQRSYPQADYLRGAAEVARAVSVQPLLEQGLK-GKELGDALK 393
>gi|28867772|ref|NP_790391.1| tRNA nucleotidyltransferase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|73619825|sp|Q88A53|CCA_PSESM RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|28851007|gb|AAO54086.1| tRNA nucleotidyltransferase [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 409
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 73/403 (18%), Positives = 132/403 (32%), Gaps = 55/403 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLVK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPDVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARVLRHV---SPAFAEDPLRVLRVARFAARYAGHGFTVAPETLELMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-------- 251
L++ER W EI++ L P I +++ G E+ +V+ +
Sbjct: 172 LTAERSWKEISRALMEDQPQVFIQVLHDCGALSELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 252 ----AEQVFEWKIDSLLRFIVLISWQDK---KSILSMAKKFSLPREIRYFLISFFNCNFN 304
EQ K +R+ L+ K +R
Sbjct: 232 VLSVLEQSAIHKHPLTVRWACLLHDLGKGLTPESEWPRHIAHEHTGLRLIKAVNERFRVP 291
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL------------ 352
+ + + ++ +G + + K L L ++ ++ + +
Sbjct: 292 RDCQELALLVGQYHTHGHRALELKPSTLLELLHSFDVYRRPQRFEEFIAACEMDARGRHG 351
Query: 353 ---------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386
+ ++ +++ G+ GK++G+ L
Sbjct: 352 FEQRSYPQADYLRGAAHAARTVSVQPLLEKGLK-GKELGDALK 393
>gi|291278490|ref|YP_003495325.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Deferribacter
desulfuricans SSM1]
gi|290753192|dbj|BAI79569.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Deferribacter
desulfuricans SSM1]
Length = 434
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 78/444 (17%), Positives = 155/444 (34%), Gaps = 72/444 (16%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSI 75
+L L++ + VGG VRD L+ +D+D+ I + K
Sbjct: 16 EVLEDLSE--YEFYFVGGFVRDVLLGKKAKDVDLVPFGIDYKDFAWLLKKKLQATSVPFK 73
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
I++I + D++ R + D +RDFTIN L D +G +
Sbjct: 74 D--NIRLILKDFVIDVSKPRGK--------------NIIEDLQKRDFTINNLATDIKGNI 117
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
I L + + + +D +RILR FRF + +I++ + K
Sbjct: 118 IGDTNDLKNKVIKYV-----YEDVFNDDPVRILRAFRFVSQLDF-DIENKTFEKIFREKN 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS------------- 242
LK ERI+ E+ KLL+ K+ A+ M + + +F + + I
Sbjct: 172 LLKNAPFERIYDELIKLLKGKSNFKALKLMQHSEVLFTLFPEFKNIEGLPQGKYHQDCAL 231
Query: 243 -------------LDQLSQVIEAEQVFEWKIDSL------------LRFIVLISWQDKKS 277
D+L++ E + + + V + K
Sbjct: 232 THTFRVVEKTRDITDKLNKNDETKNILLLSAFFHDVGKAVAGERNNHKNFVGHEEESAKI 291
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQ--------KTLSIPEIKKLFYLYGDKVMIAKL 329
KKF + ++ ++ + K ++ +++++ L
Sbjct: 292 AEKYLKKFPIKKKNLKEVLHLIKKHTKIRIYASEKAKDNTLKRFIYNNAELLEEIILFTL 351
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
L +N +T ++ LS + W K + G+ +++ IP K IL
Sbjct: 352 ADNLTKGHNINDIYETIIRIRKLSKELDWSKKEL-INGNTLIELNIPDKTKYATILKDVH 410
Query: 390 QEWINSSFQLSQEDLHHLLRKLIA 413
++ + +E + ++L + +
Sbjct: 411 EKLVIGILPTKEEAIKYILDRYLK 434
>gi|72383343|ref|YP_292698.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. NATL2A]
gi|72003193|gb|AAZ58995.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus str. NATL2A]
Length = 395
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 60/385 (15%), Positives = 109/385 (28%), Gaps = 35/385 (9%)
Query: 31 IVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIF-SKTRYKVIPTSISYGTIKIICRKK 87
+VGG+VRD+L+N Q D+D K I +++
Sbjct: 34 LVGGSVRDALLNKLSQKPDLDFVIPTNAINFSENLSKKINGTFIKLDEKRDIARLVINGW 93
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
D + + D LRRDF INA+ GK +
Sbjct: 94 TLDFA--------------RQVGENLQDDLLRRDFRINAIALRLTGKPEIFDPTGGINDL 139
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
++ K + + +L+D LRILR FRF + K I
Sbjct: 140 KSKKIVAISEKNLLDDPLRILRGFRFMCELDFELEKKTKTFLKNNVDKLSNIAPERMKME 199
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267
+ + N + E + + + + K L F
Sbjct: 200 ILKIVNSKWNSS--------VWKTYLELQLLNEWNDNNFPYIELERKDISTKN---LIFG 248
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
+S + + + + L + F ++ I
Sbjct: 249 SFLSKLIFLLSDEGLSRLTFSKNQIKRCKNLRFWVHKINKLDDLSEDERF-----QLHID 303
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV-VKYGIPPGKKVGNILV 386
+ + + ++ + P P G + +GIPPG +G ++
Sbjct: 304 LEEDLPSFILFLKERDSSPWLKRWKDPHDPLFHPSAPFDGHLLQKAFGIPPGPFLGELIR 363
Query: 387 HCKQEWINSSFQLSQEDLHHLLRKL 411
+ +E + E + RK
Sbjct: 364 YLSREKAYGRISTNNEA-MEVARKW 387
>gi|213967682|ref|ZP_03395829.1| tRNA nucleotidyltransferase [Pseudomonas syringae pv. tomato T1]
gi|301382742|ref|ZP_07231160.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas syringae pv. tomato Max13]
gi|302063464|ref|ZP_07255005.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas syringae pv. tomato K40]
gi|213927458|gb|EEB61006.1| tRNA nucleotidyltransferase [Pseudomonas syringae pv. tomato T1]
Length = 409
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 73/403 (18%), Positives = 133/403 (33%), Gaps = 55/403 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLVK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPDVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARVLRHV---SPAFAEDPLRVLRVARFAARYAGHGFTVAPETLELMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-------- 251
L++ER W EI++ L P I +++ G E+ +V+ +
Sbjct: 172 LTAERSWKEISRALMEDQPQVFIQVLHDCGALSELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 252 ----AEQVFEWKIDSLLRFIVLISWQDK---KSILSMAKKFSLPREIRYFLISFFNCNFN 304
EQ K +R+ L+ K +R
Sbjct: 232 VLSVLEQSAIHKHPLTVRWACLLHDLGKGLTPESEWPRHIAHEHTGLRLIKAVNERFRVP 291
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL------------ 352
++ + + ++ +G + + K L L ++ ++ + +
Sbjct: 292 RECQELALLVGQYHTHGHRALELKPSTLLELLHSFDVYRRPQRFEEFIAACEMDARGRHG 351
Query: 353 ---------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386
+ ++ +++ G+ GK++G+ L
Sbjct: 352 FEQRSYPQADYLRGAAHAARTVSVQPLLEKGLK-GKELGDALK 393
>gi|330878403|gb|EGH12552.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae
pv. morsprunorum str. M302280PT]
Length = 409
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 77/403 (19%), Positives = 134/403 (33%), Gaps = 55/403 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLVK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARVLRHV---SPAFAEDPLRVLRVARFAARYASHGFTIAPETLELMRKLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-------- 251
L++ER W EI++ L + P I +++ G E+ +V+ +
Sbjct: 172 LTAERSWKEISRALMEEQPQVFIQVLHDCGALSELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 252 ----AEQVFEWKIDSLLRFIVLISWQDK---KSILSMAKKFSLPREIRYFLISFFNCNFN 304
EQ K +R+ L+ K +R
Sbjct: 232 VLSVLEQSAVHKYPLTVRWACLLHDLGKGLTPESEWPRHIAHEHTGLRLIKAVNERFRAP 291
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD---------- 354
+ + + ++ +G + + K L L ++ ++ + L+
Sbjct: 292 RDCQELALLVGQYHTHGHRALELKPSTLLELLHSFDVYRRPQRFEEFLAACEMDARGRNG 351
Query: 355 IIHWKKPLFP-LTGDD----------VVKYGIPPGKKVGNILV 386
P L G +++ G+ GK++G+ L
Sbjct: 352 FEQRSYPQADYLRGAAHAARTVAVQPLLEQGLK-GKELGDALK 393
>gi|302130715|ref|ZP_07256705.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 409
Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 73/403 (18%), Positives = 133/403 (33%), Gaps = 55/403 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLVK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPDVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQQ 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARVLRQV---SPAFAEDPLRVLRVARFAARYAGHGFTVAPETLELMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-------- 251
L++ER W EI++ L P I +++ G E+ +V+ +
Sbjct: 172 LTAERSWKEISRALMEDQPQVFIQVLHDCGALSELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 252 ----AEQVFEWKIDSLLRFIVLISWQDK---KSILSMAKKFSLPREIRYFLISFFNCNFN 304
EQ K +R+ L+ K +R
Sbjct: 232 VLSVLEQSAIHKHPLTVRWACLLHDLGKGLTPESEWPRHIAHEHTGLRLIKAVNERFRVP 291
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL------------ 352
++ + + ++ +G + + K L L ++ ++ + +
Sbjct: 292 RECQELALLVGQYHTHGHRALELKPSTLLELLHSFDVYRRPQRFEEFIAACEMDARGRHG 351
Query: 353 ---------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386
+ ++ +++ G+ GK++G+ L
Sbjct: 352 FEQRSYPQADYLRGAAHAARTVSVQPLLEKGLK-GKELGDALK 393
>gi|153951070|ref|YP_001398289.1| polyA polymerase family protein [Campylobacter jejuni subsp. doylei
269.97]
gi|152938516|gb|ABS43257.1| polyA polymerase family protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 372
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 65/407 (15%), Positives = 131/407 (32%), Gaps = 48/407 (11%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYK 69
++ DL I L ++ +VGG+VRD + L + D DI I P +I K +
Sbjct: 10 NNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKLGAR 69
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINAL 127
S+ + + K +D+ R++ + D K + RRDFTIN++
Sbjct: 70 GF--GKSF----FVYKFKNYDLALARTENKISHGHKGFEVQICNDEKLGAKRRDFTINSM 123
Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ + +D+ GGL DL +++I ED LR+LR F + + K
Sbjct: 124 MINLFNDEFLDFYGGLKDLGAGFLRYI--DQQSFQEDSLRVLRAVVFASRFNLKITSESL 181
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ L + K + + + + +
Sbjct: 182 KLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQELGLEKQIFGFENIFKSL---EF 238
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ + F L + +K +++ + + N F
Sbjct: 239 QNSLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRT-------KLKKEYLKYANQAFYLN 291
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+S E+ K+ + K + + + ++ ++ +
Sbjct: 292 DISDFELAKIAFEMPLKEWLGLW-----------SKKRIEQAKRLRLYENKFESKIL--- 337
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
D + G GK +G L ++ +L ++ L
Sbjct: 338 AKDFIDAGF-CGKILGLKLQEARE-----------NELKEYIKGLAK 372
>gi|304315620|ref|YP_003850765.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302777122|gb|ADL67681.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 467
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 23/234 (9%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVIPT 73
+ I +L+ + +VGGA+RD ++N + D D + ++ K +P
Sbjct: 5 INRIKRILDDYSENVYVVGGAIRDRILNREINDYDFVVIGDAASISKLVSEKLGGTFVPY 64
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ GT K++ K D T + D + D RDFTINA+
Sbjct: 65 AEERGTYKVVYEKTMMDFT--------------QITGEDIEEDLGHRDFTINAMALRLND 110
Query: 134 KV-----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
ID GGL D++N+ I+ + + +D LR+LR RF + Y + I+ D
Sbjct: 111 FFDSNLIIDPFGGLYDIQNKKIRCVS--KNSFDDDPLRMLRAVRFASKY-KFAIEEDTKN 167
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ + +SSERI +EI +L++ I M G+ IF +++ +
Sbjct: 168 LIKEKANLISRISSERIMNEIYAILKSSESFKYIKMMDELGLIDSIFPEIKNMK 221
>gi|220932275|ref|YP_002509183.1| poly(A) polymerase/tRNA nucleotidyl transferase [Halothermothrix
orenii H 168]
gi|219993585|gb|ACL70188.1| poly(A) polymerase/tRNA nucleotidyl transferase [Halothermothrix
orenii H 168]
Length = 478
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 63/478 (13%), Positives = 129/478 (26%), Gaps = 92/478 (19%)
Query: 14 DLINILSLLNK-GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVI 71
++ +L ++ + + +VGGAVRD L+ +++D D V F SKT +
Sbjct: 14 QILPVLRDIHDRYQQELYLVGGAVRDILLQRNLKDFDFVLKERVREVALDFSSKTGGSFV 73
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY--- 128
P +++ +D + K D RRDFTIN++
Sbjct: 74 PLDRERDIYRVVADGYIYDFA--------------KMVGSTLKEDLSRRDFTINSMAVNV 119
Query: 129 --ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHR------------ILEDYLRILRFFRFF 174
+ + + I G ++D LR+LR FRF
Sbjct: 120 MDIPGNFGNKEPYLITEYINDYIIDPFGGWTDLEKGIIRVTDDKVFIKDPLRLLRAFRFK 179
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN------------------------ 210
+ G + + KI +
Sbjct: 180 SELGFLIEKDTENLIHRASPLIRKIARERIGYEFSRILSNPGVARVVKYAEDNFNLFSYV 239
Query: 211 -----------------KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
K I + + I D+L+ + A
Sbjct: 240 IPVIKRMKEKTLEEGSGKGWNLDAWNLGIRTLECLEDYISKGFYRDRIKDDRLACLKLAA 299
Query: 254 QVFEWKIDSLLRFIVLISWQDK----KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
F R + + + + + ++ R ++ + L
Sbjct: 300 FFFYIGNIKGSRMKSRAKYTPDRQGGRMVEKILLDLRMGKKCRRYVKQLICYHDYPYYLF 359
Query: 310 IPEIKKLFY--LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII----------H 357
+ + + ++ + L + ++ + I
Sbjct: 360 QKKKLQPLDKTRFWLELSGDGFDVCLLSLASFTGSNSEPVRIKAYREFINGLLLYGDRVK 419
Query: 358 WKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
L G+++ + + G +G +L K+ N +E + + L K I
Sbjct: 420 KLTTTPLLNGEEIRSCFNLEEGPVIGYLLKKLKEAQANGKVMTRKEAI-NYLEKYIKE 476
>gi|255718757|ref|XP_002555659.1| KLTH0G14432p [Lachancea thermotolerans]
gi|238937043|emb|CAR25222.1| KLTH0G14432p [Lachancea thermotolerans]
Length = 519
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 76/468 (16%), Positives = 146/468 (31%), Gaps = 84/468 (17%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVM----RIFSKT----RYKVIPTSI--- 75
+ I GG VRD L+ + D+DIA + +++ +
Sbjct: 49 ELRITGGWVRDKLLGFNSHDLDIAVNTMSGEQLALEINDFLRRNHESCGITPHSIHKIDK 108
Query: 76 -----SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ T D LRS+ T VV K D+LRRD T+NAL+
Sbjct: 109 NPEKSKHLETATTKLFGIDVDFVNLRSEEYTTESRIPVVAFGTPKQDALRRDATLNALFY 168
Query: 130 DQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSD 185
+ Q I+ G DL ++ L+D LR+LR RF + G
Sbjct: 169 NIQNDEIEDFTGTGLEDLNKGILRTPLPPLQTFLDDPLRVLRLIRFASRLGFVIDPDTYK 228
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV---------------------- 223
+ K +S ER+ E+ K+L+ NPL +
Sbjct: 229 AMQDPEINKAFGIKISRERVGVEMQKILQGPNPLLGLSFIQKAGLDNVIFSWHSDSAIIH 288
Query: 224 ------HMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF--EWKIDSLLRFIVLISWQ-- 273
M + E+ L++L ++EA + WK + + ++
Sbjct: 289 YNRENTDMSKAEKAYQELGRHIELVLEKLPVLLEAFPLLQEHWKNAPVFKQNFILGVIFA 348
Query: 274 DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF---------------- 317
+ I + L + S I K
Sbjct: 349 PFRGIKIVWNPQKLMNKETSISESIVKDGLKLGRNDAELIAKCVESHVEYNDMILRYESL 408
Query: 318 ----------YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL--SDIIHWKKPLFPL 365
GD + + + LA ++ + Q + ++ + +
Sbjct: 409 SRSDIGLEIRSFNGDWELAHLVNLALAYCFDENSLGQYQNFYQFVFDQNLQNSHALKPLI 468
Query: 366 TGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
G + + I PG+ +G ++ + +++ ++ + ++ ++
Sbjct: 469 DGKTLSKQLNIKPGRWMGGVVAEMVKWQMDNP-GSDEKQVLEFVQTIL 515
>gi|73670616|ref|YP_306631.1| tRNA nucleotidyltransferase [Methanosarcina barkeri str. Fusaro]
gi|72397778|gb|AAZ72051.1| tRNA nucleotidyltransferase [Methanosarcina barkeri str. Fusaro]
Length = 404
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 66/422 (15%), Positives = 126/422 (29%), Gaps = 60/422 (14%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVM 60
++ + K+ + I IVGGAVR LM + D+D + D
Sbjct: 1 MNKILTKF--RPHALKI----KDAGGTLYIVGGAVRRFLMCQTPHDVDFCVCGLTVDTFK 54
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV----VFTRDWKAD 116
+F R + + + + R++ Y + + D
Sbjct: 55 DLFPDARQQ----GNQFPVFVV----DDCEFAMARTEKKVCAGYNGFEINSDPSVTIEED 106
Query: 117 SLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRD TIN++ D +I + I ED +R++R RF
Sbjct: 107 LCRRDLTINSIAIDVITGMIVDPFNGAEDLINGIITP--TSDAFKEDPVRVIRAARFMCE 164
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
Y ++ + +K++S + +SE+ K+ + P + G F
Sbjct: 165 YPTFRASPTLIMYMLDLVHEIKLISDDHKFSELKKVFSSPKPSRYFNILNLGHALYITFP 224
Query: 237 DVQEI---------SLDQLSQVIEAEQVFEWKIDSLLRFIVLI----------------- 270
++ + D + D + +
Sbjct: 225 EIYSLIGIPQAHHSDGDAFEHTMRVLDDCRELTDDPVCLFAALTHDLGKATTPTEILPAH 284
Query: 271 SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-----KVM 325
+ +S+ + K +P E +YF F + K L + +
Sbjct: 285 HDHETRSVEIIDKIDWVPNEWKYFAKVFAADHMRGHRFREMRRGKRVSLLERIHKSNRGL 344
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385
K+ A T +D + + I ++GDD+ P G+ G +L
Sbjct: 345 EGFCKVLYADKPTPGTMRDIALMHATYAKIYS-------ISGDDL-PATTPKGEAFGKVL 396
Query: 386 VH 387
Sbjct: 397 HQ 398
>gi|170696055|ref|ZP_02887192.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia graminis C4D1M]
gi|170139047|gb|EDT07238.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia graminis C4D1M]
Length = 410
Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 66/349 (18%), Positives = 123/349 (35%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P++++ Y+ P + + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQMIA----QGYR--PVGKDF--PVFLHPQT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ + R++ T Y F + D RRD TINA+ + + VID
Sbjct: 55 HEEYALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KK 195
GG DL + + + LED +RILR RF A + + ++ + L K
Sbjct: 115 PFGGQRDLEAKLFRHV---SDAFLEDPVRILRIARFAARFADFSVAPETLALMRKMVADG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L +ER+W E+++ L K P + G I ++ + E
Sbjct: 172 EVDALVAERVWQEVSRGLMEKKPSRMFDVLRECGALARILPEIDALFGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ +L ++ + + + S+ +K
Sbjct: 232 TGVHVMMVLDHAAQQG----YALPVRFAALTHDLGKATTPEDILPRHLGHEGRSVDLLKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + N+ ++++L +KP
Sbjct: 288 LCERLRVPNECRDLALLVAREHGNIHRVMEMGAAALVRLLERSDAIRKP 336
>gi|167390862|ref|XP_001739538.1| poly(A) polymerase [Entamoeba dispar SAW760]
gi|165896812|gb|EDR24139.1| poly(A) polymerase, putative [Entamoeba dispar SAW760]
Length = 472
Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 76/439 (17%), Positives = 139/439 (31%), Gaps = 64/439 (14%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK----------TRYKVIPT---- 73
+VGG VRD L+ DIDI + + + K + +I
Sbjct: 33 IRVVGGWVRDKLLGKESHDIDITVDNMQSYQFSQYLQKYINEHTQHNVSGIGIIHKNHSA 92
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
T + DI LR+ D D+ RRDFTINA++
Sbjct: 93 GKHLETATLRIDNIAIDICCLRAADYCD---NDEEKIGTPLEDAQRRDFTINAMFYRVND 149
Query: 134 KVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
I+ + G +DL++ I+ + +D R LR RF G +
Sbjct: 150 DQIEDLTGCGLSDLKSGVIRTPISPKETLHDDPARALRAIRFSGKMGFVLDEELEQEMKT 209
Query: 192 KA--KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
K K LS ER+ E+ ++++ P I + G FK +F ++ EI+ + +
Sbjct: 210 KYIGDKMTTGLSRERLGRELIGMIQSDRPAYCIDQIRRFGYFKGLFGELDEITTTNVVRS 269
Query: 250 IEAE----------QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
E + + +LL + + K+ + + +
Sbjct: 270 YEMYAQEFGVFELGRREIGFLAALLYSVTRETNPKKRMAKVHSVIIDSLKLSVKERNNII 329
Query: 300 NCNFNQKTLSIPEIKKLFYL--------YGDKVMIAKLKIFLALH--------------- 336
+ K L KK + + + + A+H
Sbjct: 330 LVHNGVKELEQLSNKKEWTRVEVGRIVVASAEWWKEAICLCCAIHAPCDGVLVSPCDKGV 389
Query: 337 --YNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD----VVKYGIPPGKKVGNILVHCKQ 390
+ VL + + + + G++ + K G G + IL +
Sbjct: 390 MNKAMVQWCGLLLNRIVLEQLENIWQMKPLVNGEECSKILQKKG---GPWLKEILKDMVE 446
Query: 391 EWINSSFQLSQEDLHHLLR 409
I + E + +L+
Sbjct: 447 LQIENPMITKDEVVVFVLK 465
>gi|28275213|ref|NP_783470.1| tRNA nucleotidyl transferase [Shewanella oneidensis MR-1]
Length = 158
Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 16/156 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+NL ++D D + P+++ ++ + K P + K
Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDYMVVGATPEQMQQLGYRQVGKDFPVF--------LHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D LRRD TINA+ D++G + D G+
Sbjct: 54 TQQEYALARTERKVGLGYGGFSCYASPDVTLEQDLLRRDLTINAIAKDEEGNLYDPYQGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
D++ R ++ + ED LR+LR RF A +
Sbjct: 114 ADIKARQLRHV---SAAFSEDPLRVLRVARFAARFH 146
>gi|119943963|ref|YP_941643.1| fused tRNA nucleotidyl transferase and 2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Psychromonas ingrahamii 37]
gi|166233873|sp|A1SRC9|CCA_PSYIN RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|119862567|gb|ABM02044.1| metal dependent phosphohydrolase [Psychromonas ingrahamii 37]
Length = 409
Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 124/344 (36%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V+D D PD+++++ + K P I +
Sbjct: 2 QIFLVGGAVRDQLLQLKVKDRDYVVIAATPDKLLKLGFQQVGKDFPVFI--------HPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + D RRD TINA+ QG++ID GL
Sbjct: 54 TGDEYALARTERKKGSGHNGFECYAGLDVTLTEDLKRRDLTINAIAQSPQGELIDPYHGL 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
D++ +T++ I ED LR+LR RF A + + + S+ + L
Sbjct: 114 QDIQTKTLRHI---STAFSEDPLRVLRVARFAARFYDLGFKIAPETLDLMRSLSSSGELN 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E L+ NP + + G +F +++ + + E
Sbjct: 171 HLTAERVWQETANALKTNNPQIYFQVLRDCGALPLLFPEIEALFGVPAPKKWHPEIDTGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
++ V +S + + + I + +
Sbjct: 231 HTLMVVEQSVKLSDSLAFRFACLVHDLGKALTPKELW-PSHKGHGKLGLQLINNLCERLK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ + +A L + + ++ ++ W+KP
Sbjct: 290 IPNECRELACLVSEHHTLIHKGLELEADSLITLMDQNDAWRKPE 333
>gi|167579480|ref|ZP_02372354.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia thailandensis TXDOH]
Length = 413
Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 65/350 (18%), Positives = 119/350 (34%), Gaps = 31/350 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGA+RD+L+ L V+D D + P+R+ +K P + +
Sbjct: 2 KIYAVGGAIRDALLGLPVRDRDYVVVGATPERMAA----QGFK--PVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VI 136
+ R++ T Y F + D +RRD TINA+ + V+
Sbjct: 54 TREEYALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVV 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK- 195
D GG DLR + + +G A +ED +R+LR RF A + + + + +
Sbjct: 114 DPFGGQADLRAKLFRHVGGA---FVEDPVRVLRVARFAARFADFAVAPETSALMREMVDA 170
Query: 196 -GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W E+ + L P + G I ++ + E
Sbjct: 171 GEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALVRILPEIDALFGVPQRADYHPEV 230
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ ++ S+ + + + S+ +K
Sbjct: 231 DTGVHVMMVIDHAAKQG----YSLPVRFAALTHDLGKATTPADALPRHIGHEGRSVDLLK 286
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++ +KP
Sbjct: 287 PLCERLRVPNECRDLALVVAREHGNLHRVMGMGAAALVRLFERADALRKP 336
>gi|167617577|ref|ZP_02386208.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia thailandensis Bt4]
gi|257140555|ref|ZP_05588817.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia thailandensis E264]
Length = 413
Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 65/350 (18%), Positives = 119/350 (34%), Gaps = 31/350 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGA+RD+L+ L V+D D + P+R+ +K P + +
Sbjct: 2 KIYAVGGAIRDALLGLPVRDRDYVVVGATPERMAA----QGFK--PVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VI 136
+ R++ T Y F + D +RRD TINA+ + V+
Sbjct: 54 TREEYALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVV 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK- 195
D GG DLR + + +G A +ED +R+LR RF A + + + + +
Sbjct: 114 DPFGGQADLRAKLFRHVGGA---FVEDPVRVLRVARFAARFADFAVAPETSALMREMVDA 170
Query: 196 -GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W E+ + L P + G I ++ + E
Sbjct: 171 GEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALVRILPEIDALFGVPQRADYHPEV 230
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ ++ S+ + + + S+ +K
Sbjct: 231 DTGVHVMMVIDHAAKQG----YSLPVRFAALTHDLGKATTPADALPRHIGHEGRSVDLLK 286
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++ +KP
Sbjct: 287 PLCERLRVPNECRDLALVVAREHGNLHRVMGMGAAALVRLFERADALRKP 336
>gi|118594421|ref|ZP_01551768.1| tRNA nucleotidyl transferase, putative [Methylophilales bacterium
HTCC2181]
gi|118440199|gb|EAV46826.1| tRNA nucleotidyl transferase, putative [Methylophilales bacterium
HTCC2181]
Length = 378
Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 66/387 (17%), Positives = 135/387 (34%), Gaps = 46/387 (11%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRDSL+N+ +D D + P+ ++ P + + K
Sbjct: 2 KIYLVGGAVRDSLLNIPFKDKDYLVVGATPEIMV------NLGFKPIGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + F + D RRD TINA+ D +G ID G+
Sbjct: 54 SNEEYALARTEKKIAAGHKGFNFYASPDVSIEEDLKRRDITINAIAQDSEGNYIDPYDGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKIL 200
+D+ + I+ + ED LR+LR RF A I + ++ + ++ L
Sbjct: 114 SDIGKKIIRHV---SPSFQEDPLRVLRVARFKAKLPSFVIYDETMMLMKRMVADGEVECL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ-LSQVIEAEQVFEWK 259
SSER+ +E+ K L+ K+ + + + IF D+ ++ + ++ + +
Sbjct: 171 SSERVTAELMKGLDQKDAFSMLEVLDECAALPIIFPDISFKKHNRAVKKLFDLANEAQVS 230
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
L + + + ++ R ++ + F+
Sbjct: 231 NSKRL-----LLFLLAVNFEDNLINPTIEVNTRIIKLTAEINKIIVLLQKYSDKLINFFT 285
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379
+ + L +F F + I L G D+ + G+
Sbjct: 286 LNVESQLDLLGVF-------------DFFRRPHRVIECIDLISLVLQGRDLSNVLLLEGR 332
Query: 380 KVGNILVHCKQEWIN---SSFQLSQED 403
+ + + + + ++
Sbjct: 333 SL------ILEYQADLLHNKITVDKDQ 353
>gi|73619835|sp|Q8Y395|CCA_RALSO RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|17427093|emb|CAD13613.1| probable multifunctional cca protein [includes: cca-adding enzyme
(trna nucleotidyltransferase) (trna
adenylyl-/cytidylyl-transferase) (trna
cca-pyrophosphorylase) (trna-nt); 2'-nucleotidase ;
2',3'-cyclic phosphodiesterase ; phosphatase ]
[Ralstonia solanacearum GMI1000]
Length = 429
Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 65/354 (18%), Positives = 119/354 (33%), Gaps = 31/354 (8%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
VGGA+RD+L+ L VQD D + P+ + +T K P +
Sbjct: 18 HGLDVYAVGGAIRDTLLGLPVQDRDYVVVGATPEAMEARGFRTVGKDFPVF--------L 69
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK----- 134
+ + R++ T Y + D +RRD TINA+
Sbjct: 70 HPRTQAEYALARTERKTAAGYKGFSVYYAPDVTLEDDLVRRDLTINAMAQRVAEDGALVG 129
Query: 135 -VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
VID GG DL +RT + + +ED +RILR RF A + E ++ + +
Sbjct: 130 PVIDPYGGQADLASRTFRHV---SEAFVEDPVRILRVARFAARFAEFHVAPETRALMQRM 186
Query: 194 KK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + L ER+W E+ + L P + + G + ++ +
Sbjct: 187 AEAGEVDALVPERVWQELARGLLEARPSRLFAVLRDCGALVRLLPELDRLWGVPQRADYH 246
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E ++ + ++ + + +P
Sbjct: 247 PEVDTGVHTMMVVDTAAAMDTPLPVRFAALVHDLGKG----TTPADILPRHVGHEARGLP 302
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362
I+ + L I +A + N+ D ++++L +KP
Sbjct: 303 MIEDICRRLRVPTDCRDLAIMVAREHGNIHRSDGFDATALVRLLERCDALRKPE 356
>gi|323527658|ref|YP_004229811.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia sp. CCGE1001]
gi|323384660|gb|ADX56751.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia sp. CCGE1001]
Length = 410
Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 63/346 (18%), Positives = 117/346 (33%), Gaps = 25/346 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P++++ Y+ P + + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQMIA----QGYR--PVGKDF--PVFLHPET 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALY--ADQQGKVIDYVGG 141
+ + R++ T Y F + D RRD TINA+ G++ V
Sbjct: 55 HEEYALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVVD 114
Query: 142 -LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLK 198
R+ K LED +RILR RF A + + + + L K +
Sbjct: 115 PFGGQRDLQAKLFRHVSDAFLEDPVRILRIARFAARFADFTVAPETLALMRKMVADGEVD 174
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L +ER+W E+++ L K P + G I ++ + E
Sbjct: 175 ALVAERVWQEVSRGLMEKKPSRMFAVLRECGALARILPEIDALFGVPQRADYHPEVDTGV 234
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ +L ++ + + + S+ +K L
Sbjct: 235 HVMMVLDHAAQQG----YALPVRFAALTHDLGKATTPADILPRHLGHEGRSVDLLKPLCE 290
Query: 319 LYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L + +A + N+ ++++L +KP
Sbjct: 291 RLRVPNDCRDLALLVAREHGNIHRVMEMGAAALVRLLERGDAIRKP 336
>gi|33519542|ref|NP_878374.1| tRNA CCA-pyrophosphorylase [Candidatus Blochmannia floridanus]
gi|73619763|sp|Q7U350|CCA_BLOFL RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|33517205|emb|CAD83587.1| tRNA nucleotidyltransferase [Candidatus Blochmannia floridanus]
Length = 411
Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 69/340 (20%), Positives = 120/340 (35%), Gaps = 20/340 (5%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRDSL+NL + + D T ++ I + K P + K +
Sbjct: 4 YLVGGAVRDSLLNLPITEKDWVITGSSAQEMLSIGYEQVGKDFPVF--------LHPKSH 55
Query: 89 FDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ Y + + D RRD TINA+ D G ++D G D
Sbjct: 56 EEYALARTERKLGSGYTGFICHTEPSITIEEDLYRRDLTINAMAYDMNGNLLDPYNGQKD 115
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSS 202
+ ++ + + ED LR+LR RF A I + LK LS
Sbjct: 116 I---QLRLLRHVSNAFYEDPLRVLRVARFAAKLKNIGFTIAIETFEIMTHMIHELKSLSP 172
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFEWKID 261
ER+W E K L NP + G K +F ++ + ++ Q + +
Sbjct: 173 ERVWMETKKALITDNPQVYFQVLKKCGALKILFPELDILFTIPQCTTHHSNLMNLGNQTM 232
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+ L I +S + R + Q ++ +L
Sbjct: 233 TRLSNISCLSNDLAIRYAILCCNLGSEMNPRKQPLKQLTQKKPQISIINNLCNRLKVPNN 292
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + ++ Y ++T + I+ + W+ P
Sbjct: 293 ILKLTKIVFMYYHDLY-DVTKLSSEMIMTIFQAFDCWRTP 331
>gi|307104614|gb|EFN52867.1| hypothetical protein CHLNCDRAFT_58740 [Chlorella variabilis]
Length = 911
Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 25/188 (13%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
+LS L ++ +VGG +RD L+ + +D D+ TT ++ R+F +
Sbjct: 271 SRPAWLVLSRLRAAGHEAYVVGGTIRDLLLGGTPKDYDLLTTAELHQIKRLFGRCNI--- 327
Query: 72 PTSISYGTIKIICRKKYFDITTL-----------RSDLITDGRYAKVVFTRDW------- 113
S+ ++ ++++ + GR R
Sbjct: 328 -VGRSFPVCQVHAEGTMIEVSSFTTNADLRLIPADASTHMIGRQKPKRVARQEAGATWAA 386
Query: 114 --KADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170
++ RRDFT+N L D + + D VGG+ D + R ++ I D RILR
Sbjct: 387 ARADNAARRDFTVNGLLYDPFSRLLFDSVGGVADCQARRLRTICPPQQSFAADPARILRG 446
Query: 171 FRFFAHYG 178
R A G
Sbjct: 447 VRLAARAG 454
>gi|320326002|gb|EFW82060.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas syringae pv. glycinea str. B076]
Length = 409
Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 77/413 (18%), Positives = 133/413 (32%), Gaps = 59/413 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLVK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARILRHV---SPAFAEDPLRVLRVARFAARYARYGFTIAPETLGLMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L++ER W EI++ L + P I +++ G KE+ +V+ + E
Sbjct: 172 LTAERSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ S+L + + + + I + + F +
Sbjct: 232 VLSVLEQSAIHKHPLTVRWACLLHDLGKGLTPEAEWPRHIA-HEHTGLRLIKAVNERFRV 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369
+ +A L H + +L++L +++P G
Sbjct: 291 PRECQELALLVGQYHTHGHRALELKPATLLELLQSFDVYRRPQRFEEFIAACEMDARGRH 350
Query: 370 ---------------------------VVKYGIPPGKKVGNILV--HCKQEWI 393
+++ G GK++G+ L K I
Sbjct: 351 GFEQRSYPQADYLRGAAQAARTVSVQPLLEKGFK-GKELGDALKNERLKALKI 402
>gi|37522493|ref|NP_925870.1| polyA polymerase [Gloeobacter violaceus PCC 7421]
gi|35213494|dbj|BAC90865.1| polyA polymerase [Gloeobacter violaceus PCC 7421]
Length = 477
Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 61/456 (13%), Positives = 134/456 (29%), Gaps = 90/456 (19%)
Query: 31 IVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKK 87
+VGG+VRD+L+N + D+D R+ ++ + ++++
Sbjct: 38 LVGGSVRDALLNRTRVPLDLDFVCPGPVAERARVLARRLGAGFAVLDAEHEIVRLVLDSG 97
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
R D +D RRD+T+NA+ D +
Sbjct: 98 ITLDFARR-------------QGADLVSDLARRDYTVNAIAWDVHAGELFDPFDGRGDLT 144
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
R +++D LR+LR +R A I+ L +S+ER+
Sbjct: 145 RRTLRA-ICEANLVDDPLRLLRGYRLAAQLDF-AIEPATRAWIGLHAHRLAAVSAERVRE 202
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---QEISLDQLSQVIEAEQVFE------- 257
E+ L+ A +A++ Y G+ + ++ + I + E FE
Sbjct: 203 ELCALICAPTGADALLATYRDGLLADWLPEIAPMEAIGPSGYHHLPLIEHTFEVIRQVDG 262
Query: 258 --------------------WKIDSLLRFIVLISW-----------------------QD 274
+ +L++ L+
Sbjct: 263 AIADFAEQVRADMDRQVTGGHSVRTLVKLGALLHDIAKPPTSKLDPASGRMSFIGHESLG 322
Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI--KKLFYLYGDKVMIAKLKIF 332
+ ++ R+ ++ + + L+ + Y + +
Sbjct: 323 ANMTRQILQRLKFSRDEERWVAALVQHHLRPGQLAAHWPPSNRAVYRLCRDLGQMLPALL 382
Query: 333 LALHYNNLTHQDT---------------CFILQVLSDIIHWKKPLFPLTGDDVV-KYGIP 376
+ + + + + P + G+ ++ + +
Sbjct: 383 MLALADRRSTLGPQVGQDDLARAVELTGRLLGHYYTPGDPLAHPRTLIDGNGLMAELDLK 442
Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
PG +VG +L ++ +E L L R L+
Sbjct: 443 PGPRVGQLLAAIQEAQATGEVTGREEAL-ALARTLL 477
>gi|330980971|gb|EGH79074.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 409
Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 76/404 (18%), Positives = 131/404 (32%), Gaps = 57/404 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLIK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARILRHV---SPAFAEDPLRVLRVARFAARYAGYGFTIAPETLGLMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L++ER W EI++ L + P I +++ G KE+ +V+ + E
Sbjct: 172 LTAERSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ S+L + + + I + + F +
Sbjct: 232 VLSVLEQSARHKHPLTVRWACLLHDLGKGLTPEAEWPRHIA-HEHTGLRLIKAVNERFRV 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369
D +A L H + +L++L +++P G
Sbjct: 291 PRDCQELALLVGQYHTHGHRALELKPSTLLELLQSFDVYRRPQRFEEFIAACEMDARGRH 350
Query: 370 ---------------------------VVKYGIPPGKKVGNILV 386
+++ G+ GK++G+ L
Sbjct: 351 GFEQRSYPQADYLRAAAEVARAVSVQPLLEQGLK-GKELGDALK 393
>gi|71733413|ref|YP_272925.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas syringae pv. phaseolicola 1448A]
gi|289627695|ref|ZP_06460649.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas syringae pv. aesculi str. NCPPB3681]
gi|289649014|ref|ZP_06480357.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas syringae pv. aesculi str. 2250]
gi|123638353|sp|Q48NU4|CCA_PSE14 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|71553966|gb|AAZ33177.1| tRNA nucleotidyltransferase [Pseudomonas syringae pv. phaseolicola
1448A]
gi|320332063|gb|EFW87999.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas syringae pv. glycinea str. race 4]
gi|330868484|gb|EGH03193.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae
pv. aesculi str. 0893_23]
Length = 409
Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 77/413 (18%), Positives = 133/413 (32%), Gaps = 59/413 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLVK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARILRHV---SPAFAEDPLRVLRVARFAARYARYGFTIAPETLGLMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L++ER W EI++ L + P I +++ G KE+ +V+ + E
Sbjct: 172 LTAERSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ S+L + + + + I + + F +
Sbjct: 232 VLSVLEQSAIHKHPLTVRWACLLHDLGKGLTPEAEWPRHIA-HEHTGLRLIKAVNERFRV 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369
+ +A L H + +L++L +++P G
Sbjct: 291 PRECQELALLVGQYHTHGHRALELKPSTLLELLQSFDVYRRPQRFEEFIAACEMDARGRH 350
Query: 370 ---------------------------VVKYGIPPGKKVGNILV--HCKQEWI 393
+++ G GK++G+ L K I
Sbjct: 351 GFEQRSYPQADYLRGAAQAARTVSVQPLLEKGFK-GKELGDALKNERLKALKI 402
>gi|299068341|emb|CBJ39565.1| tRNA nucleotidyl transferase [Ralstonia solanacearum CMR15]
Length = 429
Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 65/354 (18%), Positives = 119/354 (33%), Gaps = 31/354 (8%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
VGGA+RD+L+ L VQD D + P+ + +T K P +
Sbjct: 18 HGLDVYAVGGAIRDTLLGLPVQDRDYVVVGATPEAMEARGFRTVGKDFPVF--------L 69
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK----- 134
+ + R++ T Y + D +RRD TINA+
Sbjct: 70 HPRTQAEYALARTERKTAAGYKGFSVYYAPDVTLEDDLIRRDLTINAMAQRVAEDGALVG 129
Query: 135 -VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
VID GG DL +RT + + +ED +RILR RF A + E ++ + +
Sbjct: 130 PVIDPYGGQADLASRTFRHV---SGAFVEDPVRILRVARFAARFAEFHVAPETNALMQRM 186
Query: 194 KK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + L ER+W E+ + L P + + G + ++ +
Sbjct: 187 AEAGEVDALVPERVWQELARGLLEARPSRLFAVLRDCGALARLLPELDRLWGVPQRADYH 246
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E ++ + ++ + + +P
Sbjct: 247 PEVDTGVHTMMVVDTAAAMDTPLPVRFAALVHDLGKG----TTPADILPRHVGHEARGVP 302
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362
I+ + L I +A + N+ D ++++L +KP
Sbjct: 303 MIEDICRRLRVPTDCRDLAIMVAREHGNIHRSDGFDATALVRLLERCDALRKPE 356
>gi|332295589|ref|YP_004437512.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermodesulfobium narugense DSM 14796]
gi|332178692|gb|AEE14381.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermodesulfobium narugense DSM 14796]
Length = 468
Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 62/459 (13%), Positives = 132/459 (28%), Gaps = 63/459 (13%)
Query: 15 LINILSLLNKGEDK-SCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYK--V 70
L I LL+ + +VGGAVRD L+ + D D + + ++ +
Sbjct: 2 LNKIHILLDNNAYEDVFLVGGAVRDLLIGKEISDYDFLVSEGSVSDIAKLLASNLGGKFF 61
Query: 71 IPTSISY--GTIKIICRKKYFDI----------TTLRSDLITDGRYAKVVFTRDWKADSL 118
+Y TI+I+ DI L D + ++ + +
Sbjct: 62 FLKGANYSSKTIRILKEGLQIDISEPKGSNLQEDLLERDFTINSMAIRMSDGALFDSAEG 121
Query: 119 RRDF-------TINALYADQQGKVIDYVGGLNDLRNRTIKFIGD------------AHHR 159
RD T + + ++I + ++ + + G R
Sbjct: 122 IRDLINKRIRLTSDLAFIKDPVRLIRAYRFVAEMNFQLDERTGILIMEQAPLISQVPSER 181
Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219
+ ++ +IL + + K+ + + + +N L + L
Sbjct: 182 VRDEIFKILNLKNSADVLYNLWKAGILKIIFPELTLLEKVSAEPQRFHHLNGLEHSFEAL 241
Query: 220 NAIVH---------------MYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264
+ + + L + + + + K+DS
Sbjct: 242 RCLERILLFKSPIWHDISEKLTHYLNHIIGGGRKNLQLLKLATLLHDVGKPITMKLDSNK 301
Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF------- 317
+ + + +A++ L + L + + +
Sbjct: 302 TSFLNHDQEGSIIVEKIARRMRLSKSEIKELKHLVKNHMQPIFIPPENSEAHILKFLSRT 361
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK-----KPLFPLTGDDVVK 372
Y Y + + L L+ +T ++ II PL G +++K
Sbjct: 362 YPYTVNITLLSLADRLSSRGQKITLSYILERYRLYKKIIKTSLYYEPPKKLPLNGKEIMK 421
Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ PG VG L K I + ++ LL K
Sbjct: 422 LLNLEPGPTVGIALKMLKGAMIRGEVKDEEDAKAFLLEK 460
>gi|167469895|ref|ZP_02334599.1| poly(A) polymerase [Yersinia pestis FV-1]
Length = 399
Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 60/344 (17%), Positives = 121/344 (35%), Gaps = 29/344 (8%)
Query: 37 RDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRS 96
RD L+ +D D ++ P++V ++F R + ++ + ++ T R
Sbjct: 1 RDLLLGRKPKDFDTISSATPEQVRKLFRICRL----VGRRFRLAHVMFGPEIIEVATFRG 56
Query: 97 DLITD---------------GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVG 140
G + + D+ RRDFTIN+LY + DY G
Sbjct: 57 HHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQRRDFTINSLYYGISDFALRDYTG 116
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200
GL DL+ I+ IGD R ED +R+LR RF A +I + + L+ +
Sbjct: 117 GLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKLDM-SISPETAEPIPRLASLLREI 175
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-------DVQEISLDQLSQVIEAE 253
R++ E KLL++ + + +F+ +F + + ++++ +
Sbjct: 176 PPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARNFTEQHDSPMERILVQVLKN 235
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF-NQKTLSIPE 312
D + L + ++ A+K + + Y+ N +
Sbjct: 236 TDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQESGLAYYDAFALAMNDVLDEECRSLA 295
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
I K + + +L++ + ++
Sbjct: 296 IPKRITSLVRDIWLLQLRLSRRQGKRAHKLMEHPKFRAAYDLLL 339
>gi|330982609|gb|EGH80712.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 342
Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 70/343 (20%), Positives = 118/343 (34%), Gaps = 19/343 (5%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLIK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF A Y + + LK
Sbjct: 115 DLEARILRHV---SPAFAEDPLRVLRVARFAARYAGYGFTIAPETLGLMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L++ER W EI++ L + P I +++ G KE+ +V+ + E
Sbjct: 172 LTAERSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ S+L + + + I + + F +
Sbjct: 232 VLSVLEQSARHKHPLTVRWACLLHDLGKGLTPEAEWPRHIA-HEHTGLRLIKAVNERFRV 290
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
D +A L H + +L++L +++P
Sbjct: 291 PRDCQELALLVGQYHTHGHRALELKPSTLLELLQSFDVYRRPQ 333
>gi|148653075|ref|YP_001280168.1| tRNA cytidylyltransferase [Psychrobacter sp. PRwf-1]
gi|148572159|gb|ABQ94218.1| tRNA cytidylyltransferase [Psychrobacter sp. PRwf-1]
Length = 413
Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 55/291 (18%), Positives = 109/291 (37%), Gaps = 35/291 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ IVGGAVRD L+N D D P++++ I + + K
Sbjct: 2 QVYIVGGAVRDELLNRPYTDKDFVVVGATPEQMIEA------GFIQVGADF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQG--------- 133
+ R++ + Y + D LRRD TINA+ + +
Sbjct: 54 TKEEYALARTERKSGKGYKGFEVYASPEVTIEEDLLRRDLTINAMAIEVKSLWDSTPLTG 113
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI-- 191
+VID G +D++N+ ++ + ED LR+LR RF+ + + + + +A
Sbjct: 114 EVIDPYDGQSDIKNKMLRHV---SEAFSEDPLRVLRIARFYGRFYDPKAEHNFSIAPDTL 170
Query: 192 ------KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-QEISLD 244
L L++ER+W E ++ L P + + G IF + + D
Sbjct: 171 ALIATINDSDELACLTAERVWQETSRALMQDCPYAYLDCLQYMGALPHIFPSIANALGDD 230
Query: 245 QLSQVIEAEQVFEWKIDSLLRF-IVLISWQDKKSILSMAKKFSLPREIRYF 294
++ ++ +++ L+ +I + ++ + +
Sbjct: 231 KIKALVFQALQLAGQLNLSLQQRWAIIMLSLAQEVIDVLNPRHHSNHHPHQ 281
>gi|123965404|ref|YP_001010485.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT
9515]
gi|123199770|gb|ABM71378.1| Poly A polymerase family [Prochlorococcus marinus str. MIT 9515]
Length = 415
Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 66/379 (17%), Positives = 121/379 (31%), Gaps = 29/379 (7%)
Query: 30 CIVGGAVRDSLMNLSVQ--DIDIATTILPDRV-MRIFSKTRYKVIPTSISYGTIKIICRK 86
+VGG +RD ++ D+DI ++ +I K K I + +++I +
Sbjct: 47 YLVGGYIRDLILGRLNSLIDVDIVVPKNAIKIGKKIADKFEGKFIILDEARDVVRLIFKH 106
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146
DI + + + D RDF+INA+ K++
Sbjct: 107 VSVDIAS--------------QISPSIEIDLFSRDFSINAIAFSFDKKLLIDPSNGIKDL 152
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
++ +LED LRILR FRF + + V K I S +
Sbjct: 153 QLSLLRTHS-KQNLLEDPLRILRCFRFVSELNFNVDVNLINVIKTCKNKLSLIASERINY 211
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
I +++ AI + IF + + I +D EA E L F
Sbjct: 212 E-IQRIIIGSEAAYAIKLINKFKIFDYLQSEKNLIFIDLQKINFEAFSKIEKDKFFPLFF 270
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ I K + + N K +I E+ + + +
Sbjct: 271 LSQILD------EFSLKILKFRKSEIAKIRLLRKWNLLLKRKTIYELDERERFNLHQELE 324
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385
L F+ + ++ + + P + G + K I G +G ++
Sbjct: 325 NILPSFILFLQESF---YIDWLERWRNKDDKLFHPSNLIKGTVLKKYLKIQEGPVLGKVM 381
Query: 386 VHCKQEWINSSFQLSQEDL 404
+ E + E +
Sbjct: 382 NYLSMELAFNRLNNFDEAI 400
>gi|218562417|ref|YP_002344196.1| putative multifunctional Cca protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|112360123|emb|CAL34917.1| putative multifunctional Cca protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|284926035|gb|ADC28387.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni
IA3902]
Length = 372
Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 68/407 (16%), Positives = 137/407 (33%), Gaps = 48/407 (11%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYK 69
++ DL I L ++ +VGG+VRD + L + D DI I P +I K +
Sbjct: 10 NNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKLGAQ 69
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINAL 127
S+ + + K +D+ R++ + D K + RRDFTIN++
Sbjct: 70 GF--GKSF----FVYKFKNYDLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSM 123
Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ + +D+ GGL DL ++ ED LR+LR F + + K
Sbjct: 124 MINLFNDEFLDFYGGLKDLGVGFLR--HIDKQSFQEDSLRVLRAVVFASRFNFKITSESL 181
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ L E+ K ++ ++ G+ K++F +
Sbjct: 182 KLMQSMDITDLSKDRINA---ELCKFFKSPRLDVGYRYLQELGLEKQVFGFESVFKSSEF 238
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + F L + +K +++ + + N F
Sbjct: 239 QNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRT-------KLKKEYLKYANQAFYLD 291
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+S E+ K+ + K + + + ++ ++ +
Sbjct: 292 DISDFELAKIAFEMPLKEWLGLW-----------SKKRIEQAKRLGLYENKFESKIL--- 337
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
D + G GK +G L ++ +L ++ L
Sbjct: 338 AKDFINAGF-CGKILGLKLQEARE-----------NELKEYIKGLAK 372
>gi|262368647|ref|ZP_06061976.1| tRNA nucleotidyl transferase [Acinetobacter johnsonii SH046]
gi|262316325|gb|EEY97363.1| tRNA nucleotidyl transferase [Acinetobacter johnsonii SH046]
Length = 407
Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 54/344 (15%), Positives = 114/344 (33%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + D + P++++ P + + +
Sbjct: 2 QVYLVGGAVRDQLLGHPYHEKDYVVVGATPEQLLA------QGFQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLIT-DGRYAKVVFTR---DWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + G + +T + D +RRD TINA+ D +G + D GG
Sbjct: 54 TKDEYALARTERKSGQGYHGFEFYTDSTVTLEQDLIRRDLTINAIAMDDEGTLYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL ++ + +ED LR+LR RF A Y ++ +
Sbjct: 114 RDL---ELRVLRHVSDAFVEDPLRVLRVARFAARYKTLGFSVAEETLALMQQLADSGELE 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ ER+W E ++ L + + G K +F ++ + E
Sbjct: 171 ALTPERVWKETSRALMEDHADEYFEVLRRCGALKVLFPEIAALYGIPQRPEYHPEIDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
L+ + ++ + + + + E+ +
Sbjct: 231 HTMMSLQ-QACRANYALDVRFAVLVHDLGKALTPVDELPRHIMHEERGVKPVTEVCERLK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + ++L + ++P
Sbjct: 290 VPTQMKQLAITVCKEHLKCHQALTLKPGTLWRLLQRLDVLRRPE 333
>gi|169351517|ref|ZP_02868455.1| hypothetical protein CLOSPI_02297 [Clostridium spiroforme DSM 1552]
gi|169291739|gb|EDS73872.1| hypothetical protein CLOSPI_02297 [Clostridium spiroforme DSM 1552]
Length = 451
Score = 90.3 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 73/444 (16%), Positives = 145/444 (32%), Gaps = 54/444 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLM--NLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
I + ++ +VGG VRD LM ++ D+D+ L + K V
Sbjct: 11 ANKIFEDIYNQNGRAFLVGGIVRDMLMYGHVDYHDVDVEVYGLSIEQLENILKKYGNVNC 70
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALY 128
S+G +K+ +D R+++ R+ D K +LRRD T+NAL
Sbjct: 71 IGKSFGILKLDV-LANYDFALPRTEIKIGNRHQDFKVEVNKDLDLKTAALRRDLTVNALM 129
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ + I G + N+ + ED LR+LR +F + + +
Sbjct: 130 YEVKTGKIYDFYGGIEDLNKRTLRM-VDKKTFEEDPLRVLRVAQFASRFEFFVEAKTKNI 188
Query: 189 ASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI------------- 234
KKG+ LS+ER++ E NKLL + P + + +
Sbjct: 189 CKEMVKKGMLKYLSNERVFQEYNKLLLSNRPSIGLSFLKDIKALYPCLDVLSSTKQRLDY 248
Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI---------------- 278
+ L + A + + L+ K +
Sbjct: 249 HPEGDVWKHTLLVTDLAALCRHKTAYPLGFMWGALLHDIGKPVVTTKEGHAPKHNEAGVK 308
Query: 279 --LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
K + ++++ ++ + + + + K YL K + +KI +
Sbjct: 309 VFDEQLKSLIVDKKLQKYIKTIIYYHMHLMNMVRNGAKDYSYLRILKGIDGIVKIEDLIL 368
Query: 337 YNNLTH----QDTCFILQVLSDIIHWKKPLF-------PLTGDDVVKYGIPPGKKVGNIL 385
+D + I+ K + G+D+ K GI + +L
Sbjct: 369 ITKCDKLGRYKDEHESINHFDSIMKEKMFKLGTSCKKAIVGGNDLKKLGIKQTSRYKELL 428
Query: 386 VHCKQEWINSSFQLSQEDLHHLLR 409
+ + + + +++
Sbjct: 429 EYAYDLQLRGH---DKASILKMIK 449
>gi|113954933|ref|YP_731793.1| polyA polymerase [Synechococcus sp. CC9311]
gi|113882284|gb|ABI47242.1| polyA polymerase family protein [Synechococcus sp. CC9311]
Length = 386
Score = 90.3 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 66/381 (17%), Positives = 133/381 (34%), Gaps = 37/381 (9%)
Query: 31 IVGGAVRDSLMNLSVQ--DIDIATTILP-DRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD L+N + D+D+ +V ++ + + +++ +
Sbjct: 27 LVGGAVRDGLLNRLPEHPDLDMVVPADALGQVRKLSQEFGGSCVVLDRDRDMARLVLGRW 86
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD--QQGKVIDYVGGLNDL 145
D+ AD +RRD+ INA+ + K++D GG+ DL
Sbjct: 87 TIDLA--------------RQEGDALTADLMRRDYRINAIALTLTTEPKLVDPSGGIPDL 132
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
R++ I I + + D L + ID L + + L ++ ERI
Sbjct: 133 RDQRITAIHEQNL---LDDPLRLLRAIRLSSELSMTIDQGTLEMIARHRHQLPKVAPERI 189
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265
+E+ KL++A N AI +++ + + + + + + EQ + L +
Sbjct: 190 QAELLKLVQANNADQAIHLLHSLKLIAPWSSNQPQKTFNA-RALTAEEQQLALPLARLTQ 248
Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
+ D R+ + + S + + L + +
Sbjct: 249 LLSDQGVND----------LRFSRKQIQRCLRLRAWWKRDQQQSASTLSERERLKLHEEL 298
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNI 384
L F + ++ + P PL G + + G+ PG ++G +
Sbjct: 299 EEDLPAFTL---AWPVERQNEWLRRWRDQDDMLFHPCTPLNGRTLQAELGLRPGPRLGEL 355
Query: 385 LVHCKQEWINSSFQLSQEDLH 405
+ H E + E +
Sbjct: 356 IQHLCLERAFGRIRSQDEAIQ 376
>gi|325282687|ref|YP_004255228.1| Polynucleotide adenylyltransferase region [Deinococcus
proteolyticus MRP]
gi|324314496|gb|ADY25611.1| Polynucleotide adenylyltransferase region [Deinococcus
proteolyticus MRP]
Length = 384
Score = 90.3 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 62/382 (16%), Positives = 115/382 (30%), Gaps = 63/382 (16%)
Query: 31 IVGGAVRDSLMN--LSVQDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+VGGAVRD+L+ L D+DI + + +S + +
Sbjct: 38 LVGGAVRDALLGASLHSPDLDIVLDTSGGLTVGELAARYSARTGLPHLFHPQFQNAALTL 97
Query: 85 -RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD--QQGKVIDYVGG 141
+ D+ R + V T D RRDF +NAL +++D VGG
Sbjct: 98 PDGRSADLIRARRERYPVPGERPTVTTGTLAEDLARRDFGLNALALRLADPPELLDVVGG 157
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
L+DL RT++ + + ED R++R R A
Sbjct: 158 LDDLHARTLRPLHAH--SLHEDASRLIRGARLAARLDLHAHPELLRQVPDA---LQMAER 212
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ R+W+E+ L +P + G + + + L + E D
Sbjct: 213 TPRLWAELGLALHEPHPTKVARMLTGWGAGEVLPPGL-------LPTWQQLEAAGAGNPD 265
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
L L+ + +
Sbjct: 266 --LYAAALLHTAEHPQLWQERLSLGHG--------------------------------- 290
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381
++ ++ ++ Q+ + + + PL G D+++ G G ++
Sbjct: 291 ------PARLLARAESADIFPAESAE-QQLRTALWPERPAYPPLQGRDLLQAGWTAGPQL 343
Query: 382 GNILVHCKQEWINSSFQLSQED 403
G L H + E+
Sbjct: 344 GQALAHLRTRRARGELHSRAEE 365
>gi|19075619|ref|NP_588119.1| ATP(CTP) tRNA nucleotidyltransferase (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74665823|sp|Q9Y7U9|CCA2_SCHPO RecName: Full=Putative CCA tRNA nucleotidyltransferase 2; AltName:
Full=CCA-adding enzyme 2; AltName: Full=tRNA
CCA-pyrophosphorylase 2; AltName: Full=tRNA
adenylyltransferase 2; AltName: Full=tRNA
nucleotidyltransferase 2
gi|4539282|emb|CAB39906.1| ATP(CTP) tRNA nucleotidyltransferase (predicted)
[Schizosaccharomyces pombe]
Length = 484
Score = 90.3 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 77/449 (17%), Positives = 144/449 (32%), Gaps = 65/449 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMR-IFSKT----------------RYK 69
+ + GG VRD L+ LS D+D+ + IF +
Sbjct: 36 EVRLAGGWVRDKLLGLSSDDLDVTLNKVTGVDFANSIFEYVHSLDSDSVIPYKDALGKLT 95
Query: 70 VIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
V P + T + D LR++ D V + D+LRRDFT+N L+
Sbjct: 96 VNPDQSKHLETATLSLFDLDIDFVGLRAESYDDKSRIPSVTPGTVETDALRRDFTVNTLF 155
Query: 129 ADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD- 185
+ + + I+ + G DL+ + + LED LRILR RF + + S
Sbjct: 156 FNIRTEKIEDITKRGYKDLQTKVLVTPISPLQSFLEDPLRILRGIRFASRFEFTIDPSVV 215
Query: 186 -GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ K K +S ER+ EI K+L+ N A+ +Y+ ++ F +
Sbjct: 216 SAIQDPKVCKAFEKKVSKERVGEEIEKMLKGANAKLALQLLYSTNTYQFTFDTLPAEKEF 275
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF----- 299
Q+ + +EA + + ++ +S +K + + F
Sbjct: 276 QIPKALEATESLFQSLALTFPKLMKLSEDEKIGLWLYVALIPWSSQTVMVKKKQFYIPAI 335
Query: 300 ----NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF-------- 347
++ F D+++ + + + + +
Sbjct: 336 IAKDKLKLRSTYVNQLNQCCTFNPIFDELVNDTSTKNCSSIGSLIRQLNKSWEVVFLTSV 395
Query: 348 ------------------ILQVLSDIIHWK-----KPLFPLTGDDVVKY-GIPPGKKVGN 383
+ I L G ++K G+ PG ++
Sbjct: 396 IYSCCKTPAASVSNTFSSYKSLYDFIYDKNLQNAYNMKPLLDGKQIMKNVGVKPGPQLKE 455
Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ + + S ED L+ L
Sbjct: 456 TMDNMISWQFKHP-EGSVEDCVAYLQSLK 483
>gi|148926957|ref|ZP_01810634.1| putative RNA nucleotidyltransferase [Campylobacter jejuni subsp.
jejuni CG8486]
gi|145845041|gb|EDK22138.1| putative RNA nucleotidyltransferase [Campylobacter jejuni subsp.
jejuni CG8486]
Length = 372
Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 67/407 (16%), Positives = 129/407 (31%), Gaps = 48/407 (11%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYK 69
++ DL I L ++ +VGG+VRD + L + D DI I P +I K +
Sbjct: 10 NNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKLGAQ 69
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINAL 127
S+ + + K +D+ R++ + D K + RRDFTIN++
Sbjct: 70 GF--GKSF----FVYKFKNYDLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSM 123
Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ + +D+ GGL DL ++ ED LR+LR F + + K
Sbjct: 124 MINLFNDEFLDFYGGLKDLGVGFLR--HIDKQSFQEDSLRVLRAVVFASRFNFKITSESL 181
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ L + K + + + + +
Sbjct: 182 KLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQELDLEKQIFGFESIFKSL---EF 238
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + F L + +K +++ + + N F
Sbjct: 239 QNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRT-------KLKKEYLKYANQAFYLD 291
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+S E+ K+ + K + L + F ++L
Sbjct: 292 DISDFELAKIAFEMPLKEWLGLWSKKRIEQAKRLGLYENKFESKIL-------------- 337
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
D + G GK +G L ++ +L ++ L
Sbjct: 338 AKDFINAGF-CGKILGLKLQEARE-----------NELKEYIKGLAK 372
>gi|319897274|ref|YP_004135469.1| tRNA nucleotidyltransferase [Haemophilus influenzae F3031]
gi|329124006|ref|ZP_08252553.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116]
gi|317432778|emb|CBY81143.1| tRNA nucleotidyltransferase [Haemophilus influenzae F3031]
gi|327467431|gb|EGF12929.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116]
Length = 416
Score = 89.9 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 71/347 (20%), Positives = 121/347 (34%), Gaps = 25/347 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTIL-PDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L++L V+D D P ++ + + K P + K
Sbjct: 2 KVYLVGGAVRDQLLDLPVKDRDWIVVGTDPATLLSLGYQQVGKDFPVF--------LNPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D +RRD TINA+ + G++ID GG
Sbjct: 54 TKEEYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGK 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL NR ++ I ED LR+LR RF A Y S+ A+ L
Sbjct: 114 QDLENRILRHI---SPAFSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELALSGELQ 170
Query: 203 ERIWSEIN----KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ K L KNP ++ G +F ++ + E
Sbjct: 171 HLTAERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEIDALHGVPNPVKHHPEVDSFI 230
Query: 259 KIDSLLRFIVLI----SWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEI 313
+L+ V + +K ++ A L + + I + + +
Sbjct: 231 HTMLVLKQAVNLTENNPILNKSAVRFAAICHDLGKALTPQNILPHHYGHEQAGIKPTRSL 290
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
K + +A+L H + ++ + + W+K
Sbjct: 291 CKRLKVPSYFQELAELTCEFHTHIHKAFELRAETVITLFNRFDVWRK 337
>gi|94676710|ref|YP_589047.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
gi|166233843|sp|Q1LSL7|CCA_BAUCH RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|94219860|gb|ABF14019.1| tRNA nucleotidyltransferase [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 412
Score = 89.9 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 65/341 (19%), Positives = 115/341 (33%), Gaps = 20/341 (5%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+ + V++ D +++ + K P + K +
Sbjct: 4 YLVGGAVRDRLLQIPVKERDWVVIGTTLQDMLKAGYQQVGKDFPVF--------LHPKSH 55
Query: 89 FDITTLRSDLI-----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R + G K + D RRD TINA+ D+ G +ID G
Sbjct: 56 EEYALARIEKKSATGGYTGFTYKASSEITLEEDLKRRDLTINAIACDENGSLIDPYNGQR 115
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDGLVASIKAKKGLKILS 201
DL R ++ + ED LR+LR RF A Y I + + L +LS
Sbjct: 116 DLNQRWLRHV---SEAFCEDPLRVLRVARFAAQLAYLNFRIVPETRLMMQHMISELPLLS 172
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
ERIW E K L ++P + + G K +F ++ + E
Sbjct: 173 PERIWKETEKALATRDPQIYFQVLRDCGALKTLFPEIDALFGVPAPAKWHPEIDTGIHTM 232
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+ +S S+ R + + + + + +
Sbjct: 233 MTVAMAARLSDSIAVRFASLCHDIGKGLTPRDHW-PSHHGHGPAGIPLVQSLCQRLRVPN 291
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+A + + ++++ I W++P
Sbjct: 292 SIRNLAIIVTEYHDLLHYAVKLKPKTLIKLFYAIDVWRRPE 332
>gi|121612457|ref|YP_001000478.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|121504166|gb|EAQ72343.2| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni
81-176]
Length = 372
Score = 89.9 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 68/407 (16%), Positives = 128/407 (31%), Gaps = 48/407 (11%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYK 69
++ DL I L + +VGG+VRD + L + D DI I P +I K +
Sbjct: 10 NNPDLQFIAEFLKPYTKRVYLVGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKLGAQ 69
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINAL 127
S+ +C+ K +D+ R++ + D K + RRDFTIN++
Sbjct: 70 GF--GKSF----FVCKFKNYDLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSM 123
Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ + +D+ GGL DL ++ ED LR+LR F + + K
Sbjct: 124 MINLFNDEFLDFYGGLKDLGAGFLR--HIDKQSFQEDSLRVLRAVVFASRFNFKITSESL 181
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ L + K + + + +
Sbjct: 182 KLMQSMDITDLSKDRINAELCKFFKSPRLDVGYRYLQELGLEKQIFGFESVFMSL---EF 238
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + F L + +K +++ + + N F
Sbjct: 239 QNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRT-------KLKKEYLKYANQAFYLD 291
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+S E+ K+ + K + L + F ++L
Sbjct: 292 DISDFELAKIAFEMPLKEWLGLWSKKRIEQAKRLGLYENKFESKIL-------------- 337
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
D + G GK +G L ++ +L ++ L
Sbjct: 338 AKDFINAGF-CGKILGLKLQEARE-----------NELKEYIKGLAK 372
>gi|322496388|emb|CBZ31459.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 523
Score = 89.9 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 58/252 (23%), Positives = 98/252 (38%), Gaps = 31/252 (12%)
Query: 13 SDLINILSLL------NKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-------ILPDRV 59
++ L NK + + GG VRD L+ L DIDIA + +
Sbjct: 14 PAHQSVFDFLLSVAAENKLKATLRVAGGWVRDMLLGLHSNDIDIAIETHAGTKLVTGEAF 73
Query: 60 MRIFSK------------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAK 106
S+ + + P + T + + + LR+D+ T+
Sbjct: 74 AHRVSEYQLAHGGRGHTVSVIRSNPALSKHIETATVRVHEIPVEFCALRTDVYTNESRIP 133
Query: 107 VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL-NDLRNRTIKFIGDAHHRILEDYL 165
V D+ RRDFTINAL+ + +++ DLR R I+ + ++D L
Sbjct: 134 QVRPAAPVEDAQRRDFTINALFYNLHTGMVEDYTTGLEDLRLRIIRCPLEPRTTFMDDPL 193
Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKA----KKGLKILSSERIWSEINKLLEAKNPLNA 221
R+LR RF G N D + S + + +S ER+ E K++ A +P
Sbjct: 194 RLLRGVRFVGQLGALNFSLDESITSCMDDALLQVLQQKVSRERVGKEFVKMMAAAHPERC 253
Query: 222 IVHMYNGGIFKE 233
I +++ I +
Sbjct: 254 IALLHDMHILQH 265
>gi|148244357|ref|YP_001219051.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Candidatus
Vesicomyosocius okutanii HA]
gi|146326184|dbj|BAF61327.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Candidatus
Vesicomyosocius okutanii HA]
Length = 354
Score = 89.9 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 60/337 (17%), Positives = 117/337 (34%), Gaps = 25/337 (7%)
Query: 28 KSCIVGGAVRDSLMNL--SVQDIDIATTILPD-RVMRIFSKTRYKVIPTSISYGTIKIIC 84
K +VGGAVRD L+ + + D ++ + + K P +
Sbjct: 2 KIYLVGGAVRDRLLGIADDNTEKDWVVVGSSSTEMLDLGYRQVGKDFPVF--------LH 53
Query: 85 RKKYFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVG 140
+ R + Y + F + + D RRD TINA+ + ++ D
Sbjct: 54 PDTQEEYALARIERKLGIGYKRFEFDVSSSVTLEQDLSRRDLTINAIA-QKDDELFDPFN 112
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200
G DL NR ++ + + ED +R+LR RF A++ + + + +
Sbjct: 113 GQEDLNNRILRHVSND---FSEDPVRVLRVARFAAYFKNFGFEVEQETYQLMRQMVASGE 169
Query: 201 ----SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
+ ER++ E+NK L P + G ++++F + S E
Sbjct: 170 VDSLTPERVFKELNKALSYGTPSAFFKVLTACGAYQKVFPSLNNHIYQNYSNSFEFLDNL 229
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
K + ++F + + ++K +I + L F + +
Sbjct: 230 NTK--AHIKFSIWLKDENKYNIKCPKQYQQLSELTSQFYKFSKDFINKSSREIFDFFTQT 287
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353
L L +F L + L + +L+ +
Sbjct: 288 DALRRQDRFEDLLTVFKLLEIDILPIKHLKNLLKNID 324
>gi|134297207|ref|YP_001120942.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia vietnamiensis G4]
gi|166233850|sp|A4JIK4|CCA_BURVG RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|134140364|gb|ABO56107.1| metal dependent phosphohydrolase [Burkholderia vietnamiensis G4]
Length = 413
Score = 89.9 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 114/349 (32%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD+L+ + VQD D + P+++ ++ P + +
Sbjct: 3 IYAVGGAIRDALLGVPVQDRDYVVVGATPEQMAA----QGFR--PVGKDF--PVFLHPDT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ R++ T Y F D RRD TINA+ + VID
Sbjct: 55 QEEYALARTERKTAAGYHGFQFYYAPDVTLDEDLARRDLTINAMAREVSPDGTLIGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
G DLR R + + +ED +RILR RF A + + + + L +
Sbjct: 115 PFDGQADLRARVFRHV---SDAFVEDPVRILRIARFAARFADFTVADETLALMRRMVDAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
L ER+W EI + L P + G + +V + E
Sbjct: 172 EADALVPERVWQEIARGLMEATPSRMFDVLRECGALARVLPEVDALWGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + S+ + + + S+ IK
Sbjct: 232 TGVHVMMVVDYAAKQG----YSLPVRFAALTHDLGKATTPADVLPRHVGHEGRSVELIKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++ +KP
Sbjct: 288 LCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRLFERSDALRKP 336
>gi|238898624|ref|YP_002924305.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|259585844|sp|C4K6G4|CCA_HAMD5 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|229466383|gb|ACQ68157.1| fused tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase and phosphatase
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 405
Score = 89.9 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 71/410 (17%), Positives = 133/410 (32%), Gaps = 49/410 (11%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVR+ L+ L V + D P+ ++ + K K P + +
Sbjct: 3 VYLVGGAVRNRLLKLPVTERDWVVVGATPEEMLLLGYKKVGKNFPVF--------LHPET 54
Query: 88 YFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + + D LRRD TINA+ + +G +ID G
Sbjct: 55 KEEYALARTERKMAEGHTGFACYASPDVTLEEDLLRRDLTINAIACNDKGDLIDPYQGEK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK----I 199
DL ++ + +ED LR+LR RF A + D + + K
Sbjct: 115 DLNQLILRHV---SEAFIEDPLRVLRVARFAAQFAHLGFSIDSVTLDLMTKISQSGELLT 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
LS ER+W E K L + +P + + +F ++ + +
Sbjct: 172 LSPERVWKETEKALLSPSPHIYFQVLKHCSAILVLFPEID--------TLCSPLRCPLSH 223
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
S L ++ Q + ++ L + + L +
Sbjct: 224 GLSTLSIAAKLTDQKEVRFAALCHILGKKLTEYDVLGTHDRAVLKRVPLCDLNKIEQLCE 283
Query: 320 YGDKVMIAKLKIFLALHYNN----LTHQDTCFILQVLSDIIHWKKP-----LFPLTGDDV 370
+ + + L Y + +L ++ W+KP L ++ D
Sbjct: 284 RLKLPNLFRELLKHTLKYRGLVTIINRLSFPLLLNFFDELDLWRKPYRLEQLILISKADE 343
Query: 371 VKYGIPPGKK------VGNILVHCK----QEWINSSFQLSQEDLHHLLRK 410
G GK V + ++ + F +E + L +
Sbjct: 344 STEGGVEGKHDYQAQYVREAFNIARAVSVKKILEGGF--RKEAIQKELTR 391
>gi|146076571|ref|XP_001462959.1| tRNA nucleotidyltransferase [Leishmania infantum JPCM5]
gi|134067040|emb|CAM65146.1| putative tRNA nucleotidyltransferase [Leishmania infantum JPCM5]
Length = 523
Score = 89.9 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 58/252 (23%), Positives = 98/252 (38%), Gaps = 31/252 (12%)
Query: 13 SDLINILSLL------NKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-------ILPDRV 59
++ L NK + + GG VRD L+ L DIDIA + +
Sbjct: 14 PAHQSVFDFLLSVAAENKLKATLRVAGGWVRDMLLGLHSNDIDIAIETHAGTKLVTGEAF 73
Query: 60 MRIFSK------------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAK 106
S+ + + P + T + + + LR+D+ T+
Sbjct: 74 AHRVSEYQLAHGGRGHTVSVIRSNPALSKHIETATVRVHEIPVEFCALRTDVYTNESRIP 133
Query: 107 VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL-NDLRNRTIKFIGDAHHRILEDYL 165
V D+ RRDFTINAL+ + +++ DLR R I+ + ++D L
Sbjct: 134 QVRPAAPVEDAQRRDFTINALFYNLHTGMVEDYTTGLEDLRLRIIRCPLEPRTTFMDDPL 193
Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKA----KKGLKILSSERIWSEINKLLEAKNPLNA 221
R+LR RF G N D + S + + +S ER+ E K++ A +P
Sbjct: 194 RLLRGVRFVGQLGALNFSLDESITSCMDDALLQVLQQKVSRERVGKEFVKMMAAAHPERC 253
Query: 222 IVHMYNGGIFKE 233
I +++ I +
Sbjct: 254 IALLHDMHILQH 265
>gi|300705511|ref|YP_003747114.1| tRNA nucleotidyl transferase [Ralstonia solanacearum CFBP2957]
gi|299073175|emb|CBJ44533.1| tRNA nucleotidyl transferase [Ralstonia solanacearum CFBP2957]
Length = 429
Score = 89.9 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 62/354 (17%), Positives = 116/354 (32%), Gaps = 31/354 (8%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
VGGA+RD+L+ L VQD D + P + +T K P +
Sbjct: 18 HGLDVYAVGGAIRDTLLGLPVQDRDYVVVGATPAAMEARGFRTVGKDFPVF--------L 69
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK----- 134
+ + R++ T Y + D +RRD TINA+
Sbjct: 70 HPRTQAEYALARTERKTAAGYKGFSVYYAPDVTLEDDLVRRDLTINAMAQRVAEDGALVG 129
Query: 135 -VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
V+D GG DL R + + ED +RILR RF A + + ++ + +
Sbjct: 130 PVVDPYGGQADLAARAFRHV---SEAFAEDPVRILRVARFAARFADFHVAPETNALMQRM 186
Query: 194 KK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + L ER+W E + L P + + G + ++ +
Sbjct: 187 VEAGEVDALVPERVWQEFARGLMEARPSRMFAVLRDCGALARLLPELDRLWGVPQRADYH 246
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E ++ + ++ + + S+P
Sbjct: 247 PEIDTGVHTMMVVDTAAAMDTPLPVRFAALVHDLGKG----TTPADILPRHVGHEARSVP 302
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362
I+ + +L + +A + N+ D ++++L +KP
Sbjct: 303 MIEDVCQRLRVPTDCRELAVVVAREHGNIHRSDGFDATALVRLLERCDALRKPE 356
>gi|313673710|ref|YP_004051821.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Calditerrivibrio nitroreducens DSM 19672]
gi|312940466|gb|ADR19658.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Calditerrivibrio nitroreducens DSM 19672]
Length = 439
Score = 89.9 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 78/440 (17%), Positives = 152/440 (34%), Gaps = 77/440 (17%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV-----MRIFSKTRYKVIPT 73
+ + VGG VRD L+ V DID+ P+++ + ++
Sbjct: 19 IKFYRETGVDFYFVGGVVRDILLGRDVNDIDLV----PEKIDYVSCAEMLNRYIKGSFVH 74
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
++I DI+ LR D +RDFTIN L +
Sbjct: 75 FKD--NVRITKGGFTIDISRLRGL--------------SIVDDLKKRDFTINNLAYHFEK 118
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
++ LN+ R + L+D LR+LR +RF + +G I+ V +
Sbjct: 119 GLLGDPTDLNNKIIRAVS-----DQSFLDDPLRVLRGYRFASQFGF-TIEPHTGVLMKRY 172
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS----------- 242
L + +ERI E+N+ L +N L + M IF IF + I
Sbjct: 173 APLLVDIPAERINKELNETLLGENFLRILDTMIEDDIFLIIFPIFKTIKGLYGGVYHIED 232
Query: 243 -----LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS-------------------- 277
+ + + + + +L L+ K
Sbjct: 233 VLSHTFSVVKILYDMIKGYNETDRLILILAALLHDVGKGDEIFKATPGKFVGHEEISAKL 292
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQ--------KTLSIPEIKKLFYLYGDKVMIAKL 329
+ + KK + P +I + + + K +++ + Y +K++ +
Sbjct: 293 TIEVLKKLTYPVKIIKEVSTLVKKHGIIRKYATNGAKEITLLKFIFENYGILEKLIALSV 352
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
+ + +++ +T ++ L I + + G+D++K G+ G +G IL
Sbjct: 353 ADAQSKNRCDISFHNTIERIRSLIPRIDLSRKDL-INGNDIIKMGVEKGPLLGKILDDLH 411
Query: 390 QEWINSSFQLSQEDLHHLLR 409
+ + +L + LR
Sbjct: 412 FRLCAGIIK-DRGELDNYLR 430
>gi|217967903|ref|YP_002353409.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dictyoglomus turgidum DSM 6724]
gi|217337002|gb|ACK42795.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dictyoglomus turgidum DSM 6724]
Length = 469
Score = 89.9 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 78/471 (16%), Positives = 148/471 (31%), Gaps = 82/471 (17%)
Query: 12 DSDLINILSLLNKG----EDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKT 66
D +L IL ++ + IVGG +RD L+ + +DID D + I
Sbjct: 2 DKELYKILYVVREYAKVYNITPYIVGGFIRDYLLGKNPRDIDFLIHPFNVDFIDHIVKIL 61
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+++ +I+ + K ++ ++ + +RRDFTIN+
Sbjct: 62 NGRLVILDEERKYFRIVIKNKEKTFVL----------DFTPIYQQNLLFEIIRRDFTINS 111
Query: 127 LYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF------------ 173
+ + + K+ D + GL DL IK R ED LRILR FRF
Sbjct: 112 IVLNLKNFKIFDPLRGLEDLERNVIKLSSPNSLR--EDPLRILRVFRFGASGFKIDKNVL 169
Query: 174 --FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231
+ + K LK + W E+ + K + +
Sbjct: 170 ENIEKNSQNLSKIKPERIHEEIYKILKNPFTSHFWKEMEEYGVLKEIFPELSKIKYIPWS 229
Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL---------------------------- 263
K + + S+ L + + ++ S+
Sbjct: 230 KPHHENPLDHSITTLYVLEDLFYNMDFLFPSIKKDLENYFSKNLFSEFTKKETLKLTSLL 289
Query: 264 ---------------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN---- 304
L S + I +A++ L + F+ +
Sbjct: 290 HDIGKSKTYSIDEENLVHYYGHSKVGAEMIKEIAERLKLSNKELTFIQKLIRNHMYLIDL 349
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK-KPLF 363
K I I KL + V ++ + ++L + K P
Sbjct: 350 IKNPEIKTIHKLISRVNEDVPSLVFLFISDQIAIKGNFENKDYFEKLLEEFFKLKNIPKP 409
Query: 364 PLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
L+G ++++ + P VG + + I + +E + LR+++
Sbjct: 410 LLSGHEIMQLFNLNPSPIVGTLKEKLIEAQIEERVKTKEEAI-KFLREILE 459
>gi|73539928|ref|YP_294448.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Ralstonia
eutropha JMP134]
gi|123626027|sp|Q476S9|CCA_CUPPJ RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|72117341|gb|AAZ59604.1| metal dependent phosphohydrolase [Ralstonia eutropha JMP134]
Length = 415
Score = 89.9 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 57/347 (16%), Positives = 110/347 (31%), Gaps = 25/347 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGA+RD L+ QD D + P + YK P + + +
Sbjct: 2 QVYAVGGAIRDELLGKPSQDRDYVVVGATPADM----EAAGYK--PVGKDF--PVFLHPR 53
Query: 87 KYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK------VI 136
+ R++ + G D +RRD TINA+ VI
Sbjct: 54 TKEEYALARTERKTAMGYKGFAFYCEPDVTLDDDLVRRDLTINAMARAVDDDGKLVGPVI 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK- 195
D GG DL R + + ED +RILR RF A + + + + + +
Sbjct: 114 DPHGGQRDLAARQFRHV---SEAFAEDPVRILRVARFAARFHDFTVAPETVALMRRMVDA 170
Query: 196 -GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L ER+W E+ + L P + G + ++ + E
Sbjct: 171 GEVDALVPERVWQELARGLMEARPARMFEVLRQCGALARLLPELDRLWGVPQRADYHPEV 230
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ ++ + ++ ++ + + + ++
Sbjct: 231 DTGVHVMMVIDCAAAMGTTLAVRFAALVHDLGKG-TTPEHVLPRHLGHETRSVELLEDVC 289
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
K + D +A + + + I ++L +KP
Sbjct: 290 KRLRVPNDCRDLAVVVAREHGNIHRSMEFGAAAITRLLERCDALRKP 336
>gi|207741964|ref|YP_002258356.1| multifunctional cca protein [Ralstonia solanacearum IPO1609]
gi|206593350|emb|CAQ60277.1| multifunctional cca protein [includes: cca-adding enzyme (trna
nucleotidyltransferase) (trna
adenylyl-/cytidylyl-transferase) (trna
cca-pyrophosphorylase) (trna-nt); 2'-nucleotidase ; 2',
3'-cyclic phosphodiesterase ; phosphatase ] [Ralstonia
solanacearum IPO1609]
Length = 429
Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats.
Identities = 63/354 (17%), Positives = 116/354 (32%), Gaps = 31/354 (8%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
VGGA+RD+L+ L VQD D + P + +T K P +
Sbjct: 18 HGLDVYAVGGAIRDTLLGLPVQDRDYVVVGATPAAMEARGFRTVGKDFPVF--------L 69
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK----- 134
+ + R++ T Y + D +RRD TINA+
Sbjct: 70 HPRTQAEYALARTERKTAAGYKGFSVYYAPDVTLEDDLVRRDLTINAMAQRVAEDGALVG 129
Query: 135 -VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
V+D GG DL R + + ED +RILR RF A + E ++ + +
Sbjct: 130 PVVDPYGGQADLAARAFRHV---SEAFAEDPVRILRVARFAARFAEFHVAPETNALMQRM 186
Query: 194 KK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + L ER+W E + L P + + G + ++ +
Sbjct: 187 VEAGEVDALVPERVWQEFARGLMEARPSRMFAVLRDCGALARLLPELDRLWGVPQRADYH 246
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E ++ + ++ + + S+P
Sbjct: 247 PEIDTGVHTMMVVDTAAAMDTPLPVRFAALVHDLGKG----TTPADILPRHVGHEARSVP 302
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362
I+ + +L + +A + N+ D ++++L +KP
Sbjct: 303 MIEDVCQRLRVPTDCRELAVVVAREHGNIHRSDGFDATALVRLLERCDALRKPE 356
>gi|207727576|ref|YP_002255970.1| multifunctional cca protein [Ralstonia solanacearum MolK2]
gi|206590814|emb|CAQ56426.1| multifunctional cca protein [includes: cca-adding enzyme (trna
nucleotidyltransferase) (trna
adenylyl-/cytidylyl-transferase) (trna
cca-pyrophosphorylase) (trna-nt); 2'-nucleotidase ; 2',
3'-cyclic phosphodiesterase ; phosphatase ] [Ralstonia
solanacearum MolK2]
Length = 429
Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats.
Identities = 63/354 (17%), Positives = 116/354 (32%), Gaps = 31/354 (8%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
VGGA+RD+L+ L VQD D + P + +T K P +
Sbjct: 18 HGLDVYAVGGAIRDTLLGLPVQDRDYVVVGATPAAMEARGFRTVGKDFPVF--------L 69
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK----- 134
+ + R++ T Y + D +RRD TINA+
Sbjct: 70 HPRTQAEYALARTERKTAAGYKGFSVYYAPDVTLEDDLVRRDLTINAMAQRVAEDGALVG 129
Query: 135 -VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
V+D GG DL R + + ED +RILR RF A + E ++ + +
Sbjct: 130 PVVDPYGGQADLAARAFRHV---SEAFAEDPVRILRVARFAARFAEFHVAPETNALMQRM 186
Query: 194 KK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + L ER+W E + L P + + G + ++ +
Sbjct: 187 VEAGEVDALVPERVWQEFARGLMEARPSRMFAVLRDCGALARLLPELDRLWGVPQRADYH 246
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E ++ + ++ + + S+P
Sbjct: 247 PEIDTGVHTMMVVDTAAAMDTPLPVRFAALVHDLGKG----TTPADILPRHVGHEARSVP 302
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362
I+ + +L + +A + N+ D ++++L +KP
Sbjct: 303 MIEDVCQRLRVPTDCRELAVVVAREHGNIHRSDGFDATALVRLLERCDALRKPE 356
>gi|83746014|ref|ZP_00943070.1| tRNA nucleotidyltransferase [Ralstonia solanacearum UW551]
gi|83727408|gb|EAP74530.1| tRNA nucleotidyltransferase [Ralstonia solanacearum UW551]
Length = 461
Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats.
Identities = 63/354 (17%), Positives = 116/354 (32%), Gaps = 31/354 (8%)
Query: 25 GEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
VGGA+RD+L+ L VQD D + P + +T K P +
Sbjct: 50 HGLDVYAVGGAIRDTLLGLPVQDRDYVVVGATPAAMEARGFRTVGKDFPVF--------L 101
Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK----- 134
+ + R++ T Y + D +RRD TINA+
Sbjct: 102 HPRTQAEYALARTERKTAAGYKGFSVYYAPDVTLEDDLVRRDLTINAMAQRVAEDGALVG 161
Query: 135 -VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
V+D GG DL R + + ED +RILR RF A + E ++ + +
Sbjct: 162 PVVDPYGGQADLAARAFRHV---SEAFAEDPVRILRVARFAARFAEFHVAPETNALMQRM 218
Query: 194 KK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
+ + L ER+W E + L P + + G + ++ +
Sbjct: 219 VEAGEVDALVPERVWQEFARGLMEARPSRMFAVLRDCGALARLLPELDRLWGVPQRADYH 278
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
E ++ + ++ + + S+P
Sbjct: 279 PEIDTGVHTMMVVDTAAAMDTPLPVRFAALVHDLGKG----TTPADILPRHVGHEARSVP 334
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362
I+ + +L + +A + N+ D ++++L +KP
Sbjct: 335 MIEDVCQRLRVPTDCRELAVVVAREHGNIHRSDGFDATALVRLLERCDALRKPE 388
>gi|154173660|ref|YP_001408086.1| polyA polymerase family protein [Campylobacter curvus 525.92]
gi|153792994|gb|EAU00492.2| polyA polymerase family protein [Campylobacter curvus 525.92]
Length = 383
Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats.
Identities = 72/395 (18%), Positives = 138/395 (34%), Gaps = 25/395 (6%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVM 60
+S + K +SDL + LL + +VGG VRD+L+ + D DI I P +
Sbjct: 1 MSKIGSKICQNSDLDEVRRLLAPHTTRVYLVGGCVRDTLLGREIYDYDIEIYDIYPHKFD 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSL 118
+ SY I + K FD+ RS+ T R+ + D + L
Sbjct: 61 ALMQS--IGASGVGKSY----FIYKFKNFDLGLPRSESKTGERHKDFAVSYINDPRTACL 114
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDFTINA+ + + G D I + ED LR+LR +F A G
Sbjct: 115 RRDFTINAMMINIFDGELLDFYGGRDDLRGQILR-HIDEAKFCEDALRVLRGVQFSARLG 173
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ + L + K + + G F+
Sbjct: 174 FTIAPETLNLMKKLPLENLSRERINAELVKFFKAPNLHIGARYLFELNLLGWLFGKFVG- 232
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ + + Q F+ K ++LL+ ++ I + F L +
Sbjct: 233 -----GEFKGLCISRQEFD-KFNALLKNARKFVSDERLFIYLLCGYFGLDARANLERLKL 286
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
F+ + + + + + LK +L + + + + L++ +
Sbjct: 287 PKSFFSVEKEPFFKDEPSDFELMKIALKKPLKFWLGCY--DESRINRAKELKIYDE---- 340
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
+ + + ++ G+ G+++G + ++ I
Sbjct: 341 -RFSPDIKMNKILTLGLK-GEQIGAEIKRRQEAAI 373
>gi|303286187|ref|XP_003062383.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455900|gb|EEH53202.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 729
Score = 89.5 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 55/289 (19%), Positives = 98/289 (33%), Gaps = 18/289 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRI----FSKTRYKVIPTS--------- 74
+ GG VRD L+ + DIDIA +L + + V
Sbjct: 169 LRVAGGWVRDKLLGKNSTDIDIAIDSLLGREFAELVNAHLREKGETVHGVGVIQSNPDQS 228
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
T + + D+ LRS+ ++ + D+ RRD TINAL+ + K
Sbjct: 229 KHLETATMRVHDVWLDLVNLRSENYSEESRIPEMTFGSATDDAFRRDLTINALFYNINLK 288
Query: 135 VIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVAS 190
++ G+ DL++ ++ L+D LRILR RF + +G + +
Sbjct: 289 QVEDFTGMGLKDLQDGVVRTPLPPKTTFLDDPLRILRAVRFASRFGFVLDDEIVSAAGDA 348
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250
+S ER+ E++ +L +P +A+ + + + +
Sbjct: 349 DVQCALRTKVSRERVGKEVSGMLRGPSPGDAMTLLCRFRRVLLPHCLFEVVFTPASLINL 408
Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
EA S L S S + A + +
Sbjct: 409 EALSALPPNTTSWACLHSLRSLDALLSAHANAGGKPWSKSFSCEEREWL 457
>gi|307731311|ref|YP_003908535.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia sp. CCGE1003]
gi|307585846|gb|ADN59244.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia sp. CCGE1003]
Length = 417
Score = 89.5 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 123/349 (35%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P++++ Y+ P + + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQMVA----QGYR--PVGKDF--PVFLHPQT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ + R++ T Y F + D RRD TINA+ + + VID
Sbjct: 55 HEEYALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KK 195
GG DL+ + + + LED +RILR RF A + + + + L K
Sbjct: 115 PFGGQRDLQAKLFRHV---SDAFLEDPVRILRIARFAARFADFAVAPETLALMRKMVADG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L +ER+W E+++ L K P + G I ++ + E
Sbjct: 172 EVDALVAERVWQEVSRGLMEKKPSRMFAVLRECGALARILPEIDALFGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ ++ + + + S+ +K
Sbjct: 232 TGVHVMMVVDHAAQQG----YALPVRFAALTHDLGKASTPEDVLPRHIGHEGRSVDLLKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + N+ ++++L +KP
Sbjct: 288 LCERLRVPNECRDLALLVAREHGNIHRVMEMGAAALVRLLERGDAIRKP 336
>gi|283954362|ref|ZP_06371883.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni
414]
gi|283794161|gb|EFC32909.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni
414]
Length = 372
Score = 89.5 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 71/407 (17%), Positives = 135/407 (33%), Gaps = 48/407 (11%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYK 69
++ DL I L ++ +VGG+VRD + L V D DI I P+ +I K +
Sbjct: 10 NNPDLKFIADFLKPYTKRAYLVGGSVRDLFLGLKVCDYDIELYDIKPNDFEKIMQKLGAQ 69
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINAL 127
S+ + + K +D+ R++ T + D K + RRDFTIN++
Sbjct: 70 GF--GKSF----FVYKFKNYDLALARTENKTSYGHKGFEVQICNDEKLGAKRRDFTINSM 123
Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ + +D+ GGL DL+ +++I ED LR+LR F + + K
Sbjct: 124 MINLFNDEFLDFYGGLKDLKAGFLRYI--DKQSFQEDSLRVLRAVVFASRFDFKITSESL 181
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + K L + K + + + + +
Sbjct: 182 NLMQSMSIKDLSKDRINAELYKFFKSPRLDVGYRYLQELGLEKEIFGFESVFRSL---EF 238
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + F L + +K FF +K
Sbjct: 239 QAFLKQSREFVKNDALFLYLYLNFFNLEKD--------------------IFFKKTKLKK 278
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ ++ + +AK+ + L D I Q ++ + +
Sbjct: 279 EYLKQAKQVFYFNHISDFELAKIAFEMPLKEWLGLW-DEKRIEQAKRLRLYENRFESKIL 337
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
D + G GK +G L ++ +L ++ L
Sbjct: 338 AKDFINAGF-CGKILGLKLQKARE-----------NELKEYIKGLAK 372
>gi|119482211|ref|XP_001261134.1| poly(A) polymerase [Neosartorya fischeri NRRL 181]
gi|119409288|gb|EAW19237.1| poly(A) polymerase [Neosartorya fischeri NRRL 181]
Length = 633
Score = 89.5 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 72/474 (15%), Positives = 138/474 (29%), Gaps = 94/474 (19%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSK---------------------- 65
GG VRD L+ + DID+ +++ +
Sbjct: 151 LRFTGGWVRDKLLGVDSHDIDVGISSMTGYQFGMALKDYLDIPENLEKYKRNHPNGEMKE 210
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + P + T+ D+ LR + TD + + D+LR
Sbjct: 211 AIVSLHKIEANPEKSKHLETVTTKIFGLDIDLVNLRKETYTDDSRNPQMEYGTAEEDALR 270
Query: 120 RDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TINAL+ + ++ G +D+R++ I+ + + +D LR+LR RF +
Sbjct: 271 RDATINALFYNLNESKVEDLTGRGFSDMRDKIIRTPLEPYQTFKDDPLRVLRLIRFASRL 330
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIV----------HM 225
G + + +S ER+ +E+ K+L+ +P A+ +
Sbjct: 331 GYQIDPNTERAMQNSDISAALKLKISRERVGTELEKMLKGPDPRGALRFIDRLGLYHTIL 390
Query: 226 YNGGIFKEIFLDVQEISLDQLSQVIEAE----QVFEWKIDSLLRFIVLISWQDKKSILSM 281
N ++ + L ++ E E D L+R + + L+
Sbjct: 391 ANHQDDASADTSTWSLAYNALESLLHPEGPSKTALEKVRDFLMRSPLESYHAWMIAALAP 450
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM--IAKLKIFLALHYNN 339
F S+ K+ + GD + + + +L
Sbjct: 451 WSSVPPRVAKGPKAKPFPPRAAEVARDSLRSDNKMISVLGDAAASWRSIIDVKSSLLEGR 510
Query: 340 LTHQDTCFILQVLSDIIHWKK--------------------------------------- 360
+ Q+ I WKK
Sbjct: 511 MKGTAPEVRQQIGLYIKSWKKDWRLCIVLAILQEVMRGGELLPVIQEYDRFISYIIQNDL 570
Query: 361 -----PLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G D++K G + L + + +E L
Sbjct: 571 QGVCEMKPIVNGGDIMKALEAKNGPWMSKALDMVFKWQLLHPEITEKEKALKYL 624
>gi|162312548|ref|NP_594651.2| tRNA nucleotidyltransferase (predicted) [Schizosaccharomyces pombe
972h-]
gi|81175162|sp|Q9UTQ0|CCA1_SCHPO RecName: Full=Putative CCA tRNA nucleotidyltransferase 1; AltName:
Full=CCA-adding enzyme 1; AltName: Full=tRNA
CCA-pyrophosphorylase 1; AltName: Full=tRNA
adenylyltransferase 1; AltName: Full=tRNA
nucleotidyltransferase 1
gi|68638059|emb|CAB60249.2| tRNA nucleotidyltransferase (predicted) [Schizosaccharomyces pombe]
Length = 500
Score = 89.5 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 79/456 (17%), Positives = 147/456 (32%), Gaps = 73/456 (16%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKT-------------RYKVIPT 73
+ GG VRD L+ + DID+A + + P
Sbjct: 37 EVRFAGGWVRDKLLRIESHDIDVAIDCMSGFEFAQHLQSYLAQQHPDWETKVIKIDANPL 96
Query: 74 SISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ T DI LR T+ + + D+LRRD TINAL+ + +
Sbjct: 97 KSKHLETATARIMGMDIDIVNLRHHDYTNSNSSNKLVFGTPLEDALRRDATINALFYNLK 156
Query: 133 GKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--V 188
K ++ G DL N+ I+ A +D LR +R RF Y +
Sbjct: 157 SKTVEDFTGKGLVDLSNKIIRTPLVADETFGDDPLRAVRCIRFATKYDFNIHEETIKGLK 216
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
++ +S ERI E++K+L+ N A+ +++ G+F IF ++ + S+
Sbjct: 217 NPELHERLRSSISRERIGVEVDKMLKHCNTNRALKIIHSLGMFACIFGPLEIHTKKLQSK 276
Query: 249 VIEAEQVFEWKIDSL---------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
IE+ + + ID ++ + S ++ ++ + +
Sbjct: 277 NIESLSLIPYAIDLFGYLQKKDVSIKNLSSSSKYIFWLAIATLPWYNWSILEKSKIKILP 336
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL----SDI 355
I + + KI + LT +++ L DI
Sbjct: 337 PILIRDSLKYSKPIMSQVENFFVHYPLIMSKINVLEKEGKLTRLGCGRLVRELGPHWRDI 396
Query: 356 IHWK----------------------------------------KPLFPLTGDDVVK-YG 374
I W + G+++ + G
Sbjct: 397 IDWAFFMNTLISNSDIQRLNKDEEVTWFHVLVKHIEEYGMEEAYNIQPIINGNEITRILG 456
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
I PG + +L + I + ++ + +L K
Sbjct: 457 IRPGPHLRKMLDDSIEWRIQNPESTKEDYIAIMLEK 492
>gi|169831364|ref|YP_001717346.1| CBS domain-containing protein [Candidatus Desulforudis audaxviator
MP104C]
gi|169638208|gb|ACA59714.1| CBS domain containing protein [Candidatus Desulforudis audaxviator
MP104C]
Length = 873
Score = 89.5 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 60/403 (14%), Positives = 132/403 (32%), Gaps = 21/403 (5%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVIPTSISYGTIK 81
+ + G VRD + + ++ K ++ S TI
Sbjct: 473 SATGCAVYLTGEMVRDVFLGSPGGNPELVVEGNGPAFAEALTRKVGGRLHSDDRSEYTIA 532
Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----KVID 137
+ I LR+ G T + + RRDFT+NAL +VID
Sbjct: 533 --HNGRKITIVALRTGFSEHGSELPNDKTSALRHELYRRDFTVNALAVGLNPDRFGEVID 590
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK-AKKG 196
Y GG +DL + ++ + H ED +R+L+ + +G + +
Sbjct: 591 YFGGRDDLHHGVVRALH--SHSFEEDPVRLLQAVQLEQRFGFNIERETLKLIREAVRDRL 648
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-------SLDQLSQV 249
L +RIW+E +LL+ + + ++ +F D+ + +
Sbjct: 649 LSQAPPDRIWAEFRRLLKEPRVPATLARLAQLNLWPSLFPDILYWEVQPMISGIPKALDS 708
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+ + +V + L FI ++ W++ + + + + L + ++
Sbjct: 709 LGSWKVPQPAEPWLCYFIAILHWKNLVVVDELCRSYRLRKSQTDKILYTIAGW-RSAVSR 767
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ K ++ + + L + + ++ + +TG D
Sbjct: 768 LSAPKPPAVRTAALSLVNLPREGYPIVLLMLEKKAWKERFR--EALVTLYEHKPVITGKD 825
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ G + I + + +E+ L R+ +
Sbjct: 826 IRNLGYREQTGMKRIREAVWRAKLRGEATTREEE-MRLAREAM 867
>gi|33866784|ref|NP_898343.1| poly A polymerase family protein [Synechococcus sp. WH 8102]
gi|33639385|emb|CAE08769.1| Poly A polymerase family [Synechococcus sp. WH 8102]
Length = 396
Score = 89.5 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 58/411 (14%), Positives = 130/411 (31%), Gaps = 48/411 (11%)
Query: 12 DSDLINILSLLNKGED---------KSCIVGGAVRDSLMNL--SVQDIDIATTILPDRVM 60
+ IL L ++ +VGGAVRD+L++ D+D+ +
Sbjct: 6 NPPATAILERLAPERWPLPLDLLPAEAVLVGGAVRDALLDRLKPQPDLDLVVPSGALALT 65
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ G+ ++ +++ LR + R +AD RR
Sbjct: 66 CTLANRLG---------GSCVVLDQERDMARLVLRGWTVDIAR----QDGASLEADLQRR 112
Query: 121 DFTINALYADQQ--GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
D+ INA+ ++ID GGL DL+ + + +++
Sbjct: 113 DYRINAIALPLNGPAQLIDPTGGLADLQQGWLTAVRESNLT------------------- 153
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ + + + + + L P + + +
Sbjct: 154 DDPLRLLRGLRLMAEIPLSLDPMTAGWMRRHRQQLTQAAPERILAELQKLVAGPLADQAI 213
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+++ +L Q A+Q +D++ + L+ ++R
Sbjct: 214 EQLCQLELIQPWAADQPLPTSVDTIQMTTDEQEQALPLARLTALISDQGLEQLRGSRALR 273
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGD--KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
C ++ G+ ++ + + AL TC++ +
Sbjct: 274 QRCRRLRQWQRRLPDDPETLPEGERVQLHLDLDRDLAALILQLEPAHQTCWLQRWRDSED 333
Query: 357 HWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
P P+ G + + + PG ++G++L+H +QE Q + +
Sbjct: 334 PLFHPASPVDGTTLQRELKLAPGPRLGDLLMHLRQERAFGRLQSRDDAIQE 384
>gi|296157399|ref|ZP_06840234.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia sp. Ch1-1]
gi|295892171|gb|EFG71954.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia sp. Ch1-1]
Length = 410
Score = 89.5 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 61/346 (17%), Positives = 123/346 (35%), Gaps = 25/346 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P++++ Y+ P + + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQMVA----QGYR--PVGKDF--PVFLHPQT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ + R++ T Y F + D RRD TINA+ + + VID
Sbjct: 55 HEEYALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KK 195
G DL+ R + + LED +RILR RF A + + + + L K
Sbjct: 115 PFNGQGDLQARLFRHV---SDAFLEDPVRILRIARFAARFVDFTVAPETLALMRKMVADG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L +ER+W E+++ L K P + G I ++ + E
Sbjct: 172 EVDALVAERVWQEVSRGLMEKKPSRMFEVLRECGALARILPEIDALFGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + ++ ++ + + + + +
Sbjct: 232 TGVHVMMVVDHAAQQGYTLPVRFAALTHDLGKA-TTPEDVLPRHIGHEGRSVDLLKPLCE 290
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ D +A L + + + +++++ +KP
Sbjct: 291 RLRVPNDCRDLALLVAREHGNIHRVMEMGAAALVRLIERSDAIRKP 336
>gi|288818535|ref|YP_003432883.1| poly A polymerase [Hydrogenobacter thermophilus TK-6]
gi|288787935|dbj|BAI69682.1| poly A polymerase [Hydrogenobacter thermophilus TK-6]
gi|308752125|gb|ADO45608.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Hydrogenobacter thermophilus TK-6]
Length = 508
Score = 89.5 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 80/484 (16%), Positives = 157/484 (32%), Gaps = 98/484 (20%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSKTRYKVIPTS 74
I +L + E +VGG VRD L+ V D+D+ + P +V R F+
Sbjct: 27 IARVLPRDEF-CFVVGGWVRDRLLGEPVGYHIDVDLLVSCDPTKVARDFANLVGGAYFEF 85
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK----ADSLRRDFTINALYAD 130
G ++ ++ LR + +D + D L RDFT NA+
Sbjct: 86 EKKG---LLIKRPTIATVILRLPPYKYRFDFAQIKGKDLEKALIEDLLSRDFTANAMAVS 142
Query: 131 QQG---------KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
+ D G+ DL ++ + + + +D +R+LR FR +
Sbjct: 143 IDDVLSIGAKQTIIYDPAKGIEDLERGLLRPVSLKN--LEDDPVRMLRGFRLSVEKD-LS 199
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+ D + +K +ERI E+ K+L + I +YN GI + IF +++++
Sbjct: 200 LTEDFYDFVKRKGHLIKKAPAERITLELLKILRHRRSGKVIRDLYNHGILEAIFPEIEKL 259
Query: 242 SLDQLSQVIEAEQVFEWKI-------DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294
+ E + + + K SM
Sbjct: 260 REVNFQGDHHLYPLDEHTLRVVESIDQVIQERERYLDADLLKEFGSMHVHGEFSDIELLK 319
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGD---------------------------KVMIA 327
L + F+ T + K FY + + +
Sbjct: 320 LSALFHDIAKPHTFELKNGKVTFYNHDKLGASIVRDIGKRLKWGDDATEFVSKIVEHHLR 379
Query: 328 KLKIFLALHYNNLTHQDTCF--------------------------------ILQVLSDI 355
+ +L LT + +L+ + ++
Sbjct: 380 PFYLRESLKKGQLTDRGKAKFWRECSDIAAHLFLHAIADAIGSGDSKEEIDDLLKTIKEL 439
Query: 356 IHWKKP---LFP----LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+ +K+ P L+G +++ GIP G VG + ++ I + + +E +
Sbjct: 440 VRYKRERYDKLPTKALLSGREIMDILGIPEGPMVGYVKRALEEAQIEGAVRTKEEAI-EF 498
Query: 408 LRKL 411
++ +
Sbjct: 499 VKNI 502
>gi|88704599|ref|ZP_01102312.1| tRNA nucleotidyltransferase [Congregibacter litoralis KT71]
gi|88700920|gb|EAQ98026.1| tRNA nucleotidyltransferase [Congregibacter litoralis KT71]
Length = 443
Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 63/253 (24%), Positives = 105/253 (41%), Gaps = 20/253 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K+ +VGGAVRD L++ V++ D +PD ++++ + + +
Sbjct: 2 KTYLVGGAVRDELLDYPVKERDWVVVGAMPDELLKL------GFTQVGKDF--PVFLHPQ 53
Query: 87 KYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G T + D RRD TINA+ D G +ID GG
Sbjct: 54 TKEEHALARTERKKGHGYTGFETHYDATVTLEEDLQRRDLTINAIARDGDGSLIDPYGGS 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL NR ++ + +ED LR+LR RF A Y ++ I A+ L+
Sbjct: 114 ADLTNRILRHV---SDAFIEDPLRVLRVARFAARYAHLGFTVAKETLELMSEIVAQGELQ 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L +ERIW E + L ++P I + + G K + +V + E
Sbjct: 171 YLPAERIWVETERALREQDPQVFIEVLRDCGALKALLPEVDALFGIPQKATYHPEVDTGI 230
Query: 259 KIDSLLRFIVLIS 271
+ +L+ L+S
Sbjct: 231 HVLMVLKQAALLS 243
>gi|254251184|ref|ZP_04944502.1| HDIG [Burkholderia dolosa AUO158]
gi|124893793|gb|EAY67673.1| HDIG [Burkholderia dolosa AUO158]
Length = 413
Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 64/349 (18%), Positives = 114/349 (32%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P++++ ++ P + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQMIA----QGFR--PVGKDF--PVFLHPDT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ R++ T Y F D RRD TINA+ + VID
Sbjct: 55 QEEYALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREVSPDGALIGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
G DLR R + + +ED +RILR RF A + + + + +
Sbjct: 115 PFDGQADLRARVFRHV---SDAFVEDPVRILRVARFAARFADFTVADETRALMRRMVDAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L ER+W EI + L P + G I +V + E
Sbjct: 172 EVDALVPERVWQEIARGLMEAKPSRMFAVLRECGALTRILPEVDALWGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + S+ + + + S+ +K
Sbjct: 232 TGVHVMMVVDYAAKQG----YSLPVRFAALTHDLGKATTPADVLPRHIGHEGRSVDLLKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++ +KP
Sbjct: 288 LCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRLFERADAMRKP 336
>gi|317968539|ref|ZP_07969929.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
CB0205]
Length = 410
Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 57/389 (14%), Positives = 123/389 (31%), Gaps = 35/389 (8%)
Query: 26 EDKSCIVGGAVRDSLMNLS-------VQDIDIATTILPDRVMRIFSKTRYKV-------- 70
+ +VGG VRD L++ + D+D+ ++ F + V
Sbjct: 20 GQRCALVGGVVRDLLLHRHHEDPWRGLPDLDLVVEGRAADLVERFPEALRMVFAQPIPLQ 79
Query: 71 IPTSISYGTIKIICR-------KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
I S+GT+++ DI + RS+ +V D RRDFT
Sbjct: 80 IQEHGSFGTLELELDLPEGQGGTWLLDIASARSERYPQPGENPLVSPGLLDEDLARRDFT 139
Query: 124 INALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--- 179
+N++ + +++D G DL R ++F+ +D R++R R+ A G
Sbjct: 140 VNSMALTLERGQLLDPHRGQQDLSARQLRFLHPNSVS--DDPTRLVRAARYAARLGFDLA 197
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ ++ + +
Sbjct: 198 PDAFDQVRTTLASWPWRWRVGDDPGQAPPALGTRLRMELELLLSREPWPMALAALQRWGA 257
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
LD Q Q L ++ L++A++ LP +
Sbjct: 258 LAVLDSQLQADRHLQRRLHWAQRLQVPLLPALLAGASDPLALAERLQLPHRQHKLIAQML 317
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ + ++ + + + ++ + LAL + ++ + W+
Sbjct: 318 DLDQRLQSQPAVQAPSAWCECLEAPGVSPESVALALAAGIGQRRP------LIRWLFRWR 371
Query: 360 KPLFPLTGDDVV-KYGIPPGKKVGNILVH 387
P++ ++ + PG K+G+ +
Sbjct: 372 HVRSPVSAQSLMLSEQLSPGPKLGDRIKF 400
>gi|95930210|ref|ZP_01312948.1| Polynucleotide adenylyltransferase region [Desulfuromonas
acetoxidans DSM 684]
gi|95133673|gb|EAT15334.1| Polynucleotide adenylyltransferase region [Desulfuromonas
acetoxidans DSM 684]
Length = 422
Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 72/427 (16%), Positives = 144/427 (33%), Gaps = 48/427 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI- 71
L + L +VGGA+RD+L+ + QDID+ T P + + FSK +
Sbjct: 9 PHLATLQHLSQHHALPIYVVGGALRDALLGHACQDIDLITPGDPTPIAQAFSKQQSGHWF 68
Query: 72 --PTSISYGTIKIICRKK--YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
Y + + +D R+D D RDFTINA+
Sbjct: 69 WLDQQRLYSRVIVNEGNTALQYDFAPFRAD--------------TLDEDLRLRDFTINAI 114
Query: 128 YADQQG--KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ +D + G +DL NR ++ +D LR+L+ R A +G +ID
Sbjct: 115 ACSVDDLTQWVDPLSGQSDLENRLLRECS--EQSFSDDPLRMLKGLRHCAQFG-LSIDQT 171
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG----------IFKEIF 235
L ++ ERI E+ LL +P +A+ + G F
Sbjct: 172 TWQHCQNEAPQLVHVAGERIRQELAVLLAQPSPQHALHLFHQSGLAQAVGFPELDNDRNF 231
Query: 236 LDVQEISLDQL------SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289
V L + + + F + L + +D + + + + R
Sbjct: 232 PSVDRARLRRFFPQAEKAFFHDLCDEFNFDSFVKLCHYFSLLTEDTSKLDELLSRVKMSR 291
Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD----- 344
+ T+ ++ + L + ++
Sbjct: 292 KGARLATFVHRFCRADTTMIHHQVTPDRVRLLWLEDLRAPLPEALLLLGVMERREVMLTC 351
Query: 345 TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP--PGKKVGNILVHCKQEWINSSFQLSQE 402
+ + +++ + ++G + + P G+ +G +L +Q + + Q+
Sbjct: 352 WQRLYALCDELLVNGRVRPLVSGARLQEL-CPDCSGQALGKLLKKLRQAELKGTIATLQQ 410
Query: 403 DLHHLLR 409
++L++
Sbjct: 411 AENYLIQ 417
>gi|123408241|ref|XP_001303159.1| polyA polymerase family protein [Trichomonas vaginalis G3]
gi|121884516|gb|EAX90229.1| polyA polymerase family protein [Trichomonas vaginalis G3]
Length = 449
Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 82/430 (19%), Positives = 145/430 (33%), Gaps = 49/430 (11%)
Query: 18 ILSLLNKGEDK------SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKV 70
I + D + GG VRD L+N DIDI + ++ K
Sbjct: 22 IFDKIRSAGDHFGNKVVCRVAGGWVRDKLLNKECDDIDICVEGCTSEEFALQLAEQYPKK 81
Query: 71 ---------IPTSISY-GTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
P + T+++ I + DI LR + + D+
Sbjct: 82 ATKIVVFEENPKQAKFMKTVRVCIYGSAWIDICNLRGENL----------VATALTDAQH 131
Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RD +INAL+ + KV D+VGG+ DL+N+ I+ ED LRI+R RF YG
Sbjct: 132 RDLSINALFYNITDSKVEDFVGGIQDLKNQVIRTPISPDVTFTEDPLRIIRSIRFHVRYG 191
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
K ++ +A + + +S ERI SEI K++ + + + G F+ IF
Sbjct: 192 YKIDENLLEIAKLHLSDFEQRVSKERIASEIIKIIRMDGFIEFVDLIIKIGFFETIFDPF 251
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSL------------LRFIVLISWQDKKSILSMAKKFS 286
S+D L V + + + + + +
Sbjct: 252 HRYSIDPLQARERLSIVTQRSPKEFVIPIQLGAILFPIYNEEPVPDPEHPKTKIPPIECT 311
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346
+ R +++ N K KL + I+ + + +
Sbjct: 312 ICRYLKFLTKYAHEANILVKGALRANTIKLDRRIVGHWIREIGPIWPFIKFLIFDQAEYE 371
Query: 347 FILQVLSDIIHWK------KPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQL 399
VL + I + + G D+ G+ GK + + +
Sbjct: 372 KCENVLYNFIREQGLATCYDMKCLINGKDLANLLGVKLGKGFQTHVDDLIDWQL-GNPNG 430
Query: 400 SQEDLHHLLR 409
++ED ++
Sbjct: 431 TREDYIEFIK 440
>gi|154331972|ref|XP_001561803.1| tRNA nucleotidyltransferase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059123|emb|CAM41598.1| putative tRNA nucleotidyltransferase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 518
Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 63/253 (24%), Positives = 97/253 (38%), Gaps = 31/253 (12%)
Query: 12 DSDLINILSLL------NKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-------ILPDR 58
+ +L +K E + GG VRD L+ L DIDIA + +
Sbjct: 8 SPAHQKVFDVLLSVAAESKLEATLRVAGGWVRDMLLGLHSNDIDIAIETHPNAEPVTGEA 67
Query: 59 VMRIFSK------------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYA 105
SK + + P + T + + + LRSD+ TD
Sbjct: 68 FAHHVSKYQLFHGDRSHKVSVIRSNPALSKHIETATLRVNEIPVEFCALRSDVYTDESRI 127
Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL-NDLRNRTIKFIGDAHHRILEDY 164
V D+ RRDFTINAL+ + +++ DLR R I+ + +D
Sbjct: 128 PQVHPAAPLEDAQRRDFTINALFYNLHTGMVEDYTTGLEDLRLRIIRCPLEPRTTFTDDP 187
Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK----ILSSERIWSEINKLLEAKNPLN 220
LR+LR RF G N D L+ + L +S ERI E K++ A +P
Sbjct: 188 LRLLRGVRFVGQLGALNFSLDELITNCVDDSLLDVLQLKVSRERIGKEFVKMMTAAHPER 247
Query: 221 AIVHMYNGGIFKE 233
I +++ I +
Sbjct: 248 CIALLHDMHILQH 260
>gi|8809691|dbj|BAA97232.1| unnamed protein product [Arabidopsis thaliana]
Length = 499
Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 65/337 (19%), Positives = 106/337 (31%), Gaps = 29/337 (8%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
+L+ L +VGG VRD ++ + +D DI T+ V
Sbjct: 78 MIAKSTRKVLNGLKSKGHDVYLVGGCVRDLILKRTPKDFDILTSAELREV---------- 127
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
S+ T R++ RDFTIN L
Sbjct: 128 -----SSFST------SAQNSSRNTRTECKESSGSDGDEDCIRLNNCLQ-RDFTINGLMF 175
Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
D K V DY+GG+ D+R ++ + A +D RILR R A G + +
Sbjct: 176 DPYAKVVYDYLGGMEDIRKAKVRTVIHAGTSFHQDCARILRAIRIAARLGF-RMSKETAH 234
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----DVQEISLD 244
++ L RI E+N +L + ++ ++ GI + + +
Sbjct: 235 FIKNLSLLVQRLDKGRILMEMNYMLAYGSAEASLRLLWKFGILEILLPIQAAYLARSGFR 294
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF-SLPREIRYFLISFFNCNF 303
+ + +D LL +IL+ K PR +
Sbjct: 295 RRDKRTNMLLSLFANLDKLLAPDRPCHSSLWIAILAFHKALADKPRSPIVVAAFSLAVHN 354
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340
L EI K DK ++ L + L
Sbjct: 355 CGDILEAVEITKKITRPHDKSFFELVEPEENLDFQTL 391
>gi|146323072|ref|XP_756003.2| tRNA nucleotidyltransferase [Aspergillus fumigatus Af293]
gi|129558602|gb|EAL93965.2| tRNA nucleotidyltransferase [Aspergillus fumigatus Af293]
Length = 633
Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 75/474 (15%), Positives = 146/474 (30%), Gaps = 94/474 (19%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSK---------------------- 65
GG VRD L+ + DID+ +++ +
Sbjct: 151 LRFTGGWVRDKLLGVDSHDIDVGISSMTGYQFGMALKDYLDIPENLEKYKRNHPNGHMKE 210
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + P + T+ D+ LR ++ TD + + D+LR
Sbjct: 211 AIVSLHKIEANPEKSKHLETVTTKIFGFDIDLVNLRKEMYTDDSRNPQMEFGTAEEDALR 270
Query: 120 RDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TINAL+ + ++ G +D+R++ I+ + + +D LR+LR RF +
Sbjct: 271 RDATINALFYNLNESKVEDLTGRGFSDMRDKIIRTPMEPYQTFKDDPLRVLRLIRFASRL 330
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G K + +S ER+ +E+ K+L+ +P A+ + G++ IF
Sbjct: 331 GYKIDPNTERAMQNSDISVALKLKISRERVGTELEKMLKGPDPRGALQLIDRLGLYHTIF 390
Query: 236 LDVQE----------ISLDQLSQVIEAE----QVFEWKIDSLLRFIVLISWQDKKSILSM 281
+ Q+ ++ + L ++ E E D L+R + + L+
Sbjct: 391 ANHQDDVSADTSTWSLAYNALESLLHPEGPSKTALENVRDFLMRSPLESYHAWMIAALAP 450
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM---------------- 325
S+ KL + GD
Sbjct: 451 WSSVPQRVAQGPKAKPLPPRAAEVARDSLRSDNKLTSVLGDASASWRSIIDVKSSLLEGR 510
Query: 326 ---------------------IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP--- 361
+L I LA+ + + ++Q I +
Sbjct: 511 MNGTTPEVRQQIGLYIKSWKKDWRLCIVLAILQEVMRGAELLSVIQEYDRFISYIIQNNL 570
Query: 362 ------LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G +++K G + L + + +E L
Sbjct: 571 QGVCEMKPIVNGAEIMKALEAKNGPWMSRALDMVFKWQLLHPEITEKETALKYL 624
>gi|88807090|ref|ZP_01122602.1| Poly A polymerase family protein [Synechococcus sp. WH 7805]
gi|88788304|gb|EAR19459.1| Poly A polymerase family protein [Synechococcus sp. WH 7805]
Length = 421
Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 74/387 (19%), Positives = 137/387 (35%), Gaps = 28/387 (7%)
Query: 31 IVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+N D+D+ +++ ++ +G + ++ +
Sbjct: 44 LVGGAVRDGLLNRLPPCPDLDLVIPGAVLGIVQGLAR----------DHGGVCVVLDE-- 91
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ--GKVIDYVGGLNDLR 146
R L + D + D RRDF +NA+ ++ D GGL DL+
Sbjct: 92 -QRDMARLVLNGWTIDFARIEGNDLREDLFRRDFKLNAIALSLSEPQQLFDPTGGLKDLQ 150
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
N I I +++ R +D LR+LR R A E ID+D L + L + ERI
Sbjct: 151 NGLISAIRESNLR--DDPLRLLRALRLMAEL-EMRIDADTLAMMKANSQLLSQSAPERIQ 207
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
+E+ +L+ A AI M + + + + + S + + +L
Sbjct: 208 AELLRLVSAPAADQAIALMNSLSLLQPWRAEEAQHSDTTTDMTVTDAPWMTEEEHNLAMP 267
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ ++ K R + ++ + + +
Sbjct: 268 LARLTGLLSDQ---GLKSLRFSRRQIQRCMRLRYWQKRLGADHDNPPSEVEMVRLHQELE 324
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNIL 385
A L L +Q + H P P+ GD + + + PG ++G ++
Sbjct: 325 ADLPALLLHWPEQRRNQWMQRWRDPEDPLFH---PCSPVDGDSLQAELSLKPGPRLGALI 381
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLI 412
H Q+ L R+ +
Sbjct: 382 KHLTIAHAYGRVVSQQQALDE-ARRWL 407
>gi|159130057|gb|EDP55171.1| tRNA nucleotidyltransferase [Aspergillus fumigatus A1163]
Length = 633
Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 75/474 (15%), Positives = 146/474 (30%), Gaps = 94/474 (19%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSK---------------------- 65
GG VRD L+ + DID+ +++ +
Sbjct: 151 LRFTGGWVRDKLLGVDSHDIDVGISSMTGYQFGMALKDYLDIPENLEKYKRNHPNGHMKE 210
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + P + T+ D+ LR ++ TD + + D+LR
Sbjct: 211 AIVSLHKIEANPEKSKHLETVTTKIFGFDIDLVNLRKEMYTDDSRNPQMEFGTAEEDALR 270
Query: 120 RDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TINAL+ + ++ G +D+R++ I+ + + +D LR+LR RF +
Sbjct: 271 RDATINALFYNLNESKVEDLTGRGFSDMRDKIIRTPMEPYQTFKDDPLRVLRLIRFASRL 330
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G K + +S ER+ +E+ K+L+ +P A+ + G++ IF
Sbjct: 331 GYKIDPNTERAMQNSDISVALKLKISRERVGTELEKMLKGPDPRGALQLIDRLGLYHTIF 390
Query: 236 LDVQE----------ISLDQLSQVIEAE----QVFEWKIDSLLRFIVLISWQDKKSILSM 281
+ Q+ ++ + L ++ E E D L+R + + L+
Sbjct: 391 ANHQDDVSADTSTWSLAYNALESLLHPEGPSKTALENVRDFLMRSPLESYHAWMIAALAP 450
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM---------------- 325
S+ KL + GD
Sbjct: 451 WSSVPQRVAQGPKAKPLPPRAAEVARDSLRSDNKLTSVLGDASASWRSIIDVKSSLLEGR 510
Query: 326 ---------------------IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP--- 361
+L I LA+ + + ++Q I +
Sbjct: 511 MNGTTPEVRQQIGLYIKSWKKDWRLCIVLAILQEVMRGAELLSVIQEYDRFISYIIQNNL 570
Query: 362 ------LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G +++K G + L + + +E L
Sbjct: 571 QGVCEMKPIVNGAEIMKALEAKNGPWMSRALDMVFKWQLLHPEITEKETALKYL 624
>gi|240947943|ref|ZP_04752370.1| putative poly(A) polymerase [Actinobacillus minor NM305]
gi|240297737|gb|EER48196.1| putative poly(A) polymerase [Actinobacillus minor NM305]
Length = 399
Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 62/391 (15%), Positives = 135/391 (34%), Gaps = 37/391 (9%)
Query: 39 SLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL 98
L+ + +D DI+T P+ V +IF + + I+ ++ +++ T R+
Sbjct: 1 MLLGKNPKDFDISTNARPEEVQKIFGRQ---CRLVGRRFRLAHIVFGREIYEVATFRAGH 57
Query: 99 ITD-----------GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLR 146
G + + D+ RRDF++NA Y D + + D+ GL DL
Sbjct: 58 ENHTNDKISKISDAGMLLRDNVYGTMREDAERRDFSVNAFYYDPRHNLIYDFFNGLEDLN 117
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
++ +G+ R ED +R+LR RF A +D + LK++ + R++
Sbjct: 118 AGKLRLLGNPVQRYQEDPVRMLRAIRFMAKLDMF-LDRATADPIKEMAPLLKMIPAARLF 176
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE--QVFEWKIDSLL 264
E KLL++ L + +F+ +F + ++ E + + +
Sbjct: 177 DESLKLLQSGAGLKTYQLLREYHLFEPLFPVLMPFFTEKQDSNAERMITKALTSTDERIR 236
Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324
+ + ++ + + ++ + + E K L+
Sbjct: 237 DKLPVNPAFLFAALFWYPLREKIDELKNEGGLNNHDSMMLAANDILDESCKSVALHRRHT 296
Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF--PLTGDDVVKYGIPPGKKVG 382
+ + L T + L+ + + + G D+V+
Sbjct: 297 GVIREIWALQFQMTRRTGKRPLQTLEAQKFRAGFDLLVMRAEIEGGDLVELS-------- 348
Query: 383 NILVHCKQEWINSSFQLS--QEDLHHLLRKL 411
W F + ++ ++KL
Sbjct: 349 -------AWWHEFQFSNDQQRAEMLQAVKKL 372
>gi|298485293|ref|ZP_07003385.1| tRNA nucleotidyltransferase [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|298160143|gb|EFI01172.1| tRNA nucleotidyltransferase [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
Length = 409
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 75/410 (18%), Positives = 138/410 (33%), Gaps = 53/410 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ V DID + ++ + P + + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTEDMLVKGYRPVGTYFPVFL-----HPLTNE 56
Query: 87 KYFDITTLRSDLITDGRYAKV-VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+Y T R + G + + D +RRD TINA+ D+ G + D G DL
Sbjct: 57 EYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDL 116
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKILS 201
R ++ + ED LR+LR RF A Y + + LK L+
Sbjct: 117 EARILRHV---SPAFAEDPLRVLRVARFAARYARYGFTIAPETLGLMRQLSESGELKALT 173
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE---------- 251
+ER W EI++ L + P I +++ G KE+ +V+ +
Sbjct: 174 AERSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEALFGVPQPATHHPEIDTGVHVL 233
Query: 252 --AEQVFEWKIDSLLRFIVLISWQDK---KSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
EQ K +R+ L+ K +R ++
Sbjct: 234 SVLEQSAIHKHPLTVRWACLLHDLGKGLTPEAEWPRHIAHEHTGLRLIKAVNERFRVPRE 293
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL-------------- 352
+ + ++ +G + + K L L + ++ + +
Sbjct: 294 CQELALLVGQYHTHGHRALELKPSTLLELLQSVDVYRRPQRFEEFIAACEMDARGRHGFE 353
Query: 353 -------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV--HCKQEWI 393
+ + ++ +++ G GK++G+ L K I
Sbjct: 354 QRSYPQADYLRGAAQAARTVSVQPLLEKGFK-GKELGDALKNERLKALKI 402
>gi|145489038|ref|XP_001430522.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397620|emb|CAK63124.1| unnamed protein product [Paramecium tetraurelia]
Length = 507
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 71/449 (15%), Positives = 148/449 (32%), Gaps = 68/449 (15%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDR----VMRIFSKTRYKVIPTS--------- 74
+ GG VRD LM DIDI + ++ + F KV
Sbjct: 51 LRVAGGWVRDKLMGNESHDIDITIDNMSGEQFVLKMKDYFESKNIKVSGFGVTKLNPEQS 110
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
T I + D LR + T + + D+ RRD TIN+++ + +
Sbjct: 111 KHLETACIKILDQSIDFVNLRGETYTQNSRTPQIVVGTPEQDAFRRDLTINSMFYNLNTQ 170
Query: 135 VIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
I+ GL DL N I+ D + +D LRILR FRF + + ++ V ++
Sbjct: 171 EIEDLTKMGLQDLENGIIRTPLDPYITFKDDPLRILRTFRFATRFNFQIVEEIIKVIELQ 230
Query: 193 AKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241
K +S ERI E++ +L+++ L + + + G++ IF ++
Sbjct: 231 DIKEALQNKVSRERISIEMDWMLKSEKCLQGLKNYHELGLWCIIFELPKQNQNQCNVKVE 290
Query: 242 -----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
L L + + + + + L + + +
Sbjct: 291 DQGKYHLESFKYLKTLQDLKYFPKFPQIHGFESQQQLNLYLNLSCICLPYQKITYKKGKN 350
Query: 291 IRYFLISFFNCNFNQKTLSIPEIK------KLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344
I +I + S EI + F + +I + + + +
Sbjct: 351 IESTIIYILAESLKMTRKSTDEIYNACRLVEQFNQLKKEELINNYRRIVTFLQDAKQQWE 410
Query: 345 TCFILQVLSD-----------------------IIHWKKPLFPLTGDDVVKYGIPPGKKV 381
+ L + + + + G+++ + K++
Sbjct: 411 LILYIDYLQEYINDPQATPQLNEKFQNFVYSQNLQEFYNAKALIDGNEIKQIWKVEAKQI 470
Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRK 410
++ + + ++ED+ ++ +
Sbjct: 471 KDVKQNILIWQAMNP-NGTREDILKVIEQ 498
>gi|169611692|ref|XP_001799264.1| hypothetical protein SNOG_08960 [Phaeosphaeria nodorum SN15]
gi|160702347|gb|EAT84128.2| hypothetical protein SNOG_08960 [Phaeosphaeria nodorum SN15]
Length = 875
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 63/456 (13%), Positives = 134/456 (29%), Gaps = 64/456 (14%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPD----RVMRIF----------- 63
L + + GG VRD L+ + QDID+A + + ++
Sbjct: 80 EELARQKTTLRWTGGWVRDKLLKVGSQDIDLAINNMTGEHFGLKMQEYLEIPGHAEKHDL 139
Query: 64 --------SKTRYKVIPTS-----------ISYGTIKIICRKKYFDITTLRSDLITDGRY 104
+ + K I + T D+ LR + +
Sbjct: 140 LGKDDQSKAHEKSKNIAPGLHKIEANPEKSKNLETATTKIMGIDLDLVNLRKETYNEVSR 199
Query: 105 AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILE 162
+ + D++RRD TINA++ + ++ G ND+ + I+ + +
Sbjct: 200 NPQMEFGTAEEDAMRRDATINAMFYNLHTCEVEDFTQQGFNDMAAKLIRTPLEPTQTFKD 259
Query: 163 DYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
D LR+LR RF + + + + +S ER+ E+ K+L P
Sbjct: 260 DPLRVLRLIRFASRLDYVIEAETAKAMGDPEIQDVLKIKISRERVGIELEKMLRGPRPRM 319
Query: 221 AIVH-----MYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK 275
A+ +Y + + + + L+ +
Sbjct: 320 ALELIDRFGLYKTVFTDPTRVLPSDPETELFKSSYNFVDSVPFFAAYLVAREGFKAPNKV 379
Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG---------DKVMI 326
+ +A E+R + T++ + + G + +
Sbjct: 380 CDV--VAASLGHGEEVRAMVAQCAKGLRRPDTINPADNPTGRDILGMALRRWGSTWRTQV 437
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK-----PLFPLTGDDV-VKYGIPPGKK 380
++ + + L+ + L G D+ G PG
Sbjct: 438 FFNLVYEVVQGQSSKEDILGSYAAFLNQLAKHDILDVDTFKPLLKGTDLAKALGTKPGPW 497
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ + L + + + + +R AS +
Sbjct: 498 MKDALDVVMAWQLRNPDSIDADAAIEAVR---ASRE 530
>gi|171690554|ref|XP_001910202.1| hypothetical protein [Podospora anserina S mat+]
gi|170945225|emb|CAP71336.1| unnamed protein product [Podospora anserina S mat+]
Length = 567
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 76/468 (16%), Positives = 149/468 (31%), Gaps = 86/468 (18%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK----------TRYKVIPTSISY 77
GG VRD L+ + DID A + + + +
Sbjct: 93 LRWAGGWVRDKLLGIKSHDIDTAINNLTGEAFVGKLRDYVEIPGNKQLHNLMDSDIGRLH 152
Query: 78 ------------GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
T I D LR + + V + D+ RRD T+N
Sbjct: 153 TVARNPDKSKHLETSTIKLCGLDVDFVNLRKETYCENSRNPEVEFGKAEEDAARRDATVN 212
Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
AL+ + Q +V D VGGL DL I+ + ++D LR+LR RF + G K +
Sbjct: 213 ALFYNLQTGEVEDLVGGLPDLGAGIIRTPMEPLQTFMDDPLRVLRLVRFASRLGFKIDKA 272
Query: 185 DGLVASIKA--KKGLKILSSERIWSEINKLLEAKNPLNAIVH-----MYNGGIFKEIFLD 237
V + + + +S ERI E+ K+L+ K+P+ ++ +Y+ D
Sbjct: 273 AEEVMADENVLRNLKIKISRERIGVELEKMLKGKHPVESLRLINRLGLYHAVFTVPERTD 332
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE------- 290
+ + + + + E E + +L++ ++ + + +
Sbjct: 333 MPKPDISKWDRAYECLVFLESNNTPGSIWELLVTTEEARYFAWSLATITPWEQLPDDPPL 392
Query: 291 ----------IRYFLISFFNCNFNQKTLSIPEIK-------KLFYLYGDKVMIAKLKIFL 333
+ F N ++ K M + K +
Sbjct: 393 KSGKLAMPLATQAAREGFKAPNKLSDVITAAHRHRPAILELKALVDENKDEMKDRAKFGM 452
Query: 334 ALHYNNLTHQDTCF------------------------ILQVLS-----DIIHWKKPLFP 364
A+ + + + L+ L D++H K
Sbjct: 453 AIREWDSRAKGSWRLQVLYSILVDVLEGSTSREEILMGWLRFLDHLVELDLMHVTKLDRI 512
Query: 365 LTGDDV-VKYGIPPGKKVGNILVHCKQEWINS-SFQLSQEDLHHLLRK 410
+ G D+ G+ PG+ +G L + + + + + + ++
Sbjct: 513 IDGTDLSKALGVKPGRWMGAALEVVMEWQLRNPGVEDPAGAVEEVKKR 560
>gi|330998967|ref|ZP_08322692.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Parasutterella excrementihominis YIT 11859]
gi|329575709|gb|EGG57235.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Parasutterella excrementihominis YIT 11859]
Length = 370
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 23/228 (10%)
Query: 30 CIVGGAVRDSL---MNLSV--QDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
IVGG VRD L + + D D T P+ ++R+ +P + +
Sbjct: 6 YIVGGWVRDKLLTELGHPIQSNDKDWVVTGATPEEMLRL------NFVPVGNDF--PVFL 57
Query: 84 CRKKYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKVIDYV 139
K + + R++ + Y + + D LRRD T+NA+ D++G +ID
Sbjct: 58 HPKTHEEYALARTERKSGHGYKGFTFFADPSVTLEQDLLRRDLTVNAMAMDEEGHLIDPY 117
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GL 197
GG DL+ ++ + ED LR+LR RF A I + + + +
Sbjct: 118 GGFEDLKKGVLRHV---SAAFEEDPLRVLRVSRFRAKLPWFRIAEETKAMLKRMVESGEV 174
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L ER+ +EI K L+ P + G ++ + ++ L +
Sbjct: 175 DALVPERVTAEIRKALKEAKPSIFFDELETNGFMGRVYPEWKQTELSR 222
>gi|303256272|ref|ZP_07342288.1| multifunctional CCA protein [Burkholderiales bacterium 1_1_47]
gi|302861001|gb|EFL84076.1| multifunctional CCA protein [Burkholderiales bacterium 1_1_47]
Length = 370
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 23/228 (10%)
Query: 30 CIVGGAVRDSL---MNLSV--QDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKII 83
IVGG VRD L + + D D T P+ ++R+ +P + +
Sbjct: 6 YIVGGWVRDKLLTELGHPIQSNDKDWVVTGATPEEMLRL------NFVPVGNDF--PVFL 57
Query: 84 CRKKYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKVIDYV 139
K + + R++ + Y + + D LRRD T+NA+ D++G +ID
Sbjct: 58 HPKTHEEYALARTERKSGHGYKGFTFFADPSVTLEQDLLRRDLTVNAMAMDEEGHLIDPY 117
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GL 197
GG DL+ ++ + ED LR+LR RF A I + + + +
Sbjct: 118 GGFEDLKKGVLRHV---SAAFEEDPLRVLRVSRFRAKLPWFRIAEETKAMLKRMVESGEV 174
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
L ER+ +EI K L+ P + G ++ + ++ L +
Sbjct: 175 DALVPERVTAEIRKALKEAKPSIFFDELETNGFMGRVYPEWKQTELSR 222
>gi|146281113|ref|YP_001171266.1| tRNA nucleotidyl transferase [Pseudomonas stutzeri A1501]
gi|145569318|gb|ABP78424.1| tRNA nucleotidyl transferase [Pseudomonas stutzeri A1501]
Length = 465
Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 67/381 (17%), Positives = 128/381 (33%), Gaps = 37/381 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ +V ++D P+ + + P + + +
Sbjct: 76 QIYKVGGAVRDRLLGRAVSEVDWVVVGATPEVMQAL------GFRPVGADF--PVFLHPQ 127
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D RRD TINA+ D+QG++ID GGL
Sbjct: 128 SGEEYALARTERKSGRGYGGFTFHASPEVTLEEDLQRRDLTINAIAEDEQGQLIDPYGGL 187
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ R ++ + ED LR+LR RF A Y E + +
Sbjct: 188 RDLQARLLRHV---SPAFAEDPLRVLRVARFAARYTELGFRIADETLELMRQLARSGELS 244
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ---VIEAEQV 255
++ER W EI++ L P I + E+F ++ +Q + ++ A +
Sbjct: 245 ALTAERSWKEISRALMEPRPDVFIQVLQACHALPELFPELAASFEEQSAHGEALLGALRR 304
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
L + S + + + +C
Sbjct: 305 CAKHAQPLPVRWACLLLGSAGPAASQEARLQAIAALNQCCKAPRDCQELAMLFGRYHQDA 364
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL--------TG 367
L + + ++ + ++ + +PL + T
Sbjct: 365 LDARTLPAEALLDMLQHFDIYRRPERFEHFIAACEMTAPADGAAQPLPQVDYLRAAAKTA 424
Query: 368 DD-----VVKYGIPPGKKVGN 383
+ +++ G G ++G
Sbjct: 425 REVAIKPLLEQGHQ-GAELGK 444
>gi|310722554|ref|YP_003969377.1| hypothetical protein phiAS5_ORF0088 [Aeromonas phage phiAS5]
gi|306021397|gb|ADM79931.1| hypothetical protein phiAS5_ORF0088 [Aeromonas phage phiAS5]
Length = 351
Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 55/364 (15%), Positives = 106/364 (29%), Gaps = 33/364 (9%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD +M + +D D + + +M + +
Sbjct: 3 IYLVGGAVRDMVMGVEPKDRDYVVVGATHEDMMEA------GYQKVGADFP---VYLDDL 53
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ T Y V + + D RRDFT+NA+ + G V+D GG
Sbjct: 54 GQEYALARTERSTGKGYNDFVTDFNPRVTLEEDLKRRDFTMNAMALNFNGVVVDPYGGQK 113
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203
D++ I + H ED +R R RF A Y + + +
Sbjct: 114 DIKAGVINVV--NEHAFHEDPVRAFRACRFGARYDM---RLSEMTIECIDRCIEDGRMAH 168
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
I K E ++ + + L + +A+ + ++ +L
Sbjct: 169 LTTERIWKEYEKAFGPKFSEFIFLTKVTGVDQALGYNLEYGNLRYLRQADPLLQFASVAL 228
Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-FNCNFNQKTLSIPEIKKLFYLYGD 322
+ K + N +++ + K +
Sbjct: 229 ASDMAPFYKVAKVPSDYKKFAMIAAKFFVPMGEKIDHNADYSSIVYHMLNATKDKFREEL 288
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVG 382
+I T + I + + + GI G ++G
Sbjct: 289 FELIDLTHWVDLNDVFRFTKEKLKKIEKAFDSVTSEQYS------------GI-SGPELG 335
Query: 383 NILV 386
+
Sbjct: 336 KAIQ 339
>gi|68466285|ref|XP_722917.1| potential tRNA CCA-pyrophosphorylase [Candida albicans SC5314]
gi|68466576|ref|XP_722770.1| potential tRNA CCA-pyrophosphorylase [Candida albicans SC5314]
gi|46444767|gb|EAL04040.1| potential tRNA CCA-pyrophosphorylase [Candida albicans SC5314]
gi|46444924|gb|EAL04196.1| potential tRNA CCA-pyrophosphorylase [Candida albicans SC5314]
Length = 547
Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 64/358 (17%), Positives = 119/358 (33%), Gaps = 26/358 (7%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK--------------TR 67
N + I GG VRD L+ DIDIA + + +
Sbjct: 49 NNDSLELRITGGWVRDKLLGNESHDIDIAVNHLTGEEFVNGLHDYLRQHEPELSMNHVHT 108
Query: 68 YKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
K+ P + T D LRS+ T + + D++RRD T+NA
Sbjct: 109 IKMNPEKSKHLETCTTKLFGVDIDFVNLRSEEYTHDSRVPSIEFGTPEQDAVRRDATLNA 168
Query: 127 LYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
L+ + I+ GL+DL+N +K L+D LRI+R RF + +
Sbjct: 169 LFYNLNQGEIEDYTKRGLSDLQNGILKTPLAPIKTFLDDPLRIIRLIRFASKFNFVVESE 228
Query: 185 DGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYN------GGIFKEIFL 236
+ K +S ERI E+ K+L + NP + + E+
Sbjct: 229 TLNAMKEEHNKSALSTKISKERIEIELRKILTSNNPGYGLQLINYVDLASSIFYVPELAK 288
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ SL++ + I + + S + K+ + + + + +
Sbjct: 289 EFDNESLEEARSQLACHMEIASLIYPNFKQTINNSTEKFKNEFAALMTNDDYKNVFWLSV 348
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ +I + G + + A++ N+ +++
Sbjct: 349 ILHPYTNVKSCKPNRDIFNQYLRLGLTSKKSDIAKVSAINMNSAELSRFFSAPELVKR 406
Score = 45.6 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKK-----PLFPLTGDDV-VKYGIPPGKKVG 382
KI + N + + + I +W + G + G+ PG +
Sbjct: 455 EKILGDENINKVISEIVSRYENLFVQIENWDLTNVHLVKPLIDGTTLSKSLGMKPGPWLR 514
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ +++ Q S ++ ++ +I
Sbjct: 515 PTIEEILVWQLDNP-QSSVDECFEFVKSII 543
>gi|50085387|ref|YP_046897.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Acinetobacter sp. ADP1]
gi|73619734|sp|Q6FA38|CCA_ACIAD RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|49531363|emb|CAG69075.1| tRNA nucleotidyl transferase [Acinetobacter sp. ADP1]
Length = 413
Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 117/344 (34%), Gaps = 21/344 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + D + P +++ P + + K
Sbjct: 2 QVYLVGGAVRDHLLGHPYHEKDYVVVGASPQQLLD------QGFSPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLIT-DGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + G + FT + D +RRD TINA+ DQ G V D GG
Sbjct: 54 TKEEYALARTERKSGIGYHGFNFFTDPDVSLEDDLIRRDLTINAMAMDQDGNVYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLK 198
DL R ++ + +ED LR+LR RF A Y + SI L+
Sbjct: 114 KDLEQRILRHV---SDAFIEDPLRVLRVARFAARYARYGFKIADETLLLMQSITQTGELE 170
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
L++ER+W E ++ L + K +F ++ + E
Sbjct: 171 SLTAERVWKETSRALMEDQADIYFDVLRQCHALKVLFPEIDALFGVPQRPEYHPEIDCGI 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
LR S ++ ++ + + + + E+
Sbjct: 231 HTLMSLR-QACKSNYSLDVRYAVLVHDLGKALTPKDILPRHIMHEERGLIPVEELSNRLK 289
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +A L + + ++L + ++P
Sbjct: 290 IPTQMKQLALAVCKEHLKCHQAMSLKPGTLWRLLQRLDVLRRPE 333
>gi|312880840|ref|ZP_07740640.1| Polynucleotide adenylyltransferase region [Aminomonas paucivorans
DSM 12260]
gi|310784131|gb|EFQ24529.1| Polynucleotide adenylyltransferase region [Aminomonas paucivorans
DSM 12260]
Length = 391
Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 66/355 (18%), Positives = 118/355 (33%), Gaps = 31/355 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
+ + L++ + +VGGAVRD L+ + D D+AT P+ + +F R P
Sbjct: 7 ALELARTLSRLGHPAVLVGGAVRDLLLGRTPHDGDLATAAPPEALEALFPSLRRLDRP-- 64
Query: 75 ISYGTIKIICRK----KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
G + + ++T + D RRD T+NAL D
Sbjct: 65 ---GGTTFLLPGPEGLLHETVSTFPGT---------------LQDDLARRDLTVNALALD 106
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+G ++D GG DL ++F G+ R+ ED LR LR RF A D +
Sbjct: 107 PRGLLLDPTGGREDLLAGRLRFTGEGADRLREDPLRALRLARFAAQMPGFAPTPDAVRCC 166
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIV--HMYNGGIFKEIFLDVQEISLDQLSQ 248
+ L L R E+ + L P + + + + L +
Sbjct: 167 REFAFPLGTLPPGRRGGELWRALGTD-PARFLRWVRLLGLRDPFPELPPLPASAPPFLRR 225
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
+ +LL + QD + PR L++ + + +
Sbjct: 226 TCARTSDPVARAAALLE---TLPPQDPPAPAETLLSLGWPRGALRDLLALLSLPRDGEIP 282
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363
P ++ + + L + +L + L + +P
Sbjct: 283 DTPAARRPLRQASPENLRRWL-LLDSLRDAAPSPNRRALREAALRRLALPSRPSL 336
>gi|169806160|ref|XP_001827825.1| tRNA nucleotidyltransferase-polyA polymerase [Enterocytozoon
bieneusi H348]
gi|161779273|gb|EDQ31296.1| tRNA nucleotidyltransferase-polyA polymerase [Enterocytozoon
bieneusi H348]
Length = 438
Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 87/431 (20%), Positives = 159/431 (36%), Gaps = 45/431 (10%)
Query: 17 NILSLLNKGEDKS------CIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYK 69
I++LL I GG VRD L+ D+DIA I +
Sbjct: 9 KIINLLKDYSQTLIPPVIPRIAGGWVRDKLLGKKTNDMDIALDNITGIQFATGLISYIGI 68
Query: 70 VIPTSI--------SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
I + T I D LR++ T R ++ + D+ RR
Sbjct: 69 DIHVGKIMANPKKSKHLETAVIHLFGLTIDFVHLRTESYTTSRIPQITHGTPQE-DAYRR 127
Query: 121 DFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
D TINAL+ + I+ G DL+N+ I + + +L+D LRILR FRF +
Sbjct: 128 DITINALFYNLVTNEIEDFTGKGLYDLQNKIIDTPLNPNVTLLDDPLRILRIFRFSVKFN 187
Query: 179 EKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
K D + +S ERIW+E+ +L +N + + G + I
Sbjct: 188 FKINDRIYNAIKHDNIRIAFSTKISCERIWNELFTMLNYENGYLGLAKLSEGDFIEPILK 247
Query: 237 DVQEIS-----LDQLSQVIEAEQVFEWKIDSLLRFIVL-----ISWQDKKSILSMAKKFS 286
I ++++ + + ++ ++ L I+ +D + + +AK
Sbjct: 248 HKNSIEKVMSFINKIQKWLIPPKINNEQVLLRLYIILHEFSGIYCGKDFLACILIAKALK 307
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIK------KLFYLYGDKVMIAKLKIFLALHYNNL 340
P+ + + KT+++ + +L G + + + + N+
Sbjct: 308 PPKYFIRNINAIELNLLYLKTINLNDFDLLRIQIELIIECGKLWKESLIVFYGMGNTINI 367
Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNI---LVHCKQEWINSSF 397
+ L + + F + G+D+ I P K V I L CK I +
Sbjct: 368 ENIFLNIFNNHLEE--RCFRKQFKINGNDIK--NIIPEKHVSKISNYLKKCKVLEIENEC 423
Query: 398 QLSQEDLHHLL 408
LS++++ ++
Sbjct: 424 -LSKKEILDIV 433
>gi|242279512|ref|YP_002991641.1| polynucleotide adenylyltransferase region [Desulfovibrio salexigens
DSM 2638]
gi|242122406|gb|ACS80102.1| Polynucleotide adenylyltransferase region [Desulfovibrio salexigens
DSM 2638]
Length = 387
Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 21/220 (9%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81
K I GG++RD L+ S +D+D + + P+ + F K R P SY
Sbjct: 4 KNNNLKILIAGGSIRDLLLGRSPKDLDYLIASGSPEEFLAAFPKAR----PVGKSY---- 55
Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141
+I L+ + R D RDFT+N+ D+ G++ + G
Sbjct: 56 --------EIFYLKGLEFSFPRAKGNNTDETIDLDLKARDFTVNSFALDEDGELYAHPNG 107
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKI 199
L DLRNR ++ ED LR+ R F + + E + + + + L
Sbjct: 108 LEDLRNRVLRPSFP--DTFKEDPLRVFRAATFISRFPEFSPHPELIAEMKRCADNDWLAD 165
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
++ +RI E+ K L P N + + G + F +
Sbjct: 166 IAPDRIGVELRKALSGPKPGNFLRLLIQGNCLEPWFSEFN 205
>gi|294649931|ref|ZP_06727323.1| tRNA adenylyltransferase [Acinetobacter haemolyticus ATCC 19194]
gi|292824160|gb|EFF82971.1| tRNA adenylyltransferase [Acinetobacter haemolyticus ATCC 19194]
Length = 409
Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 67/410 (16%), Positives = 135/410 (32%), Gaps = 72/410 (17%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + D + PD+++ P + + K
Sbjct: 2 QVYLVGGAVRDQLLGHPYHEKDYVVVGATPDQLLAE------GYQPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D +RRD TINA+ D G+V D GG
Sbjct: 54 TKEEYALARTERKSGVGYHGFQFFTDADVSLEEDLIRRDLTINAMAMDANGQVYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL + ++ + H ED LR+LR RF A Y + +
Sbjct: 114 KDLEQKILRHV---SHAFTEDPLRVLRVARFAARYESYGFKIADETLHLMREIAKSGELN 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------------- 241
+ ER+W E + L + + K +F ++ +
Sbjct: 171 ELTPERVWKETARALMEDHADVYFKTLRECHALKILFPEIDALFGVPQRPEYHPEIDCGI 230
Query: 242 -SLDQLSQVIEAEQVFEWKIDSLLR-------------FIVLISWQDKKSILSMAKKFSL 287
+L L Q +A+ + + L+ V+ + + + + + +
Sbjct: 231 HTLMALQQACKADYALDVRFAVLVHDLGKALTPAEELPRHVMHEERGMQPVTVLCDRLKV 290
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA------------L 335
P ++ ++ + + I + L+ ++ + + A L
Sbjct: 291 PTHLKNLALTVCKEHLKCHQVQILKPGTLWRFLQRLDVLRRPEKVRAFVQACECDARGRL 350
Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385
+ + FIL + + + + P + G ++G +L
Sbjct: 351 GMEDRPYPQAQFILNAMDIVRNIRAQDLP--------EHVK-GPEIGEML 391
>gi|254567906|ref|XP_002491063.1| ATP (CTP):tRNA-specific tRNA nucleotidyltransferase [Pichia
pastoris GS115]
gi|238030860|emb|CAY68783.1| ATP (CTP):tRNA-specific tRNA nucleotidyltransferase [Pichia
pastoris GS115]
gi|328352411|emb|CCA38810.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Pichia pastoris
CBS 7435]
Length = 520
Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 80/454 (17%), Positives = 142/454 (31%), Gaps = 85/454 (18%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK------------------TRY 68
+ I GG VRD L+ S DIDIA + + +
Sbjct: 48 QLRITGGWVRDKLLGRSSHDIDIAINTLSGESFAEKLVSFIKENHKDEIESILSSSIHKI 107
Query: 69 KVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
P + T D LR++ T+ + + D+LRRD T+NAL
Sbjct: 108 NKNPDKSKHLETCTTKLYGIDIDFVNLRNEKYTEESRIPTIDYGTPQEDALRRDATLNAL 167
Query: 128 YADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNID 183
+ + I+ GL DL+ ++ + L+D LR LR RF + +G
Sbjct: 168 FYNLTTDQIEDFTEKGLIDLKQGVLRTPLEPSKTFLDDPLRCLRLIRFASVFGFSVSEDA 227
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM---------YNGGIFKEI 234
+ + +S ERI EI+K+L +K+P+ + + +N G ++
Sbjct: 228 LQAMKQPKIKEALNAKISRERIGVEIDKILVSKDPIRGLKILRDTNLLDAIFNFGDLQDA 287
Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP------ 288
++ ++L+QV S L ++ D KS+ S L
Sbjct: 288 VYELNPKVRERLNQVFTIYLPESASKISSLPQLIQQFPDDLKSVYSQLDLRVLYLNLLLY 347
Query: 289 --------------REIRYFLISFFN-----------------------CNFNQKTLSIP 311
+ RY + Q+ +S
Sbjct: 348 PFAQLRLKFSTKPTKNTRYATEMIVRDGLKYSSKDSDTVSLIVDNYQEFQHLVQRDVSTL 407
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP--------LF 363
L +L + + L + D+ I + S H K
Sbjct: 408 PRSVLGMAIRKYNGQWELNLIICLLLSIFEGADSNAIEKYHSTYQHIKNQDLSQVHSLRP 467
Query: 364 PLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSS 396
+ G + + G PG + ++ ++
Sbjct: 468 LVDGKTLCKELGKKPGPWMKPLMDKLLVWQLDHP 501
>gi|257455264|ref|ZP_05620499.1| multifunctional CCA protein [Enhydrobacter aerosaccus SK60]
gi|257447226|gb|EEV22234.1| multifunctional CCA protein [Enhydrobacter aerosaccus SK60]
Length = 393
Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 66/405 (16%), Positives = 130/405 (32%), Gaps = 56/405 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD ++ V + D + P++++ + + + +
Sbjct: 2 QVYLVGGAVRDYVLAREVTEHDYVVVGATPEQMLEL------GFSQVGADF--PVFLHPR 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFT----RDWKADSLRRDFTINALYADQQ---------- 132
+ + R++ + Y + D RRD TINA+ +
Sbjct: 54 THDEYALARTERKSGNGYLGFNVHADAAVTLEEDLARRDLTINAMAIEVNGLFDCGFKQG 113
Query: 133 -GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-- 189
D + L + K + ED +R+LR RF + Y D
Sbjct: 114 KFDARDIIDPYGGLADIQQKKLRHVSIAFAEDPVRVLRLARFASRYAPLGFTVDESTTKL 173
Query: 190 --SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+KA L L +ER+WSE +K L P +Y + I + + S D
Sbjct: 174 TSQMKAAGELSHLVAERVWSETSKALTQAWPDIYFDTLYQLNVLDVIMPKLYQASNDNPK 233
Query: 248 QV------------IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
Q +A+ + ++ + + L + +P+
Sbjct: 234 QWQLMLSALRMAGEQQADNLIKFALVATCFKSDQQLNNPTTEYLEFCQGLKVPKNTERLG 293
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC--FILQVLS 353
+ + K F + + L++ +L +L Q + Q +
Sbjct: 294 LFILEH---------FDKLKNFDHLTAEQLFELLRLTNSLKDTSLLEQALQVVHLYQQVK 344
Query: 354 D---IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395
+ K L ++ DV GK +G + + + +
Sbjct: 345 QTALLATIKTQLTQISAKDVASE--LTGKHIGEAIDKLRLQKLEE 387
>gi|242277497|ref|YP_002989626.1| metal dependent phosphohydrolase [Desulfovibrio salexigens DSM
2638]
gi|242120391|gb|ACS78087.1| metal dependent phosphohydrolase [Desulfovibrio salexigens DSM
2638]
Length = 441
Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 62/454 (13%), Positives = 149/454 (32%), Gaps = 57/454 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQD------IDIATTILPDR 58
+ + D + I + + + I + + L L+++D +DI+T + R
Sbjct: 1 MSEPF---KDAVGICKTIMRNGYDAYI----INERLQKLTIEDKGEEVELDISTDLDFKR 53
Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
+ ++F + PT T + F T + + T
Sbjct: 54 LAKLFPN----IQPTEQQDVTAILREGGNIFYFYTSETSNSSHPEECVSRMTPRLLKALE 109
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
++ + K D G +L + ++ +G + +DYL +R RF A+Y
Sbjct: 110 QQHQIPMSAACPYIPKAQDPYEGFAELSSGEVRLLGIPDQTLKKDYLMGIRALRFAANYN 169
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ + K+ L + I E K+ + ++ + + ++
Sbjct: 170 LPIETNTKIAIIRSCKRILDYVPVPEIMDEWRKVEAENM-YVFVSLLFETMLLHGLIPEL 228
Query: 239 QEISLDQL---SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK------------ 283
+S S+ E E VF +D + + + + + M
Sbjct: 229 AALSRLTQVKNSKTGETEDVFTHTLDVMRLYPEELPYDWFGVVACMFHDVGKLYTAEEVD 288
Query: 284 ---------------------KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
+ + P+E + + + + + F D
Sbjct: 289 GRWQFLQHHRVGAKVTRKILTRLNFPQEDVDLICDLVRNHMRFHFMLTDKGIRKFKAL-D 347
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP-LTGDDVVKY-GIPPGKK 380
+ + + + T+++ +++L ++ L P L G++++++ G+ PG
Sbjct: 348 EYPRLIEMVRADIKARDTTYKEFNHNIKMLERADIPEEALDPFLNGNEIMQHTGLKPGPG 407
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
VG I + I+ E + +++ + S
Sbjct: 408 VGIIRESLLKAQISGDVTNMDEAIEYVIDQAKKS 441
>gi|172061982|ref|YP_001809634.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia ambifaria MC40-6]
gi|226702040|sp|B1YPB3|CCA_BURA4 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|171994499|gb|ACB65418.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia ambifaria MC40-6]
Length = 413
Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 69/349 (19%), Positives = 118/349 (33%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P++++ ++ P + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQMVA----QGFR--PVGKDF--PVFLHPDT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ R++ T Y F D RRD TINA+ + + VID
Sbjct: 55 QEEYALARTERKTAAGYHGFQFYFAPDVTLDEDLARRDLTINAMAREVSPEGALVGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
G DLR R + +GDA +ED +RILR RF A + + + D L +
Sbjct: 115 PFDGQADLRARVFRHVGDA---FVEDPVRILRIARFAARFADFTVADDTLALMRRMVDAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
L +ER+W EI + L P + G + +V + E
Sbjct: 172 EADALVAERVWQEIARGLMEAKPSRMFAVLRECGALARVLPEVDALWGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + S+ + + + S+ IK
Sbjct: 232 TGVHVMMVVDYAAKQG----YSLPVRFAALTHDLGKATTPADVLPRHVGHEGRSVELIKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL +++ +KP
Sbjct: 288 LCERLRVPNDCRDLALVVAREHGNLHRVMEMGAAALVRFFERSDALRKP 336
>gi|76363838|ref|XP_888630.1| possible tRNA nucleotidyltransferase precursor [Leishmania major]
gi|12311845|emb|CAC22663.1| putative tRNA nucleotidyltransferase [Leishmania major strain
Friedlin]
Length = 523
Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 58/252 (23%), Positives = 98/252 (38%), Gaps = 31/252 (12%)
Query: 13 SDLINILSLL------NKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-------ILPDRV 59
++ L NK + + GG VRD L+ L DIDIA + +
Sbjct: 14 PAHQSVFDFLLSVAAENKLKATLRVAGGWVRDMLLGLHSNDIDIAIETHAGAKIVTGEAF 73
Query: 60 MRIFSK------------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAK 106
S+ + + P + T + + ++ LR+D+ T+
Sbjct: 74 AHRVSEYQLAHGGRGHTVSVIRANPALSKHIETATVRVHEIPVELCALRTDVYTNESRIP 133
Query: 107 VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL-NDLRNRTIKFIGDAHHRILEDYL 165
V D+ RRDFTINAL+ + +++ DLR R I+ + ++D L
Sbjct: 134 QVRPAAPVEDAQRRDFTINALFYNLHTGMVEDYTTGLEDLRLRIIRCPLEPRTTFMDDPL 193
Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKA----KKGLKILSSERIWSEINKLLEAKNPLNA 221
R+LR RF G N D + S + + +S ER+ E K++ A +P
Sbjct: 194 RLLRGVRFVGQLGALNFSLDESITSCVDDSLLQVLQQKVSRERVGKEFVKMMAAAHPERC 253
Query: 222 IVHMYNGGIFKE 233
I ++ I +
Sbjct: 254 IALLHGMHILQH 265
>gi|322488104|emb|CBZ23351.1| putative tRNA nucleotidyltransferase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 523
Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 58/253 (22%), Positives = 96/253 (37%), Gaps = 31/253 (12%)
Query: 12 DSDLINILSLL------NKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-------ILPDR 58
++ L NK + + GG VRD L+ L DIDIA + +
Sbjct: 13 SPAHQSVFDFLLNVAAENKLKATLRVAGGWVRDMLLGLHSNDIDIAIETHAGTKLVTGEV 72
Query: 59 VMRIFSK------------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYA 105
S+ + + P + T + + + LR+D+ T
Sbjct: 73 FAHRVSEYQLAHGGRSHTVSVIRANPALSKHIETATVRVHEIPVEFCALRTDVYTSESRI 132
Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL-NDLRNRTIKFIGDAHHRILEDY 164
V D+ RRDFTINAL+ + +++ DLR R I+ + ++D
Sbjct: 133 PQVRPAAPLEDAQRRDFTINALFYNLHTGMVEDYTTGLEDLRLRIIRCPLEPRTTFMDDP 192
Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKA----KKGLKILSSERIWSEINKLLEAKNPLN 220
LR+LR RF G N D + S + +S ER+ E K++ A +P
Sbjct: 193 LRLLRGVRFVGQLGALNFSLDESITSCVDDSLLDVLQQKVSRERVGKEFVKMMVAAHPER 252
Query: 221 AIVHMYNGGIFKE 233
I +++ I +
Sbjct: 253 CIALLHDMHILQH 265
>gi|304437430|ref|ZP_07397389.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369686|gb|EFM23352.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 410
Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 66/417 (15%), Positives = 125/417 (29%), Gaps = 46/417 (11%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD-RVMRIFSKTRYKVIPTSISY 77
++ L VGG VRD++ + +D+D T L + +F + +
Sbjct: 7 VAELRGAGAHVFRVGGCVRDAVRGVPPKDVDYVVTGLTEAEFCVLFPRAE----KIGKGF 62
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQG 133
+ ++ R + T Y T D + D RRD T+NA+ +
Sbjct: 63 PVYHVRIGGVRSEVAFARRERKTGAGYRGFDVTFDPTVTIEEDLYRRDTTMNAMAVELPA 122
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+ G I LED +R LR R A +G + + A
Sbjct: 123 GTLLDPYGGQADLAAGIIRA--VSPHFLEDPVRALRAARQAAEFGYTVEEKTLALMRACA 180
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
++ S + + + L P + + F +V + E
Sbjct: 181 EELQHEPSERLMGE-LRRALMTPRPSVFFRVLRAADLLTVTFPEVAALIGQTQPTEFHPE 239
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN---------FN 304
++L + S ++A R + L + +N
Sbjct: 240 GDAYAHTMAMLDVVAERSDNIIVRFAALAHDLGKGRTPQEMLPHHYRHEETGLEALASWN 299
Query: 305 QKTLSIPEIKKLFYLYGDKVMIA--------KLKIFLALHYNNLTHQDTCFIL------- 349
Q+ + KK + M A + + + + L+ D ++
Sbjct: 300 QRMTLPHDWKKAAAFVIRQHMRAPRLTHPGKIVDLLFGIESSGLSVTDFNVVIRADHGSL 359
Query: 350 -QVLSDIIHWKKPLFPLTGDDVVKYGIPP---GKKVGNILVHCKQEWINSSFQLSQE 402
+ L + + +TG D PP G ++G L + L +E
Sbjct: 360 PRYLRCGEAYLAAMRTVTGRD-----APPALRGAEIGAWLRTAHIAILK-KLLLEKE 410
>gi|297623000|ref|YP_003704434.1| polynucleotide adenylyltransferase region [Truepera radiovictrix
DSM 17093]
gi|297164180|gb|ADI13891.1| Polynucleotide adenylyltransferase region [Truepera radiovictrix
DSM 17093]
Length = 413
Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 55/380 (14%), Positives = 115/380 (30%), Gaps = 40/380 (10%)
Query: 15 LINILSLLNKG-------EDKSCIVGGAVRDSLMNL--SVQDIDIATTI-LPDRVMRIFS 64
+L+ + + +VGG VRD+L+ +V+D+D+ + R
Sbjct: 21 ARRLLAAVTQHALSERFRGRALYLVGGTVRDALLGELAAVRDLDVLVEGGDAAPLGRALQ 80
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ V+ ++ T + + D+ T R + V D RRDF++
Sbjct: 81 RDLGGVLSCHEAFLTCTLRLEELELDLATARRERYAHPGALPTVEAAPLADDLERRDFSV 140
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHH-RILEDYLRILRFFRFFAHYGE-KNI 182
N + L + + + H +D R++R R A G +
Sbjct: 141 NTFALRLAPAPRLLLSVPGALEDLRARRLRTLHPASFCDDPTRLVRGSRLAARLGFAYDA 200
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ A + + +S ER+ E+ L A+ H+ G +
Sbjct: 201 FTAAQAARALRARAHEQVSPERLKHELLLTLAEPRVAPALEHLAMQGKAQGEAPGA---- 256
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
++ + + + + + S
Sbjct: 257 ---------LWALYGLRTTPWVGELDALRSRHPVPAESYLIVLLGALSESELAAHQRRMG 307
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ ++ +S + L + + F L+ + +
Sbjct: 308 WPKRLVS---------------ARRRFLAALRGEALDRGSEAEHFALKAARPELAAQLER 352
Query: 363 FPLTGDDVVKYGIPPGKKVG 382
L+G+DV+ G+P G VG
Sbjct: 353 PLLSGEDVLNLGLPAGPHVG 372
>gi|154299760|ref|XP_001550298.1| hypothetical protein BC1G_11506 [Botryotinia fuckeliana B05.10]
gi|150857196|gb|EDN32388.1| hypothetical protein BC1G_11506 [Botryotinia fuckeliana B05.10]
Length = 516
Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 72/478 (15%), Positives = 131/478 (27%), Gaps = 87/478 (18%)
Query: 24 KGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRV----------MRIFSKTRYKVIP 72
+ + + GG VRD L+ + DIDIA + K +
Sbjct: 33 EKKVELRWAGGWVRDKLLGIQSHDIDIAINVMTGQNFGLKVREYLEDAENLKKHGLEAKD 92
Query: 73 TSISYG------------TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
Y T + D LR + T+ + + D+LRR
Sbjct: 93 VKKLYKIAANPEKSKQLETATTNIFQFDVDFVNLRKETYTEDSRNPEMEFGTAEEDALRR 152
Query: 121 DFTINALYADQQGKVIDYVGGL-NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
D TINAL+ + +++ G D++ + IK + + +D LR+LR RF +
Sbjct: 153 DATINALFYNLHTDILEDFTGGLADMKAKLIKTPLEPYTTFKDDPLRVLRLIRFASRLDF 212
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIW-----SEINKLLEAKNPLNAIVHMYNGGIFK-- 232
K S A L R ++ K LN +
Sbjct: 213 KIDSEAEDCMSNPAIMEALRLKISRERVGVEVEKMLKGNNPWLSLNYFDRLGIYSTIFTD 272
Query: 233 --EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS------------- 277
+ + S ++ E DS+ + +V +
Sbjct: 273 PTAHEIPAPDTSSWRIVYDCLKEMTLNETPDSIYKSLVRSDDAKYLAWILAALAPWTAIP 332
Query: 278 -------------------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
S +Y I+ + + E
Sbjct: 333 PAQAAKPGGKTPPPYGALVAREGLKAESKLCNMVAGAFKQYAEITELKDAIKRNDSYVHE 392
Query: 313 IK---KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP----- 364
+ + KL++ AL +L + + + S+ + L
Sbjct: 393 RDTVGMMIRKWESHGGQWKLQVLFALLVESLKLESSEEYRTLFSEWQKFIDHLKDLDVME 452
Query: 365 -------LTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ G + G+ PG + L C + + + E +RK
Sbjct: 453 APAIRGIVDGKILSKALGVKPGIWMAPALNVCMEWQLRNPDSTDTEAAIEEVRKRKEE 510
>gi|161621311|ref|YP_560782.2| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia xenovorans LB400]
Length = 410
Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 60/346 (17%), Positives = 123/346 (35%), Gaps = 25/346 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P++++ Y+ P + + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQMVA----QGYR--PVGKDF--PVFLHPQT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ + R++ T Y F + D RRD TINA+ + + VID
Sbjct: 55 HEEYALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KK 195
G DL+ R + + LED +RILR RF A + + + + L K
Sbjct: 115 PFNGQGDLQARLFRHV---SDAFLEDPVRILRIARFAARFVDFTVAPETLALMRKMVADG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L +ER+W E+++ L + P + G I ++ + E
Sbjct: 172 EVDALVAERVWQEVSRGLMERKPSRMFGVLRECGALARILPEIDALFGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + ++ ++ + + + + +
Sbjct: 232 TGVHVMMVVDHAAQQGYTLPVRFAALTHDLGKA-TTPEDVLPRHIGHEGRSVDLLKPLCE 290
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ D +A L + + + +++++ +KP
Sbjct: 291 RLRVPNDCRDLALLVAREHGNIHRVMEMGAAALVRLIERCDAIRKP 336
>gi|91689530|gb|ABE32730.1| tRNA nucleotidyltransferase [Burkholderia xenovorans LB400]
Length = 412
Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 60/346 (17%), Positives = 123/346 (35%), Gaps = 25/346 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P++++ Y+ P + + +
Sbjct: 5 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQMVA----QGYR--PVGKDF--PVFLHPQT 56
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ + R++ T Y F + D RRD TINA+ + + VID
Sbjct: 57 HEEYALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVID 116
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KK 195
G DL+ R + + LED +RILR RF A + + + + L K
Sbjct: 117 PFNGQGDLQARLFRHV---SDAFLEDPVRILRIARFAARFVDFTVAPETLALMRKMVADG 173
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L +ER+W E+++ L + P + G I ++ + E
Sbjct: 174 EVDALVAERVWQEVSRGLMERKPSRMFGVLRECGALARILPEIDALFGVPQRADYHPEVD 233
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + ++ ++ + + + + +
Sbjct: 234 TGVHVMMVVDHAAQQGYTLPVRFAALTHDLGKA-TTPEDVLPRHIGHEGRSVDLLKPLCE 292
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ D +A L + + + +++++ +KP
Sbjct: 293 RLRVPNDCRDLALLVAREHGNIHRVMEMGAAALVRLIERCDAIRKP 338
>gi|326566838|gb|EGE16977.1| tRNA nucleotidyltransferase [Moraxella catarrhalis 103P14B1]
gi|326576752|gb|EGE26659.1| tRNA nucleotidyltransferase [Moraxella catarrhalis 101P30B1]
Length = 389
Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 74/347 (21%), Positives = 127/347 (36%), Gaps = 48/347 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+++ L + D D P ++ + I + + + K
Sbjct: 2 QVYLVGGAVRDAVLGLPITDKDFMVVGATPQVLLDL------GFIQVGVDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYA---------DQQG 133
+ R + + + + + D +RRD TINAL G
Sbjct: 54 TQAEYALARIERKSGVGHTAFQVHADPSVRLEEDLIRRDLTINALAIEVKGLFDETPMTG 113
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VA 189
KVID+ GGL D++NRT++ + ED LR+LR RFFA + +
Sbjct: 114 KVIDFYGGLTDIQNRTLRHV---SPAFSEDPLRVLRVARFFARFAPLGFSIHDSTAKLMQ 170
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---SLDQL 246
I + LS ER++SE K + I ++ I I + + ++
Sbjct: 171 DIAKSGEMSSLSRERLYSEFVKAMRQPQGDQFIACLHQLDILPFILPTLAQHFNTPQNRQ 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ RF +L+S K + + + P+ IR F+ F +C+
Sbjct: 231 RTFTRLAYTCTLNLPIFSRFAMLLSDLPKDDLSDCLDRLNAPKSIRQFIQIFNHCHDTLI 290
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353
TL L L H+D+ ++Q+
Sbjct: 291 TLPNISG----------------NALLELLERTQAHKDSTKLIQLYD 321
>gi|78067847|ref|YP_370616.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia sp. 383]
gi|123567439|sp|Q39C44|CCA_BURS3 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|77968592|gb|ABB09972.1| metal dependent phosphohydrolase [Burkholderia sp. 383]
Length = 413
Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 64/349 (18%), Positives = 116/349 (33%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P+++ ++ P + + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQMAA----QGFR--PVGKDF--PVFLHPRT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ R++ T Y F D RRD T+NA+ + + VID
Sbjct: 55 QEEYALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTVNAMAREVSPEGELVGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
G DLR R + + +ED +RILR RF A + + + + L +
Sbjct: 115 PFDGQADLRARVFRHV---SDAFVEDPVRILRIARFAARFADFTVADETLALMRRMVDAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L ER+W EI + L P + G I +V + E
Sbjct: 172 EVDALVPERVWQEIARGLMEAKPSRMFAVLRECGALARILPEVDALWGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + S+ + + + S+ +K
Sbjct: 232 TGVHVMMVVDYAAKQG----YSLPVRFAALTHDLGKATTPADVLPRHVGHEGRSVDLLKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++ +KP
Sbjct: 288 LCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRLFERSDALRKP 336
>gi|115353127|ref|YP_774966.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia ambifaria AMMD]
gi|122322023|sp|Q0BB41|CCA_BURCM RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|115283115|gb|ABI88632.1| metal dependent phosphohydrolase [Burkholderia ambifaria AMMD]
Length = 413
Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 68/349 (19%), Positives = 117/349 (33%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P++++ ++ P + +
Sbjct: 3 IYAVGGAIRDDLLGVPVQDRDYVVVGATPEQMVA----QGFR--PVGKDF--PVFLHPDT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ R++ T Y F D RRD TINA+ + + VID
Sbjct: 55 QEEYALARTERKTAAGYHGFQFYFAPDVTLDEDLARRDLTINAMAREVSPEGALVGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
G DL R + +GDA +ED +RILR RF A + + + D L +
Sbjct: 115 PFDGQADLHARVFRHVGDA---FVEDPVRILRIARFAARFADFTVADDTLALMRRMVDAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
L +ER+W EI + L P + G + +V + E
Sbjct: 172 EADALVAERVWQEIARGLMEAKPSRMFAVLRECGALARVLPEVDALWGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + S+ + + + S+ IK
Sbjct: 232 TGVHVMMVVDYAAKQG----YSLPVRFAALTHDLGKATTPADVLPRHVGHEGRSVELIKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL +++ +KP
Sbjct: 288 LCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRFFERSDALRKP 336
>gi|171317271|ref|ZP_02906468.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia ambifaria MEX-5]
gi|171097532|gb|EDT42369.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia ambifaria MEX-5]
Length = 413
Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 65/346 (18%), Positives = 118/346 (34%), Gaps = 25/346 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P++++ ++ P + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQMVA----QGFR--PVGKDF--PVFLHPDT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ R++ T Y F D RRD TINA+ + + VID
Sbjct: 55 QEEYALARTERKTAAGYHGFQFYFAPDVTLDEDLARRDLTINAMAREVSPEGALVGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
G DLR R + +GDA +ED +RILR RF A + + + D L +
Sbjct: 115 PFDGQADLRARVFRHVGDA---FVEDPVRILRIARFAARFADFTVADDTLALMRRMVDAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
L ER+W EI + L NP + G I +V + E
Sbjct: 172 EADALVPERVWQEIARGLMEANPSRMFAVLRECGALARILPEVDALWGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + + ++ L + + I + +
Sbjct: 232 TGVHVMMVVDYAAKQGYSLPVRFAALTHDLGKATTPADVLPRHV-GHEGRGVELIKPLCE 290
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + +A + + + + +++ +KP
Sbjct: 291 RLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRFFERSDALRKP 336
>gi|121999109|ref|YP_001003896.1| metal dependent phosphohydrolase [Halorhodospira halophila SL1]
gi|166233858|sp|A1WZI2|CCA_HALHL RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|121590514|gb|ABM63094.1| metal dependent phosphohydrolase [Halorhodospira halophila SL1]
Length = 415
Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 67/409 (16%), Positives = 130/409 (31%), Gaps = 65/409 (15%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
VGGAVRD L+ V ++D P+ + Y+ P + + +
Sbjct: 4 YRVGGAVRDRLLGRPVDEVDWVVVGATPEAM----EAAGYR--PVGKDF--PVFLHPQTG 55
Query: 89 FDITTLRSDLIT-DGRYAKVVFTRDW---KADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ T G + + + D RRD TINA+ D G++ID GG D
Sbjct: 56 EEHALARTERKTAVGYHGFEFYAAPEVTLEQDLARRDLTINAMAEDAGGRLIDPFGGQVD 115
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL---- 200
L+ R ++ + DA ED +RILR RF A + + ++ +
Sbjct: 116 LQARQLRHVTDA---FAEDPVRILRLARFAARFADDGFVVADETMALCQRMVAAGEVDAL 172
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------------------- 241
ER+W E+ + L P I + G + +V +
Sbjct: 173 VPERVWQELARGLMEPTPRRMIEVLRQAGALARLLPEVDALFGVPQSPAHHPEGDAGTHT 232
Query: 242 ------------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289
SL+ V+ + L ++++ PR
Sbjct: 233 LMALDAAAAVDASLEARFAVLLHDVGKALTPAEALPRHPGHEEAGVDGARRVSERLKAPR 292
Query: 290 EIRYFLISFFNCNFNQK------TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
R + + + ++ E+ + L+ + +
Sbjct: 293 ACRDLAVLVTRWHMHAHRALELRPGTVVELFEGLDLFRRPERLEPFLHACLADDRGRGGR 352
Query: 344 DTCFILQ---VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
+ + + + ++ V+ G+ G +VG + +
Sbjct: 353 EASDWPAGDFLRAAFEACRG----VSARSFVEQGLR-GPEVGEAVREAR 396
>gi|116071505|ref|ZP_01468773.1| poly A polymerase family protein [Synechococcus sp. BL107]
gi|116065128|gb|EAU70886.1| poly A polymerase family protein [Synechococcus sp. BL107]
Length = 409
Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 58/381 (15%), Positives = 123/381 (32%), Gaps = 37/381 (9%)
Query: 31 IVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKIICRKK 87
+VGGAVRD+ + D+D+ R +KT K + +++
Sbjct: 46 LVGGAVRDAFLGRHNPHPDLDLVVRSDALRHSARLAKTFGGKHVVLDEQRDIARLVINGW 105
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG--KVIDYVGGLNDL 145
D+ + D RRD+++NAL Q + D GGL DL
Sbjct: 106 TIDVA--------------RQEGDGLEDDLWRRDYSLNALALPLQPLAPLCDPTGGLEDL 151
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
++ ++ + + + D L F +D+ + ++ L + + ERI
Sbjct: 152 KHGRLRAVREQNL---LDDPLRLLRGLRFLAEIPLVLDAQTGEWIQRHRQALVVSAPERI 208
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265
+E+ +L++ + A+ + + + + + + E + L +
Sbjct: 209 LAELQRLVKGPHADQALHLLEQWPLLQPWATTTPTAASYDTTLLNAEEATIALPLARLTK 268
Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
I K+ + ++ + K ++ ++
Sbjct: 269 LIS----------DDGLKRLKASKMLQQRCARLRHWGLQAKQQPEALPEQE----RLQLH 314
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV-VKYGIPPGKKVGNI 384
+ AL + ++ + P PL G + + G+ G +G +
Sbjct: 315 LELEGDLAALILDLPKELQPQWLKRWRDPNDPLFHPTMPLDGGSLQKELGLSAGPTMGKV 374
Query: 385 LVHCKQEWINSSFQLSQEDLH 405
L + E Q E L
Sbjct: 375 LAQLRLERAFGRIQTRDEALK 395
>gi|206895876|ref|YP_002247140.1| polyA polymerase family protein, putative [Coprothermobacter
proteolyticus DSM 5265]
gi|206738493|gb|ACI17571.1| polyA polymerase family protein, putative [Coprothermobacter
proteolyticus DSM 5265]
Length = 705
Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 65/171 (38%), Gaps = 9/171 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++L L+K +VGGA+RD L+ + DID+ +++ +
Sbjct: 405 DQIGSLLEHLSKKGLNVYLVGGAIRDYLLGKTPDDIDLCFEGDIEKICLALDELGVGYDM 464
Query: 73 TSISYGTIKII--CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
T+ + + T R DL V D RRDFTINA+
Sbjct: 465 FGK---TLSVKCEWNGTKVEFTRARKDLYKSPGVLAEVEPATILEDLERRDFTINAIALQ 521
Query: 131 QQGK--VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
++D GL+DL++R I+ I R ED R R +
Sbjct: 522 LTPGVSILDPFQGLDDLKDRVIRLIKPWSLR--EDPSRAFRAINYKNRLNF 570
>gi|315127498|ref|YP_004069501.1| tRNA nucleotidyl transferase [Pseudoalteromonas sp. SM9913]
gi|315016012|gb|ADT69350.1| tRNA nucleotidyl transferase [Pseudoalteromonas sp. SM9913]
Length = 418
Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 62/265 (23%), Positives = 105/265 (39%), Gaps = 21/265 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ +VGGAVRD L+N+ +D D VM +P + +
Sbjct: 12 QVYLVGGAVRDKLLNIQSKDNDYVVIGETPEVMEAL-----GFLPIGSDFPVY--LHPHT 64
Query: 88 YFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y V + D RRD TIN++ D+ +ID G +
Sbjct: 65 KEEYALGRTERKSGKGYTGFVVDASPNVTLEEDLARRDLTINSMALDENDTIIDPFNGQD 124
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI---KAKKGLKIL 200
DL+N+ ++ A +ED +R+LR RF A YG + A + K K L+ L
Sbjct: 125 DLKNKVLRHTTQA---FVEDPVRVLRIARFLARYGSEWSIHPSTTALMQELKNKGELEHL 181
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER+W E K L K+P + G IF +++++ E
Sbjct: 182 VPERVWLETEKALGEKHPELYFQALDGLG----IFPEIEQMKNTPQPANHHPEGDVFVHT 237
Query: 261 DSLLRFIVLISWQDKKSILSMAKKF 285
+LR +++ + ++ F
Sbjct: 238 MLVLRRAADLNFNLETRFAALTHDF 262
>gi|226952618|ref|ZP_03823082.1| tRNA nucleotidyl transferase [Acinetobacter sp. ATCC 27244]
gi|226836698|gb|EEH69081.1| tRNA nucleotidyl transferase [Acinetobacter sp. ATCC 27244]
Length = 409
Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 66/410 (16%), Positives = 131/410 (31%), Gaps = 72/410 (17%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ + D + PD+++ P + + K
Sbjct: 2 QVYLVGGAVRDQLLGHPYHEKDYVVVGATPDQLLAE------GYQPVGKDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ G + D +RRD TINA+ D G+V D GG
Sbjct: 54 TKEEYALARTERKSGVGYHGFQFFTDADVSLEEDLIRRDLTINAMAMDANGQVYDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL + ++ + H ED LR+LR RF A Y + +
Sbjct: 114 KDLEQKILRHV---SHAFTEDPLRVLRVARFAARYESYGFKIADETLHLMREIAESGELN 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------------SL 243
+ ER+W E + L + + K +F +V + +
Sbjct: 171 ELTPERVWKETARALMEDHADVYFKILRECHALKILFPEVDALFGVPQRPEYHPEIDCGI 230
Query: 244 DQLSQVIEAEQV----------------FEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287
L + +A + L V+ + + + + + +
Sbjct: 231 HTLMALQQACKADYALDVRFAVLVHDLGKALTPIEELPRHVMHEERGIQPVTVLCDRLKV 290
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA------------L 335
P ++ ++ + + I + L+ ++ + + A L
Sbjct: 291 PTHLKNLALTVCKEHLKCHQVQILKPGTLWRFLQRLDVLRRPEKVRAFVQACECDARGRL 350
Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385
+ + FIL + + + + P + G ++G +L
Sbjct: 351 GMEDRPYPQAQFILNAMDIVRNIRAQDLP--------EHVK-GPEIGEML 391
>gi|320334701|ref|YP_004171412.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Deinococcus maricopensis DSM 21211]
gi|319755990|gb|ADV67747.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Deinococcus maricopensis DSM 21211]
Length = 431
Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 72/399 (18%), Positives = 127/399 (31%), Gaps = 63/399 (15%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI-FSKTRYKVIPTSISYGTIKIICRKK 87
+ +VGGA RD L + +D D A P+ R ++T P G ++
Sbjct: 14 ALLVGGAARDLLSGRTPKDFDWAAP-DPEGAARAVAAQTGGSAFPLDPDRGYWRVSAGDV 72
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
D + D LRRDFT+NAL G+V D GG DL+
Sbjct: 73 QHDFV---------------PQPDRLEDDLLRRDFTVNALALHADGRVTDPTGGRRDLQR 117
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
R ++ + +A+ R D LR+LR R G + + A L + + ER+
Sbjct: 118 RQLRMVSEANLR--ADPLRLLRAARLSTTLGFRVEPATEAALRHLAAANLPLPAPERVRE 175
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---------ISLDQLSQ-VIEAEQVFE 257
E+N LL + ++ + + G+ + ++ E LD L + Q+
Sbjct: 176 ELNALLLHPDAARGVLRLQDLGLLRLYLPELAEGEGVSQGGFHHLDVLHHGIEALHQLLA 235
Query: 258 WKIDSLLRFIVLISWQDKKS-------------------------ILSMAKKFSLPREIR 292
D+ L D ++ + P ++
Sbjct: 236 RSPDATLTLRWATLLHDVGKPRTRAVDPTTGRVSYHGHDRVGADLTRALLTRLRFPADLT 295
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
+ + + E ++ Y + + L
Sbjct: 296 EYASALVKAHMLPLPADEREARRFVYRRRALLPDLLSLMLADREAARGPSSHPGTRLAYA 355
Query: 353 SDIIHW--------KKPLFPLTGDDVVK-YGIPPGKKVG 382
+ + P L G D++ + PG +VG
Sbjct: 356 RAMDRVLAALDAQPEAPRPLLNGADIMTLLSLTPGPEVG 394
>gi|183232594|ref|XP_652076.2| tRNA nucleotidyltransferase [Entamoeba histolytica HM-1:IMSS]
gi|169801970|gb|EAL46694.2| tRNA nucleotidyltransferase, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 461
Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 78/436 (17%), Positives = 138/436 (31%), Gaps = 58/436 (13%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK----------TRYKVIPT---- 73
+VGG VRD L+ DIDI + + + K + +I
Sbjct: 26 IRVVGGWVRDKLLGKESHDIDITVDNMQSYQFSQYLQKYINENTQHNVSGIGIIHKNHSA 85
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
T + DI LR+ D D+ RRDFTINA++
Sbjct: 86 GKHLETATLRIDNIAIDICCLRASDYCD---NDEEKIGTPLEDAQRRDFTINAMFYRVND 142
Query: 134 KVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
I+ + G NDL++R I+ + +D R LR RF G +
Sbjct: 143 DQIEDLTGCGLNDLKSRIIRTPISPKETLHDDPARALRAIRFSGKMGFVLDEELEQEMKT 202
Query: 192 KA--KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
K K + LS ER+ E+ ++++ P I + G FK +F D+ EI+ + +
Sbjct: 203 KYIGDKMISGLSRERLGRELIGMIQSDRPAYCIDQIRQFGYFKGLFGDLDEITTTNVVRS 262
Query: 250 IEAEQVFEWKID----------SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
E + +LL + + Q K+ + + +
Sbjct: 263 YEMYAQKFGAFELGRREIGFLAALLYSVTRETNQKKRMAKIHSVIIDSLKLSVKERNNII 322
Query: 300 NCNFNQKTLSIPEIKKLFYL--------YGDKVMIAKLKIFLALH--------------- 336
+ K L KK + + + + A+H
Sbjct: 323 LVHNGVKELEQLSNKKEWTRVEVGRIVVASAEWWKESICLSCAIHAPCDGVLVSPYDKGV 382
Query: 337 --YNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWI 393
+ + L + + + + G++ K G + IL + I
Sbjct: 383 MNKTMVEWCNLLLNKIALEKLENIWQMKPLVNGEECSKILQRKGGPWLKEILKDMIELQI 442
Query: 394 NSSFQLSQEDLHHLLR 409
E + +L+
Sbjct: 443 EKPMITKDEVVVFVLK 458
>gi|161621735|ref|NP_518206.2| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Ralstonia
solanacearum GMI1000]
Length = 408
Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 119/349 (34%), Gaps = 31/349 (8%)
Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
VGGA+RD+L+ L VQD D + P+ + +T K P + +
Sbjct: 2 YAVGGAIRDTLLGLPVQDRDYVVVGATPEAMEARGFRTVGKDFPVF--------LHPRTQ 53
Query: 89 FDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VIDY 138
+ R++ T Y + D +RRD TINA+ VID
Sbjct: 54 AEYALARTERKTAAGYKGFSVYYAPDVTLEDDLVRRDLTINAMAQRVAEDGALVGPVIDP 113
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--G 196
GG DL +RT + + +ED +RILR RF A + E ++ + + +
Sbjct: 114 YGGQADLASRTFRHV---SEAFVEDPVRILRVARFAARFAEFHVAPETRALMQRMAEAGE 170
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
+ L ER+W E+ + L P + + G + ++ + E
Sbjct: 171 VDALVPERVWQELARGLLEARPSRLFAVLRDCGALVRLLPELDRLWGVPQRADYHPEVDT 230
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
++ + ++ + + +P I+ +
Sbjct: 231 GVHTMMVVDTAAAMDTPLPVRFAALVHDLGKG----TTPADILPRHVGHEARGLPMIEDI 286
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362
L I +A + N+ D ++++L +KP
Sbjct: 287 CRRLRVPTDCRDLAIMVAREHGNIHRSDGFDATALVRLLERCDALRKPE 335
>gi|317968102|ref|ZP_07969492.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
CB0205]
Length = 395
Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 57/400 (14%), Positives = 131/400 (32%), Gaps = 33/400 (8%)
Query: 22 LNKGEDKSCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79
L+ + +VGGAVRD+L+N D+D+ + + SK +G
Sbjct: 15 LSAFPADAALVGGAVRDALLNRLGPAPDLDLVVADGAIALCKTLSK----------RFGG 64
Query: 80 IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD--QQGKVID 137
++ + R + + D RRD+++NA+ Q+ +++D
Sbjct: 65 SPVVLD---AERDIGRLVIRGWSVDLARREGQSLADDLQRRDYSVNAMALPLAQRDQLVD 121
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
GGL L+ R + + + + D L A E +D + ++ L
Sbjct: 122 PHGGLEHLQRRRLVALAERNL---LDDPLRLLRGVRLASELEFELDETTAGWIQRHRERL 178
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL--DQLSQVIEAEQV 255
++ ER+ +E+ KL ++ + + ++ + +
Sbjct: 179 SSVAGERVLAELEKLCQSPQGQQGLQR-CLDWGLLAPCPALAPLTPLTAEQASSRGLSDQ 237
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ L R ++ ++ R+++ + + + E +
Sbjct: 238 ESQEALPLARMAAVLDGPG-------LQQLKSSRKLQQRVQRLRHWQQRLGAQNPAEHAE 290
Query: 316 LFYLYGD-KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV-VKY 373
++ AL + T ++ + P + GD + +
Sbjct: 291 ALEEAERLQLHRDLSSDLPALLLHWPAPAATAWLRRWRDPEDRLFHPRAAINGDQLQQEL 350
Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
G+ ++G++L E + E L R+ +
Sbjct: 351 GLKASPQLGSLLQFLMLEQAFGRLDGTAEAL-ERARQWLE 389
>gi|167835097|ref|ZP_02461980.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia thailandensis MSMB43]
Length = 327
Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 65/326 (19%), Positives = 112/326 (34%), Gaps = 28/326 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGA+RD L+ L V+D D + P+++ +K P + +
Sbjct: 2 RIYAVGGAIRDELLGLPVRDRDYVVVGATPEQMAA----QGFK--PVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VI 136
+ + R++ T Y F + D +RRD TINA+ + V+
Sbjct: 54 THEEYALARTERKTAAGYHGFQFHYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVV 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK- 195
D GG DLR + + +G A +ED +RILR RF A + E ++ D K
Sbjct: 114 DPFGGQADLRAKLFRHVGGA---FVEDPVRILRVARFAARFAEFSVAPDTAALMRKMVDA 170
Query: 196 -GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
L ER+W E+ + L P + G I ++ + E
Sbjct: 171 GEADALVPERVWQELARGLMEAKPSRMFAVLRECGALARILPEIDALFGVPQRADYHPEV 230
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ ++ S+ + + + S+ +K
Sbjct: 231 DTGVHVMMVIDHAAKQG----YSLPVRFAALTHDLGKATTPADVLPRHIGHEGRSVDLLK 286
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNL 340
L L + +A + NL
Sbjct: 287 PLCERLRVPNECRDLALVVAREHGNL 312
>gi|157415060|ref|YP_001482316.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni
81116]
gi|157386024|gb|ABV52339.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Campylobacter
jejuni subsp. jejuni 81116]
gi|307747701|gb|ADN90971.1| PolyA polymerase family protein [Campylobacter jejuni subsp. jejuni
M1]
Length = 372
Score = 87.2 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 64/407 (15%), Positives = 131/407 (32%), Gaps = 48/407 (11%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYK 69
++SDL I L ++ +VGG+VRD + L + D DI I +I K +
Sbjct: 10 NNSDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKICDYDIELYDIKLKDFEKIMQKLGAQ 69
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINAL 127
S+ + + K +D+ R++ + D K + RRDFTIN++
Sbjct: 70 GF--GKSF----FVYKFKNYDLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSM 123
Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ + +D+ GGL DL ++ ED LR+LR F + + K
Sbjct: 124 MINLFNDEFLDFYGGLKDLGAGFLR--HIDKQSFQEDSLRVLRAVVFASRFNFKITSESL 181
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ L + K + + + + +
Sbjct: 182 KLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQELGLEKQVFGFESVFKSL---EF 238
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ + F L + +K +++ + + N F
Sbjct: 239 QNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRT-------KLKKEYLKYANQAFYLD 291
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+S E+ K+ + K + + + ++ ++ +
Sbjct: 292 DISDFELAKIAFEMPLKEWLGLW-----------SKKRIEQAKRLGLYENKFESKIL--- 337
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
D + G GK +G L ++ +L ++ L+
Sbjct: 338 AKDFINAGF-CGKILGLKLQEARE-----------NELKEYIKGLVK 372
>gi|328773569|gb|EGF83606.1| hypothetical protein BATDEDRAFT_86022 [Batrachochytrium
dendrobatidis JAM81]
Length = 544
Score = 87.2 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 18/231 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK------------TRYKVIPTSI 75
+ GG VRD L+ + DIDIA + + R + +V P
Sbjct: 56 LRVAGGWVRDKLLGRTSDDIDIAIDTMKGEPFARHLKEYMLSKSMSLGTIYTIQVNPDRS 115
Query: 76 SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+ T + + D LR+++ + +V D+LRRD TIN L+ + +
Sbjct: 116 KHLETATVRVLGRDLDFVHLRTEIYDENSRNPIVEFGTPLQDALRRDITINTLFYNLNTR 175
Query: 135 VIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++ + G +DL I+ + ++D LR+LR RF +G + + + AS
Sbjct: 176 EVEDMTGHGLDDLSAGLIRTPLEPLSTFVDDPLRVLRVIRFATRFGYEIVSNILKAASDD 235
Query: 193 --AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
+K +S ERI E+NK+LE +P+ AI + + + +FL I
Sbjct: 236 LIKTAFIKKISRERIGVELNKMLEGPDPVRAIKILQDIEFYPLVFLAPPNI 286
Score = 39.8 bits (91), Expect = 0.72, Method: Composition-based stats.
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 362 LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
L G ++ G+ G ++G L H + + S ++E ++
Sbjct: 476 RPLLDGKEIATILGVKLGPQIGRYLYHVMEWQL-SHVNSTKEQCVEFVK 523
>gi|121716898|ref|XP_001275945.1| poly(A) polymerase [Aspergillus clavatus NRRL 1]
gi|119404102|gb|EAW14519.1| poly(A) polymerase [Aspergillus clavatus NRRL 1]
Length = 635
Score = 87.2 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 75/474 (15%), Positives = 152/474 (32%), Gaps = 94/474 (19%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI---------------LPDRVMR------------ 61
GG VRD L+ + DID+ + P+ + +
Sbjct: 153 LRFTGGWVRDKLLGVDSHDIDVGISSMTGYQFGMALKTYLDDPENLEKYKRNHPNGELKE 212
Query: 62 -IFSKTRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
I S + + P + T+ D+ LR + TD + + D++R
Sbjct: 213 AIVSLHKIEANPEKSKHLETVTTKIFGLDIDLVNLRKETYTDESRNPQMEFGTAEEDAMR 272
Query: 120 RDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TINAL+ + ++ G D+RN+ I+ + + +D LR+LR RF +
Sbjct: 273 RDATINALFYNLNESKVEDFTGRGFEDMRNKIIRTPLEPYQTFKDDPLRVLRLIRFASRL 332
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G + L + +S ER+ +E+ K+L+ +P A+ + G++ IF
Sbjct: 333 GYNIDANTQLAMQNSDISTALKQKISKERVGTELEKMLKGPDPRGALHLIDQIGLYPTIF 392
Query: 236 LDVQE----------ISLDQLSQVIEAEQVFEWKI----DSLLRFIVLISWQDKKSILSM 281
+ Q+ ++ + L ++ ++ + + + L+R + + L+
Sbjct: 393 ANNQDDATADTSSWSLAYNALETLLHHDEALKPTLEKVRNFLIRDAQETYYAWIITALAP 452
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV--MIAKLKIFLALHYNN 339
+ + S+ K + GD + + + +L
Sbjct: 453 WSSVAGRVAKGPKAKPLPPRSVEVARDSLRSDNKTLSVLGDAATNWNSIIDVKSSLLEGR 512
Query: 340 LTHQDTCFILQVLSDIIHWKK--------------------------------------- 360
+ D Q+ + WKK
Sbjct: 513 IEGTDAEVRQQIALHMRSWKKDWRLCMVLAILQEIMKGREILPVAQEYDQLISYIVKNDL 572
Query: 361 -----PLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G +V+K G G + L + + +E +
Sbjct: 573 QDVCEMKPMVNGAEVMKAMGAKNGPWLSKALDLVIKWQLLHPEITEKEKALEYV 626
>gi|148240592|ref|YP_001225979.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
WH 7803]
gi|147849131|emb|CAK24682.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
WH 7803]
Length = 421
Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 77/387 (19%), Positives = 136/387 (35%), Gaps = 28/387 (7%)
Query: 31 IVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+N D+D+ ++ ++ +G ++ ++
Sbjct: 44 LVGGAVRDGLLNRLPPCPDLDLVVPGAVLGTVQRLAR----------EHGGACVVLDEQR 93
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG--KVIDYVGGLNDLR 146
R L + D D RRDF +NA+ ++ID GGL DL+
Sbjct: 94 Q---MARLVLKGWTIDFARLEGEDLTEDLFRRDFRLNAIALSLSHPQQLIDPTGGLQDLQ 150
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
+ I I +++ R +D LR+LR R A E ID+D L L + ERI
Sbjct: 151 DGLICAIRESNLR--DDPLRLLRALRLMAEL-EMRIDTDTLAMVKANGALLTRSAPERIQ 207
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
+E+ +L+ A AI + + + K + S SQ + A + SL
Sbjct: 208 AELLRLVAAPAADAAITLLQSLDLLKPWSAPGWQHSHVNASQPLRAASSMTLEEQSLALP 267
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ ++ S + R + ++ L +
Sbjct: 268 LARLTALLS---DSGLRSLRFSRRQIQRCAKLRQWQERCAHGDSSSLDEMERLRLHQ--- 321
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNIL 385
AL ++ Q + P PL GD + + + PG +G ++
Sbjct: 322 DLEADLPALVLCWPEQHRDRWMQQWRNPEDPLFHPRSPLDGDTLQSELSLNPGPILGALI 381
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLI 412
+H ++ L R+ +
Sbjct: 382 LHLTTARAYGRVSSREQALDE-ARRWL 407
>gi|255322373|ref|ZP_05363519.1| polyA polymerase family protein [Campylobacter showae RM3277]
gi|255300746|gb|EET80017.1| polyA polymerase family protein [Campylobacter showae RM3277]
Length = 378
Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 64/404 (15%), Positives = 136/404 (33%), Gaps = 34/404 (8%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVM 60
+S + K + +L + L ++ IVGG VRD+++ + D D+ P +
Sbjct: 1 MSKIGSKICKNKNLKWLRDFLAPYTKRAYIVGGCVRDAMLGKKISDFDVEIYGIEPAKFD 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSL 118
+ ++ +Y + + K FD++ R++ T + ++ D +A SL
Sbjct: 61 ALMAQ--IGACGVGKNY----FVYKFKNFDLSLPRTENKTGEGHKAFEVAYSDDERAASL 114
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDFT+NA+ + G R I + ED LRILR +F A
Sbjct: 115 RRDFTVNAMMINIFDGSFLDFYGGERDLKRGILR-HIDDEKFAEDSLRILRAVQFSARLN 173
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ + + L ++ + G + K L++
Sbjct: 174 FRIARESLGLMKRLSISDLSRERINGELMKLFGAKFQEVGFL--YLYKLGLLGKIFGLNL 231
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
++ + +++ F K + + + + LP+
Sbjct: 232 SRAEAEKFAAKLKSAVKFLPKQNGKKDEREFLYLLNGFFGIKNFYDLGLPK--------- 282
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S K + LKI L + ++ +++ ++ +
Sbjct: 283 ----------SFEACVKEPFFACRPSDKDLLKIALDKLLKSWLGLNSPSLIKRAKNLGVY 332
Query: 359 K-KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401
+ K + +++K G G +G + + I+ F +
Sbjct: 333 EAKFEPTIDTAEILKLGFK-GAAIGAEIRRRQDIAID-KFLNEK 374
>gi|238881733|gb|EEQ45371.1| hypothetical protein CAWG_03694 [Candida albicans WO-1]
Length = 531
Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 64/358 (17%), Positives = 119/358 (33%), Gaps = 26/358 (7%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK--------------TR 67
N + I GG VRD L+ DIDIA + + +
Sbjct: 33 NNDSLELRITGGWVRDKLLGNESHDIDIAVNHLTGEEFVNGLHYYLRQHEPELSMNHVHT 92
Query: 68 YKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
K+ P + T D LRS+ T + + D++RRD T+NA
Sbjct: 93 IKMNPEKSKHLETCTTKLFGVDIDFVNLRSEEYTHDSRVPSIEFGTPEQDAVRRDATLNA 152
Query: 127 LYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
L+ + I+ GL+DL+N +K L+D LRI+R RF + +
Sbjct: 153 LFYNLNQGEIEDYTKRGLSDLQNGILKTPLAPIKTFLDDPLRIIRLIRFASKFNFVVESE 212
Query: 185 DGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYN------GGIFKEIFL 236
+ K +S ERI E+ K+L + NP + + E+
Sbjct: 213 TLNAMKEEHNKSALSTKISKERIEIELRKILTSNNPGYGLQLINYVDLASSIFYVPELAK 272
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ SL++ + I + + S + K+ + + + + +
Sbjct: 273 EFDNESLEKARSQLARHMEIASLIYPNFKQTINNSTEKFKNEFAALMANDDYKNVFWLSV 332
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ +I + G + + A++ N+ +++
Sbjct: 333 ILHPYTNVKSCKPNRDIFNQYLRLGLTSKKSDIAKVSAINMNSAELSRFFSAPELVKR 390
Score = 45.6 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKK-----PLFPLTGDDV-VKYGIPPGKKVG 382
KI + N + + + I +W + G + G+ PG +
Sbjct: 439 EKILGDENINKVISEIVSRYENLFVQIENWDLTNVHLVKPLIDGTTLSKSLGMKPGPWLR 498
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ +++ Q S ++ ++ +I
Sbjct: 499 PTIEEILVWQLDNP-QSSVDECFEFVKSII 527
>gi|241954086|ref|XP_002419764.1| tRNA nucleotidyltransferase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
gi|223643105|emb|CAX41979.1| tRNA nucleotidyltransferase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
Length = 547
Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 66/358 (18%), Positives = 119/358 (33%), Gaps = 26/358 (7%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK--------------TR 67
N + I GG VRD L+ DIDIA + + +
Sbjct: 49 NNDSLELRITGGWVRDKLLGNESHDIDIAVNHLTGEEFVNGLHDYLRQHEPELSMNHVHT 108
Query: 68 YKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
K+ P + T D LRS+ T + + D++RRD T+NA
Sbjct: 109 IKMNPEKSKHLETCTTKLFGVDIDFVNLRSEEYTHDSRVPSIEFGTPEQDAVRRDATLNA 168
Query: 127 LYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
L+ + I+ GL+DL+N +K L+D LRI+R RF + +
Sbjct: 169 LFYNLNQGQIEDYTKRGLSDLQNGILKTPLAPIKTFLDDPLRIIRLIRFASKFNFVVESE 228
Query: 185 DGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYN------GGIFKEIFL 236
+ K +S ERI E+ K+L + NP + + E+
Sbjct: 229 TLNAMKEEHNKSALSTKISKERIEIELRKILTSNNPGYGLQLINYVDLASSIFYVPELAK 288
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ SL+Q + I + ++ S + K S + + + +
Sbjct: 289 EFDNESLEQARSQLARHIEIASLIYPNFKQTIMNSTEKFKKEFSALMANDDYKSVFWLSV 348
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ +I + G + + A++ N+ +++
Sbjct: 349 ILHPYTNVKSHKPNRDIFNQYLRLGLTSKKSDIAKVSAINMNSAELSRLFSAPELVKR 406
Score = 46.0 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKK-----PLFPLTGDDV-VKYGIPPGKKVG 382
KI + N + ++ I +W + G + +G+ PG +
Sbjct: 455 EKILKDENINKVISDVVSRYEKLFIQIENWDLTNVHLVKPLIDGTTLSKSFGMKPGPWLR 514
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ +++ Q S ++ ++ +I
Sbjct: 515 PTIEEILVWQLDNP-QSSVDECFEFVKTII 543
>gi|123446371|ref|XP_001311937.1| polyA polymerase family protein [Trichomonas vaginalis G3]
gi|121893765|gb|EAX99007.1| polyA polymerase family protein [Trichomonas vaginalis G3]
Length = 457
Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 82/446 (18%), Positives = 162/446 (36%), Gaps = 50/446 (11%)
Query: 12 DSDLINILSL----LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI-----LPDRVMRI 62
DS++I+I+ + I GG VRD ++ DIDIA + ++++
Sbjct: 19 DSEVIDIIKRTVTEILPKNVIVRIAGGWVRDKILGKENDDIDIAISGATCTEFSQTMVKV 78
Query: 63 FSKTRYKVI-----PTSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD 116
VI S T ++ + R + DI LRS+ ++G ++D
Sbjct: 79 LGPNTKVVILEANHEQSKHLNTARVCLFRDFWLDICGLRSESYSEG----ETSEGTAQSD 134
Query: 117 SLRRDFTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
+ RDF++NAL+ + Q I+ G+ ++++ I+ A +D RI+R FRF A
Sbjct: 135 ARHRDFSMNALFFNLQTMKIEDYVKGVQSIKDKVIRTPISAIEDFTDDPNRIVRCFRFVA 194
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
Y + L ++ +RI +E+ K+L AK+ A+ H+ + G+ IF
Sbjct: 195 KYDFQIDQEILDAIPKIIPLFLHNITKDRIATELTKMLHAKSAFFAMQHLISSGMLSPIF 254
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-SILSMAKKFSLPREIRYF 294
SLD + +V + + D ++ + + ++ +
Sbjct: 255 DSESLWSLDMEKTLQRVRRVHQIQPDLTGNDSMITYFAAVLLDLEEKKAVPDPEKKNKPM 314
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI--------FLALHYNNLTHQDTC 346
+ + + + L+G ++ K + L +
Sbjct: 315 PAITYQIVRSMRLQNALADNVKKILHGKLMVEKIFKDGMNRVNVGRFVMSTGPLFYLVRP 374
Query: 347 FIL--QVLSDIIHWKKP-------------LFPLTGDDVVK-YGIPPGKKVGNILVHCKQ 390
+ +L + KP L G + +GI PG + +++
Sbjct: 375 LLQTDDLLDFYDNKLKPFIEEQNLSKSYEMKQILDGVTLASVHGIKPGPGLKDLIDQMID 434
Query: 391 EWINSSFQLSQEDLHHLLRKLIASSQ 416
+ S + +K IA +
Sbjct: 435 WQFANPNGTSDDY-----KKYIAEKK 455
>gi|254468852|ref|ZP_05082258.1| CCA-adding enzyme [beta proteobacterium KB13]
gi|207087662|gb|EDZ64945.1| CCA-adding enzyme [beta proteobacterium KB13]
Length = 365
Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 77/382 (20%), Positives = 134/382 (35%), Gaps = 33/382 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD ++N + D P+ ++ K P S+ +
Sbjct: 2 KIYLVGGAVRDEILNQPYTEKDYVVVGSTPEEMIEK------KFKPVGKSF--PVFLHPD 53
Query: 87 KYFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R++ Y +F T + D +RRD TINA+ D Q K ID G+
Sbjct: 54 THEEYALARTEKKNGVGYKDFIFYTSPTISLEEDLVRRDLTINAIAKDDQNKYIDPFNGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL--KIL 200
ND+ + ++ + ED LRILR RF A + I + LV K L
Sbjct: 114 NDISKKILRHV---SDAFKEDPLRILRLARFKAKLPDFKIAEETLVLLKTMINEGELKYL 170
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ----LSQVIEAEQVF 256
S +RI EI K+ + K + + G +IF + + L + + + F
Sbjct: 171 SYDRIIIEIKKVFQLKEGHIFFKTLEDIGAIDQIFENNNKRKLSECFQSFFKHGHYFKNF 230
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+ + + S+ K + + + + N + + ++
Sbjct: 231 NLC-WLFFQEKFNFKFSKQYSVNFSKKDLDINKTFKELIKDLLNFRNLSSADQLFVLNRV 289
Query: 317 FYLYGDKVMIAKLKI--FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP--LTGDDVVK 372
+ D + L++ L N + L + K+ P LTG D +
Sbjct: 290 GFFSKDDKLDKILELIRLDLLIDQNDLNISLLTYHDKLENFFKNKQINIPSNLTGKD-IA 348
Query: 373 YGIPPGKKVGNILVHCKQEWIN 394
I L +
Sbjct: 349 EHIK-----KQRLNFLESFQFE 365
>gi|170699652|ref|ZP_02890690.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia ambifaria IOP40-10]
gi|170135468|gb|EDT03758.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia ambifaria IOP40-10]
Length = 413
Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 59/238 (24%), Positives = 90/238 (37%), Gaps = 24/238 (10%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P++++ ++ P + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQMVA----QGFR--PVGKDF--PVFLHPDT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ R++ T Y F D RRD TINA+ + + VID
Sbjct: 55 QEEYALARTERKTAAGYHGFQFYFAPDVTLDEDLARRDLTINAMAREVSPEGALVGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
G DLR R + +GDA +ED +RILR RF A + + + D L +
Sbjct: 115 PFDGQADLRARVFRHVGDA---FVEDPVRILRIARFAARFADFTVADDTLALMRRMVDAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
L ER+W EI + L P + G I +V + E
Sbjct: 172 EADALVPERVWQEIARGLMEAKPSRMFAVLRECGALARILPEVDALWGVPQRADYHPE 229
>gi|123374577|ref|XP_001297753.1| polyA polymerase family protein [Trichomonas vaginalis G3]
gi|121878046|gb|EAX84823.1| polyA polymerase family protein [Trichomonas vaginalis G3]
Length = 450
Score = 86.8 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 80/414 (19%), Positives = 148/414 (35%), Gaps = 37/414 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIF---------SKTRYKVIPTSISYG 78
+ + GG VRD L++ +D D+ + S
Sbjct: 37 ARLAGGWVRDKLIDKESKDYDVTLEGCTGVEFANNLCTYLESKSIEHRVIRNPDQSKHLS 96
Query: 79 TIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI- 136
+ K+ + + + D ++LRS+ + +V D+ RRDFTIN LY + K +
Sbjct: 97 SAKVCLFGEVWIDFSSLRSEKYKEDSRIPIVEEGTPLQDAERRDFTINTLYYNICTKKVE 156
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
D+ G DL+N+ ++ D+ ED LRILR RF + + +S
Sbjct: 157 DFFNGYQDLQNKILRTPKDSLVSFQEDPLRILRALRFASRFNLTYEESIPNAIEQCRDVY 216
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ---LSQVIEAE 253
L ++ ER +EI+ L +P+ I G F+ +F +E+ LD + +V A
Sbjct: 217 LHKVTPERAAAEISPALLGPDPIRYIKDSMKFGFFQIMFNRSKELELDNDVVIKRVTFAL 276
Query: 254 QVFEWKIDSLLRFIV-LISWQDKKSILSMAKKFSLPREIRYFLISFF------------- 299
+ L K + S + +
Sbjct: 277 SHLHKEYQLQLILGAIYFDEFGKGMLQSKKYGRKCDQVEKIISRVLRMTVQICDGARQLM 336
Query: 300 ---NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+ K L+ E+ + G+ I+ IF YN + + T + + ++
Sbjct: 337 NGADQLSKIKNLNNIEVGRAIRQSGELWRISTSLIFDEDTYNFVVNDVTQYANEH--NLS 394
Query: 357 HWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ + L G+++ K YG+ G + + Q ++ED +
Sbjct: 395 NAYEIKPLLNGNELSKIYGVK-GADLKPFQESMIDWQLEHP-QGTKEDCLQFIE 446
>gi|255956289|ref|XP_002568897.1| Pc21g19060 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590608|emb|CAP96803.1| Pc21g19060 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 561
Score = 86.8 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 68/478 (14%), Positives = 146/478 (30%), Gaps = 96/478 (20%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFS---------KTRYKVIPTSISY- 77
GG VRD L+ + DID+ + + + + K +P +
Sbjct: 79 LRFTGGWVRDKLLGVDSHDIDVGISNMTGYQFGMALKDYLDVPEHLENYKKGLPNGEMHD 138
Query: 78 ------------------GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
T+ D+ LR + TD + D+LR
Sbjct: 139 AIVSLHKIEANPEKSKHLETVTTKIFGLDIDLVNLRKETYTDDSRNPQMEFGTAVEDALR 198
Query: 120 RDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TINAL+ + ++ GL+D++ I+ + + +D LR+LR RF +
Sbjct: 199 RDATINALFYNLNESRLEDLTERGLDDMKKNIIRCPMEPYQTFKDDPLRVLRLIRFASRL 258
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIW-----SEINKLLEAKNPLNAIVHMYNGGIFK 232
G + I+ + L + ++ + + + L I +
Sbjct: 259 GYQIEAETEAAMQIEDIREALKLKISKERVGTEVEKMLRGPDPRGALQFIDRLQLFPTIF 318
Query: 233 EIFLD-------VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
D ++ + L++++ E ++ ++ + I + ++D+ +I
Sbjct: 319 ANHHDDVKADTSTWPLAYNTLARLLHPEAGDSEEVQAVTKRIRGVLFRDETTIYYAWMIA 378
Query: 286 SL-----------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI-- 326
+ PR + S + N L + + ++
Sbjct: 379 TFAPWTSIPGRTGKGKPLPPRAVEVGRESLRSDNKTLNALRAAALHYKETIATKNALLTN 438
Query: 327 -----------------------AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-- 361
K I LA+ N+ +D + + +
Sbjct: 439 QMSGTPAEIRQRVGLQMRSWNKDWKFCILLAILQENMALRDFAEVAGEYDHFLAYIVEND 498
Query: 362 -------LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
+ GD+++K G G + + + + +E L + R+
Sbjct: 499 LEGVCELKPIVNGDEIMKSLGAKKGPWMSKAVNMALEWQLLHPDSTDKEKALEEIARR 556
>gi|326575162|gb|EGE25090.1| tRNA nucleotidyltransferase [Moraxella catarrhalis CO72]
Length = 389
Score = 86.8 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 74/389 (19%), Positives = 141/389 (36%), Gaps = 47/389 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+++ L + D D P ++ + I + + + K
Sbjct: 2 QVYLVGGAVRDAVLGLPITDKDFMVVGATPQVLLDL------GFIQVGVDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYA---------DQQG 133
+ R + + + + + D +RRD TINAL G
Sbjct: 54 TQAEYALARIERKSGVGHTAFQVHADPSVRLEEDLIRRDLTINALAIEVKGLFDETPMTG 113
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VA 189
KVID+ GGL D++NRT++ + ED LR+LR RFFA + +
Sbjct: 114 KVIDFYGGLTDIQNRTLRHV---SPAFSEDPLRVLRVARFFARFAPLGFSIHDSTAKLMQ 170
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---SLDQL 246
I + LS ER++SE K + I ++ I I + + ++
Sbjct: 171 DIAKSGEMSSLSRERLYSEFVKAMRQPQGDQFIACLHQLDILPFILPTLAQHFNTPQNRQ 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF--- 303
+ F +L+S K + + + P+ IR F+ +F + +
Sbjct: 231 RTFTRLALACTLNLPIFSHFAMLLSDLPKDDLSDCLNRLNAPKSIRQFIQTFNHFHDTFI 290
Query: 304 ---NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
N ++ E+ + + D + +L + + ++ ++
Sbjct: 291 ALPNISGNALLELLERTQAHKDSTKLIQLYDACHAYQGSPLSYPKQWLFDAITCHQSISI 350
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
T + K K +G+ L + +
Sbjct: 351 ADIDPT---LTK------KAIGDALSYLR 370
>gi|167393627|ref|XP_001740657.1| poly(A) polymerase [Entamoeba dispar SAW760]
gi|165895170|gb|EDR22921.1| poly(A) polymerase, putative [Entamoeba dispar SAW760]
Length = 484
Score = 86.8 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 72/448 (16%), Positives = 131/448 (29%), Gaps = 68/448 (15%)
Query: 16 INILSLLNKG------EDKSCIVGGAVRDSLMNLSVQDIDIATTI-----LPDRVMRIFS 64
INI +LN +VGG VRD ++ + DIDI + V +
Sbjct: 19 INIFKVLNNTKQYFNLNCTVRVVGGWVRDKILKKNSHDIDITSEGISGVQFAQYVTKYLQ 78
Query: 65 KTRYKV-----IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ T + D + R++ D + D +R
Sbjct: 79 SQGINTKLLTNREQTEHLQTATATICELPIDFGSPRAEEYKDNSRIPEIRKGSIYEDCIR 138
Query: 120 RDFTINALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN L+ + VI+ G DL N+ I+ D +D LR+ R RF A YG
Sbjct: 139 RDFTINCLFYRIEDGVIEDYTSGYEDLLNKLIRTPIDPLQSFTDDPLRVFRGIRFSAKYG 198
Query: 179 EKNIDSDGLVAS-IKAKKGLKILSSERIWSEINKLLEAKNPLNAIV-------------- 223
K D+ + +G+ + R E+N +L + +P
Sbjct: 199 FKIEDNTLNAMTSPTVLRGMNKIKKSRRTPELNNILISSHPSYGFHVFQYCHLLKEVLIT 258
Query: 224 -----------------HMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
MY V++ D L ++ + +K D+
Sbjct: 259 EESTECNWEIVQSNSIPLMYCCEEVFNSISQVKD-DTDMLKHLLLTALCYSFKNDTFFFK 317
Query: 267 IVLISWQDKKSILSMAK---------------KFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ I + + + + K +
Sbjct: 318 KKELPMIPNIIIEGLKFTSKEREKVDNIIEGVNLLNQHNCKCERLYYGRSMLKSKEMWKA 377
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS--DIIHWKKPLFPLTGDD 369
I L + + I+ + Q ++ + + + G+
Sbjct: 378 SIILYCCLNSHFTIPSYPNIYFKIQIEPTLLQTVQHHFDLIYQFQLDNIWLITPAINGNQ 437
Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSS 396
+ + GK V + + I++
Sbjct: 438 ITQLYQTKKGKWVSTAINALIEYQISNP 465
>gi|33239616|ref|NP_874558.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|33237141|gb|AAP99210.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 415
Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 73/392 (18%), Positives = 136/392 (34%), Gaps = 32/392 (8%)
Query: 31 IVGGAVRDSLMNL--SVQDIDIATTILPDRV-MRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGA+RD L+N S+ D+D ++ + + + + +
Sbjct: 46 LVGGAIRDRLLNNYNSIPDLDFVVPKHAFQISKDLAKRYGGTAVHLDQHRDIARYVINDW 105
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK--VIDYVGGLNDL 145
DI + +D D LRRDFTINA+ + ID GGL+DL
Sbjct: 106 KIDIAS--------------QIGKDLNDDLLRRDFTINAIALNIFPTPAFIDPAGGLDDL 151
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
N+ + I + + ++D LRILR R + ++S K L ++SERI
Sbjct: 152 HNKKLVAISEQN--FIDDPLRILRGLRLVSELN-LKLESQTESLLKKNAGLLNRVASERI 208
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265
E+ +L++ + I + G+ + L E LS + L+
Sbjct: 209 KVELERLVQGPWANDVIPLVIKMGLLRPWSLSNNEEYFHSLS-----LKNVSSFTAKELK 263
Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
+ + + K ++ N LS + ++ L +
Sbjct: 264 IALPLVRLSNLLSVEGLVKLGFSKKTIKSCNLLKNWQKRNDGLSFRGLNEVDRLQLHIDL 323
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNI 384
L + + + + H P P+ G+ + + P G +G +
Sbjct: 324 ENHLPALILMLQTIDQKIWLERWRDLSDPLFH---PSSPIDGNTLKDTFDAPEGPWIGAL 380
Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ +E + +E L R ++
Sbjct: 381 IHFLSKERAFGRLRNREEA-FELARYWWEHNK 411
>gi|326563825|gb|EGE14076.1| tRNA nucleotidyltransferase [Moraxella catarrhalis 46P47B1]
gi|326563929|gb|EGE14179.1| tRNA nucleotidyltransferase [Moraxella catarrhalis 12P80B1]
Length = 388
Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 76/389 (19%), Positives = 139/389 (35%), Gaps = 48/389 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+++ L + D D P ++ + I + + + K
Sbjct: 2 QVYLVGGAVRDAVLGLPITDKDFMVVGATPQVLLDL------GFIQVGVDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYA---------DQQG 133
+ R + + + + + D +RRD TINAL G
Sbjct: 54 TQAEYALARIERKSGVGHTAFQVHADPSVRLEEDLIRRDLTINALAIEVKGLFDETPMTG 113
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VA 189
KVID+ GGL D++NRT++ + ED LR+LR RFFA + +
Sbjct: 114 KVIDFYGGLTDIQNRTLRHV---SPAFSEDPLRVLRVARFFARFAPLGFSIHDSTAKLMQ 170
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---SLDQL 246
I + LS ER++SE K + I ++ I I + + ++
Sbjct: 171 DIAKSGEMSSLSRERLYSEFVKAMRQPQGDQFIACLHQLDILPFILPTLAQHFNTPQNRQ 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ F +L+S K + + + P+ IR F+ +F + +
Sbjct: 231 RTFTRLALACTLNLPIFSYFAMLLSDLPKDDLSDCLNRLNAPKSIRQFIQTFNHFHDTFI 290
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ--VLSDIIHWKKPLFP 364
L L L + L+ +Q + + + I +
Sbjct: 291 ALPNISGNALLELLERTQAHKDSTKLIQLYDACHAYQGSPLYPKQWLFDAITCHQS---- 346
Query: 365 LTGDD----VVKYGIPPGKKVGNILVHCK 389
++ D + K K +G+ L + +
Sbjct: 347 ISIADIDPTLTK------KAIGDALSYLR 369
>gi|326560938|gb|EGE11303.1| tRNA nucleotidyltransferase [Moraxella catarrhalis 7169]
gi|326569836|gb|EGE19886.1| tRNA nucleotidyltransferase [Moraxella catarrhalis BC8]
Length = 389
Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 74/389 (19%), Positives = 141/389 (36%), Gaps = 47/389 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+++ L + D D P ++ + I + + + K
Sbjct: 2 QVYLVGGAVRDAVLGLPITDKDFMVVGATPQVLLDL------GFIQVGVDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYA---------DQQG 133
+ R + + + + + D +RRD TINAL G
Sbjct: 54 TQAEYALARIERKSGVGHTAFQVHADPSVRLEEDLIRRDLTINALAIEVKGLFDETPMTG 113
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VA 189
KVID+ GGL D++NRT++ + ED LR+LR RFFA + +
Sbjct: 114 KVIDFYGGLTDIQNRTLRHV---SPAFSEDPLRVLRVARFFARFAPLGFSIHDSTAKLMQ 170
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---SLDQL 246
I + LS ER++SE K + I ++ I I + + ++
Sbjct: 171 DIAKSGEMSSLSRERLYSEFVKAMRQPQGDQFIACLHQLDILPFILPTLAQHFNTPQNRQ 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF--- 303
+ F +L+S K + + + P+ IR F+ +F + +
Sbjct: 231 RTFTRLALACTLNLPIFSHFAMLLSDLPKDDLSDCLNRLNAPKSIRQFIQTFNHFHDTFI 290
Query: 304 ---NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
N ++ E+ + + D + +L + + ++ ++
Sbjct: 291 ALPNISGNALLELLERTQAHKDSTKLIQLYDACHAYQGSPLSYPKQWLFDAITCHQSISI 350
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
T + K K +G+ L + +
Sbjct: 351 ADIDPT---LTK------KAIGDALSYLR 370
>gi|167585186|ref|ZP_02377574.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia ubonensis Bu]
Length = 370
Score = 86.4 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 67/350 (19%), Positives = 118/350 (33%), Gaps = 31/350 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGA+RD L+ + VQD D + P++++ +K P + + +
Sbjct: 2 RVYAVGGAIRDELLGVPVQDRDYVVVGATPEQMVA----QGFK--PVGKDF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VI 136
+ + R++ T Y F D RRD TINA+ + VI
Sbjct: 54 THEEYALARTERKTAAGYHGFQFYYAPDVTLDEDLARRDLTINAMAREVSPDGSLAGPVI 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK- 195
D G DLR R + + +ED +RILR RF A + + D L +
Sbjct: 114 DPFDGQADLRARVFRHV---SDAFVEDPVRILRIARFAARFTGFAVADDTLALMRRMVDA 170
Query: 196 -GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L +ER+W E+ + L P + G I +V + E
Sbjct: 171 GEVDALVAERVWQELARGLMEARPSRMFDALRECGALARILPEVDALWGVPQRADYHPEV 230
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ V + + S+ + + + S+ +K
Sbjct: 231 DTGVH----VMMAVDHAAKQGYSLAVRFAALTHDLGKATTPEDVLPRHIGHEGRSVDLLK 286
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++ +KP
Sbjct: 287 PLCDRLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRLFERTDALRKP 336
>gi|218678591|ref|ZP_03526488.1| Polynucleotide adenylyltransferase region [Rhizobium etli CIAT 894]
Length = 134
Score = 86.4 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH----- 342
L ++ +S ++L Y G + +LK+ LA+
Sbjct: 4 SNAEAATLKAWAMAAPVNDEMSSAAFERLLYRNGQDGITTRLKLALAVARGKAEGDLGEM 63
Query: 343 QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402
+ + ++L +WKKP FPL G DV+ GI PG +VG +L + +W+ +F +
Sbjct: 64 ARSARLTKLLDQAANWKKPQFPLNGGDVLSAGIAPGPRVGELLGSLECQWVEENFASDRA 123
Query: 403 DLHHLLRK 410
L L++
Sbjct: 124 VLLVRLQE 131
>gi|206558959|ref|YP_002229719.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia cenocepacia J2315]
gi|226702042|sp|B4E8K1|CCA_BURCJ RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|198034996|emb|CAR50868.1| tRNA nucleotidyltransferase [Burkholderia cenocepacia J2315]
Length = 413
Score = 86.4 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 119/349 (34%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P+++ + ++ P + + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQM----TAQGFR--PVGKDF--PVFLHPQT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ R++ T Y F D RRD TINA+ + + VID
Sbjct: 55 QEEYALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREVSPEGTLVGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
G DLR R + + +ED +RILR RF A + + + + L +
Sbjct: 115 PFDGQADLRARVFRHV---SDAFVEDPVRILRIARFAARFADFTVADETLALMRRMVDAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L ER+W EI + L P + + G I +V + E
Sbjct: 172 EVDALVPERVWQEIARGLMEAKPSRMFAVLRDCGALARILPEVDALWGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + S+ + + ++ S+ +K
Sbjct: 232 TGVHVMMVVDYAAKQG----YSLAVRFAALTHDLGKGTTPADVLPRHVGHESRSVELLKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++ +KP
Sbjct: 288 LCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRLFERSDALRKP 336
>gi|170734383|ref|YP_001766330.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia cenocepacia MC0-3]
gi|226702041|sp|B1JZZ7|CCA_BURCC RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|169817625|gb|ACA92208.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia cenocepacia MC0-3]
Length = 413
Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 59/346 (17%), Positives = 119/346 (34%), Gaps = 25/346 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P+++ + ++ P + + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQM----TAQGFR--PVGKDF--PVFLHPQT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ R++ T Y F D RRD TINA+ + + VID
Sbjct: 55 QEEYALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREVSPEGALVGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
G DLR R + + +ED +RILR RF A + + + + L +
Sbjct: 115 PFDGQADLRARVFRHV---SDAFVEDPVRILRIARFAARFADFTVADETLALMRRMVDAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L ER+W EI + L P + + G I +V + E
Sbjct: 172 EIDALVPERVWQEIARGLMEAKPSRMFAVLRDCGALARIVPEVDALWGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + + ++ L + ++ + + +
Sbjct: 232 TGVHVMMVVDYAAKQGYSLAVRFAALTHDLGKGTTPADVLPRHV-GHESRSVELLKPLCE 290
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + +A + + + + ++++ +KP
Sbjct: 291 RLRVPNESRDLALVVAREHGNLHRVMEMGAAALVRLFERSDALRKP 336
>gi|254517376|ref|ZP_05129433.1| multifunctional CCA protein [gamma proteobacterium NOR5-3]
gi|219674214|gb|EED30583.1| multifunctional CCA protein [gamma proteobacterium NOR5-3]
Length = 430
Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 76/417 (18%), Positives = 128/417 (30%), Gaps = 71/417 (17%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+N V++ D P ++ + K P + +
Sbjct: 4 YLVGGAVRDELLNYPVKEQDWVVVGATPQELLDLGYTQVGKDFPVF--------LHPQSK 55
Query: 89 FDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ G + D RRD TINA+ D G +ID GG D
Sbjct: 56 EEYALARTERKKGHGYTGFETHYDPNVTLEEDLQRRDLTINAIAKDDDGSLIDPYGGAKD 115
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKIL 200
L +R ++ + LED LR+LR RF A Y + I A+ L+ L
Sbjct: 116 LESRLLRHV---SDAFLEDPLRVLRVARFAARYAHLGFAVAEETLILMTDIVAQGELEYL 172
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV----- 255
ERIW E + L ++P I + G K + +V+ + E
Sbjct: 173 PPERIWVETERALRERDPQVFIEVLQQCGALKALLPEVEGLFGVPQKANYHPEIDTGVHV 232
Query: 256 ----------------------------------------FEWKIDSLLRFIVLISWQDK 275
D +L
Sbjct: 233 LMVIKQAALLSRRALASDTANSPESGNSQVVFAALTHDLGKGITPDDVLPSHRGHETAGL 292
Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY---GDKVMIAKLKIF 332
+ + + +P R ++ + + + L L G + + +
Sbjct: 293 PLVEDVCARLKVPNAHRQLALTVCEYHLHMHRARELRGETLLKLLEATGALRQPERFESY 352
Query: 333 LALHYNNLTHQDTCFILQV--LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
L + + + K +T D+ G+ GK +G+ L
Sbjct: 353 LMACEADSRGRKGLEDQDYPQADYLRRAKDIAMAVTIADLDVSGL-EGKAIGDALTK 408
>gi|320333886|ref|YP_004170597.1| polynucleotide adenylyltransferase region [Deinococcus maricopensis
DSM 21211]
gi|319755175|gb|ADV66932.1| Polynucleotide adenylyltransferase region [Deinococcus maricopensis
DSM 21211]
Length = 474
Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 7/186 (3%)
Query: 4 IVQHKW--FHDSDLINILS--LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDR 58
+ W D +L L + +VGGAVRD+L+ + D+D+ T
Sbjct: 104 LAGRVWSALRPEDARVLLDLQALAGRGARVVLVGGAVRDALLGGTPSDLDVVVTGADVPA 163
Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYF-DITTLRSDLITDGRYAKVVFTRDWKADS 117
+ +S T ++G + + D+ R++ D
Sbjct: 164 LAAHWSAEHGGRALTHEAFGNATLTLPGERTLDLIRARTEQYPMPGANPEPRPGTLAQDL 223
Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RRDF++NAL + + G ED R++R R A
Sbjct: 224 ARRDFSVNALALPAGEDGLLDLHGGLGDLQARTLRP-LHARSFREDPSRLVRGARLGARL 282
Query: 178 GEKNID 183
G
Sbjct: 283 GFAAHP 288
Score = 46.7 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
PLTG DV G+PPG VG L H Q + +E+ LR +
Sbjct: 419 PLTGRDVTALGVPPGPAVGRALGHLAQLRRAGVVRSREEE-QAALRAYLTE 468
>gi|119468921|ref|ZP_01611946.1| tRNA nucleotidyl transferase [Alteromonadales bacterium TW-7]
gi|119447573|gb|EAW28840.1| tRNA nucleotidyl transferase [Alteromonadales bacterium TW-7]
Length = 417
Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 64/265 (24%), Positives = 108/265 (40%), Gaps = 23/265 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD L+N++ +D D P + + +P + + K
Sbjct: 8 VYLVGGAVRDKLLNIASKDNDYVVIGETPSTMESL------GFLPIGSDFPVY--LHPKT 59
Query: 88 YFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y V + + D RRD TIN++ D+ GK+ID G +
Sbjct: 60 KEEYALGRTERKSGKGYTGFVVDASPSVTLEEDLARRDLTINSMALDENGKIIDPFNGQH 119
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI---KAKKGLKIL 200
DL+N+ ++ A +ED +R+LR RF A YG A + K K L L
Sbjct: 120 DLQNKILRHTTHA---FVEDPVRVLRIARFLARYGSDWQIHPSTYALMRELKNKGELNHL 176
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER+W E K L K+P + G IF +++++ E
Sbjct: 177 VPERVWLETEKALGEKHPELYFQALDGLG----IFPEIEQMKNVPQPANHHPEGDVFVHT 232
Query: 261 DSLLRFIVLISWQDKKSILSMAKKF 285
+LR +++ + ++ F
Sbjct: 233 MLVLRRAADLNFNLETRFAALTHDF 257
>gi|90416508|ref|ZP_01224439.1| tRNA nucleotidyltransferase [marine gamma proteobacterium HTCC2207]
gi|90331707|gb|EAS46935.1| tRNA nucleotidyltransferase [marine gamma proteobacterium HTCC2207]
Length = 410
Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats.
Identities = 67/411 (16%), Positives = 137/411 (33%), Gaps = 57/411 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGAVRD L+N + D P++++ + +P + I
Sbjct: 2 KIYRVGGAVRDKLLNYFSDENDWLVVGATPEKMVEL------GYLPVGNDF--PVFIKPN 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFT----RDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D +RRD TINA+ D +G++ D G
Sbjct: 54 TGEEYALARTERKSGHGYGGFTFHAAADVSLEEDLVRRDLTINAMAEDDEGQLYDPYNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL + ++ + ED LR+LR RF A Y +
Sbjct: 114 ADLDKKILRHV---SEAFTEDPLRVLRVARFAARYHHLGFTIAPETMELMTAIASSGELD 170
Query: 203 E----RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------------SL 243
R+W E ++ L ++P I + G +F +V + +
Sbjct: 171 YLVAERVWKETDRALGERSPDIFIDVLRQCGALDVLFPEVSRLFGVPQRADYHPEIDTGI 230
Query: 244 DQLSQVIEAEQVFE----------------WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287
L + ++ ++ + D +L + + + +F +
Sbjct: 231 HTLMALQQSVRLSDSSKIRFSVLVHDLGKGITPDHVLPSHRGHEARGVPLVNDVCDRFKV 290
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY---GDKVMIAKLKIFLALHYNNLTHQD 344
P ++R + + + + + L G +L+ F+ + +
Sbjct: 291 PNDVRQLALVVTEYHLMCHKAEELKPETIVNLLKGVGALKSRERLEDFILCCEADARGRT 350
Query: 345 TCFILQV--LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393
+ + + ++ D+V+ GI G ++G L + +
Sbjct: 351 GFEDREYPSSDYLRAALDGISDISVADLVEAGID-GAEIGRQLHLRRTARM 400
>gi|326571558|gb|EGE21573.1| tRNA nucleotidyltransferase [Moraxella catarrhalis BC7]
Length = 389
Score = 86.0 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 74/388 (19%), Positives = 140/388 (36%), Gaps = 45/388 (11%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ +VGGAVRD+++ L + D D +V+ I + + + K
Sbjct: 2 QVYLVGGAVRDAVLGLPITDKDFMVVGAAPQVL-----LDLGFIQVGVDF--PVFLHPKT 54
Query: 88 YFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYA---------DQQGK 134
+ R + + + + + D +RRD TINAL GK
Sbjct: 55 QAEYALARIERKSGVGHTAFQVHADPSVRLEEDLIRRDLTINALAIEVKGLFNETPMTGK 114
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VAS 190
VID+ GGL D++NRT++ + ED LR+LR RFFA + +
Sbjct: 115 VIDFYGGLTDIQNRTLRHV---SPAFSEDPLRVLRVARFFARFAPLGFSIHDSTAKLMQD 171
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---SLDQLS 247
I + LS ER++SE K + I ++ I I + + ++
Sbjct: 172 IAKSGEMSSLSRERLYSEFVKAMRQPQGDQFIACLHQLDILPFILPTLAQHFNTPQNRQR 231
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF---- 303
+ F +L+S K + + + P+ IR F+ +F + +
Sbjct: 232 TFTRLALACTLNLPIFSHFAMLLSDLPKDDLSDCLNRLNAPKSIRQFIQTFNHFHDTFIA 291
Query: 304 --NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
N ++ E+ + + D + +L + + ++ ++
Sbjct: 292 LPNISGNALLELLERTQAHKDSTKLIQLYDACHAYQGSPLSYPKQWLFDAITCHQSISIA 351
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCK 389
T + K K +G+ L + +
Sbjct: 352 DIDPT---LTK------KAIGDALSYLR 370
>gi|332534880|ref|ZP_08410702.1| tRNA nucleotidyltransferase [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035679|gb|EGI72168.1| tRNA nucleotidyltransferase [Pseudoalteromonas haloplanktis
ANT/505]
Length = 419
Score = 86.0 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 64/266 (24%), Positives = 105/266 (39%), Gaps = 23/266 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+N+ +D D P + + +P + + K
Sbjct: 7 QVYLVGGAVRDKLLNIKSKDNDYVVIGETPKTMESL------GFVPIGSDFPVY--LHPK 58
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y V T + D RRD TIN++ D+ G +ID G
Sbjct: 59 TKEEYALGRTERKSGKGYTGFVVDASPTVTLEEDLARRDLTINSMALDEHGNIIDPFNGQ 118
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI---KAKKGLKI 199
DL+N+ ++ A +ED +R+LR RF A YG A + K K L
Sbjct: 119 TDLQNKILRHTTAA---FVEDPVRVLRIARFLARYGSDWRIHPSTYALMRELKNKGELNH 175
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L ER+W E K L K+P + G IF +++ + E
Sbjct: 176 LVPERVWLETEKALGEKHPELYFEALQGLG----IFPELERMVNVPQPANHHPEGDVFVH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKF 285
+LR +++ + ++ F
Sbjct: 232 TMLVLRRAADLNFDLETRFAALTHDF 257
>gi|325526511|gb|EGD04073.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia sp. TJI49]
Length = 360
Score = 86.0 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 66/349 (18%), Positives = 117/349 (33%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P++++ ++ P + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQMIA----QGFR--PVGKDF--PVFLHPDT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ + R++ T Y F D RRD TINA+ + VID
Sbjct: 55 HEEYALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMARELSPDGALVGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
GG DL R + + +ED +RILR RF A + E + + L + +
Sbjct: 115 PYGGQADLHARVFRHV---SDAFVEDPVRILRIARFAARFAEFTVADETLALMHRMVEAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L ER+W E+ + L P + + G I +V + E
Sbjct: 172 EVDALVPERVWQELARGLMEAKPSRMFAVLRDCGALARILPEVDGLWGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + S+ + + + S+ +K
Sbjct: 232 TGVHVMMVVDYAAKQG----YSLPVRFAALTHDLGKATTPADVLPRHVGHEGRSVDLLKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L I +A + NL +++ +KP
Sbjct: 288 LCERLRVPNECRDLAIVVAREHGNLHRVMEMGAAALVRFFERTDALRKP 336
>gi|87301822|ref|ZP_01084656.1| poly A polymerase family protein [Synechococcus sp. WH 5701]
gi|87283390|gb|EAQ75345.1| poly A polymerase family protein [Synechococcus sp. WH 5701]
Length = 421
Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 72/379 (18%), Positives = 133/379 (35%), Gaps = 24/379 (6%)
Query: 31 IVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+ D+D+ + S+ G++ ++ ++
Sbjct: 50 LVGGAVRDGLLGRLGPQPDLDLVVPGDAITLCNRLSRHHG---------GSVVVLDAERS 100
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG--KVIDYVGGLNDLR 146
LR + R D ++D RRDF +NAL +++D GGL DL
Sbjct: 101 IARLVLRGWSLDLAR----QVGDDLESDLWRRDFRLNALALPLLPGSELLDPTGGLEDLV 156
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
+ + + + +L+D LR+LR R A G ++ + + ++ ER+
Sbjct: 157 RGELVAVREVN--LLDDPLRMLRGVRLAAELGF-RLEPRTRGWIERHHGHISQVAPERVL 213
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
E+ KL +A + + G+ E Q + A E L
Sbjct: 214 QELEKLAQAPGGGTGLEEALSCGLLDPWRSIGPEPLWGQGVWLELALTPGEAARALPLAR 273
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ + L +++ + + + + + L + +
Sbjct: 274 LARVLDAPALERLRSSRQLQQRCGLLRRWLLRLLEGAEGAASGLQRLSEAERLRLHQQLE 333
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385
A L L NL + + H P P+ G + + G+ P +++G +L
Sbjct: 334 ADLPALLLFFPANLAKEWLTRWRNPHDPLFH---PRPPIDGGSLQEHLGLSPSRRLGELL 390
Query: 386 VHCKQEWINSSFQLSQEDL 404
H E Q QE L
Sbjct: 391 AHLTLEAAYGRIQDRQEAL 409
>gi|254246957|ref|ZP_04940278.1| tRNA nucleotidyltransferase/poly(A) polymerase [Burkholderia
cenocepacia PC184]
gi|124871733|gb|EAY63449.1| tRNA nucleotidyltransferase/poly(A) polymerase [Burkholderia
cenocepacia PC184]
Length = 413
Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 59/346 (17%), Positives = 119/346 (34%), Gaps = 25/346 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P+++ + ++ P + + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQM----TAQGFR--PVGKDF--PVFLHPQT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ R++ T Y F D RRD TINA+ + + VID
Sbjct: 55 QEEYALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREVSPEGALVGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
G DLR R + + +ED +RILR RF A + + + + L +
Sbjct: 115 PFDGQADLRARVFRHV---SDAFVEDPVRILRIARFAARFADFTVADETLALMRRMVDAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L ER+W EI + L P + + G I +V + E
Sbjct: 172 EVDALVPERVWQEIARGLMEAKPSRMFAVLRDCGALARILPEVDALWGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + + ++ L + ++ + + +
Sbjct: 232 TGVHVMMVVDYAAKQGYSLAVRFAALTHDLGKGTTPADVLPRHV-GHESRSVELLKPLCE 290
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+ + +A + + + + ++++ +KP
Sbjct: 291 RLRVPNESRDLALVVAREHGNLHRVMEMGAAALVRLFERSDALRKP 336
>gi|320160822|ref|YP_004174046.1| putative tRNA nucleotidyltransferase [Anaerolinea thermophila
UNI-1]
gi|319994675|dbj|BAJ63446.1| putative tRNA nucleotidyltransferase [Anaerolinea thermophila
UNI-1]
Length = 509
Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 63/275 (22%), Positives = 118/275 (42%), Gaps = 23/275 (8%)
Query: 7 HKWFHDSDLINILSLLNKGEDKS--CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ SDL IL ++++ D +VGGAVRD L+ + D+D P + R +
Sbjct: 3 QPF--SSDLKRILQVVSRASDDVPVYLVGGAVRDHLLGVESHDLDFCLNASPIPLARRVA 60
Query: 65 KT-RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
T++++ + I L + D +RDFT
Sbjct: 61 NALNAGFFLLDEQRETVRVVVHEPDGSINYLDFARFRED---------SLVEDLWKRDFT 111
Query: 124 INALYADQQG-----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
INA+ Q ++ID GGL DLR++ +K D+ +D +R+LR RF A
Sbjct: 112 INAMALPVQEDSILLQLIDPCGGLQDLRDKRLKACSDSA--FEDDPVRVLRLIRF-AQKL 168
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ID L + + L+ +S+ER EI ++LE+ + + + +F ++
Sbjct: 169 RFHIDPQTLQDARSSVPSLERVSAERKRDEIFQILESPGARVGVDLLDRLKVLPVVFPEL 228
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQ 273
+++ + S V+ ++++ R +L++
Sbjct: 229 EKLKGVKQST-PHVHDVWRHTLETVSRLEILLNVL 262
Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 10/133 (7%)
Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ + +I + G V + L A + + LT + L+V
Sbjct: 368 HMRIHWLVSEGQPPSPRAIYRFFRDLGEAGVDVCLLSLSDLWATYSHTLTQEQWVSELKV 427
Query: 352 LSDI--IHWKK------PLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402
+ W+K P + G +++ + G+ PG +G L ++ + L ++
Sbjct: 428 CRALLEAKWEKENILITPPVLIKGGELIRELGLQPGPLIGQTLEAIREAQVEGMV-LDKQ 486
Query: 403 DLHHLLRKLIASS 415
R+ I S
Sbjct: 487 SALAFAREWINKS 499
>gi|189485066|ref|YP_001956007.1| CCA-adding tRNA nucleotidyltransferase [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287025|dbj|BAG13546.1| CCA-adding tRNA nucleotidyltransferase [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 481
Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 76/479 (15%), Positives = 138/479 (28%), Gaps = 105/479 (21%)
Query: 17 NILSLLNK--GEDKSCIVGGAVRDSLMNLSVQDIDIATTILP----DRVMRIFSKTRYKV 70
++ +N + GG RD L+ S DID+A + ++ +F+ +
Sbjct: 3 KLIKKINNLSKDFDIYATGGFSRDLLLKRSPIDIDLAVSRNALKYSKKIADVFNSKLITL 62
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA- 129
T +Y I DI+ K D RDFTINA
Sbjct: 63 NDTRKTYRIILKDDVITNIDISLFNGK--------------TIKQDLQNRDFTINATAFN 108
Query: 130 ---DQQGKVIDYVGGLNDLRNRTIKFIGDAH-HRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ K + N LR+ K + D LR+LR FRF A I
Sbjct: 109 LKNFKNFKKHIILSDRNTLRDLKSKIVNTVSAESFKTDPLRMLRAFRFAAELNF-KISKK 167
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN-----------------G 228
IK K ++ + ERI +E ++L KN I M +
Sbjct: 168 TFKQIIKNAKLIRQSAPERIKNEFFRVLSVKNSAALIKDMDDCGLLSEIFAEIKKMKKTC 227
Query: 229 GIFKEIFLDVQEISLDQLSQVIEAEQVFEW-----------------------KIDSLLR 265
+ + + S + + + +SLL+
Sbjct: 228 RKYYYHPGGLFQHSFETVESAENILNNLKKYFPENYADMQKHFDNNATFSENITRESLLK 287
Query: 266 FIVLISW---------------------QDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
F L + + + + + +
Sbjct: 288 FAALFHDSAKPETAKFENGKMHFLGHEELGAGKVKEIMLSLKSSKNDIETAVFLVSNHMR 347
Query: 305 QKTLSIPEIK------KLFYLYGDKVMIAKLK-----------IFLALHYNNLTHQDTCF 347
TL+ I K F GD + + L +
Sbjct: 348 PSTLTRNNIVTKKAALKFFRDIGDNTPDLLVLSMSDWHSYKKLKVFSSKGLKLQEKSVRE 407
Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+L+ ++ + + + G+ ++K + + PG +G +L + + + + E L
Sbjct: 408 LLKYYYELKNAEPLSKIIDGNIIMKKFNLKPGPWIGELLNFATETQLEGTIFNTDEALK 466
>gi|117925236|ref|YP_865853.1| polynucleotide adenylyltransferase region [Magnetococcus sp. MC-1]
gi|117608992|gb|ABK44447.1| Polynucleotide adenylyltransferase region [Magnetococcus sp. MC-1]
Length = 393
Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 71/388 (18%), Positives = 128/388 (32%), Gaps = 41/388 (10%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTIL-PDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGG+VRD L+ +D D P+++ ++ K P +
Sbjct: 19 LYEVGGSVRDRLLGQRPRDQDWVVVGACPEQLQQLGYKKVGADFPVF--------LHPYT 70
Query: 88 YFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R + G + T + D RRD TINA+ G++ID GG+
Sbjct: 71 QEEYALARRERKQGCGYLGFAVEAPPTVTLEQDLARRDLTINAMARTLDGQLIDPYGGVQ 130
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK----I 199
DL+NRT++ + A ED LR+LR R A D + + +
Sbjct: 131 DLQNRTLRHVTAA---FAEDPLRVLRVARLLARLAPMGFAVDPATERLCRQLVAQGELGH 187
Query: 200 LSSERIWSEINKLLEAKNPLNA--IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
+ ER+W E K L V L + +LS
Sbjct: 188 VCPERVWRESQKGLLEPRGDRFAQFVQQIGVEFIPSQRLHPAACAFSRLSMACAQPGDVT 247
Query: 258 WKIDSLLRF---IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
++ + L Q + ++AK+ +LP+ ++ + + + S+
Sbjct: 248 VRLVAWLWDLLAQAGEEAQGDVWLHALAKRLALPKGLQREAAWLLS-HLSVGMASVTADV 306
Query: 315 KLFY-----LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ Y L+G + +L + + W+
Sbjct: 307 EGLYALLEGLHGGLRQPRTAQFLQLCQIEQTLFHGADRLLGIKKAMKIWQSVKP----QA 362
Query: 370 VVKYGIPPGKKVGNILV-----HCKQEW 392
++ G G ++G L +Q+W
Sbjct: 363 IMADGYK-GAELGQRLKFERLQQLRQQW 389
>gi|326567321|gb|EGE17436.1| tRNA nucleotidyltransferase [Moraxella catarrhalis BC1]
Length = 389
Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 74/389 (19%), Positives = 140/389 (35%), Gaps = 47/389 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD ++ L + D D P ++ + I + + + K
Sbjct: 2 QVYLVGGAVRDGVLGLPITDKDFMVVGATPQVLLDL------GFIQVGVDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYA---------DQQG 133
+ R + + + + + D +RRD TINAL G
Sbjct: 54 TQAEYALARIERKSGVGHTAFQVHADPSVRLEEDLIRRDLTINALAIEVKGLFDETPMTG 113
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VA 189
KVID+ GGL D++NRT++ + ED LR+LR RFFA + +
Sbjct: 114 KVIDFYGGLTDIQNRTLRHV---SPAFSEDPLRVLRVARFFARFAPLGFSIHDSTAKLMQ 170
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---SLDQL 246
I + LS ER++SE K + I ++ I I + + ++
Sbjct: 171 DIAKSGEMSSLSRERLYSEFVKAMRQPQGDQFIACLHQLDILPFILPTLAQHFNTPQNRQ 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF--- 303
+ F +L+S K + + + P+ IR F+ +F + +
Sbjct: 231 RTFTRLALACTLNLPIFSHFAMLLSDLPKDDLSDCLNRLNAPKSIRQFIQTFNHFHDTFI 290
Query: 304 ---NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
N ++ E+ + + D + +L + + ++ ++
Sbjct: 291 ALPNISGNALLELLEHTQAHKDSTKLIQLYDACHAYQGSPLSYPKQWLFDAITCYQSIGI 350
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
T + K K +G+ L + +
Sbjct: 351 ADIDPT---LTK------KAIGDALSYLR 370
>gi|222824008|ref|YP_002575582.1| tRNA nucleotidyltransferase/formyltetrahydrofolate deformylase
[Campylobacter lari RM2100]
gi|222539230|gb|ACM64331.1| tRNA nucleotidyltransferase/formyltetrahydrofolate deformylase
[Campylobacter lari RM2100]
Length = 644
Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 71/404 (17%), Positives = 135/404 (33%), Gaps = 50/404 (12%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYK 69
+D D + I ++L ++ +VGG VR+S ++LS D DI I P + K
Sbjct: 10 NDQDFLRIKNILKPYTQRAYLVGGCVRNSFLDLSSDDYDIEIYDIEPQIFDDLMQKLG-- 67
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINAL 127
S+ + + K FD+ R + + D + + RRDFTINAL
Sbjct: 68 ANGVGKSF----FVYKYKKFDLALARYENKISTGHRGFEVKVCNDEQEGAKRRDFTINAL 123
Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ K +D+ GL DL+ + I+ +ED LR+LR F +
Sbjct: 124 MVNIFDFKFLDFFNGLQDLQAKIIR--HIDDKSFVEDSLRVLRGISFACRFDLTIARESL 181
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ L +I K + ++E
Sbjct: 182 KLMQTMDISDLSKERINNELYKIFKTSRLNKAYEYFKILN-----------LEEKIFFYQ 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
S E E++ E + D+ L + F + +F + +K
Sbjct: 231 SHNKEFERLLEHSQKLIC---------DEALYLYLYLNFFRINKEEFFKKTKLKKELLKK 281
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ K+ K+ + ++N I ++
Sbjct: 282 CEQGFILGKIDDFNLAKIALKIPLCKWLGLWDNERITQAKKINLYYHTFESK------IS 335
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+D++K G GK++G ++ + ++L + +++
Sbjct: 336 ANDLLKEGF-NGKELGI---ELEKRRL--------QELKNYIKE 367
>gi|93005824|ref|YP_580261.1| polynucleotide adenylyltransferase region [Psychrobacter
cryohalolentis K5]
gi|92393502|gb|ABE74777.1| Polynucleotide adenylyltransferase region [Psychrobacter
cryohalolentis K5]
Length = 390
Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 66/401 (16%), Positives = 128/401 (31%), Gaps = 52/401 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ ++D D ++ + P +
Sbjct: 2 QVYLVGGAVRDQLLGRPIKDKDFVVVGATVTEMLEAGFQQVGADFPVF--------LHPV 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYA---------DQQG 133
+ R++ G K D RRD TINA+ G
Sbjct: 54 NREEYALARTERKQGLGYQGFSVHASIDVSLKDDLQRRDLTINAMAIEVTSLTDDTPISG 113
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
VIDY GGL D+ N+T++ + ED LR+LR RF++ Y + +
Sbjct: 114 DVIDYYGGLQDIENKTLRHV---SSAFNEDPLRVLRTARFYSRYYDLGFTIADDTLVLMR 170
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
+ + I + + + + L Q +
Sbjct: 171 ELVASGELTHLSSERIWQESSRAM----MQLSPQVYWQQLFDIGALAEYFAPLHQAWNDD 226
Query: 254 QVFEW-KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
Q+ E + + ++ + +++ ++ K SL + I+ + ++
Sbjct: 227 QLRETVQTSLYFAGQMHLNLSQRWALVMVSLKPSLFQNKHTEAITAVKSINDIGNMAKVP 286
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNL--------THQDTCFILQVL------SDIIHW 358
+ + KL + L H++ + Q+L I
Sbjct: 287 KAQTQFASLFVQQADKLSVITQLSAAEKIDLIQACSAHKEPEKLSQLLVTSQVLQLSIQH 346
Query: 359 KKPLFPLT-----G-DDVVKYGIPPGKKVGNILVHCKQEWI 393
++ + L G +D + + G +G L C+ E +
Sbjct: 347 RQMMLALNSFHSIGMND-IDQSLK-GPAIGKALRQCRIEHL 385
>gi|255075261|ref|XP_002501305.1| predicted protein [Micromonas sp. RCC299]
gi|226516569|gb|ACO62563.1| predicted protein [Micromonas sp. RCC299]
Length = 712
Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 18/221 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVM----RIFSKTRYKVIPTS--------- 74
+ GG VRD L+ DIDIA ++ + + +
Sbjct: 172 LRVAGGWVRDKLLGKHSSDIDIALDTMMGEEFAAKVNEYLQEKGEETHGVGVIQSNPDQS 231
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
T + ++ D+ LRS+ T+ + D+ RRD TIN+L+ + +
Sbjct: 232 KHLETATMRVHGQWLDLVNLRSEEYTEASRIPEMKFGSATDDAYRRDLTINSLFYNINLR 291
Query: 135 VIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVAS 190
++ G+ DL++ ++ L+D LRILR RF + +G + +
Sbjct: 292 CVEDFTGMGLKDLQDGVVRTPLPPRTTFLDDPLRILRSVRFASRFGFSLDDAIVHAATDA 351
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231
+K L +S ER+ E+ +L +P +A+ + +F
Sbjct: 352 EVQEKLLSKVSRERVGKEVQGMLRGPSPGDALSLLCRFNLF 392
>gi|161526195|ref|YP_001581207.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia multivorans ATCC 17616]
gi|189349089|ref|YP_001944717.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia multivorans ATCC 17616]
gi|221199728|ref|ZP_03572771.1| multifunctional CCA protein [Burkholderia multivorans CGD2M]
gi|221208667|ref|ZP_03581667.1| multifunctional CCA protein [Burkholderia multivorans CGD2]
gi|221215561|ref|ZP_03588524.1| multifunctional CCA protein [Burkholderia multivorans CGD1]
gi|226702043|sp|A9ABP3|CCA_BURM1 RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|160343624|gb|ABX16710.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Burkholderia multivorans ATCC 17616]
gi|189333111|dbj|BAG42181.1| tRNA nucleotidyltransferase [Burkholderia multivorans ATCC 17616]
gi|221164549|gb|EED97032.1| multifunctional CCA protein [Burkholderia multivorans CGD1]
gi|221171478|gb|EEE03925.1| multifunctional CCA protein [Burkholderia multivorans CGD2]
gi|221179967|gb|EEE12371.1| multifunctional CCA protein [Burkholderia multivorans CGD2M]
Length = 413
Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 118/349 (33%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P++++ ++ P + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQMIA----QGFR--PVGKDF--PVFLHPDT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ + R++ T Y F D RRD TINA+ + VID
Sbjct: 55 HEEYALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREVSPDGTLIGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
G DLR R + + +ED +RILR RF A + + + D L +
Sbjct: 115 PFDGQRDLRARVFRHV---SDAFVEDPVRILRLARFAARFADFTVADDTLALMRRMVDAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L ER+W E+ + L P + + G I +V + E
Sbjct: 172 EVDALVPERVWQELARGLMEAKPSRMFAVLRDCGALARILPEVDGLWGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + + + S+ + + + S+ +K
Sbjct: 232 TGVHVMMVVDYAA----KQRYSLPVRFAALTHDLGKATTPDDVLPRHTGHEGRSVDLLKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL +++ +KP
Sbjct: 288 LCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRFFERTDALRKP 336
>gi|87123612|ref|ZP_01079463.1| Poly A polymerase family protein [Synechococcus sp. RS9917]
gi|86169332|gb|EAQ70588.1| Poly A polymerase family protein [Synechococcus sp. RS9917]
Length = 415
Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/388 (14%), Positives = 123/388 (31%), Gaps = 21/388 (5%)
Query: 29 SCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGA+RD L+ D+D+ + ++ +G +++
Sbjct: 42 AALVGGAIRDGLIGRLRPQPDLDLVVPENALELTARLAQ----------EHGGARVVLD- 90
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146
R L D +AD RRDF +NA+ +
Sbjct: 91 --AQRDMARLVLRGWTLDLARQDGADLEADLWRRDFRLNAIALVIDPQPQLLDPTGGLDD 148
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
R + A H +++D LR+LR R A ++D+ + + + L + ERI
Sbjct: 149 LRAGRLAAIAEHNLIDDPLRLLRGVRLLAELPF-SLDTATMAMLRRQRALLARAAPERIQ 207
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
+E+ +L+ +A+ + N + K + +Q
Sbjct: 208 AELLRLVAGPQADHALEVLDNLQLLKPWQEREGPPPAALPVRGAGLDQAAAALNPDERDQ 267
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ + + ++ + + + + + L ++ +
Sbjct: 268 ALPLLRLTACLGDRGLQSLRFSKKQCQRCARLRHWLTRLEQAADDTLAEPERL---QLHL 324
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNIL 385
AL + ++++ P L G + + +P G +G +L
Sbjct: 325 ELENDLPALILQLPAERRDHWLMRWRDGSDPLFHPRAALDGRTLQRELELPQGPLLGRLL 384
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIA 413
H K+E +ED R +
Sbjct: 385 HHLKRERAFGRIH-DREDCLAASRTWLK 411
>gi|33860701|ref|NP_892262.1| poly A polymerase family protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33633643|emb|CAE18600.1| Poly A polymerase family [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 415
Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 66/379 (17%), Positives = 122/379 (32%), Gaps = 29/379 (7%)
Query: 30 CIVGGAVRDSLMNLSVQ--DIDIATTILPDRV-MRIFSKTRYKVIPTSISYGTIKIICRK 86
+VGG +RD ++ D+DI V +I K K I + ++II +
Sbjct: 47 FLVGGYIRDLILGRLNSVIDVDILVPKNAINVGKKIADKFEGKFIILDEARDVVRIIFKH 106
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146
DI + + D L RDF+INA+ + K++
Sbjct: 107 ISIDIAS--------------QISPSIDIDLLSRDFSINAIAFSFEEKLLIDPSNGIKDL 152
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
++ +L+D LRILR FRF + + + + + +
Sbjct: 153 QLAFLRT-NSKQNLLDDPLRILRCFRFISELDFNVDVTLIDFIKTYKNQLRLVANERINY 211
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
I +++ AI+ + IF I + I LD E FE + L +
Sbjct: 212 E-IQRIIRGGKASQAIILINKFKIFDYIQSEKNLIFLDLEKINFEEFNKFEKEKFLPLFY 270
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+V I K + + N K +I E + + +
Sbjct: 271 LVQILD------EFSLKNLKFSKSEISKIRLLRKWNLLLKVQNIYEFNEKERFDLHQELE 324
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385
L F+ + ++ + P + G+ + K I G +G ++
Sbjct: 325 TILPSFILFLPKSF---YVNWLARWRDKDDKLFHPSNLIKGNVLKKYLKIQDGPILGKVI 381
Query: 386 VHCKQEWINSSFQLSQEDL 404
+ E + E +
Sbjct: 382 NYLSMELAYNRLNNFDEAI 400
>gi|327479266|gb|AEA82576.1| tRNA nucleotidyl transferase [Pseudomonas stutzeri DSM 4166]
Length = 391
Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 73/386 (18%), Positives = 134/386 (34%), Gaps = 47/386 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ VGGAVRD L+ +V ++D P+ + ++ P + + +
Sbjct: 2 QIYKVGGAVRDRLLGRAVIEVDWVVVGATPEVM----QAQGFR--PVGADF--PVFLHPQ 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ + Y F + D RRD TINA+ D+QG++ID GG
Sbjct: 54 SGEEYALARTERKSGRGYGGFTFHASPEVTLEEDLQRRDLTINAIAEDEQGQLIDPYGGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
DL+ R ++ + ED LR+LR RF A Y E + +
Sbjct: 114 RDLQARLLRHV---SPAFAEDPLRVLRVARFAARYAELGFRIADETLELMRQLARSGELS 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ----------EISLDQLSQ 248
++ER W EI++ L P I + E+F ++ E L L +
Sbjct: 171 ALTAERSWKEISRALMEPRPDVFIQVLQACHALPELFPELAASFEEQSAYGEALLGALRR 230
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI------SFFNCN 302
+ Q + LL + + + ++A + R +
Sbjct: 231 CAKHAQPLPVRWTCLLLGSAGPAASQEARLQAIAALNQRCKAPRDCQELAMLFGRYHQDA 290
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
+ +TL + + + + + F+A L + + K
Sbjct: 291 LDARTLPAEALLDMLQHFDIYRRPERFEHFIAACEMTAPADGAAQSLPQVDYLRAAAK-- 348
Query: 363 FPLTGDD-----VVKYGIPPGKKVGN 383
T D +++ G G ++G
Sbjct: 349 ---TARDVAIKPLLEQGHQ-GAELGK 370
>gi|253745016|gb|EET01131.1| tRNA-nucleotidyltransferase, putative [Giardia intestinalis ATCC
50581]
Length = 529
Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 67/259 (25%), Positives = 109/259 (42%), Gaps = 18/259 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPT 73
L++ L+L NK + + GG VRD L+ DIDIA + + + ++
Sbjct: 29 LLDALALANKHDTTLRVAGGWVRDKLLGYESHDIDIAVDNMTGVELGTLINEYILSRGDI 88
Query: 74 SISYG-------------TIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLR 119
G T I D+ LR D R V D+LR
Sbjct: 89 VHKMGVVSQNPEKSKHLETACITVCGYDVDLVNLRAESYQEDSRVPSAVVFGTPYEDALR 148
Query: 120 RDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RDFTINAL+ + K I+ G+ DL+N I+ D + +D LRILR RF
Sbjct: 149 RDFTINALFYNIHTKEIEDFTEHGIIDLQNGLIRTPLDCNITFYDDPLRILRAIRFSNRL 208
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWS-EINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
K + A K + S + ++ E+ ++L +N L+ +++ +F+E+FL
Sbjct: 209 DFKLDEKMYQAAENKELTARLQIVSRQRYNKELAEILSGENALSGFQGLFDMHVFEEVFL 268
Query: 237 DVQEISLDQLSQVIEAEQV 255
+ +S+D+ V +
Sbjct: 269 RILNVSMDKELDVHTIYRR 287
>gi|325980908|ref|YP_004293310.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Nitrosomonas sp. AL212]
gi|325530427|gb|ADZ25148.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Nitrosomonas sp. AL212]
Length = 408
Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 58/336 (17%), Positives = 105/336 (31%), Gaps = 18/336 (5%)
Query: 33 GGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91
GG+VRD L+ L V+D D + P + P + + +
Sbjct: 2 GGSVRDELLGLPVKDHDYVVVGASPGEM------ELLGYRPVGKDF--PVFLHPQTNEQY 53
Query: 92 TTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
R++ Y + D RRD TIN++ D+ G +ID G+ DL
Sbjct: 54 ALARTERKISLGYKGFEVFTSPQVTLQEDLARRDLTINSIAKDENGNIIDPFNGVADLEA 113
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSERIW 206
++ + ED +RILR RF A +G + ++ + G L ER+W
Sbjct: 114 GILRHV---SPAFSEDPVRILRAARFAARFGFRIAPETMMLMNDMVHNGEVDALVPERVW 170
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
E+ + L K P + G I +V + E I L+
Sbjct: 171 QELARGLMEKTPSRMFYMLRECGALARIIPEVDVLFGVPQPAHAHPEIDTGVHI-MLVID 229
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ + + + + + + + +
Sbjct: 230 YAAAQNYSLPVRFAALMHDVGKGTTPFEEWPRHIGHEARSVELTQNLCERIRIPKESRDL 289
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
A L + + +L + ++KP
Sbjct: 290 ALLVARYHGDVHRAEELKPSTLANMLQIVDAYRKPE 325
>gi|255020812|ref|ZP_05292868.1| tRNA nucleotidyltransferase [Acidithiobacillus caldus ATCC 51756]
gi|254969603|gb|EET27109.1| tRNA nucleotidyltransferase [Acidithiobacillus caldus ATCC 51756]
Length = 407
Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/252 (18%), Positives = 83/252 (32%), Gaps = 15/252 (5%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
+VGGAVRD L ++VQD D + ++ + ++ ++
Sbjct: 4 YLVGGAVRDRLRGVTVQDRDYVLVGAGQEDIDALLARGFRW--AGKDFP---VLIGREGE 58
Query: 90 DITTLRSDLITDGRYAKV---VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146
+ R++ T + + D LRRD TINA+ D + I G
Sbjct: 59 EYALARTERKTGSGHRGFVVATAGVSLEDDLLRRDLTINAMAEDLETGAIVDPYGGRR-- 116
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL--KILSSER 204
+ + + ED LR+LR RF A + I + + LS +R
Sbjct: 117 DLDARVLRHVSPAFREDPLRVLRLARFAARLPDFVIAPETEALVRQMIAAGELAELSPDR 176
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---SLDQLSQVIEAEQVFEWKID 261
+W E K L+ ++ +F ++ + L + +
Sbjct: 177 VWKETEKALKGPAASRYFSLLWYWSGLAVLFPELLPLAQSGLPWQRGLAALDHCLHRYGQ 236
Query: 262 SLLRFIVLISWQ 273
L +
Sbjct: 237 PALAWAAFCYPM 248
>gi|330984361|gb|EGH82464.1| polynucleotide adenylyltransferase region [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 450
Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 59/248 (23%), Positives = 91/248 (36%), Gaps = 16/248 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGG VRD L+ L D D PD + P +
Sbjct: 3 CYLVGGYVRDKLLGLDPSDRDFVVINESPDSMRSRGYSLVGNHFPVF--------LHPLS 54
Query: 88 YFDITTLRSDLITDGRYAKV---VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ RS+ T +++ + D RRD+TINA+ G +ID GG ND
Sbjct: 55 GEEYALARSEKSTGKGHSEFECAWKGVTLEDDLYRRDYTINAMAETTDGVLIDPYGGAND 114
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSE 203
L ++ + ED LRILR RF A G + +G+ + LS+E
Sbjct: 115 LEAGMLRHVSPH---FAEDPLRILRGARFAAKLGFSVAPETIDLMRQMVGEGMLETLSAE 171
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
R+W E K + NP+ + G +F ++ + +E +
Sbjct: 172 RLWKETEKAMLTDNPVVFFEVLDACGALDRVFPELAALRGIPQRADFHSEGDAFVHTFMV 231
Query: 264 LRFIVLIS 271
L+ L S
Sbjct: 232 LKEGALYS 239
>gi|71065923|ref|YP_264650.1| tRNA nucleotidyltransferase [Psychrobacter arcticus 273-4]
gi|71038908|gb|AAZ19216.1| probable tRNA nucleotidyltransferase [Psychrobacter arcticus 273-4]
Length = 395
Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 67/399 (16%), Positives = 132/399 (33%), Gaps = 43/399 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ ++D D ++ + P +
Sbjct: 2 QVYLVGGAVRDQLLGRPIKDKDFVVVGATITEMLDAGFQQVGADFPVF--------LHPI 53
Query: 87 KYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV--- 139
+ R++ + G K D RRD T+NA+ + D
Sbjct: 54 SREEYALARTERKQGMGYQGFSIHASSDVSLKDDLQRRDLTVNAMAIEVTSITDDTPISG 113
Query: 140 ---GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIK 192
L + K + ED LR+LR RF++ Y + + +
Sbjct: 114 DVIDYYGGLDDIKSKSLRHVSSAFSEDPLRVLRTTRFYSRYYDLGFTIADDTLALMRELV 173
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI-FKEIFLDVQEISLDQLSQVIE 251
L LSSERIW E ++ + +P +++ G + Q + Q+ ++++
Sbjct: 174 NSGELAHLSSERIWQESSRAMMQLSPQVYWQQLFDIGALTEHFTPLHQAWNDVQIREMVQ 233
Query: 252 AEQVFEWKIDSLL-RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
F ++ L + L+ + SI ++ + E + K
Sbjct: 234 TALYFSGQMQLNLSQRWALLMTSLRPSIFNIKPSDLVDSEAAISTKRIIDIGNMAKVPKS 293
Query: 311 PEIKKLFYLYGDKVMI--------AKLKIFLALHYNNLTHQDTCFIL--QVLSDIIHWKK 360
++ + + K+ + A + + + ++ QVL I +
Sbjct: 294 HTQFASLFVQQVEKLTIVSHITAAEKIDLIQACSAHKAPEKLSQLLVTSQVLQLAIQHCQ 353
Query: 361 PLFPLT-----G-DDVVKYGIPPGKKVGNILVHCKQEWI 393
+ L G D + + G +G L C+ E +
Sbjct: 354 MMLALNSFHAIGMQD-IDQNLK-GPAIGKALRQCRIEHL 390
>gi|255720689|ref|XP_002545279.1| hypothetical protein CTRG_00060 [Candida tropicalis MYA-3404]
gi|240135768|gb|EER35321.1| hypothetical protein CTRG_00060 [Candida tropicalis MYA-3404]
Length = 551
Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 66/354 (18%), Positives = 117/354 (33%), Gaps = 23/354 (6%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVM----RIFSK--------- 65
+ LNK + I GG VRD L+ DIDIA + ++ + K
Sbjct: 49 NKLNKDPLELRITGGWVRDKLLGNDSHDIDIAVNHLTGEQFVNGLHEYLKKYEPELSTNH 108
Query: 66 -TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
K+ P + T D LRS+ T + + D++RRD T
Sbjct: 109 VHTIKMNPEKSKHLETCTTKLFGIDIDFVNLRSEEYTLESRVPTIEFGTPEEDAVRRDAT 168
Query: 124 INALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
+NAL+ + VI+ GL+DL + ++ L+D LRI+R RF + +
Sbjct: 169 LNALFYNLNKSVIEDFTKRGLDDLEHGILRTPLPPIQTFLDDPLRIIRLIRFASRFNFVI 228
Query: 182 IDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG--IFKEIFLD 237
K +S ER+ E+ K+L +KNP + + +
Sbjct: 229 EPETLKAMKDDRNKVALQNKISKERVEIELRKILTSKNPGYGLQLINYVDLAGSIFYVPE 288
Query: 238 V-QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ +E ++ L + + I + E +
Sbjct: 289 LEKEFDIETLQKARTQLAPHMEIASIIYPNFKHIILNSTTKMKHELGTLISSDEFKNIFW 348
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
+ + S+ K +F Y + +K + N + +
Sbjct: 349 LTIILHPYVQVKSLKPNKDIFNQYLRLGLTSKKSDIAKVTAINYNVSQIAKLFE 402
Score = 44.4 bits (103), Expect = 0.037, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKV 381
+ ++ KI A+ ++ +++ + H + G + K G+ PG +
Sbjct: 458 EEIVNDSKINSAISRVVSNYESLFKQIELWD-LKHVDMMKPLIDGTTLSKTLGMKPGPWL 516
Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+++ LS + ++ +I
Sbjct: 517 RPTTEEILIWQLDNP-DLSSDQCLEFVKSII 546
>gi|255657985|ref|ZP_05403394.1| tRNA nucleotidyltransferase [Mitsuokella multacida DSM 20544]
gi|260850186|gb|EEX70193.1| tRNA nucleotidyltransferase [Mitsuokella multacida DSM 20544]
Length = 423
Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 66/400 (16%), Positives = 131/400 (32%), Gaps = 45/400 (11%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD-RVMRIFSKTRYKVIPTSISYG 78
+L + IVGG VRD+L ++ D D + + + ++F + +
Sbjct: 8 KVLRAHGARVFIVGGWVRDALRHVRPHDKDYMVSGIAEVDFQQLFPDAQ----KVGHGFP 63
Query: 79 TIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+ ++ R + G + + D RRD T+N++ + K
Sbjct: 64 VYLVSIDGCLSEVAFARKERKEGQGYRGFRVSYDPSVTVEEDLYRRDTTMNSMALELPAK 123
Query: 135 V-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
ID G D+ I+ + +ED +R LR R A +G +I
Sbjct: 124 TLIDPYHGARDVEKGIIRAVSPH---FMEDPVRALRAARQAAEFGF-SIAEQTSRYMHAC 179
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------------ 241
++ L+ ERI +E+ + L+A+ P + GI F ++ +
Sbjct: 180 REELQHEPQERIIAELRRALQAERPSVFFRALERAGILSVTFPELSLLIGKTQPPEYHPE 239
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR-------YF 294
++ + + RF L+ K + + E R +
Sbjct: 240 GDAWQHTLLVVDGAASKTANVAARFAALVHDLGKGTTPKAMEPHHYGHEQRGLEQLAAWD 299
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ---- 350
++ + + E L IA L + + + LT D +++
Sbjct: 300 RRVTLPKDWLRAGRFLIEQHMRAPLLERPGKIAALLLAIDKQRSVLTLADFNAVIEADHH 359
Query: 351 ----VLSDIIHWKKPLFPLTGDDV-VKYGIPPGKKVGNIL 385
L + ++G D + G+ +G L
Sbjct: 360 SLPDYLRHGERLLAAMHGISGKDAPKEL---RGRAIGQWL 396
>gi|296112681|ref|YP_003626619.1| polynucleotide adenylyltransferase family protein [Moraxella
catarrhalis RH4]
gi|295920375|gb|ADG60726.1| polynucleotide adenylyltransferase family protein [Moraxella
catarrhalis RH4]
gi|326577572|gb|EGE27449.1| tRNA nucleotidyltransferase [Moraxella catarrhalis O35E]
Length = 389
Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 74/389 (19%), Positives = 140/389 (35%), Gaps = 47/389 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD ++ L + D D P ++ + I + + + K
Sbjct: 2 QVYLVGGAVRDGVLGLPITDKDFMVVGATPQVLLDL------GFIQVGVDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYA---------DQQG 133
+ R + + + + + D +RRD TINAL G
Sbjct: 54 TQAEYALARIERKSGVGHTAFQVHADPSVRLEEDLIRRDLTINALAIEVKGLFDETPMTG 113
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VA 189
KVID+ GGL D++NRT++ + ED LR+LR RFFA + +
Sbjct: 114 KVIDFYGGLTDIQNRTLRHV---SPAFSEDPLRVLRVARFFARFAPLGFSIHDSTAKLMQ 170
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---SLDQL 246
I + LS ER++SE K + I ++ I I + + ++
Sbjct: 171 DIAKSGEMSSLSRERLYSEFVKAMRQPQGDQFIACLHQLDILPFILPTLAQHFNTPQNRQ 230
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF--- 303
+ F +L+S K + + + P+ IR F+ +F + +
Sbjct: 231 RTFTRLALACTLNLPIFSHFAMLLSDLPKDDLSDCLNRLNAPKSIRQFIQTFNHFHDTFI 290
Query: 304 ---NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
N ++ E+ + + D + +L + + ++ ++
Sbjct: 291 ALPNISGNALLELLERTQAHKDSTKLIQLYDACHAYQGSPLSYPKQWLFDAITCHQSISI 350
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
T + K K +G+ L + +
Sbjct: 351 ADIDPT---LTK------KAIGDALSYLR 370
>gi|77359578|ref|YP_339153.1| tRNA nucleotidyl transferase [Pseudoalteromonas haloplanktis
TAC125]
gi|76874489|emb|CAI85710.1| tRNA nucleotidyl transferase [Pseudoalteromonas haloplanktis
TAC125]
Length = 416
Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 57/253 (22%), Positives = 100/253 (39%), Gaps = 21/253 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ +VGGAVRD L+ + D D + M +P + + K
Sbjct: 7 QVYLVGGAVRDLLLKRASNDNDYVVIGETPQTMEAL-----GFVPIGSDFPVY--LHPKT 59
Query: 88 YFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y V + D RRD TIN++ D +ID G
Sbjct: 60 KEEYALGRTERKSGKGYTGFVVDASPDVTLEEDLARRDLTINSMALDANDNIIDPFNGQQ 119
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSDGLVASIKAKKGLKIL 200
DL+++ ++ DA +ED +R+LR RF A + + + L+ +K + L L
Sbjct: 120 DLKDKILRHTTDA---FVEDPVRVLRIARFLARFGSEWRIHPSTYALMQQLKQQGELNHL 176
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
ER+W E K L K+P + G IF +++++ + E
Sbjct: 177 VPERVWLETEKALGEKHPELYFQALQGLG----IFPELEKMVNVPQPKQHHPEGDVFVHT 232
Query: 261 DSLLRFIVLISWQ 273
+LR +++
Sbjct: 233 MLVLRRAADLNFD 245
>gi|99034449|ref|ZP_01314448.1| hypothetical protein Wendoof_01000748 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 252
Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 81/264 (30%), Positives = 121/264 (45%), Gaps = 13/264 (4%)
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
R + FIG+A RI EDYLRILR FRF A ++ + L K ++ LS ERI
Sbjct: 1 RRLNFIGNAEDRIKEDYLRILRAFRFHAKICVGDLSDEILSVCKKHSHMIQNLSGERIRD 60
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267
EI KLLE +P + M + ++I +E+ + LS + K+ LLR
Sbjct: 61 EILKLLECNDPFPTLKSMQESDVLQKIIP--KEVKCEILSSPLLLGTDALVKLALLLRA- 117
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
D+ S+ KF + + F N + LS E KK L+G ++
Sbjct: 118 --TKKNDRLSLGEYVSKFLRLSNKQKKKLLFLLSNDIKTELSEKEQKKYISLFGRELYCD 175
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
+KI N+ + +S + P FPL+GDD++ G PGK +G L
Sbjct: 176 LVKICGVESGENVD--------EYISFANTFNIPKFPLSGDDLISIGHQPGKSLGRNLEL 227
Query: 388 CKQEWINSSFQLSQEDLHHLLRKL 411
KQ W +SS+ L++E+L + L
Sbjct: 228 LKQHWEDSSYTLTKEELVLYAKNL 251
>gi|67900650|ref|XP_680581.1| hypothetical protein AN7312.2 [Aspergillus nidulans FGSC A4]
gi|40742173|gb|EAA61363.1| hypothetical protein AN7312.2 [Aspergillus nidulans FGSC A4]
Length = 1070
Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 66/464 (14%), Positives = 147/464 (31%), Gaps = 85/464 (18%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK---------------------- 65
GG VRD L+ + DID+A + + + +
Sbjct: 52 LRFTGGWVRDKLLGVESHDIDVAINNMTGYQFGTMLKEYLDIPENLDKYKGQNGEKELSL 111
Query: 66 TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ + P + T+ D+ LR + + + + D+LRRD TI
Sbjct: 112 HKIEANPEKSKHLETVTTKIFGFDVDLVNLRKEAYDENSRTPQMEFGTAEEDALRRDATI 171
Query: 125 NALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NAL+ + ++ + G +D+R+ I+ + + +D LR+LR RF + G +
Sbjct: 172 NALFYNLNESKVEDLTGRGLDDMRDEIIRTPMEPYQTFKDDPLRVLRLIRFASRLGFRID 231
Query: 183 DSDGLVASIKAK--KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+S ER+ E+ K+L+ +P A+ + ++ IF + Q+
Sbjct: 232 KDTENAMQHGDIGAALKLKISRERVGIEVQKMLQGPDPRGALHIIDRLNLYPIIFANFQD 291
Query: 241 ----------ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP-- 288
++ + L ++ + L + I++ A ++P
Sbjct: 292 DVTADYSTWSLAYEALHRLCSEDDSGTISRVRSLLVRDPLETYYSWVIVAFAPWSTVPTR 351
Query: 289 --------------------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
++ + N + L ++
Sbjct: 352 VQGTKLIPPRMAETARDSLRADNRTVNILKQTGTHWRNIIDVKTALVEGRMEGTAAEVRQ 411
Query: 323 KVMI--------AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP---------LFPL 365
++ + + + L+L + + ++Q + + +
Sbjct: 412 QLGLHIRSWSTDWRFCVLLSLLQEIMQGGNFVKVVQSYDQFLSYIVEQDLQDVCDLKHIV 471
Query: 366 TGDDVVKYG--IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
GD++++ G V N L + + +E L
Sbjct: 472 KGDEIMEAFETRKKGPWVSNALKLVIEWQLLHPGVEDKEGALKL 515
>gi|107023962|ref|YP_622289.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia cenocepacia AU 1054]
gi|116691049|ref|YP_836672.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Burkholderia cenocepacia HI2424]
gi|123371192|sp|Q1BST9|CCA_BURCA RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|166233844|sp|A0KBA2|CCA_BURCH RecName: Full=Multifunctional CCA protein; Includes: RecName:
Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl-transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT; Includes:
RecName: Full=2'-nucleotidase; Includes: RecName:
Full=2',3'-cyclic phosphodiesterase; Includes: RecName:
Full=Phosphatase
gi|105894151|gb|ABF77316.1| metal dependent phosphohydrolase [Burkholderia cenocepacia AU 1054]
gi|116649138|gb|ABK09779.1| metal dependent phosphohydrolase [Burkholderia cenocepacia HI2424]
Length = 413
Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 66/349 (18%), Positives = 117/349 (33%), Gaps = 31/349 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
VGGA+RD L+ + VQD D + P+++ + K P + +
Sbjct: 3 IYAVGGAIRDELLGVPVQDRDYVVVGATPEQMTAQGFRAVGKDFPVF--------LHPQT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGK------VID 137
+ R++ T Y F D RRD TINA+ + + VID
Sbjct: 55 QEEYALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREVSPEGALVGPVID 114
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
G DLR R + + +ED +RILR RF A + + + + L +
Sbjct: 115 PFDGQADLRARVFRHV---SDAFVEDPVRILRIARFAARFADFTVADETLALMRRMVDAG 171
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
+ L ER+W EI + L P + + G I +V + E
Sbjct: 172 EVDALVPERVWQEIARGLMEAKPSRMFAVLRDCGALARILPEVDALWGVPQRADYHPEVD 231
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315
+ ++ + S+ + + ++ S+ +K
Sbjct: 232 TGVHVMMVVDYAAKQG----YSLAVRFAALTHDLGKGTTPADVLPRHVGHESRSVELLKP 287
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKP 361
L L + +A + NL ++++ +KP
Sbjct: 288 LCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRLFERSDALRKP 336
>gi|148241341|ref|YP_001226498.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
RCC307]
gi|147849651|emb|CAK27145.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp.
RCC307]
Length = 394
Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 56/369 (15%), Positives = 118/369 (31%), Gaps = 33/369 (8%)
Query: 31 IVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD+L+ D+D+ ++ + +K GT ++ R
Sbjct: 43 LVGGAVRDALLQRLGPYPDLDLVVPQGAIKLCQRLAKQ---------HRGTAVVLDR--- 90
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148
+ R L D +D RRD+ INAL
Sbjct: 91 -ERDMARLVLGPWSLDLAAQEGPDLISDLQRRDYGINALALPLTPGEALLDPTGGLGDLA 149
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208
T + + +L D LR+LR R A +++S + L +++ER+ +E
Sbjct: 150 TRQLRALSEANLLADPLRLLRGPRLAAELNF-SLESHTAALIRRHGPALPQVAAERVLAE 208
Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268
+ KL + + G+ + + L +++ LR +
Sbjct: 209 LEKLASCPGGDAGLKQASDLGLLQLWERPLTAGEPGSLEVAGLSDEE--------LRTAM 260
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
++ ++ + + R+++ + ++ + A
Sbjct: 261 PLARLAQRFDGAALGQLKASRKLQQRCGMLRHWLQQLSQPLGEAAMLQLCRELEEDLPAL 320
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVH 387
+ + ++ + P PL G + + G+ PG ++G ++
Sbjct: 321 VLLA--------PKATDGWLQRWRDRSDPLFHPRSPLDGRTLQRELGLAPGPQLGKLMEQ 372
Query: 388 CKQEWINSS 396
E
Sbjct: 373 LMLERAFGR 381
>gi|320584040|gb|EFW98252.1| tRNA nucleotidyltransferase [Pichia angusta DL-1]
Length = 508
Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 74/454 (16%), Positives = 153/454 (33%), Gaps = 74/454 (16%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIF-----SKTRYKVIPTSI------ 75
+ I GG VRD L+ DIDI + + ++ + + + I
Sbjct: 51 ELRITGGWVRDKLLGRESHDIDIGIDHLSGVEFVTQLQEYIKAQNGGQSVDSGIYKIEKN 110
Query: 76 ----SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ T D LRS+ + + + D+ RRD T+N+L+ +
Sbjct: 111 PEKSKHLETCTTKLFGFSIDFVNLRSEKYAEDSRIPEIEVGTAEEDAFRRDATLNSLFYN 170
Query: 131 QQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDG 186
++ G DL + ++ D L+D LR LR RF + Y + +
Sbjct: 171 LTTGKVEDFTGRGLQDLHDGILRTPLDPRKTFLDDPLRCLRLIRFASTYNFRIDELALAA 230
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------- 238
+ +K + +S ERI E K++ KNP+ + + + G ++ +
Sbjct: 231 MREDEIKQKLREKISRERINVEFKKIIMGKNPVYGLRLIDDVGFYQLFECEQPGYEAGNE 290
Query: 239 ------------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ + + LS++++A + SL ++L W+D+K ++
Sbjct: 291 AMKAALKELVQRYGSVEQELNNNETLSRLLDAVYSSDISKQSLFLNLILYPWRDEKIVIG 350
Query: 281 MAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
R ++ L + S E Y+ + + ++L L + Y
Sbjct: 351 KPSVPVPSRVVQDALRMQLKIKHLVGLCCSTLEQYDSTYVQWNNIARSELATKLLIPYRE 410
Query: 340 LTH------------QDTCFILQVLSD------------IIHWKKPLFPLTGDDVV-KYG 374
++ I +++ + + L G +V
Sbjct: 411 EWRLMLLTNIIVSIFRNPQNIHELIDNGAKFVNYVESQNLQDAHNTKLLLNGKEVATALN 470
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
PG + + ++ S++D+ L
Sbjct: 471 RNPGPWLPEVNAKLLTWQLDHP-SGSKQDMEAYL 503
>gi|319778598|ref|YP_004129511.1| tRNA nucleotidyltransferase [Taylorella equigenitalis MCE9]
gi|317108622|gb|ADU91368.1| tRNA nucleotidyltransferase [Taylorella equigenitalis MCE9]
Length = 378
Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 80/376 (21%), Positives = 146/376 (38%), Gaps = 31/376 (8%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
VGGAVRD L+ L ++D D P+ + FS+ P + I
Sbjct: 16 GLDLYCVGGAVRDCLLELPIKDKDWVVVGSTPEDM---FSR---GFKPVGADF--PVFIH 67
Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTINALYADQQGKVIDYVGG 141
+ R++ T Y F D RRDFTINA+ D +G V D GG
Sbjct: 68 PNTGEEYALARTERKTSKGYHGFDFFTGDVTLTEDLKRRDFTINAMAVDSRGLVYDPYGG 127
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKI 199
L D+R+RT + I ED +RILR RF + + + ++ D L ++ +
Sbjct: 128 LTDIRDRTFRHI---SESFSEDPVRILRLGRFLSRFPDFSVHFDTLELCRAMVKDGEVDS 184
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L SER+W E+++ L K P ++ G F+++F ++ ++++ +
Sbjct: 185 LVSERVWKELSRSLVEKAPSRFFTLLHEVGAFEKLFPNM---------RLVQKGDELDIG 235
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
I ++ F++PRE R + + + I + L +
Sbjct: 236 ARLGFDLIHQYLVFSSYFNDFQSQNFAVPREFREYANTLPKIIEKLRYFKIDAVSILNII 295
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPG 378
+ K+ + L + ++ + + ++ + HW + + D+ G+ P
Sbjct: 296 TASDGIRKPEKLLVILEVAHHLNKYSYYDYPRVAFLEHWNELAEQVKKIDLGDLSGLSP- 354
Query: 379 KKVGNILVHCKQEWIN 394
+ I + I
Sbjct: 355 --I-EIKSKAESIRIE 367
>gi|311269186|ref|XP_003132380.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like,
partial [Sus scrofa]
Length = 245
Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/194 (18%), Positives = 82/194 (42%), Gaps = 9/194 (4%)
Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK 276
N +N ++H+ SL++ ++V + + F K +LL + +
Sbjct: 60 NHVNHLIHLMYDLDVAPYIGLPANASLEEFNKVSKNVEGFSPKPMTLLTSLFRVQDD--- 116
Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
+ + + + +E + + + + + + Y D ++ + A
Sbjct: 117 -VTKLDLRLKISKEEKNLGLFIVKN--RKDLIKAKDSSEPLKPYQDFIIDCRESDATARV 173
Query: 337 YNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
L +Q + L ++ W P FP++G D+ K GI GK++G +L +++W S
Sbjct: 174 CELLKYQGEHCL---LKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSG 230
Query: 397 FQLSQEDLHHLLRK 410
+Q+ +++L ++K
Sbjct: 231 YQMEKDELLSYIKK 244
>gi|218508264|ref|ZP_03506142.1| poly(A) polymerase protein [Rhizobium etli Brasil 5]
Length = 108
Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDIIHWKKPLFPLT 366
++L Y G + +LK+ L + + + ++L + WKKP FP+
Sbjct: 2 AFERLLYRNGADGITTRLKLALGVARGKAEGDLSEIARSARLGKLLDRAMTWKKPQFPVN 61
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G DV+ GIP G +VG +L + +W+ +F + L L++
Sbjct: 62 GADVIAAGIPSGPRVGELLGSLENQWVEENFASDRAVLLARLQE 105
>gi|259483336|tpe|CBF78640.1| TPA: tRNA nucleotidyltransferase (AFU_orthologue; AFUA_2G16660)
[Aspergillus nidulans FGSC A4]
Length = 605
Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 66/466 (14%), Positives = 148/466 (31%), Gaps = 85/466 (18%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK---------------------- 65
GG VRD L+ + DID+A + + + +
Sbjct: 132 LRFTGGWVRDKLLGVESHDIDVAINNMTGYQFGTMLKEYLDIPENLDKYKGQNGEKELSL 191
Query: 66 TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ + P + T+ D+ LR + + + + D+LRRD TI
Sbjct: 192 HKIEANPEKSKHLETVTTKIFGFDVDLVNLRKEAYDENSRTPQMEFGTAEEDALRRDATI 251
Query: 125 NALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NAL+ + ++ + G +D+R+ I+ + + +D LR+LR RF + G +
Sbjct: 252 NALFYNLNESKVEDLTGRGLDDMRDEIIRTPMEPYQTFKDDPLRVLRLIRFASRLGFRID 311
Query: 183 DSDGLVASIKAK--KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+S ER+ E+ K+L+ +P A+ + ++ IF + Q+
Sbjct: 312 KDTENAMQHGDIGAALKLKISRERVGIEVQKMLQGPDPRGALHIIDRLNLYPIIFANFQD 371
Query: 241 ----------ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP-- 288
++ + L ++ + L + I++ A ++P
Sbjct: 372 DVTADYSTWSLAYEALHRLCSEDDSGTISRVRSLLVRDPLETYYSWVIVAFAPWSTVPTR 431
Query: 289 --------------------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
++ + N + L ++
Sbjct: 432 VQGTKLIPPRMAETARDSLRADNRTVNILKQTGTHWRNIIDVKTALVEGRMEGTAAEVRQ 491
Query: 323 KVMI--------AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP---------LFPL 365
++ + + + L+L + + ++Q + + +
Sbjct: 492 QLGLHIRSWSTDWRFCVLLSLLQEIMQGGNFVKVVQSYDQFLSYIVEQDLQDVCDLKHIV 551
Query: 366 TGDDVVKYG--IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
GD++++ G V N L + + +E L+
Sbjct: 552 KGDEIMEAFETRKKGPWVSNALKLVIEWQLLHPGVEDKEGALKYLQ 597
>gi|307104940|gb|EFN53191.1| hypothetical protein CHLNCDRAFT_137010 [Chlorella variabilis]
Length = 313
Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 46/200 (23%), Positives = 72/200 (36%), Gaps = 21/200 (10%)
Query: 1 MVSIVQHKWFHDSDL---INILSLLNKGED--KSCIVGGAVRDSLMNLSVQDIDIAT-TI 54
M I + + +L + GG VRD LM + QDIDIA +
Sbjct: 83 MPVIKDSIELTEEEAALFKELLDATKQAGLGTTLRCAGGWVRDKLMGRTSQDIDIALDNL 142
Query: 55 LPDRVM----RIFSKTR--------YKVIPTSISY-GTIKIICRKKYFDITTLRSDLITD 101
L P + T ++ R + D+ LRS+
Sbjct: 143 LGREFADRINEHLKAHGEETRHVAVIMSNPEQSKHLETARMKVRGLWIDLVNLRSEEYAH 202
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHR 159
+ + D+ RRDFTIN+L+ + +I+ DLR I+
Sbjct: 203 HSRIPTMAFGTPEEDAHRRDFTINSLFYNINTGLIEDFTSQGLPDLRAGIIRTPMSPKET 262
Query: 160 ILEDYLRILRFFRFFAHYGE 179
++D LR+LR RF + +G
Sbjct: 263 FMDDPLRVLRAVRFASRFGF 282
>gi|213405453|ref|XP_002173498.1| tRNA nucleotidyltransferase [Schizosaccharomyces japonicus yFS275]
gi|212001545|gb|EEB07205.1| tRNA nucleotidyltransferase [Schizosaccharomyces japonicus yFS275]
Length = 492
Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 72/456 (15%), Positives = 142/456 (31%), Gaps = 74/456 (16%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKT-------------RYKVIPTS 74
I GG VRD L+++ DID+A ++ + R P+
Sbjct: 41 LRIAGGWVRDKLLSIPCHDIDVAVDCMSGFEFAQLVHRYCEQNNIQNSGRVVRIDANPSK 100
Query: 75 ISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ T D LRS T +++ D+LRRD TIN+L+ +
Sbjct: 101 SKHLETATGRLFGIDVDFVGLRSHAYTH--HSEENKFGTPLEDALRRDTTINSLFYNIHT 158
Query: 134 KVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVA 189
+ ++ GL DL + I+ A +D LR +R RF + + +
Sbjct: 159 RSVEDFTEMGLEDLEKKVIQTPLPAMETFSDDALRAVRCIRFASKFQFSIHPETQAGIQN 218
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH---MYNGGIFKEIFLDVQ------- 239
L +S ERI +E+ K+L+ KN A+ ++ DVQ
Sbjct: 219 PAVQHTLLHSISRERIGTEVEKMLKNKNAKLAVDLSYQLHIADAIFGPLPDVQSKLQGTK 278
Query: 240 ---EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
I + + + + V + +L + + W + + ++ +
Sbjct: 279 SATNIDIFSATSLFQQLIVSDPAYKNLSVDDIYMMWLAIAFLPWRYVTLAQGKQYKTLPY 338
Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA------------LHYNNLTHQD 344
+ S+ + Y D + + + A + + +
Sbjct: 339 FLAKESLKLGN-SVANYQDYLYSNTDSITDSVNRAHKAAYELPASFYGVLIRSLDANWKQ 397
Query: 345 TCFILQVLS-------------------------DIIHWKKPLFPLTGDDVVK-YGIPPG 378
Q L + + + L G + I G
Sbjct: 398 AILWAQYLEFLKQPDNKDQVKQKYMGFFNKVQALQLENAYQLKPVLNGKQIASLLKIKAG 457
Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++ ++L + + + S + ++ LI
Sbjct: 458 PQIKDLLSQLIEWQFDHT-NASIAECEQFVKGLITQ 492
>gi|118602242|ref|YP_903457.1| polynucleotide adenylyltransferase region [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567181|gb|ABL01986.1| Polynucleotide adenylyltransferase region [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 362
Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 59/349 (16%), Positives = 122/349 (34%), Gaps = 25/349 (7%)
Query: 28 KSCIVGGAVRDSLMNL--SVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
K +VGGAVRD L+ + + D +++ + + K P +
Sbjct: 2 KVYLVGGAVRDQLLGIADEFTEKDWMVVGSSSKQMLDLGYRQVGKNFPVF--------LH 53
Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVG 140
+ R + Y F + D RRD TINA+ G++ D
Sbjct: 54 PGTQEEYALARLERKIGTGYKGFKFDISSQVTLEQDLFRRDLTINAMAQKA-GELFDPFN 112
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKAKKG 196
G DL N ++ + + ED +RILR RF A + + + L++ +
Sbjct: 113 GQEDLNNGILRHV---SNAFSEDPVRILRIARFAARFKKFGFKVAHQTHQLMSQMVTSGE 169
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
+ L+ ER++ E+NK L + P + G ++++F + S
Sbjct: 170 VDALTPERVFKELNKALSYETPSAFFKVLTACGAYQKVFSSLDNQVHQNHSNSFVFLDNL 229
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
+ ++F + + +++ +I ++ P++ + + + ++
Sbjct: 230 NTD-KAHIKFSIWLKDENRHNIKALCNIIKCPKQYQQLSELVSQFYQFSQDFTNHSSNEV 288
Query: 317 FYLYGD-KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
F + ++ K + L L D I + +
Sbjct: 289 FDFFAKTDILRHKDRFEDLLSTFKLLEIDIVPIEHLRDLLKDINISKLD 337
>gi|319956370|ref|YP_004167633.1| polynucleotide adenylyltransferase region [Nitratifractor
salsuginis DSM 16511]
gi|319418774|gb|ADV45884.1| Polynucleotide adenylyltransferase region [Nitratifractor
salsuginis DSM 16511]
Length = 381
Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 69/410 (16%), Positives = 121/410 (29%), Gaps = 49/410 (11%)
Query: 1 MVSIVQHKWFH------DSDLINILSLLNKG-EDKSCIVGGAVRDSLMNLSVQDIDIATT 53
M ++ + + + L+ + IVGGAVRD L+ V+D+D+
Sbjct: 1 MTTLRAPDFLTPFPHKLQKQIHEVEHFLSTHYSARCRIVGGAVRDRLLGRPVKDVDLEVY 60
Query: 54 I----LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV-- 107
+ M + S+ + + DI R + +
Sbjct: 61 GLELPRFEEAMERLGASG-----VGKSF----FVYKYGDLDIALPRRERKVAEGHRGFAV 111
Query: 108 VFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166
D + + RRDFT+NAL D Q I DY GGL DL + ++ + +ED LR
Sbjct: 112 EPAFDEREATRRRDFTVNALMYDLQEGKILDYWGGLEDLEAKRLRCVDP--ETFVEDSLR 169
Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226
+LR +F A G + + + L + ++ + L A+ M
Sbjct: 170 VLRGMQFAARLGFRIEEGTCRLCRGVDLGDLPGARIFGEFGKMFGGVWLHYGLYALESME 229
Query: 227 NGGIFKEIFLDVQEISLDQLSQVIEAEQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKF 285
LD Q E + L S IL
Sbjct: 230 ISQKLWGQGLDRAAFFAAARKMARYPAQAPEGIRPYCFLAIYAQHSAVPIGKILDA---- 285
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345
+ L K + +
Sbjct: 286 ------VDAPNRYRRALERLPKLPPKVPLSFVADLARKEGVKHSPLAC-----------Y 328
Query: 346 CFILQVLSDIIHWK-KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
+ + + W+ +T +++ G GK +G L +++ I
Sbjct: 329 PQVREAAKRLGVWESAFEIGVTPRELMARGFR-GKALGEELERRRRQKIE 377
>gi|218886522|ref|YP_002435843.1| metal dependent phosphohydrolase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218757476|gb|ACL08375.1| metal dependent phosphohydrolase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 441
Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 50/452 (11%), Positives = 124/452 (27%), Gaps = 58/452 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQD-----IDIATTILPDRV 59
+ + D I I + + + +V ++ + + D IDIA + +
Sbjct: 1 MSQPF---KDAIAICKAILRNGYDAYVV-----NAQLQKELLDGREIEIDIACEPDYEEL 52
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
++F + + + ++ + + T
Sbjct: 53 GKLFPSLE-RSNEDGV---VATMREGGALIRFYHTDTEESSHPEHTLARITPRMLRVLEE 108
Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
+ AL D G D ++ G + +YL ++R RF A++
Sbjct: 109 QGKMPPALACPYIAHTGDVYEGFEDFSKGKVQLRGIPDETLRRNYLLVIRAMRFAANFDL 168
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ + A + L + I E K+ + +++ + + +V
Sbjct: 169 PIEPNSWIAIIRAASRVLDYVRISDIMDEWRKVEAECMW-KFVRLLFDSQVLHGLLPEVA 227
Query: 240 EISLDQLSQVIE--AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK------------- 284
+S + + E E V + +D + + D +M
Sbjct: 228 ALSRVRQQRNDEGTEESVLDHTLDCMHHYPEGEYNYDWLGTFAMLFHDVGKLYTAEYFDG 287
Query: 285 ---------------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
E + + + + F D+
Sbjct: 288 KWNFYQHHRVGAKVTRKLLRRLHFSPEDVEQVCHLVRHHMRFHFMLTDRGIRRFKSL-DE 346
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDII-HWKKPLFPLTGDDVVKY-GIPPGKKV 381
L ++ ++ L + L G++++++ + PG +V
Sbjct: 347 YPRLIEMARADLEARGGSYTYFNHNMKYLERAETPEQMLEPLLNGNEIMEFTNLHPGPQV 406
Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
G + + + E + +R+ A
Sbjct: 407 GMLRDALLKAQVAGEVTSVPEAVD-YVREYKA 437
>gi|289676155|ref|ZP_06497045.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Pseudomonas syringae pv. syringae FF5]
Length = 298
Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 60/266 (22%), Positives = 96/266 (36%), Gaps = 18/266 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLIK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKI 199
DL R ++ + ED LR+LR RF + Y + + LK
Sbjct: 115 DLEARILRHV---SPAFAEDPLRVLRVARFASRYAGYGFTIAPETLGLMRQLSESGELKA 171
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
L++ER W EI++ L + P I +++ G KE+ +V+ + E
Sbjct: 172 LTAERSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEALFGVPQPAAHHPEIDTGVH 231
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKF 285
+ S+L +
Sbjct: 232 VLSVLEQSARHKHPLTVRWACLLHDL 257
>gi|304414238|ref|ZP_07395606.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Candidatus
Regiella insecticola LSR1]
gi|304283452|gb|EFL91848.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Candidatus
Regiella insecticola LSR1]
Length = 462
Score = 84.1 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/222 (20%), Positives = 86/222 (38%), Gaps = 17/222 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD+L+ L V + D ++++ + K P + +
Sbjct: 3 IYLVGGAVRDNLLKLPVTERDWVVVGATANQLLSQGYRQVGKNFPVF--------LHPRS 54
Query: 88 YFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ T + + D RRD TINA+ + + +
Sbjct: 55 QEEYALARTERKTGSGHTGFICHAAPDVTLEEDLRRRDLTINAMAWRDTHNGGELIDPYH 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKAKKGLKI 199
+ + + ED LR+LR RF A + +++ L+ ++ L
Sbjct: 115 GKEDIANRVLRHVSDAFSEDPLRVLRVARFAARFASLGFTIAPETELLMTAMTDNAELST 174
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
L ERIW E K L +++P +++ G +F ++ +
Sbjct: 175 LMPERIWQETEKALLSQSPQIYFQVLHHCGALAVLFPEIDAL 216
>gi|319760209|ref|YP_004124147.1| multifunctional CCA protein [Candidatus Blochmannia vafer str.
BVAF]
gi|318038923|gb|ADV33473.1| multifunctional CCA protein [Candidatus Blochmannia vafer str.
BVAF]
Length = 399
Score = 84.1 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 78/344 (22%), Positives = 126/344 (36%), Gaps = 34/344 (9%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTIL-PDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRDSL+NL + + D T P +++I + K P + +
Sbjct: 4 YLVGGAVRDSLLNLPIIEKDWVITGSNPQEMLKIGYEQVGKDFPVF--------LHPTSH 55
Query: 89 FDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+ R++ Y + + D RRD TINA+ D G ++D G D
Sbjct: 56 EEYALARTERKNGKGYTGFICYTNPSVTIEEDLYRRDLTINAMAYDMHGNLLDPYNGQRD 115
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKGLKILS 201
+ +K + ED LRILR RF F H G + + L++LS
Sbjct: 116 I---KLKLLRHVSDAFYEDPLRILRVARFAAKFKHMGFSIASETLQLMIQMSSSELQLLS 172
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
SERIW+E K L NP + G +F ++ + S+
Sbjct: 173 SERIWTETKKALITNNPQVYFQILKKCGALNILFPEIYTLFTISGSKKWHLNFNNLGSHT 232
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321
+ +D S+ + + + K L I + L
Sbjct: 233 MTKLSNISRLTKDLAIRFSILCC------------NLSEQHNSSKQLIISSVNNLCKRLT 280
Query: 322 DKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKPL 362
I KL +A++YN+L T + I+++ + W P
Sbjct: 281 IPNNILKLSKIVAIYYNDLYDVTTLSSEMIIRIFNKFNCWHCPK 324
>gi|58262928|ref|XP_568874.1| tRNA adenylyltransferase [Cryptococcus neoformans var. neoformans
JEC21]
gi|57223524|gb|AAW41567.1| tRNA adenylyltransferase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 504
Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 71/424 (16%), Positives = 140/424 (33%), Gaps = 42/424 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSK-TRYKVIPTS----------- 74
+ I GG VRD L++L D+DIA +I F + K +PT
Sbjct: 53 ECRIAGGWVRDKLLSLPSSDLDIALSIPSGHSFAVAFVDFLKAKDVPTGSVGKVVANPEQ 112
Query: 75 -ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
T D LRS+ D R +V ++ D+ RRD TINAL+ +
Sbjct: 113 SKHLETGTTRIMGLECDFVGLRSETYADSRIPQVKPGTPFE-DASRRDLTINALFYNVHT 171
Query: 134 KVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ ++ GL+DL NR + +D LRI+R RF + +
Sbjct: 172 RQVEDYTKMGLSDLENRIARTPLPPRQTFQDDPLRIVRCVRFASRFNLAIAQEVVDSIKQ 231
Query: 192 KAKKGLKILSSERIWSEINKLLE-AKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQLSQ- 248
+ K + + I + NP +A+ +++ + IF +V + +
Sbjct: 232 EDVKVGILSKVSKERIGIETIKMLHNNPFHALSLIHSLDLHPYIFSCEVDPPRQEAFAAA 291
Query: 249 --VIEAEQVFEWKIDSLLRFIVLI---------SWQDKKSILSMAKKFSLPREIRYFLIS 297
+ E + L S + + + + ++
Sbjct: 292 QILNEVAKRKSVDEVLWLATAATPFRGLTVKRKGRDVPASSVVIGEGLKTSVTNLFDAVN 351
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
N + +++ ++ ++ + + + + I Q
Sbjct: 352 IINLDATRRSDIGISLQHQAVRPWERSLTFAAILAILPVWKGEWDDGAEGIYQQYEAFEG 411
Query: 358 WKK----PL-----FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+ P L G+D+ + IPP + I +++ ++E+
Sbjct: 412 KIRDLGLPEDIDRPLLLNGNDIQQLLSIPPSSLITTIRQSLNAFQLDNPLA-TKEECEKW 470
Query: 408 LRKL 411
L+ +
Sbjct: 471 LKSM 474
>gi|223040792|ref|ZP_03611059.1| polyA polymerase family protein [Campylobacter rectus RM3267]
gi|222877982|gb|EEF13096.1| polyA polymerase family protein [Campylobacter rectus RM3267]
Length = 376
Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 63/400 (15%), Positives = 131/400 (32%), Gaps = 33/400 (8%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVM 60
+S + K + +L + L ++ IVGG VRD+++ D D+ P +
Sbjct: 1 MSKIGSKICKNKNLKWLRDFLAPHTKRAYIVGGCVRDAMLGKKTSDFDVEIYGIDPAKFD 60
Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--FTRDWKADSL 118
+ ++ +Y + + K FD++ R++ T + + D +A SL
Sbjct: 61 ALMAQ--IGACGVGKNY----FVYKFKNFDLSLPRTENKTGEGHKAFEVAYADDERAASL 114
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RRDFT+NA+ + G R I + + ED LR+LR +F A
Sbjct: 115 RRDFTVNAMMINIFDGSFLDFYGGERDLKRGIL-LHIDDEKFAEDSLRVLRAVQFSARLN 173
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ + + L ++ + G + K L++
Sbjct: 174 FRIARDSLRLMKRLSISDLSRERVNGELMKLFGAKFQEVGFL--YLYKLGLLGKIFGLNL 231
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ + +++ F K + + + + LP+
Sbjct: 232 SSAEAKKFAAKLKSAVKFLPKQNGKKDEREFLYLLNGYFGVKNFYDLGLPK--------- 282
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
S K + LKI L N ++ +++ ++ +
Sbjct: 283 ----------SFEACVKEPFFESHPSDKDLLKIALDKPLKNWLGLNSPSLIKRAKNLGVY 332
Query: 359 K-KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397
+ K + +++K G G +G + + I
Sbjct: 333 EAKFEPAIDTAEILKQGFK-GAAIGAEIRRRQDLAIKERL 371
>gi|321251913|ref|XP_003192221.1| tRNA adenylyltransferase [Cryptococcus gattii WM276]
gi|317458689|gb|ADV20434.1| tRNA adenylyltransferase, putative [Cryptococcus gattii WM276]
Length = 504
Score = 83.7 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 65/421 (15%), Positives = 131/421 (31%), Gaps = 42/421 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTIL-----PDRVMRIFSKTRYKVIPTSI------- 75
+ I GG VRD L++L D+DIA +I +
Sbjct: 53 ECRIAGGWVRDKLLSLPSSDLDIALSIPSGHSFAVAFVDFLKAKNVPTGSVGKVVANPEQ 112
Query: 76 -SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ T D LRS+ D R +V ++ D+ RRD TINAL+ +
Sbjct: 113 SKHLETGTTRIMGLECDFVGLRSETYADSRIPQVKPGTPFE-DASRRDLTINALFYNVHT 171
Query: 134 KVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ ++ GL+DL NR + +D LRI+R RF + +
Sbjct: 172 RQVEDYTKMGLSDLENRIARTPLPPRQTFQDDPLRIVRCVRFASRFNLTIAQEVTESIKQ 231
Query: 192 KAKKGL--KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ K +S ERI E K+L + ++ + +
Sbjct: 232 EDVKAGILSKVSKERIGIETTKMLHNNPFHALSLIHSLDLYPYMFSCEIDPPRQEAFAAA 291
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK------------FSLPREIRYFLIS 297
QV + K + ++ + + + + + ++
Sbjct: 292 QILNQVAKRKSVDEVLWLATAAVPFRGLTVKRKGRDVPASSVVISEGLKTSVTNLFDAVN 351
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
+ + +++ ++ ++ + + + + I Q
Sbjct: 352 IISLDATRRSEIGMSLQHPAVRPWERSLTFAAILAILPVWKGEWDDGAECIYQQYEAFAE 411
Query: 358 WKK---------PLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+ L G+D+ + IPP + I +++ ++E+
Sbjct: 412 RVRDLGLPEAIDKPLLLNGNDIQQLLSIPPSSLITTIRQSLNAFQLDNPLA-TKEECEKW 470
Query: 408 L 408
L
Sbjct: 471 L 471
>gi|45201214|ref|NP_986784.1| AGR118Wp [Ashbya gossypii ATCC 10895]
gi|44986068|gb|AAS54608.1| AGR118Wp [Ashbya gossypii ATCC 10895]
Length = 533
Score = 83.7 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 67/463 (14%), Positives = 141/463 (30%), Gaps = 76/463 (16%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVM----RIFSKTRYKVIPT 73
+ L + I GG VRD L+ L +D+DI + +R
Sbjct: 67 CAQLGDAGLRPRIAGGWVRDKLLGLESEDLDIVLNNVTGERFASGLVEFLKAQGGSARGV 126
Query: 74 SI--------SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ T D LRS+ + V D++RRD T+
Sbjct: 127 HKIQRNPARSKHLETCTTTVLGVAVDFVNLRSETYAEESRVPTVEFGTPLQDAMRRDATL 186
Query: 125 NALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
NAL+ + V++ G DL ++ A L+D LR+LR RF A +G +
Sbjct: 187 NALFYNILEGVVEDFTGRGLADLAAGVLRTPMPARQTFLDDPLRVLRLVRFAARFGFELD 246
Query: 183 DSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMY-------------- 226
+ + + ++ +S ER+ +E++K+L + +PL + +
Sbjct: 247 NEAREGMAYRDIHAALVRKISRERVGTELHKMLTSADPLYGLRLLCEAGLLPAVFLSPDG 306
Query: 227 ------NGGIFKEIFLDVQEISLDQLS-------------------------------QV 249
+ + ++ L L
Sbjct: 307 LPRGAEQHVLGMDYQVEALCAHLSALKERCPGFAAALEDEAFRERFLLSTVLARFRGVHA 366
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
++ + S++R + + ++ + E+ S+ +
Sbjct: 367 TSTKKQPVEAVVSIVREGLKLGRATVSAVQMAVRSIDDYHEMVENYGSWSRARVGLQLRG 426
Query: 310 IPEIKKLFYL--YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
+ + + + + +A + + + L D + + G
Sbjct: 427 LEDHWRQCHYTAMACQYFLAANEDARLALIGLYGRFEQHVREEGLEDAHKLR---PMIDG 483
Query: 368 DDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ +VK G G + + + + + E L L+
Sbjct: 484 NQLVKLLGTKGGPWMSRAMSMMVEWQLEHP-HGTSEQLADWLQ 525
>gi|134108198|ref|XP_777050.1| hypothetical protein CNBB2820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259735|gb|EAL22403.1| hypothetical protein CNBB2820 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 504
Score = 83.7 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 71/424 (16%), Positives = 139/424 (32%), Gaps = 42/424 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSK-TRYKVIPTS----------- 74
+ I GG VRD L++L D+DIA +I F + K +PT
Sbjct: 53 ECRIAGGWVRDKLLSLPSSDLDIALSIPSGHSFAVAFVDFLKAKDVPTGSVGKVVANPEQ 112
Query: 75 -ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
T D LRS+ D R +V ++ D+ RRD TINAL+ +
Sbjct: 113 SKHLETGTTRIMGLECDFVGLRSETYADSRIPQVKPGTPFE-DASRRDLTINALFYNVHT 171
Query: 134 KVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ ++ GL+DL NR + +D LRI+R RF + +
Sbjct: 172 RQVEDYTKMGLSDLENRIARTPLPPRQTFQDDPLRIVRCVRFASRFNLAIAQEVVDSIKQ 231
Query: 192 KAKKGLKILSSERIWSEINKLLE-AKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQLSQ- 248
+ K + + I + NP +A+ +++ + IF +V + +
Sbjct: 232 EDVKVGILSKVSKERIGIETIKMLHNNPFHALSLIHSLDLHPYIFSCEVDPPRQEAFAAA 291
Query: 249 --VIEAEQVFEWKIDSLLRFIVLI---------SWQDKKSILSMAKKFSLPREIRYFLIS 297
+ E + L S + + + + +
Sbjct: 292 QILNEVAKRKSVDEVLWLATAATPFRGLTVKRKGRDVPASSVVIGEGLKTSVTNLFDAVD 351
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
N + +++ ++ ++ + + + + I Q
Sbjct: 352 IINLDATRRSDIGISLQHQAVRPWERSLTFAAILAILPVWKGEWDDGAEGIYQQYEAFEG 411
Query: 358 WKK----PL-----FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407
+ P L G+D+ + IPP + I +++ ++E+
Sbjct: 412 KIRDLGLPEDIDRPLLLNGNDIQQLLSIPPSSLITTIRQSLNAFQLDNPLA-TKEECEKW 470
Query: 408 LRKL 411
L+ +
Sbjct: 471 LKSM 474
>gi|319940764|ref|ZP_08015104.1| CCA-adding enzyme [Sutterella wadsworthensis 3_1_45B]
gi|319805784|gb|EFW02560.1| CCA-adding enzyme [Sutterella wadsworthensis 3_1_45B]
Length = 381
Score = 83.7 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 98/253 (38%), Gaps = 25/253 (9%)
Query: 28 KSCIVGGAVRDSLM-----NLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIK 81
K VGG VRD L+ L D D P+ +++ +P +
Sbjct: 2 KIFPVGGYVRDMLLRKRGFKLPEGDRDWVVIGETPEAMIKR------GYLPVGGDF--PV 53
Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVID 137
+ + + + R++ T Y +F + D RRD TINA+ G +ID
Sbjct: 54 FLHPRSHEEYALARTERKTAPGYHGFIFHASPDVTLEEDLARRDLTINAMALAPDGFIID 113
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-- 195
GG +DL ++ + ED +RILR RF A +I + + +
Sbjct: 114 PFGGQHDLAAGILRHV---SPAFAEDPVRILRIARFAARLPSFSIAPETMALMRRMVDSG 170
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255
L ER+ +E K L P + + G + ++ +++ + QL + ++
Sbjct: 171 EADALVPERVLAEFTKGLRTATPCRMLDILTECGFCQRLYPELRLSA--QLRGRLHRARL 228
Query: 256 FEWKIDSLLRFIV 268
+ +D LL +
Sbjct: 229 ANFPVDLLLAVLA 241
>gi|221140976|ref|ZP_03565469.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
str. JKD6009]
Length = 320
Score = 83.7 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 56/335 (16%), Positives = 120/335 (35%), Gaps = 28/335 (8%)
Query: 91 ITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148
+TT R D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR
Sbjct: 1 MTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNR 60
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-----KILSSE 203
I+ +G A R ED LR++R RF + I+ +I+
Sbjct: 61 IIRTVGIAEERFQEDALRMIRCLRFQSQLSFDIATETFEAMRIQMADIKFLSIERIVIEL 120
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----VQEISLDQLSQVIEAEQVFEWK 259
+ ++ N L ++ F+ + ++ + I L+ L ++ + +
Sbjct: 121 TKLMRGINVEKSFNHLKSLKAFNYMPYFEHLDMNQINVTEAIDLELLIAIVSVKFDINYS 180
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+ L + ++ + A + +E + ++ + + + ++ K +
Sbjct: 181 LKPLKLSNRQVKDINQYIQIMNALPSIITKEQLKMFVYDYDTHLIKNVMVAADVLKANDI 240
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPG 378
G + +I L I + L + + + G ++ G
Sbjct: 241 QGHEPLIVNL----------------QTIDETLHRLPMHNRKDMMVNGGVLMAHLNAKSG 284
Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ ++L + + + ++ + +
Sbjct: 285 PWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 319
>gi|77553768|gb|ABA96564.1| tRNA-nucleotidyltransferase, putative, expressed [Oryza sativa
Japonica Group]
Length = 600
Score = 83.7 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 72/410 (17%), Positives = 132/410 (32%), Gaps = 49/410 (11%)
Query: 16 INILSLLNKGED--KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIF--------- 63
+L ++ + + GG VRD L+ DIDIA +
Sbjct: 98 RRLLDVVRHFGLGTQLRVAGGWVRDKLLGKDSTDIDIALDNMTGQNFCEKVNEYSELLGE 157
Query: 64 SKTRYKVIPTS----ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ VI + T +++ + D LRS+ + V K D+ R
Sbjct: 158 EQKGIGVIQCNPDQSKHLETARMLIFDIWIDFVNLRSEKYAENSRIPTVEIGTAKEDAFR 217
Query: 120 RDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TIN+L+ + ++ G+ DL+ I A L+D LR+LR RF A +
Sbjct: 218 RDLTINSLFFNINTNTVEDLTGRGIEDLKKGLIVTPLPAKATFLDDPLRVLRAIRFAARF 277
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNA---IVHMYNGGIFK 232
+ AS + K +S ERI E++ ++ K+P+NA I + +
Sbjct: 278 NFTLTEDLKDAASDEKVKSELGSKISKERIGHEVDLMMSDKHPVNAMCYIRDLGLFYVVF 337
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
D+ ++ + W + + V D KS +
Sbjct: 338 AFPEKPDPPVPDKCDRLCVSHIEVAWNLAHSIGCSVFSGGSDSKSQDEHRRLCFYSALFT 397
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
+ + ++K I + + + A + ++ +L
Sbjct: 398 PVRNTIYLDKKSKKIPVTNYIIRDSLKLKASDADTVVNVHAA-------SEKFAELINLL 450
Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKV----------GNILVHCKQEW 392
+ L + + ++ G IL K W
Sbjct: 451 ESNENLTTVKEKLDDEYL---------EIPTDSVKRVLAGLILREIKDFW 491
Score = 36.3 bits (82), Expect = 8.0, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWI 393
LH + ++ L WK L G ++ + G +G + +
Sbjct: 518 LHQRKEKYTRAERLITELELDGVWKM-KPLLDGKAIMGIMQVKGGPLIGKWQQRLLKWQL 576
Query: 394 NSSFQLSQEDLHHLLR 409
++E + + +
Sbjct: 577 AYPRGTTEECIEWMKQ 592
>gi|158520990|ref|YP_001528860.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfococcus oleovorans Hxd3]
gi|158509816|gb|ABW66783.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfococcus oleovorans Hxd3]
Length = 474
Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats.
Identities = 89/452 (19%), Positives = 144/452 (31%), Gaps = 92/452 (20%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGA+RD L +D+DI P+ V R +K R G + + KK
Sbjct: 23 KLYVVGGALRDHLAGRLPRDVDIICDEAPN-VARCIAKARLS--------GAVVVKLEKK 73
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTINALYAD-----QQGKVIDYV 139
R + + V T +AD RDFT+NA+ A + G++ID +
Sbjct: 74 PHP-PCFRVVDKNNPAESIDVVTLHPDGIRADLEARDFTVNAMAAALLPGGRIGEIIDPL 132
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199
GG+ D++NR ++ D +RILR RF A I + L A L
Sbjct: 133 GGMADMQNRLLRACSGTA--FAADPVRILRAARFAATLDF-TIFPETLDRMAAAVGLLTR 189
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------SLDQLSQVIEAE 253
+ ERI +E+ +LL + L I + + G +F ++ + L
Sbjct: 190 SAFERITAELFELLACPDALPHIQMLDDIGALDVLFPEIAAMKGCAQNGFHHLDVWGHTL 249
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSM-------------------------------- 281
+ E L R VL + SM
Sbjct: 250 ETLEHCERLLRRPDVLFTKNAAAFCRSMAGKNRLPVIKLATLLHDAGKPGCKIFDETKNR 309
Query: 282 -----------------AKKFSLPREIRYFLISFFNCNFNQ--------KTLSIPEIKKL 316
A + L FL C+ K +I +
Sbjct: 310 QVFYGHDREGETIAGNIAHRMKLSNSDTAFLQLLVRCHMRPMALSRPGVKPATITRWFET 369
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----WKKPLF----PLTGD 368
G +++ A + + Q +P+ L+G
Sbjct: 370 VADNGLALLLLAAADICAKSGSRADPMEKERFCQWADQTAADYCLRIRPVLGQTDLLSGA 429
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400
D+ G+ PG +G +L +Q +
Sbjct: 430 DLQDMGMAPGPDMGRVLRKVRQHQNDGRVTDK 461
>gi|241667788|ref|ZP_04755366.1| tRNA CCA-pyrophosphorylase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876332|ref|ZP_05249042.1| tRNA nucleotidyl transferase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842353|gb|EET20767.1| tRNA nucleotidyl transferase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 368
Score = 83.3 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 46/271 (16%), Positives = 97/271 (35%), Gaps = 19/271 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPD-RVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ ++ +D D + ++++ P + +
Sbjct: 2 EFYLVGGAVRDILLGIAPKDRDWVVVGATETQMIKAGFTKILSSFPVF--------LHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ RS+ G + D RRD TIN++ D+ +ID G
Sbjct: 54 TKEEYALARSEKKIAKGYHGFEVNFSSNITLEEDLKRRDLTINSMAIDKNNNIIDPFNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
ND++NR ++ +ED LR++R RF N +I +
Sbjct: 114 NDIKNRILRHT---SEAFIEDPLRVVRLARFKVQLSAFNFSIADETINIIKSIIKSGELN 170
Query: 203 ERIWSEINK--LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
++ + +NP + + IF +++ SL+ + +
Sbjct: 171 YLTKERLHIEFIKALRNPKIFFETLDEFDSLRIIFPSIKK-SLNAIPNKNFFRKKTYLNS 229
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREI 291
+ + + + + +I ++ + L +
Sbjct: 230 SNEEKICLCLLNLEDDTINNLKLELLLTNKQ 260
>gi|167627235|ref|YP_001677735.1| tRNA CCA-pyrophosphorylase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167597236|gb|ABZ87234.1| tRNA nucleotidyl transferase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 368
Score = 83.3 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 46/271 (16%), Positives = 95/271 (35%), Gaps = 19/271 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPD-RVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ ++ +D D + ++++ P + +
Sbjct: 2 EFYLVGGAVRDILLGIAPKDRDWVVVGATETQMIKAGFTKILSSFPVF--------LHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ RS+ G + D RRD TIN++ D+ +ID G
Sbjct: 54 TKEEYALARSEKKIAKGYHGFEVNFSSNITLEEDLKRRDLTINSMAIDKNNNIIDPFNGQ 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
ND++NR ++ +ED LR++R RF N +I +
Sbjct: 114 NDIKNRILRHT---SEAFIEDPLRVVRLARFKVQLSAFNFSIADETINIIKSIIKSGELN 170
Query: 203 ERIWSEINK--LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
++ + +NP + + IF +++ SL+ +
Sbjct: 171 YLTKERLHIEFIKALRNPKIFFETLDEFDSLRIIFPSIKK-SLNAIPNNNFFRNKTYLNS 229
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREI 291
+ + + + +I ++ + L +
Sbjct: 230 SNEEKICLCLLNLGDDTINNLKLELLLTNKQ 260
>gi|332184720|gb|AEE26974.1| tRNA nucleotidyltransferase [Francisella cf. novicida 3523]
Length = 368
Score = 83.3 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 58/343 (16%), Positives = 106/343 (30%), Gaps = 33/343 (9%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
+VGGAVRD L+ ++ +D D + + + K+ I +
Sbjct: 4 YLVGGAVRDMLLGITPKDKDWVVVGATED--EMLANGFIKIPANF-----PVFIHPQTKQ 56
Query: 90 DITTLR----SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ R + G + D RRD TIN++ DQ KVID G DL
Sbjct: 57 EYALARSEKKTANGYHGFEVNFSKNISLEEDLKRRDLTINSIAIDQNNKVIDPFNGQADL 116
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+NR ++ +ED LR++R RF A N ++ + +
Sbjct: 117 QNRILRHT---SIAFIEDPLRVVRLARFKAQLSNFNFSIAQETHTLVKELVKSGELNHLT 173
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265
++ I I ++ I+LD+L + + +
Sbjct: 174 RER----------------LHIEFIKALINPNIFFITLDELEALKPIFPNINRVLSLVPD 217
Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEIKKLFYLYGDKV 324
+ + S + L + + L K + + +
Sbjct: 218 RSFFENSIYQNSSVDEKITLCLLKVPQGQLDHLRKELLLTNKQYKLLKASMTISKILEDK 277
Query: 325 MIAKLKIFLALHYNNLTHQD--TCFILQVLSDIIHWKKPLFPL 365
I +IF + N+ L + + + PL
Sbjct: 278 TITAEEIFQLIKSANILRDKNLYENSLNIYKKYLSIRSFKTPL 320
>gi|326536797|ref|YP_004301229.1| putative tRNA nucleotidyltransferase [Aeromonas phage 65]
gi|312263143|gb|ADQ53399.1| putative tRNA nucleotidyltransferase [Aeromonas phage 65]
Length = 348
Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 65/370 (17%), Positives = 122/370 (32%), Gaps = 49/370 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K+ +VGGAVRD ++ +D+D + K Y+ + + +
Sbjct: 2 KTYLVGGAVRDKILGRECKDMDWVIVG---ETVENMDKKGYQR--VGEHFPVYLLPNGDE 56
Query: 88 YFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146
T R + + T + D RRDFTINA+ D + G
Sbjct: 57 LAMARTERSTGDGYNDFVVDFNPTVTIQEDLYRRDFTINAIAYDDETGSYIDPYGGICDI 116
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSERI 205
+ + + +D LR+ R RF YG + ID+ + S+ LK L ER+
Sbjct: 117 VSKKIRMVNPNA-FRDDPLRVFRAIRFACRYGFEIEIDTHNAIVSMVKDGKLKNLPRERM 175
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265
+ E+ K+ E M F ++E + D L+
Sbjct: 176 FLELTKIHEDG-------KMNEFYGFIRDNDIMEEFGFSEF--------TLGCDYDVSLQ 220
Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
+ + +K + K + +P E + F ++ L+ +
Sbjct: 221 YFLCTLQATRKDFEDLDKIYKIPNEFKVFADVWYFDGPEPAILTKC-------RAEQEPN 273
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385
L I L L ++ +T D + GK++G+++
Sbjct: 274 TPMLDIALDLGMVDVEQVKAYR----------------SVTAKDFPEL---TGKELGDMI 314
Query: 386 VHCKQEWINS 395
+++ +
Sbjct: 315 RQEREKQVLG 324
>gi|299116100|emb|CBN74516.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 707
Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 54/236 (22%), Positives = 94/236 (39%), Gaps = 24/236 (10%)
Query: 13 SDLINILSLL------NKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-----ILPDRVMR 61
+ +IL++L +K + GG VRD L+ L +DIDIA + V
Sbjct: 56 PNEADILAMLLEAVKYSKTGTVVRVAGGWVRDKLLGLENEDIDIALDNCTGVAFAETVNA 115
Query: 62 IFSKTR--------YKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD 112
+ P + T ++ R + D+ LR+++
Sbjct: 116 YLKSQGRDEGKVAVIEANPEQSKHLETARMKIRGVWVDLVNLRTEVYRSDSRIPEASLGT 175
Query: 113 WKADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRF 170
+ D+LRRDFT+NAL+ + ++ G +DLR+ I+ +D LR+LR
Sbjct: 176 AEEDALRRDFTLNALFYNVNEGKVEDKTGRGVDDLRDGIIRTPLSPMITFRDDPLRVLRA 235
Query: 171 FRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVH 224
RF A +G + A + +S ER+ +E+ ++ K A+
Sbjct: 236 VRFAARFGFALHEDLRAAARDSEIQAALGTKVSRERVGTELCGMITGKMAQPALAL 291
>gi|4914379|gb|AAD32915.1| putative poly(A) polymerase [Arabidopsis thaliana]
Length = 241
Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 30/192 (15%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
S + ++ + +VGG VRD ++N +D D+ TT ++ R+F + +
Sbjct: 5 SSIRQVIDEDINSGFDAYLVGGCVRDLILNRVPKDYDVITTADLKQIRRLFHRAQV---- 60
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--------------------------RYAK 106
+ + ++++ + +D
Sbjct: 61 IGKRFPICHVWMGGSIIEVSSFDTVAHSDSDLEKSKEKSGVSLDTKANKNNSLFKMYSGW 120
Query: 107 VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166
+ +SL+RDFTIN+L+ + I + + + R
Sbjct: 121 DIKDCKRWRNSLQRDFTINSLFYNPFDFTIYDYANGMEDLTDLKFKVLTILSWFSPNTAR 180
Query: 167 ILRFFRFFAHYG 178
ILR R A G
Sbjct: 181 ILRGLRIAARLG 192
>gi|67478802|ref|XP_654783.1| tRNA nucleotidyltransferase [Entamoeba histolytica HM-1:IMSS]
gi|56471858|gb|EAL49397.1| tRNA nucleotidyltransferase, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 484
Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 70/447 (15%), Positives = 133/447 (29%), Gaps = 66/447 (14%)
Query: 16 INILSLLNKGED------KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFS---- 64
INI +LN + +VGG VRD ++ + DIDI + + + +
Sbjct: 19 INIFKVLNNTKQYFNLSCTVRVVGGWVRDKILKKNSHDIDITSEGISGVQFAQYVTQYLQ 78
Query: 65 ----KTRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
T+ + T + D + R++ D + D +R
Sbjct: 79 LQGINTKLLTNREQTEHLQTATTTICELPIDFGSPRAEEYKDNSRIPEIRKGSIYEDCIR 138
Query: 120 RDFTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDFTIN L+ + +I+ G DL N+ I+ D +D LR+ R RF A YG
Sbjct: 139 RDFTINCLFYRIEDGMIEDYTNGYEDLVNKIIRTPIDPIQSFTDDPLRVFRGIRFSAKYG 198
Query: 179 EKNIDSDGLVASIKAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG-------- 229
K D+ + +G+ + R E+N +L + +P
Sbjct: 199 FKIEDNTLNAMTNPTVLRGMNKIKKSRRTPELNNILISSHPSYGFHVFQYCHLLKEILIT 258
Query: 230 ----IFKEIFLDVQEISL------------------DQLSQVIEAEQVFEWKIDSLLRFI 267
+ + + L D L ++ + +K D+ L
Sbjct: 259 EESNECNWEMVQLNSVPLMYCCEEVFNSINQVKDDTDMLKHLLLTALCYSFKNDTFLLKK 318
Query: 268 VLISWQDKKSILSMAK---------------KFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ I + + + + K +
Sbjct: 319 KELPMIPNIIIEGLKFTSKEREKVDNIIEGVNLLNQHNCKCERLYYGRSMLKSKEMWKAS 378
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS--DIIHWKKPLFPLTGDDV 370
I L + + I + Q ++ + + + G +
Sbjct: 379 IILYCCLNSHFTIPSYPNINFKIQIEPNLLQTVQHHFDLIYQLQLDNIWLITPAINGSQI 438
Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSS 396
+ GK V + + I++
Sbjct: 439 TQLYQTKKGKWVSTAINSLIEYQISNP 465
>gi|194476947|ref|YP_002049126.1| tRNA nucleotidyltransferase/poly(A) polymerase [Paulinella
chromatophora]
gi|171191954|gb|ACB42916.1| tRNA nucleotidyltransferase/poly(A) polymerase [Paulinella
chromatophora]
Length = 410
Score = 83.0 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 66/401 (16%), Positives = 142/401 (35%), Gaps = 50/401 (12%)
Query: 31 IVGGAVRDSLMNL-------SVQDIDIA----------TTILPDRVMRIFSKTRYKVIPT 73
+VGG VRD L++ ++D+D++ + L + + + +
Sbjct: 20 LVGGVVRDWLLHRMHRDPWNGLRDLDLSIETQTVSKFNVSCLAQELSNYYYRE-VTLCQY 78
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-- 131
YG++++ D+TT R + + +V ++D RRD ++NA+
Sbjct: 79 YEQYGSVEMNISGISIDLTTARQEYYPSPGFNPIVDFNTLESDLARRDLSLNAMALVFEK 138
Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK---------N 181
+++D GG +DL ++F+ + +D R++R R+ A +G
Sbjct: 139 GHWELLDLHGGQSDLAMGWLEFLS--ETSVADDPTRLVRAARYGAKFGMILGPNSFKQAT 196
Query: 182 IDSDGLVASIKAKKGLKILSS---ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ S + + R+ E+ LLE K +A+ + G K + L++
Sbjct: 197 TTTALWPWSWRLGDPFEKAPPSLSTRLRMELESLLECKGWDSALQLLQKWGALKLLDLNL 256
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ +L V + L I + + +E F
Sbjct: 257 LSNNNWRLRIVWG--ERLGLPPLLALITIANNPIDLACRLQIPKNQIHWLKEFIEFHQFL 314
Query: 299 F----NCNFNQKTLSIPEIKKLFYLY-GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353
+F++ +S + G + + L +L
Sbjct: 315 IGIRTKNSFSKIPISQWPPSRWCRELEGRGWAPETIVLGLISGIQPRKP--------LLR 366
Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
+ W+ P+T ++++ G+ G +GN L + W++
Sbjct: 367 WYLRWRHINSPITAGELIQKGVTIGPDLGNYLRLLRWNWVD 407
>gi|283957229|ref|ZP_06374690.1| putative multifunctional Cca protein [Campylobacter jejuni subsp.
jejuni 1336]
gi|283791241|gb|EFC30049.1| putative multifunctional Cca protein [Campylobacter jejuni subsp.
jejuni 1336]
Length = 359
Score = 83.0 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 63/402 (15%), Positives = 128/402 (31%), Gaps = 48/402 (11%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTS 74
I L ++ +VGG+VRD + L + D DI I P +I K + +
Sbjct: 2 QFIAEFLKPYTKRAYLVGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKLGAQGL--G 59
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYAD-Q 131
S+ + + K +D+ R++ + D K + RRDFTIN++ +
Sbjct: 60 KSF----FVHKFKNYDLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLF 115
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ +D+ GGL DL ++ ED LR+LR F + + K +
Sbjct: 116 NDEFLDFYGGLKDLGTGFLR--HIDKQSFQEDSLRVLRAVVFASRFNFKITSESLKLMQS 173
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L + K + + + + + ++
Sbjct: 174 MDITDLSKDRINAELYKFFKSPRLDVGYRYLQELDLEKQIFGFESVFKSL---EFQNLLR 230
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ F L + +K +++ + + N F +S
Sbjct: 231 QSREFVKSDALFLYLYLNFFNLEKDIFFKRT-------KLKKEYLKYANQAFYLDDISDF 283
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371
E+ K+ + K + + + L++ + K + D +
Sbjct: 284 ELAKIAFEMPLKEWLGLW---------SKKRIEQAKRLRLYEN-----KFESKILAKDFI 329
Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
G GK +G + ++ +L ++ L
Sbjct: 330 NAGF-CGKILGLKIQEARE-----------NELKEYIKGLAK 359
>gi|50549773|ref|XP_502358.1| YALI0D03267p [Yarrowia lipolytica]
gi|49648226|emb|CAG80546.1| YALI0D03267p [Yarrowia lipolytica]
Length = 495
Score = 83.0 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 74/456 (16%), Positives = 143/456 (31%), Gaps = 75/456 (16%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIF----------------SKTRYKVI 71
GG VRD L+ + DIDIA + + SK K+
Sbjct: 36 LRFTGGWVRDKLLGQNSNDIDIAINSLTGAEFVDQLHAWISANPGSYPDELRSKHTIKLN 95
Query: 72 PTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
P + T D LRS+ +D VV + D+ RRD T+NAL+ +
Sbjct: 96 PDKSKHLETATTNLFGLDVDFVNLRSEEYSDESRVPVVQFGTAEQDAYRRDATLNALFYN 155
Query: 131 QQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK---NIDSD 185
Q K ++ + G DL ++ +D LR+LR RF A + +
Sbjct: 156 LQEKKVEDLTGRGLADLEEGILRTPLAPKQTFKDDPLRVLRLIRFAARFNFQLAPEAIEA 215
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--- 242
+ +S ER+ E++K+ P + + G+ EIF + +
Sbjct: 216 IVSGEDIKHALETKISRERVGIELDKMFSGPCPEYGLRLIAKLGLEHEIFGLPDKYATKD 275
Query: 243 ----LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR-----Y 293
+ LS+ ++ + + + + S + KK I ++ + +
Sbjct: 276 TTKPIFHLSRAVDTWEAIRSSENLHINLLTAYSGETKKMIWALCALYPWDKITAVTEKNK 335
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK------------------------- 328
++ F S + + I +
Sbjct: 336 PCLALFMIIREGIKWSTHDGDVITAAINTVDAIEEAVEGVNGGNKPSRADLALLVRKCGE 395
Query: 329 ---LKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDVVK-YG 374
+ A ++ D L+ S + W + G +++
Sbjct: 396 HWTANVLFAAQKTIVSGADMESTLKRYSALVDAIVDQKVDDSWSV-KPLVNGKEIMATLQ 454
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
PGK + +L + ++ L +++ +
Sbjct: 455 AKPGKWLATLLNDVVVWQFTNPEGTKKQCLDYVVER 490
>gi|124024349|ref|YP_001018656.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT
9303]
gi|123964635|gb|ABM79391.1| Poly A polymerase family protein [Prochlorococcus marinus str. MIT
9303]
Length = 412
Score = 83.0 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 58/378 (15%), Positives = 127/378 (33%), Gaps = 29/378 (7%)
Query: 31 IVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+ + D+D + R +KT GT ++
Sbjct: 44 LVGGAVRDGLLGRLQKQPDLDFIVPSKALELTRSLAKTLG---------GTCVVLD---- 90
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ--GKVIDYVGGLNDLR 146
+ R + + D RRDF +NA+ + +++D GGL+DL
Sbjct: 91 AERDMARLVIKGWTIDIATQEGSTLEEDLWRRDFRLNAIALTLEATPQLVDPTGGLSDLE 150
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
+ + + + + L ++ L + L + ERI
Sbjct: 151 QKKLVAVREQNLLDDPLRLLRGLRLIAELQL---SLGKQTLAWINCHHRLLPQAAPERIQ 207
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
+E+ +++ A + + + LD+ + +++++S+ +V + +
Sbjct: 208 AELQRIVTAPWADDV-----LPLLLRTGLLDLWQNTIEKISRPAPCLKVAKSLKPAEQAV 262
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ ++ R ++ + +L L ++ +
Sbjct: 263 ALPLARLTHLLSNEGLSALRFSRRQCQRCQLLRYWEERNDGMAFASLSELDRL---QLHL 319
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385
K AL ++ + + P P+ G + K +P G+ +G +L
Sbjct: 320 DLEKDLPALILQLPQISQMQWLERWRNADDPLFHPSPPVDGYALQKTLKLPKGQALGELL 379
Query: 386 VHCKQEWINSSFQLSQED 403
H +E Q ++
Sbjct: 380 RHLCKEKAFGRVQNRKQA 397
>gi|219126569|ref|XP_002183527.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405283|gb|EEC45227.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 631
Score = 83.0 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 70/399 (17%), Positives = 141/399 (35%), Gaps = 36/399 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFS-----------KTRYKVI---P 72
+ + GG VRD L+ L D+D+A + + ++ R VI P
Sbjct: 87 EIRVAGGWVRDKLLGLETHDVDVAVDSLTGVQFAKLVQGYLQQNSTEQSAGRIGVIAANP 146
Query: 73 TSISY-GTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYAD 130
+ + T + + D LR++ + + +V D+ RRDFT+NAL+ +
Sbjct: 147 SQSKHLETATMKIGRIEVDFCNLRAEELYEDHSRIPIVRFGSPLEDAKRRDFTVNALFFN 206
Query: 131 QQGKVIDYVG--GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG 186
++++ G+ DL +R I + L+D LR++R RF Y
Sbjct: 207 LHTRLVEDWTKSGIPDLISRRIVTPLEPVRTFLDDPLRVIRAIRFAVRYDFELDPALEAA 266
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI-VHMYNGGIFKEIFLDVQEISLDQ 245
+ + + +S ER+ E+ +L + + + + + ++ D
Sbjct: 267 CMCTEIHQALHVKVSRERVGKELEGMLSGRGANPIMAMDLIARLKLAGSVFCLPKVGEDN 326
Query: 246 --LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
+ + + DS + ++ L F + IR +
Sbjct: 327 VSFIKGHILGNAYTGQHDSNDIRKLRELGWEESRALLQLAPFVVASHIRTASKQAAKSGY 386
Query: 304 NQKTLSIPEIKKLFY--LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
+++ L + F LYG++ + K + + + I +++ +
Sbjct: 387 DKRLLPLGVFMLPFRTLLYGERQKLDKELLAIHYVFREGIKFKNKDIQAMVTLYENVDNM 446
Query: 362 LFPLTGDDVVKYGIPPG-------KKVGNILVHCKQEWI 393
+ LTG G G VG L K+ W+
Sbjct: 447 ISLLTGA---ADGFEGGNVVSFSRVDVGMQLRATKELWV 482
>gi|219555754|ref|ZP_03534830.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T17]
Length = 396
Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 63/388 (16%), Positives = 131/388 (33%), Gaps = 55/388 (14%)
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
I +GT + + R+D R+ +V F + D +RRDFT NA+
Sbjct: 1 IEFGTSAWVRATTAWRSPHSRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAVRVTA 60
Query: 134 ----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
+ +D +GGL LR + + +D LR+LR RF + G + A
Sbjct: 61 TGPGEFLDPLGGLAALRAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLGF-AVAPRVRAA 119
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------- 238
+ L +S+ER+ +E++KLL ++P I M G+ + ++
Sbjct: 120 IEEMAPQLARISAERVAAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRMAIDEHH 179
Query: 239 --QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281
+++ L+ + +A + + D +LR+ L+ K +
Sbjct: 180 QHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHHEVVG 239
Query: 282 -------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKI 331
+ +++ + + + Y+ ++ +L
Sbjct: 240 AKMVRKRMRALKYSKQMIDDISQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGALLPRLHK 299
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKK 380
+ + + + + L G+ ++ IP G +
Sbjct: 300 LVRADCTTRNKRRAARLQASYDRLEERIAELAAQEDLDRVRPDLDGNQIMAVLDIPAGPQ 359
Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLL 408
VG + K+ + ++E LL
Sbjct: 360 VGEAWRYLKELRLERGPLSTEEATTELL 387
>gi|118475008|ref|YP_892181.1| polyA polymerase family protein [Campylobacter fetus subsp. fetus
82-40]
gi|118414234|gb|ABK82654.1| polyA polymerase family protein [Campylobacter fetus subsp. fetus
82-40]
Length = 368
Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 64/404 (15%), Positives = 132/404 (32%), Gaps = 53/404 (13%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRY 68
F +++L + ++L ++ +VGG VRD L+ D DI I P + I
Sbjct: 11 FQNNELSTLKNILKHRTKRAYLVGGCVRDMLLGAKNIDFDIEVYDIDPFKFENIM--HDI 68
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--WKADSLRRDFTINA 126
SY + + K +DI+ R++ + + + K S RRDFT+NA
Sbjct: 69 GATGVGKSY----FVYKYKNYDISLPRTESKNGIGHKAFIVSYCNDEKIASKRRDFTMNA 124
Query: 127 LYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ + G+++D+ GG D++N+ +K + H ED LR+LR +F A +G K +
Sbjct: 125 MMINIFNGEILDFWGGRKDIQNKILKIV--DKHSFCEDSLRVLRAVQFAARFGLKADEQS 182
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ + L + + + + + + D
Sbjct: 183 LKIMRNISIDDLSKDRIRSELEKFFIAPHKTFGIELLSDLGLDKRLFGVKFEP-----DS 237
Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305
++++ S L ++ + K IL +++ +
Sbjct: 238 FGKIVQQHFNITHDSRSFLYDLINFYKLNPKEILDSLSLGKFYKKLINEPFLKRASRYEM 297
Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+++ + K + + D + +
Sbjct: 298 MKIALSMPLSNWLGLNTKNRVRMAVDLGFYDKTFNPNIDISKLSHLR------------- 344
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
GK +G L K+ ++ L+
Sbjct: 345 ------------GKDLGEHLKVLKEL-----------EIKAFLK 365
>gi|38640230|ref|NP_944186.1| hypothetical protein Aeh1p308 [Aeromonas phage Aeh1]
gi|33414915|gb|AAQ17958.1| hypothetical protein Aeh1ORF289c [Aeromonas phage Aeh1]
Length = 347
Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 48/265 (18%), Positives = 86/265 (32%), Gaps = 16/265 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD +MN +D D D ++ K P + +
Sbjct: 3 IYLVGGAVRDMVMNREPKDRDYVVVGSTHDEMIAKGYKQVGADFPVYLDH---------L 53
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ T Y V + + D RRDFT+NA+ G VID G
Sbjct: 54 GQEYALARTERSTGKGYNDFVTDFNPNVTLEQDLKRRDFTMNAMALGMNGVVIDPYNGQQ 113
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203
D++ R + + ED +R+LR RF A Y + K G +
Sbjct: 114 DIKERVVNVVNPQA--FHEDPVRVLRACRFAARYDFRLSTLTMECILRCIKDGRMDHLTS 171
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
+ + + H+ G K + + + ++ +++ +
Sbjct: 172 ERIWLEFEKSFGTKFDDFLAHLTLSGAVKALDIGGRFVNDVKINTLWMDHGHKNSSPVEQ 231
Query: 264 LRFIVLISWQDKKSILSMAKKFSLP 288
++ + K
Sbjct: 232 FAAMINHMDTKARDHFYSIVKVPCE 256
>gi|225555945|gb|EEH04235.1| poly(A) polymerase [Ajellomyces capsulatus G186AR]
Length = 999
Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 65/369 (17%), Positives = 118/369 (31%), Gaps = 34/369 (9%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSK---------------------- 65
GG VRD L+ + DID+A +R +
Sbjct: 55 LRFAGGWVRDKLLGVDSHDIDVAINCMTGERFGEGLKEYLDMPGNLEKYKACHSGNPSII 114
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + P + T D+ LR + +D + + D+LR
Sbjct: 115 DFIKIHKIEKNPEKSKHLETATTKIFGLDIDLVNLRKETYSDDSRNPQIEIGTPEEDALR 174
Query: 120 RDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD T+NAL+ + I+ G D+ N+ I+ + +D LR+LR RF +
Sbjct: 175 RDATVNALFYNIHTDTIEDFTGKGLQDMENKIIRTPLAPYQTFKDDPLRVLRLIRFASRL 234
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G I+ K ++ ERI E+ K L +PL A+ + G++ IF
Sbjct: 235 GYTIDSDTEEAMKIEDIKVALKAKITQERIGVEMEKTLRGPDPLTALQRINRLGLYDTIF 294
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+ Q+ + S + + S + +K + + + R +FL
Sbjct: 295 ANHQDNAGVDTSHWERGYNALALLLSKSTGNMTE-SQKTRKHVRDILIRNENERYFAWFL 353
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
+ K + A + ++ I + S
Sbjct: 354 AALAPWTIVADPKPSKSSKPPVPRATTVARDSLRADNRAAGIISAASKNYRMIWDIKSSF 413
Query: 356 IHWKKPLFP 364
+ + P
Sbjct: 414 LKNEIADTP 422
>gi|159109517|ref|XP_001705023.1| tRNA-nucleotidyltransferase, putative [Giardia lamblia ATCC 50803]
gi|157433100|gb|EDO77349.1| tRNA-nucleotidyltransferase, putative [Giardia lamblia ATCC 50803]
Length = 536
Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 64/264 (24%), Positives = 103/264 (39%), Gaps = 19/264 (7%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDR----VMRIFS 64
++ L I S+ NK + + GG VRD L+ DIDIA + + +
Sbjct: 25 LFNTLLAAIASV-NKQDTTLRVAGGWVRDKLLGYESHDIDIAVDNMTGVELGTIINEYIT 83
Query: 65 KTRYKVIPTS---------ISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWK 114
V T I D+ LR R +
Sbjct: 84 SQGETVHKMGVVSQNPEKSKHLETACITVCGYDVDLVNLRAESYQETSRVPSAIKFGSPH 143
Query: 115 ADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
D+LRRDFT+NAL+ + + I+ G DL++R I+ D + +D LRILR R
Sbjct: 144 EDALRRDFTVNALFYNINTREIEDFTGQGLADLKSRLIRTPLDYNITFYDDPLRILRAIR 203
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS-EINKLLEAKNPLNAIVHMYNGGIF 231
F G + K + S + ++ E+ ++L + L + ++N IF
Sbjct: 204 FSKRLGFELDKKMYQAVESKELTARLQIVSRQRYNKELIEILSGETALCGLRGLFNMHIF 263
Query: 232 KEIFLDVQEISLDQLSQVIEAEQV 255
+EIFL + S+++ V Q
Sbjct: 264 EEIFLYILNTSMNKELNVHSIYQR 287
>gi|55980800|ref|YP_144097.1| polyA polymerase family protein [Thermus thermophilus HB8]
gi|55772213|dbj|BAD70654.1| polyA polymerase family protein [Thermus thermophilus HB8]
Length = 818
Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 71/408 (17%), Positives = 133/408 (32%), Gaps = 44/408 (10%)
Query: 13 SDLINILSLLNKGEDK-SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS---KTRY 68
S + ++ L + + +VGGAVRD+L+ S D+D+A V R+
Sbjct: 442 SGVFRVVEALREAFPEGVYLVGGAVRDALLGRSGPDLDLAV-GPGVEVARVAQFLVDRFG 500
Query: 69 KVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
++GT ++ D+ R ++ V D RRD+++NA+
Sbjct: 501 GSYGLHYAFGTARVRLPFGLVVDLAESREEVYPYPGALPEVRRAPIARDLERRDYSVNAM 560
Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
D +D GGL DL R ++ + +ED R++R R A G + +
Sbjct: 561 AVDLGGLAFLDPYGGLRDLEARLLRPLHPLA--FVEDPTRVVRGARLAARLGFRFAEEVP 618
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + + +S E L + + + + +
Sbjct: 619 RLLAPALLPEVVAGASRSRLREELLLTLEEEAFYRALALLAELGALKALYGLDLPPEAPF 678
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ E + E ++ LL +K L A +LP +R L + ++
Sbjct: 679 LRLRAEEGLGEARLLLLLFH--------QKDPLERAAWLALPGRLREGLALLLAASRGEE 730
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
G + + A L + + + L + P
Sbjct: 731 VPKEA--------LGREPLRAAFLALFPEKEAWLKAERRVLMGRDLLKLGLKPGPK---- 778
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
VG IL + + +E+L L RKL+
Sbjct: 779 --------------VGEILRRVAEARRRGEVRSFEEEL-ALARKLLGD 811
>gi|3287692|gb|AAC25520.1| Similar to tRNA adenylyltransferase gb|U15930 from Lupinus albus.
EST gb|AA721797 comes from this gene [Arabidopsis
thaliana]
Length = 555
Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 23/192 (11%)
Query: 10 FHDSDLINILSLL------NKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRI 62
D + I L + + + GG VRD L+ DIDIA + +
Sbjct: 86 LTDKE-RKIFDRLLSTLRYCNLDTQLRVAGGWVRDKLLGKESDDIDIAIDNMSGSEFLDK 144
Query: 63 FSK------------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVF 109
F + T + P + T K+ ++ D LRS+ T+ +
Sbjct: 145 FKEYLSSRDEEVQGDTVIERNPDQSKHLETAKLRIYDQWIDFVNLRSEEYTENSRIPTMK 204
Query: 110 TRDWKADSLRRDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRI 167
K D+ RRD TIN+L+ + ++ G++DL++ I A L+D LR+
Sbjct: 205 FGTAKDDAFRRDLTINSLFYNINSGAVEDLTERGIDDLKSGKIVTPLPAKATFLDDPLRV 264
Query: 168 LRFFRFFAHYGE 179
LR RF A +G
Sbjct: 265 LRAVRFGARFGF 276
>gi|291533884|emb|CBL06997.1| tRNA nucleotidyltransferase/poly(A) polymerase [Megamonas
hypermegale ART12/1]
Length = 410
Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 47/259 (18%), Positives = 90/259 (34%), Gaps = 12/259 (4%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79
++ IVGG VRD + + +D D F + K S+
Sbjct: 8 QKIDDLGGTLYIVGGWVRDKIRGVIPKDKDFVI-CHVKE--EDFKQNFPKAKKVGKSFPV 64
Query: 80 IKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGK 134
+ K ++ +R + G + D RRD T+N++ + GK
Sbjct: 65 YLVKIEDKECEVAFVRKERKTGIGYTGFIVDYDEKVTIEEDLYRRDTTMNSIAYRVRDGK 124
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
+ID G D+ R I + ED +R LR R I+ D + +
Sbjct: 125 IIDPYKGREDIEKRCINAVSHH---FKEDPVRALRAARQACELNF-KINEDTINLMRSCR 180
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ +K ERI++E+ + L+ K P + + + +F ++ + E
Sbjct: 181 EEIKSEPQERIFNELQRALKTKKPSIFFRSLVKADLLEILFPEIYALIGKTQPVAFHPEG 240
Query: 255 VFEWKIDSLLRFIVLISWQ 273
++ + ++
Sbjct: 241 DAFEHTMEIVDLVADMTDD 259
>gi|156083260|ref|XP_001609114.1| tRNA nucleotidyltransferase/poly(A) polymerase family domain
containing protein [Babesia bovis T2Bo]
gi|154796364|gb|EDO05546.1| tRNA nucleotidyltransferase/poly(A) polymerase family domain
containing protein [Babesia bovis]
Length = 461
Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/190 (25%), Positives = 71/190 (37%), Gaps = 22/190 (11%)
Query: 12 DSDLINILSLLNKG------EDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFS 64
+ LL + + GG VRD L+N + +DIDIA I +
Sbjct: 41 SKQEKVLFDLLKECVDSNNLNIDLRVAGGWVRDKLLNQTSKDIDIALEHITGVDFCNYLN 100
Query: 65 KTRYKVIPTSISYG-------------TIKIICRKKYFDITTLRSDLITDGRYAKVVFTR 111
K + G T I D LRS+ ++
Sbjct: 101 AFTEKSYGFHKTVGVVKRRPEQSKHLETATINIMGLNIDFVNLRSEDYAQNSRIPIMKIG 160
Query: 112 DWKADSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILR 169
D++RRDFTINAL+ + I+ G++DL+ I+ A L+D LR++R
Sbjct: 161 TPFEDAMRRDFTINALFYNISKNAIEDYTGKGIDDLKAEVIRTCSPAFGTFLDDPLRVIR 220
Query: 170 FFRFFAHYGE 179
RF A G
Sbjct: 221 AARFAARLGY 230
>gi|150387946|ref|YP_001317995.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Alkaliphilus metalliredigens QYMF]
gi|149947808|gb|ABR46336.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Alkaliphilus metalliredigens QYMF]
Length = 472
Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 64/483 (13%), Positives = 132/483 (27%), Gaps = 108/483 (22%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM-RIFSKTRYKVIPTSIS 76
IL +VGG++RD L+N +++D+D+ P R +I + +
Sbjct: 8 ILETGKVSNIDIYLVGGSIRDFLLNRNIKDLDLIIKEDPGRFAEKIAKELQGSYFVLDQD 67
Query: 77 YGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
G ++ + D+ + + D AD +RD+TINA+ +
Sbjct: 68 RGIHRVKVKDGITIDLAKFQGE--------------DILADLAKRDYTINAMAYPLESGW 113
Query: 136 -------IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
ID GG D++ + I+ I +D +R+LR R + D
Sbjct: 114 PIDESQLIDPYGGQQDIKEKVIRQIS--EKNFQQDPIRMLRGPRLMGQLDFEMDDETKKS 171
Query: 189 ASIKAKKGLKILSSERIWSEI-------------------------------------NK 211
+ K
Sbjct: 172 IQRNCLLINEAPGERIATEIFTLLGEENTHEYLEFLDKELHVLDKIFPEIINMKDVGQCK 231
Query: 212 LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLIS 271
+++ M + + + + E L++ L
Sbjct: 232 YHVVDCWTHSLYTMRIAEMVIYHQGFFENHIREAYEVHTSKKVAGEHTRLQLIKLGALFH 291
Query: 272 WQDKKSILS----------------------MAKKFSLPREIRYFLISFFNCNF------ 303
K S +K L + + L + +
Sbjct: 292 DIGKPSAQKVDETGRVRFRGHEITGAEIVKVYGEKLKLSVKEQQMLYRYIELHMGPLVLY 351
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL--------------THQDTCFIL 349
+S + KLF G++ + L F + +
Sbjct: 352 KSNDVSGKALYKLFKEMGEETLDILLIAFADIVATRKLLDPEEEMGMFKIHIEYIANNYI 411
Query: 350 QVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
I + ++G ++++ +P G VG I+ K+ +E + +
Sbjct: 412 TRYKPIENISHI---ISGKEIMETLNLPEGILVGEIVEEVKKAIYFGKIPPEKERVLKYI 468
Query: 409 RKL 411
+++
Sbjct: 469 KEI 471
>gi|86610277|ref|YP_479039.1| polyA polymerase family protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558819|gb|ABD03776.1| polyA polymerase family protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 460
Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 62/445 (13%), Positives = 125/445 (28%), Gaps = 73/445 (16%)
Query: 28 KSCIVGGAVRDSLM----NL--------------SVQDIDIATTILPDR-VMRIFSKTRY 68
KS VGG++RD+ + + D+D+ + P + +
Sbjct: 32 KSYWVGGSLRDAYLAWLQGRAAGDPARDGGMESSASVDLDLMCAVDPVGWAAAVARRLGA 91
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ +I+ K D+ + D +RDFT NAL
Sbjct: 92 GFVVLDPERQIARIVLAKLTVDVGL--------------QAGSTPEEDLRQRDFTCNALA 137
Query: 129 ADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D Q + ++D GG D+R ++ + + D +R+LR +R A G +
Sbjct: 138 LDLQREQLLDPTGGQADIRQSRMRMVHPDNLS--ADPVRLLRGYRQAAQLGFGLDPATQE 195
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+A + + + L L + G+ + ++ S
Sbjct: 196 AIRERAPLLANVAAERVRAEIVALLEAGIPGLAHLQAAVAAGLLQAWLPHLKPESPGFPQ 255
Query: 248 QVIEAEQVFEWKI---------------------------------DSLLRFIVLISWQD 274
E W+ D ++ +
Sbjct: 256 AQAVWEWAGRWRPLYPRTLAELAQPLTSSREGRGRLLAVVLAALLWDPAGTEDSVLLTRT 315
Query: 275 KKSILSMAKKFSLPREIRY--FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
+ + + ++ R + P + + LY +
Sbjct: 316 AERVETELERLRFSRAEMRAIQKLHHLLPQLQLLLTDSPTPAQQWRLYQQAGSLFGGLAL 375
Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQE 391
LA+ + ++ + + L G D++ G PG VG +L ++
Sbjct: 376 LAVATGGDPQKLESWLKRYEDPQDPLAHLVPLLDGRDLLHSLGAKPGPWVGQLLQDLQEA 435
Query: 392 WINSSFQLSQEDLHHLLRKLIASSQ 416
Q E L R+ +
Sbjct: 436 QAWGQIQTRAEAL-SFARRWRGQQK 459
>gi|239904709|ref|YP_002951447.1| hypothetical protein DMR_00700 [Desulfovibrio magneticus RS-1]
gi|239794572|dbj|BAH73561.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 440
Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/446 (11%), Positives = 135/446 (30%), Gaps = 56/446 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQD-----IDIATTILPDRV 59
+ + D I + + + ++ ++++ D +D+AT +
Sbjct: 1 MAQPF---KDATAICKTIMRNGYDAYVI-----NAVLQEKALDKAAPELDVATDAPLAEI 52
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
++F ++ + ++ ++ + + + + T A
Sbjct: 53 QKLFPQS--EAYAEDGAF--ARLQSGDTILYLYPADTADASHPEESVARLTSRLIARLTA 108
Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
+ ++ G DL + ++ G I ++YLR +R RF A+Y
Sbjct: 109 KGLLPPHQACPYMPHQVEDHDGFADLSSGEVRLNGIPDEAIRQNYLRAVRALRFSANYNI 168
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ + +++ + +S + I E K+ + + +Y+ I +V
Sbjct: 169 PVEPNTFMAILRASRRIMDYVSVKDIMDEWRKVEAENMA-DFVERLYDTMILHWFLPEVA 227
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK--------------- 284
++ +++ E + +++R D L+
Sbjct: 228 TLARIKITSDDGVEYTLFEQTLAVMRHYPEELPYDWYGTLACLFHDVGKLHTAQYAGGDL 287
Query: 285 -------------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
P + + + + + + + F D+
Sbjct: 288 HFYQHHQVGAKVTRKILSRLGFPPDETDLVCNLVRGHMHFHFMLTDRGIRRF-RALDQYP 346
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDII-HWKKPLFPLTGDDVVKY-GIPPGKKVGN 383
+ T+++ +++L + L G +++ + PG VG
Sbjct: 347 RLIEMARADIKSVGGTYKEFNHNMKMLERTETPEEMLEPLLNGAQIMQLLSLKPGPAVGL 406
Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLR 409
I + I+ S+ED +R
Sbjct: 407 IRDALLKAQISGDVA-SREDAERFVR 431
>gi|303246743|ref|ZP_07333020.1| metal dependent phosphohydrolase [Desulfovibrio fructosovorans JJ]
gi|302491760|gb|EFL51640.1| metal dependent phosphohydrolase [Desulfovibrio fructosovorans JJ]
Length = 440
Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 53/440 (12%), Positives = 125/440 (28%), Gaps = 55/440 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQD-----IDIATTILPDRV 59
+ + D I + + + ++ ++++ D +D+AT +
Sbjct: 1 MAQPF---KDANAICKTIMRNGYDAYVI-----NAVLQEKALDPAAPELDLATDAPLAEL 52
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
++FS+T S ++ F+ + + TR
Sbjct: 53 QKLFSETEA----VSEDGAYARVRHGDTLFNFHPAETVDASHPEETVARLTRRMIDRLDA 108
Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
+ + D G DL ++ +G I ++YLR +R RF A+Y
Sbjct: 109 LGILPASQISPYLPHCRDDHDGFADLAGGEVRLLGIPDESIRQNYLRAVRALRFSANYNI 168
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ + +++ L +S + I E ++ + +Y+ I +V
Sbjct: 169 PVEANTLMAILRASRRILDYVSVKDIMDEWRRVEAENMAT-FVELLYDTMILHWFLPEVA 227
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK--------------- 284
++ + E + +++R D L+
Sbjct: 228 TLARIKQKTEEGVEYTLFEETLAVMRHYPEELPYDWYGTLACLFHDVGKLHTAEYAGGDL 287
Query: 285 -------------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
P + + + + + + F D+
Sbjct: 288 HFFQHHQVGAKVTRKILSRLGFPPDETDLVCNLVRGHMRFHFMLTDRGIRRFKAL-DQYP 346
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDII-HWKKPLFPLTGDDVVKY-GIPPGKKVGN 383
+ +++ L++L + L G +++ G+ PG VG
Sbjct: 347 RLIEMARADIKAVEGNYKEFNHNLKMLERTETPEEMLEPLLNGAQIMQLLGLKPGPVVGL 406
Query: 384 ILVHCKQEWINSSFQLSQED 403
I + I +E
Sbjct: 407 IRDALLKAQIAGDVTSLEEA 426
>gi|1168821|sp|P45749|CCA_AERHY RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
Length = 192
Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 16/160 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L D D + ++++ + + + K
Sbjct: 2 QTYLVGGAVRDRLLGLPQGDRDHLVVGATVEQMLAL------GFTQVGRDF--PVFLHPK 53
Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ R++ Y + D LRRD T+NA+ D++G++ D GG+
Sbjct: 54 TQQEYALARTERKQGRGYTGFVCHASPEVTLEQDLLRRDLTVNAIAEDEEGRLHDPYGGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
DL R ++ + ED LRILR RF A + +
Sbjct: 114 QDLERRVLRHV---SPAFAEDPLRILRVARFAARFHAQGF 150
>gi|124024926|ref|YP_001014042.1| poly A polymerase family protein [Prochlorococcus marinus str.
NATL1A]
gi|123959994|gb|ABM74777.1| Poly A polymerase family [Prochlorococcus marinus str. NATL1A]
Length = 395
Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/389 (13%), Positives = 116/389 (29%), Gaps = 43/389 (11%)
Query: 31 IVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIF-SKTRYKVIPTSISYGTIKIICRKK 87
+VGG+VRD L+ D+D + K I +++
Sbjct: 34 LVGGSVRDGLLKKLSPKPDLDFVIPVNAIEFSENLSKKIHATFIKLDEKRDIARLVINGW 93
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA--DQQGKVIDYVGGLNDL 145
D + K D LRRDF INA+ ++ ++ D +GG++DL
Sbjct: 94 TLDFA--------------RQVGENLKDDLLRRDFRINAIALKLREKPEIFDPMGGMDDL 139
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+N I I + + + + +
Sbjct: 140 KNNKIVAISEKNL---------------LDDPLRLLRGFRLMCELDFELEQKTKRFLKNN 184
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGI--FKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
++N + + + + ++ + + ++Q + + + E + +
Sbjct: 185 VEKLNNVAPERIKMEVLKIAHSKWNSSVWQTYSELQLLKRWNDDNLNDRELKRKDIASNN 244
Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
F ++ + + + L + F L+ D
Sbjct: 245 SLFGSFLAKLIFLLSDEGLSRLMFSKNEIKRCKNLRFWVHKINHLDDLSEDERFQLHID- 303
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
+ L L + ++ + P P+ G + K + +PPG +G
Sbjct: 304 LEQDLPSFILFLQERDSN----SWLKRWKDPSDPLFHPSPPVNGHLLQKVFQLPPGPFLG 359
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKL 411
++ + +E F E L + RK
Sbjct: 360 ELIRYLSKEKAYGRFFTDAEAL-EVARKW 387
>gi|15219925|ref|NP_173680.1| tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase,
putative [Arabidopsis thaliana]
gi|13877577|gb|AAK43866.1|AF370489_1 tRNA adenylyltransferase-like protein [Arabidopsis thaliana]
gi|23198306|gb|AAN15680.1| tRNA adenylyltransferase-like protein [Arabidopsis thaliana]
gi|332192145|gb|AEE30266.1| polynucleotide adenylyltransferase-like protein [Arabidopsis
thaliana]
Length = 605
Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 23/192 (11%)
Query: 10 FHDSDLINILSLL------NKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRI 62
D + I L + + + GG VRD L+ DIDIA + +
Sbjct: 86 LTDKE-RKIFDRLLSTLRYCNLDTQLRVAGGWVRDKLLGKESDDIDIAIDNMSGSEFLDK 144
Query: 63 FSK------------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVF 109
F + T + P + T K+ ++ D LRS+ T+ +
Sbjct: 145 FKEYLSSRDEEVQGDTVIERNPDQSKHLETAKLRIYDQWIDFVNLRSEEYTENSRIPTMK 204
Query: 110 TRDWKADSLRRDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRI 167
K D+ RRD TIN+L+ + ++ G++DL++ I A L+D LR+
Sbjct: 205 FGTAKDDAFRRDLTINSLFYNINSGAVEDLTERGIDDLKSGKIVTPLPAKATFLDDPLRV 264
Query: 168 LRFFRFFAHYGE 179
LR RF A +G
Sbjct: 265 LRAVRFGARFGF 276
>gi|171464272|ref|YP_001798385.1| tRNA cytidylyltransferase [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171193810|gb|ACB44771.1| tRNA cytidylyltransferase [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 376
Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 76/385 (19%), Positives = 136/385 (35%), Gaps = 35/385 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGA+RD+LM L V DID + ++ P + + +
Sbjct: 2 KIYAVGGAIRDTLMGLPVHDIDYVVVGSSVEEMIAK------GYRPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD------QQGKVI 136
+ R++ G + + D RRD TINA+ + Q G +I
Sbjct: 54 TQAEYALARTERKTGTGYKGFHFYADPAVTLEQDLERRDLTINAMAQEVGADGKQFGPII 113
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
D G DL + + + ED LR+LR RF A + E + + L A +
Sbjct: 114 DPYNGQEDLAAKIFRHV---SDAFAEDPLRLLRIARFAARFPEFRVADEALSALKAIVQS 170
Query: 197 LK--ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
+ L +ERIW E+ + + A P++ + N G + + + +
Sbjct: 171 GELGALPAERIWQELARGIVATKPMHLFQVLLNTGAASALLPSTLVAKVSEEPFREQLIV 230
Query: 255 VFEWKIDSLL-RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313
F + L R + + I S A +P E+R F F
Sbjct: 231 YFSMAGNGLEDRCAITLMDLPTSEIRSWADCVRMPIEVRDFSEIFSELRVLINQYRDASY 290
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373
+ + L K A NL + +L +++ + H + + +++
Sbjct: 291 QAVDVLTWFNRADVWRKPDRAQAILNLADKLGMNVLPLMNAMRHTQ----AINTAEIIA- 345
Query: 374 GIPP-----GKKVGNILVHCKQEWI 393
G+ G+++G+ + I
Sbjct: 346 GVAAEDRSNGERIGSAFEFARLAAI 370
>gi|332978790|gb|EGK15479.1| multifunctional CCA protein [Psychrobacter sp. 1501(2011)]
Length = 420
Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 52/250 (20%), Positives = 101/250 (40%), Gaps = 33/250 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ IVGGAVRD L++ + D D P+++++ I + + K
Sbjct: 11 QVYIVGGAVRDKLLDRAYTDKDFVVVGATPEQMVQA------GFIQVGEDF--PVFLHPK 62
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWK----ADSLRRDFTINALYA---------DQQG 133
+ R++ + Y + D LRRD TINA+ G
Sbjct: 63 TKEEYALARTERKSGKGYKGFEVYASPEVTIDEDLLRRDLTINAMAIEVKGLMDDTPISG 122
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL------ 187
VID G D++++ ++ + ED LR+LR RF+ + + + + +
Sbjct: 123 AVIDPYNGQQDIKDKVLRHV---SEAFSEDPLRVLRIARFYGRFYDPSAAQNFIIAPETV 179
Query: 188 --VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+ +I LK L++ER+W E ++ L ++P I + G I ++ + +
Sbjct: 180 NLIHTINDSGELKHLTAERVWQETSRALLQRSPQAYIDCLIEVGSLPHIMPNLAQALQNP 239
Query: 246 LSQVIEAEQV 255
+ + + +
Sbjct: 240 FIKSLVFKAL 249
>gi|323337860|gb|EGA79100.1| Cca1p [Saccharomyces cerevisiae Vin13]
Length = 452
Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 56/281 (19%), Positives = 102/281 (36%), Gaps = 24/281 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVM--------RIFSKTRYKVIPTSI---- 75
I GG VRD L+ D+DIA + ++ + ++K K
Sbjct: 54 LRITGGWVRDKLLGQGSHDLDIAINVMSGEQFATGLNEYLQQHYAKYGAKPHNIHKIDKN 113
Query: 76 ----SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ T D LRS+ + V + D+LRRD T+NAL+ +
Sbjct: 114 PEKSKHLETATTKLFGVEVDFVNLRSEKYXELSRIPKVCFGTPEEDALRRDATLNALFYN 173
Query: 131 QQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG-- 186
++ GL DL++ ++ A L+D LR+LR RF + +
Sbjct: 174 IHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRFNFTIDPEVMAE 233
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ +S ER+ E+ K+L PL A+ + + IF + S+ +
Sbjct: 234 MGDPQINVAFNSKISRERVGVEMEKILVGPTPLLALQLIQRAHLENVIFFWHNDSSVVKF 293
Query: 247 S--QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + +++ D++L + + L
Sbjct: 294 NEENCQDMDKINHVYNDNILNSHLKSFIELYPMFLEKLPIL 334
>gi|42571593|ref|NP_973887.1| tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase,
putative [Arabidopsis thaliana]
gi|332192146|gb|AEE30267.1| polynucleotide adenylyltransferase-like protein [Arabidopsis
thaliana]
Length = 603
Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 23/192 (11%)
Query: 10 FHDSDLINILSLL------NKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRI 62
D + I L + + + GG VRD L+ DIDIA + +
Sbjct: 86 LTDKE-RKIFDRLLSTLRYCNLDTQLRVAGGWVRDKLLGKESDDIDIAIDNMSGSEFLDK 144
Query: 63 FSK------------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVF 109
F + T + P + T K+ ++ D LRS+ T+ +
Sbjct: 145 FKEYLSSRDEEVQGDTVIERNPDQSKHLETAKLRIYDQWIDFVNLRSEEYTENSRIPTMK 204
Query: 110 TRDWKADSLRRDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRI 167
K D+ RRD TIN+L+ + ++ G++DL++ I A L+D LR+
Sbjct: 205 FGTAKDDAFRRDLTINSLFYNINSGAVEDLTERGIDDLKSGKIVTPLPAKATFLDDPLRV 264
Query: 168 LRFFRFFAHYGE 179
LR RF A +G
Sbjct: 265 LRAVRFGARFGF 276
>gi|330791394|ref|XP_003283778.1| hypothetical protein DICPUDRAFT_74768 [Dictyostelium purpureum]
gi|325086277|gb|EGC39669.1| hypothetical protein DICPUDRAFT_74768 [Dictyostelium purpureum]
Length = 573
Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 71/377 (18%), Positives = 129/377 (34%), Gaps = 25/377 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ--DIDIAT-TILPDRVMRIFSKTR---- 67
L +L N+ + + + GG VRD L+N D+D A + + K R
Sbjct: 41 LKQVLQYHNRNDIELRVAGGWVRDKLLNYKNNKLDLDFAINNTTGVEFVEMIQKYRTEKE 100
Query: 68 ---------YKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
K+ P + T+ I + LRSD + + +DS
Sbjct: 101 LKTVYSEYTIKMNPEKSKHLETVSITIDDFTIEFNALRSDFYDENSRIPQIQVGTLLSDS 160
Query: 118 LRRDFTINALYADQQGKVIDYVGGLN--DLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
LRRD TINAL+ + +++ G DL N I+ + + + ED LR R RF
Sbjct: 161 LRRDLTINALFYNINTLMVEDHSGYGLADLENGIIRTPLEPFNTLTEDPLRAFRILRFAT 220
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIW-SEINKLLEAKNPLNAIVHMYNGGIFKEI 234
+ K +K +S ERI+ + + ++ + GI I
Sbjct: 221 KFNFKIEPLLYQHIKTINNNIIKKVSKERIYTEFFLMMSVREYSEQYFSYLLDTGIINSI 280
Query: 235 FLDVQEI----SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
F+ I +L+Q ++ + F ++L I D L + +
Sbjct: 281 FIVNDYIPSSATLEQSVEIWKDSLEFIKTSNNLFPNTKEIENLDFYITLIFYPLYKNCKL 340
Query: 291 IRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
+ +IS + K + E +++ + +N + L
Sbjct: 341 KKTEIISVLKEFKSPSKLIKQMERSFEVSELFSILILKYINQLKDSSNSNRDQKSLKEFL 400
Query: 350 QVLSDIIHWKKPLFPLT 366
+ + +F +
Sbjct: 401 KEEEQENEIYELIFSIK 417
>gi|167524258|ref|XP_001746465.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775227|gb|EDQ88852.1| predicted protein [Monosiga brevicollis MX1]
Length = 322
Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 17/214 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK--TRYKVIPTSIS--------- 76
+ + GG VRD +++ DIDI + + + + + + K
Sbjct: 12 ARVAGGWVRDKMLHRPSLDIDITLDVVTGRQFVAMIANLIEQEKRSDVGFHVLPEASQSA 71
Query: 77 Y-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
+ D LR + V + DS RRDFTINALY +
Sbjct: 72 HLQVATATLFGLEIDFNQLRKETYDPESRIPAVEIGTIQEDSDRRDFTINALYYNINTDA 131
Query: 136 IDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASI 191
I+ G +DL ++ G+ R ++D LR+LR R+ Y + S
Sbjct: 132 IEDFDGRGLSDLEAGIVRSFGNPTQRFMDDPLRLLRLARYAGRYCFQVEATTLAAARQST 191
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
+ +S ER E+ KL +A N + ++H+
Sbjct: 192 IHEALQTKVSRERFGMELLKLFKADNAMACLLHL 225
>gi|326431434|gb|EGD77004.1| hypothetical protein PTSG_07347 [Salpingoeca sp. ATCC 50818]
Length = 560
Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 59/256 (23%), Positives = 107/256 (41%), Gaps = 19/256 (7%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT--------ILPDRVMRI---- 62
LI+++ + +D + GG VRD L+ DIDI T + +++++
Sbjct: 31 LIDVVQRFH-LKDTLRVAGGWVRDKLLGRESLDIDITTDSLSGSDLALHIEQLLKEKNEK 89
Query: 63 -FSKTRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
++ + +P ++ I D+ LR+++ V D+ RR
Sbjct: 90 DAARFKILPVPEQSAHLQVSTIKLYDLEIDLNALRTEVYDPESRIPKVSPGTILEDTARR 149
Query: 121 DFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
DFTINALY + I+ +DL ++ D ED LR+LR R+ YG
Sbjct: 150 DFTINALYYNINQDAIEDFTDTGLSDLDLGLVRTPADPLRSFKEDPLRVLRAIRYTGRYG 209
Query: 179 EK--NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
K + ++ + +S ER E++K+ +A +PL + + N G++ +F
Sbjct: 210 FKLEDAARHAILDPQVKECLQTKVSRERYGIEVDKMFKADHPLACLSLLCNLGLYDVVFH 269
Query: 237 DVQEISLDQLSQVIEA 252
E D Q++
Sbjct: 270 SPAEYHRDPTMQMVPF 285
>gi|289567863|ref|ZP_06448090.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T17]
gi|289541616|gb|EFD45265.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T17]
Length = 396
Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 62/387 (16%), Positives = 130/387 (33%), Gaps = 55/387 (14%)
Query: 76 SYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133
+GT + + R+D R+ +V F + D +RRDFT NA+
Sbjct: 2 EFGTSAWVRATTAWRSPHSRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAVRVTAT 61
Query: 134 ---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
+ +D +GGL LR + + +D LR+LR RF + G + A
Sbjct: 62 GPGEFLDPLGGLAALRAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLGF-AVAPRVRAAI 120
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------ 238
+ L +S+ER+ +E++KLL ++P I M G+ + ++
Sbjct: 121 EEMAPQLARISAERVAAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRMAIDEHHQ 180
Query: 239 -QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM---------------- 281
+++ L+ + +A + + D +LR+ L+ K +
Sbjct: 181 HKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHHEVVGA 240
Query: 282 ------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIF 332
+ +++ + + + Y+ ++ +L
Sbjct: 241 KMVRKRMRALKYSKQMIDDISQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGALLPRLHKL 300
Query: 333 LALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKKV 381
+ + + + + L G+ ++ IP G +V
Sbjct: 301 VRADCTTRNKRRAARLQASYDRLEERIAELAAQEDLDRVRPDLDGNQIMAVLDIPAGPQV 360
Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLL 408
G + K+ + ++E LL
Sbjct: 361 GEAWRYLKELRLERGPLSTEEATTELL 387
>gi|310798238|gb|EFQ33131.1| poly A polymerase head domain-containing protein [Glomerella
graminicola M1.001]
Length = 550
Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 73/472 (15%), Positives = 136/472 (28%), Gaps = 90/472 (19%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVM----------RIFSKTRYKVIPTSISY 77
GG VRD L+ + DID A + +
Sbjct: 54 LRWAGGWVRDKLLGIESHDIDTAINAMTGYAFSLELRNYCAQDEHAKTHKIGPDDMGSLH 113
Query: 78 G------------TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
T D LR + T +V + D+LRRD TIN
Sbjct: 114 RISANPDKSKHLETATTRMFGLDVDFVNLRKETYTQDSRNPMVEFGTAEEDALRRDATIN 173
Query: 126 ALYADQQGKVIDY-VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
AL+ + +++ GGL D+++R I+ D +D LR+LR RF + +
Sbjct: 174 ALFYNLHTGLVEDLTGGLADMKSRLIRTPMDPFQTFTDDPLRVLRLVRFASRLDFSIDPA 233
Query: 185 DGLVASIKA--KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
V + +S ER+ E+ K+L+ K P +++ + G+++ IF+D I
Sbjct: 234 ATAVMADARVLDALKLKISRERVGVEMEKMLKGKRPHSSLDLIRTLGLYEAIFMDPNNIQ 293
Query: 243 LDQ--LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF--------------- 285
+ LS+ + + + + A
Sbjct: 294 QPRPDLSKWRMVYDLLCSLACNSVPGSIYDVLVKSDEAAYYAWNLAAVIPYSHVENEINL 353
Query: 286 ---------------------------------SLPREIRYFLISFFNCNFNQKTLSIPE 312
+ + + ++
Sbjct: 354 PKSRVTLPLTTLVAREGIKAPNKLCDVITAAYRHRSNIVALKQSVCARDSTATERDTLGM 413
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPL 362
+ + G + L L L+ + LS + + P
Sbjct: 414 AIRRWDGQGTHWRVQVLYALLVEAKETLSCSTDAERIDFLSSWQTFLDHLAHLDVMEAPS 473
Query: 363 F--PLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
+ G + + GI PGK +G L C + + + + ++
Sbjct: 474 LKRLVDGRMLAKELGIRPGKWMGRALDVCVAWQLRHPDETDPTGAIDEVRQR 525
>gi|168003453|ref|XP_001754427.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694529|gb|EDQ80877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 508
Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/230 (20%), Positives = 82/230 (35%), Gaps = 20/230 (8%)
Query: 18 ILSLLNKGED--KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRI----FSKTRYKV 70
+++ L + + GG VRD L+ DIDIA +L
Sbjct: 20 LIATLKHFGLSTELRVAGGWVRDKLLGKDSADIDIALDNMLGKDFCEKVNDYLKSIGEST 79
Query: 71 IPTS---------ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
T + + + D LR++ + + + D+ RRD
Sbjct: 80 TGVGVIQSNPEQSKHLETATMKVKGVFVDFVNLRAETYANNSRIPTMEFGTAEQDAFRRD 139
Query: 122 FTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
TIN+L+ + + ++ G+ DL+ I+ L+D LR++R RF A +G
Sbjct: 140 LTINSLFYNINKRSVEDLTSQGIKDLKAGIIRTPLPPKETFLDDPLRVMRAVRFGARFGF 199
Query: 180 --KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227
+ +S ERI EI +L K P A+ +
Sbjct: 200 KLDDELKKAASCDEVKSALGHKVSRERIGKEIALMLNGKKPNTAMRCLEQ 249
>gi|313679974|ref|YP_004057713.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Oceanithermus profundus DSM 14977]
gi|313152689|gb|ADR36540.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Oceanithermus profundus DSM 14977]
Length = 444
Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 62/425 (14%), Positives = 132/425 (31%), Gaps = 65/425 (15%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
+VGGAVRD L +D D + + V G ++ + +
Sbjct: 21 WLVGGAVRDLWWGLEPRDFDFTAADPAAAARACAAASGGAVFCLDARRGHWRVRAGGRSY 80
Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149
D T + + D LRRD+T++AL A+++G V+ +DL R
Sbjct: 81 DFTPAP---------------QRLEEDLLRRDYTVDALAANRRGAVLAPATARHDLERRI 125
Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207
++ A + D LR LR R + + + A + ++ + + ER
Sbjct: 126 LRTPSPAV--LESDPLRPLRGARLAVTHALRPEARTLGWIRALAQRQRFGRRPAWERTRD 183
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ---------EISLDQLSQVIEAEQVF-- 256
E++++L ++ G+ + LD L +EA
Sbjct: 184 ELDRILMHPRAAWGFHLLWRWGLADAYLPEWTSGAGVEQRGYHHLDVLRHELEALHQLLR 243
Query: 257 ------------------------EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
W + ++ ++ R +
Sbjct: 244 RFPGAGRELRWAALLHDVAKPLVRRWDPERGYYRFFHHDEDGAALAATLLRRLRYGRAVV 303
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD---TCFIL 349
+ + ++ + D ++ + + +A + +
Sbjct: 304 AAVRRLVARHMQVPPSPPRARRRWLLRHRD-LLPDLVMLQIADRAATRGPRSGNVEARLR 362
Query: 350 QVLSDIIHWK------KPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQE 402
+ + + +P L G++V+ G+ PG VG L ++ + Q +E
Sbjct: 363 PLYEALQEAREAVRAGEPEPLLGGEEVMALLGLEPGPVVGRALQALREAQWLGTVQRREE 422
Query: 403 DLHHL 407
+ +
Sbjct: 423 AVRFV 427
>gi|27904565|ref|NP_777691.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|38372171|sp|Q89B06|CCA_BUCBP RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|27903962|gb|AAO26796.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 419
Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 77/346 (22%), Positives = 126/346 (36%), Gaps = 25/346 (7%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGA+R+ +NL VQD D P+ ++ + K K P +
Sbjct: 2 KVYLVGGAIRNKFLNLPVQDRDWVVVGATPEILLSLKFKQVGKGFPVF--------LHPY 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ + R D + F K D +RRD TINA+ D G ID G+
Sbjct: 54 SKEEYSLARVDRKIGVGHTGFSFDYSNKVTLKEDLMRRDLTINAIAQDNNGNYIDPFKGI 113
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL-- 200
D++NR ++ + ED LR+LR RF A + I +
Sbjct: 114 RDIKNRILRHV---SPAFSEDPLRVLRIARFCALFHHLGFRIATETMKIMSIVVKNNELL 170
Query: 201 --SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258
+ +R+W E K NP + N IF ++ + Q + F
Sbjct: 171 NLTRDRVWKETEKAFNTDNPHVYFQVLKNCNALSVIFPEINLVYQRQYYCIDNMYHNFYD 230
Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
D + + +S + + + F + + S + NQK L + K L
Sbjct: 231 TFD-IFMGLAELSKISRDIDIRFSYLFFCINRMLFIDTSSYILVINQKEL-VRYFKALCQ 288
Query: 319 LYGDKVMIAKLKIFLALHYNNLT---HQDTCFILQVLSDIIHWKKP 361
+ I + I + Y L+ +Q + I+ I W+KP
Sbjct: 289 RFCIPAYIKNVSICFSRFYKFLSVIHYQSSKDIIMFFYIIDAWRKP 334
>gi|157164540|ref|YP_001467081.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Campylobacter concisus 13826]
gi|112800409|gb|EAT97753.1| multifunctional CCA protein [Campylobacter concisus 13826]
Length = 390
Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 70/371 (18%), Positives = 127/371 (34%), Gaps = 37/371 (9%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRY 68
+ +S+L SL + +VGG VRD+L+ + D DI I P + + T
Sbjct: 25 YKNSELDFFRSLFAPFSKRVYLVGGCVRDALLGREIYDYDIEVYDIKPAKFDDLM--TSI 82
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINA 126
K SY I + K +D+ RS+ T + + D SLRRDFT+NA
Sbjct: 83 KASGVGKSY----FIYKYKNYDLGLPRSESKTGNSHKDFAVSYINDPSLASLRRDFTVNA 138
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ + I G + ED LR+LR +F A +
Sbjct: 139 MMMNIFNGEILDFHGGKKDLESKTLR-HIDSEKFKEDPLRVLRGVQFSARLDFSIANKTL 197
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ L +RI +E+ K +++ +++ +FKEIF + L
Sbjct: 198 ELMKTLDLAHLSK---DRINTELIKFFRSEHLEKGAFYLFKLSLFKEIFGVQIRKNDQFL 254
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
S++ A + + L K+ + M +
Sbjct: 255 SELKSARNFVDDERLFLYMLFGKFELDAKEILEKM-----------------------RL 291
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-LFPL 365
S I K + G L+I L + + ++ ++ +++ +
Sbjct: 292 PKSYFSILKEPFFNGMPSDNELLQIALNMPIKSWLGAYNKERIERAKELGIYERKFEPKI 351
Query: 366 TGDDVVKYGIP 376
+++ G
Sbjct: 352 DVREILAAGFK 362
>gi|218186506|gb|EEC68933.1| hypothetical protein OsI_37630 [Oryza sativa Indica Group]
Length = 536
Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 72/410 (17%), Positives = 132/410 (32%), Gaps = 49/410 (11%)
Query: 16 INILSLLNKGED--KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIF--------- 63
+L ++ + + GG VRD L+ DIDIA +
Sbjct: 34 RRLLDVVRHFGLGTQLRVAGGWVRDKLLGKDSTDIDIALDNMTGQNFCEKVNEYSELLGE 93
Query: 64 SKTRYKVIPTS----ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ VI + T +++ + D LRS+ + V K D+ R
Sbjct: 94 EQKGIGVIQCNPDQSKHLETARMLIFDIWIDFVNLRSEKYAENSRIPTVEIGTAKEDAFR 153
Query: 120 RDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TIN+L+ + ++ G+ DL+ I A L+D LR+LR RF A +
Sbjct: 154 RDLTINSLFFNINTNTVEDLTGRGIEDLKKGLIVTPLPAKATFLDDPLRVLRAIRFAARF 213
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNA---IVHMYNGGIFK 232
+ AS + K +S ERI E++ ++ K+P+NA I + +
Sbjct: 214 NFTLTEDLKDAASDEKVKSELGSKISKERIGHEVDLMMSDKHPVNAMCYIRDLGLFYVVF 273
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
D+ ++ + W + + V D KS +
Sbjct: 274 AFPEKPDPPVPDKCDRLCVSHIEVAWNLAHSIGCSVFSGGSDSKSQDEHRRLCFYSALFT 333
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
+ + ++K I + + + A + ++ +L
Sbjct: 334 PVRNTIYLDKKSKKIPVTNYIIRDSLKLKASDADTVVNVHAA-------SEKFAELINLL 386
Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKV----------GNILVHCKQEW 392
+ L + + ++ G IL K W
Sbjct: 387 ESNENLTTVKEKLDDEYL---------EIPTDSVKRVLAGLILREIKDFW 427
Score = 36.7 bits (83), Expect = 6.8, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWI 393
LH + ++ L WK L G ++ + G +G + +
Sbjct: 454 LHQRKEKYTRAERLITELELDAVWKM-KPLLDGKAIMGIMQVKGGPLIGKWQQRLLKWQL 512
Query: 394 NSSFQLSQEDLHHLLR 409
++E + + +
Sbjct: 513 AYPRGTTEECIEWMKQ 528
>gi|115487576|ref|NP_001066275.1| Os12g0171200 [Oryza sativa Japonica Group]
gi|113648782|dbj|BAF29294.1| Os12g0171200 [Oryza sativa Japonica Group]
Length = 537
Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 72/410 (17%), Positives = 132/410 (32%), Gaps = 49/410 (11%)
Query: 16 INILSLLNKGED--KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIF--------- 63
+L ++ + + GG VRD L+ DIDIA +
Sbjct: 35 RRLLDVVRHFGLGTQLRVAGGWVRDKLLGKDSTDIDIALDNMTGQNFCEKVNEYSELLGE 94
Query: 64 SKTRYKVIPTS----ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ VI + T +++ + D LRS+ + V K D+ R
Sbjct: 95 EQKGIGVIQCNPDQSKHLETARMLIFDIWIDFVNLRSEKYAENSRIPTVEIGTAKEDAFR 154
Query: 120 RDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TIN+L+ + ++ G+ DL+ I A L+D LR+LR RF A +
Sbjct: 155 RDLTINSLFFNINTNTVEDLTGRGIEDLKKGLIVTPLPAKATFLDDPLRVLRAIRFAARF 214
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNA---IVHMYNGGIFK 232
+ AS + K +S ERI E++ ++ K+P+NA I + +
Sbjct: 215 NFTLTEDLKDAASDEKVKSELGSKISKERIGHEVDLMMSDKHPVNAMCYIRDLGLFYVVF 274
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
D+ ++ + W + + V D KS +
Sbjct: 275 AFPEKPDPPVPDKCDRLCVSHIEVAWNLAHSIGCSVFSGGSDSKSQDEHRRLCFYSALFT 334
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
+ + ++K I + + + A + ++ +L
Sbjct: 335 PVRNTIYLDKKSKKIPVTNYIIRDSLKLKASDADTVVNVHAA-------SEKFAELINLL 387
Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKV----------GNILVHCKQEW 392
+ L + + ++ G IL K W
Sbjct: 388 ESNENLTTVKEKLDDEYL---------EIPTDSVKRVLAGLILREIKDFW 428
>gi|312262712|gb|ADQ53007.1| conserved hypothetical protein [Aeromonas phage PX29]
Length = 347
Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/265 (17%), Positives = 87/265 (32%), Gaps = 16/265 (6%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+VGGAVRD +MN +D D D ++ K P + +
Sbjct: 3 IYLVGGAVRDMVMNREPKDRDYVVVGSTHDEMIAKGYKQVGADFPVYLDH---------L 53
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ T Y V + + D RRDFT+NA+ G V+D G
Sbjct: 54 GQEYALARTERSTGKGYNDFVTDFNPNVTLEQDLKRRDFTMNAMALGLNGVVVDPYNGQQ 113
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203
D+++R + + ED +R+LR RF A Y + K G +
Sbjct: 114 DIKDRVVNVVNPQA--FHEDPVRVLRACRFAARYDFRLSTLTMECILRCIKDGRMEHLTS 171
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
+ + + H+ G K + + + ++ +++ +
Sbjct: 172 ERIWLEFEKSFGSKFDDFLAHLTLSGAVKALDIGGRFVNDVKINTLWMDHGHKNSSPVEQ 231
Query: 264 LRFIVLISWQDKKSILSMAKKFSLP 288
++ + K
Sbjct: 232 FAAMINHMDMKARDHFYSIVKVPCE 256
>gi|238927517|ref|ZP_04659277.1| possible tRNA adenylyltransferase [Selenomonas flueggei ATCC 43531]
gi|238884799|gb|EEQ48437.1| possible tRNA adenylyltransferase [Selenomonas flueggei ATCC 43531]
Length = 421
Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 59/413 (14%), Positives = 115/413 (27%), Gaps = 46/413 (11%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTIK 81
+ VGG VRD +D+D T I ++ +F ++
Sbjct: 22 RAAGARVFRVGGCVRDCFRGAEAKDVDYVLTGITKEKFCALFP----CAEKIGRTFPVYH 77
Query: 82 IICRKKYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
+ ++ R + + G + + + D RRD T+NA+ + +
Sbjct: 78 VRINGMCCEVAFARREVKTGMGYHGFDVEFDPSVSIEEDLYRRDTTMNAMAVELPAGTLL 137
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
G I ED +R LR R A +G + A++
Sbjct: 138 DPYGGRADIAAGIIRA--VSPHFSEDPVRALRAARQAAEFGYRVEKETLGQMHACAEELG 195
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
S + + + L P ++ + F ++ + E
Sbjct: 196 HEPSERLMGE-LRRALMTPRPSVFFRVLHAAELLTVTFPEIAALVGQTQPTEFHPEGDAY 254
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN---------FNQKTL 308
++L + S ++ R + L + +NQ+
Sbjct: 255 AHTMAMLDVVAERSDNIIVRFCALVHDLGKGRTPQEMLPHHYRHEETGLEALASWNQRMT 314
Query: 309 SIPEIKKLFYLYGDKVMIAKLKI----------------FLALHYNNLTHQDTCFILQVL 352
+ KK + M A +N + D + + L
Sbjct: 315 LPHDWKKAAAFVIRQHMRAPRLTHPGKIVDLLFGIESSGLSVADFNVVIRADHGSLPRYL 374
Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPP---GKKVGNILVHCKQEWINSSFQLSQE 402
+ + +TG D PP G ++G L + L +E
Sbjct: 375 RCGEAYLTAMRTVTGRD-----APPALRGAEIGAWLRTAHIAILK-KLLLEKE 421
>gi|118580470|ref|YP_901720.1| metal dependent phosphohydrolase [Pelobacter propionicus DSM 2379]
gi|118503180|gb|ABK99662.1| metal dependent phosphohydrolase [Pelobacter propionicus DSM 2379]
Length = 404
Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 57/345 (16%), Positives = 103/345 (29%), Gaps = 20/345 (5%)
Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGG VRD L+ +DID+ + D + ++++ S I
Sbjct: 18 GRVFLVGGCVRDHLLGRGCRDIDLVAALSGDE----LGRCGFRLVA-GRSTAPIWFRHDD 72
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146
+ I AD RRDFTIN+L D +G + D G D+
Sbjct: 73 AFGTIELTPLTCPE-----------ALDADLRRRDFTINSLAMDLRGNLHDPFDGRGDIM 121
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
R ++ +D LRI R FRF + + L+ + + L + ER
Sbjct: 122 GRFLRPCSP--DTFRDDPLRIFRAFRFESDGWSMTGECQYLIGQHQWSEELSRIPMERFS 179
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
E+ K A P + M G+ ++ ++ + + +
Sbjct: 180 REMLKACSAARPERFFLAMLKFGVGAGYLPELFRMARIPAGPLRYHPEGDLLTHSIQVMQ 239
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
V D + + + ++ L
Sbjct: 240 RVAERSTDPLARFCALFHDIGKLSTDPARYPSHHGHDRSGVELARQLCSRLRLSARYRNA 299
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIH--WKKPLFPLTGDD 369
L + +NN L+ + L ++ D
Sbjct: 300 LAAICRLHMTFNNWEELRDGTRLRAAEQAVKSGITGILPLVSAAD 344
>gi|71423978|ref|XP_812639.1| tRNA nucleotidyltransferase [Trypanosoma cruzi strain CL Brener]
gi|70877445|gb|EAN90788.1| tRNA nucleotidyltransferase, putative [Trypanosoma cruzi]
Length = 526
Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 89/235 (37%), Gaps = 32/235 (13%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI------LPDRVMRIFSK---- 65
I + L + GG VRD+L+ L QDIDIA + R S
Sbjct: 31 RRIFATL-------RVAGGWVRDALLGLHSQDIDIAIESSDLRHVSGELFAREVSAYQEA 83
Query: 66 --------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKA 115
+ +V P + T + + LR D T V
Sbjct: 84 MGMAARTVSVIRVNPELSKHIETATVCVCDTPIEFCALRHDEYTRSNSRIPEVRPATPLE 143
Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
D+LRRDFTINAL+ + +V DY GL DL+ R ++ + +D LR+LR RF
Sbjct: 144 DALRRDFTINALFYNLHTMEVEDYTSGLEDLQRRVLRCPLEPRETFTDDPLRLLRGIRFV 203
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI----NKLLEAKNPLNAIVHM 225
GE D + K L+ ++ + I K+L +P + +
Sbjct: 204 GQLGELGFSLDDSIMCCVNKDLLEKMTVKVSRERIGKELVKMLSGPSPEKCVELL 258
>gi|215448253|ref|ZP_03435005.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T85]
gi|289760079|ref|ZP_06519457.1| poly(A) polymerase [Mycobacterium tuberculosis T85]
gi|289715643|gb|EFD79655.1| poly(A) polymerase [Mycobacterium tuberculosis T85]
Length = 398
Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 62/376 (16%), Positives = 128/376 (34%), Gaps = 55/376 (14%)
Query: 87 KYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----KVIDYVGG 141
+ TT R+D R+ +V F + D +RRDFT NA+ + +D +GG
Sbjct: 15 TAWRSTTFRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAVRVTATGPGEFLDPLGG 74
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
L LR + + +D LR+LR RF + G + A + L +S
Sbjct: 75 LAALRAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLGF-AVAPRVRAAIEEMAPQLARIS 133
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------------QEISLDQLSQ 248
+ER+ +E++KLL ++P I M G+ + ++ +++ L+
Sbjct: 134 AERVAAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRMAIDEHHQHKDVYQHSLTV 193
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----------------------AKKFS 286
+ +A + + D +LR+ L+ K + +
Sbjct: 194 LRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHHEVVGAKMVRKRMRALK 253
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
+++ + + + Y+ ++ +L + +
Sbjct: 254 YSKQMIDDISQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGALLPRLHKLVRADCTTRNKR 313
Query: 344 DTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEW 392
+ + + L G+ ++ IP G +VG + K+
Sbjct: 314 RAARLQASYDRLEERIAELAAQEDLDRVRPDLDGNQIMAVLDIPAGPQVGEAWRYLKELR 373
Query: 393 INSSFQLSQEDLHHLL 408
+ ++E LL
Sbjct: 374 LERGPLSTEEATTELL 389
>gi|294941628|ref|XP_002783160.1| tRNA nucleotidyltransferase, putative [Perkinsus marinus ATCC
50983]
gi|239895575|gb|EER14956.1| tRNA nucleotidyltransferase, putative [Perkinsus marinus ATCC
50983]
Length = 511
Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 81/444 (18%), Positives = 137/444 (30%), Gaps = 68/444 (15%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATT-----ILPDRVMRIFSKT----------RYKVIPTS 74
GG VRD L+ DIDIA +V ++T + P
Sbjct: 44 RAAGGWVRDKLLGKESDDIDIAVDDMSGEAFAYKVKDFLTRTSPGASCSSVGVVRANPDQ 103
Query: 75 ISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ T + D+ LR++ T VV + D+ RRDFTINAL+ + +
Sbjct: 104 SKHLETATLRVFDISLDVNNLRTETYTLDSRIPVVALGTPQEDASRRDFTINALFYNLRT 163
Query: 134 KVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVA 189
++ G +DLR I+ + +D LRILR RF G +
Sbjct: 164 ASVEDFTGTGLDDLRAGVIRTPLEPTITFQDDPLRILRAVRFSTRLGFKLDDEIMKAASD 223
Query: 190 SIKAKKGLKILSSERIWSEINKL-LEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ--- 245
L +S ER EI+K+ + L+++ + + GI + ++
Sbjct: 224 PNIYGLLLVKVSRERWGVEIHKMLIRRLTSLDSLDMLASLGIINVLTTVGDSAKFEEPDA 283
Query: 246 ------------LSQVIEAEQVFEWKIDSLLRFIVLISWQD-----------------KK 276
+ V E E D + I
Sbjct: 284 VPKDQGSIVRALVQNVREVEPHHTLSDDQHYALTLAILTSGVYGLHVRERPSKPARCACY 343
Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI----PEIKKLFYLYGDKVMIAKLKIF 332
+L K R IS ++ + I + ++A
Sbjct: 344 GVLRHGLKLPNADSERASAISEVAWKLSRASQEELVNPVFIGHCMRYLKEDWVVALCLAE 403
Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQE 391
+ C +LS +I P+ G +V +G+P G L
Sbjct: 404 CLAAAHERQRYVDCRQRVLLSGLIGCWNWRAPINGTSLVNDFGMPRG----EGLSVLLDR 459
Query: 392 WIN---SSFQ---LSQEDLHHLLR 409
++ S+ +E+ L+
Sbjct: 460 QVDRLLSNCSMVVNDEEEYKAWLQ 483
>gi|322816012|gb|EFZ24472.1| tRNA nucleotidyltransferase, putative [Trypanosoma cruzi]
Length = 526
Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 61/239 (25%), Positives = 93/239 (38%), Gaps = 31/239 (12%)
Query: 18 ILSLLNKGEDK------SCIVGGAVRDSLMNLSVQDIDIATTI------LPDRVMRIFSK 65
I +LL + ++ + GG VRD+L+ L QDIDIA + R S
Sbjct: 20 IFALLLRVNEERRVFATLRVAGGWVRDALLGLHSQDIDIAIESSDLRHVSGELFAREVSA 79
Query: 66 ------------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTR 111
+ +V P + T + + LR D T V
Sbjct: 80 YQEAMGMAARTVSVIRVNPELSKHIETATVCVCDTPIEFCALRHDEYTRSNSRIPEVRPA 139
Query: 112 DWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170
D+LRRDFTINAL+ + +V DY GL DL+ R ++ + +D LR+LR
Sbjct: 140 TPLEDALRRDFTINALFYNLHTMEVEDYTSGLEDLQRRVLRCPLEPRETFTDDPLRLLRG 199
Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI----NKLLEAKNPLNAIVHM 225
RF GE D + K L+ ++ + I K+L +P + +
Sbjct: 200 IRFVGQLGELGFSLDDSIMCCVNKDLLEKMTVKVSRERIGKELVKMLSGPSPEKCVEIL 258
>gi|296412019|ref|XP_002835725.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629515|emb|CAZ79882.1| unnamed protein product [Tuber melanosporum]
Length = 519
Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 72/455 (15%), Positives = 141/455 (30%), Gaps = 75/455 (16%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK----------------TRYKVI 71
GG VRD L+ DID+ + S+ ++ +
Sbjct: 45 LRFTGGWVRDKLLGTRSVDIDVGVNNMSGYDFATRLSEYMNANRDEPSSKPCRVSKIESN 104
Query: 72 PTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
P + T D LRS+ + + + D+LRRD TINAL+ +
Sbjct: 105 PEKSKHLETATAKVLGLDIDFVNLRSETYSGDSRIPHMEFGTPEKDALRRDCTINALFYN 164
Query: 131 QQGKVIDYVG--GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ ++ GL DL R I+ +D LR+LR RF + G I +
Sbjct: 165 LHTEQVEDFTGLGLQDLTARLIRTPLPPRETFTDDPLRVLRLIRFSSRLGF-TIVPEVKA 223
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQLS 247
A + +S ER+ EI K+ + NP ++ ++ ++ EIF +Q++ + +
Sbjct: 224 AMKLPEIKASKISRERVGIEIEKMFKGCNPHASLSLIHELDLYNEIFAPPIQDLPVLPVQ 283
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF---------------------- 285
+ A + ++ IS +
Sbjct: 284 DMKIAADIVRRRLFEHAHSRPRISKLLMTTPERYLAWLIAAASPWKNQPVFPADKKKAPA 343
Query: 286 ----------------------SLPREIRYFLISFFNCNFNQKTLSIP-----EIKKLFY 318
R +++ KT + K
Sbjct: 344 AATAIKEGLKCPNHVSGTIAKAFTNRRAIQNMVTNVEHWGRSKTGMEMHALGADWKNQVG 403
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL--SDIIHWKKPLFPLTGDDV-VKYGI 375
++ + + L+ + D+ L G D+ +Y +
Sbjct: 404 ACLMFELMDSEEKNASDDEVEGVMDKYETFLKTIAERDLEEAYTIKSLLNGQDIAAEYAL 463
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
PG + + Q +++ + +++L +R+
Sbjct: 464 LPGPWMAPTIKASLQHQLDNPHKP-KDELLQWVRE 497
>gi|167987250|gb|ACA13297.1| putative chloroplast polyA polymerase precursor [Chlamydomonas
reinhardtii]
Length = 960
Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 12/124 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ L GG VRD + DIDI T V +F +
Sbjct: 281 EAALAVVRRLRSHGFTGMFAGGWVRDQFLGRPSPDIDIVTNASITEVYEVFRRDC----- 335
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
T+++ F++T+ R L+ D A+ D+ RDFT NAL+ +
Sbjct: 336 KHKGAATMEVTADGLAFEVTSYRGGLVGDCEEAEW-------RDAAYRDFTCNALFFEPT 388
Query: 133 GKVI 136
Sbjct: 389 LDEH 392
>gi|159469313|ref|XP_001692812.1| chloroplast-targeted ntr II family protein [Chlamydomonas
reinhardtii]
gi|158278065|gb|EDP03831.1| chloroplast-targeted ntr II family protein [Chlamydomonas
reinhardtii]
Length = 771
Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 12/124 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ ++ L GG VRD + DIDI T V +F +
Sbjct: 281 EAALAVVRRLRSHGFTGMFAGGWVRDQFLGRPSPDIDIVTNASITEVYEVFRRDC----- 335
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
T+++ F++T+ R L+ D A+ D+ RDFT NAL+ +
Sbjct: 336 KHKGAATMEVTADGLAFEVTSYRGGLVGDCEEAEW-------RDAAYRDFTCNALFFEPT 388
Query: 133 GKVI 136
Sbjct: 389 LDEH 392
>gi|260943263|ref|XP_002615930.1| hypothetical protein CLUG_04812 [Clavispora lusitaniae ATCC 42720]
gi|238851220|gb|EEQ40684.1| hypothetical protein CLUG_04812 [Clavispora lusitaniae ATCC 42720]
Length = 575
Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 49/222 (22%), Positives = 83/222 (37%), Gaps = 22/222 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK----------------TRYKV 70
+ I GG VRD L+ D+DIA + + K
Sbjct: 70 ELRITGGWVRDKLLGKESNDLDIAINLLSGQDFASKLLEYSQQKGMDLGKNATSLHTIKK 129
Query: 71 IPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
P + T D LR++ T+ V+ + D+LRRD T+NAL+
Sbjct: 130 NPEKSKHLETCTTKLFGLDIDFVNLRNEQYTEDSRVPVIECGTAEEDALRRDATLNALFY 189
Query: 130 DQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ I+ G DL N ++ ++D LR+LR RF + + S
Sbjct: 190 NLNKSEIEDFTGKGLADLENGILRTPLQPLSTFVDDPLRVLRLIRFACRFNFQIESSTLE 249
Query: 188 VASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227
+ K + +S ER+ E++K+L + N + + +
Sbjct: 250 SMKDEKIKTALIHKISRERVGVEMDKILTSDNVPYGLRLLNH 291
>gi|308158897|gb|EFO61457.1| tRNA-nucleotidyltransferase, putative [Giardia lamblia P15]
Length = 536
Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 62/259 (23%), Positives = 102/259 (39%), Gaps = 18/259 (6%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK----TRYK 69
L+ L+ +NK + + GG VRD L+ DIDIA + + I ++
Sbjct: 29 LLAALASVNKHDTTLRVAGGWVRDKLLGYESHDIDIAIDNMTGVELGTIINEYIMSQGET 88
Query: 70 VIPTS---------ISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLR 119
V T I D+ LR R D+LR
Sbjct: 89 VHKMGVVSQNPEKSKHLETACITVCGYDVDLVNLRAESYQKTSRVPNATKFGSPHEDALR 148
Query: 120 RDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RDFT+NAL+ + + I+ G DL++R I+ D + +D LRILR RF
Sbjct: 149 RDFTVNALFYNINTREIEDFTGQGLADLKSRLIRTPLDCNITFYDDPLRILRAIRFSKRL 208
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWS-EINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
G + K + S + ++ E+ ++L + L + +++ IF+EIFL
Sbjct: 209 GFELDKKMYRATESKELTARLQIVSRQRYNKELIEILSGEAALCGLRGLFDMHIFEEIFL 268
Query: 237 DVQEISLDQLSQVIEAEQV 255
+ S+++ V
Sbjct: 269 HILNTSMNKELNVHSIYHR 287
>gi|323706294|ref|ZP_08117860.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323534346|gb|EGB24131.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 467
Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 84/367 (22%), Positives = 145/367 (39%), Gaps = 36/367 (9%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI-FSKTRYKVIPT 73
+ + +L+ +K IVGG +RD ++N+++ D D A V ++ K + +P
Sbjct: 5 INRLKRILSDEAEKVYIVGGTIRDRILNVNISDYDFAVLGDAASVSKLVCDKLKGSYVPY 64
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ GT +++ D T +R + + D + RDFTINA+
Sbjct: 65 AEDRGTYRVVYENVVLDFTQIRGE--------------NIDEDLIHRDFTINAMAIRLND 110
Query: 134 KV-----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+D +GGL DLR + IK +G +D LR+LR RF A Y +ID D
Sbjct: 111 FFDVDLIVDPLGGLKDLREKKIKCVG--KSSFDDDPLRMLRAIRFAAKYNF-SIDEDSKN 167
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL----- 243
+ +K +SSERI SEI +L++K + M G+ +F ++ E+
Sbjct: 168 LIREKADLIKNVSSERIMSEIYSILKSKESFKYLQMMDELGLIDALFPEIAEMKEIGKCY 227
Query: 244 -DQLSQVIEAEQVFE--WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
L + + E I + LRF I KK + + +++ F
Sbjct: 228 YQVLDSWHHSIKTIEEYETIVNELRFPSDIENLVKKYLDKDLSSGNKLKDVLKLAAMFHE 287
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+ + FY + K I L ++ I +++ + H
Sbjct: 288 IGKKDAIYIDSDNRLQFYNHDVKGEKIVADIAKRLKLA---KKEASLIKKMV--LYHVNP 342
Query: 361 PLFPLTG 367
L + G
Sbjct: 343 FLLYIDG 349
>gi|145590175|ref|YP_001156772.1| polynucleotide adenylyltransferase region [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145048581|gb|ABP35208.1| Polynucleotide adenylyltransferase region [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 376
Score = 80.3 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 53/219 (24%), Positives = 86/219 (39%), Gaps = 18/219 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K VGGA+RD+LM+L V DID + ++ P + +
Sbjct: 2 KIYAVGGAIRDTLMSLPVHDIDYVVVGSSVEEMVAK------GFRPVGKDF--PVFLHPD 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQ--QGKVIDYVG 140
+ R++ G + + + D RRD TINA+ + G I +
Sbjct: 54 TQAEYALARTERKTGKGYKGFHFYADPSVTLEQDLERRDLTINAMAQEVGLDGTWIGPIL 113
Query: 141 G-LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GL 197
N + K ED LR+LR RF A + E ++ + ++A + L
Sbjct: 114 DPYNGQEDLAAKVFRHVSDAFAEDPLRLLRIARFAARFPEFSVADETMIALKAIVQSGEL 173
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
LS+ERIW E+ + + A P++ + N G K
Sbjct: 174 AALSAERIWQELARGMTAAKPMHMFQVLLNTGAAKTFLP 212
>gi|6321016|ref|NP_011095.1| Cca1p [Saccharomyces cerevisiae S288c]
gi|135969|sp|P21269|CCA1_YEAST RecName: Full=CCA tRNA nucleotidyltransferase, mitochondrial;
AltName: Full=CCA-adding enzyme; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyltransferase; AltName: Full=tRNA
nucleotidyltransferase; Flags: Precursor
gi|172994|gb|AAA35160.1| transfer RNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|603409|gb|AAB64695.1| Cca1p: tRNA nucleotidyltransferase(tRNA CCA-pyrophosphorylase)
[Saccharomyces cerevisiae]
gi|151944885|gb|EDN63144.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae YJM789]
gi|190405724|gb|EDV08991.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae RM11-1a]
gi|207345792|gb|EDZ72498.1| YER168Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271312|gb|EEU06382.1| Cca1p [Saccharomyces cerevisiae JAY291]
gi|285811802|tpg|DAA07830.1| TPA: Cca1p [Saccharomyces cerevisiae S288c]
Length = 546
Score = 80.3 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 57/281 (20%), Positives = 103/281 (36%), Gaps = 24/281 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVM--------RIFSKTRYKVIPTSI---- 75
I GG VRD L+ D+DIA + ++ + ++K K
Sbjct: 63 LRITGGWVRDKLLGQGSHDLDIAINVMSGEQFATGLNEYLQQHYAKYGAKPHNIHKIDKN 122
Query: 76 ----SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ T D LRS+ T+ V + D+LRRD T+NAL+ +
Sbjct: 123 PEKSKHLETATTKLFGVEVDFVNLRSEKYTELSRIPKVCFGTPEEDALRRDATLNALFYN 182
Query: 131 QQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG 186
++ GL DL++ ++ A L+D LR+LR RF + +
Sbjct: 183 IHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRFNFTIDPEVMAE 242
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ +S ER+ E+ K+L PL A+ + + IF + S+ +
Sbjct: 243 MGDPQINVAFNSKISRERVGVEMEKILVGPTPLLALQLIQRAHLENVIFFWHNDSSVVKF 302
Query: 247 S--QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + +++ D++L + + L
Sbjct: 303 NEENCQDMDKINHVYNDNILNSHLKSFIELYPMFLEKLPIL 343
Score = 40.6 bits (93), Expect = 0.42, Method: Composition-based stats.
Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 333 LALHYNNLTHQDTCFILQVLSD---------IIHWKKPLFPLTGDDVVKY-GIPPGKKVG 382
L L + + Q ++ + + + + G + K + PG +G
Sbjct: 454 AFLKIPKLETKKIELLFQNYNEFYSYIFDNNLNNCHELKPIVDGKQMAKLLQMKPGPWLG 513
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
I + ++ + ++L L+ ++
Sbjct: 514 KINNEAIRWQFDNP-TGTDQELITHLKAIL 542
>gi|148265148|ref|YP_001231854.1| polynucleotide adenylyltransferase region [Geobacter uraniireducens
Rf4]
gi|146398648|gb|ABQ27281.1| Polynucleotide adenylyltransferase region [Geobacter uraniireducens
Rf4]
Length = 450
Score = 80.3 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 65/443 (14%), Positives = 129/443 (29%), Gaps = 57/443 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D ++ I L + K+ +VGG VRD L+ ++D+D A T + R F+K+
Sbjct: 11 DENVRIIGGLAGEFAVKAYLVGGGVRDLLLGRRLKDLDFALTGACAELPRRFAKSIGGSF 70
Query: 72 PTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
++ +R + D +RDFTINAL
Sbjct: 71 ----------FWLDEERLQGRVVRKGGDGVLTFDFAPQRGETIEEDLSQRDFTINALALP 120
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHH-RILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
G + + I +D LR+LR RF A G ID
Sbjct: 121 LAGGKYALIDPTGGFSDLQKGIIRACSPASFSDDPLRLLRAVRFAATLGF-AIDEASRQT 179
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL------------- 236
L+ ++ ER+ E+ ++L A ++ + + G+ +I
Sbjct: 180 ITMESALLERVAGERVRDELFQILAAPGIETSLNALLDSGLLGQIVPLVMFGAGSLPTAE 239
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR------- 289
+ + +++ E++ D + ++ + + SL +
Sbjct: 240 ERRSSVEHRIAVAGRVERIIAEPADYFPAGNEQLLQHLRREVEAGISILSLVKLAALIDS 299
Query: 290 ------EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
+ S + + +
Sbjct: 300 KAAPGALEVVAGKLRLGNRSRRILRSSASDGASLSAMTPEKLSDRAMYRFFRDSEPAGPG 359
Query: 344 DT--------------CFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHC 388
++ + L+G +V++ G PG VG +
Sbjct: 360 LIIIALAGGAAAIELCARLITYYFSGYVAEGADLLLSGSEVMRLLGCGPGPAVGEAMERL 419
Query: 389 KQEWINS-SFQLSQEDLHHLLRK 410
++ S ++ + L K
Sbjct: 420 REA--ESTGMASTKAEAEAFLTK 440
>gi|213404356|ref|XP_002172950.1| tRNA nucleotidyltransferase [Schizosaccharomyces japonicus yFS275]
gi|212000997|gb|EEB06657.1| tRNA nucleotidyltransferase [Schizosaccharomyces japonicus yFS275]
Length = 487
Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 80/456 (17%), Positives = 149/456 (32%), Gaps = 75/456 (16%)
Query: 16 INILSLLNKGED-----------KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIF 63
+++LL K D + + GG VRD L+ DID+ I
Sbjct: 12 QKVINLLKKTADYVEKTKSLTSLEVRLAGGWVRDKLLGCQSNDIDVTLKDISGQDFALAI 71
Query: 64 SKT-----------------RYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYA 105
+ + P + T + D +LR++ D
Sbjct: 72 VEFVRSQEATTLVPADSVLGKLVTNPEQSQHLETATMGLYGLDIDFVSLRAETYPDSSRI 131
Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILED 163
VV D+LRRDFT+N+L+ + + I+ + G DL +R++ DA ++D
Sbjct: 132 PVVTPGTVLTDALRRDFTVNSLFYNVRTDEIEDITGRGLKDLASRSLVTPVDAVASFIDD 191
Query: 164 YLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
LRILR RF + + D+ LS ERI E++K+L + NP A
Sbjct: 192 PLRILRGIRFASRFNFTLHDTFFNAIRHPKVLDVFFIKLSKERIGEELSKMLNSTNPEVA 251
Query: 222 IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV--------------FEWKIDSLLRFI 267
+ +Y+ GI I + Q+ + + A + D ++
Sbjct: 252 VGMLYDTGIAALILDEFTPEQYKQVQRALVAARQAVNYFSDASTQPSPLSSTGDFVVWLF 311
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
+ + +L K+ +P + + N + S K L ++
Sbjct: 312 ATLVPWRNEKMLEKKKEVYVPTKTSRDRLKLPNPVVIPLSQSFAFAKSFDKLAHQPESLS 371
Query: 328 K---------------LKIFLALHYNNLTHQDTC----------FILQVLSD-IIHWKKP 361
+ + + A ++ + D + +V +
Sbjct: 372 RVTIGNFIREVGSNWHVALACAYVWSAVERSDEPMHKTFENFETLLQRVYDYNLQDAYSW 431
Query: 362 LFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSS 396
L G + + + PG V + + +
Sbjct: 432 KPILNGKQITQQLHVKPGPDVKSAIEKVLEWQFEHP 467
>gi|323355345|gb|EGA87170.1| Cca1p [Saccharomyces cerevisiae VL3]
Length = 537
Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 57/281 (20%), Positives = 103/281 (36%), Gaps = 24/281 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVM--------RIFSKTRYKVIPTSI---- 75
I GG VRD L+ D+DIA + ++ + ++K K
Sbjct: 54 LRITGGWVRDKLLGQGSHDLDIAINVMSGEQFATGLNEYLQQHYAKYGAKPHNIHKIDKN 113
Query: 76 ----SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ T D LRS+ T+ V + D+LRRD T+NAL+ +
Sbjct: 114 PEKSKHLETATTKLFGVEVDFVNLRSEKYTELSRIPKVCFGTPEEDALRRDATLNALFYN 173
Query: 131 QQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG 186
++ GL DL++ ++ A L+D LR+LR RF + +
Sbjct: 174 IHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRFNFTIDPEVMAE 233
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ +S ER+ E+ K+L PL A+ + + IF + S+ +
Sbjct: 234 MGDPQINVAFNSKISRERVGVEMEKILVGPTPLLALQLIQRAHLENVIFFWHNDSSVVKF 293
Query: 247 S--QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + +++ D++L + + L
Sbjct: 294 NEENCQDMDKINHVYNDNILNSHLKSFIELYPMFLEKLPIL 334
Score = 40.6 bits (93), Expect = 0.42, Method: Composition-based stats.
Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 333 LALHYNNLTHQDTCFILQVLSD---------IIHWKKPLFPLTGDDVVKY-GIPPGKKVG 382
L L + + Q ++ + + + + G + K + PG +G
Sbjct: 445 AFLKIPKLETKKIELLFQNYNEFYSYIFDNNLNNCHELKPIVDGKQMAKLLQMKPGPWLG 504
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
I + ++ + ++L L+ ++
Sbjct: 505 KINNEAIRWQFDNP-TGTDQELITHLKAIL 533
>gi|323348859|gb|EGA83097.1| Cca1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 537
Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 56/281 (19%), Positives = 102/281 (36%), Gaps = 24/281 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVM--------RIFSKTRYKVIPTSI---- 75
I GG VRD L+ D+DIA + ++ + ++K K
Sbjct: 54 LRITGGWVRDKLLGQGSHDLDIAINVMSGEQFATGLNEYLQQHYAKYGAKPHNIHKIDKN 113
Query: 76 ----SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ T D LRS+ + V + D+LRRD T+NAL+ +
Sbjct: 114 PEKSKHLETATTKLFGVEVDFVNLRSEKYXELSRIPKVCFGTPEEDALRRDATLNALFYN 173
Query: 131 QQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG 186
++ GL DL++ ++ A L+D LR+LR RF + +
Sbjct: 174 IHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRFNFTIDPEVMAE 233
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ +S ER+ E+ K+L PL A+ + + IF + S+ +
Sbjct: 234 MGDPQINVAFNSKISRERVGVEMEKILVGPTPLLALQLIQRAHLENVIFFWHNDSSVVKF 293
Query: 247 S--QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + +++ D++L + + L
Sbjct: 294 NEENCQDMDKINHVYNDNILNSHLKSFIELYPMFLEKLPIL 334
Score = 39.0 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 333 LALHYNNLTHQDTCFILQVLSD---------IIHWKKPLFPLTGDDVVKY-GIPPGKKVG 382
L L + + Q ++ + + + + G + K + PG +G
Sbjct: 445 AFLKIPKLETKKIELLFQNYNEFYSYIFDNNLNNCHELKPIVDGKQMAKLLQMKPGPWLG 504
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
I + ++ + ++L L+ ++
Sbjct: 505 KINNEAIRWQFDNP-TGTXQELITHLKAIL 533
>gi|297624778|ref|YP_003706212.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Truepera radiovictrix DSM 17093]
gi|297165958|gb|ADI15669.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Truepera radiovictrix DSM 17093]
Length = 437
Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 79/432 (18%), Positives = 150/432 (34%), Gaps = 70/432 (16%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPTSISY 77
+ L + +VGGAVRD+L+ +V+D+D P+ + + +
Sbjct: 9 FTPLPRAGF---LVGGAVRDTLLGRAVRDLDWLVP-DPEEAAAAAAAALGTRAFALDATR 64
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
G ++ D L D +A+ RDF NAL AD G ++D
Sbjct: 65 GHWRVAAGGVTRDYAPL---------------GTDLEANLRARDFCANALAADLSGALVD 109
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK----NIDSDGLVASIKA 193
GG DLR + ++ + A+ + D LR LR R A G + G + A
Sbjct: 110 PTGGRGDLRAKRLRMVDAAN--LWADPLRGLRGARLAAELGFDLEAETAAAIGEHSGAVA 167
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---------ISLD 244
+ + ++ER+ E+++LL ++ ++ G+ + +++ LD
Sbjct: 168 RGEVPPPAAERVGVELSRLLLSERAGPGAALLHRLGLLRAYLPELERAAGVAQGGFHHLD 227
Query: 245 QLSQVIEAEQVF---EWKIDSLLRFIVLISWQDKKSILSM-------------------- 281
L+ +EA + D LR+ L+ K
Sbjct: 228 VLAHSLEALNQLTQGFPEADLALRWATLLHDVGKPDTKRYGPSGRFHFYGHDTLGAEMTK 287
Query: 282 --AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
K+ LP + + + E ++ + ++ LK+ +A
Sbjct: 288 DVLKRLRLPSATVERASALVRRHMLPIPKTAREARRFVHR-RRALLPDLLKLMIADREAA 346
Query: 340 LTHQDTCFILQVLS-------DIIHWKKPLFP-LTGDDVVK-YGIPPGKKVGNILVHCKQ 390
+ + +I+ P P L G V++ +PPG +VG + ++
Sbjct: 347 RGPLASEANRRSYRIALSKVLEILAEPPPKAPLLDGRAVMRLLELPPGPRVGEAVRFVRE 406
Query: 391 EWINSSFQLSQE 402
+E
Sbjct: 407 AEAVGDVSTPEE 418
>gi|91789755|ref|YP_550707.1| metal dependent phosphohydrolase [Polaromonas sp. JS666]
gi|91698980|gb|ABE45809.1| metal dependent phosphohydrolase [Polaromonas sp. JS666]
Length = 462
Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 57/386 (14%), Positives = 113/386 (29%), Gaps = 59/386 (15%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD+LM L+VQD D P+ ++ P + + +
Sbjct: 2 QIYMVGGAVRDALMGLAVQDHDWVVVGATPEDLVA------QGYQPVGKDF--PVFLHPE 53
Query: 87 KYFDITTLRSDLITDGRYA----KVVFTRDWKADSLRRDFTINALYADQQGKVID----- 137
+ R++ T Y + D RRD TINA+ A +
Sbjct: 54 TREEYALARTERKTARGYRGFVVHADPGVTLEQDLARRDLTINAIAAPARSTGAAAGAAA 113
Query: 138 ------YVGGLNDLRNRTIKFIGDAHHR----------ILEDYLRILRFFRFFAHYGEKN 181
D + G R ED +RILR RF A + + +
Sbjct: 114 RPGAALNTDFDADFDALIDPYGGQKDIRDKVLRHVTEAFREDPVRILRLARFAARFADFS 173
Query: 182 IDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ + L + L ER+W E+ + L P + + G + +V
Sbjct: 174 VAPETLALMRDMVTEGEVDALVPERVWQELARGLMEDKPSRLFDVLRDCGALHRLLPEVA 233
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK--------------- 284
+ E + ++ + +
Sbjct: 234 RLWGVPQRAEHHPEVDTGVHLMMVMDMAAQLQASLPVRFACLCHDLGKGTTRAPDAGMST 293
Query: 285 --------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336
F + + + + + ++ + + D +A + +
Sbjct: 294 PGEPPPPEFWREKMASDPQLGRHIGHEERSARLLKDVCERLRVPVDCRELADVVAREHGN 353
Query: 337 YNNLTHQDTCFILQVLSDIIHWKKPL 362
+ ++++L ++KP
Sbjct: 354 IHGSAAFGAAAVVRLLERCDAFRKPR 379
>gi|46116880|ref|XP_384458.1| hypothetical protein FG04282.1 [Gibberella zeae PH-1]
Length = 575
Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 65/379 (17%), Positives = 129/379 (34%), Gaps = 44/379 (11%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTIL---------------PDRVMR-------IFSKT 66
GG VRD L+N+ DID+A + PD + + I +
Sbjct: 74 LRWAGGWVRDKLLNIQSHDIDVAINAMTGVPFAQAMCDYCEQPDAMAKHSIGPADIGNLH 133
Query: 67 RYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
P + T + D LR + T+ + + D+ RRD T+N
Sbjct: 134 NVARNPEKSKHLETAMVKMFGLDLDFVNLRKETYTEDSRNPQMEFGTAEEDARRRDATVN 193
Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182
AL+ + +V D+ GGL D+ + I+ + ++D LR+LR RF + +
Sbjct: 194 ALFYNLHDDRVEDFTGGLADMDAKIIRTPLEPFQTFMDDPLRVLRLVRFASRLQFEIEPE 253
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF--LDVQE 240
+ + +S ER+ E K+L+ +P ++ + +F IF + +
Sbjct: 254 TRKFMADPKVLEALRAKISRERVGVEYEKMLKGAHPHQSLELIDELQLFHAIFTDPEHKN 313
Query: 241 ISLDQLSQVIEAEQVFE----------------WKIDSLLRFIVLISWQDKKSILSMAKK 284
+ ++S+ A + D+ F ++
Sbjct: 314 LPTPEISRWSVAYTCLDELLKDQSPTSVAGRLITSEDASSPFYAWNLAALTPWMIVEEPP 373
Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344
+ Y ++ + + +I Y + + ++ K + Y + +
Sbjct: 374 NFRKKPSAYPPVAVVAREGFRAPNRLADIVAASYRHREAILELKEAVCSKAPYIDERDRF 433
Query: 345 TCFILQVLSDIIHWKKPLF 363
I + S WK +
Sbjct: 434 GMAIRKWDSPKDTWKLQVL 452
>gi|259146097|emb|CAY79357.1| Cca1p [Saccharomyces cerevisiae EC1118]
Length = 546
Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 56/281 (19%), Positives = 102/281 (36%), Gaps = 24/281 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVM--------RIFSKTRYKVIPTSI---- 75
I GG VRD L+ D+DIA + ++ + ++K K
Sbjct: 63 LRITGGWVRDKLLGQGSHDLDIAINVMSGEQFATGLNEYLQQHYAKYGAKPHNIHKIDKN 122
Query: 76 ----SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ T D LRS+ + V + D+LRRD T+NAL+ +
Sbjct: 123 PEKSKHLETATTKLFGVEVDFVNLRSEKYIELSRIPKVCFGTPEEDALRRDATLNALFYN 182
Query: 131 QQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG 186
++ GL DL++ ++ A L+D LR+LR RF + +
Sbjct: 183 IHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRFNFTIDPEVMAE 242
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ +S ER+ E+ K+L PL A+ + + IF + S+ +
Sbjct: 243 MGDPQINVAFNSKISRERVGVEMEKILVGPTPLLALQLIQRAHLENVIFFWHNDSSVVKF 302
Query: 247 S--QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ + +++ D++L + + L
Sbjct: 303 NEENCQDMDKINHVYNDNILNSHLKSFIELYPMFLEKLPIL 343
Score = 40.6 bits (93), Expect = 0.43, Method: Composition-based stats.
Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 333 LALHYNNLTHQDTCFILQVLSD---------IIHWKKPLFPLTGDDVVKY-GIPPGKKVG 382
L L + + Q ++ + + + + G + K + PG +G
Sbjct: 454 AFLKIPKLETKKIELLFQNYNEFYSYIFDNNLNNCHELKPIVDGKQMAKLLQMKPGPWLG 513
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
I + ++ + ++L L+ ++
Sbjct: 514 KINNEAIRWQFDNP-TGTDQELITHLKAIL 542
>gi|8698608|gb|AAF78448.1|AF098803_1 tRNA nucleotidyltransferase [Candida glabrata]
Length = 543
Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 60/362 (16%), Positives = 114/362 (31%), Gaps = 39/362 (10%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVM--------RIFSKTRYKVIPTSI---- 75
I GG VRD L+ D+DIA + + F K K
Sbjct: 47 LRITGGWVRDKLLGQGSHDLDIAINIMSGEEFANGLNGYLLEHFDKYGVKPHSIHKIDKN 106
Query: 76 ----SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ T D LRS+ T+ + D+LRRD T+NAL+ +
Sbjct: 107 PEKSKHLETATTKLFDVEVDFVNLRSEEYTEDSRIPTTQFGTPEEDALRRDATLNALFYN 166
Query: 131 QQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS--DG 186
Q ++ G DL++ ++ A L+D LR+LR RF + +
Sbjct: 167 IQQDAVEDFTKRGWQDLQDGVLRTPLPARQTFLDDPLRVLRLIRFASRFNFNIEAGVLKE 226
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + +S ERI E+ K+L NP+ + + + IFL + S+ +
Sbjct: 227 MHDPEINEAFNNKISRERIGVEMEKILVGPNPILGLKLIQRTHLENVIFLWHGDQSVIEY 286
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
+ R + + L I ++ ++
Sbjct: 287 N-----------------RKNWPQTKDVEDIYKKGIFNHHLKNFIHHYKDFLSRYLKLRQ 329
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + ++I + + + ++ + + + K +
Sbjct: 330 AIETKDKSFQQNFLLASILIPMADLKIIRLPKKKLNNTLPVSESIVREGLKFNKASSIVD 389
Query: 367 GD 368
Sbjct: 390 AR 391
>gi|50293743|ref|XP_449283.1| hypothetical protein [Candida glabrata CBS 138]
gi|51704337|sp|Q9P4S5|CCA1_CANGA RecName: Full=CCA tRNA nucleotidyltransferase, mitochondrial;
AltName: Full=CCA-adding enzyme; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyltransferase; AltName: Full=tRNA
nucleotidyltransferase; Flags: Precursor
gi|49528596|emb|CAG62257.1| unnamed protein product [Candida glabrata]
Length = 531
Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 59/305 (19%), Positives = 107/305 (35%), Gaps = 27/305 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVM--------RIFSKTRYKVIPTSI---- 75
I GG VRD L+ D+DIA + + F K K
Sbjct: 47 LRITGGWVRDKLLGQGSHDLDIAINIMSGEEFATGLNGYLLEHFDKYGVKPHSIHKIDKN 106
Query: 76 ----SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ T D LRS+ T+ + D+LRRD T+NAL+ +
Sbjct: 107 PEKSKHLETATTKLFDVEVDFVNLRSEEYTEDSRIPTTQFGTPEEDALRRDATLNALFYN 166
Query: 131 QQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS--DG 186
Q ++ G DL++ ++ A L+D LR+LR RF + +
Sbjct: 167 IQQDAVEDFTKRGWQDLQDGVLRTPLPARQTFLDDPLRVLRLIRFASRFNFNIEAGVLKE 226
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + +S ERI E+ K+L NP+ + + + IFL + S+ +
Sbjct: 227 MHDPEINEAFNNKISRERIGVEMEKILVGPNPILGLKLIQRTHLENVIFLWHGDQSVIEY 286
Query: 247 SQVIE-----AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
++ E +++ I + + ++D S ++ ++ +
Sbjct: 287 NRKNWPQTKDVEDIYKKGIFNHHLKNFIHHYKDFLSRYLKLRQAIETKDKSFQQNFLLAS 346
Query: 302 NFNQK 306
Sbjct: 347 ILIPM 351
>gi|297845288|ref|XP_002890525.1| hypothetical protein ARALYDRAFT_335508 [Arabidopsis lyrata subsp.
lyrata]
gi|297336367|gb|EFH66784.1| hypothetical protein ARALYDRAFT_335508 [Arabidopsis lyrata subsp.
lyrata]
Length = 603
Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 74/386 (19%), Positives = 133/386 (34%), Gaps = 38/386 (9%)
Query: 10 FHDSDLINILSLL------NKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRI 62
D + I L + + + GG VRD L+ DIDIA + +
Sbjct: 85 LTDKE-RKIFDRLLSTLRYCNLDTQLRVAGGWVRDKLLGKESDDIDIAIDNMSGSEFLDK 143
Query: 63 FSK------------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVF 109
F + T + P + T K+ ++ D LRS+ T+ +
Sbjct: 144 FKEYLSSRDEEVQGDTIIERNPDQSKHLETAKMRIYDQWIDFVNLRSEEYTENSRIPTMK 203
Query: 110 TRDWKADSLRRDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRI 167
K D+ RRD TIN+L+ + ++ G++DL++ I A L+D LR+
Sbjct: 204 FGTAKEDAFRRDLTINSLFYNINSGSVEDLTERGIDDLKSGKIVTPLPAKATFLDDPLRV 263
Query: 168 LRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
LR RF A +G + + + + +S ERI +EI+ ++ P++A+ ++
Sbjct: 264 LRAIRFGARFGFTLDDELKEAASSEEVRVALGEKISRERIGNEIDLMISGNGPVSAVTYL 323
Query: 226 YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV--------LISWQDKKS 277
+F +F Q + + SLL+
Sbjct: 324 SELKLFPVVFSLPSSAEPSPSENCGSLSQAYLEAMWSLLQTPWLGNFSAEQRRLGMYAAM 383
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
L K ++ + + F+ K S + + + + A +
Sbjct: 384 FLPFRKTVYKDKKGKSIPVVNHIFKFSMKRKSSDAETVMNIHQTTERFRSLIPSLEAKND 443
Query: 338 NNLTHQDTCFILQVLSDIIHWKKPLF 363
L D + I HWK
Sbjct: 444 VELDELDWAAYI-----IDHWKAITL 464
>gi|167949026|ref|ZP_02536100.1| polyA polymerase [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 127
Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 37 RDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR- 95
RD L+ +D D+AT P++V ++F R + + ++ ++ T R
Sbjct: 2 RDLLLGREPKDFDVATDARPEQVRQVFRNCRL----IGRRFRLAHVHFGREIIEVATFRS 57
Query: 96 --------SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ +G + D+ RRDFTINALY D +
Sbjct: 58 MGDGEQQDQRQVENGMILRDNVYGTIDEDAQRRDFTINALYYDIE 102
>gi|145344288|ref|XP_001416668.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576894|gb|ABO94961.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 525
Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 52/229 (22%), Positives = 87/229 (37%), Gaps = 19/229 (8%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRI----FSKTRYK 69
L+ ++ K + + GG VRD L+ DID+A +L +
Sbjct: 37 LLAVVEHF-KLDVTLRVAGGWVRDKLVGRESDDIDVALDTMLGKEFAEKVNAYLEAQGME 95
Query: 70 VIPTS---------ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
T + R + D+ LRS+ ++ + K D+ RR
Sbjct: 96 TKGIGVIQSNPEQSKHLETATMRVRDVWLDLVNLRSENYSEDSRIPEMQFGTAKDDAFRR 155
Query: 121 DFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
D TINAL+ + K ++ G+ DL ++ L+D LRILR RF A +G
Sbjct: 156 DLTINALFYNINEKKVEDFTERGIEDLSRGVVRTPLPPRTTFLDDPLRILRAVRFAARFG 215
Query: 179 EKNIDSD--GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
+ +S ER E+ +L+ ++P +A+ M
Sbjct: 216 FDVDEEIGASASDPDVQHALKHKVSRERFGKEVLGMLKGRSPADAVALM 264
Score = 42.1 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 9/85 (10%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGI-PPGKKVGNIL 385
+ ++ + + + L W+ P+TG DV+ + G ++ +
Sbjct: 440 RERVAAGVKAAVSKFEAVEQRVASLELNECWET-KPPVTGQDVMAALNMTKGGPELKKWI 498
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRK 410
+ + + +++E+ +++
Sbjct: 499 DKSVEWALENP-NITKEECVEKIKQ 522
>gi|187931052|ref|YP_001891036.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187711961|gb|ACD30258.1| CCA-adding enzyme [Francisella tularensis subsp. mediasiatica
FSC147]
Length = 360
Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 56/313 (17%), Positives = 108/313 (34%), Gaps = 17/313 (5%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
+VGGAVRD L+ ++ +D D + + + K+ I +
Sbjct: 4 YLVGGAVRDMLLGITPKDKDWVVVGATED--EMLANGFIKIAANF-----PVFIHPQTKQ 56
Query: 90 DITTLR----SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ R + G + D RRD TIN++ DQ KVID G DL
Sbjct: 57 EYALARSEKKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVIDPFNGQADL 116
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+NR ++ +ED LR++R RF A N + ++ + +
Sbjct: 117 QNRILRHT---SIAFIEDPLRVVRLARFKAQLCNFNFSIAQEMLALIKELVKTGELNHLT 173
Query: 206 WSEINK--LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
++ + NP + K IF ++ I L + E +
Sbjct: 174 RERLHIEFVKALNNPKIFFTTLKELEALKIIFPNISCI-LPLIPNKSFFENPIYKGSNIN 232
Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
+ + + ++ + + K+ L + L + + + SI + +
Sbjct: 233 EKITLCLLKIPQQQLDDIRKELLLTNKHYKLLKASIAISKILEDRSITAEEIFQLIKNAN 292
Query: 324 VMIAKLKIFLALH 336
++ K +L+
Sbjct: 293 IIRDKNLFAESLN 305
>gi|256823375|ref|YP_003147338.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Kangiella koreensis DSM 16069]
gi|256796914|gb|ACV27570.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Kangiella koreensis DSM 16069]
Length = 411
Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 72/414 (17%), Positives = 140/414 (33%), Gaps = 71/414 (17%)
Query: 28 KSCIVGGAVRDSLMNL-------SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80
+ +VGGAVRD L+ L V P++++ K K P
Sbjct: 2 QIYLVGGAVRDKLLGLDVVDHDHVVV------GATPEQMLAKGYKEVGKDFPVF------ 49
Query: 81 KIICRKKYFDITTLRSDLITDGRYA----KVVFTRDWKADSLRRDFTINALYADQQGKVI 136
+ K + R++ + Y + D +RRD TINA+ D+QG +I
Sbjct: 50 --LHPKTGEEYALARTERKSGKGYKGFSVDFSSDITLEQDLIRRDLTINAMAQDEQGNLI 107
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIK 192
D G DL ++ ++ + ED LR+LR RF A + ++ L+ +
Sbjct: 108 DPHNGQQDLHDKILRHV---SPAFAEDPLRVLRVARFAARFAHLGFIVADETFALMQELS 164
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245
LK L+ ER+W+E K L +++P ++ G + ++ +
Sbjct: 165 YGDELKHLTPERVWAETEKALASESPQVYFDVLHQCGALAVLMPEMDCLWGIPNPEKWHP 224
Query: 246 -----LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS-------------------ILSM 281
+ ++ EQ + D +RF + K + I +
Sbjct: 225 EIDTGIHTLMVIEQAAKKTTDLRVRFAAAVHDLGKGATPRDQLPQHRGHEESGVPIIKKL 284
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPE------IKKLFYLYGDKVMIAKLKIFLAL 335
K+ +P+ + + + + K Y + + +
Sbjct: 285 CKRLKIPKVYEQLATQVSRYHLHSHKMFELRPSTVLKMLKGLSAYRNPDFLEAFILTCEA 344
Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
+N + Q + K + +++ G G K+G + +
Sbjct: 345 DFNGRLGNEDKPYPQG-DLLKQSFKVSETIDVQLLIEKGY-EGAKLGEAIDRAR 396
>gi|156049161|ref|XP_001590547.1| hypothetical protein SS1G_08287 [Sclerotinia sclerotiorum 1980]
gi|154692686|gb|EDN92424.1| hypothetical protein SS1G_08287 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 516
Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 68/477 (14%), Positives = 135/477 (28%), Gaps = 93/477 (19%)
Query: 24 KGEDKSCIVGGAVRDSLMNLSVQDIDIATT-------------------------ILPDR 58
+ + + GG VRD L+ + DID A +
Sbjct: 33 EKKVELRWAGGWVRDKLLGIESHDIDTAINVMTGYNFSLKMREYLEDTENLKKHALEAKD 92
Query: 59 VMRIFSKTRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
V +++ P + T + D LR + T+ + + D+
Sbjct: 93 VKKLYK---IAANPEKSKHLETATTNIFQFDVDFVNLRKETYTEDSRNPQMEPGTAEEDA 149
Query: 118 LRRDFTINALYADQQGKVIDYVGGL-NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
LRRD TINAL+ + +++ G D++ + IK + + +D LR+LR RF +
Sbjct: 150 LRRDATINALFYNLHTDIVEDFTGGLADMKAKVIKTPLEPYTTFKDDPLRVLRLIRFASR 209
Query: 177 YGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN--GGIFK 232
+ + + +S ER+ E+ K+L+ NP ++
Sbjct: 210 LDFKIDSESEKFMGNPAIMEALKLKISRERVGVEVEKMLKGNNPWQSLHLFDRLGLYSTI 269
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF------- 285
I + +S E + + S +A
Sbjct: 270 FTDPAADSIPVPDISNWRVVYDCLEEMKSNETPDSIYKSLVRSDDAKYLAWILAALTPWT 329
Query: 286 ------------------------------------------SLPREIRYFLISFFNCNF 303
N ++
Sbjct: 330 AVPPAQASKPGGKTPPPFGALVAREGLKAESKLCSMVAGAFKQYAEITELKDAVLRNDSY 389
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-------DTCFILQVLSDII 356
K ++ + + + G + + L L + + + + L D+
Sbjct: 390 IHKRDTVGMMIRKWESQGGQWKLQVLFALLVEALKLESAEGYQSLFSEWQQFIDHLRDLD 449
Query: 357 HWKKPLF--PLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ P + G + G+ P +G L C + + + E +RK
Sbjct: 450 VMEAPAIRGIIDGKILSKALGVRPDMWMGPALNVCMEWQLRNPNSTDAEAAIEEVRK 506
>gi|153872383|ref|ZP_02001294.1| tRNA nucleotidyl transferase [Beggiatoa sp. PS]
gi|152071151|gb|EDN68706.1| tRNA nucleotidyl transferase [Beggiatoa sp. PS]
Length = 389
Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 59/328 (17%), Positives = 117/328 (35%), Gaps = 18/328 (5%)
Query: 41 MNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI 99
M+ +D D P++++ + + P + + + R++
Sbjct: 1 MDRPNKDKDWVVVGATPEQLLELGYTQVGRDFPVF--------LHPTTHDEYALARTERK 52
Query: 100 TDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGD 155
T Y D RRD TINA+ D QG++ID GL DL+ ++ +
Sbjct: 53 TGRGYTGFSVYAAPDITLTEDLQRRDLTINAMALDSQGQLIDPFNGLADLQAGILRHV-- 110
Query: 156 AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSERIWSEINKLLE 214
+ED +RILR RF A +G + + ++ S G L ER+W E + LE
Sbjct: 111 -SLAFVEDPVRILRVARFAARFGFRIAEETLVLMSEMVNNGEVDALVPERVWQETVRALE 169
Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274
P + N G IF ++ + S E + L+ D
Sbjct: 170 EMQPDKFFDVLRNCGALARIFPEIDRLFGIPQSAKHHPEIDTGKHVMLCLQ-QARHQTDD 228
Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
+++ ++ + + + + + + + +A L
Sbjct: 229 SQTLFAVLTHDLGKGTTPPENWPKHPVHEERSVELVEVLCQRYRVPNQYRDLAILVARYH 288
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPL 362
H + + + +L+ L ++ +++P
Sbjct: 289 THCHRIAELSSDIVLETLQNLDAFRRPQ 316
>gi|89256942|ref|YP_514304.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp.
holarctica LVS]
gi|115315306|ref|YP_764029.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp.
holarctica OSU18]
gi|156503132|ref|YP_001429197.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167010006|ref|ZP_02274937.1| CCA-adding enzyme [Francisella tularensis subsp. holarctica FSC200]
gi|254368207|ref|ZP_04984227.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
holarctica 257]
gi|254369806|ref|ZP_04985816.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
holarctica FSC022]
gi|290954002|ref|ZP_06558623.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp.
holarctica URFT1]
gi|295312621|ref|ZP_06803373.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp.
holarctica URFT1]
gi|89144773|emb|CAJ80108.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
holarctica LVS]
gi|115130205|gb|ABI83392.1| tRNA adenylyltransferase [Francisella tularensis subsp. holarctica
OSU18]
gi|134254017|gb|EBA53111.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
holarctica 257]
gi|156253735|gb|ABU62241.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Francisella tularensis subsp. holarctica FTNF002-00]
gi|157122765|gb|EDO66894.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
holarctica FSC022]
Length = 360
Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 56/313 (17%), Positives = 108/313 (34%), Gaps = 17/313 (5%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
+VGGAVRD L+ ++ +D D + + + K+ I +
Sbjct: 4 YLVGGAVRDMLLGITPKDKDWVVVGATED--EMLANGFIKIAANF-----PVFIHPQTKQ 56
Query: 90 DITTLR----SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ R + G + D RRD TIN++ DQ KVID G DL
Sbjct: 57 EYALARSEKKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVIDPFNGQADL 116
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+NR ++ +ED LR++R RF A N + ++ + +
Sbjct: 117 QNRILRHT---SIAFIEDPLRVVRLARFKAQLSNFNFSIAQEMLALIKELVKTGELNHLT 173
Query: 206 WSEINK--LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
++ + NP + K IF ++ I L + E +
Sbjct: 174 RERLHIEFVKALNNPKIFFTTLKELEALKIIFPNISCI-LPLIPNKFFFENPIYKGSNIN 232
Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
+ + + ++ + + K+ L + L + + + SI + +
Sbjct: 233 EKITLCLLKIPQQQLDDIRKELLLTNKHYKLLKASIAISKILEDRSITAEEIFQLIKNAN 292
Query: 324 VMIAKLKIFLALH 336
++ K +L+
Sbjct: 293 IIRDKNLFAESLN 305
>gi|54113957|gb|AAV29612.1| NT02FT0849 [synthetic construct]
Length = 360
Score = 79.5 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 56/313 (17%), Positives = 108/313 (34%), Gaps = 17/313 (5%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
+VGGAVRD L+ ++ +D D + + + K+ I +
Sbjct: 4 YLVGGAVRDMLLGITPKDKDWVVVGATED--EMLANGFIKIAANF-----PVFIHPQTKQ 56
Query: 90 DITTLR----SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ R + G + D RRD TIN++ DQ KVID G DL
Sbjct: 57 EYALARSEKKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVIDPFNGQADL 116
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+NR ++ +ED LR++R RF A N + ++ + +
Sbjct: 117 QNRILRHT---SIAFIEDPLRVVRLARFKAQLSNFNFSIAQEMLALIKELVKTGELNHLT 173
Query: 206 WSEINK--LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
++ + NP + K IF ++ L + E +
Sbjct: 174 RERLHIEFVKALNNPKIFFTTLKELEALKIIFPNISCF-LPLIPNKSFFENPIYKGSNIN 232
Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
+ + + ++ + + K+F L + L + + + SI + +
Sbjct: 233 EKITLCLLKIPQQQLDDIRKEFLLTNKHYKLLKASIAISKILEDRSITAEEIFQLIKNAN 292
Query: 324 VMIAKLKIFLALH 336
++ K +L+
Sbjct: 293 IIRDKNLFAESLN 305
>gi|126640652|ref|YP_001083636.1| poly(A) polymerase I (PAP) [Acinetobacter baumannii ATCC 17978]
Length = 443
Score = 79.5 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 43/251 (17%), Positives = 102/251 (40%), Gaps = 9/251 (3%)
Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT 100
+ L+ +D D T P ++ +F + + + + ++ ++ T R+
Sbjct: 2 LGLNPKDFDAVTNATPSQIKEVFGRRCRIIG---RRFELAHVYSGRELIEVATFRAPPKK 58
Query: 101 -----DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIG 154
G + + D RRDF+IN LY + ++ D+ ++D++++T++ +G
Sbjct: 59 AVTSASGMILRDNNWGTIEQDFARRDFSINTLYYQPRKGIVLDFCKAIDDVKSKTLRLLG 118
Query: 155 DAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214
D R ED +R+LR RF A K + + ++ + L+ +S R++ E KL
Sbjct: 119 DPVQRFEEDPVRMLRTLRFAAKLNFKIDPAILDIFDVEMTQLLRDVSPHRLYDESQKLFT 178
Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274
+ + + + G++K++F D++ + + + ++
Sbjct: 179 MGHLARVLPMLIDFGVWKQLFADIRPDLTPFIQRAAKNTDQRIQVGKTINPAFFYAVLLW 238
Query: 275 KKSILSMAKKF 285
+ +
Sbjct: 239 QPFLERCDFYL 249
>gi|134301319|ref|YP_001121287.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134049096|gb|ABO46167.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Francisella tularensis subsp. tularensis WY96-3418]
Length = 360
Score = 79.5 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 56/313 (17%), Positives = 108/313 (34%), Gaps = 17/313 (5%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
+VGGAVRD L+ ++ +D D + + + K+ I +
Sbjct: 4 YLVGGAVRDMLLGITPKDKDWVVVGATED--EMLANGFIKIAANF-----PVFIHPQTKQ 56
Query: 90 DITTLR----SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ R + G + D RRD TIN++ DQ KVID G DL
Sbjct: 57 EYALARSEKKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVIDPFNGQADL 116
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+NR ++ +ED LR++R RF A N + ++ + +
Sbjct: 117 QNRILRHT---SIAFIEDPLRVVRLARFKAQLSNFNFSIAQEMLALIKELVKTGELNHLT 173
Query: 206 WSEINK--LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
++ + NP + K IF ++ I L + E +
Sbjct: 174 RERLHIEFVKALNNPKIFFTTLKELEALKIIFPNISCI-LPLIPNKSFFENPIYKGSNIN 232
Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
+ + + ++ + + K+ L + L + + + SI + +
Sbjct: 233 EKITLCLLKIPQQQLDDIRKELLLTNKHYKLLKASIAISKILEDRSITAEEIFQLIKNAN 292
Query: 324 VMIAKLKIFLALH 336
++ K +L+
Sbjct: 293 IIRDKNLFAESLN 305
>gi|327352427|gb|EGE81284.1| Poly(A) polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 640
Score = 79.5 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 62/302 (20%), Positives = 102/302 (33%), Gaps = 36/302 (11%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSK---------------------- 65
GG VRD L+ + DID+A +R +
Sbjct: 149 LRFAGGWVRDKLLGVDSHDIDVAINCITGERFGEGLKEYLDTPGNLEKYKAFHSDPSIID 208
Query: 66 ----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ + P + T D+ LR + TD + + D+LRR
Sbjct: 209 CIKIHKIEKNPEKSKHLETATTKIFGLEVDLVNLRKETYTDDSRNPQIEIGTPEEDALRR 268
Query: 121 DFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
D T+NAL+ + +I+ G DL N+ I+ +D LR+LR RF + G
Sbjct: 269 DATVNALFYNIHTDMIEDFTGKGLQDLENKIIRTPMAPFQTFKDDPLRVLRLIRFASRLG 328
Query: 179 EKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ K ++ ERI E+ K L +PL A+ + G++ IF
Sbjct: 329 YSIDSDTEEAMKIEDIKAALKAKITQERIGVEMEKTLRGPDPLTALQRINRLGLYDTIFA 388
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ ++ + S LL + +K+ + RYF
Sbjct: 389 NHRDNAGVDTSSWERGYNALTL----LLSESTGNIDESQKTREYVRDTLIRDENERYFAW 444
Query: 297 SF 298
Sbjct: 445 FL 446
Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-----LFPLTGDDVV-KYGI 375
D + L + L + ++LS I + P+ G D++ G+
Sbjct: 532 DWRLCFVLAMLLEVMRGQEADHVFHNYEKLLSYIENTNLLDVCSLRSPINGRDIINALGV 591
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
G + + + + + + S+E ++ +LR+
Sbjct: 592 KTGPWMSKAVDMVIEWQLRNPDEASKEAAINEVLRR 627
>gi|315638520|ref|ZP_07893696.1| polyA polymerase family protein [Campylobacter upsaliensis JV21]
gi|315481364|gb|EFU71992.1| polyA polymerase family protein [Campylobacter upsaliensis JV21]
Length = 370
Score = 79.5 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 51/340 (15%), Positives = 102/340 (30%), Gaps = 15/340 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPT 73
L I L ++ +VGG+VRD + L ++D DI I P++ + K
Sbjct: 12 LQFISDFLRPHTQRAYLVGGSVRDYFLGLELRDFDIEVYDISPEKFDLLMQKLGANGY-- 69
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYADQ 131
S+ + + + +D+ R++ + + D + RRDFT+NAL +
Sbjct: 70 GKSF----FVYKFQNYDLALARTENKSAPGHKGFEVQICNDEALAAKRRDFTLNALMINI 125
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ G + I +ED LR+LR F + + +
Sbjct: 126 FSGELLDFYGGFEDLKGGILR-HIDDKSFMEDSLRVLRAVGFVSRFKFYLAPQSLNLMKT 184
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L + K + + + E D ++++
Sbjct: 185 MDISDLSEDRINAELYKFFKGEHLALAYKTLQDLGLEKQLFGV-----EFDDDNFLKLLK 239
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ F L + + K +L ++ + +S
Sbjct: 240 NARKFVKDEALFLYLYLNYFNIKEPFCKKSKLKKTLLSKVSQPFFKKEVSDLELLKISSL 299
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
K + D+ I + K + L+
Sbjct: 300 MPLKSWLGLWDQKRIERAKFLGVYDEKFHSQIQAKTYLKQ 339
>gi|261200423|ref|XP_002626612.1| poly(A) polymerase [Ajellomyces dermatitidis SLH14081]
gi|239593684|gb|EEQ76265.1| poly(A) polymerase [Ajellomyces dermatitidis SLH14081]
Length = 640
Score = 79.5 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 62/302 (20%), Positives = 102/302 (33%), Gaps = 36/302 (11%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSK---------------------- 65
GG VRD L+ + DID+A +R +
Sbjct: 149 LRFAGGWVRDKLLGVDSHDIDVAINCITGERFGEGLKEYLDTPGNLEKYKAFHSDPSIID 208
Query: 66 ----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ + P + T D+ LR + TD + + D+LRR
Sbjct: 209 CIKIHKIEKNPEKSKHLETATTKIFGLEVDLVNLRKETYTDDSRNPQIEIGTPEEDALRR 268
Query: 121 DFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
D T+NAL+ + +I+ G DL N+ I+ +D LR+LR RF + G
Sbjct: 269 DATVNALFYNIHTDMIEDFTGKGLQDLENKIIRTPMAPFQTFKDDPLRVLRLIRFASRLG 328
Query: 179 EKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ K ++ ERI E+ K L +PL A+ + G++ IF
Sbjct: 329 YSIDSDTEEAMKIEDIKAALKAKITQERIGVEMEKTLRGPDPLTALQRINRLGLYDTIFA 388
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ ++ + S LL + +K+ + RYF
Sbjct: 389 NHRDNAGVDTSSWERGYNALTL----LLSESTGNIDESQKTREYVRDTLIRDENERYFAW 444
Query: 297 SF 298
Sbjct: 445 FL 446
Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-----LFPLTGDDVV-KYGI 375
D + L + L + ++LS I + P+ G D++ G+
Sbjct: 532 DWRLCFVLAMLLEVMRGQEADHVFHNYEKLLSYIENTNLLDVCSLRPPINGRDIINALGV 591
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
G + + + + + + S+E ++ +LR+
Sbjct: 592 KTGPWMSKAVDMVIEWQLRNPDEASKEAAINEVLRR 627
>gi|71409152|ref|XP_806937.1| tRNA nucleotidyltransferase [Trypanosoma cruzi strain CL Brener]
gi|70870822|gb|EAN85086.1| tRNA nucleotidyltransferase, putative [Trypanosoma cruzi]
Length = 526
Score = 79.5 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 89/235 (37%), Gaps = 32/235 (13%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI------LPDRVMRIFSK---- 65
I + L + GG VRD+L+ L QDIDIA + R S
Sbjct: 31 RRIFATL-------RVAGGWVRDALLGLHSQDIDIAIESSDLRHVSGELFAREVSAYQEA 83
Query: 66 --------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKA 115
+ +V P + T + + LR D T V
Sbjct: 84 MGMAARTVSVIRVNPELSKHIETATVCVCDTPIEFCALRHDEYTRSNSRIPEVRPATPLE 143
Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
D+LRRDFTINAL+ + +V DY GL DL+ R ++ + +D LR+LR RF
Sbjct: 144 DALRRDFTINALFYNLHTMEVEDYTSGLEDLQRRVLRCPLEPRETFTDDPLRLLRGIRFV 203
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI----NKLLEAKNPLNAIVHM 225
GE D + K L+ ++ + I K+L +P + +
Sbjct: 204 GQLGELGFSLDDSIMRCVNKDLLEKMTVKVSRERIGKELVKMLSGPSPEKCVEIL 258
>gi|56707282|ref|YP_169178.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110669752|ref|YP_666309.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp.
tularensis FSC198]
gi|224456347|ref|ZP_03664820.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254369964|ref|ZP_04985972.1| tRNA adenylyltransferase [Francisella tularensis subsp. tularensis
FSC033]
gi|254874120|ref|ZP_05246830.1| CCA-adding enzyme [Francisella tularensis subsp. tularensis
MA00-2987]
gi|73619773|sp|Q5NIG4|CCA_FRATT RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|122971102|sp|Q14JW7|CCA_FRAT1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|56603774|emb|CAG44741.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320085|emb|CAL08124.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
tularensis FSC198]
gi|151568210|gb|EDN33864.1| tRNA adenylyltransferase [Francisella tularensis subsp. tularensis
FSC033]
gi|254840119|gb|EET18555.1| CCA-adding enzyme [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158401|gb|ADA77792.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp.
tularensis NE061598]
Length = 360
Score = 79.5 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 56/313 (17%), Positives = 108/313 (34%), Gaps = 17/313 (5%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
+VGGAVRD L+ ++ +D D + + + K+ I +
Sbjct: 4 YLVGGAVRDMLLGITPKDKDWVVVGATED--EMLANGFIKIAANF-----PVFIHPQTKQ 56
Query: 90 DITTLR----SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ R + G + D RRD TIN++ DQ KVID G DL
Sbjct: 57 EYALARSEKKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVIDPFNGQADL 116
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+NR ++ +ED LR++R RF A N + ++ + +
Sbjct: 117 QNRILRHT---SIAFIEDPLRVVRLARFKAQLSNFNFSIAQEMLALIKELVKTGELNHLT 173
Query: 206 WSEINK--LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
++ + NP + K IF ++ L + E +
Sbjct: 174 RERLHIEFVKALNNPKIFFTTLKELEALKIIFPNISCF-LPLIPNKSFFENPIYKGSNIN 232
Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
+ + + ++ + + K+F L + L + + + SI + +
Sbjct: 233 EKITLCLLKIPQQQLDDIRKEFLLTNKHYKLLKASIAISKILEDRSITAEEIFQLIKNAN 292
Query: 324 VMIAKLKIFLALH 336
++ K +L+
Sbjct: 293 IIRDKNLFAESLN 305
>gi|323697833|ref|ZP_08109745.1| tRNA cytidylyltransferase [Desulfovibrio sp. ND132]
gi|323457765|gb|EGB13630.1| tRNA cytidylyltransferase [Desulfovibrio desulfuricans ND132]
Length = 381
Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 62/393 (15%), Positives = 121/393 (30%), Gaps = 51/393 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K + GGAVRD L+ + D D + + R F + R ++ +
Sbjct: 2 KVYLAGGAVRDLLLGRPIHDRDYLVMDATREEFRRAFPQAR----EVGRTFPVFLV---- 53
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146
+ + R+D + RD T+NA D+ G+VI + G +DL
Sbjct: 54 DNIEFSFPRAD--------------SLDEELKARDLTVNAQLLDEHGEVIFHPQGFDDLE 99
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK--AKKGLKILSSER 204
R ++ H + +D LR+LR RF A + + + A GL +S++R
Sbjct: 100 ARILRPAS--SHSLADDPLRVLRAARFSAQLPDFTAHQELIEAMRAVGRCGGLAAVSADR 157
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-----------EISLDQLSQVIEAE 253
+ E+ K LE+ P N + + F + + D L+
Sbjct: 158 VVPELRKALESPRPGNFLRLLAEADCLLPWFPEFEKGRTIPAGPLPYHHSDVLAHTCRVM 217
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL-----PREIRYFLISFFNCNFNQKTL 308
++ + + + + + P L + +
Sbjct: 218 DDLAGDPVAVWMGLTHDLGKILTPRERLPRHYGHDLAGVPLAEGAALRLRMPNEYKNAGM 277
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKKPLF 363
YG ++ + + LH + + Q +
Sbjct: 278 KAARWHMTAARYGQLRPGTRVDLLMDLHLSGTLTPLFELVRADHGEQYGDRARKELAAIL 337
Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
P+ + G + G L + + +
Sbjct: 338 PVR---LAPEDRNHGAESGEKLRMLRAQVLRGG 367
>gi|78358006|ref|YP_389455.1| HD domain-containing protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78220411|gb|ABB39760.1| HD domain protein [Desulfovibrio desulfuricans subsp. desulfuricans
str. G20]
Length = 440
Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 51/445 (11%), Positives = 141/445 (31%), Gaps = 54/445 (12%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDS-----LMNLSVQDIDIATTILPDRV 59
+ + D I I + + + +V ++ +++ +IDIA +
Sbjct: 1 MTQPF---KDAIGICKAIMRNGYDAYVV-----NTQLQSEILDQDCLEIDIACEPGYVEL 52
Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+IF + F +D + T
Sbjct: 53 GKIFPGLEMS----GEDGVVGTLREGGTLFRFYHTDTDDSSHPEATLARVTPTMLRRLEA 108
Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
+ +L + G +D I+F G + Y+ +R R A++
Sbjct: 109 KGTLPASLACPFIPSSAETYQGFDDFSKGDIRFEGVPDETLRRSYVLGVRAMRIAANFD- 167
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
I+ + +A +++ + + + +EA+N + M++ + + ++
Sbjct: 168 LPIEPNSWMAIVRSASRILDYVPVTEIMDEWRKVEAENMYKFVQLMFDSMLLHGLIPELA 227
Query: 240 EISLDQLSQVIEA--EQVFEWKIDSLLRFIVLISWQDKKSILSMAKK--------FSLPR 289
+S + + EA E V + I+ + R+ + + ++ +M + +
Sbjct: 228 ALSRIRHLRTPEAGEETVLDHTIECMRRYPEELPFDWLGTVATMFHDVGKLYAAEYYNGK 287
Query: 290 EI--------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK-----VMIAKLK 330
+ F + + + + ++ DK + +
Sbjct: 288 WTFYQHHRIGAKVTRKILRRLHFLPEDVDLICHLVRNHMRFHFMLTDKGIRRFKALDEYP 347
Query: 331 IFLALHYNNLTHQDTCF--ILQVLSDIIHWKKPL----FPLTGDDVVKY-GIPPGKKVGN 383
+ + ++ +D + + + + P L G++++++ G+ PG VG
Sbjct: 348 RLIEMARADIKARDGNYTHFNHNMKYLERAETPEQMLEPLLNGNEIMEFTGLKPGPYVGV 407
Query: 384 ILVHCKQEWINSSFQLSQEDLHHLL 408
I + + +E + ++
Sbjct: 408 IRDALLKAQVTGEVTSMEEAIEYVK 432
>gi|317153392|ref|YP_004121440.1| tRNA cytidylyltransferase [Desulfovibrio aespoeensis Aspo-2]
gi|316943643|gb|ADU62694.1| tRNA cytidylyltransferase [Desulfovibrio aespoeensis Aspo-2]
Length = 370
Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 66/392 (16%), Positives = 127/392 (32%), Gaps = 51/392 (13%)
Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ GGAVRD L+ + D D + T F +R ++
Sbjct: 3 VYLAGGAVRDLLLGRPINDRDYLVTGATRQEFTDRFPNSR----EVGRTFP--------- 49
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
+ L + R + + RD T+NA+ D+ G +I + L+DL +
Sbjct: 50 ---VFLLDGLEFSFPRE------VAVEQELRSRDLTVNAMLLDEDGDLICHPDSLDDLHS 100
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKILSSERI 205
RT++ L D LR+ R RF+A + + + + L L ++R+
Sbjct: 101 RTLRPASR--QSFLSDPLRVFRAARFWAKLPDFTPHDELVETMRLVADTGLLAPLPADRV 158
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQLSQVIEAEQVFEWKI---- 260
E K L+ +P N + + G + F + +E +++ V E
Sbjct: 159 GQETIKALQTASPGNYLRLLGRAGCLEPWFKEFKESMNIPAGPLPYHDTDVLEHTCRVMD 218
Query: 261 ----DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI-------SFFNCNFNQKTLS 309
D + ++ L K S + R + +
Sbjct: 219 SLAGDGMAVWMGLCHDIGKTSTPKDILPSHHDHDQRGADMADTLARRIRLSNAHALAGRK 278
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ Y + K+ + + LH + +T + ++ D HW L
Sbjct: 279 GAQWHMTAARYRELRPGTKVDMLMDLHLSRVT-RQLFRLVAADQDEDHWHLAALDL--RT 335
Query: 370 VVKYGIPP-----GKKVGNILVHCKQEWINSS 396
V+ + G + G L + + +
Sbjct: 336 VLASRLDETQRNLGPESGRRLRELRAQALAGR 367
>gi|308801765|ref|XP_003078196.1| tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase,
putati (ISS) [Ostreococcus tauri]
gi|116056647|emb|CAL52936.1| tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase,
putati (ISS) [Ostreococcus tauri]
Length = 538
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/215 (23%), Positives = 83/215 (38%), Gaps = 18/215 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRI----FSKTRYKVIPTS--------- 74
+ GG VRD L+ DID+A +L +
Sbjct: 66 LRVAGGWVRDKLVGRESDDIDVALDTMLGKEFAEKVNEYLEANGMETKGIGVIQSNPEQS 125
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
T + R + D+ LRS+ ++ + K D+ RRD TIN+L+ + K
Sbjct: 126 KHLETATMRVRDVWLDLVNLRSENYSEDSRIPDMEFGTAKDDAFRRDLTINSLFYNLNEK 185
Query: 135 VIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVAS 190
++ G+ DLR+ ++ L+D LRILR RF A +G +
Sbjct: 186 KVEDFTERGIQDLRDGIVRTPLPPRTTFLDDPLRILRAVRFAARFGFDVDEEIGASASDP 245
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
+S ER E+ +L+ ++P +A+ M
Sbjct: 246 DVQNALKHKVSRERFGKEVVGMLKGRSPADAVALM 280
Score = 43.7 bits (101), Expect = 0.054, Method: Composition-based stats.
Identities = 22/208 (10%), Positives = 60/208 (28%), Gaps = 6/208 (2%)
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
E L + L + + G + V +I + L + +SL
Sbjct: 332 EEHKIWLFLASWLLPYRALESIGAKGKKVPAVSDIVSNALKLRSKDADTAVHIHESLFLA 391
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
L+ ++ + + R ++ S Y
Sbjct: 392 KALLENKEFTRLEGGMALRKMGFTWRLPVLLESLTRVPGMRDSEVPQWAADYAVNPDSAP 451
Query: 327 A--KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGI-PPGKKVG 382
A + ++ + + + + W++ P+TG DV+ + G ++
Sbjct: 452 ADVRERVEAGVRMAVDDFEAVERRITEFNLNACWEQ-KPPVTGQDVMAALNMTKGGPQLK 510
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRK 410
+ + + +++E +++
Sbjct: 511 AWIDKSIEWVLEDP-SITKEACIERIKQ 537
>gi|239607439|gb|EEQ84426.1| poly(A) polymerase [Ajellomyces dermatitidis ER-3]
Length = 545
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 62/302 (20%), Positives = 102/302 (33%), Gaps = 36/302 (11%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSK---------------------- 65
GG VRD L+ + DID+A +R +
Sbjct: 54 LRFAGGWVRDKLLGVDSHDIDVAINCITGERFGEGLKEYLDTPGNLEKYKAFHSDPSIID 113
Query: 66 ----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ + P + T D+ LR + TD + + D+LRR
Sbjct: 114 CIRIHKIEKNPEKSKHLETATTKIFGLEVDLVNLRKETYTDDSRNPQIEIGTPEEDALRR 173
Query: 121 DFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
D T+NAL+ + +I+ G DL N+ I+ +D LR+LR RF + G
Sbjct: 174 DATVNALFYNIHTDMIEDFTGKGLQDLENKIIRTPMAPFQTFKDDPLRVLRLIRFASRLG 233
Query: 179 EKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
I+ K ++ ERI E+ K L +PL A+ + G++ IF
Sbjct: 234 YSIDSDTEEAMKIEDIKAALKAKITQERIGVEMEKTLRGPDPLTALQRINRLGLYDTIFA 293
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ ++ + S LL + +K+ + RYF
Sbjct: 294 NHRDNAGVDTSSWERGYNALTL----LLSESTGNIDESQKTREYVRDTLIRDENERYFAW 349
Query: 297 SF 298
Sbjct: 350 FL 351
Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-----LFPLTGDDVV-KYGI 375
D + L + L + ++LS I + P+ G D++ G+
Sbjct: 437 DWRLCFVLAMLLEVMRGQEADHVFHNYEKLLSYIENTNLLDVCSLRSPINGRDIINALGV 496
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
G + + + + + + S+E ++ +LR+
Sbjct: 497 KTGPWMSKAVDMVIEWQLRNPDEASKEAAINEVLRR 532
>gi|302797611|ref|XP_002980566.1| hypothetical protein SELMODRAFT_113085 [Selaginella moellendorffii]
gi|300151572|gb|EFJ18217.1| hypothetical protein SELMODRAFT_113085 [Selaginella moellendorffii]
Length = 587
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 57/300 (19%), Positives = 108/300 (36%), Gaps = 27/300 (9%)
Query: 12 DSDLINILSLL---NKG---EDKSCIVGGAVRDSLMNLSVQDIDIAT-TILP----DRVM 60
++ I L + + + GG VRD L+ DIDIA +L ++V
Sbjct: 59 SAEEEKIFDRLLAVERHFGLGTQLRVAGGWVRDKLLGKDCYDIDIALDNMLGRDFCEKVN 118
Query: 61 RIFSKTRYKVIPTS---------ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFT 110
+ T ++ + D LR++ D R +
Sbjct: 119 EYLKSIGEETKNVGVILSNPDQSKHLETARMKIEDVWVDFVNLRAETYADDSRIPSTMEF 178
Query: 111 RDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR----TIKFIGDAHHRILEDYLR 166
K D+ RRD TIN+L+ + ++ I + H L+D LR
Sbjct: 179 GTPKQDAERRDLTINSLFYNINTGHVEDHTDRGKCLRDLKVGVIATPLEPHVTFLDDPLR 238
Query: 167 ILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224
+LR RF + +G ++ + +S ERI E+ +L +P A+
Sbjct: 239 VLRSVRFASRFGFELEDDLRAAASTGEVRDALERKISRERIGHEVELMLLGNDPTQAMEL 298
Query: 225 MYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284
+ + +F+ +F + +D ++ W + L+ + +S + K + A+
Sbjct: 299 LLDLKLFRSVFTPPAPLLVDGWERLCVQHIHAAWDVLQLVNVNLTVSSINFKQLNWQAEH 358
>gi|302891489|ref|XP_003044626.1| hypothetical protein NECHADRAFT_94217 [Nectria haematococca mpVI
77-13-4]
gi|256725551|gb|EEU38913.1| hypothetical protein NECHADRAFT_94217 [Nectria haematococca mpVI
77-13-4]
Length = 569
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 63/364 (17%), Positives = 120/364 (32%), Gaps = 33/364 (9%)
Query: 15 LINILSLLNKGEDK-----SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMR------- 61
L+++ +++ GG VRD L+N+ DID+A +
Sbjct: 61 LLDVAKSIDEAGTAPEPIVLRWAGGWVRDKLLNIQSHDIDVAINAMTGVPFAQHMCDYCE 120
Query: 62 ---IFSKTRYKVIPTSISY------------GTIKIICRKKYFDITTLRSDLITDGRYAK 106
+K + T + D LR + T+
Sbjct: 121 QPDAIAKHGIGPDDIGSLHNVARNPEKSKHLETAMVKIFGLDLDFVNLRKETYTEDSRNP 180
Query: 107 VVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165
+ + D+ RRD T+NAL+ + ++ D+ GGL+D+ ++ IK + ++D L
Sbjct: 181 QMEFGTAEEDARRRDATVNALFYNLHDDRIEDFTGGLSDMDSKIIKTPLEPFQTFMDDPL 240
Query: 166 RILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223
R+LR RF + + + +S ER+ E+ K+L+ +P ++
Sbjct: 241 RVLRLVRFASRLQFTIDPDTRKFMANPKVLEALRLKISRERVGVELEKMLKGAHPYQSLE 300
Query: 224 HMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK 283
+ +F IF D L +V + LL+ S + A
Sbjct: 301 FIDELQLFPAIFTDPTREDLPVPD--DSRWRVAYSCLQDLLQDQSPSSIASQLVQTDDAT 358
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
+ ++ +K + + + G K I A H +
Sbjct: 359 YTAWNLAAICPWMTVEEPPNFRKKANSLPLVAVVAREGFKAPNKLSDIIAASHRHREEIM 418
Query: 344 DTCF 347
Sbjct: 419 KLKR 422
>gi|33864266|ref|NP_895826.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT
9313]
gi|33641046|emb|CAE22175.1| Poly A polymerase family [Prochlorococcus marinus str. MIT 9313]
Length = 412
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 29/378 (7%)
Query: 31 IVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+ D+D + R +KT GT ++
Sbjct: 44 LVGGAVRDGLLGRLQQQPDLDFIVPNKALEITRSLAKTLG---------GTCVVLD---- 90
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ--GKVIDYVGGLNDLR 146
+ R + + D RRDF +NA+ + +++D GGL+DL
Sbjct: 91 AERDMARLVIKGWTIDIAAQEGSNLDEDLWRRDFRLNAIALTLEATPQLVDPTGGLSDLE 150
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
+ + + + + D L + ++ L + L + ERI
Sbjct: 151 QKKLVAVREQNL---LDDPLRLLRGLRLMAELQLSLGKQTLAWINCHHRLLPQAAPERIQ 207
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
+E+ +++ A + + + LD + +++++S+ +V +
Sbjct: 208 AELQRIVAAPWADDV-----LPLLLRTGLLDCWQNTIERISRPAPCLKVAKSLKPEEQAV 262
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+ ++ R + ++ + +L L ++ +
Sbjct: 263 ALPLARLTHLLSNDGLSALRFSRRQCQRCQLLRHWEERNDGMAFASLSELDRL---QLHL 319
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385
AL ++ + + P P+ G + K +P G+ +G +L
Sbjct: 320 DLETDLPALILQLPHISQVQWLERWRNADDPLFHPSPPVDGYALQKTLKLPKGQALGELL 379
Query: 386 VHCKQEWINSSFQLSQED 403
H QE Q ++
Sbjct: 380 RHLCQEKAFGRVQNRKQA 397
>gi|292669885|ref|ZP_06603311.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541]
gi|292648682|gb|EFF66654.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541]
Length = 410
Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 78/240 (32%), Gaps = 12/240 (5%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR-VMRIFSKTRYKVIPTSISY 77
+ + + VGG VRD N +D+D T + + IF + S+
Sbjct: 8 VRAVRDAGARVFRVGGCVRDRFRNAEAKDVDYVLTGMAEENFCAIFPRAE----KIGKSF 63
Query: 78 GTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ +++ R ++ G + + D RRD T+NA+ + G
Sbjct: 64 PVYHVRIDGSRREVSFARREVKAGTGYRGFAVAFDPSVTIEEDLYRRDTTMNAMALELPG 123
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+V+ G + ED +R LR R A +G + A
Sbjct: 124 EVLLDPYGGRADIAAGVIRA--VSEHFTEDPVRALRAARQAAEFGFMVEERTIAYMRSCA 181
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
+ + + +++ L A+ P + + + F ++ + E
Sbjct: 182 DELQDEPAERLMGE-LHRALAAQRPSSFFRVLQAADLLSVTFPEIAALEGQTQPTDFHPE 240
>gi|294900736|ref|XP_002777091.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239884545|gb|EER08907.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 255
Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 18/168 (10%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATT-----ILPDRVMRIFSKT----------RYKVIPTS 74
GG VRD L+ DIDIA +V ++T + P
Sbjct: 44 RAAGGWVRDKLLGKESDDIDIAVDDMSGEAFAYKVKDFLTRTSPGASCSSVGVVRANPDQ 103
Query: 75 ISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ T + D+ LR++ T VV + D+ RRDFTINAL+ + +
Sbjct: 104 SKHLETATLRVFDISLDVNNLRTETYTLDSRIPVVALGTPQEDASRRDFTINALFYNLRT 163
Query: 134 KVIDYVGGLN--DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
++ G DLR I+ + +D LRILR RF G
Sbjct: 164 ASVEDFTGTGLADLRAGVIRTPLEPTITFQDDPLRILRAVRFSTRLGF 211
>gi|224373272|ref|YP_002607644.1| CCA-adding enzyme [Nautilia profundicola AmH]
gi|223588967|gb|ACM92703.1| CCA-adding enzyme [Nautilia profundicola AmH]
Length = 364
Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 10/218 (4%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYK 69
+ DL + + + + +VGG VRD ++ + ++ DI I P++ + K K
Sbjct: 16 KNDDLEFLKNFFSPFTSRVYLVGGCVRDEILGIKSKEFDIEVYDITPEKFDILMQKLGAK 75
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVF--TRDWKADSLRRDFTINAL 127
S+ + + K FDI+ R++ + T+D K S RRDFT+NAL
Sbjct: 76 --GVGKSF----FVYKWKNFDISLPRTETKIAKGHKGFEVSLTQDEKTASKRRDFTMNAL 129
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ I G + N I ED LR+LR +F + K
Sbjct: 130 MKNIYTGKILDFWGGINDINNKIIK-HIDDISFAEDPLRVLRAMQFASRLKFKIERKTIE 188
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
+ L + ++ K + +
Sbjct: 189 LCKTLDLNELSRERIFMEFEKMFKSRFLYYGFYYFIVL 226
>gi|118498171|ref|YP_899221.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp. novicida
U112]
gi|194324344|ref|ZP_03058117.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Francisella tularensis subsp. novicida FTE]
gi|208780188|ref|ZP_03247530.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Francisella novicida FTG]
gi|166233854|sp|A0Q8A2|CCA_FRATN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA
nucleotidyltransferase; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyl-/cytidylyl- transferase; AltName: Full=tRNA
nucleotidyltransferase; AltName: Full=tRNA-NT
gi|118424077|gb|ABK90467.1| tRNA nucleotidyl transferase [Francisella novicida U112]
gi|194321409|gb|EDX18894.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Francisella tularensis subsp. novicida FTE]
gi|208743837|gb|EDZ90139.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Francisella novicida FTG]
Length = 369
Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/220 (21%), Positives = 79/220 (35%), Gaps = 16/220 (7%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
+VGGAVRD L+ ++ +D D + + + K+ I +
Sbjct: 4 YLVGGAVRDMLLGITPKDKDWVVVGATED--EMLANGFIKIAANF-----PVFIHPQTKQ 56
Query: 90 DITTLR----SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ R + G + D RRD TIN++ DQ KVID G DL
Sbjct: 57 EYALARSEKKTANGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVIDPFNGQADL 116
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+NR ++ +ED LR++R RF A N ++ + +
Sbjct: 117 QNRILRHT---SIAFIEDPLRVVRLARFKAQLSNFNFSIAEETLTLIKELIKTGELNHLT 173
Query: 206 WSEINK--LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
++ + NP + K IF ++ I L
Sbjct: 174 RERLHIEFVKALNNPKIFFTTLEELEALKIIFPNISCILL 213
>gi|281202997|gb|EFA77198.1| tRNA nucleotidyltransferase [Polysphondylium pallidum PN500]
Length = 595
Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 66/346 (19%), Positives = 119/346 (34%), Gaps = 31/346 (8%)
Query: 16 INILSLL------NKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRI----FS 64
+ L K + GG VRD L DIDIA ++ + +
Sbjct: 90 QQLFQTLLQVVEQTKCGTVLRVAGGWVRDKLRGDHSSDIDIALDNMMGEAFASLVNQYLK 149
Query: 65 KTRYKVIPTS---------ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115
+ + T + + D LRS+ +D + +
Sbjct: 150 DHKQETHRIGVIQSNPAQSKHLETATVRIYDMWIDFVNLRSETYSDHSRIPEITIGTPEQ 209
Query: 116 DSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
D+ RRD TIN+L+ + I+ G++DL+ ++ L+D LR+LR RF
Sbjct: 210 DAYRRDLTINSLFYNINENKIEDFTGNGVDDLKCGIVRTPLPPQTTFLDDPLRVLRSIRF 269
Query: 174 FAHYGEKNIDS--DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231
+ +S +S ER+ E++ +L P AI + + G+F
Sbjct: 270 ATRLYYAIDHKLVEAASSSTVKDALASKVSHERVGIELDGMLSGPRPDLAIHLINHFGLF 329
Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291
IF + +++ + + +++L + ISW L K L +
Sbjct: 330 DHIFSLPEGVTIKE-------KNYQYIAAENILNMMRFISWGSTTEELPTRKIRLLSSLL 382
Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ F F N+ +I F + +K L +
Sbjct: 383 QVFHNYTFTTKKNRTIPAIQYTIVEFLKFSNKDYDDVLNVLECADR 428
Score = 41.0 bits (94), Expect = 0.34, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 3/135 (2%)
Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
+ L+ A LP+ R + F + F+L+ + +
Sbjct: 458 WRVALANALISELPKYNRSIVYPFQRLENPDGSPVPRSPMHDFHLHSHNPHVHHPPLCED 517
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWI 393
+ + C + + + W L G V++ PG + +L + +
Sbjct: 518 AKKIVSKYDNFCASVASHNLVGIWNTKKL-LDGKQVMELLKKKPGAWLAPVLQEVFEWQL 576
Query: 394 NSSFQLSQEDLHHLL 408
+ +E +
Sbjct: 577 ENPNSN-EEQCKQWV 590
>gi|294657679|ref|XP_459981.2| DEHA2E15576p [Debaryomyces hansenii CBS767]
gi|199432870|emb|CAG88230.2| DEHA2E15576p [Debaryomyces hansenii]
Length = 577
Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/219 (24%), Positives = 83/219 (37%), Gaps = 20/219 (9%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK--------------TRYKVIPT 73
I GG VRD L+ D+DIA + + K P
Sbjct: 74 LRITGGWVRDKLLGNDSNDLDIAINHLSGEEFASRLHSYLDQYHPSLTLKAIHTIKKNPE 133
Query: 74 SISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ T D LRS+ T ++ + D+LRRD T+NAL+ +
Sbjct: 134 KSKHLETCTTKLFGLDIDFVNLRSEEYTTDSRVPIIECGTAEEDALRRDATLNALFYNIN 193
Query: 133 GKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
VI+ G +DLRN ++ L+D LR+LR RF + + +
Sbjct: 194 QGVIEDFTGKGLDDLRNGILRTPLQPLQTFLDDPLRVLRLIRFASRFNFLVESETLESMT 253
Query: 191 IKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227
K + +S ERI E+ K+L +KNP + +
Sbjct: 254 NDEIKSTLVHKISRERIGVEVEKILTSKNPEYGLHLINY 292
Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 6/61 (9%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 353 SDIIHWKKPLFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
++ + G + + + PG +G I +++ S+++ ++++
Sbjct: 514 QELTEVHIMRPLIDGKTLSKELSMKPGPWMGKINSEILVWQLDNP-SGSKDECISYVKEI 572
Query: 412 I 412
+
Sbjct: 573 L 573
>gi|254373517|ref|ZP_04989004.1| tRNA nucleotidyl transferase [Francisella tularensis subsp.
novicida GA99-3549]
gi|151571242|gb|EDN36896.1| tRNA nucleotidyl transferase [Francisella novicida GA99-3549]
Length = 369
Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 57/313 (18%), Positives = 107/313 (34%), Gaps = 17/313 (5%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
+VGGAVRD L+ ++ +D D + + + K+ I +
Sbjct: 4 YLVGGAVRDMLLGITPKDKDWVVVGATED--EMLANGFIKIAANF-----PVFIHPQTKQ 56
Query: 90 DITTLR----SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ R + G + D RRD TIN++ DQ KVID G DL
Sbjct: 57 EYALARSEKKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVIDPFNGQADL 116
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+NR ++ +ED LR++R RF A N ++ K +
Sbjct: 117 QNRILRHT---SIAFIEDPLRVVRLARFKAQLSNFNFSIAQETLTLIKKLIKTGELNHLT 173
Query: 206 WSEINK--LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
++ + NP + K IF ++ I L + E +
Sbjct: 174 RERLHIEFVKALNNPKIFFTTLKELEALKIIFPNISCI-LLLIPNKSFFENPIYKDSNIN 232
Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
+ + + ++ + + K+ L + L + + + SI + +
Sbjct: 233 EKITLCLLKIPQQQLDDIRKELLLTNKHYKLLKASIAISKILEDRSIAAEEIFQLIKNAN 292
Query: 324 VMIAKLKIFLALH 336
++ K +L+
Sbjct: 293 IIRDKNLFAESLN 305
>gi|15893603|ref|NP_346952.1| PolyA polymerase [Clostridium acetobutylicum ATCC 824]
gi|15023154|gb|AAK78292.1|AE007545_9 PolyA polymerase [Clostridium acetobutylicum ATCC 824]
gi|325507723|gb|ADZ19359.1| PolyA polymerase [Clostridium acetobutylicum EA 2018]
Length = 458
Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 80/455 (17%), Positives = 152/455 (33%), Gaps = 92/455 (20%)
Query: 28 KSCIVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85
++ IVGG +RD LMN D+DIA ++++ K + KV +I
Sbjct: 18 EAYIVGGYIRDKLMNPKNSASDLDIAFQGDFEKILDELRKRKIKVSSIKKDSSVYRITVN 77
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
DI+ + ++ D +RDFT+NA+ D + I
Sbjct: 78 GYCADIS--------------KIKGKNINEDLSKRDFTVNAIALDIKNNKIVDPFDGRVH 123
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
R I + +D +RILR RF+ YG + K K + +R+
Sbjct: 124 IKRRILQV-IDEKSFEDDAVRILRGIRFYIKYGMH-FNGYTEEYIRKHSKNIMKFPRDRV 181
Query: 206 WSEINKLLEAKNPLNAIVHMYNGG------------------------------------ 229
EI ++ M
Sbjct: 182 LDEIIHIIHEDENGVFFEVMDQYMILKNILPYMEELKTVGKCKHHLVDAFTHMNTAYHVF 241
Query: 230 -IFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVL----------------ISW 272
K+ +L V+ I++++ ++ I ++ ++ +
Sbjct: 242 KDMKKKYLKVKNINIEEFNKDIGVYNELDYLAFAIFTHDIGKYVSYKKEGQKISFKGHDE 301
Query: 273 QDKKSILSMAKKFSLPREIR----------YFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
+ + I + + P + + + + F +++ E F Y
Sbjct: 302 KGLEIIEKVCDELKFPNDGKKIVCSVVKNHMYPLMLFKLKEDERKQEEYEFFNKFDQYVP 361
Query: 323 KVMIAKLKIFLA----LHYNNLTHQDTCFILQV---LSDIIHWKKPLFPLTGDDVVKYGI 375
+++A A + NN + T FI ++ + I+ KK + + G+D++ G
Sbjct: 362 HIIVASFCDVYATTIYIDENNEKDRFTSFISELVVKYREFINLKKIKY-IDGNDLIDMGF 420
Query: 376 PPGKKVGNILVHC-KQEWINSSFQLSQEDLHHLLR 409
G +GNIL K +I S + +E +LR
Sbjct: 421 R-GNDIGNILNELNKMLYIEGS-KTKKEQQDFVLR 453
>gi|260887155|ref|ZP_05898418.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185]
gi|330839075|ref|YP_004413655.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Selenomonas sputigena ATCC 35185]
gi|260863217|gb|EEX77717.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185]
gi|329746839|gb|AEC00196.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Selenomonas sputigena ATCC 35185]
Length = 408
Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/401 (14%), Positives = 118/401 (29%), Gaps = 43/401 (10%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSKTRYKVIPTSISY 77
+ + +VGG VRD L + +D D T L + +F ++
Sbjct: 7 VKAVEGAGGTVYLVGGWVRDHLRGATPRDKDFVITGLEREAFAELFPAASL----IGHAF 62
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQG 133
+ +++ R + + Y + D RRD IN++
Sbjct: 63 PVYLVEIDGVRSEVSFARRERKSGHGYRGFAVDFGAEVTIEDDLFRRDTRINSMAYRLPA 122
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+ + H ED +R LR R A G I+
Sbjct: 123 MELIDPYSGRSDLAHCVIRA--TSHHFSEDPVRALRAARQAAELGFV-IEDGTRTLMADC 179
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
L+ +ERI E+++ L A P + + + + +F ++ + E
Sbjct: 180 ATELEEEPTERIVHELSRALAAPQPSLFFEALAHASLLESVFPEIFALKGKTQPPQYHPE 239
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN---------FN 304
++ + + + ++ + L + +N
Sbjct: 240 GDAYCHTMQIVDVVARKTQTIEARFAALVHDIGKGKTPEEMLPHHYGHEQRGLLVLDAWN 299
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLK--------IFLALHYNNLTHQDTCFILQVLSDII 356
++ Y + M A L + LA+ + L+ D I+
Sbjct: 300 KRMTLPKSWLMAAYFVIKEHMRAPLLKKTGKIADLLLAVEKSGLSFADFRRII----CAD 355
Query: 357 HWKKPLFPLTGDDVVKYGIP----------PGKKVGNILVH 387
H P + G+++++ + G VG L
Sbjct: 356 HGTLPYHLVHGEELLRKMLQVRGTEAPPELRGADVGKWLRE 396
>gi|300853360|ref|YP_003778344.1| tRNA nucleotidyltransferase [Clostridium ljungdahlii DSM 13528]
gi|300433475|gb|ADK13242.1| tRNA nucleotidyltransferase [Clostridium ljungdahlii DSM 13528]
Length = 466
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/228 (24%), Positives = 94/228 (41%), Gaps = 22/228 (9%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+++K + +VGG +RD L++++ +DID ++ M +YK P
Sbjct: 13 EVISKVGGEVYLVGGYIRDRLISITAQPKDIDFIFNGNIEKFMEELENRQYKFFPIKQEI 72
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD---QQGK 134
G + + DI+ + + D +RDFT+NA+ + K
Sbjct: 73 GIYRCMLGNNSIDISL--------------MEGDSIEEDLKKRDFTMNAIAIKLSGDKVK 118
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
VID G + NR IK + + D +RILR RF YG + D K
Sbjct: 119 VIDPFYGRRSIDNRIIKSV--TDMSLENDPIRILRGIRFCISYGMH-FNLDTEKCIEKLC 175
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ + ER++ E +LE + A + N GI K I ++E+
Sbjct: 176 YKIMDMPMERVFKEFMLILERDDYGKAFEVLDNYGILKNIIPYIEELK 223
>gi|86152051|ref|ZP_01070263.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni
260.94]
gi|86153538|ref|ZP_01071742.1| CCA-adding enzyme [Campylobacter jejuni subsp. jejuni HB93-13]
gi|85840836|gb|EAQ58086.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni
260.94]
gi|85843264|gb|EAQ60475.1| CCA-adding enzyme [Campylobacter jejuni subsp. jejuni HB93-13]
Length = 345
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 63/388 (16%), Positives = 120/388 (30%), Gaps = 48/388 (12%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGG+VRD + L + D DI I P +I K + S+ + + K
Sbjct: 2 YLVGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKLGAQGF--GKSF----FVYKFKN 55
Query: 89 FDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDL 145
+D+ R++ + D K + RRDFTIN++ + + +D+ GGL DL
Sbjct: 56 YDLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDL 115
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
++ ED LR+LR F + + K + L
Sbjct: 116 GAGFLR--HIDKQSFQEDSLRVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAE 173
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265
+ K + + + + ++ + F L
Sbjct: 174 LCKFFKSPRLDVGYRYLQELGLEKQIFGFESVFMSL---EFQNLLRQSREFVKSDALFLY 230
Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
+ +K +++ + + N F +S E+ K+ + K
Sbjct: 231 LYLNFFNLEKDIFFKRT-------KLKKEYLKYANQAFYLDDISDFELAKIAFEMPLKEW 283
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385
+ L + F ++L D + G GK +G L
Sbjct: 284 LGLWSKKRIEQAKRLGLYENKFESKIL--------------AKDFINAGF-CGKILGLKL 328
Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIA 413
++ +L ++ L
Sbjct: 329 QEARE-----------NELKEYIKGLAK 345
>gi|302406689|ref|XP_003001180.1| tRNA nucleotidyltransferase [Verticillium albo-atrum VaMs.102]
gi|261359687|gb|EEY22115.1| tRNA nucleotidyltransferase [Verticillium albo-atrum VaMs.102]
Length = 594
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/301 (18%), Positives = 104/301 (34%), Gaps = 37/301 (12%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFS----------KTRYKVIPTSISY 77
GG VRD L+ + DID+A + R + + +
Sbjct: 88 LRWAGGWVRDKLLGTTSHDIDVAINVMTGLRFGERLREYCDVPELASRHGIEPDDIGNLH 147
Query: 78 GTI------------KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
+ D LR++ + + + D+LRRD T+N
Sbjct: 148 RIAANPEKSKNLETTTVKVFGLDLDFVNLRTETYAEDSRNPAIDFGTAEEDALRRDATVN 207
Query: 126 ALYADQQGKVIDYVGGL-NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182
AL+ + + ++ G D+R+R I+ + ++D LR+LR RF + G
Sbjct: 208 ALFFNLHTERVEDFTGGLADMRDRLIRTPLEPFQTFMDDPLRVLRLVRFASRLGFAIDPA 267
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
D + +S ER+ E+ K+++ +P A+ + G+ I+ D
Sbjct: 268 ARDVMADPNVLAALRIKISRERVGVELEKMMKGHDPHRALQLIDELGLHHAIYTDTARAD 327
Query: 243 LDQ-----------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291
+ L +++E + D L+R + + L + PR
Sbjct: 328 IPHPMLSKWHIAYGLLRLLERSKAPGSIHDVLVRTDEDVYHSWMLASLVPYAHLTDPRAD 387
Query: 292 R 292
Sbjct: 388 A 388
>gi|77919244|ref|YP_357059.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pelobacter
carbinolicus DSM 2380]
gi|77545327|gb|ABA88889.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pelobacter
carbinolicus DSM 2380]
Length = 438
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 74/429 (17%), Positives = 134/429 (31%), Gaps = 41/429 (9%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
L + LL + +VGGAVRD + D D T P + R F++
Sbjct: 16 PLRELARLLLPNQA-CFLVGGAVRDMFLGRPCSDFDFTTPFDPTPLARAFARNLSASWF- 73
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA--DQ 131
+ +K+ LR AD L RDF INA+
Sbjct: 74 --------FLDQKRRQSRVVLRCGDNDVCCDFSPFRATSLTADLLLRDFRINAMALRVYA 125
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHR-ILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
D+ L+ L + + + + +D LRIL+ R +
Sbjct: 126 DTSPADFFDPLSGLCDLRRRHLSICSGTVLQQDPLRILKGLRHCKVLHLTPGNDTLQKMR 185
Query: 191 IKAKKGLKILSSERIWS----------------------EINKLLEAKNPLNAIVHMYNG 228
A + + + + ++ + A + N
Sbjct: 186 EAAPELPGVAAERVKRELGLLLDDEAVTAALESLLDSGAAASVFKFSRGQVVAAEALRNI 245
Query: 229 GIFKEIFLDVQEISLDQLSQVIEAEQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287
++E LDV E + + + + E + + L V++ K ++ L
Sbjct: 246 QRYQERLLDVAEGNYGEFVRCAMRYKFEECFSRQAALNLTVILKGVPSKVARNVMVALKL 305
Query: 288 PREIRYFLISFFN----CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
R L + + C K L+ +++++ G IFLA
Sbjct: 306 ARNTTRALNGYLDLGEGCLREAKRLTSGSRGRMWWVSGLGPDPVGGLIFLACSEWCPRSA 365
Query: 344 DTCFILQVLSDIIHWKKPLFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402
D +L + D P L G + + PG VGN + ++E + +++
Sbjct: 366 DVQRVLDLALDFASGGPPEDFLDGRWICSNLALKPGPLVGNAIQAVRREEMAGRVLTAEQ 425
Query: 403 DLHHLLRKL 411
LL +
Sbjct: 426 ARQFLLGRY 434
>gi|57167790|ref|ZP_00366930.1| tRNA nucleotidyltransferase [Campylobacter coli RM2228]
gi|305432188|ref|ZP_07401352.1| polyA polymerase family protein [Campylobacter coli JV20]
gi|57020912|gb|EAL57576.1| tRNA nucleotidyltransferase [Campylobacter coli RM2228]
gi|304444731|gb|EFM37380.1| polyA polymerase family protein [Campylobacter coli JV20]
Length = 342
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 60/384 (15%), Positives = 118/384 (30%), Gaps = 48/384 (12%)
Query: 32 VGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90
VGG+VRD + L + D DI I P ++ K + S+ + + K +D
Sbjct: 2 VGGSVRDLFLGLEIYDYDIELYDITPSDFEKMMKKLGAQGF--GKSF----FVYKFKNYD 55
Query: 91 ITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147
R++ T + D K + RRDFTIN++ + + +D+ GGL DL
Sbjct: 56 FALARTENKTGYGHTGFEVQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLEQ 115
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
++ ED LRILR F + + K D + K L
Sbjct: 116 GILR--HIDQTSFQEDSLRILRAVAFASRFDFKIADESLKLMQSMNIKDLSRDRINAELY 173
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267
+ K + + + + + + + ++ + L
Sbjct: 174 KFFKSSKLEVGYKYLQELNMEKEIFGFDSAFKSM---EFQALLRKSREVVKDDALFLYLY 230
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
+ +K+ ++ D + +
Sbjct: 231 LNFFNLNKEEFFK-------------------KSKIKKEYFKKANQAFYLDEMSDFDLAS 271
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
+ L ++ + + K + D + GI GK +G L
Sbjct: 272 IALDMPLKEWLGLWDKERIKWAKKFKLYEN--KFKTSILAKDFLDAGIY-GKMLGLKLKE 328
Query: 388 CKQEWINSSFQLSQEDLHHLLRKL 411
++ +L+ +++L
Sbjct: 329 ARE-----------NELYEYIKRL 341
>gi|149194272|ref|ZP_01871369.1| putative RNA nucleotidyltransferase [Caminibacter mediatlanticus
TB-2]
gi|149135447|gb|EDM23926.1| putative RNA nucleotidyltransferase [Caminibacter mediatlanticus
TB-2]
Length = 352
Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 62/358 (17%), Positives = 119/358 (33%), Gaps = 20/358 (5%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKV 70
+ DL + + + +VGG VRD + ++ + D+ I P + ++ K K
Sbjct: 5 NPDLEFLKNFFAPFTKRVYLVGGCVRDEFLGITPNEFDLEVYDISPQKFDKLMKKLGAK- 63
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALY 128
S+ + + K FDI R + + +D K S RRDFT+NAL
Sbjct: 64 -GVGKSF----FVYKWKNFDIALPRKETKIAKGHRGFEVEIIQDEKLASKRRDFTMNALM 118
Query: 129 ADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ I D+ GG+ D++N+ I+ +ED LR+LR +F + K
Sbjct: 119 ENIYTNEILDFWGGMKDIKNKIIR--HIDDKTFIEDSLRVLRAMQFASRLHFKIHKKTIE 176
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
L + ++ K + + K + L+ + L+
Sbjct: 177 HCKKIDLNDLSKDRIYMEFEKMFKSKFLYYGFYYFIVLDI--AKKLLNLEFNKKEFFHLA 234
Query: 248 QVIEAEQVFEWKIDSLLRFIVLIS------WQDKKSILSMAKKFSLPREIRYFLISFFNC 301
++ + + + + L+ + L + K P+ + +
Sbjct: 235 KLYKNNPIESFFLYHLIYYKNLNHEKVIKALNLPNRLKKEIKIKKCPKLVTNRFLFGLAL 294
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ KT SI + + K + N I +I
Sbjct: 295 KYPLKTFSILNLNCCREWIIKNNLWDKKYKPKHIDPKNPRKSIIKEIRSYDKILIKKA 352
>gi|156098615|ref|XP_001615323.1| tRNA nucleotidyltransferase [Plasmodium vivax SaI-1]
gi|148804197|gb|EDL45596.1| tRNA nucleotidyltransferase, putative [Plasmodium vivax]
Length = 689
Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 22/191 (11%)
Query: 12 DSDLINILSLLNKGEDK------SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFS 64
+ + + L K + +VGG VRD + +S DID+ +
Sbjct: 51 RKEEEELFAFLQKVNETYKLQCTLRVVGGWVRDKFLGISNDDIDLTVDNMKGSEFCNYIK 110
Query: 65 KTRYKVIPTSISYGTIKIICR-------------KKYFDITTLRSDLITDGRYAKVVFTR 111
+ + + ++G IKI D+ LR++ T+ +
Sbjct: 111 EYIQEKEKKNFNFGIIKINSDQSKHLETSSFNLFNFQVDVVNLRNEKYTEDSRIPEIIIG 170
Query: 112 DWKADSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILR 169
+ D+LRRDFT+NAL+ + + ++ G+ L+N+ I D L+D LRI+R
Sbjct: 171 TPEEDALRRDFTVNALFYNLNNRRVEDYTRRGILHLKNKIICTPLDPLSTFLDDPLRIIR 230
Query: 170 FFRFFAHYGEK 180
RF +
Sbjct: 231 CIRFCGVFNFF 241
>gi|150864973|ref|XP_001384007.2| hypothetical protein PICST_31221 [Scheffersomyces stipitis CBS
6054]
gi|149386229|gb|ABN65978.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 559
Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 54/310 (17%), Positives = 102/310 (32%), Gaps = 35/310 (11%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK--------------TRYKVIP 72
+ I GG VRD L+ DIDIA ++ + K P
Sbjct: 40 ELRITGGWVRDKLLGNHSNDIDIAVNHQSGEQFASNLHEYLRVHNPELHLKAIHTIKKNP 99
Query: 73 TSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+ T D LRS+ +D ++ + D+ RRD T+N+L+ +
Sbjct: 100 EKSKHLETCTTKLFGMDIDFVNLRSEEYSDDSRVPIIKFGTPEEDAYRRDATLNSLFFNL 159
Query: 132 QGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGL 187
I+ G DL++ ++ + L+D LR+LR RF + + + + +
Sbjct: 160 NKNEIEDFTGKGLQDLQDGVLRTPLEPLQTFLDDPLRVLRLIRFASRFNFIVEPKTLEAM 219
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ + +S ERI E+ K+ +KNP + + ++ S
Sbjct: 220 TSPEIRESLTTKISKERIEVELLKIFTSKNPSYGLRLINYANLY---------------S 264
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
++ E++ D + + L+ R F +
Sbjct: 265 RIFSTEELVLATPDVVTKLKASCDEISDHVALAATLHPIFVDVERTIQNHFGREFKRLSS 324
Query: 308 LSIPEIKKLF 317
+
Sbjct: 325 IYEYHNPFWL 334
Score = 41.0 bits (94), Expect = 0.32, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 344 DTCFILQVLSD--IIHWKKPLFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLS 400
L+ + D + K + G + + G+ PG V + +++ + +
Sbjct: 467 KYSDFLEYIDDEGLSDADKIKPLIDGTRLTQELGVKPGPWVTLVTEEILVWQLDNPDKGA 526
Query: 401 QEDLHH---LLRKLIASSQ 416
E L + + ++ +A Q
Sbjct: 527 DECLEYIRDIAQRYVAEEQ 545
>gi|57242625|ref|ZP_00370562.1| tRNA nucleotidyltransferase [Campylobacter upsaliensis RM3195]
gi|57016554|gb|EAL53338.1| tRNA nucleotidyltransferase [Campylobacter upsaliensis RM3195]
Length = 370
Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 49/340 (14%), Positives = 101/340 (29%), Gaps = 15/340 (4%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPT 73
L I L ++ +VGG+VRD + L ++D DI I ++ + K
Sbjct: 12 LQFISDFLRPHTQRAYLVGGSVRDYFLGLELRDFDIEVYDISFEKFDLLMQKLGANGY-- 69
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYADQ 131
S+ + + + +D+ R++ + D + RRDFT+NAL +
Sbjct: 70 GKSF----FVYKFQNYDLALARTENKNAPGHKGFEVQICNDEALAAKRRDFTLNALMINI 125
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+ G + + + +ED LR+LR F + + +
Sbjct: 126 FSGELLDFYGGFEDLKKGLLR-HIDDKSFMEDSLRVLRAVGFVSRFKFYLAPQSLNLMKT 184
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251
L + K A+ + + E + D ++++
Sbjct: 185 MDISDLSEDRINAELYKFFKGEHLALAYKALQDLGLEKKLFGM-----EFNDDNFLKLLK 239
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
+ F L + + K L + + ++
Sbjct: 240 NARKFVKDEALFLYLYLNYFNIKEPFCKKTKLKKKLLNQALQPFFKKKISDLELLKIASL 299
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
K + D+ I + K + L+
Sbjct: 300 MPLKSWLGLWDQKRIERAKFLGVYDEKFHSQIQAQTYLKQ 339
>gi|293977824|ref|YP_003543254.1| hypothetical protein DMIN_00950 [Candidatus Sulcia muelleri DMIN]
gi|292667755|gb|ADE35390.1| uncharacterized domain HDIG [Candidatus Sulcia muelleri DMIN]
Length = 442
Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 71/449 (15%), Positives = 135/449 (30%), Gaps = 71/449 (15%)
Query: 16 INILSLL----NKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIF--SKTRY 68
I ++ NK KS +VGG VRD L+ +V + + I T ++ +
Sbjct: 9 KKIFFIIRFYVNKMNKKSYVVGGYVRDFLIGKNVCKKVYIVTVGDCIKLAKKVCEKLDHK 68
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
I +GT I + + R K + DFTIN L
Sbjct: 69 HKINIFKYFGTAIIKYNNLNIEFFSER---------------CSLKEFKKKIDFTINTLA 113
Query: 129 ADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
K+ID GGL D+ IK R+ +R +RF+ F +
Sbjct: 114 ISLNNLNYGKLIDPFGGLFDIMKNKIKSDSYDSLRM----IRAIRFYNEFNFQIDNLSIQ 169
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ SI+ K L +I+ + + +
Sbjct: 170 IMKILSIERILYEFNKILLSNKPSTGIFYFYKIGLLSIILPELINLKGIENKKKFKHKDN 229
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----------------P 288
L + + + + + L + L+ K F
Sbjct: 230 FLHTLEVVDNISIYTNNIWLIWAALLHDIGKSITKKYIPNFGWTFHSHELIGSKMITSIF 289
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL-------KIFLALHYNNLT 341
++ + S I + Y D + L + + + +++T
Sbjct: 290 ERLKLPKKKYIKYVKKIIKYSSRPITLISYTATDSSIRRLLFYIGYDIEDLILMCKSDIT 349
Query: 342 HQDTCFILQVLSDIIHWKKPL-------------FPLTGDDVVK-YGIPPGKKVGNILVH 387
++ +Q + K L ++G ++ +GI P K++G I
Sbjct: 350 TKNYIKKIQYKKNFDLLKLKLKKVEEKDKKKKYPISISGYHIMNIFGINPCKEIGIIKNL 409
Query: 388 CKQEWINSSFQLSQED----LHHLLRKLI 412
K +N + E + + +K++
Sbjct: 410 LKYAIMNGIIPNNFEKANLFILEIGKKIL 438
>gi|254374979|ref|ZP_04990459.1| hypothetical protein FTDG_01161 [Francisella novicida GA99-3548]
gi|151572697|gb|EDN38351.1| hypothetical protein FTDG_01161 [Francisella novicida GA99-3548]
gi|332678899|gb|AEE88028.1| tRNA nucleotidyltransferase [Francisella cf. novicida Fx1]
Length = 369
Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 56/313 (17%), Positives = 106/313 (33%), Gaps = 17/313 (5%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
+VGGAVRD L+ ++ +D D + + + K+ I +
Sbjct: 4 YLVGGAVRDMLLGITPKDKDWVVVGATED--EMLANGFIKIAANF-----PVFIHPQTKQ 56
Query: 90 DITTLR----SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145
+ R + G + D RRD TIN++ DQ KV D G DL
Sbjct: 57 EYALARSEKKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVTDPFNGQADL 116
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
+NR ++ +ED LR++R RF A N ++ K +
Sbjct: 117 QNRILRHT---SIAFIEDPLRVVRLARFKAQLSNFNFSIAQETLTLIKKLIKTGELNHLT 173
Query: 206 WSEINK--LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
++ + NP + K IF ++ I L + E +
Sbjct: 174 RERLHIEFVKALNNPKIFFTTLKELEALKIIFPNISCI-LLLIPNKSFFENPIYKDSNIN 232
Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
+ + + ++ + + K+ L + L + + + SI + +
Sbjct: 233 EKITLCLLKIPQQQLDDIRKELLLTNKHYKLLKASIAISKILEDRSITAEEIFQLIKNAN 292
Query: 324 VMIAKLKIFLALH 336
++ K +L+
Sbjct: 293 IIRDKNLFAESLN 305
>gi|242817430|ref|XP_002486953.1| tRNA nucleotidyltransferase [Talaromyces stipitatus ATCC 10500]
gi|218713418|gb|EED12842.1| tRNA nucleotidyltransferase [Talaromyces stipitatus ATCC 10500]
Length = 617
Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 66/477 (13%), Positives = 136/477 (28%), Gaps = 96/477 (20%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRV--------------------------MR 61
GG VRD L+ ++ DID+A + + +
Sbjct: 133 LRFTGGWVRDKLLGVTSHDIDVAISTMTGLQFGTYLQEYLDDPDNLQKYMDNKELAFTSE 192
Query: 62 IFSKTRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ K P + T+ D+ LR + T+ V + D+LRR
Sbjct: 193 MLKVHTIKANPEKSKHLETVATKLFGLDIDLVNLRKETYTEHSRNPQVEFGTAEEDALRR 252
Query: 121 DFTINALYADQQGKVIDYVG--GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
D T+NAL+ + +++ GL+D+ + I+ + + +D LR+LR RF + G
Sbjct: 253 DATVNALFYNLNTSMLEDFTGLGLDDMERKLIRTPLEPYQTFKDDPLRVLRLIRFASRLG 312
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIW-----SEINKLLEAKNPLNAIVHMYNG----- 228
+ K L + + + + + L I +
Sbjct: 313 YHIDEKTQEAMQNDDIKRAFKLKISKERVGVEVEKTLRAADPRIGLRYIDDLGLYSTIFA 372
Query: 229 GIFKEIFLDVQEISL---------------DQLSQVIEAEQVFEWKIDSLLRFIVLISWQ 273
+ + V SL D+L + + + D V+ ++
Sbjct: 373 NQYDDAEPHVASWSLAYDALDHILSRVLKTDELRHIKRIKNILIRNEDETFYAWVMAAFT 432
Query: 274 DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM-------- 325
++ + + + + I K +V
Sbjct: 433 PWVTVPERVPTSRKQKPPIIARAAEVARDNLRMENKIVNALKDATALFKEVSSLKSSVIS 492
Query: 326 -----------------------IAKLKIFLALHYNNLTHQDTCFILQVLSDIIH-WKKP 361
+L + +A+ + + Q + +K
Sbjct: 493 KDIPGTAAEVRQHVGLQIRSWKKDWRLIVLMAMLQEISAGVEPRKVFQEYDAFLSYLEKE 552
Query: 362 LF-------PL-TGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
P+ G +V +G+P GK + + L + + L+
Sbjct: 553 DLLEVSELRPIANGKEVSTAFGLPDGKWLSSALDMLISWQLLHPHNADKNQALEELK 609
>gi|161833714|ref|YP_001597910.1| tRNA nucleotidyltransferase [Candidatus Sulcia muelleri GWSS]
gi|152206204|gb|ABS30514.1| tRNA nucleotidyltransferase [Candidatus Sulcia muelleri GWSS]
Length = 445
Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 68/449 (15%), Positives = 137/449 (30%), Gaps = 67/449 (14%)
Query: 16 INILSLL----NKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIF--SKTRY 68
I ++ NK KS +VGG VRD L+ +V + + I T ++ +
Sbjct: 9 KKIFFIIRFYVNKMNKKSYVVGGYVRDFLIGKNVCKKVYIVTVGDCIKLAKKVCEKLDHK 68
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
I +GT I + + K + DFTIN L
Sbjct: 69 HKINIFKYFGTAIIKYNNLNIEFFSANKR-------------CSLKEFKKKIDFTINTLA 115
Query: 129 ADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
K+ID GGL D+ IK D++ + R +RF+ F +
Sbjct: 116 ISLNNLNYGKLIDPFGGLFDIMKNKIKSTIDSYDSLRMI--RAIRFYNEFNFQIDNLSIQ 173
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ SI+ K L +I+ + + +
Sbjct: 174 IMKILSIERILYEFNKILLSNKPSTGIFYLYKIGLLSIILPELINLKGIENKKKFKHKDN 233
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----------------P 288
+ + + + + + L + L+ K F
Sbjct: 234 FIHTLEVVDNISIYTNNIWLIWAALLHDIGKSITKKYIPNFGWTFHSHELIGSKMITSIF 293
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI-------AKLKIFLALHYNNLT 341
++ + S I + Y D + ++ + + +++T
Sbjct: 294 ERLKLPKKKYIKYVKKIIKYSSRPITLISYTATDSSIRRLLFYIGDDIEDLILMCKSDIT 353
Query: 342 HQDTCFILQVLSDIIHWKKP-------------LFPLTGDDVVK-YGIPPGKKVGNILVH 387
++ +Q + K + P++GD ++ +GI P +++G I
Sbjct: 354 TKNYIKKIQYKKNFDLLKLKLKKVEEKDKKKKWVSPISGDHIMNIFGINPCQEIGIIKNL 413
Query: 388 CKQEWINSSFQLSQED----LHHLLRKLI 412
K +N + E + + +K++
Sbjct: 414 LKYAIMNGIIPNNFEKANLFILEIGKKIL 442
>gi|34558119|ref|NP_907934.1| RNA nucleotidyltransferase [Wolinella succinogenes DSM 1740]
gi|34483837|emb|CAE10834.1| RNA NUCLEOTIDYLTRANSFERASE [Wolinella succinogenes]
Length = 379
Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 67/388 (17%), Positives = 117/388 (30%), Gaps = 35/388 (9%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDI----ATTILPDRVMRIFSKTRY 68
S +L K VGG+VRD + ++D+D+ T L + +M
Sbjct: 16 SQARELLEFFKPHGAKVYAVGGSVRDFHLRRPLKDLDLEIHQITPALFESLMERLGAKG- 74
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
S+ + + + D++ R + R +V K + RRDFTINA
Sbjct: 75 ----VGKSF----FVYKWQEIDLSLPRLETKTALGHRGFEVKLASSPKEAAKRRDFTINA 126
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
L + + + G D R I ED LR+LR RF + G + D
Sbjct: 127 LMLELESGELFDFFGGMDDLKRRRLHIISP-QTFQEDSLRVLRAARFASELGFRIAPEDI 185
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ L + + + A+ + + Q
Sbjct: 186 PLMRSIEVDDLSKERIYHETKRLLEGAHLPRGVQALQLLALDQKIFHH--PLTPALFHQF 243
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306
++ ++ +L + I+ A L + Q+
Sbjct: 244 LKLQR-----RFRPRTLTHEYAFLLPLYLLWIIRFAPLAHLLESLSAMPKKEQRFLQKQR 298
Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
++ LK +LALH L + + S I
Sbjct: 299 RFPKIIRDSFLVRL---SLLYPLKEWLALHDPTLLQRAKNLGIFDQSFIPSTTPSK---- 351
Query: 367 GDDVVKYGIPPGKKVGNIL-VHCKQEWI 393
++K G GK +G K+E +
Sbjct: 352 ---LLKEGYQ-GKSLGKEWQRRAKEEIL 375
>gi|224135935|ref|XP_002327340.1| predicted protein [Populus trichocarpa]
gi|222835710|gb|EEE74145.1| predicted protein [Populus trichocarpa]
Length = 528
Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 58/276 (21%), Positives = 101/276 (36%), Gaps = 27/276 (9%)
Query: 16 INILSLLNKG------EDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK--- 65
I L + + GG VRD L+ DIDIA +L + +
Sbjct: 27 KQIFDRLVNTLRHFNLNTELRVAGGWVRDKLLGKECCDIDIAIDNMLGSEFVDKVREYLL 86
Query: 66 ------TRYKVIPTS----ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115
VIP + T ++ + D LRS+ ++ + K
Sbjct: 87 STGEEAHGVGVIPRNPDQSKHLETARMRLLDLWIDFVNLRSEDYSENSRIPTMTFGTAKE 146
Query: 116 DSLRRDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
D+ RRD TIN+L+ + ++ G+ DL++ I L+D LR+LR RF
Sbjct: 147 DAYRRDLTINSLFYNINTSSVEDLTGRGIEDLKSGKIVTPLPPKDTFLDDPLRVLRAIRF 206
Query: 174 FAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA---IVHMYNG 228
A +G + + +S ERI +EI+ ++ P+ A I +
Sbjct: 207 GARFGFVLEEELKEAAACDDVKNALKAKISKERIGTEIDLMISGNQPVKAMTYIADLTLF 266
Query: 229 GIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264
+ + V+ ++ + A W + L+
Sbjct: 267 WVVFNLHPKVEPTVSEECQGLCVAYLDAAWNLIHLI 302
>gi|322435119|ref|YP_004217331.1| Polynucleotide adenylyltransferase region [Acidobacterium sp.
MP5ACTX9]
gi|321162846|gb|ADW68551.1| Polynucleotide adenylyltransferase region [Acidobacterium sp.
MP5ACTX9]
Length = 654
Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 52/407 (12%), Positives = 128/407 (31%), Gaps = 11/407 (2%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70
+ L+ + L +VGGAVRD V+D+D+ ++ + K +
Sbjct: 16 QRAALLAVRELAKAKSLTLFLVGGAVRDLTSGSPVRDLDVVVQGNALKLNKDIEKAGGTI 75
Query: 71 IPTSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ S + + +I + S + D RRDFT NA+
Sbjct: 76 VGQSDLGQALFVRFPGSVRMEIGSTLSVTFPKPGKPVHKPATILE-DLRRRDFTANAMAL 134
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGE-KNIDSDG 186
+ + +++ +ED +R++R R+ A G + +
Sbjct: 135 SLNDGSYGLLMDPLNGVADIENRQLRLVSNYGFIEDPIRMVRAARYMARLGWTMDEKTQS 194
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE--IFLDVQEISLD 244
+ + + + L+ E +++ ++PL + + G K + ++++
Sbjct: 195 RYETGQQEGYISALTDFPRGYETEEIVHEEDPLRVLNRLEAEGWMKHLAPYWTAAKVNVA 254
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
+L ++ E + + + K + + F+
Sbjct: 255 ELERLRETQTQLQMQGIHPDPAAANFPLLTAKLTPKELETLKASFPRKGFVTEIEALEAE 314
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
K + KL L + ++ + + + + S W +
Sbjct: 315 SKEFATQLGSKLAVLPSTSWKMISAAPAESVLWTAFSTKSGQLQAKFKSFYTEWPQVRQK 374
Query: 365 LTGDDVVK--YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ +++ + +L E ++ Q + E++ L
Sbjct: 375 I-PYTLMQEMRIVKELPIYEELLEKLFFELMDGHLQ-TPEEMKAFLE 419
>gi|320529712|ref|ZP_08030791.1| putative multifunctional tRNA nucleotidyl transferase [Selenomonas
artemidis F0399]
gi|320138073|gb|EFW29976.1| putative multifunctional tRNA nucleotidyl transferase [Selenomonas
artemidis F0399]
Length = 474
Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 59/432 (13%), Positives = 121/432 (28%), Gaps = 62/432 (14%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISY 77
+ + + VGG VRD+ + D+D T + R +F ++
Sbjct: 26 VEAVRSAGARVFRVGGCVRDAFRGAAAHDMDYVLTGMKETRFCALFPHAE----KIGKAF 81
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQG 133
+ + +++ R ++ T Y T D + D RRD T+NA+ +
Sbjct: 82 PVYHVYIDGRRTEVSFARKEVKTGAGYRGFDVTFDPAVTIEEDLYRRDTTMNAMALELPE 141
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+ + G I ED +R LR R A +G A
Sbjct: 142 ERLVDPYGGRADIAAGIIRA--VSAHFTEDPVRALRAARQAAAFGFAVEAGTLAYMRACA 199
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
++ K + + + + + +P + + F ++ + E
Sbjct: 200 EELQKEPNERLMGE-LRRAIMTPSPSVFFRVLDAAELLDVTFPEIAALKGKTQPVEFHPE 258
Query: 254 -QVFEWKIDSLLRFIVLISW-------------QDKKSILSMAKKFSLPREIRYFLISFF 299
FE + + + + + + L ++
Sbjct: 259 GDAFEHTMSIVDAVAAATDDVTTRFTGLVHDIGKGMTPAEMLPHHYGHEKVGLDVLAAWN 318
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL-----------HYNNLTHQDTCFI 348
T + + KI L + + D +
Sbjct: 319 RRMTLPHTWMKAASFVIREHMRAPRLTHVGKIADLLFGIGRSGLSMEQFTAVIRADHGTL 378
Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPP----GKKVGNILVHCKQEWINSSFQLSQEDL 404
L + + +TG D P G ++G W+ +E+
Sbjct: 379 PDYLMRGAEYLAAMLCVTGRD------APAHLVGAQIG--------AWL-------REER 417
Query: 405 HHLLRKLIASSQ 416
LRK++A +
Sbjct: 418 IRTLRKILAERR 429
>gi|313895212|ref|ZP_07828769.1| putative multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Selenomonas sp. oral taxon 137 str. F0430]
gi|312976107|gb|EFR41565.1| putative multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Selenomonas sp. oral taxon 137 str. F0430]
Length = 474
Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 63/432 (14%), Positives = 133/432 (30%), Gaps = 62/432 (14%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR-VMRIFSKTRYKVIPTSISY 77
+ + + VGG VRD+ + D+D T + +R +F + ++
Sbjct: 26 VEAVRSAGARVFRVGGCVRDAFRGAAAHDMDYVLTGMEERCFCALFPRAE----KIGKAF 81
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQG 133
+ + +++ R ++ T Y D + D RRD T+NA+ +
Sbjct: 82 PVYHVYIDGRRTEVSFARKEVKTGAGYRGFDVMFDPAVTIEEDLYRRDTTMNAMAQELPE 141
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+ + G I +ED +R LR R A +G A
Sbjct: 142 ERLVDPYGGRADIAAGIIRA--VSAHFIEDPVRALRAARQAAAFGFMVEARTLAYMRSCA 199
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
++ K S + + + LE P + + F ++ + E
Sbjct: 200 EELQKEPSERTMGE-LRRALEVSRPSVFFRVLDAAELLDVTFPEIAALKGKTQPVEFHPE 258
Query: 254 -QVFEWKIDSLLRFIVLISW---------QDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
FE + + D + A+ +
Sbjct: 259 GDAFEHTMSIVDAVAAATDDVITRFTGLVHDIGKGETPAEMLPHHYGHEKVGLDVLAAWN 318
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKL-------KIFLALHYNNLTHQDTCFILQ------ 350
+ TL +K ++ + + +L + L + + L+ + +++
Sbjct: 319 RRMTLPHTWMKAASFVIREHMRAPRLTHVGKIADLLLGVGRSGLSMEQFTAVIRADHGTL 378
Query: 351 --VLSDIIHWKKPLFPLTGDDVVKYGIPP----GKKVGNILVHCKQEWINSSFQLSQEDL 404
L+ + + +TG D P G ++G W+ +E+
Sbjct: 379 PDYLTHGAEYLAAMLRVTGRD------APAHLVGAQIG--------AWL-------REER 417
Query: 405 HHLLRKLIASSQ 416
LRK++A +
Sbjct: 418 IRTLRKILAERR 429
>gi|118378166|ref|XP_001022259.1| polyA polymerase family protein [Tetrahymena thermophila]
gi|89304026|gb|EAS02014.1| polyA polymerase family protein [Tetrahymena thermophila SB210]
Length = 516
Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 61/363 (16%), Positives = 125/363 (34%), Gaps = 31/363 (8%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIF--- 63
++ ++ +L GG VRD ++ DIDI + ++ + +
Sbjct: 24 EFVKAKNIQVVLRS----------AGGWVRDKILGQECHDIDITLDTMTGEQFINLLIDY 73
Query: 64 -----------SKTRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR 111
K P + T+ DI LR + T R + F
Sbjct: 74 LKEKGQEDLISGHGVIKSNPDKSKHLETVTFKIFGYDIDIANLRHEEYTKSRIPTMKFGT 133
Query: 112 DWKADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILR 169
+ D+ RRD TIN+++ + I+ G +DL+N+ I+ D ++D LRILR
Sbjct: 134 PLQ-DAERRDLTINSMFYNINTCQIEDFTGKGLSDLQNKIIRTPLDPTQTFIDDPLRILR 192
Query: 170 FFRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227
FRF Y + + + + +S ERI +E+ K+L+ KN + ++
Sbjct: 193 TFRFATKYSFSIVPDIIEALKQEQIRISLEEKVSRERIRTELEKILKDKNVEIGLNLIFQ 252
Query: 228 GGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287
++ +F + + + +Q+ + + + ++
Sbjct: 253 NNLWSIVFQMPDKCDELKDKVFYDQKQLESYNLAIRSVQELKTVQDMPILSQDFQQQDVQ 312
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ + F + +I + + K LK+ +
Sbjct: 313 LLFLMSAISFPFAKIQYKINKTIMSLPQYLAFESLKFPDKALKVCTIITQTCENALKIQE 372
Query: 348 ILQ 350
I++
Sbjct: 373 IIK 375
>gi|326493460|dbj|BAJ85191.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 359
Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 62/268 (23%), Positives = 110/268 (41%), Gaps = 25/268 (9%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIF---------SKTRYKVIPTS- 74
+ + GG VRD L+ DIDIA + + VI +
Sbjct: 96 GTQLRVAGGWVRDKLLGKDSADIDIALDNMTGQNFCERVNEYSKFMGEEQKGIGVIQCNP 155
Query: 75 ---ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
T +++ + D LRS+ + V K D+LRRD TIN+L+ +
Sbjct: 156 DQSKHLETARMLIYDIWIDFVNLRSEKYAENSRIPTVEIGTAKEDALRRDLTINSLFFNI 215
Query: 132 QGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
K+++ + G DL+ I A L+D LR+LR RF A + A
Sbjct: 216 NTKLVEDLTGRGLEDLKKGLIDTPLPAKSTFLDDPLRVLRAIRFAARFSFTLAVDLKEAA 275
Query: 190 SIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
S + K +S ERI E++ ++ K+P+NA+ ++ + G+F +F +++
Sbjct: 276 SDEKVKSELGSKISRERIGHEVDLMMSDKHPVNAMRYIRDLGLFYVVFAFPEKLEPPVFD 335
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDK 275
+ +W + L+ + V + +
Sbjct: 336 K-------HDWYVSILICYCVCLDYMQY 356
>gi|289617254|emb|CBI56021.1| unnamed protein product [Sordaria macrospora]
Length = 602
Score = 76.8 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 27/244 (11%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFS-----------KTRYKVIPTSIS 76
GG VRD L+ DID+A + + +
Sbjct: 113 LRWAGGWVRDKLLGTESHDIDVAINNMTGEAFALRLRDYCDADPAHRERHSIGPQDVGNL 172
Query: 77 YGTI------------KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ I D LR + T+ V + D+LRRD T+
Sbjct: 173 HKIARNPDKSKHLETTTIKLFGLDVDFVNLRKETYTEDSRNPQVEFGTAEEDALRRDATV 232
Query: 125 NALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
NAL+ + ++ G D+ + I+ + ++D LR+LR RF + G +
Sbjct: 233 NALFYNLHTGKVEDFTGGMKDMDRKLIRTPLEPLQTFMDDPLRVLRLIRFASRLGFTIDE 292
Query: 184 SDGLVASIKA--KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
V + + +S ERI E+ K+L+ +PL+++ ++ + ++ +F D
Sbjct: 293 EAKAVMGDERVLEALKLKISRERIGVELEKMLKGPDPLSSLTYINDLNLYHTLFTDSARA 352
Query: 242 SLDQ 245
+
Sbjct: 353 DFPR 356
Score = 41.4 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 343 QDTCFILQVLSDIIHWKKP--LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQL 399
++ L L ++ P + G + K G+ PG +G L + +
Sbjct: 522 KEWQAFLDHLVEMDLMDAPSVKRIIDGKQLAKTLGVKPGVWMGKALEVVMAWQLRNPTVS 581
Query: 400 SQE-DLHHLLRK 410
E + + ++
Sbjct: 582 DPEGAVEEVRKR 593
>gi|242817425|ref|XP_002486952.1| tRNA nucleotidyltransferase [Talaromyces stipitatus ATCC 10500]
gi|218713417|gb|EED12841.1| tRNA nucleotidyltransferase [Talaromyces stipitatus ATCC 10500]
Length = 564
Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 66/477 (13%), Positives = 136/477 (28%), Gaps = 96/477 (20%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRV--------------------------MR 61
GG VRD L+ ++ DID+A + + +
Sbjct: 80 LRFTGGWVRDKLLGVTSHDIDVAISTMTGLQFGTYLQEYLDDPDNLQKYMDNKELAFTSE 139
Query: 62 IFSKTRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ K P + T+ D+ LR + T+ V + D+LRR
Sbjct: 140 MLKVHTIKANPEKSKHLETVATKLFGLDIDLVNLRKETYTEHSRNPQVEFGTAEEDALRR 199
Query: 121 DFTINALYADQQGKVIDYVG--GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
D T+NAL+ + +++ GL+D+ + I+ + + +D LR+LR RF + G
Sbjct: 200 DATVNALFYNLNTSMLEDFTGLGLDDMERKLIRTPLEPYQTFKDDPLRVLRLIRFASRLG 259
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIW-----SEINKLLEAKNPLNAIVHMYNG----- 228
+ K L + + + + + L I +
Sbjct: 260 YHIDEKTQEAMQNDDIKRAFKLKISKERVGVEVEKTLRAADPRIGLRYIDDLGLYSTIFA 319
Query: 229 GIFKEIFLDVQEISL---------------DQLSQVIEAEQVFEWKIDSLLRFIVLISWQ 273
+ + V SL D+L + + + D V+ ++
Sbjct: 320 NQYDDAEPHVASWSLAYDALDHILSRVLKTDELRHIKRIKNILIRNEDETFYAWVMAAFT 379
Query: 274 DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM-------- 325
++ + + + + I K +V
Sbjct: 380 PWVTVPERVPTSRKQKPPIIARAAEVARDNLRMENKIVNALKDATALFKEVSSLKSSVIS 439
Query: 326 -----------------------IAKLKIFLALHYNNLTHQDTCFILQVLSDIIH-WKKP 361
+L + +A+ + + Q + +K
Sbjct: 440 KDIPGTAAEVRQHVGLQIRSWKKDWRLIVLMAMLQEISAGVEPRKVFQEYDAFLSYLEKE 499
Query: 362 LF-------PL-TGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
P+ G +V +G+P GK + + L + + L+
Sbjct: 500 DLLEVSELRPIANGKEVSTAFGLPDGKWLSSALDMLISWQLLHPHNADKNQALEELK 556
>gi|328873083|gb|EGG21450.1| tRNA ADENILYL transferase [Dictyostelium fasciculatum]
Length = 582
Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 67/401 (16%), Positives = 132/401 (32%), Gaps = 39/401 (9%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIAT-TILPDRVMR------------ 61
++L + + + + GG VR+ L+ + DIDIA + ++
Sbjct: 124 RDVLIYFKRQDVQLRVAGGWVRNKLLGIQGGTDIDIAIDNLTGHEFVQMIQKYYSINNQI 183
Query: 62 IFSKTRYKVIPTSISY-GTIK-IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+F K P + T ++ FD T LRS+ + + +DS R
Sbjct: 184 LFRNYIIKSNPEKSKHLETASLVMKDGLTFDFTGLRSEEYDEFSRIPNIVKGTLISDSHR 243
Query: 120 RDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TIN+LY + ++ GL DL N+ ++ + ED LR LR RF +
Sbjct: 244 RDITINSLYYNLMTTRVEDYTLMGLPDLENKIVRTPLSPTLTLCEDPLRALRVLRFSNRF 303
Query: 178 GE---KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
+ ++ GLK+ + ++ K+ + + + G+ I
Sbjct: 304 SFSIESQLYESLCSDRVRDLLGLKVSRERVHTEFTSMMMSYKHAIPYFKTLVDTGLIHSI 363
Query: 235 FL-------DVQEISLDQLSQVIEA-----EQVFEWKIDSLLRFIVLISWQDKKSILSMA 282
F SL L Q +Q + I S + + + +Q+ + +
Sbjct: 364 FPTQGLITTQDWYQSLHYLEQSQHVSNIVPDQSIQEFILSSIFLPLKLKYQNHLDVFKIL 423
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
++I + + S K + D + + + L +
Sbjct: 424 LDLKYSKKICFNVSSTLLSYEILKDPIQLITSRPLEHLIDDNQLFEGSVLPLLKWLRHNQ 483
Query: 343 QDTCFILQVLSDIIHWKKPLFP------LTGDDVVKYGIPP 377
+ P+ + +++ I P
Sbjct: 484 LWKNSLWTARLYFYVNHHPVLSRDDQIWIDAQQIIEKEIMP 524
>gi|225464469|ref|XP_002266551.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|296081108|emb|CBI18302.3| unnamed protein product [Vitis vinifera]
Length = 519
Score = 76.4 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 57/258 (22%), Positives = 99/258 (38%), Gaps = 21/258 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIF---------SKTRYKVIPTS--- 74
+ + GG VRD L+ DIDIA +L K VI +
Sbjct: 39 QLRVAGGWVRDKLLGKECYDIDIALDDMLGREFCEKINDYLSCTGEEKQGIGVIQCNPDQ 98
Query: 75 -ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
T ++ ++ D LRS+ ++ + K D+ RRD TIN+L+ +
Sbjct: 99 SKHLETARMRLFDEWIDFVNLRSEDYSENSRIPTMRFGTAKEDAYRRDLTINSLFYNINT 158
Query: 134 KVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
++ G+ DL++ I L+D LR+LR RF A +G + L A
Sbjct: 159 SSVEDFTGRGIEDLKSGKIVTPLPPKDTFLDDPLRVLRAIRFGARFGFILDEELKLAAGC 218
Query: 192 KAKK--GLKILSSERIWSEINKLLEAKNPLNA---IVHMYNGGIFKEIFLDVQEISLDQL 246
+ +S ERI EI+ ++ P+ A I + + + V+ ++
Sbjct: 219 DDVRAAIADKISRERIGHEIDLMISGNEPVKAMTYICDLLLFSVVFSLPPIVKPAISEEC 278
Query: 247 SQVIEAEQVFEWKIDSLL 264
++ W + L+
Sbjct: 279 DRLCIGYIDAGWNLIQLI 296
>gi|154148647|ref|YP_001406812.1| polyA polymerase family protein [Campylobacter hominis ATCC
BAA-381]
gi|153804656|gb|ABS51663.1| polyA polymerase family protein [Campylobacter hominis ATCC
BAA-381]
Length = 382
Score = 76.4 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 66/414 (15%), Positives = 136/414 (32%), Gaps = 45/414 (10%)
Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLM--NL-SVQDIDIAT-TILPD 57
VS ++ K F S + ++L ++ VGG+VRD + + +DIDI I P+
Sbjct: 3 VSKIELKTFQISGFKTLFNVLKNYTKRAYFVGGSVRDFFLFGGMSKPKDIDIEVYDINPE 62
Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKA 115
+I S+ + + + FDI RS+ + D +
Sbjct: 63 IFEKIM--LGIGAKGVGKSF----FVYKFENFDIALARSENKIGVGHKAFEVEVCNDERM 116
Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
RRDF+INA+ + I G + + +ED LR+LR +F A
Sbjct: 117 AVKRRDFSINAVMINIFTGEICDFYGGVADIRARVLRM-VCEKTFVEDSLRVLRGAQFCA 175
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ K + + L ++ + + + +
Sbjct: 176 RFNLKIEQNTLKIMQKIKLDDLSKDRIRDELVKLFRAKFLAHGFKILQIL---------- 225
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
+D+ ++ KI +L+ I + + + L +
Sbjct: 226 ------GIDEKIFGVKISDKQNKKITGILKNSAKIVQNEMFFLYVILNFLHLDKLKILRS 279
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355
++ + E F L + +K+ + L + L++ +
Sbjct: 280 LNLNSVYKRILNEPFYERVSSFALC---EISSKIPLKSWLGMYSAHRVKMAKSLRIYDNR 336
Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNIL-----VHCKQEWINSSFQLSQEDL 404
+H+K ++G VK G+ G K+ + ++ + + + L
Sbjct: 337 LHFK-----VSGAKFVKIGL-NGIKIATAIKNERSKKIRKHI--NKIKNLKNSL 382
>gi|270680804|ref|ZP_06222760.1| tRNA nucleotidyltransferase [Haemophilus influenzae HK1212]
gi|270316322|gb|EFA28246.1| tRNA nucleotidyltransferase [Haemophilus influenzae HK1212]
Length = 106
Score = 76.4 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 13/113 (11%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTIL-PDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ L V+D D P ++ + + K P + K
Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGTDPATLLSLGYQQVGKDFPVF--------LNPK 53
Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
+ R++ G T + D +RRD TINA+ + G++
Sbjct: 54 TKEEYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEI 106
>gi|164659020|ref|XP_001730635.1| hypothetical protein MGL_2431 [Malassezia globosa CBS 7966]
gi|159104531|gb|EDP43421.1| hypothetical protein MGL_2431 [Malassezia globosa CBS 7966]
Length = 592
Score = 76.4 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 44/213 (20%), Positives = 76/213 (35%), Gaps = 33/213 (15%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVM---------RIFSKTRYKV-IPTSIS 76
++ I GG VRD L+ L D+D++ +++ + FS+T+ I +
Sbjct: 39 EARIAGGWVRDKLLGLPSHDLDVSLSSLTGHQFALFLKAYLESDRFSQTKLAHEIAMHLP 98
Query: 77 YG--------------------TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD 116
+ T D LR ++ V+ D
Sbjct: 99 HRGPMGTIGKIAANPEQSKNLETATTNVLGFDLDFVNLRKEVYEGTHRIPVMSFGTPLDD 158
Query: 117 SLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
++RRD T+NAL+ + I+ GL+DL + ++ D +D LRILR RF
Sbjct: 159 AMRRDITVNALFYNVHTASIEDWTEHGLHDLHHGIVRTPMDPASTFNDDPLRILRCVRFS 218
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
+ +G + A G +
Sbjct: 219 SRFGYEIHSDIRSCLCETASDGGSKAKNPSTAE 251
>gi|156837098|ref|XP_001642583.1| hypothetical protein Kpol_1075p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156113130|gb|EDO14725.1| hypothetical protein Kpol_1075p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 549
Score = 76.0 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 57/238 (23%), Positives = 90/238 (37%), Gaps = 22/238 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFS--------KTRYKVIPTSI--- 75
+ I GG VRD L+ D+DIA + + + + K
Sbjct: 67 ELRITGGWVRDKLLGSESHDLDIAINIMSGENFATKLNDFLQIHYDRYNLKPHSIHKIDK 126
Query: 76 -----SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ T D LRS+ T+ V + D+LRRD T+NAL+
Sbjct: 127 NPEKSKHLETATTKLFDVEVDFVNLRSEEYTENSRIPTVEFGTPEQDALRRDATLNALFY 186
Query: 130 DQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ K ++ G+ DL ++ L+D LR+LR RF + + + DS
Sbjct: 187 NISKKEVEDFTGRGIEDLSAGILRTPLPPRKTFLDDPLRVLRLIRFASRFNFQIEDSVKN 246
Query: 188 VASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
S K +S ERI E+ K+ + K PL + + I IF + S+
Sbjct: 247 AMSDKDINKAFYTKISRERIGVEMEKIFDGKTPLIGLSLIQETCIDNVIFHWHNDQSI 304
Score = 39.8 bits (91), Expect = 0.85, Method: Composition-based stats.
Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVG 382
++ L LA + + + + + G + K + PG +G
Sbjct: 457 HYVSLLNQLLANNEAAMNDYSHFWNFIFEEKLDVCHTLRPMIDGKKMAKILDLKPGPWLG 516
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ + +++ + S+E+L LR+++
Sbjct: 517 KLNEYSVTWQLDNP-EGSEEELLDHLREIL 545
>gi|257458797|ref|ZP_05623920.1| polyA polymerase family protein [Campylobacter gracilis RM3268]
gi|257443785|gb|EEV18905.1| polyA polymerase family protein [Campylobacter gracilis RM3268]
Length = 366
Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 83/393 (21%), Positives = 152/393 (38%), Gaps = 48/393 (12%)
Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDI----ATTILPDRVMRIF 63
K + + D I +L L K + +VGG VRD + + D+D+ +++M+ F
Sbjct: 2 KIYQNDDFIALLDYLKKFSSRIYLVGGCVRDHFLGRASADVDVELYDVGPHRFEQIMQDF 61
Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVF--TRDWKADSLRRD 121
SY + + K FDI+ R++ T + D + S RRD
Sbjct: 62 GAQG-----VGKSY----FVYKYKSFDISLPRTESKTGIGHKGFSVALATDEREASRRRD 112
Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
FTINA+ + GKV+D+ GGL DL R ++ + +ED LR+ R +F A +
Sbjct: 113 FTINAMMINAISGKVLDFYGGLADLHARILRVVDP--RTFVEDSLRVYRAVQFAARF--- 167
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQ 239
+ ++ + + LS ER+ +E+ K A ++ M G+++ +F L +
Sbjct: 168 ELRTEHHTLELMRSIDVSDLSCERVKAELIKFFRAPAHRYGMMLMQELGLYERVFGLRID 227
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
+ ++L + IE + F L + DK IL L S +
Sbjct: 228 TRTHERLIKFIEHGESFVRNEMFFLYAFLNFLGLDKDKILKNL-----------GLNSLY 276
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW- 358
++ ++L + + L ++ +Q + W
Sbjct: 277 KRLLSEPFFKRVSDERLCKIALKMPLKQWLGLYC------------KGRVQAAKRLGIWD 324
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
KK + DV + G +G + ++
Sbjct: 325 KKFKSLVCATDV-ARNLR-GAAIGKEIERLQEA 355
>gi|268680133|ref|YP_003304564.1| polynucleotide adenylyltransferase region [Sulfurospirillum
deleyianum DSM 6946]
gi|268618164|gb|ACZ12529.1| Polynucleotide adenylyltransferase region [Sulfurospirillum
deleyianum DSM 6946]
Length = 375
Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 64/378 (16%), Positives = 131/378 (34%), Gaps = 37/378 (9%)
Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTI 80
L ++ +VGG+VRD ++ + D+DI I P+ + + + S+
Sbjct: 22 LAPYTKRAYLVGGSVRDICVDEPLHDLDIEVYDIAPETFDNLMQR--IGAVGVGKSF--- 76
Query: 81 KIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYADQQ-GKVID 137
+ + D + R + + + D K S RRDFTINA+ + +++D
Sbjct: 77 -FVYKWGNIDFSLPRIERKSGVGHNAFEVEVCEDEKEASKRRDFTINAMMLNIFTYELLD 135
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
+ G + +R + I + ED LR+LR +F A G K + ++
Sbjct: 136 FWDGQKAILDRLLVII--DEEKFKEDSLRVLRAMQFSARLGFK--IESKSLMIMREIALS 191
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
+ +W ++N + ++ L + + E F
Sbjct: 192 DLTKPRILWE--------------FEKLFNASYLHYGLFYMYQLELFEKCFTCKVENHFF 237
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
LLR ++ S + + ++ I + + + F
Sbjct: 238 TIARELLRCKHNF----QEEFASYYFVYIVANRLQQDPIKWLSALDAPNHYRRFFRNQPF 293
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP--LTGDDVVKYGI 375
G+ L + L + + + + W++P F ++ DV+ G
Sbjct: 294 VE-GEINDKTLLHVSLDIPLCEWLGHYREGVKERAIALEIWEQP-FDGGISVHDVMNEGF 351
Query: 376 PPGKKVGNILVHCKQEWI 393
G+ +G+ L + I
Sbjct: 352 -EGRSIGDELRKRRIAKI 368
>gi|237749433|ref|ZP_04579913.1| tRNA nucleotidyltransferase polyA polymerase [Oxalobacter
formigenes OXCC13]
gi|229380795|gb|EEO30886.1| tRNA nucleotidyltransferase polyA polymerase [Oxalobacter
formigenes OXCC13]
Length = 414
Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 56/333 (16%), Positives = 116/333 (34%), Gaps = 19/333 (5%)
Query: 41 MNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI 99
M L V D D + ++ + P + + + + R++
Sbjct: 1 MGLPVHDRDYVVVGSTVEEMLSL------GFTPVGKEF--PVFLHPETKQEYALARTEKK 52
Query: 100 TDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGD 155
Y VF + D LRRD TINA+ ++G++ID GG D+ NR + +
Sbjct: 53 VAPGYRGFVFHASPDVTLEEDLLRRDLTINAMAMSEEGEIIDPFGGRRDIENRVFRHV-- 110
Query: 156 AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLL 213
ED +RILR RF A + + ++ + + K + L ER+W E+++ L
Sbjct: 111 -SEAFAEDPVRILRLARFAARFRDFSVAPETMELMKKMVTDGEVDALVPERVWKELSQGL 169
Query: 214 EAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQ 273
P I M++ G + IF +++ + + E L + +++
Sbjct: 170 MESMPSRMIQIMHDCGALERIFPEIEALWEVPQPEKYHPEIYAGKHTLLALDYSAKMNYP 229
Query: 274 DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333
+ + + + + + ++ IA +
Sbjct: 230 LTVRFSVLLHDLGKG-TTPPNQWPHHRAHEERGASIVDNVCRRLHVSKMLRDIAVMTARE 288
Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ + + + VL +++P +
Sbjct: 289 HGNIRRSSELRSKTAVMVLERCDAFRRPERFID 321
>gi|302828254|ref|XP_002945694.1| hypothetical protein VOLCADRAFT_115637 [Volvox carteri f.
nagariensis]
gi|300268509|gb|EFJ52689.1| hypothetical protein VOLCADRAFT_115637 [Volvox carteri f.
nagariensis]
Length = 220
Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 19/186 (10%)
Query: 18 ILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK--------- 65
+L+ + GG VRD L+ DIDIA +L + ++
Sbjct: 18 LLAAVRHAGADTSLRCAGGWVRDKLLGRDSDDIDIALDNMLGKDFADLVNEYLKSQGREA 77
Query: 66 ---TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ P + T ++ + + D+ LRS+ + + D++RRD
Sbjct: 78 RHAAVIQSNPDQSKHLETARMKIGEMWIDLVNLRSETYAADSRIPSMTFGTPEQDAMRRD 137
Query: 122 FTINALYADQQGKVIDYV---GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
FTINAL+ + + + GL DLR+ I+ L+D LR+LR RF +G
Sbjct: 138 FTINALFYNITQRGVVEDLTGRGLQDLRDGLIRTPLPPRETFLDDPLRVLRAVRFGTRFG 197
Query: 179 EKNIDS 184
+
Sbjct: 198 FRLHPD 203
>gi|302790141|ref|XP_002976838.1| hypothetical protein SELMODRAFT_151539 [Selaginella moellendorffii]
gi|300155316|gb|EFJ21948.1| hypothetical protein SELMODRAFT_151539 [Selaginella moellendorffii]
Length = 562
Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/280 (19%), Positives = 100/280 (35%), Gaps = 27/280 (9%)
Query: 12 DSDLINILSLL---NKG---EDKSCIVGGAVRDSLMNLSVQDIDIAT-TILP----DRVM 60
++ I L + + + GG VRD L+ DIDIA +L ++V
Sbjct: 56 SAEEEKIFDRLLAVERHFGLGTQLRVAGGWVRDKLLGKDCYDIDIALDNMLGRDFCEKVN 115
Query: 61 RIFSKTRYKVIPTS---------ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFT 110
+ T ++ + D LR++ D R +
Sbjct: 116 EYLKSIGEETKSVGVILSNPDQSKHLETARMKIEDVWVDFVNLRAETYADDSRIPSTMEF 175
Query: 111 RDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR----TIKFIGDAHHRILEDYLR 166
K D+ RRD TIN+L+ + ++ I + H L+D LR
Sbjct: 176 GTPKQDAERRDLTINSLFYNINTGHVEDHTDRGKCLRDLKVGVIATPLEPHVTFLDDPLR 235
Query: 167 ILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224
+LR RF + +G ++ + +S ERI E+ +L +P A+
Sbjct: 236 VLRSVRFASRFGFELEDDLRAAASTGEVRDALERKISRERIGHEVELMLLGNDPTQAMEL 295
Query: 225 MYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264
+ + +F+ +F + +D ++ W + L+
Sbjct: 296 LLDLKLFRSVFTPPAPLLVDGWERLCVQHIHAAWDVLQLV 335
>gi|222056388|ref|YP_002538750.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Geobacter sp. FRC-32]
gi|221565677|gb|ACM21649.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Geobacter sp. FRC-32]
Length = 403
Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 69/354 (19%), Positives = 107/354 (30%), Gaps = 41/354 (11%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK- 87
+VGG+VRD L+ +DID+ LPD + I T + T+ I +
Sbjct: 20 IYVVGGSVRDFLLGKESEDIDL-VAALPDET---LRSCGFYPI-TGKT--TVPIWFQCHP 72
Query: 88 ---YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144
+I LR + D RRDFTINA+ G + D + G
Sbjct: 73 ELGKIEIIQLREE--------------SLIEDLRRRDFTINAIAMHLSGMLYDPLDGSRH 118
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
LR ++ + +D LRI R FRF A + S L+ L + ER
Sbjct: 119 LREGLLQAC--TDNTFADDPLRIFRAFRFEADGWQMTTGSKALILGRDWTARLGHIPVER 176
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-------------QEISLDQLSQVIE 251
E+ K L K P M + KE ++ +
Sbjct: 177 FSREMLKALGGKEPGIFFQRMLACRVGKEWLPELFSMTKVPAGPLEHHPEGDLFTHSLQV 236
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
++ D L RF K + E F + S
Sbjct: 237 LQRTAAVTGDPLARFCAFFHDIGKLATGPDLYPRHHGHEEAGFHMGHRLGRRLCLPASYM 296
Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365
+ + ++ + + I +L I KP +
Sbjct: 297 KALSWTSRL-HMHLNKWAELRSSTRIRSAEQAAKAGIASILPVIAGADKPENTI 349
>gi|298242690|ref|ZP_06966497.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Ktedonobacter racemifer DSM 44963]
gi|297555744|gb|EFH89608.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Ktedonobacter racemifer DSM 44963]
Length = 524
Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 56/271 (20%), Positives = 93/271 (34%), Gaps = 25/271 (9%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+ +VGG+VRD L+ D DIA + R + T K
Sbjct: 41 AYLVGGSVRDLLLAQPCHDWDIALPGDTVTIARQLANTLGGAF----------AHMNDKA 90
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-----------QQGKVID 137
IT + D RDFTINA+ Q +++D
Sbjct: 91 CRITIPSPTGPDIVFDLSPWRGETIEEDLHARDFTINAMALALPGLLASLESGTQLELVD 150
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
+ G DL+NRT++ +D LR+LR RF HY + +D + L
Sbjct: 151 PLYGHTDLQNRTLRVAS--EQSFRQDPLRMLRAMRFLVHY-QLRLDPYTATLLKRDASLL 207
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
++ R+ E+ LL N + + + G+F +F + + + VFE
Sbjct: 208 PQVARARVHEELYALLRFPNTTDHLRLLDRYGLFTMLFPEFIQARGMPQPSLHHW-DVFE 266
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288
+++ +L A +
Sbjct: 267 HSLETPRYLQLLDELLHANPTELRASPLTFD 297
Score = 46.0 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP---LTGDDVVK-YGIPPGK 379
+ L + L Q + + I ++ + P L D++++ + PG
Sbjct: 422 ALADHLAMRGPLPLTEAWRQHLAAVRLLCERYIRQRESILPPRMLQADELMRRLDLKPGP 481
Query: 380 KVGNILVHCKQEWINSSFQLSQEDL---HHLLRKL 411
+G +L + + + Q+ L + L++L
Sbjct: 482 IIGKLLEALAEAQADGIVRSRQDALWFTNEKLQEL 516
>gi|261331417|emb|CBH14411.1| tRNA nucleotidyltransferase, putative [Trypanosoma brucei gambiense
DAL972]
Length = 526
Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 87/242 (35%), Gaps = 31/242 (12%)
Query: 16 INILSLLNKGEDK------SCIVGGAVRDSLMNLSVQDIDIATTI------LPDRVMRIF 63
I L + ++ + GG VRDSL+ L QDIDIA + R
Sbjct: 18 EKIFDFLLRVNEERNINATLRVAGGWVRDSLLGLHSQDIDIAIESATTRHVSGELFAREV 77
Query: 64 SKT------------RYKVIPTSISY-GTIKIICRKKYFDITTLRSD-LITDGRYAKVVF 109
+ +V P + T + + LR D VV
Sbjct: 78 ASHQEALGMTARTVSVIRVNPELSKHIETATVCVYDTPIEFCALRHDEYTRSDSRIPVVR 137
Query: 110 TRDWKADSLRRDFTINALYADQQGKVIDYVGGL-NDLRNRTIKFIGDAHHRILEDYLRIL 168
D+LRRD+T+NAL+ + K ++ DL R ++ D + +D LR+L
Sbjct: 138 PATTVEDALRRDYTVNALFYNLHTKEVEDYTTGLEDLDRRILRCPLDPKETLTDDPLRLL 197
Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI----NKLLEAKNPLNAIVH 224
R RF GE D + K+ LK ++ + + K+L I
Sbjct: 198 RGVRFVGQLGELGFVLDESIFRCVDKELLKKVTLKVSRERVGKELVKMLSGPFAEKCIET 257
Query: 225 MY 226
++
Sbjct: 258 LH 259
>gi|315271264|gb|ACO45425.2| putative tRNA nucleotidyltransferase/poly A polymerase family
protein [Deinococcus deserti VCD115]
Length = 433
Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 71/402 (17%), Positives = 128/402 (31%), Gaps = 64/402 (15%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+ +VGGA RD L ++ +D D A ++ +T V P G ++ +
Sbjct: 15 ALLVGGAARDWLRGVAPKDFDWAVPDPAAAAAQLAQETGGAVFPLDEVRGYWRVHAPGEI 74
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148
+ V + AD LRRDFT+NAL +V+D G DLR +
Sbjct: 75 Q--------------HDFVPLPAEVTADLLRRDFTVNALALTADRQVLDPAQGQQDLRTK 120
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI----LSSER 204
++ + + + D LR+ R RF + ++ER
Sbjct: 121 QLRMVSADN--LWADPLRVWRAARFEVTLRFRLEAETERTVREVTTALASGRLSMPAAER 178
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---------ISLDQLSQVIEAEQV 255
I E++ LL N I + + G+ +++E LD +EA
Sbjct: 179 IRDELHALLSHPNSALGIQRLEDLGLLSLTMPELREGRGMLQGGFHHLDVFDHGVEALHQ 238
Query: 256 F---EWKIDSLLRFIVLISWQDKKSILSM-----------------------AKKFSLPR 289
D LR+ L+ K + + LP
Sbjct: 239 LLARRPDADLPLRWATLLHDVGKPRTRATDPDTGRTSFHGHDRLGAELTSAVLTRLKLPA 298
Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI-------AKLKIFLALHYNNLTH 342
+ + + E ++ + + + + +
Sbjct: 299 GDVRRAAALVGAHMVPLPATEREARRFVHRRRELLPDLLSLMLADREAARGPMSSPASRR 358
Query: 343 QDTCFILQVLSDIIHWKKPLFP-LTGDDVVK-YGIPPGKKVG 382
+ +VL+ + P P L+G +V+ PG +VG
Sbjct: 359 AYAQGMDRVLAALEEQPAPPPPLLSGQEVMALLNTGPGPRVG 400
>gi|224419020|ref|ZP_03657026.1| tRNA nucleotidyl transferase [Helicobacter canadensis MIT 98-5491]
gi|253827965|ref|ZP_04870850.1| tRNA nucleotidyl transferase [Helicobacter canadensis MIT 98-5491]
gi|313142532|ref|ZP_07804725.1| tRNA nucleotidyl transferase [Helicobacter canadensis MIT 98-5491]
gi|253511371|gb|EES90030.1| tRNA nucleotidyl transferase [Helicobacter canadensis MIT 98-5491]
gi|313131563|gb|EFR49180.1| tRNA nucleotidyl transferase [Helicobacter canadensis MIT 98-5491]
Length = 417
Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 73/375 (19%), Positives = 128/375 (34%), Gaps = 53/375 (14%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGA+RD L+ L +D D + + ++ I
Sbjct: 9 KIYLVGGAIRDYLLGLPTKDKDYVAVGFSE-------NDFQRYQKVGKNFPVFLI---DS 58
Query: 88 YFDITTLRSDLITDGRYAKVVF---TRDWKADSLRRDFTINALYADQQGKV-IDYVGGLN 143
+ I R + T Y + D RRD +INA+ D ID G
Sbjct: 59 HTQIALARKETKTTKGYNGFSYKTDNVTLLEDLKRRDLSINAMALDLNSNTLIDPFNGKK 118
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSS 202
DL+N+ ++ ED LRILR RF A G I V K+ LK L
Sbjct: 119 DLQNKILRHT---SPAFCEDPLRILRLARFKAKLGIHWKIHPSTKVLVHSMKEELKTLEP 175
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
R++ EI ++L KN ++ G+ KEIF + +++ + E
Sbjct: 176 NRVFEEIKQVLSQKNSHLFFETLFELGVLKEIFPSIYALTILKEYNPNHLESSVFVHTME 235
Query: 263 LLRFIVLISWQDKKSILSM-------------------------AKKFSLPREIRYFLIS 297
+L+ + S K + L +P+ I+ ++
Sbjct: 236 VLKRLDNDSLLLKLTALYHNIAKPYTYRNSKNPNEYDNPKKVESLIDMQIPKTIQKKMLI 295
Query: 298 FFNCNFNQKTLSIPEIKKLFYLY-----GDKVMIAKLKIFLA-----LHYNNLTHQDTCF 347
+ L K+ + +++ +++ F A + T ++
Sbjct: 296 LIGNHIKITHLFAMHPSKILDFFHSFKGDKTLLLDQIRFFEADYKRCISQAQYTTLESKK 355
Query: 348 ILQVLSDIIHWKKPL 362
I+++ S I +
Sbjct: 356 IIELFSQINSYSPKE 370
>gi|299136798|ref|ZP_07029981.1| Polynucleotide adenylyltransferase region [Acidobacterium sp.
MP5ACTX8]
gi|298601313|gb|EFI57468.1| Polynucleotide adenylyltransferase region [Acidobacterium sp.
MP5ACTX8]
Length = 598
Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/263 (16%), Positives = 83/263 (31%), Gaps = 20/263 (7%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
L + + +VGGAVRD ++D+D+ ++ + +
Sbjct: 19 ALAKVRDVARAHGMTVFLVGGAVRDLTSGSPIRDLDVTVQGNALKLKKDLQHAG--AVLV 76
Query: 74 SIS------YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
S Y T ++ + S V + D RRDFT NA+
Sbjct: 77 GESDLMQALYFT---FPGGIRLEVGSTLSVTYPKPGKPVVHASTIL-DDLRRRDFTANAM 132
Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ + +++ +ED R++R RF A G +
Sbjct: 133 AISLNEGSYGLLMDPLNGVADIDNRELRLVSNYGFIEDPARMIRAARFGARLGWHMEEKT 192
Query: 186 GLVASI-KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----Q 239
KA+ + + S E ++ ++PL + + + G K +F
Sbjct: 193 QQRYDTGKAEGYISAMDSAERGYETEEIFHEEDPLRVLRRLESEGWNKFLFPAWTSAKAN 252
Query: 240 EISLDQLSQVIEAEQVFEWKIDS 262
E L +L + + D
Sbjct: 253 ESELTRLRDTVGQLEAMGIHPDP 275
>gi|258404162|ref|YP_003196904.1| metal dependent phosphohydrolase [Desulfohalobium retbaense DSM
5692]
gi|257796389|gb|ACV67326.1| metal dependent phosphohydrolase [Desulfohalobium retbaense DSM
5692]
Length = 443
Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 57/434 (13%), Positives = 121/434 (27%), Gaps = 45/434 (10%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLM-NLSVQDIDIATTILPDRVMRIFSKTRYKVI 71
D I + + + + ++ A+++ L+ N ++DIAT + P + ++F
Sbjct: 6 KDAIALCKTIRRNGYDAYVISAALQERLLENEEHGEVDIATDMQPSELRKLFP--LLDSS 63
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
+ G + + + + A T R AL
Sbjct: 64 DENADLG--SLQEGDMLMRFYPMDTLASSHPEVAASRLTPRLMKKLEDRGELPTALACPY 121
Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
+V D G D + + IG + +YL +R RF A+Y + +
Sbjct: 122 IPEVPDAYAGFCDFSDGVVNLIGVPDATLRRNYLLGVRALRFAANYDLPMEPNTWVAILR 181
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ--- 248
A + L + I E K+ +Y I + ++ +S + +
Sbjct: 182 SASRILDYVPVSDIVDEWKKVEAENMA-QFFELLYETQILHGLIPELAALSKIKQRKSED 240
Query: 249 -------VIEAEQVFEWKIDSLLRFIV--------------------------LISWQDK 275
++L + W
Sbjct: 241 EPELETAWQHTLDKMRLYPETLPYDWLGTTACLFHDVGKLYTAEYTDGEWTFHQHPWVGA 300
Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335
K + K+ P E + + ++ + F D+ +
Sbjct: 301 KITRKILKRLRFPTEDLEVICHLVRHHKRFDSMLTDRGIRRFKAL-DEYPRIIEMARADV 359
Query: 336 HYNNLTHQDTCFILQVLSDII-HWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWI 393
+ ++ L + L G +++ + G+ PG VG I Q +
Sbjct: 360 KARGGNYTAFNHNMKYLERADVPEEMLEPLLNGKEIMDFTGLNPGPAVGIIRQALLQAQV 419
Query: 394 NSSFQLSQEDLHHL 407
E + +
Sbjct: 420 AGDVTSIPEAVEFI 433
>gi|298712997|emb|CBJ26899.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 719
Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/264 (19%), Positives = 89/264 (33%), Gaps = 38/264 (14%)
Query: 11 HDSDLINILSLLNKG--EDKSCIVGGAVRDSLMNLS--------VQ----DIDIAT-TIL 55
D +L ++ K + GG VRD L+ + DIDIA +
Sbjct: 131 EDKLFKTLLEMVEKEKMGTTLRVAGGWVRDKLVGQEQGFHQRHLSKVNKMDIDIALDNCM 190
Query: 56 PDRVMRIFSK------------------TRYKVIPTSISY-GTIKIICRKKYFDITTLRS 96
++ P + T + + D LR+
Sbjct: 191 GGDFAARLNRYLSRRKSDPGARKRMSKVALIASNPEKSKHLETATLRIDNFWVDFVNLRT 250
Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIG 154
+ + DS RRD TIN+L+ + ++ G +DLR ++
Sbjct: 251 ESYVQDSRIPSINIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPL 310
Query: 155 DAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKGLKILSSERIWSEINKL 212
+L+D LR LR RF + G + + +S ER+ E++++
Sbjct: 311 PPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPKVHEALCMKVSRERVGCELDQM 370
Query: 213 LEAKNPLNAIVHMYNGGIFKEIFL 236
+ + +PL A M I +F
Sbjct: 371 VRSASPLRAFELMEGMKILPMVFP 394
>gi|39979137|emb|CAE85511.1| related to tRNA nucleotidyltransferase [Neurospora crassa]
Length = 599
Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 25/176 (14%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFS-----------KTRYKVIPTSIS 76
GG VRD L+ DID+A + + +
Sbjct: 112 LRWAGGWVRDKLLGTESNDIDVAINNMTGEAFALRLRDYCDADPAHRERHSIGPADVGNL 171
Query: 77 YGTI------------KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ I D+ LR + T+ V + D+LRRD T+
Sbjct: 172 HKIARNPDKSKHLETTTIKLFGLDVDLVNLRKETYTEDSRHPQVEFGTAEEDALRRDATV 231
Query: 125 NALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
NAL+ + ++ G D+ + I+ + ++D LR+LR RF G
Sbjct: 232 NALFYNLHTGKVEDFTGGMKDMERKLIRTPLEPLQTFMDDPLRVLRLIRFACRLGF 287
Score = 46.4 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 343 QDTCFILQVLSDIIHWKKP--LFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQL 399
++ L L ++ P + G + G+ PGK +G L + +
Sbjct: 521 KEWQAFLDHLVEMDLMDAPSVKRIIDGKQLAKALGVKPGKWMGQALEVVMAWQLRNPTVS 580
Query: 400 SQE-DLHHLLRK 410
E + + ++
Sbjct: 581 DPEGAVEEVRKR 592
>gi|153956374|ref|YP_001397139.1| tRNA nucleotidyltransferase-related protein [Clostridium kluyveri
DSM 555]
gi|146349232|gb|EDK35768.1| TRNA nucleotidyltransferase-related protein [Clostridium kluyveri
DSM 555]
Length = 464
Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 79/461 (17%), Positives = 138/461 (29%), Gaps = 88/461 (19%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+N+ E + +VGG +R+ LMN+ +D D + YK P S
Sbjct: 13 DTINEVEGELYLVGGYIRNKLMNIASQPKDADFVFNGDIHEFISKLQNKGYKFFPIKESV 72
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
+ I K D++ + + D RDFTINAL I
Sbjct: 73 SIYRCIKDKNKIDVSL--------------MKGNSIEEDLENRDFTINALALRFSDNKII 118
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
I + ED RILR RF G + + K K +
Sbjct: 119 DPFYGRKAIQSRILKN-VTDRSLEEDPCRILRGIRFCITLGMH-FNLETENNIEKFKDKI 176
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE----------------- 240
L ER+++E ++E A + N GI K I ++E
Sbjct: 177 MDLPKERVFNEFMLIIENDKYGRAFEILDNYGILKNIVPYIEESKTIGKCKYHVEDVFTH 236
Query: 241 ---------------ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI------- 278
I+L L ++ E+ + + K +
Sbjct: 237 LNLTYGVFKDILNGSINLQNLDISKLDTKMGEFTLKEYAALACFLHDIGKYEVYKKVGNK 296
Query: 279 --------------LSMAKKFSLPREIRYFLISFFNCNF---NQKTLSIPEIKKLFYLYG 321
L ++ ++ + + N T KK FY +
Sbjct: 297 VSFHKHEIKGAAICRDFCNYMKLSKKAVKYIENIVEGHMYPLNIFTNKTVNRKKAFYKFF 356
Query: 322 DK-----------VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL--FPLTGD 368
+K + L + FI Q+L + + L+G+
Sbjct: 357 NKYDGYVVEIIITAFCDNCATKMLLEIKDKNLGFKEFIEQMLKEYKLYCNIRDNKILSGE 416
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+VV+ + G +V + + +++ED + L+
Sbjct: 417 EVVEVLVKSGPQVKTAIESIHRLRYLGEI-ITREDALNYLK 456
>gi|327398483|ref|YP_004339352.1| polynucleotide adenylyltransferase region [Hippea maritima DSM
10411]
gi|327181112|gb|AEA33293.1| Polynucleotide adenylyltransferase region [Hippea maritima DSM
10411]
Length = 466
Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 65/473 (13%), Positives = 132/473 (27%), Gaps = 91/473 (19%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L I ++ K + +VGGA+RD+L+ D D + + + +
Sbjct: 10 LTEIAAIAKKLNTEIYLVGGAIRDALLKRQTNDYDFVVFGDIEGLAKAVAHL-------- 61
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+G + KK D + ++ + D RDFTIN++ D
Sbjct: 62 --FGCKTVKYNKKLLTYRVFCKIKTLDFSAPR---GKNIQEDLKFRDFTINSIAFDLNSN 116
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF--AHYGEKNIDSDGLVASIK 192
+ G + + I + I ED LRILR FR + ++
Sbjct: 117 TLIDPLGAKEDLRKGIIKANSPN-SIKEDPLRILRGFRLAALFRFDIDPRTILLFRKHVE 175
Query: 193 AKKGLKILSSER------IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ + +E L + + I ++ F + D
Sbjct: 176 LLNRVSKERITQELKLFFNLNETFTYLLIMDKVGIIDTLFEDLSFTNGCIQSNYHLFDVK 235
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP------------------ 288
+ + EW + L R + + + + ++
Sbjct: 236 THSLSVYNYIEWAYNRLARILGKAHKKYLPHLTTEKERLFCSLKLAALFHDAAKPFCKVV 295
Query: 289 -----------------------------REIRYFLISFFNCNFNQKTLSIPEIKK---- 315
++I F + L
Sbjct: 296 TPEGKIQFPLHAEQSYELFEKYAKAYSFGKKIIKLTRFFIKNHIKPAYLYQAWSNSELTE 355
Query: 316 ----LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF------ILQVLSDIIHWKKPLF-- 363
F+L + I L LA + + ++ +P F
Sbjct: 356 LQKVDFFLRYKEYGIDLLFFALADTLAKGKISASKRDVYIMFLQEMADYFYKHIQPKFKT 415
Query: 364 --PLTGDDVVKY--GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ +++ + K + +IL K+ I + ++E+ LL+ L+
Sbjct: 416 KPLIEAKEILTLYPSLEKSK-LKHILFEIKKLQIAKAI-NTKEEAGKLLKHLV 466
>gi|310825246|ref|YP_003957604.1| polynucleotide adenylyltransferase [Stigmatella aurantiaca DW4/3-1]
gi|309398318|gb|ADO75777.1| Polynucleotide adenylyltransferase [Stigmatella aurantiaca DW4/3-1]
Length = 256
Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 83/243 (34%), Gaps = 17/243 (6%)
Query: 1 MVSIVQHKWFHDSD----LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILP 56
M+S ++ + D+ + +++ LL + IVGGA RD LM + QD+DIA
Sbjct: 1 MLSSLEQVIYRDTAHEVRIQDVVGLLAAAGMQVYIVGGAPRDWLMGVPTQDVDIAVDRSM 60
Query: 57 DRVMRIFSKTRYKVIPTSI---SYGTIKIICRKK---YFDITTLRSD---LITDGRYAKV 107
+ V ++ + P +G + D + LRS D R
Sbjct: 61 EEVHQLLRHAYPDIDPVRSRLDRFG--MMCWGDDASGGVDFSFLRSPGDIQNDDMRTTSF 118
Query: 108 VFTRDWKADSLRRDFTINALYADQQGK--VIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165
+ D + D+L RDF++NA Y ++D +G + I + + Y
Sbjct: 119 IPRGDVRDDALMRDFSVNAFYFACHEGGVLLDPLGCGLEDVQGRILRLITHPRVLETSYR 178
Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
R +F ++ + + + + + +
Sbjct: 179 ITFRILQFICRGYTPAANALEHLERYADHDIQGTGARLLGFVNSHFGSQHGQREEFKQRL 238
Query: 226 YNG 228
Y
Sbjct: 239 YAC 241
>gi|159478320|ref|XP_001697252.1| tRNA-nucleotidyltransferase, mitochondrial [Chlamydomonas
reinhardtii]
gi|158274726|gb|EDP00507.1| tRNA-nucleotidyltransferase, mitochondrial [Chlamydomonas
reinhardtii]
Length = 200
Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/187 (24%), Positives = 71/187 (37%), Gaps = 19/187 (10%)
Query: 17 NILSLLNKGED--KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKT------- 66
+L+ + + GG VRD L+ DIDIA L + +
Sbjct: 11 TLLAAVRQAGSSTTLRCAGGWVRDKLLGRGSDDIDIALDDCLGKDFAELVNDWLKSQGRE 70
Query: 67 -----RYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
P + T ++ + + D+ LRS+ + + D+LRR
Sbjct: 71 ARHAAVIHSNPDQSKHLETARMKVGEVWLDLVNLRSETYAADSRIPTMTFGTPQQDALRR 130
Query: 121 DFTINALYADQQGKVIDYV---GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
DFTINAL+ + + GL DLR+ I+ L+D LR+LR RF +
Sbjct: 131 DFTINALFYNISAGGVVEDLTGRGLQDLRDGLIRTPLPPMETFLDDPLRVLRAVRFGTRF 190
Query: 178 GEKNIDS 184
G +
Sbjct: 191 GFQLHPD 197
>gi|221056136|ref|XP_002259206.1| tRNA nucleotidyltransferase [Plasmodium knowlesi strain H]
gi|193809277|emb|CAQ39979.1| tRNA nucleotidyltransferase, putative [Plasmodium knowlesi strain
H]
Length = 771
Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 16/194 (8%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICR-- 85
+VGG VRD + +S DID+ + + + + ++G IKI
Sbjct: 185 LRVVGGWVRDKFLGISNDDIDVTVDNMKGSEFCNYIKEYIKEKEKKNFNFGIIKINSDQS 244
Query: 86 -----------KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
DI LR++ T+ + + D+LRRDFT+NAL+ + +
Sbjct: 245 KHLETSSFHLFNFQVDIVNLRNEKYTEESRIPEIVIGTPEEDALRRDFTVNALFYNLSSR 304
Query: 135 VIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
++ G+ L+N+ I D + L+D LRI+R RF + S V +
Sbjct: 305 RVEDYTKRGILHLKNKVICTPLDPYTTFLDDPLRIIRCIRFCGVFNFLVEKSIFDVLKNE 364
Query: 193 AKKGLKILSSERIW 206
R
Sbjct: 365 HIMKAFKKKISRSR 378
>gi|222616709|gb|EEE52841.1| hypothetical protein OsJ_35375 [Oryza sativa Japonica Group]
Length = 554
Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 70/427 (16%), Positives = 131/427 (30%), Gaps = 66/427 (15%)
Query: 16 INILSLLNKGED--KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIF--------- 63
+L ++ + + GG VRD L+ DIDIA +
Sbjct: 35 RRLLDVVRHFGLGTQLRVAGGWVRDKLLGKDSTDIDIALDNMTGQNFCEKVNEYSELLGE 94
Query: 64 SKTRYKVIPTS----ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ VI + T +++ + D LRS+ + V K D+ R
Sbjct: 95 EQKGIGVIQCNPDQSKHLETARMLIFDIWIDFVNLRSEKYAENSRIPTVEIGTAKEDAFR 154
Query: 120 RDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TIN+L+ + ++ G+ DL+ I A L+D LR+LR RF A +
Sbjct: 155 RDLTINSLFFNINTNTVEDLTGRGIEDLKKGLIVTPLPAKATFLDDPLRVLRAIRFAARF 214
Query: 178 GEK-------------------NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218
+ S + + +S ERI E++ ++ K+P
Sbjct: 215 NFTLTEDLKDAASDEKVKSELGSKISKERIGHEVKSELGSKISKERIGHEVDLMMSDKHP 274
Query: 219 LNA---IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK 275
+NA I + + D+ ++ + W + + V D
Sbjct: 275 VNAMCYIRDLGLFYVVFAFPEKPDPPVPDKCDRLCVSHIEVAWNLAHSIGCSVFSGGSDS 334
Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335
KS + + + ++K I + + + A
Sbjct: 335 KSQDEHRRLCFYSALFTPVRNTIYLDKKSKKIPVTNYIIRDSLKLKASDADTVVNVHAA- 393
Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV----------GNIL 385
+ ++ +L + L + + ++ G IL
Sbjct: 394 ------SEKFAELINLLESNENLTTVKEKLDDEYL---------EIPTDSVKRVLAGLIL 438
Query: 386 VHCKQEW 392
K W
Sbjct: 439 REIKDFW 445
>gi|219856687|ref|YP_002473809.1| hypothetical protein CKR_3344 [Clostridium kluyveri NBRC 12016]
gi|219570411|dbj|BAH08395.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 467
Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 79/461 (17%), Positives = 138/461 (29%), Gaps = 88/461 (19%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77
+N+ E + +VGG +R+ LMN+ +D D + YK P S
Sbjct: 16 DTINEVEGELYLVGGYIRNKLMNIASQPKDADFVFNGDIHEFISKLQNKGYKFFPIKESV 75
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
+ I K D++ + + D RDFTINAL I
Sbjct: 76 SIYRCIKDKNKIDVSL--------------MKGNSIEEDLENRDFTINALALRFSDNKII 121
Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197
I + ED RILR RF G + + K K +
Sbjct: 122 DPFYGRKAIQSRILKN-VTDRSLEEDPCRILRGIRFCITLGMH-FNLETENNIEKFKDKI 179
Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE----------------- 240
L ER+++E ++E A + N GI K I ++E
Sbjct: 180 MDLPKERVFNEFMLIIENDKYGRAFEILDNYGILKNIVPYIEESKTIGKCKYHVEDVFTH 239
Query: 241 ---------------ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI------- 278
I+L L ++ E+ + + K +
Sbjct: 240 LNLTYGVFKDILNGSINLQNLDISKLDTKMGEFTLKEYAALACFLHDIGKYEVYKKVGNK 299
Query: 279 --------------LSMAKKFSLPREIRYFLISFFNCNF---NQKTLSIPEIKKLFYLYG 321
L ++ ++ + + N T KK FY +
Sbjct: 300 VSFHKHEIKGAAICRDFCNYMKLSKKAVKYIENIVEGHMYPLNIFTNKTVNRKKAFYKFF 359
Query: 322 DK-----------VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL--FPLTGD 368
+K + L + FI Q+L + + L+G+
Sbjct: 360 NKYDGYVVEIIITAFCDNCATKMLLEIKDKNLGFKEFIEQMLKEYKLYCNIRDNKILSGE 419
Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+VV+ + G +V + + +++ED + L+
Sbjct: 420 EVVEVLVKSGPQVKTAIESIHRLRYLGEI-ITREDALNYLK 459
>gi|320591774|gb|EFX04213.1| tRNA nucleotidyltransferase [Grosmannia clavigera kw1407]
Length = 539
Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/285 (17%), Positives = 93/285 (32%), Gaps = 28/285 (9%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-----ILPDRVMRI------FSKTRYKVIPTSISY 77
GG VRD L+ DID A ++ ++ + +
Sbjct: 70 LRWAGGWVRDRLLGRESHDIDTAIDTMTGFAFALKMQEFCGMAANAARHGMEPRDLGSLH 129
Query: 78 G------------TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
T + D LR + T +V + D+LRRD T+N
Sbjct: 130 KVEANPDKSKHLETATVRIFDMEVDFVNLRRETYTAESRNPLVEFGTPEEDALRRDATVN 189
Query: 126 ALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NI 182
AL+ + ++ G D+ R I+ +D LR+LR RF + +
Sbjct: 190 ALFYNLNCGTVEDFTGGVADMEARLIRTPLQPLQTFTDDPLRVLRLVRFASRLQFRIDPA 249
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF--LDVQE 240
+ + + +S ER+ +E+ K+L+ +P +++ + G++ IF +
Sbjct: 250 AEAVMADPSVLQALQQKISRERVGTEVEKMLKGNHPRDSLQLIDRLGLYHAIFTDPAHAD 309
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+L + + V + A
Sbjct: 310 APKPRLDGWTATYETLNHLAATTTPGSVYDVLVRTEEAQYFAWVL 354
>gi|116195956|ref|XP_001223790.1| hypothetical protein CHGG_04576 [Chaetomium globosum CBS 148.51]
gi|88180489|gb|EAQ87957.1| hypothetical protein CHGG_04576 [Chaetomium globosum CBS 148.51]
Length = 528
Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 63/352 (17%), Positives = 117/352 (33%), Gaps = 28/352 (7%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFS----------KTRYKVIPTSISY 77
GG VRD L+ + DID A + + + + +
Sbjct: 47 LRWAGGWVRDKLLGIPSHDIDTALSAMTGEEFVDRLRDYCDEPAHRERHALLPDDVGRLH 106
Query: 78 ------------GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125
T I D LR + T+ VV + D+LRRD ++N
Sbjct: 107 TVPRNPDKSKHLATSTIKLCGLDVDFVNLRRETYTESSRNPVVEFGTAEEDALRRDASVN 166
Query: 126 ALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
AL+ + +++ GGL DL I+ + L+D LR+LR RF + G K +
Sbjct: 167 ALFYNLGTGMVEDFVGGLADLEAGLIRTPLEPLQTFLDDPLRVLRLVRFASRLGFKIDPA 226
Query: 185 DGLVASIKAK--KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
V + +S ERI E+ K+++ K P+ ++ + G++ +F D +
Sbjct: 227 AEQVMGDERVLGNLKVKISRERIGVELEKMMKGKKPVESLRLIDRLGLYHAVFTDPERAG 286
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
+ + + ++ L S D A+ ++ +
Sbjct: 287 MPKPDTTTW--KTAYECLEQLEANKTPGSIYDLLVTSEEARYYAWSLATLTPWEPLPDDP 344
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354
+ + G K + A H + I++ +
Sbjct: 345 PLKSGKPALPLPTQAAREGFKAPNKLSDVVTAAHRHRRAILALRDIVREKRE 396
>gi|283852373|ref|ZP_06369643.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfovibrio sp. FW1012B]
gi|283572221|gb|EFC20211.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfovibrio sp. FW1012B]
Length = 397
Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 64/395 (16%), Positives = 125/395 (31%), Gaps = 57/395 (14%)
Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+ V D D + P+ +R + + R ++ +
Sbjct: 4 YLVGGAVRDILLGRPVVDQDYLIVDATPEAFLRRYRRAR----QVGKTFPVFML------ 53
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----KVIDYVGGLND 144
D D L RD TINA+ ++ + L D
Sbjct: 54 ------------GSAQYAWPRGDDINEDLLARDLTINAMAMGDSRQIAGRLHFHPLALTD 101
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKILSS 202
LR+R ++ G + +D LR+ R RF A + + + + ++ A L + +
Sbjct: 102 LRDRILRPCG--EMSMFDDPLRVYRAARFAASLPDFSPHPELLAQMKAVAACGVLSDIFA 159
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
ER+ E+ K L+A P + G +++ +
Sbjct: 160 ERVAQEVRKALDAPKPSRFFALLAETGCLLPWMPELEAARHVPAGPAEHHSGSVFAHMCD 219
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
+ + ++ K P + + E+ K L
Sbjct: 220 MADQLAGKPIAGWMAVCHDLGKTRTPE----CEWPRHHGHDEAGADVAEELGKRLKLPNR 275
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK--KPLFPL----TGDD---VVKY 373
+ + +L+ + + +PLF + +G+D +VK
Sbjct: 276 VRESGVAAARFHMKAARYHELRAGTRVDMLTWLHKHELVEPLFEVVRADSGEDVTGLVKR 335
Query: 374 GIP-------PGKK-----V-GNILVHCKQEWINS 395
+ PGK+ + G L + + + +
Sbjct: 336 DMKLMLSVHLPGKQRMRGPLSGEKLRNLRCQKLAE 370
>gi|302698537|ref|XP_003038947.1| hypothetical protein SCHCODRAFT_47611 [Schizophyllum commune H4-8]
gi|300112644|gb|EFJ04045.1| hypothetical protein SCHCODRAFT_47611 [Schizophyllum commune H4-8]
Length = 245
Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 17/168 (10%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKTR---------YKVIPTSI 75
I GG VRD L+ DID+A + + + F+K+R K P
Sbjct: 49 CRIAGGWVRDKLLGSQSNDIDVALSDVLGLTFAEHLSEFAKSRGVPVGTIGEIKANPNQS 108
Query: 76 SY-GTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+ T D+ LRS+ R + D+LRRD TINAL+ +
Sbjct: 109 KHLATATCKIHGYAIDLVNLRSEQYATDSRIPTGMAFGTPLQDALRRDITINALFYNIHD 168
Query: 134 KVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
+ ++ G +DLR+ ++ L+D LR+LR RF +G
Sbjct: 169 RAVEDHTGKGLDDLRSGIVRTPLPPRETFLDDPLRVLRCLRFATRFGF 216
>gi|255586471|ref|XP_002533879.1| poly(A) polymerase, putative [Ricinus communis]
gi|223526180|gb|EEF28510.1| poly(A) polymerase, putative [Ricinus communis]
Length = 577
Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 66/391 (16%), Positives = 130/391 (33%), Gaps = 41/391 (10%)
Query: 17 NILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKT------- 66
+L+ L + + GG VRD L+ DIDIA +L + +
Sbjct: 82 RLLNTLRHFNLQTQLRVAGGWVRDKLLGKDCYDIDIAIDNMLGSEFVDKVREYLLSTGEE 141
Query: 67 --RYKVIPTS----ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+IP + T ++ + D LR + T+ + + D+ RR
Sbjct: 142 VGGLGIIPRNPDQSKHLETARMRLFDLWIDFVNLRCEDYTEDSRIPTMKFGTAEEDAFRR 201
Query: 121 DFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
D TIN+L+ + ++ G+ DL+ I L+D LR+LR RF A +G
Sbjct: 202 DLTINSLFYNINTSSVEDLTERGIEDLKFGKIVTPLPPKATFLDDPLRVLRAIRFGARFG 261
Query: 179 E--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV---HMYNGGIFKE 233
+ +S ERI +EI+ +L P+ A+ + I
Sbjct: 262 FILDEELKEAAACDDVKNALAAKISKERIGNEIDLMLSGNQPVKAMTYIGDLTLFWIIFG 321
Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS-----ILSMAKKFSLP 288
+ V+ + ++ A W + +R Q + S L +
Sbjct: 322 LPPKVEPAVSEGCHKLCIAYLDATWNLIQSIRSSFFTDEQRRLSLYAALFLPFRNIIYIE 381
Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348
+ +++F + ++ S E + +K + + +
Sbjct: 382 KGKNVPVVNFIFKDSLKQKASDSETVMKIHKSLEKFLNIIPLLTSDDDTQPAEVDWALEL 441
Query: 349 LQ-------------VLSDIIHWKKPLFPLT 366
+ +L +I + + ++
Sbjct: 442 IDVPFSAKLRVLTGFLLREIKDFWRVALLIS 472
>gi|116625462|ref|YP_827618.1| polynucleotide adenylyltransferase region [Candidatus Solibacter
usitatus Ellin6076]
gi|116228624|gb|ABJ87333.1| Polynucleotide adenylyltransferase region [Candidatus Solibacter
usitatus Ellin6076]
Length = 437
Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/277 (14%), Positives = 92/277 (33%), Gaps = 11/277 (3%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR-IFSKTRYK 69
+ + ++ + + GGA+RD + ++D+D ++ + I KT
Sbjct: 16 QNRAVEDVQAAAGMVNVNVFLTGGAMRDMIAGFRIRDLDFVVEGNALKMAKAICEKTGAT 75
Query: 70 VIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
++ + + T +I+ I R + V + D RDFT NA+
Sbjct: 76 LVSSDENRKTAEIVFPSGVTAQIGMSRQEKYARSGGKPQVTPATIQEDLRGRDFTANAIA 135
Query: 129 ADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
++D + GL D+ + ++ + +D R+LR RF G +
Sbjct: 136 LSLNRASRGLLLDPMNGLADIERKELRAVSTYG--FYDDPTRLLRLVRFKVRLGFTIEER 193
Query: 185 DGLVASIKAKKGLKILSSERIW-SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
+ + + ++ + E+ ++ NP + + G+ +
Sbjct: 194 TQMQVANAREAEVEKRIPAKALGEELKRISAEDNPTEILKGLEEAGLLAMFSPVL--FGK 251
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
L+ + + E+ D +
Sbjct: 252 LNLASLAKLEKALHVLPDDARWRAARWGTFMHAATEK 288
>gi|218961944|ref|YP_001741719.1| Putative polyA polymerase (fragment) [Candidatus Cloacamonas
acidaminovorans]
gi|167730601|emb|CAO81513.1| Putative polyA polymerase (fragment) [Candidatus Cloacamonas
acidaminovorans]
Length = 237
Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 70/193 (36%), Gaps = 8/193 (4%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQ---DIDIATTIL--PDRVMRIFS-KTRYKVIPTSIS 76
++ DKS GG VRD +++ D+DI + + + + + + S
Sbjct: 17 SEFADKSYFAGGCVRDFILDPDATLKGDVDICVELPEGGIALAQYLQNRLQASELVIHKS 76
Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136
+GT ++ + + R + V D LRRDFTINAL I
Sbjct: 77 FGTASLLYKNLQLEFVATRKEQYFPNNRYPKVEFGTLVDDVLRRDFTINALLMAITTGEI 136
Query: 137 --DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
GLNDL+ I+ + D + ED LR+LR +F + + A
Sbjct: 137 LDLCQKGLNDLQQGIIRTVKDPNLSFTEDPLRMLRALQFAMRFNFSIEEKTFKAMRKNAP 196
Query: 195 KGLKILSSERIWS 207
+
Sbjct: 197 ALKILSHRAIQNE 209
>gi|328875376|gb|EGG23741.1| tRNA nucleotidyltransferase [Dictyostelium fasciculatum]
Length = 607
Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 24/242 (9%)
Query: 16 INILSLL------NKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK--- 65
+ +L N + GG VRD L + DIDIA ++ + + +K
Sbjct: 104 QKLFQILLDVAKVNNCNTTLRVAGGWVRDKLRGDNSHDIDIALDNMMGEAFAALVNKYLE 163
Query: 66 ------TRYKVI----PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115
R VI S T + + D+ LRS+ + + +
Sbjct: 164 DHHQETHRIGVIQSNPDQSKHLETATVKIFDSWVDLVNLRSETYSSNSRIPEIKIGTPEQ 223
Query: 116 DSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
D+ RRD TIN+L+ + I+ G+ DL+ ++ L+D LR+LR RF
Sbjct: 224 DAFRRDLTINSLFYNVNENRIEDFTGNGIVDLKCGIVRTPLPPLTTFLDDPLRVLRSIRF 283
Query: 174 FAHYGEKNIDS--DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231
+ + +S ERI E++ +L P AI +Y G+F
Sbjct: 284 ATRLYYAIDHKLVEAASNPTVKEALKSKVSHERIGIELDGMLNGPRPDLAIQLIYEFGLF 343
Query: 232 KE 233
Sbjct: 344 DH 345
>gi|258566840|ref|XP_002584164.1| predicted protein [Uncinocarpus reesii 1704]
gi|237905610|gb|EEP80011.1| predicted protein [Uncinocarpus reesii 1704]
Length = 421
Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 59/385 (15%), Positives = 120/385 (31%), Gaps = 47/385 (12%)
Query: 15 LINILSLLNKGEDK-----------SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63
L++++ + + + GG VRD L+ + DID
Sbjct: 28 LLDVVEYIKQKGVRNGNESAAGELVLRFTGGWVRDKLLGVESHDID-------------A 74
Query: 64 SKTRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122
+ TR K IP + T+ D+ LR + +D + + D+LRRD
Sbjct: 75 AFTRLKQIPEKSKHLETVATKIFGLEVDLVNLRKETYSDHSRHPEMEFGTAEEDALRRDA 134
Query: 123 TINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
T+NAL+ + I+ G+ DL ++ I+ + +D LR+LR RF + G +
Sbjct: 135 TLNALFYNLHTSSIEDFTGRGIADLNSQLIRTPLQPYQTFKDDPLRVLRLIRFSSRLGYR 194
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
K L + K P + ++ K
Sbjct: 195 IHPLTEDAMQHDDIKSALKLKISQERIGAEVEKMLKGPDP-LRALHIIDRLKLYDTIFAN 253
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
D + V + ++ + ++L + ++ + ++ Y
Sbjct: 254 HQDDVVVDVSCWSRAYQ-PLMAILDDNYDQEFATQQDRAFLRNVLLRDKDDVYHSWMLAA 312
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
++ + A +L +N T ++ D+
Sbjct: 313 ----LSPWAVVPQVAALPNRKELPPRAATVARDSLRADNKTFNILKSTVKYYRDV----- 363
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNIL 385
D+ + +++G L
Sbjct: 364 -------SDLKSAFLK--RELGQTL 379
>gi|164423663|ref|XP_962692.2| hypothetical protein NCU08022 [Neurospora crassa OR74A]
gi|157070187|gb|EAA33456.2| hypothetical protein NCU08022 [Neurospora crassa OR74A]
Length = 541
Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 25/176 (14%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFS-----------KTRYKVIPTSIS 76
GG VRD L+ DID+A + + +
Sbjct: 54 LRWAGGWVRDKLLGTESNDIDVAINNMTGEAFALRLRDYCDADPAHRERHSIGPADVGNL 113
Query: 77 YGTI------------KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ I D+ LR + T+ V + D+LRRD T+
Sbjct: 114 HKIARNPDKSKHLETTTIKLFGLDVDLVNLRKETYTEDSRHPQVEFGTAEEDALRRDATV 173
Query: 125 NALYADQQGKVIDYVGGLN-DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
NAL+ + ++ G D+ + I+ + ++D LR+LR RF G
Sbjct: 174 NALFYNLHTGKVEDFTGGMKDMERKLIRTPLEPLQTFMDDPLRVLRLIRFACRLGF 229
Score = 46.0 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 343 QDTCFILQVLSDIIHWKKP--LFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQL 399
++ L L ++ P + G + G+ PGK +G L + +
Sbjct: 463 KEWQAFLDHLVEMDLMDAPSVKRIIDGKQLAKALGVKPGKWMGQALEVVMAWQLRNPTVS 522
Query: 400 SQE-DLHHLLRK 410
E + + ++
Sbjct: 523 DPEGAVEEVRKR 534
>gi|317038811|ref|XP_001402226.2| poly(A) polymerase [Aspergillus niger CBS 513.88]
Length = 563
Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 67/478 (14%), Positives = 138/478 (28%), Gaps = 92/478 (19%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK---------------------- 65
GG VRD L+ + D+D+ + + + +
Sbjct: 81 LRFTGGWVRDKLLGVGSNDVDVGINNMTGYQFGLLLKEYMDRPENLEKYRQEQPNGELKH 140
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + P + T+ D+ LR + ++ + + D++R
Sbjct: 141 AIASLHKIEANPEKSKHLETVTTRIFGLDIDLVNLRKETYSEDSRNPQMEFGTAQEDAMR 200
Query: 120 RDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TINAL+ + +++ G D++ I+ + + +D LR+LR RF +
Sbjct: 201 RDATINALFYNLNESIVEDFTGRGLEDMKKEIIRTPMEPYQTFQDDPLRVLRLIRFASRL 260
Query: 178 GEKNIDSDGLVASIK--AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G + + +S ER+ EI K+L+ +P A+ + + G++ IF
Sbjct: 261 GYNIERETQEAMRNELIGEALKLKISRERVGKEIEKMLQGPDPRGALQFIDSLGLYPTIF 320
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKID------------SLLRFIVLISWQDKKSILSMAK 283
+ Q+ + S A E + L+R + + + +
Sbjct: 321 ANHQDDAQADTSSWALAYNALEKILKDETNAATVNVRQFLIRDKLESYYAWVIAAFAPWS 380
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM------------------ 325
S+ K + GD
Sbjct: 381 SIPSRVARGPKAKPLPARTAEVARDSLRADNKTIAVIGDAAHNWQAITDVKNSVLEGRMD 440
Query: 326 -------------------IAKLKIFLALHYNNLTHQDTCFILQVLSDI----------I 356
+L I L++ + + +LQ
Sbjct: 441 GTAAEARQQVGLHIRSWKKDWRLCILLSILQEIMRGGEFTSVLQSYDRFLSYIKEQDLQD 500
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++ G+ V G G + L + + +E + L +
Sbjct: 501 AFELKPLANGGEIVKALGCKTGPWMSKALDMSIKWQLLHPEVTDKEKVLEELSRRKEE 558
>gi|303388807|ref|XP_003072637.1| tRNA nucleotidyltransferase/poly(A) polymerase [Encephalitozoon
intestinalis ATCC 50506]
gi|303301778|gb|ADM11277.1| tRNA nucleotidyltransferase/poly(A) polymerase [Encephalitozoon
intestinalis ATCC 50506]
Length = 460
Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 76/452 (16%), Positives = 147/452 (32%), Gaps = 62/452 (13%)
Query: 18 ILSLLNKGEDK-----SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK------ 65
I +L+ + + GG VRD +M D+DIA I + K
Sbjct: 14 IFNLIRSHAKEFGNVTPRVAGGWVRDKIMGHPSFDMDIALENISGYKFAAGLMKSSTGQK 73
Query: 66 ----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
K P + T + D LR++ ++ R V + RR
Sbjct: 74 LTEVHVIKDNPEKSKHLETAVVRINGFCVDFVNLRNETYSETRIPNVNPGTPQEDAF-RR 132
Query: 121 DFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
D TIN+L+ + K ++ G++D++N+ + D + +D LR++R FRF + G
Sbjct: 133 DLTINSLFYNLFTKEVEDYTGRGIDDIKNKLLITPLDPRTTLFDDPLRLVRIFRFHSKLG 192
Query: 179 EK---NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
K I+ + IK G K+ + L + + + G +
Sbjct: 193 FKIDGKIEEALMDERIKRALGKKVSNERIHIEIFKILHYPRGQYGLLEIVRRGYVSPVFK 252
Query: 236 LDVQ-----EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
V+ E L V + ++ + + + +S + K
Sbjct: 253 PPVERETPYEKGLMFCETVEKITNLWGRTYRREILNLYTVLCFFSRSTVPNGKSLLFSNA 312
Query: 291 IRYFL-----ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI-----------AKLKIFLA 334
+ F + + GD+ +I L I+ A
Sbjct: 313 YIMKISLPSSRRFVKTINKIEESLVFLSGYDMKKIGDEDLIRIVRFMGETWYESLVIYSA 372
Query: 335 LHYNNLTHQDTCFILQVL-----SDIIHWKKPLFPLTGDDVVK-YGIPP---GKKVGNIL 385
+ Y H+ L+V+ +I + + + GIP G
Sbjct: 373 IEYIEDNHEKYEDGLRVVYSIIQQEIGECYLVKPIIDTRCLAETLGIPKSDTG------- 425
Query: 386 VHCKQEWINS--SFQLSQEDLHHLLRKLIASS 415
+ ++ + + E++ + LR++ S
Sbjct: 426 FYIEESVVYQLLNRTSEPEEIINYLRRIKTSR 457
>gi|242309097|ref|ZP_04808252.1| tRNA nucleotidyl transferase [Helicobacter pullorum MIT 98-5489]
gi|239524521|gb|EEQ64387.1| tRNA nucleotidyl transferase [Helicobacter pullorum MIT 98-5489]
Length = 413
Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 72/367 (19%), Positives = 113/367 (30%), Gaps = 49/367 (13%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGA+RD L+ +D D +A + I
Sbjct: 16 KIYLVGGAIRDYLLGFPTKDKDYVAVGSDGKDF--------INYPKVGKIFPVFLIDSHT 67
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYVGGLNDL 145
+ T ++ D RRD TIN++ D Q +ID G DL
Sbjct: 68 QIALARTETKTSNGYNGFSYQTKNITLIQDLKRRDLTINSMALDLQTRHIIDPFNGKKDL 127
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNIDSDGLVASIKAKKGLKILSSER 204
+N+ ++ ED LR+LR RF A G I KK LK L R
Sbjct: 128 QNKILRHT---SQAFCEDPLRVLRIARFRAKLGIKWKIHPSTKALIYTMKKELKFLEPNR 184
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264
I+ E L KN ++ G+ +EIF + ++ + + E +L
Sbjct: 185 IYQETITALSYKNSHLFFETLFELGVLEEIFPSIYTLTTLKEGSLYHLESSVFVHTMEVL 244
Query: 265 -------------------------RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299
R + D I+ +P+ I+ ++
Sbjct: 245 KLLCSNSTLLKLTALYHDIAKPYTYRHFGNSNGHDNPKIVESLIDMQIPKNIKKQMLILI 304
Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359
+ LS K+ + + L L Q F I ++
Sbjct: 305 ANHIKISHLSQMRPNKILHFFESFNKDKML----------LKVQIKLFYADQKGRISDYQ 354
Query: 360 KPLFPLT 366
P PL
Sbjct: 355 IPSLPLK 361
>gi|66800349|ref|XP_629100.1| hypothetical protein DDB_G0293504 [Dictyostelium discoideum AX4]
gi|60462467|gb|EAL60687.1| hypothetical protein DDB_G0293504 [Dictyostelium discoideum AX4]
Length = 558
Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 81/476 (17%), Positives = 155/476 (32%), Gaps = 82/476 (17%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKT----- 66
+L++++ + + GG VRD L DIDI ++ + + +K
Sbjct: 80 KELMHVIRD-SGCGTTLRVAGGWVRDKLRGDDSNDIDITLDNMMGEAFAELVNKHLSSKH 138
Query: 67 -------RYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
+ P + T + + D LRS+ TD V+ D+L
Sbjct: 139 HQTHRIGVIQSNPEQSKHLETATVKVFDMWIDFVNLRSESYTDTSRIPVISIGTPLQDAL 198
Query: 119 RRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RRD TIN+L+ + I+ G+NDLR+ I+ + L+D LR+ R RF +
Sbjct: 199 RRDLTINSLFFNINENRIEDFTGQGINDLRDGIIRTPLPSLTTFLDDPLRVFRSIRFASR 258
Query: 177 YGEKNIDSDGL--VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG----GI 230
K + + +S ERI E + +L A+ P +I + +
Sbjct: 259 LNFKIDEELFKAGSDPVVKDAIKSKISHERIAKEFDGMLSAEEPYLSIELINKFGLFDCL 318
Query: 231 FKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL-------------------------- 264
F + + E ++QL + + + DS +
Sbjct: 319 FSLPTVGLDETYIEQLKNSNKDSEKYCEIADSWIGMGKQYEEIDTKRQLILSALMIPFYG 378
Query: 265 -----------------RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+ K ++ ++ +I F + +
Sbjct: 379 IKFKNANKKNKEMSIIHYMFIEYIKFSNKDYDDVSLILECSEQLMEHIIKFVSAGIFNRK 438
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIF--------LALHYNNLTHQDTCFILQVLSDII--- 356
I K L+ ++I+ +KI L Y+ ++ + + +I
Sbjct: 439 EIGLIIHKSAQLWIVVIIISFIKIQYRPNKLQTLFSRYDKPENEKYTIFHKFVGEIKEHD 498
Query: 357 ---HWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
W L G V PG + ++ + + + + Q+ LL
Sbjct: 499 LIGIWNIKRL-LNGKQVQDLLNRKPGTWLAPVIQLILEWQLENPSKTEQDCKDWLL 553
>gi|224004100|ref|XP_002295701.1| hypothetical protein THAPS_263072 [Thalassiosira pseudonana
CCMP1335]
gi|209585733|gb|ACI64418.1| hypothetical protein THAPS_263072 [Thalassiosira pseudonana
CCMP1335]
Length = 477
Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 73/478 (15%), Positives = 139/478 (29%), Gaps = 90/478 (18%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRI-----------FSKTR-YKVIPTS 74
+ + GG VRD L+N D+D+A + + RI K P+
Sbjct: 1 EIRVAGGWVRDKLLNQHSSDVDVALDCMMGVQFARIVQSFLALQSNKLPKVGVIGANPSQ 60
Query: 75 ISY-GTIKIICRKKYFDITTLRSD--LITDGRYA--KVVFTRDWKADSLRRDFTINALYA 129
+ T + D LR++ + R D+LRRDFTIN+L+
Sbjct: 61 SKHLETATMNIHGIDVDFVNLRAEEVYEANSRIPTSDTRNFGSPLEDALRRDFTINSLFY 120
Query: 130 DQQGKVIDYVGGL---NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDS 184
+ + + I+ G + L +R I DAH +D LR+LR RF
Sbjct: 121 NIRTRKIEDWTGRGLVDLLEHRKIVTPVDAHETFHDDPLRVLRAIRFCVRLDFVLDEQLK 180
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA--------IVHMYNGGIFKEIFL 236
++ +S ER+ E+ +L K + + F F
Sbjct: 181 SAAMSKRVHHSLHVKVSRERVGKELEGMLTGKGARPGCALDTIADLHLAGSVFCFPGSFP 240
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR---EIRY 293
+ ++ ++E K L V + S P
Sbjct: 241 GDHDYQAGEIIAREKSEASDGMKDSCTLSSTVDARLLHLCVFILPFHNLSFPDSKGRETS 300
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM---------------------------- 325
+ T I + + +
Sbjct: 301 VASHMIKESLKFPTRDIQAVTTILRHVDEMSELLSGIRTQLMAQQKQEVEGGTPIKLPPP 360
Query: 326 -----------IAKLKIFLALHYNNLTHQDTCFILQVLSD---------------IIHWK 359
+ + + L +L + + + D +
Sbjct: 361 CRLRAGLLLRSLKEHWVTCLLTAASLEIRSVERLNKQYEDEVNGTIDATTNGIGDLDECW 420
Query: 360 KPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+ L G +++K +P G VG + + +W+ + ++E+ L++ +
Sbjct: 421 RVRPHLNGKEIIKELSLPKGPAVGVYIDD-QIQWMLLNPNGTREECMSHLQERKRERE 477
>gi|118443843|ref|YP_879215.1| polyA polymerase family protein [Clostridium novyi NT]
gi|118134299|gb|ABK61343.1| polyA polymerase family protein [Clostridium novyi NT]
Length = 457
Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 77/468 (16%), Positives = 145/468 (30%), Gaps = 88/468 (18%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ NI + + + I+GG +RD L+N +D+DI + + + ++
Sbjct: 5 IENIKKAVKEVGGEVYIIGGYIRDKLLNTKEASKDLDIIYNGDIKLFLDKLTMDGFHIVT 64
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ I DI ++ + + D +RDFTINA+
Sbjct: 65 LKDEQQIYRAILNDITVDIALIKGE--------------SIEEDLSKRDFTINAIALKLI 110
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
I N + + I +D +RILR +RF YG + I
Sbjct: 111 DNKIIDPFNGRRHLNAKLIHT-VNENSISDDSVRILRAYRFAIKYGMH-FSKECEKQIID 168
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS---------- 242
K + ERI++E ++++ A + G+ K + + E+
Sbjct: 169 NKHNIMKFPKERIFNEFMQIIKCDKFGRAFEELDTLGVLKNLLPYIDELKTVGRCKYHIE 228
Query: 243 ----------------------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
++ L I + E+ I F K
Sbjct: 229 DAFTHMNLVYKNSKALLNGELFIEGLELNIFNNNIGEFLISEYFSFAAFCHDIGKFVCHR 288
Query: 281 ---------------------MAKKFSLPREIRYFLISFFNCNF-------NQKTLSIPE 312
+ KF P+E + F+ S + N
Sbjct: 289 EKDGRVSFIGHDKEGAKIMMDICNKFGFPKEAKKFICSLIEAHMYPLGLCKNNVKNYKKS 348
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHY-------NNLTHQDTCFILQVLSDIIHWKKPLFP- 364
K F Y V F +H NN F+ ++ + +K +
Sbjct: 349 FYKFFLRYNKYVEYILALSFCDMHATKMLYDPNNEEKIFKSFLERLYKEYNEFKDAINSD 408
Query: 365 -LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+ G V++ G+++ IL ++ + ++ED+ L K+
Sbjct: 409 WIDGKLVIELTGAEGEEIKTILNDVYKK-MYYKELNNKEDVLKYLNKI 455
>gi|1139585|gb|AAB03077.1| tRNA nucleotidyltransferase [Lupinus albus]
Length = 560
Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/272 (19%), Positives = 99/272 (36%), Gaps = 24/272 (8%)
Query: 17 NILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK-------- 65
+L+ L + + GG VRD L+ DIDIA ++ + +
Sbjct: 79 RLLATLRFFNLQTHLRVAGGWVRDKLLGKECYDIDIALDKMMGTEFVDKVREYLLSIGEE 138
Query: 66 ----TRYKVIPTSISY-GTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLR 119
+ P + T ++ + D LR + + R + + D+ R
Sbjct: 139 AQGVCVIESNPDQSKHLETARMRLFDMWIDFVNLRSEEYTDNSRIPSMQRFGTPEEDAYR 198
Query: 120 RDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TIN+L+ + ++ G++DL++ I L+D LR++R RF A +
Sbjct: 199 RDLTINSLFYNINTDSVEDFTKRGISDLKSGKIVTPLPPKATFLDDPLRVVRAIRFGARF 258
Query: 178 GE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA---IVHMYNGGIFK 232
+S ERI +EI+ ++ P+ A I + I
Sbjct: 259 EFTLDEDLKQAAACDEVKDALAAKISRERIGTEIDLMISGNQPVKAMTYICDLTIFWIVF 318
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264
+ + D ++ ++ W + LL
Sbjct: 319 SLPPTFEPAISDGCERLCISQLDISWNLIHLL 350
>gi|332703502|ref|ZP_08423590.1| metal dependent phosphohydrolase [Desulfovibrio africanus str.
Walvis Bay]
gi|332553651|gb|EGJ50695.1| metal dependent phosphohydrolase [Desulfovibrio africanus str.
Walvis Bay]
Length = 441
Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 52/446 (11%), Positives = 131/446 (29%), Gaps = 62/446 (13%)
Query: 13 SDLINILSLLNKGEDKSCI--VGGAVRDSLMNLS------VQDIDIATTILPDRVMRIFS 64
+++ + + + + G + + ++DIAT + + + R+F
Sbjct: 6 KQAVDLCKTIMRNGFDAYVINAG-------LQQTLFAEDRPSEVDIATDMPLEELSRLFP 58
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ T ++ F + A + T + T
Sbjct: 59 NCGASQ-EGGV---TGMLVQDDTTFRFYAGGDEEAGHPETAVLKITPSIIRRMDGQGLTT 114
Query: 125 N-ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
N G D +KF G + +YL +R RF A+Y + I+
Sbjct: 115 NLTCAYTPSNG--GSYAGFEDFSAGELKFSGLPDETLRHNYLLGIRALRFAANY-QLKIE 171
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243
+ +A ++ + + S + +EA+N +++ I + +V +S
Sbjct: 172 HNSWLAIVRGARRILDYVSVTDLMDEFSKVEAENLWLFFKLLFDSMILHGLIPEVAALSR 231
Query: 244 DQLSQVI--EAEQVFEWKIDSLLRFIVLISWQDKKSI----------------------- 278
++ + E VF ++ + R+ + + ++
Sbjct: 232 ITQAKTDAGQTEDVFAHTLEVMRRYPEELPYDWFGTLACLFHDVGKLYTAEHFEGKWNFY 291
Query: 279 ----------LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
+ K+ + E + + + + F D+
Sbjct: 292 QHHKIGAKVTRKILKRLRMDPEDIDLICHLVRQHMRFHFMLTDRGIRRFKAL-DEYPRLI 350
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDII-HWKKPLFPLTGDDVVKY-GIPPGKKVGNILV 386
+ + ++ L L G +++++ G+ PG VG I
Sbjct: 351 EIARADIKARGGNYTYFNHNMKYLERADVPEDMLEPLLNGREIMEHTGLKPGPAVGLIRD 410
Query: 387 HCKQEWINSSFQLSQEDLHHLLRKLI 412
+ I+ + + +++
Sbjct: 411 ELLKAQISGEVADTASAI-AYVKQYK 435
>gi|57237634|ref|YP_178882.1| polyA polymerase family protein [Campylobacter jejuni RM1221]
gi|57166438|gb|AAW35217.1| polyA polymerase family protein [Campylobacter jejuni RM1221]
Length = 343
Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 63/386 (16%), Positives = 120/386 (31%), Gaps = 48/386 (12%)
Query: 32 VGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90
VGG+VRD + L + D DI I P +I K + S+ + + K +D
Sbjct: 2 VGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKLGAQGF--GKSF----FVYKFKNYD 55
Query: 91 ITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147
+ R++ + D K + RRDFTIN++ + + +D+ GGL DL
Sbjct: 56 LALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLEA 115
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
++ ED LR+LR F + + K + L
Sbjct: 116 GFLR--HIDKQSFQEDSLRVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELY 173
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267
+ K + + + + + ++ + F L
Sbjct: 174 KFFKSPRLDVGYRYLQELGLEKQVFGFESVFKSL---EFQNLLRQSREFVKSDALFLYLY 230
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
+ +K +++ + + N F +S E+ K+ + K +
Sbjct: 231 LNFFNLEKDIFFKRT-------KLKKEYLKYANQAFYLDDISDFELAKIAFEMPLKEWLG 283
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
L + F ++L D + G GK +G L
Sbjct: 284 LWSKKRIEQAKRLGLYENKFESKIL--------------AKDFINAGF-CGKILGLKLQE 328
Query: 388 CKQEWINSSFQLSQEDLHHLLRKLIA 413
++ +L ++ L
Sbjct: 329 ARE-----------NELKEYIKGLAK 343
>gi|242817434|ref|XP_002486954.1| tRNA nucleotidyltransferase [Talaromyces stipitatus ATCC 10500]
gi|218713419|gb|EED12843.1| tRNA nucleotidyltransferase [Talaromyces stipitatus ATCC 10500]
Length = 635
Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 62/355 (17%), Positives = 125/355 (35%), Gaps = 34/355 (9%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRV--------------------------MR 61
GG VRD L+ ++ DID+A + + +
Sbjct: 133 LRFTGGWVRDKLLGVTSHDIDVAISTMTGLQFGTYLQEYLDDPDNLQKYMDNKELAFTSE 192
Query: 62 IFSKTRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ K P + T+ D+ LR + T+ V + D+LRR
Sbjct: 193 MLKVHTIKANPEKSKHLETVATKLFGLDIDLVNLRKETYTEHSRNPQVEFGTAEEDALRR 252
Query: 121 DFTINALYADQQGKVIDYVG--GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
D T+NAL+ + +++ GL+D+ + I+ + + +D LR+LR RF + G
Sbjct: 253 DATVNALFYNLNTSMLEDFTGLGLDDMERKLIRTPLEPYQTFKDDPLRVLRLIRFASRLG 312
Query: 179 EKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ K +S ER+ E+ K L A +P + ++ + G++ IF
Sbjct: 313 YHIDEKTQEAMQNDDIKRAFKLKISKERVGVEVEKTLRAADPRIGLRYIDDLGLYSTIFA 372
Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296
+ + + ++ A + + +L+ L + K+IL + + +
Sbjct: 373 NQYDDAEPHVASWSLAYDALDHILSRVLKTDELRHIKRIKNILIRNEDETFYAWVMAAFT 432
Query: 297 SFFNCNFNQKTLSIPEIKKLFY--LYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349
+ T + + + + KI AL ++ +
Sbjct: 433 PWVTVPERVPTSRKQKPPIIARAAEVARDNLRMENKIVNALKDATALFKEVSSLK 487
>gi|308813708|ref|XP_003084160.1| polynucleotide adenylyltransferase family protein (ISS)
[Ostreococcus tauri]
gi|116056043|emb|CAL58576.1| polynucleotide adenylyltransferase family protein (ISS)
[Ostreococcus tauri]
Length = 596
Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 45/283 (15%), Positives = 96/283 (33%), Gaps = 59/283 (20%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76
+ L + +VGGAVRD +DID+AT + + R R
Sbjct: 112 RLARRLRE---DVYVVGGAVRDWASGREARDIDLATRASWEEISRADRSAR----RVGRR 164
Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW----------------------- 113
+ + + ++ + G+ D
Sbjct: 165 FPVALLRAGRGTVELASFGRGRANVGKVEVRDVEDDEDVDGESPMTPSGEVDYDEILRRR 224
Query: 114 ---------------------------KADSLRRDFTINALYADQQGKVI-DYVGGLNDL 145
+ ++ RDFT+NA++ D + I D+VGG+ND+
Sbjct: 225 RRVRTTRATVRTPRVRMDEEMERLVECEDNAYERDFTVNAMFYDPRRNEILDFVGGMNDV 284
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
R ++ + + + ED +R+LR R A +G + + L + R+
Sbjct: 285 LARVVRTVKPTYESLREDPVRMLRAIRLAARHGY-TMTKELRAGLRAYGPILAHENPRRV 343
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ E+ L+ + +++ + + +F + + ++ +
Sbjct: 344 FVEMETLMHHGHSEQTFKLLWHSLLMQYMFPVQNDFLVPRMPK 386
>gi|117924282|ref|YP_864899.1| metal dependent phosphohydrolase [Magnetococcus sp. MC-1]
gi|117608038|gb|ABK43493.1| metal dependent phosphohydrolase [Magnetococcus sp. MC-1]
Length = 473
Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 61/455 (13%), Positives = 128/455 (28%), Gaps = 60/455 (13%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTRYK 69
+ N+L L+ +VGG +RDSL + + ++D+ D + K Y
Sbjct: 9 FSPFVQNLLDDLHWIVGPIYMVGGGLRDSLRHRFTAHELDLVVLKPLDEARELLQKAGYP 68
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ T+ + K+ T+ G A+ R + D RD T+NA+
Sbjct: 69 AVVQGQRPNTLILPL-KRQEPPNTINLSCCCGGVKAE----RGIEEDLRHRDITVNAIAY 123
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA-------------- 175
+ + + + ED LR LRFFRF
Sbjct: 124 CWPDGPLIDPFNGVKDLEENRIRLVNGEETVREDPLRALRFFRFIIQLAGEPDPEDLYAA 183
Query: 176 -------------------------HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210
L + K L + + + E
Sbjct: 184 AHTTLYQIQPELLRGETDRILSLPLRDKHSQHYIFELFKTPLGKDLLPEFAPLKAFPEQP 243
Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270
E+ + + + ++ L + W + L+ +
Sbjct: 244 NSKESVWENALNTMLKLTPPQSGEEISLLDLRWAALLHQLGKPASARWDENGLVNGYGIH 303
Query: 271 SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330
+ + ++ + + + +++ S ++++ + +L
Sbjct: 304 RDHSVRRSARVLQRLAFTKRRQRRILTMIQFMEMPFPPSERVLRRMINQNVPVEGVFRLL 363
Query: 331 IFLALHYNNLTHQDT----------CFILQVLSDIIHWKKPLFPLTGDDVVKY--GIPPG 378
A + + + Q+ + LTG D++ G PG
Sbjct: 364 RAKAEATQSNSPNEEQIQETFQNLMRRCKQIRERLNTPAPEELNLTGGDLIDLVRG-EPG 422
Query: 379 KKVGNILVHCKQEWINSSF-QLSQEDLHHLLRKLI 412
+ L H WI + + E L ++ +
Sbjct: 423 PWIQQ-LQHHLALWIQKDPRRNNPERLSEEVQNWV 456
>gi|134074841|emb|CAK38955.1| unnamed protein product [Aspergillus niger]
Length = 530
Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 67/478 (14%), Positives = 138/478 (28%), Gaps = 92/478 (19%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK---------------------- 65
GG VRD L+ + D+D+ + + + +
Sbjct: 48 LRFTGGWVRDKLLGVGSNDVDVGINNMTGYQFGLLLKEYMDRPENLEKYRQEQPNGELKH 107
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + P + T+ D+ LR + ++ + + D++R
Sbjct: 108 AIASLHKIEANPEKSKHLETVTTRIFGLDIDLVNLRKETYSEDSRNPQMEFGTAQEDAMR 167
Query: 120 RDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TINAL+ + +++ G D++ I+ + + +D LR+LR RF +
Sbjct: 168 RDATINALFYNLNESIVEDFTGRGLEDMKKEIIRTPMEPYQTFQDDPLRVLRLIRFASRL 227
Query: 178 GEKNIDSDGLVASIK--AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G + + +S ER+ EI K+L+ +P A+ + + G++ IF
Sbjct: 228 GYNIERETQEAMRNELIGEALKLKISRERVGKEIEKMLQGPDPRGALQFIDSLGLYPTIF 287
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKID------------SLLRFIVLISWQDKKSILSMAK 283
+ Q+ + S A E + L+R + + + +
Sbjct: 288 ANHQDDAQADTSSWALAYNALEKILKDETNAATVNVRQFLIRDKLESYYAWVIAAFAPWS 347
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM------------------ 325
S+ K + GD
Sbjct: 348 SIPSRVARGPKAKPLPARTAEVARDSLRADNKTIAVIGDAAHNWQAITDVKNSVLEGRMD 407
Query: 326 -------------------IAKLKIFLALHYNNLTHQDTCFILQVLSDI----------I 356
+L I L++ + + +LQ
Sbjct: 408 GTAAEARQQVGLHIRSWKKDWRLCILLSILQEIMRGGEFTSVLQSYDRFLSYIKEQDLQD 467
Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
++ G+ V G G + L + + +E + L +
Sbjct: 468 AFELKPLANGGEIVKALGCKTGPWMSKALDMSIKWQLLHPEVTDKEKVLEELSRRKEE 525
>gi|62947202|gb|AAY22598.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947204|gb|AAY22599.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947206|gb|AAY22600.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947208|gb|AAY22601.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947210|gb|AAY22602.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947212|gb|AAY22603.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947214|gb|AAY22604.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947216|gb|AAY22605.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947218|gb|AAY22606.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947220|gb|AAY22607.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947222|gb|AAY22608.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947224|gb|AAY22609.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947226|gb|AAY22610.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947228|gb|AAY22611.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947230|gb|AAY22612.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947232|gb|AAY22613.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947234|gb|AAY22614.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947236|gb|AAY22615.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947240|gb|AAY22617.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947242|gb|AAY22618.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947254|gb|AAY22624.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947256|gb|AAY22625.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947258|gb|AAY22626.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947260|gb|AAY22627.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947262|gb|AAY22628.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947264|gb|AAY22629.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947266|gb|AAY22630.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947268|gb|AAY22631.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947270|gb|AAY22632.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947272|gb|AAY22633.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947276|gb|AAY22635.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947278|gb|AAY22636.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947280|gb|AAY22637.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947282|gb|AAY22638.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947284|gb|AAY22639.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947286|gb|AAY22640.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947288|gb|AAY22641.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947290|gb|AAY22642.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947292|gb|AAY22643.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947294|gb|AAY22644.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947296|gb|AAY22645.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947298|gb|AAY22646.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947300|gb|AAY22647.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947302|gb|AAY22648.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947304|gb|AAY22649.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947306|gb|AAY22650.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947308|gb|AAY22651.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947310|gb|AAY22652.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947312|gb|AAY22653.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947314|gb|AAY22654.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947316|gb|AAY22655.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947318|gb|AAY22656.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947320|gb|AAY22657.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947322|gb|AAY22658.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947324|gb|AAY22659.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947326|gb|AAY22660.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947328|gb|AAY22661.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947330|gb|AAY22662.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947332|gb|AAY22663.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947334|gb|AAY22664.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947336|gb|AAY22665.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947338|gb|AAY22666.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947340|gb|AAY22667.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947342|gb|AAY22668.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947344|gb|AAY22669.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947346|gb|AAY22670.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
Length = 263
Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 68/171 (39%), Gaps = 20/171 (11%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVM--------RIFSKTRYKVIPTSI---- 75
I GG VRD L+ D+DIA + ++ + ++K K
Sbjct: 63 LRITGGWVRDKLLGQGSHDLDIAINVMSGEQFATGLNEYLQQHYAKYGAKPHNIHKIDKN 122
Query: 76 ----SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ T D LRS+ T+ V + D+LRRD T+NAL+ +
Sbjct: 123 PEKSKHLETATTKLFGVEVDFVNLRSEKYTELSRIPKVCFGTPEEDALRRDATLNALFYN 182
Query: 131 QQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
++ GL DL++ ++ A L+D LR+LR RF + +
Sbjct: 183 IHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRFNF 233
>gi|169775845|ref|XP_001822389.1| poly(A) polymerase [Aspergillus oryzae RIB40]
gi|83771124|dbj|BAE61256.1| unnamed protein product [Aspergillus oryzae]
Length = 567
Score = 73.7 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 66/474 (13%), Positives = 131/474 (27%), Gaps = 96/474 (20%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK---------------------- 65
GG VRD L+ + DID+ + + +
Sbjct: 83 LRFTGGWVRDKLLGIDSHDIDVGINNMTGYQFGLLLKDYLDIPENLQKYKKNHNNGQLKD 142
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + P + T+ D+ LR + +D + + D++R
Sbjct: 143 AIVSLHKIEANPEKSKHLETVTTKIFGLDIDLVNLRKETYSDDSRNPQMEFGTAEEDAMR 202
Query: 120 RDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TINAL+ + ++ G D+R++ I+ + + +D LR+LR RF +
Sbjct: 203 RDATINALFYNLNESKVEDFTRRGFQDMRDQVIRTPMEPYQTFKDDPLRVLRLIRFASRL 262
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G + + K +S ER+ +E+ K+L+ +P A+ + ++ IF
Sbjct: 263 GYRIDEDTENAMKNKDISEALKLKISRERVGTEMMKMLKGPDPRGALQFIDRLELYPTIF 322
Query: 236 -------------LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282
+L +L D L+R + + +
Sbjct: 323 ANHQDDVGVDTSSWAPAYNALQKLLHPNNNSIPIARVRDLLIRDAQEAYYAWVIAAFAPW 382
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG--------------------- 321
S+ K L
Sbjct: 383 STVPDRVAQGPKPRPPPARAAEVARDSLRSDNKTINLLRDAARHWRSIVDVKSSLLQGRM 442
Query: 322 --------------------DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
D + L I + ++ Q LS ++
Sbjct: 443 SGTAAEIRQQIGLHIRTWSKDWRLCCTLAILQEVAQGGEFNKVIQEYNQFLSYLVEHDLE 502
Query: 362 -----LFPLTGDDVVKYGI--PPGKKVGNILVHCKQEWINS-SFQLSQEDLHHL 407
+ G + + + P G + L + + + L +
Sbjct: 503 NVYDMKPIVNGVE-IAQNLASPKGPWMSKALDMVIKWQLLHPEITDKAKALEEV 555
>gi|301093284|ref|XP_002997490.1| tRNA nucleotidyltransferase, putative [Phytophthora infestans
T30-4]
gi|262110632|gb|EEY68684.1| tRNA nucleotidyltransferase, putative [Phytophthora infestans
T30-4]
Length = 588
Score = 73.7 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 73/364 (20%), Positives = 132/364 (36%), Gaps = 23/364 (6%)
Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK-TRYKVIP---T 73
+ L + + + GG VRD L +DIDIA ++ + R +K R + +P
Sbjct: 68 IQQLYAPKTQLRVAGGWVRDKLRGAESEDIDIALDNLMGAKFARYITKFQRDRKLPPSSV 127
Query: 74 S---------ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ D+ LR++ T V + D+ RRD TI
Sbjct: 128 GVVKANSDKSKHLEVATVTIEGSTVDLVHLRAEEYTPDSRVPEVTFATPEDDASRRDLTI 187
Query: 125 NALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--- 179
NAL+ + + ++ G NDL+N I+ + L+D LR+LR RF +G
Sbjct: 188 NALFYNLHTRHVEDFTGKGVNDLKNGVIRTPREPVQTFLDDPLRVLRALRFACEFGFTLD 247
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+++ L + +S ERI E+ K+L +P+ A + + + +F D
Sbjct: 248 PALETAVLEQREIVGAMRRKVSRERIGIEVRKMLSGNDPVRAFGLLRKFYLLELVFND-S 306
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI--RYFLIS 297
L + E E + + L ++K +
Sbjct: 307 AGRLGEGEAYDEVEDNGFKYPPREWTESIQNRACHYLNYLQQSRKCDMSNVESTAAIFTP 366
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
F + + +++ + L+ FL + DT I+++L +
Sbjct: 367 LFLPKVPLIVPESHVQDEFVDVTEREIVESSLE-FLDHREAVVAALDTIEIVEMLKVHVK 425
Query: 358 WKKP 361
W KP
Sbjct: 426 WPKP 429
>gi|62947238|gb|AAY22616.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947244|gb|AAY22619.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947246|gb|AAY22620.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947248|gb|AAY22621.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947250|gb|AAY22622.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947252|gb|AAY22623.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
gi|62947274|gb|AAY22634.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae]
Length = 263
Score = 73.7 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 20/171 (11%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVM--------RIFSKTRYKVIPTSI---- 75
I GG VRD L+ D+DIA + ++ + ++K K
Sbjct: 63 LRITGGWVRDKLLGQGSHDLDIAINVMSGEQFATGLNEYLQQHYAKYGAKPHNIHKIDKN 122
Query: 76 ----SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ T D LRS+ + V + D+LRRD T+NAL+ +
Sbjct: 123 PEKSKHLETATTKLFGVEVDFVNLRSEKYIELSRIPKVCFGTPEEDALRRDATLNALFYN 182
Query: 131 QQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
++ GL DL++ ++ A L+D LR+LR RF + +
Sbjct: 183 IHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRFNF 233
>gi|78357126|ref|YP_388575.1| tRNA nucleotidyltransferase [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219531|gb|ABB38880.1| tRNA nucleotidyltransferase, putative [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 368
Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 63/387 (16%), Positives = 123/387 (31%), Gaps = 43/387 (11%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
++ +VGGAVRD L+ + ++ D + + + + + T
Sbjct: 7 QTFLVGGAVRDMLLGRTPREYDYVFSGSLEEFL--------------LRHKTA--RRAGT 50
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
F I R + D RDFT+NA+ D G++ + L DL
Sbjct: 51 QFSIAIYNGLEFAPMR------GKTIHEDLASRDFTVNAMALDADGRLFAHPEALRDLAL 104
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS--SERI 205
+ + +D +R+ R RF A +I +D A KI+ ERI
Sbjct: 105 HRLSPASSHA--LADDPVRLFRAARFTATLPGFHISADLKRAMRAEAGSGKIMDAAPERI 162
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265
SEI+K+L + P N + + + D + A+ + +
Sbjct: 163 GSEIHKVLHSARPGNFLRTLNEADCLTAWLQEFAPAEEDAAALHRTADIMDRAAGVPMAV 222
Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
++ L + + S + + + + I
Sbjct: 223 WMALCHDLNTGATQSPLPAAAPTPVRKQPQHHAAAPAARRFAMRIKAPNSFVRAAEVAAS 282
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD-----------VVKYG 374
K + + L + + + + + +TG D +++
Sbjct: 283 CHKEGMHYPALKAE-SRVSLLMRLHLAALLDDFFTFILAVTGSDFRRPAAEELDILLRVK 341
Query: 375 IPP-----GKKVGNILVHCKQEWINSS 396
+PP G + G +L + E + S
Sbjct: 342 LPPDQQGRGPESGRLLHRMRCEALQSR 368
>gi|238502497|ref|XP_002382482.1| tRNA nucleotidyltransferase [Aspergillus flavus NRRL3357]
gi|220691292|gb|EED47640.1| tRNA nucleotidyltransferase [Aspergillus flavus NRRL3357]
Length = 688
Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 67/475 (14%), Positives = 135/475 (28%), Gaps = 96/475 (20%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK---------------------- 65
GG VRD L+ + DID+ + + +
Sbjct: 202 LRFTGGWVRDKLLGIDSHDIDVGINNMTGYQFGLLLKDYLDIPENLQKYKKNHNNGQLKD 261
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ + P + T+ D+ LR + +D + + D++R
Sbjct: 262 AIVSLHKIEANPEKSKHLETVTTKIFGLDIDLVNLRKETYSDDSRNPQMEFGTAEEDAMR 321
Query: 120 RDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TINAL+ + ++ G D+R++ I+ + + +D LR+LR RF +
Sbjct: 322 RDATINALFYNLNESKVEDFTRRGFQDMRDQVIRTPMEPYQTFKDDPLRVLRLIRFASRL 381
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G + + K +S ER+ +E+ K+L+ +P A+ + ++ IF
Sbjct: 382 GYRIDEDTENAMKNKDISEALKLKISRERVGTEMTKMLKGPDPRGALQFIDRLELYPTIF 441
Query: 236 -------------LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282
+L +L D L+R + + +
Sbjct: 442 ANHQDDVGVDTSSWAPAYNALQKLLHPNNNSIPIARVRDLLIRDAQEAYYAWVIAAFAPW 501
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD--KVMIAKLKIFLALHYNNL 340
S+ K L D + + + + +L +
Sbjct: 502 STVPDRVAQGPKPRPPPARAAEVARDSLRSDNKTINLLRDAARHWRSIVDVKSSLLQGRM 561
Query: 341 THQDTCFILQVLSDIIHWKK-----PLFPL-----------TGDDVVKYG---------- 374
+ Q+ I W K + G+ + +Y
Sbjct: 562 SGTAAEIRQQIGLHIRTWSKDWRLCCTLAILQEVAQGGEFNKGEMIQEYNQFLSYLVEHD 621
Query: 375 ------IPP---------------GKKVGNILVHCKQEWINS-SFQLSQEDLHHL 407
+ P G + L + + + L +
Sbjct: 622 LENVYDMKPIVNGVEIAQNLASPKGPWMSKALDMVIKWQLLHPEITDKAKALEEV 676
>gi|328853364|gb|EGG02503.1| hypothetical protein MELLADRAFT_28635 [Melampsora larici-populina
98AG31]
Length = 206
Score = 73.3 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 21/174 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK----------------TRYKV 70
+ I GG VRD L+ + D+D+A ++ + + FS +
Sbjct: 4 EIRIAGGWVRDKLLGVESNDLDLAISSLTGTQFAQHFSNFISIHSNQKDLSLSKIAIIEA 63
Query: 71 IPTSISY-GTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALY 128
P + T D LR++ +D R + K D++RRD TINAL+
Sbjct: 64 RPDQSKHLETATSKFLNLELDFVQLRNESYHSDSRIPSDIRFGTPKEDAMRRDITINALF 123
Query: 129 ADQQGKVIDYVG--GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
+ I+ GL DL+N I+ A +D LR+LR RF + +G +
Sbjct: 124 YNIHNDQIEDQTELGLEDLKNGLIRTPLPALETFQDDPLRLLRCIRFSSRFGFR 177
>gi|167005417|ref|ZP_02271175.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni
81-176]
Length = 343
Score = 73.3 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 64/386 (16%), Positives = 120/386 (31%), Gaps = 48/386 (12%)
Query: 32 VGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90
VGG+VRD + L + D DI I P +I K + S+ +C+ K +D
Sbjct: 2 VGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKLGAQGF--GKSF----FVCKFKNYD 55
Query: 91 ITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147
+ R++ + D K + RRDFTIN++ + + +D+ GGL DL
Sbjct: 56 LALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGA 115
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
++ ED LR+LR F + + K + L
Sbjct: 116 GFLR--HIDKQSFQEDSLRVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELC 173
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267
+ K + + + + ++ + F L
Sbjct: 174 KFFKSPRLDVGYRYLQELGLEKQIFGFESVFMSL---EFQNLLRQSREFVKSDALFLYLY 230
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
+ +K +++ + + N F +S E+ K+ + K +
Sbjct: 231 LNFFNLEKDIFFKRT-------KLKKEYLKYANQAFYLDDISDFELAKIAFEMPLKEWLG 283
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
L + F ++L D + G GK +G L
Sbjct: 284 LWSKKRIEQAKRLGLYENKFESKIL--------------AKDFINAGF-CGKILGLKLQE 328
Query: 388 CKQEWINSSFQLSQEDLHHLLRKLIA 413
++ +L ++ L
Sbjct: 329 ARE-----------NELKEYIKGLAK 343
>gi|239907448|ref|YP_002954189.1| putative tRNA nucleotidyltransferase [Desulfovibrio magneticus
RS-1]
gi|239797314|dbj|BAH76303.1| putative tRNA nucleotidyltransferase [Desulfovibrio magneticus
RS-1]
Length = 391
Score = 73.3 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 46/281 (16%), Positives = 89/281 (31%), Gaps = 44/281 (15%)
Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+ V D D + P+ +R + + R ++ +
Sbjct: 4 YLVGGAVRDILLGRPVVDQDYLIVDATPEAFVRRYRRAR----QVGKTFPVFML------ 53
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN----D 144
D L RD TINA+ ++ + D
Sbjct: 54 ------------GSAQYAWPRGDSVAEDLLARDLTINAMAMGDSREIAGRLHFHPLALSD 101
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKILSS 202
LR+R ++ G + +D LR+ R RF A + + + + L + +
Sbjct: 102 LRDRWLRPCG--EMSMFDDPLRVYRAARFAASLPDFSPHPELVAQMRAVAACGVLGDVFA 159
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-----------ISLDQLSQVIE 251
ER+ E+ K L P + + G +++ +++
Sbjct: 160 ERVAQEVRKALGTTKPSRFFQLLADTGCLLPWLPELEAARHVPAGPPEHHDGSVFDHMLD 219
Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
+ D+L ++ + K + + R
Sbjct: 220 MVDIL--AGDALAGWMAVCHDLGKIATPECEWPRHHGHDDR 258
>gi|303249225|ref|ZP_07335461.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfovibrio fructosovorans JJ]
gi|302489365|gb|EFL49317.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfovibrio fructosovorans JJ]
Length = 390
Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 62/395 (15%), Positives = 116/395 (29%), Gaps = 57/395 (14%)
Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+ V D D + P+ +R + + R ++ +
Sbjct: 4 YLVGGAVRDILLGRPVMDQDYLIVDATPEAFVRRYRRAR----QVGKTFPVFML------ 53
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN----D 144
D D L RD TINA+ + + D
Sbjct: 54 ------------GSAQYAWPRGGDINEDLLARDLTINAIAMGDSRHIAGRLHFHPLALSD 101
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKILSS 202
LR+R ++ G + +D LR+ R RF A + + + L + +
Sbjct: 102 LRDRILRPCG--EMSMFDDPLRVYRAARFAASLPDFTAHPELIAQMRAVAACGALDDIFA 159
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
ER+ E+ K L+A P + G +++ E +
Sbjct: 160 ERVAQEVRKALDAAKPSRFFNLLAETGCLLPWMPELEAARNVPAGPPEHHEGSVFAHLCD 219
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
L+ + ++ K P + + + E+ K L
Sbjct: 220 LVDVLAGKPIAGWMAVCHDLGKTLTPESE----WPRHHGHDDVGADVAEELGKRLKLPNR 275
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF---PLT---GDD---VVKY 373
L + + +L+ + + +T G D + K
Sbjct: 276 VREAGVAAARLHMKAARYGELRAATRVDMLAWLHKHELVEPLFELVTADCGADVWPLAKR 335
Query: 374 GIP-------PGKK-V-----GNILVHCKQEWINS 395
+ PGK+ + G L + + +
Sbjct: 336 DLRLMLSVHLPGKQRMRGPVSGEKLRKLRCQKLAE 370
>gi|15806007|ref|NP_294707.1| tRNA nucleotidyltransferase [Deinococcus radiodurans R1]
gi|6458711|gb|AAF10560.1|AE001950_12 tRNA nucleotidyltransferase, putative [Deinococcus radiodurans R1]
Length = 374
Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 9/127 (7%)
Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFS 64
W +D LS + + +VGGAVRD+L+ + D+DI V +
Sbjct: 17 DRAWLND------LSRRAGPDTELALVGGAVRDALLGQTPLDLDIVVAGQDGQGVEALAL 70
Query: 65 KTRYKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
+ + ++ + + D+ R + D RRDF
Sbjct: 71 ASGLPFV-FHPAFENATLTLPDGRGADLVRARREHYPQPGRNPEPLPGTLHDDLRRRDFG 129
Query: 124 INALYAD 130
+NAL
Sbjct: 130 LNALALR 136
Score = 41.4 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHC 388
PLTG +VV G+ PG VG L H
Sbjct: 319 LPLTGREVVALGVAPGPAVGRALAHL 344
>gi|189423357|ref|YP_001950534.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Geobacter lovleyi SZ]
gi|189419616|gb|ACD94014.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Geobacter lovleyi SZ]
Length = 398
Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 55/284 (19%), Positives = 98/284 (34%), Gaps = 43/284 (15%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI------PTSISYGTIK 81
+ IVGG VRD L +DID+ + P+ + ++ + P +
Sbjct: 18 RIWIVGGTVRDVLNGKDGEDIDLDAVLTPEE----LASYGFRPVDPVTSAPIWFRH---- 69
Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141
I +IT+L D RRDFT+NA+ G+V+D GG
Sbjct: 70 -IPEIGKIEITSL-------------ASVDLLTDDLTRRDFTVNAMAMTLDGEVVDLFGG 115
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
+ DL + ++ D +RI R FRF + + D+ +++ + +K +
Sbjct: 116 IQDLGQKRLRACS--DVSFQGDPIRIFRAFRFESEEWRMDPDTTRMISDVSWEKSFSCIP 173
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS------LDQL-------SQ 248
ER E+ K L P +M + ++ ++ +D+
Sbjct: 174 VERFSREMVKALGKGEPERFFRNMVEMNVGSTYLPELFAMNTVPAGPIDKHPEGDLLTHS 233
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
+ ++ D L RF L K +
Sbjct: 234 LQVLQRTVGASNDPLARFCALFHDLGKLETDPELYPKHHGHDDA 277
>gi|229090598|ref|ZP_04221832.1| CCA-adding enzyme [Bacillus cereus Rock3-42]
gi|228692741|gb|EEL46466.1| CCA-adding enzyme [Bacillus cereus Rock3-42]
Length = 237
Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 55/235 (23%), Positives = 106/235 (45%), Gaps = 5/235 (2%)
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ +P + +GT+ ++ + +++TT R++ R + V F R + D RRDFT+NA
Sbjct: 6 RHVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
+ ++G+++D G ++ R I +G+A R ED LR++R RF + G ++++
Sbjct: 66 IAMTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLGF-SLETKT 124
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
A L+ ++ ERI E KLL + + + +F L ++S ++L
Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLF--SHLPYLQMSDERL 182
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+ + F + ++ S+ KFS + RY N
Sbjct: 183 LKATQYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWKFSNKKIKRYRRSFINNP 237
>gi|86150208|ref|ZP_01068435.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88597551|ref|ZP_01100785.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|85839324|gb|EAQ56586.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88190143|gb|EAQ94118.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|315928282|gb|EFV07598.1| poly A polymerase head domain protein [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315929249|gb|EFV08466.1| poly A polymerase head domain protein [Campylobacter jejuni subsp.
jejuni 305]
Length = 343
Score = 72.9 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 64/386 (16%), Positives = 128/386 (33%), Gaps = 48/386 (12%)
Query: 32 VGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90
VGG+VRD + L + D DI I P +I K + S+ + + K +D
Sbjct: 2 VGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKLGAQGF--GKSF----FVYKFKNYD 55
Query: 91 ITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147
+ R++ + D K + RRDFTIN++ + + +D+ GGL DL
Sbjct: 56 LALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGV 115
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
++ ED LR+LR F + + K + L
Sbjct: 116 GFLR--HIDKQSFQEDSLRVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINA--- 170
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267
E+ K ++ ++ G+ K++F + ++ + F L
Sbjct: 171 ELCKFFKSPRLDVGYRYLQELGLEKQVFGFESVFKSSEFQNLLRQSREFVKSDALFLYLY 230
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
+ +K +++ + + N F +S E+ K+ + K +
Sbjct: 231 LNFFNLEKDIFFKRT-------KLKKEYLKYANQAFYLDDISDFELAKIAFEMPLKEWLG 283
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
+ + ++ ++ + D + G GK +G L
Sbjct: 284 LW-----------SKKRIEQAKRLGLYENKFESKIL---AKDFINAGF-CGKILGLKLQE 328
Query: 388 CKQEWINSSFQLSQEDLHHLLRKLIA 413
++ +L ++ L
Sbjct: 329 ARE-----------NELKEYIKGLAK 343
>gi|302779730|ref|XP_002971640.1| hypothetical protein SELMODRAFT_412131 [Selaginella moellendorffii]
gi|300160772|gb|EFJ27389.1| hypothetical protein SELMODRAFT_412131 [Selaginella moellendorffii]
Length = 412
Score = 72.9 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 59/243 (24%), Positives = 96/243 (39%), Gaps = 24/243 (9%)
Query: 17 NILSLLN------KGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKT--- 66
IL L + + GG VRD L+ + D+DIA + + +
Sbjct: 12 KILDALRLAIRECDLKTDVRVAGGWVRDKLLGVESHDLDIALDDMTGQQFCDRVLRCLRK 71
Query: 67 --------RYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKAD 116
K P + T K+ D+ LRS+ ++ R + D
Sbjct: 72 TDPSCSYKVIKSNPERSKHLETTKLEILGGELDVVNLRSETYSNDSRIPTSMKFGTPSED 131
Query: 117 SLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
+ RRD TIN+L+ + ++ G DL+ I+ L+D LR+LR RF
Sbjct: 132 AYRRDLTINSLFYNVAADKVEDFTGRGVMDLKLGKIRTPLPPLVTFLDDPLRVLRSIRFA 191
Query: 175 AHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
A + + + +AS + K ++ ERI EI +L KNP A+ ++ G +
Sbjct: 192 ARFNFELDEELECMASADSVKAAFETKITRERISQEIQAMLFGKNPARAMCLLHKLGYWP 251
Query: 233 EIF 235
IF
Sbjct: 252 LIF 254
>gi|258591465|emb|CBE67766.1| putative Uncharacterized domain HDIG [NC10 bacterium 'Dutch
sediment']
Length = 503
Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 78/486 (16%), Positives = 145/486 (29%), Gaps = 97/486 (19%)
Query: 11 HDSDLINILS-LLNKGEDKSCIVGGAVRDSLMNL---SVQDIDIATTILPDRVMRIFSKT 66
+ L I++ + +VGG +RD L+ D+D+ P+R R +
Sbjct: 14 REPYLRAIVAVAASNRTGPLYLVGGYLRDLLLGRSRVRRADLDLVVWGEPERFGRNLVDS 73
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + T++ I RS +AD + RDFT+NA
Sbjct: 74 LEGSL-VRLDQETVRTII----------RSAGAIVQIDISRPKGETIEADLVARDFTVNA 122
Query: 127 LYADQQG----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
L +VID GGLNDL+ + ++ I + D LR++R R A I
Sbjct: 123 LAVRLDTLHPLRVIDPTGGLNDLKEKRLRAIAPSA--FDRDPLRLIRAVRLAAELDF-TI 179
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----- 237
+ + I+ L + ER+ E+ ++L+ I + + K + +
Sbjct: 180 EEHTRRSIIERAPLLGTAAGERLRDELFRILDTVPAAPWIEQLDVLQLLKVLVPEAEALK 239
Query: 238 -----------VQEISLDQLSQ----VIEAEQVFEWKIDSLL------------------ 264
+ E SL L + EQ+F L
Sbjct: 240 SVPASTPHRLPLWEHSLQTLWSIELLLAHLEQLFPEHALWLRERLDREIEAGVSETAILK 299
Query: 265 --------------------------RFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
+ + +
Sbjct: 300 LLTLLHDVGKPKTRSVQPDGRVRFLGHEQAGLPILAGLCDRLRLGRLATSLVAGIEQHHL 359
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV--LSDII 356
+ + T + F+ D + L A + F+ L +
Sbjct: 360 RPIHLSSATTVTARAQYRFFREADDAVPLVLLHSWADLRATFGGETEAFVRHQVFLREAF 419
Query: 357 HW-------KKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ + L GDD+++ + I PG +G++L ++ E L
Sbjct: 420 RFYRTEFLTSQVKPILRGDDLIETFNIVPGPFLGSVLDRLQEAQATGLIASRGEAL-TYA 478
Query: 409 RKLIAS 414
++ + S
Sbjct: 479 QEHLES 484
>gi|212530828|ref|XP_002145571.1| tRNA nucleotidyltransferase [Penicillium marneffei ATCC 18224]
gi|210074969|gb|EEA29056.1| tRNA nucleotidyltransferase [Penicillium marneffei ATCC 18224]
Length = 534
Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 71/476 (14%), Positives = 148/476 (31%), Gaps = 95/476 (19%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT------------------------ILPDRVM---R 61
GG VRD L+ +S DID+A + +
Sbjct: 51 LRFTGGWVRDKLLGVSSHDIDVAISTMTGLRFGTYLQEYLEESDNLKKYMNNKEFAFTDE 110
Query: 62 IFSKTRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+ K P + T+ D+ LR + T+ V K D+LRR
Sbjct: 111 MLKVHTIKANPEKSKHLETVTTRLFGLDIDLVNLRKETYTELSRNPQVEFGTAKEDALRR 170
Query: 121 DFTINALYADQQGKVIDYVG--GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
D T+NAL+ + +++ GL+D+ + I+ + + +D LR+LR RF + G
Sbjct: 171 DATVNALFFNLNTSMLEDFTGLGLDDMERKLIRTPLEPYQTFKDDPLRVLRLIRFASRLG 230
Query: 179 EKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ + K +S ER+ E+ K L +P + ++ + G++ IF
Sbjct: 231 YHIDEKTQEAMQDEDIKKAFKLKISKERVGIEMEKTLRGPDPRIGLKYIDDLGLYTTIFA 290
Query: 237 DVQEI-----------------------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQ 273
+ + D+L Q+ +++ + +++
Sbjct: 291 NQHDDVEASTTSWSLAYDALDRILNRIRKTDELQQIKHIKKILVRDEEEFYAWVMAAFVP 350
Query: 274 DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA------ 327
I N + + +K L+ + +
Sbjct: 351 WVAVPARKPGPKKEKPPIIPRAAEVARDNLRMENKIVNALKDAAELFKEVSALKSSVILN 410
Query: 328 ------------------------KLKIFLALHYNNLTHQDTCFILQVLSDIIH-WKKPL 362
+L + +AL ++ + Q + +K
Sbjct: 411 SIPGTAAEVRQHVGLQVRSWKKDWRLIVLMALLQEIAAGVESRKVFQEFDAFLSYLEKED 470
Query: 363 F-------PL-TGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
P+ G +V + +P G+ + + L + + ++ +L+
Sbjct: 471 LLEVTELRPIANGKEVSAAFELPNGRWLASALEMLIRWQLLHPHNTDKDQALEVLK 526
>gi|302764532|ref|XP_002965687.1| hypothetical protein SELMODRAFT_84963 [Selaginella moellendorffii]
gi|300166501|gb|EFJ33107.1| hypothetical protein SELMODRAFT_84963 [Selaginella moellendorffii]
Length = 231
Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/203 (23%), Positives = 74/203 (36%), Gaps = 29/203 (14%)
Query: 1 MVSIVQHKWFHDSDLINILSLLN------KGEDKSCIVGGAVRDSLMNLSVQDIDIATTI 54
M +IV + IL L + + + GG VRD L+ + D+DIA
Sbjct: 1 MATIV----LTREEA-KILDALRLAIRKCDLKTEVRVAGGWVRDKLLGVESHDLDIALDG 55
Query: 55 -LPDRVMRI----FSKTR-------YKVIPTSISY-GTIKIICRKKYFDITTLRSDLITD 101
+ KT K P + T K+ D+ LRS+ ++
Sbjct: 56 MTGQQFCDRVLPCLRKTDPSCSYKVIKSNPERSKHLETTKLEILGGELDVVNLRSETYSN 115
Query: 102 G-RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG----GLNDLRNRTIKFIGDA 156
R + D+ RRD TIN+L+ + ++ DL+ I+
Sbjct: 116 DSRIPTSMKFGTPSEDAYRRDLTINSLFYNVAADKVEDFTGRGLCAMDLKLGKIRTPLPP 175
Query: 157 HHRILEDYLRILRFFRFFAHYGE 179
L+D LR+LR RF A +
Sbjct: 176 LVTFLDDPLRVLRSIRFAARFNF 198
>gi|325295446|ref|YP_004281960.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065894|gb|ADY73901.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfurobacterium thermolithotrophum DSM 11699]
Length = 482
Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 84/473 (17%), Positives = 142/473 (30%), Gaps = 102/473 (21%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMN--LSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ + +K+ +VGG VRD L+ DIDI T +V SK T
Sbjct: 13 PVIEKIESCFEKAYLVGGFVRDKLLGISKDTVDIDIVTVDELLKVKECISKVLKASSFTF 72
Query: 75 ISYGTI-KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA---- 129
T+ + K DI+ L + + D L+RDFTINA+
Sbjct: 73 EKEKTVITFLSDKFRLDISNL--------------HGKTLEEDLLKRDFTINAIAVDLKK 118
Query: 130 -----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ +ID GG DL+ R I+ I + R +D +RI+R RF + +
Sbjct: 119 LFSSSNDYIFLIDPFGGFEDLKKRLIRPINEKSLR--DDPVRIIRGVRFKI-LLQFDYHP 175
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------ 238
L S K + LK +ERI E+ K+L A+ GIF +F ++
Sbjct: 176 SFLNYSKKILEKLKESPTERIKEELIKILRIDKTSEALKDFNYIGIFPLVFPELVSLESV 235
Query: 239 -------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD----------------- 274
+ L V E+ + D +L Q+
Sbjct: 236 YPSGVHEYNLKEHTLKTVEFFEKFCLKEKDKILLEFSEKVGQNELLPTLLDSHFLKLVAL 295
Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
+ + + ++ + K G KV+ L+ F
Sbjct: 296 YHDVGKPSTVNKRNGRLTFYNHDKVGAKITKDAFLRLGFGKKAASLGFKVIKNHLRPFFL 355
Query: 335 LHYNNLTHQDTCFILQVLSDII-------------------------------------- 356
I +
Sbjct: 356 YELFKKEKLSDKAIYNFFKNAEPYSFHTLLHSVADWMATSKKMECEVSNFIKFIHFLLRF 415
Query: 357 ---HWKKPLFPLTGDDVVKY-GI-PPGKKVGNILVHCKQEWINSSFQLSQEDL 404
+ L+G ++++ G P K VG I + + ++ +
Sbjct: 416 YRERLENLKPLLSGKEIMEIKGFDKPNKYVGKIKEKLLELQAIGKVKTVKDAV 468
>gi|213857863|ref|ZP_03384834.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. M223]
Length = 56
Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIA 51
+ + +L LNK ++ +VGG VRD L+ +D D+
Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVT 56
>gi|330881710|gb|EGH15859.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae
pv. glycinea str. race 4]
Length = 135
Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 55/144 (38%), Gaps = 14/144 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--DMLVK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLN 143
+ R++ + Y VF + D +RRD TINA+ D+ G + D G
Sbjct: 55 NEEYALARTERKSGVGYGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQK 114
Query: 144 DLRNRTIKFIGDAHHRILEDYLRI 167
DL R ++ + ED LR+
Sbjct: 115 DLEARILRHV---SPAFAEDPLRV 135
>gi|82753230|ref|XP_727593.1| tRNA nucleotidyltransferase mitochondrial precursor [Plasmodium
yoelii yoelii str. 17XNL]
gi|23483513|gb|EAA19158.1| tRNA nucleotidyltransferase, mitochondrial precursor [Plasmodium
yoelii yoelii]
Length = 772
Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 60/312 (19%), Positives = 109/312 (34%), Gaps = 18/312 (5%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICR-- 85
+VGG VRD +N+S DID+ + + + ++G IKI C
Sbjct: 206 LRVVGGWVRDKFLNISNDDIDVTVDNMKGSDFCNYIKEYIKDKENKNFNFGIIKINCDQS 265
Query: 86 -----------KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
DI LR++ T+ + + D+LRRDFTIN+L+ + + K
Sbjct: 266 KHLETSSFNLFNFQVDIVNLRNEKYTEESRIPEISIGTVEEDALRRDFTINSLFYNLKNK 325
Query: 135 VIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
I+ G+ LRN I + L+D LRI+R RF ++ S V +
Sbjct: 326 KIEDYTKNGIFHLRNXIISTPLNPLTTFLDDPLRIIRCIRFCGYFDFNLNKSIFDVLKNE 385
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252
K + + + IV + ++ ++ D Q E
Sbjct: 386 DIKKSFNKKISKSRLASEIIKIFSHKCKNIVLSLTLLNYSNYSKEIFKLPTDYFVQNDEI 445
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
+ + K + + + + F +E+ + + N + +
Sbjct: 446 FEKMKKKKNHKIDNHSYYDTNEMVNKRVHL--FEDSKEVHQNVEKSISEYINDEDNNRTY 503
Query: 313 IKKLFYLYGDKV 324
+ K G+
Sbjct: 504 LNKNGDRNGENA 515
>gi|149248981|ref|XP_001528831.1| hypothetical protein LELG_05772 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146453335|gb|EDK47591.1| hypothetical protein LELG_05772 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 565
Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 79/376 (21%), Positives = 131/376 (34%), Gaps = 40/376 (10%)
Query: 3 SIVQHKWFHDSDLINILSLL-------NKGEDK---SCIVGGAVRDSLMNLSVQDIDIAT 52
S+ QH + I +LL K I GG VRD L+ QDIDIA
Sbjct: 47 SMKQHTILLNDSEQKIRNLLVGYCDYYRNQGGKPLTLRITGGWVRDKLLCNESQDIDIAI 106
Query: 53 T-ILPDRVMRIFSK--------------TRYKVIPTSISY-GTIKIICRKKYFDITTLRS 96
+L + K+ P + T D LRS
Sbjct: 107 DHLLGVDFVNGLQNYLIEQDPEMSMRHVHTIKMNPLKSKHLETCTTKLYDIDLDFVNLRS 166
Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIG 154
+ T+ V+ K D++RRD T+NAL+ + + I+ G DL++ ++
Sbjct: 167 EEYTEESRVPVIEFGTPKEDAMRRDATLNALFYNLNEQKIEDFTGKGLQDLQDGVLRTPL 226
Query: 155 DAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASIKAKKGLKILSSERIWSEINKL 212
L+D LRILR RF + K + ++ K +S ERI E+ K
Sbjct: 227 SPVKTFLDDPLRILRLIRFACKFDFKIEKKTLEAMMELHNQKALSTKISKERIEIELRKA 286
Query: 213 LEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW 272
L +KNP + +Y+ + K IF V + D+ + +++ LL + +
Sbjct: 287 LVSKNPSYGLRLIYHCNLVKSIFY-VDGLGFDETAMKHSVKRIPHH----LLAASAIYPY 341
Query: 273 QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
+++ S F + S K V L++
Sbjct: 342 FEQQIHKSTIHMLRALEIFDDDSKFNFWLSMILHPYSTVPRVKN-----KDVYDQFLRVG 396
Query: 333 LALHYNNLTHQDTCFI 348
L +++ +
Sbjct: 397 LKCKKSDINKISAINL 412
>gi|70953437|ref|XP_745820.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526260|emb|CAH76727.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 638
Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 71/369 (19%), Positives = 133/369 (36%), Gaps = 28/369 (7%)
Query: 16 INILSLLNKGEDK------SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRY 68
+ + L K ++ +VGG VRD +N+S DIDI + +
Sbjct: 68 LELFEFLMKVNEQYKLDTTLRVVGGWVRDKFLNISNDDIDITVDNMKGSDFCNYIKEYIK 127
Query: 69 KVIPTSISYGTIKIICR-------------KKYFDITTLRSDLITDGRYAKVVFTRDWKA 115
+ ++G IKI C DI LR++ T+ + +
Sbjct: 128 DKENKNFNFGIIKINCDQSKHLETSSFNLFNFQVDIVNLRNETYTEESRIPEIAIGTPEE 187
Query: 116 DSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
D+LRRDFTIN+L+ + + K ++ G++ L+N+ I + L+D LRI+R RF
Sbjct: 188 DALRRDFTINSLFYNLKNKKVEDYTKNGIHHLKNQIISTPLNPLTTFLDDPLRIIRCIRF 247
Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
++ S V + K + + + IV +
Sbjct: 248 CGYFDFNLDQSIFDVLKNEDIKKSFNKKISKSRLASEIIKIFSHKCKNIVLSLTLLNYSN 307
Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI-R 292
++ ++ D I+ E+VFE I ++ + F +EI +
Sbjct: 308 YSEEIFKLPSDYF---IQNEEVFEKMKKKKNHKIEDHWYETNGVVNKRVHLFEDSKEIDK 364
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH--QDTCFILQ 350
S ++ + + D I +F L+Y + + + Q
Sbjct: 365 NLDKSIDEYVGHKDSSKDDNKIESLENLKDDRNIENDWLFEGLNYVKFFKDIEKSELLKQ 424
Query: 351 VLSDIIHWK 359
+L D+ + +
Sbjct: 425 ILCDLDYKE 433
>gi|237751938|ref|ZP_04582418.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Helicobacter winghamensis ATCC BAA-430]
gi|229376697|gb|EEO26788.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Helicobacter winghamensis ATCC BAA-430]
Length = 415
Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 66/338 (19%), Positives = 111/338 (32%), Gaps = 23/338 (6%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD L+ L ++D D + K S+ + +K
Sbjct: 9 KIYLVGGAVRDGLLKLPIKDKDYVAVGFSEEDFAHLPK-------VGKSFP---VFLQKD 58
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTINALYADQQGK-VIDYVGGLN 143
I R + T Y D RRD T+NA+ D+ + D G
Sbjct: 59 GSQIALARREKKTQHGYNGFSIETQQVSLYEDLKRRDLTLNAIAFDETTQTYYDPFNGKK 118
Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNIDSDGLVASIKAKKGLKILSS 202
DL N+ ++ I ED LR+LR R A G I V K + L L
Sbjct: 119 DLENKILRHI---SEAFCEDPLRVLRAARLRARLGMEWKIHQSTKVLIYKMRDELCYLEK 175
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
R++ E+ L +N ++ G+ IF + ++ + + E
Sbjct: 176 NRVYKEVESALLGQNSHLFFESLFELGVLDMIFPSIYALTTLKEGNLHHLEASVFAHTME 235
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
+L+ + IL A + + N + +I
Sbjct: 236 VLKHTDSQKNTKQCLILKFAALYHD-----IAKPYCYRNFGNSQGHDNLKIIAPLLDISI 290
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
I K + L ++ + + + + +KK
Sbjct: 291 PNAIKKPMLLLIQNHIKIYLLPQMRLSKCVKFFDSYKK 328
>gi|149249021|ref|XP_001528850.1| hypothetical protein LELG_05760 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146453323|gb|EDK47579.1| hypothetical protein LELG_05760 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 535
Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 79/376 (21%), Positives = 131/376 (34%), Gaps = 40/376 (10%)
Query: 3 SIVQHKWFHDSDLINILSLL-------NKGEDK---SCIVGGAVRDSLMNLSVQDIDIAT 52
S+ QH + I +LL K I GG VRD L+ QDIDIA
Sbjct: 17 SMKQHTILLNDSEQKIRNLLVGYCDYYRNQGGKPLTLRITGGWVRDKLLCNESQDIDIAI 76
Query: 53 T-ILPDRVMRIFSK--------------TRYKVIPTSISY-GTIKIICRKKYFDITTLRS 96
+L + K+ P + T D LRS
Sbjct: 77 DHLLGVDFVNGLQNYLIEQDPEMSMRHVHTIKMNPLKSKHLETCTTKLYDIDLDFVNLRS 136
Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIG 154
+ T+ V+ K D++RRD T+NAL+ + + I+ G DL++ ++
Sbjct: 137 EEYTEESRVPVIEFGTPKEDAMRRDATLNALFYNLNEQKIEDFTGKGLQDLQDGVLRTPL 196
Query: 155 DAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASIKAKKGLKILSSERIWSEINKL 212
L+D LRILR RF + K + ++ K +S ERI E+ K
Sbjct: 197 SPVKTFLDDPLRILRLIRFACKFDFKIEKKTLEAMMELHNQKALSTKISKERIEIELRKA 256
Query: 213 LEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW 272
L +KNP + +Y+ + K IF V + D+ + +++ LL + +
Sbjct: 257 LVSKNPSYGLRLIYHCNLVKSIFY-VDGLGFDETAMKHSVKRIPHH----LLAASAIYPY 311
Query: 273 QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
+++ S F + S K V L++
Sbjct: 312 FEQQIHKSTIHMLRALEIFDDDSKFNFWLSMILHPYSTVPRVKN-----KDVYDQFLRVG 366
Query: 333 LALHYNNLTHQDTCFI 348
L +++ +
Sbjct: 367 LKCKKSDINKISAINL 382
>gi|323451929|gb|EGB07805.1| hypothetical protein AURANDRAFT_27394 [Aureococcus anophagefferens]
Length = 237
Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/188 (22%), Positives = 68/188 (36%), Gaps = 19/188 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-----ILPDRVMRIFSK 65
+ + + I GG VRD + +D+D+A RV +
Sbjct: 21 EAELVEVLCAAAAPTGTTVRICGGWVRDKALGRVTKDVDVALDNVSGAAFAARVSEALAA 80
Query: 66 TR---------YKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGR--YAKVVFTRDW 113
P + T + D LRS+ D +
Sbjct: 81 RGGDRGSNIGVIAANPEQSKHLETATMRLCGIEVDFVNLRSESYADAGDTRIPTMTFGTP 140
Query: 114 KADSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171
+ D+LRRDFT+NAL+ + + I+ G +DLR ++ + +L+D LR LR
Sbjct: 141 EQDALRRDFTLNALFFNVHSRAIEDYTKRGWDDLRTGIMRTPLEPRVTLLDDPLRALRGV 200
Query: 172 RFFAHYGE 179
RF + Y
Sbjct: 201 RFASRYCF 208
>gi|282856046|ref|ZP_06265333.1| multifunctional CCA protein [Pyramidobacter piscolens W5455]
gi|282586128|gb|EFB91409.1| multifunctional CCA protein [Pyramidobacter piscolens W5455]
Length = 414
Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/249 (18%), Positives = 88/249 (35%), Gaps = 14/249 (5%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84
+ +VGG VRD L+ +D D + + R F V + +
Sbjct: 14 GGQLYVVGGWVRDRLIGRPAEDRDYVVCGLDAATLEREFQ-----VRAVGRQFPVYLLEV 68
Query: 85 RKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140
+ ++ R++ G A+ + D RRD +N++ G +
Sbjct: 69 GGRLSEVALARTERKTGTGYRGFEARFSPDTTIEEDLYRRDTRMNSMAVRLPGGELIDPF 128
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200
G R + +D +R LR R A G +I + ++ L +
Sbjct: 129 GGRADIERRVISA--TSEHFRDDPVRALRAARQAAQLGF-SIAPGTVRLMSACREELALE 185
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA-EQVFEWK 259
+ER+++E+ K L + P + + + GI +F ++ + + FE
Sbjct: 186 PTERVFAEMRKALASPRPELFFIALRDAGILDAVFPELTALDGVEQPAKYHRGLDAFEHS 245
Query: 260 IDSLLRFIV 268
++ L R
Sbjct: 246 LEVLRRTAA 254
>gi|284044978|ref|YP_003395318.1| polynucleotide adenylyltransferase region [Conexibacter woesei DSM
14684]
gi|283949199|gb|ADB51943.1| Polynucleotide adenylyltransferase region [Conexibacter woesei DSM
14684]
Length = 448
Score = 71.0 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 2/149 (1%)
Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90
+VGGAVRD L+ D+D+ V + + +GT + +D
Sbjct: 32 VVGGAVRDLLLGGQPLDLDLVVDGDVVAVASRLADGLGGELQVHDRFGTATVTAGGCSYD 91
Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150
+ R++ V D RRDFT+NA+ G+ +DL R +
Sbjct: 92 LVRARAETYARPGALPDVRPGTLAEDLRRRDFTVNAIAVTLGGRFETVPEAFDDLVARRL 151
Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGE 179
+ + +D R+LR R+ G
Sbjct: 152 RVLH--DASFRDDPTRLLRLVRYATRLGF 178
>gi|315931203|gb|EFV10175.1| poly A polymerase head domain protein [Campylobacter jejuni subsp.
jejuni 327]
Length = 343
Score = 71.0 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 62/386 (16%), Positives = 120/386 (31%), Gaps = 48/386 (12%)
Query: 32 VGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90
VGG+VRD + L + D DI I +I K + S+ + + K +D
Sbjct: 2 VGGSVRDLFLGLKICDYDIELYDIKLKDFEKIMQKLGAQGF--GKSF----FVYKFKNYD 55
Query: 91 ITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147
+ R++ + D K + RRDFTIN++ + + +D+ GGL DL
Sbjct: 56 LALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGA 115
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
++ ED LR+LR F + + K + L
Sbjct: 116 GFLR--HIDKQSFQEDSLRVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELY 173
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267
+ K + + + + + ++ + F L
Sbjct: 174 KFFKSPRLDVGYRYLQELGLEKQVFGFESVFKSL---EFQNLLRQSREFVKSDALFLYLY 230
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
+ +K +++ + + N F +S E+ K+ + K +
Sbjct: 231 LNFFNLEKDIFFKRT-------KLKKEYLKYANQAFYLDDISDFELAKIAFEMPLKEWLG 283
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
L + F ++L D + G GK +G L
Sbjct: 284 LWSKKRIEQAKRLGLYENKFESKIL--------------AKDFINAGF-CGKILGLKLQE 328
Query: 388 CKQEWINSSFQLSQEDLHHLLRKLIA 413
++ +L ++ L+
Sbjct: 329 ARE-----------NELKEYIKGLVK 343
>gi|221487856|gb|EEE26088.1| poly(A) polymerase, putative [Toxoplasma gondii GT1]
Length = 735
Score = 71.0 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 39/127 (30%), Gaps = 15/127 (11%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVM----RIFSKTRYKVIPTS--------- 74
GG VRD LMN DIDIA +
Sbjct: 43 LRAAGGWVRDKLMNRRSDDIDIAIDKCTGVEFATNLNKWLRAQGLPTHAIGVVASNPDQS 102
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
T D LR++ R + + D+ RRDFT+NAL+ +
Sbjct: 103 KHLETATCRLAHHQVDFVHLRTETYSEHSRIPENIGFGTPAEDAHRRDFTLNALFYNLHT 162
Query: 134 KVIDYVG 140
K ++
Sbjct: 163 KKVENFT 169
>gi|317050443|ref|YP_004111559.1| polynucleotide adenylyltransferase region [Desulfurispirillum
indicum S5]
gi|316945527|gb|ADU65003.1| Polynucleotide adenylyltransferase region [Desulfurispirillum
indicum S5]
Length = 502
Score = 71.0 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 71/485 (14%), Positives = 140/485 (28%), Gaps = 88/485 (18%)
Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFS 64
+W + L I + L I GG VRD L + D+D + + +
Sbjct: 11 DEQWLLQT-LQEIGTSLGGHG--VRIAGGWVRDHLRGIVTSDMDVLLLNMDAEAFAERLQ 67
Query: 65 KTRYKVIPT-------SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
+ Y + T+++ + + + G + D+
Sbjct: 68 QRGYGSRHIIEPKPAQARMARTVRVCLSLPSGERFEVDLGTLATG--DGESLDEALRQDA 125
Query: 118 LRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
RD TINAL+ D ++ G +DLR ++ G + +D LR+LR RF A
Sbjct: 126 AGRDLTINALFYDPATATVEDRTGQGLDDLRRGLLRVPGARRCNLWDDPLRLLRIARFHA 185
Query: 176 HYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
G + + ++ ++ S ERI E+ + A+ +++ G+
Sbjct: 186 TTGFAVEAQTRCLMDDRQLQQRLVRCTSPERIGQELLAMWSHPRGSRAMELLHDCGVLDA 245
Query: 234 IFLDVQEIS--LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD----------------- 274
+ L Q ++QL+ + ++ I ++
Sbjct: 246 LLLASQGEGELVEQLASWDMDQGNGHHALNLWQHSIAAMACMGGQQADADRQTLALLQAA 305
Query: 275 -------------------------------KKSILSMAKKFSLPREIRYFLISFFNCNF 303
+ S+ L R L + +
Sbjct: 306 ALLHDVGKRYRPLWGEKEGVGRTYHAHEHTSAHMVQSLCIWLCLGRRFCESLCALVRAHM 365
Query: 304 NQ---KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK- 359
K P +++ ++ + + L+ Q + VLS + +
Sbjct: 366 LPSGLKDAKDPALRRFLRRMAEEGVQWRSVFALSHCDILAKGQADEQLAPVLSQLASLEQ 425
Query: 360 ---------------KPLFPLTGDDVVKY--GIPPGKKVGNILVHCKQEWINSSFQLSQE 402
L G +++ G VG +L + S E
Sbjct: 426 RLEGLEAQAASLGTPIGRPVLNGRQIMEVFGNSTAGPWVGEVLQALLEMQDTEPAMDSAE 485
Query: 403 DLHHL 407
L
Sbjct: 486 AARRL 490
>gi|237830923|ref|XP_002364759.1| tRNA nucleotidyltransferase, putative [Toxoplasma gondii ME49]
gi|211962423|gb|EEA97618.1| tRNA nucleotidyltransferase, putative [Toxoplasma gondii ME49]
gi|221507642|gb|EEE33246.1| poly(A) polymerase, putative [Toxoplasma gondii VEG]
Length = 735
Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 39/127 (30%), Gaps = 15/127 (11%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVM----RIFSKTRYKVIPTS--------- 74
GG VRD LMN DIDIA +
Sbjct: 43 LRAAGGWVRDKLMNRRSDDIDIAIDKCTGVEFATNLNKWLRAQGLPTHAIGVVASNPDQS 102
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
T D LR++ R + + D+ RRDFT+NAL+ +
Sbjct: 103 KHLETATCRLAHHQVDFVHLRTETYSEHSRIPENIGFGTPAEDAHRRDFTLNALFYNLHT 162
Query: 134 KVIDYVG 140
K ++
Sbjct: 163 KKVENFT 169
>gi|149003213|ref|ZP_01828109.1| polyA polymerase family protein [Streptococcus pneumoniae
SP14-BS69]
gi|147758673|gb|EDK65670.1| polyA polymerase family protein [Streptococcus pneumoniae
SP14-BS69]
Length = 126
Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNI 384
I L L + I + + K + GD ++K YG PG +G I
Sbjct: 39 IDLLLQAENLRQAQGKEVNLQAITEKYQSLTIHDKKEIQINGDILIKEYGYQPGPDLGEI 98
Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRK 410
L + ++ + ++E +H LR+
Sbjct: 99 LTEIEFAIVDGELENNREAIHAYLRE 124
>gi|256544466|ref|ZP_05471839.1| polyA polymerase family protein [Anaerococcus vaginalis ATCC 51170]
gi|256399791|gb|EEU13395.1| polyA polymerase family protein [Anaerococcus vaginalis ATCC 51170]
Length = 216
Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 57/139 (41%), Gaps = 7/139 (5%)
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA-- 334
I + K+ P++ + + N T + ++KL GD+ + + A
Sbjct: 68 IKNRLKELKYPKKFIENTLLLVERHMDNTNTYTKKSVRKLLRKVGDENIYDLFDLQKADV 127
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390
L + ++ ++L +I++ P +G+D+++ G GK++G IL
Sbjct: 128 LSTVHDNTENILNAKKLLEEILNSNTPRKKDQIDFSGNDLIEIGFKEGKELGEILNEVYN 187
Query: 391 EWINSSFQLSQEDLHHLLR 409
++ + + ++ ++
Sbjct: 188 LVMDEKLENKKSEIVKYIK 206
>gi|152990477|ref|YP_001356199.1| RNA nucleotidyltransferase [Nitratiruptor sp. SB155-2]
gi|151422338|dbj|BAF69842.1| RNA nucleotidyltransferase [Nitratiruptor sp. SB155-2]
Length = 392
Score = 70.6 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 71/399 (17%), Positives = 139/399 (34%), Gaps = 42/399 (10%)
Query: 13 SDLINILSLLNKG----EDKSCIVGGAVRDSL---MNLSV---QDIDIATTI-LPDRVMR 61
L L +L K D+ +VGGAVRD + + D+DI P
Sbjct: 20 KHLQKELDILKKFFLDKSDRVYMVGGAVRDLIRIVLEKQPIAIVDLDIEVYGIKPKEFDA 79
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFT--RDWKADSLR 119
+ + K S+ + K++ DI+ R + + V +D K+ S+R
Sbjct: 80 LMLQLGAK--GVGKSFF---VYKYKEHIDISLPRIESKVGRGHKAFVVDLAKDEKSASIR 134
Query: 120 RDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178
RDF +NAL + +++D+ GG+ D++++ I I + ED LR+LR +F A +G
Sbjct: 135 RDFKMNALMLNIFTGELLDFWGGVEDIKHKRISII--DAEKFKEDSLRVLRAMQFSARFG 192
Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
+ V A L + ++ + L A++ ++
Sbjct: 193 YRIEKRSCKVMQGIALDDLSHERIFWEFEKMFQAHFLHFGLYALITLH------------ 240
Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298
I + I + FE ++ + K L + + +
Sbjct: 241 --IDRKLFNVHISRMKFFEIALELMRNRASFQKHLYKFEFLYILAM----KLHKKATFFL 294
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
++ + +K Y + L + ++ I + W
Sbjct: 295 EILQTPKEYFKAFKKQKAIPRYRSDRFVVGLATNYPIKNWLGNYKQDVTIRA--KNFGVW 352
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397
++ P+ ++++ G G +G L + I F
Sbjct: 353 EEKFQPVHAKELMQEGFD-GPALGQELRKRTLQIIRQRF 390
>gi|325119871|emb|CBZ55424.1| hypothetical protein NCLIV_058470 [Neospora caninum Liverpool]
Length = 768
Score = 70.6 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 38/127 (29%), Gaps = 15/127 (11%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVM----RIFSKTRYKVIPTS--------- 74
GG VRD LM DIDIA
Sbjct: 43 LRAAGGWVRDKLMKRRSDDIDIAIDKCTGVEFATNLNSWLRAQGLPTHAIGVVASNPDQS 102
Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
T D LR++ R + V + D+ RRDFT+NAL+ +
Sbjct: 103 KHLETATCRLANHQVDFVHLRTETYSEHSRIPENVGFGTPEEDAQRRDFTLNALFYNLHT 162
Query: 134 KVIDYVG 140
K ++
Sbjct: 163 KKVENFT 169
>gi|56750755|ref|YP_171456.1| polyA polymerase [Synechococcus elongatus PCC 6301]
gi|56685714|dbj|BAD78936.1| polyA polymerase [Synechococcus elongatus PCC 6301]
Length = 364
Score = 70.6 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 54/378 (14%), Positives = 118/378 (31%), Gaps = 36/378 (9%)
Query: 53 TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD 112
+ + + + + +++ D
Sbjct: 4 NGAVETARSLARQHQAGFVLLDADRQIARVVFADMTVDFA--------------QQEGDR 49
Query: 113 WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
+ D RRDFTINA+ D Q + + G + + + + +++D LR+LR +R
Sbjct: 50 LEQDLRRRDFTINAIAYDWQRQTVIDPLGGQADLEQGLLRMVAPEN-LVDDPLRLLRAYR 108
Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
A +I+ + A + L ++ ERIW+E+ +LL P +V G+
Sbjct: 109 QAAQLSF-SIEPETAAAIAQLAPLLPQVAGERIWAELQRLLNVPPPHPVLVEAIASGLLA 167
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL--------------RFIVLISWQDKKSI 278
F + + L+ + Q + ++ + D+
Sbjct: 168 PWFPEATPECMSTLADHWQQLQAQAPEWPHWFTAIGPGGRLSHLAYAWLTRLLPSDRDRA 227
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
L R + L+ + +T L+ + + + + L
Sbjct: 228 LESLLALKSSRAEQRSLLQLQQHWQDCQTSKAATTAGQVALF--QTLGKLVPVLLVQLEA 285
Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSF 397
+ Q + + + ++G D+ GI G ++G +L + F
Sbjct: 286 SELRQ--TLLRRYQTPNDPIAHLQPLVSGTDLQVSLGIRGGPRLGQLLQDLRVAQAEQQF 343
Query: 398 QLSQEDLHHLLRKLIASS 415
S + + + S
Sbjct: 344 SDSAGAI-AFAARWLQES 360
>gi|320450024|ref|YP_004202120.1| tRNA nucleotidyl transferase [Thermus scotoductus SA-01]
gi|320150194|gb|ADW21572.1| tRNA nucleotidyl transferase [Thermus scotoductus SA-01]
Length = 431
Score = 70.6 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 63/395 (15%), Positives = 122/395 (30%), Gaps = 63/395 (15%)
Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91
VGGA+RD L+ QD+D S + P G +++ D
Sbjct: 21 VGGALRDLLLGRRPQDLDFVAEDPRKAAQDAQSHLGGTLFPLDEERGQYRLVTGGLVLDF 80
Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151
+ L + D L+RDF +NAL+ Q +++ G DL R +
Sbjct: 81 SPL---------------EGSLEEDLLKRDFRLNALFWRQN-RILGIRGADEDLNRRVLV 124
Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI----LSSERIWS 207
+ +A+ + ED+LR LR R A G S A+ + ER+
Sbjct: 125 PVREAN--LYEDHLRSLRAVRLAASLGLGLPGETRNALSHHARFLQAHLEALPARERVKE 182
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------QEISLDQLSQVIEAEQVFEWKID 261
E+++LL + + G+ ++ ++ + L V
Sbjct: 183 ELSRLLLSPRAAWGFHLLERTGLLDVYLPELRLLVGLKQGGVHHLDGWQHTLSVLFHLAW 242
Query: 262 SLL------RFIVLISWQDKKSILSM-----------------------AKKFSLPREIR 292
R L K + P+E
Sbjct: 243 LWPEAPLEARLAALYHDVGKPLTRRFDPEAGRFRFLGHAEVGAELTGASLEWLRFPKETV 302
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
+ + ++ +++ ++ ++ L +A + +
Sbjct: 303 ERAKALVGRHMDRPPEGKQALRRFYFR--RHHLLPALPYLMAADRLGTKGVEKEAWEVLE 360
Query: 353 SDIIHWKKP---LFPLTGDDVVKY-GIPPGKKVGN 383
+ +P L+G++V+ + PG +VG
Sbjct: 361 AYWETLSEPLPERPLLSGEEVMALLDLKPGPQVGR 395
>gi|115387873|ref|XP_001211442.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195526|gb|EAU37226.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 522
Score = 70.2 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 75/477 (15%), Positives = 138/477 (28%), Gaps = 91/477 (19%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT----------------------------ILPDRVM 60
GG VRD L+ + QDID+A +
Sbjct: 42 LRFTGGWVRDKLLGVDSQDIDVAINTMTGYQFGMRLKEYLDQPENLEKYRTNHANGEMRE 101
Query: 61 RIFSKTRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
I S + + P + T+ D+ LR + TD + + D++R
Sbjct: 102 AIVSLHKIEANPEKSKHLETVTTKIFGLDIDLVNLRKETYTDDSRNPQMEFGTAEEDAMR 161
Query: 120 RDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TINAL+ + ++ G D+R+R I+ + + +D LR+LR RF +
Sbjct: 162 RDATINALFYNLNESKVEDLTGRGFEDMRHRIIRTPLEPYQTFKDDPLRVLRLIRFASRL 221
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G + + +S ER+ +E+ K+L +P A+ + G++ IF
Sbjct: 222 GYRIDEETERAMQNSDISVALKLKISRERVGTELEKMLRGPDPRGALHFIDRLGLYPTIF 281
Query: 236 LDVQEISLDQLSQVIEAEQVFE-----------WKIDSLLRFIVLISWQDKKSILSMAKK 284
+ Q+ + A E L+R + L+
Sbjct: 282 TNYQDDVRCDTASWSLAYNAMERLLRDDAEATTLCRTQLIRDKSETYHAWIITALAPWSN 341
Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD--KVMIAKLKIFLALHYNNLTH 342
S+ K L D K + + +L +
Sbjct: 342 VPTRVMEGPKAKPLPPRAAEVARDSLRSDNKTVTLLADAAKSWEKIIDVKSSLLKGAMGG 401
Query: 343 QDTCFILQVLSDIIHWKK-------------------PLFPLTG----------DDV--- 370
Q+ + WKK + G +D+
Sbjct: 402 TAAEVRQQIGLYLRAWKKDWRLCMVLSALQEVMQGGEFSEVVDGYNKFLSYIVENDLQDV 461
Query: 371 --VK-----------YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+K G G + + + + ++ L ++
Sbjct: 462 CTMKPIVNGSEIMKGLGARNGPWMSKAMEEVIEWQLLHPDVTDKQKALDHLAQMKGE 518
>gi|124804037|ref|XP_001347883.1| tRNA nucleotidyltransferase, putative [Plasmodium falciparum 3D7]
gi|23496136|gb|AAN35796.1| tRNA nucleotidyltransferase, putative [Plasmodium falciparum 3D7]
Length = 791
Score = 70.2 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 22/191 (11%)
Query: 12 DSDLINILSLLNKGEDK------SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFS 64
+ N+ L ++ +VGG VRD +N++ DIDI +
Sbjct: 178 RKEEENLFEFLKSVNERYNLNCTLRVVGGWVRDKFLNINNDDIDITVDNMKGAEFCNYIK 237
Query: 65 KTRYKVIPTSISYGTIKIICR-------------KKYFDITTLRSDLITDGRYAKVVFTR 111
+ + + ++G IKI DI LR++ T+ +
Sbjct: 238 EYIKEKENKNFNFGIIKINSDQSKHLETSSFNLFNFQVDIVNLRNEKYTEESRIPEIVIG 297
Query: 112 DWKADSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILR 169
+ D+LRRDFT+N+L+ + + K ++ G+ L+N I + L+D LRI+R
Sbjct: 298 TPEEDALRRDFTVNSLFYNLKNKKVEDYTEKGIFHLKNHIISTPLEPLATFLDDPLRIVR 357
Query: 170 FFRFFAHYGEK 180
RF +
Sbjct: 358 CIRFCGFFNFF 368
>gi|68011085|ref|XP_670997.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56486772|emb|CAH99245.1| conserved hypothetical protein [Plasmodium berghei]
Length = 271
Score = 70.2 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 16/168 (9%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICR-- 85
+VGG VRD +N+S DIDI + + + ++G IKI C
Sbjct: 90 LRVVGGWVRDKFLNISNDDIDITVDNMKGSDFCNYIKEYIKDKENKNFNFGIIKINCDQS 149
Query: 86 -----------KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
DI LR++ T+ + + D+LRRDFTIN+L+ + + K
Sbjct: 150 KHLETSSFNLFNFQVDIVNLRNEKYTEESRIPEISIGTVEEDALRRDFTINSLFYNLKNK 209
Query: 135 VIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
++ G+ LRN+ I + L+D LRI+R R ++
Sbjct: 210 KVEDYTKNGIYHLRNKIISTPLNPLTTFLDDPLRIIRCIRVCGYFDFN 257
>gi|94266115|ref|ZP_01289830.1| Polynucleotide adenylyltransferase region:Metal-dependent
phosphohydrolase, HD subdomain [delta proteobacterium
MLMS-1]
gi|93453312|gb|EAT03752.1| Polynucleotide adenylyltransferase region:Metal-dependent
phosphohydrolase, HD subdomain [delta proteobacterium
MLMS-1]
Length = 509
Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/186 (23%), Positives = 66/186 (35%), Gaps = 26/186 (13%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGED--KSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58
M + +H H +L + I GGAVRD L +D+D
Sbjct: 1 MDATSRHPGLHSYPAELATALAGACGAQRELYIAGGAVRDWLRGCRSRDLDFTVPAGGIA 60
Query: 59 VMRIFSKT-RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
R + + ++ + +++ R D + LR D
Sbjct: 61 FARRLAAQLQASLVILDPEHDLARVVWRDLDLDCSGLREKAT------------GMAEDL 108
Query: 118 LRRDFTINALY---------ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168
RRDFTINA+ QQ ++D GG DL I+ + D LR+L
Sbjct: 109 RRRDFTINAMAVALEVRDKRCRQQPGLLDPTGGRQDLAAGIIRAVHPGA--FAADPLRLL 166
Query: 169 RFFRFF 174
R +RF+
Sbjct: 167 RAYRFW 172
Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 12/130 (9%)
Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV---MIAKLKIFLALHYNNLTHQDTCFI 348
+ N ++ ++ +L GD + + + LA +
Sbjct: 377 HHMWPFHLNNAQRRQGITPRACLRLVRKLGDDLPGLFLLAMADSLAGRGAGKPPAMEKEL 436
Query: 349 LQVLSDIIHWKKPLF--------PLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQL 399
+V ++++ + L G D+ + + PG IL +Q +
Sbjct: 437 AEVYTEVMRVSRQQLEPVLSQPPLLNGHDLQRLCNLTPGPHFKKILDGLQQAQVAGEIHD 496
Query: 400 SQEDLHHLLR 409
E L + R
Sbjct: 497 RHEALAWVKR 506
>gi|303314721|ref|XP_003067369.1| tRNA nucleotidyltransferase, mitochondrial precursor, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240107037|gb|EER25224.1| tRNA nucleotidyltransferase, mitochondrial precursor, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 625
Score = 69.9 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 63/507 (12%), Positives = 139/507 (27%), Gaps = 113/507 (22%)
Query: 15 LINILSLLNKGEDK-----------SCIVGGAVRDSLMNLSVQDIDIATTI-----LPDR 58
L++++ + + K GG VRD L+ + DID+ +
Sbjct: 107 LLDVVEYIKQKGAKNGDKSIPQDVVLRFTGGWVRDKLLGVDSNDIDVGISTMTGYKFGVE 166
Query: 59 VMRIFSK-----------------------TRYKVIPTSISY-GTIKIICRKKYFDITTL 94
+ + + P + T+ D+ L
Sbjct: 167 LKEYLDNPEHLEKYKSFHSDDALKSVIGGLHKIEANPEKSKHLETVATKIFGLEVDLVNL 226
Query: 95 RSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKF 152
R + +D + + D+LRRD T+NAL+ + ++ G+ DLR I+
Sbjct: 227 RKETYSDHSRHPEMEFGTAEEDALRRDATVNALFYNLHTSSVEDFTGRGIADLRAHLIRT 286
Query: 153 IGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW-----S 207
+ + +D LR+LR RF + G K + K L +
Sbjct: 287 PLEPYQTFKDDPLRVLRLIRFSSRLGYKIDPNTEESMQHDDIKDALKLKISQERIGAEVE 346
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLD-----------------------VQEISLD 244
++ K + L+ I + D E+++
Sbjct: 347 KMLKGPDPLMALHIIERLGLYDTIFANHQDDVVVDVSSWSRAYESLMAILDDNYNEVTIS 406
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
Q S+ + + D+ +++ +++ + +E+ +
Sbjct: 407 QESRATLRSILIRHREDT--YHSWMLAALSPWAVVPQKEPPPNKKELPPRPSMVARDSLR 464
Query: 305 QKTLSIPEIKKLFYLYG----------------------------------DKVMIAKLK 330
++ +K YG + +
Sbjct: 465 ADNKTVDILKSGAKYYGMVSDLKSAFLNRELGKTLPDIRWRIGRSIRIMGAEWRLCFIQA 524
Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWK-----KPLFPLTGDDVV-KYGIPPGKKVGNI 384
+ L + + ++ L I G + G PG +
Sbjct: 525 VLLEIMQGEEAGKVFSEYVEFLLYIKEQNMLDVDALRPLANGHQLASALGAMPGPWMSKA 584
Query: 385 LVHCKQEWINSSFQLS-QEDLHHLLRK 410
L + + + + + + R+
Sbjct: 585 LEMVIEWQLRNPERDDGDGAIAEVKRR 611
>gi|167749765|ref|ZP_02421892.1| hypothetical protein EUBSIR_00732 [Eubacterium siraeum DSM 15702]
gi|167657248|gb|EDS01378.1| hypothetical protein EUBSIR_00732 [Eubacterium siraeum DSM 15702]
Length = 465
Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 44/343 (12%), Positives = 109/343 (31%), Gaps = 18/343 (5%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ +L +L + +K+ VG V + L S D DI TT ++ +F +++
Sbjct: 12 EQALQVLKMLERAGNKAYFVGQCVAELLRGGSPMDYDIITTADFGEMLYVFRD--MRIVS 69
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ ++ + +++ ++ K V+T ++ D + RDF+ A+ +
Sbjct: 70 QNEDMSSVMVSSLGLVIQVSSYCGEIKD----GKAVYTDNYIFDLVHRDFSAFAIAYHPR 125
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
D G+ +++ I + + + + ++ + +
Sbjct: 126 KGFRDPFDGMPCIKDGVITLKAIGEY-----PVVMWHENDLDENELTLKLEPKSSLVTNP 180
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ-----LS 247
+ + + A + E+ I L + ++
Sbjct: 181 FNMLTALELLGA--ENYEIDSVTADAIKADAPLLREADKHELSRRFTRILLTRNISGVMA 238
Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307
+ E E ++ R+ +S + +F+ P+ + + F N
Sbjct: 239 RFPEVFSAIEPELLKAQRYKERYYDSTLWEHISKSVEFAPPQADIRYAMLFHNVGIPDCR 298
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
FY +G+ I F DT +++
Sbjct: 299 CRDSHGNTFFYGHGEYGRITAANFFEKYRAELKLRSDTDMLIE 341
>gi|283852882|ref|ZP_06370143.1| metal dependent phosphohydrolase [Desulfovibrio sp. FW1012B]
gi|283571711|gb|EFC19710.1| metal dependent phosphohydrolase [Desulfovibrio sp. FW1012B]
Length = 440
Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 50/429 (11%), Positives = 124/429 (28%), Gaps = 45/429 (10%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
+ + D + + + + ++ A+++ ++ + ++D+AT + ++F
Sbjct: 1 MAQPF---KDATALCKTIMRNGYDAYVISAALQEKALDAAAPELDLATDAPLAELQKLFP 57
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ + ++ F I + + T A R
Sbjct: 58 --GTEALSEGGAF--ALARHGDTLFYIHPADTADASHPEETVARLTSRLVARLEARGILP 113
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
D G DL ++ +G I ++YLR +R RF A+Y +
Sbjct: 114 PHQACPYLPHQQDAHDGFADLAGGEVRLVGIPDECIRQNYLRAVRALRFSANYNIPVEAN 173
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ +++ L +S + I E K+ + +Y+ I +V ++
Sbjct: 174 TFMAILRASRRVLDYVSVKDIMDEWRKVEAENMAT-FVELLYDTMILHWFLPEVATLARI 232
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK-------------------- 284
+ E + +++R D L+
Sbjct: 233 KQKSEEGVEYTLFEQTLAVMRHYPEELPYDWYGTLACLFHDVGKLHTAEYAGGELHFFQH 292
Query: 285 --------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330
P + + + + + + F D+
Sbjct: 293 HQVGAKVARKILSRLGFPPDETDLVCNLVRGHMRFHFMLTDRGIRRFKAL-DQYPRLIEM 351
Query: 331 IFLALHYNNLTHQDTCFILQVLSDII-HWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHC 388
+ + T+++ +++L + L G +++ + PG VG I
Sbjct: 352 ARADIKAVSGTYKEFNHNMKMLERTETPEEMLEPLLNGARIMQLLDLKPGPAVGLIRDAL 411
Query: 389 KQEWINSSF 397
+ I
Sbjct: 412 LKGQIAGDV 420
>gi|147827432|emb|CAN68616.1| hypothetical protein VITISV_023390 [Vitis vinifera]
Length = 346
Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 57/272 (20%), Positives = 100/272 (36%), Gaps = 35/272 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFS---------KTRYKVI------ 71
+ + GG VRD L+ DIDIA +L + K R +
Sbjct: 39 QLRVAGGWVRDKLLGKECYDIDIALDDMLGREFCEKINDYLSCYRGGKARNRCYSMIILA 98
Query: 72 ------------PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
S T ++ ++ D LRS+ ++ + K D+ R
Sbjct: 99 DYAIDSQFFSNPDQSKHLETARMRLFDEWIDFVNLRSEDYSENSRIPTMRFGTAKEDAYR 158
Query: 120 RDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TIN+L+ + ++ G+ DL++ I L+D LR+LR RF A +
Sbjct: 159 RDLTINSLFYNINTSSVEDFTGRGIEDLKSGKIVTPLPPKDTFLDDPLRVLRAIRFGARF 218
Query: 178 GEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNA---IVHMYNGGIFK 232
G + L A + +S ERI EI+ ++ P+ A I + +
Sbjct: 219 GFILDEELKLAAGCDDVRAAIADKISRERIGHEIDLMISGNEPVKAMTYICDLLLFSVVF 278
Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264
+ V+ ++ ++ W + L+
Sbjct: 279 SLPPIVKPAISEECDRLCIGYIDAGWNLIQLI 310
>gi|58699324|ref|ZP_00374104.1| poly A polymerase family protein [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58534160|gb|EAL58379.1| poly A polymerase family protein [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 148
Score = 69.5 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361
N + LS E KK L+G ++ +KI N+ + +S + P
Sbjct: 46 NDIKTELSEKEQKKYISLFGRELYCDLVKICGVESGENVD--------EYISFANTFNIP 97
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
FPL+GDD++ G PGK +G L KQ W +SS+ L++E+L + L
Sbjct: 98 KFPLSGDDLISIGHQPGKSLGRNLELLKQHWEDSSYTLTKEELVLYAKSL 147
>gi|330812875|ref|XP_003291342.1| hypothetical protein DICPUDRAFT_38806 [Dictyostelium purpureum]
gi|325078484|gb|EGC32133.1| hypothetical protein DICPUDRAFT_38806 [Dictyostelium purpureum]
Length = 556
Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 69/339 (20%), Positives = 116/339 (34%), Gaps = 23/339 (6%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTR-YKVIPTSI----- 75
+ + GG VRD L DIDI ++ + + +K K T
Sbjct: 88 SNCGTTLRVAGGWVRDKLRGDDSNDIDITLDNMMGESFAELVNKHLSGKQHQTHRIGVIQ 147
Query: 76 ------SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ T + + D LRS+ TD + DSLRRD TIN+L+
Sbjct: 148 SNPEQSKHLETATVKIFDLWIDFVNLRSETYTDNSRIPEIKIGTPLEDSLRRDLTINSLF 207
Query: 129 ADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS-- 184
+ I+ G DL I+ L+D LR+ R RF + K
Sbjct: 208 YNINENKIEDFTGKAITDLNLGIIRTPLPPLTTFLDDPLRVFRSIRFASRLYFKIDQELV 267
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF-KEIFLDVQEISL 243
+ ++ + +S ERI E + +L K P AI +Y GI+ L +
Sbjct: 268 EAASNAVVKEAIKSKISHERIAKEFDGMLGGKRPDLAISLIYRFGIYDCLFSLPTSGLDH 327
Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303
++ + ++ L + + +P ++ I++ N N
Sbjct: 328 TKVHTEYREQSIYYCSQAMRLIEWGSQDEELSTKRQRLLSALCIP----FYGITYLNANK 383
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
K S+ + YL ++ + L Y H
Sbjct: 384 KNKETSVIHYMIIEYLKLSNKDNDEISLVLDTAYQIRPH 422
>gi|71019801|ref|XP_760131.1| hypothetical protein UM03984.1 [Ustilago maydis 521]
gi|46099761|gb|EAK84994.1| hypothetical protein UM03984.1 [Ustilago maydis 521]
Length = 763
Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 67/193 (34%), Gaps = 32/193 (16%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVM---------RIFSKTRYKVIPTSISY 77
++ I GG VRD L+ D+DI+ +T+ + F+ + P
Sbjct: 101 EARIAGGWVRDKLLARDSDDLDISLSTLTGNAFALYLKHYLSSSAFASSPLSRSPFFSEE 160
Query: 78 G--------------------TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
G T D LR + G + K D+
Sbjct: 161 GSEMGRIGKIAANPEQSKNLETATARVLGLSLDFVNLRKETYDPGSRIPTMTFGTPKEDA 220
Query: 118 LRRDFTINALYADQQGKVIDYVG--GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
RRD TIN+L + + ++ GL DL + I+ L+D LR+LR RF +
Sbjct: 221 ERRDITINSLLYNVHTRQVEDHTGLGLQDLASGLIRTPLPPLTTFLDDPLRVLRCVRFAS 280
Query: 176 HYGEKNIDSDGLV 188
+ + +
Sbjct: 281 RFTYELHPTIIRC 293
>gi|323301098|gb|ADX35891.1| MIP28916p [Drosophila melanogaster]
Length = 230
Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 16/233 (6%)
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
N D L A + KGL +S ERIWSE+ K++ + M+ +F+ I L +E
Sbjct: 1 NHDKATLAAIKENAKGLARISGERIWSELQKIVPGNFGAALFLEMHRCNLFEYIGLP-KE 59
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
LD+ ++ +A FE +L ++ + + K S ++ F
Sbjct: 60 PYLDEFDRLCKALDQFEKPHQPILYLAGMLHSVEDAMEMHKRLKLSA------RDLARFI 113
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
+K S + + + I + + L Y+ L++ + + W K
Sbjct: 114 TQEREKVGSQYTTLRDYQKLCLQKYIQRDFVEQLLKYSGK--------LELYNQLKSWVK 165
Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
P FP+ G+ + + G+ G ++G ++ K W +S FQL+ +DL + ++
Sbjct: 166 PDFPIRGNALAQRGL-NGMRLGLVMDELKLLWADSDFQLTHDDLLKWIPNVLK 217
>gi|46581307|ref|YP_012115.1| HD domain-containing protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601512|ref|YP_965912.1| metal dependent phosphohydrolase [Desulfovibrio vulgaris DP4]
gi|46450728|gb|AAS97375.1| HD domain protein [Desulfovibrio vulgaris str. Hildenborough]
gi|120561741|gb|ABM27485.1| metal dependent phosphohydrolase [Desulfovibrio vulgaris DP4]
gi|311234970|gb|ADP87824.1| metal dependent phosphohydrolase [Desulfovibrio vulgaris RCH1]
Length = 442
Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/446 (10%), Positives = 123/446 (27%), Gaps = 56/446 (12%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQD----IDIATTILPDRVMRIFSKT 66
D I+I + + + +V + + +D ID+A D + R+F
Sbjct: 6 KDAISICKTILRNGYDAYVV-----NMRLQSELMAEDKRMEIDLACECDFDEIARLFPNA 60
Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ + + ++ + + T A ++
Sbjct: 61 T-RSDEEGV---LAMLEEGGVAHRFYLTDTEESSYPDRTLMRITPHMVARLQALGKAHSS 116
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
L I+ G + +YL +R R+ A+ +
Sbjct: 117 LTLPYGAAAPHDSDDFESFDKGIIRLRGLPDETLRRNYLLAVRAIRYAANLDMEIDPVTW 176
Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ A + L + I +E + + +++ + + +V ++ +
Sbjct: 177 IAIVRSAGRVLDYVPVSDIVAEWQMVEAETMW-KFVRLLFDAQLLHGLLPEVAALARVRQ 235
Query: 247 SQVI--EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK-------------------- 284
S+ + E V + I+ + + D L+M
Sbjct: 236 SRNDSGDTETVLDHTIECMRHYPEEGFHHDWYGTLAMLFHDVGKLFTADFHDGQWTFYQH 295
Query: 285 --------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330
LP + + + + + + F D+
Sbjct: 296 HRVGAKVTRRLLHRLHLPAQEVDLICHLVRHHMRFHFMLTDKGIRRFAAL-DEYPRLMEM 354
Query: 331 IFLALHYNNLTHQDTCFILQVLSDII-HWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHC 388
+ + ++ + L + L G++++++ G+ PG +VG I
Sbjct: 355 ARADIKARDGSYTYFNHNQKYLERAATPEQMLEPLLNGNEIMQHTGLHPGPQVGLIRDAL 414
Query: 389 KQEWINSSFQLSQEDLHHLLRKLIAS 414
+ + + + +++
Sbjct: 415 LNAQVTGAVADVNDAV-AFIKEYKRQ 439
>gi|195941159|ref|ZP_03086541.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Escherichia coli O157:H7 str. EC4024]
Length = 48
Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPT 73
KS +VGGAVRD+L+ L V+D D P+ ++ + + P
Sbjct: 2 KSYLVGGAVRDALLGLPVKDKDWVVVGATPEAMIDAGYQQVGRDFPV 48
>gi|260893163|ref|YP_003239260.1| CBS domain containing protein [Ammonifex degensii KC4]
gi|260865304|gb|ACX52410.1| CBS domain containing protein [Ammonifex degensii KC4]
Length = 769
Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 49/259 (18%), Positives = 94/259 (36%), Gaps = 14/259 (5%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79
L K + +VG +VRD L+ +A +++ K+ +
Sbjct: 470 RLAEKAGMEIYLVGESVRDLLLGRERLVYHLAADGEVEKLYEELGKS--AQVEDGR---- 523
Query: 80 IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV---- 135
+ + F + L+ + + + + ++DFTI+AL
Sbjct: 524 -LCLEERFCFYLRQLKPSFLEYDATGNPLPNSLLRQELYQQDFTIDALAIALTPHRFGVL 582
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
ID+ GG NDL+N ++ + + E+ LRILR R A ++
Sbjct: 583 IDFFGGQNDLKNGLLRVLH--SYSFRENPLRILRILRLAAELNFLIERETARFLREALRE 640
Query: 196 GL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
G + + E++W EI LE N + + G++ +F + L+ +E E
Sbjct: 641 GKLEQVPGEKLWEEIKLGLEGPNVPLFLSRLAEMGVWPRLFPGLDYGRASSLAVALEREL 700
Query: 255 VFEWKIDSLLRFIVLISWQ 273
L F++ +
Sbjct: 701 AESGSKKKWLCFLLAFCYL 719
>gi|302342109|ref|YP_003806638.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfarculus baarsii DSM 2075]
gi|301638722|gb|ADK84044.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfarculus baarsii DSM 2075]
Length = 478
Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 66/470 (14%), Positives = 129/470 (27%), Gaps = 112/470 (23%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-------KTRYKVIPTSISYGTIK 81
+ GGA+RD+L++ + + + + I + + +
Sbjct: 28 LWLCGGAIRDALLDRRPA------DLDLAADGDAAALAQDLAHELNGRYILLDPDHQSCR 81
Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ------GKV 135
++ + D+T LR+ + D + RDFTINA+ A +
Sbjct: 82 VVADGQAIDLTGLRAP--------------TIEQDLVARDFTINAMAAPLDALLAGRPVL 127
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195
+D GG DLR ++ G R D LR+LR R A G A
Sbjct: 128 LDPTGGQADLRAGLLRPAGSGVLR--ADPLRVLRAGRLAAELGLSPAPGLPERLGRAASG 185
Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG----------------IFKEIFLDVQ 239
+ +LEA +P + + G LDV
Sbjct: 186 LAQTPKERLAHE-WLAMLEAADPNRGVNLLEQCGALGLLLPALEAGRGLGQNPFHHLDVF 244
Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP----------- 288
+ +L L+ + + ++ ++ L
Sbjct: 245 DHNLACLAAAQDIWRDPSPLFGAMAAETADYLTPPRRRALLFCAALLHDVGKSATRLETG 304
Query: 289 ----------------REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV-------- 324
+ + + F+L G +
Sbjct: 305 PGWATFYRHDSVGAELAHAACQRLGLAKADSRFVARMTAMHMRPFHLLGAQNRGQLTARG 364
Query: 325 ---------------MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK--------KP 361
I + +A + ++ + H +
Sbjct: 365 ARRLIQAVGDDLPGLFILAMADTVAGRGAQRPPDAEKRLTRLYGRVAHLRDSQLKAALAA 424
Query: 362 LFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
L G ++ G+ PG +VG +L ++ ++ + E L +L R+
Sbjct: 425 PPLLDGRQLMAALGVGPGPEVGRLLALLREAQLDGAITNPYEAL-NLARR 473
>gi|94264352|ref|ZP_01288144.1| Polynucleotide adenylyltransferase region:Metal-dependent
phosphohydrolase, HD subdomain [delta proteobacterium
MLMS-1]
gi|93455246|gb|EAT05459.1| Polynucleotide adenylyltransferase region:Metal-dependent
phosphohydrolase, HD subdomain [delta proteobacterium
MLMS-1]
Length = 509
Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/185 (23%), Positives = 65/185 (35%), Gaps = 26/185 (14%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGED--KSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58
M + +H H +L + I GGAVRD L +D+D
Sbjct: 1 MDATSRHPGLHSYPAELATALAGACGAQRELYIAGGAVRDWLRGCRSRDLDFTVPAGGIA 60
Query: 59 VMRIFSKT-RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117
R + + ++ + +++ R D + LR D
Sbjct: 61 FARRLAAQLQASLVILDPEHDLARVVWRDLDLDCSGLREKAT------------GMAEDL 108
Query: 118 LRRDFTINALY---------ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168
RRDFTINA+ QQ ++D GG DL I+ + D LR+L
Sbjct: 109 RRRDFTINAMAVALEVRDKRCRQQPGLLDPTGGQQDLAAGIIRAVHPGA--FAADPLRLL 166
Query: 169 RFFRF 173
R +RF
Sbjct: 167 RAYRF 171
Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 12/130 (9%)
Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV---MIAKLKIFLALHYNNLTHQDTCFI 348
+ N ++ ++ +L GD + + + LA +
Sbjct: 377 HHMWPFHLNNAQRRQGITPRACLRLVRKLGDDLPGLFLLAMADSLAGRGAGKPPAMEKEL 436
Query: 349 LQVLSDIIHWKKPLF--------PLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQL 399
+V ++++ + L G D+ + + PG IL +Q +
Sbjct: 437 AEVYTEVMRVSRQQLEPVLSQPPLLNGHDLQRLCNLTPGPHFKKILDGLQQAQVAGEIHD 496
Query: 400 SQEDLHHLLR 409
E L + R
Sbjct: 497 RHEALAWVKR 506
>gi|332765305|gb|EGJ95529.1| tRNA nucleotidyltransferase [Shigella flexneri 2930-71]
Length = 388
Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 55/322 (17%), Positives = 108/322 (33%), Gaps = 22/322 (6%)
Query: 50 IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV- 108
+ P ++ + + P + + + + R++ + Y
Sbjct: 1 MVVGSTPQEMLDAGYQQVGRDFPVF--------LHPQTHEEYALARTERKSGSGYTGFTC 52
Query: 109 ---FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165
+ D RRD TINAL D G++ID GL DL+NR ++ + ED L
Sbjct: 53 YTAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRLLRHV---SPAFGEDPL 109
Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK----ILSSERIWSEINKLLEAKNPLNA 221
R+LR RF A Y ++ + L+ ER+W E L +NP
Sbjct: 110 RVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEHLTPERVWKETESALTTRNPQVF 169
Query: 222 IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281
+ + G + +F ++ + E L ++S Q ++
Sbjct: 170 FQVLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGIHTLMTLSMAAMLSPQVDVRFATL 229
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLFYLYGDKVMIAKLKIFLALHYNNL 340
+ + + + + + E + + + +A+L
Sbjct: 230 CHDL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIRTF 287
Query: 341 THQDTCFILQVLSDIIHWKKPL 362
+ I+++ I W+KP
Sbjct: 288 PMLNPKTIVKLFDSIDAWRKPQ 309
>gi|315635816|ref|ZP_07891078.1| tRNA nucleotidyltransferase/poly(A) polymerase [Arcobacter butzleri
JV22]
gi|315479795|gb|EFU70466.1| tRNA nucleotidyltransferase/poly(A) polymerase [Arcobacter butzleri
JV22]
Length = 324
Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/338 (14%), Positives = 109/338 (32%), Gaps = 28/338 (8%)
Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVI 136
+ + FD + R + + + + +K ++RRDFTINA+ + I
Sbjct: 2 TLKIDEYDFDFSLPRIEKKVGNSHTDFEVSTNANLSFKEAAIRRDFTINAIGYEYFKNEI 61
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
G + I +ED LR+ R +F + + K ++ ++ G
Sbjct: 62 LDPFGGMNDLKNKIIK-HIDDKTFVEDSLRVYRSVQFASRFEFKIDENTKILCKKIVSSG 120
Query: 197 LKI--LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
L++K P + + I + +L + + ++
Sbjct: 121 ELKFLPKERVFEELKKLFLKSKKPSLGLNLLKEFNIMNIEQNLEEIDNLAFILK----DK 176
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
++ L + L ++ S K + ++ ++ N + +
Sbjct: 177 NYDDFRKLYLFYSCLCKGMNEDETFSFIKNLTDDKKFIKNILILNETNLTNDIKILKRLS 236
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-LFPLTGDDVVKY 373
L L + +Q + + ++L ++ P + G D++K
Sbjct: 237 LKLKLED-----------LIVLNQAFKNQISLEVFEILKNLDILNSPIKPLVLGKDLIKL 285
Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
G P KK IL I S +++ K+
Sbjct: 286 GFAPSKKFKEILDFAFDLQIEDDLSKS-----NIIEKI 318
>gi|262199673|ref|YP_003270882.1| polynucleotide adenylyltransferase region [Haliangium ochraceum DSM
14365]
gi|262083020|gb|ACY18989.1| Polynucleotide adenylyltransferase region [Haliangium ochraceum DSM
14365]
Length = 287
Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 71/233 (30%), Gaps = 7/233 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR---YKVI 71
+L L+ +VGGA RD L + +D D+A +RV + V+
Sbjct: 43 AREVLDALSAAGMAVFVVGGAPRDWLCGETARDFDVAVNQPIERVQAALRERFPDIEGVL 102
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG---RYAKVVFTRDWKADSLRRDFTINALY 128
+G ++ DI LR+ ++ D AD+ RDF+INA Y
Sbjct: 103 FEYPHFGMMRWGTTGSGIDINILRTAADLHPEGVASSQFSPGSDLAADARMRDFSINAFY 162
Query: 129 ADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ V D +G D + + + R +F D
Sbjct: 163 YPCRGPVVFDPLGCGLDELRSRTLRMVTEPALLACEPRTTPRIVQFVCRGYAPARDVLDY 222
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+ + L + W + + L + ++
Sbjct: 223 LDEYAERDVLAMGERLARWMLHHLDDAREARLRFRAQLACWLRNPVARACLER 275
>gi|327198468|ref|YP_004327056.1| putative tRNA nucleotidyltransferase/poly(A) polymerase [Erwinia
phage phiEa104]
gi|311875164|emb|CBX44424.1| putative tRNA nucleotidyltransferase/poly(A) polymerase [Erwinia
phage phiEa104]
Length = 422
Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 59/350 (16%), Positives = 102/350 (29%), Gaps = 36/350 (10%)
Query: 30 CIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGG++RD++ + D D ++++ + K K P I+
Sbjct: 4 FLVGGSIRDAVFGKASSDHDFVVVNATEEQLLDLGLKKVGKAFPVFIT---------DDG 54
Query: 89 FDITTLRSDLITDGRYAKV---VFTRDWKADSLRRDFTINALYADQ-----QGKVIDYVG 140
+I R + T Y D LRRDFTINA + +
Sbjct: 55 TEIAMARRENSTGEGYNDFEVETDGVTLDEDLLRRDFTINACASAVVNGGANTDELICAH 114
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------------EKNIDSDGL 187
++ R ED LRILR RF A + +
Sbjct: 115 PMSRYDLAHRILRVVDADRFKEDPLRILRGLRFAARHNLFIEPETKALFRQMIEANCLAH 174
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ + K ++ +S + + L N I M K+ + ++ L+
Sbjct: 175 LPKERIWKEIEKAASAENFWKFVSLCGKFNLFPEISGMKGVRQPKKYHPEGDVLNHTVLA 234
Query: 248 QVIEAE-----QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
E + +L K+ LS L+SF
Sbjct: 235 LKHYEEVELPQYGWNSSDRVTQSLCILCHDMGKRLTLSERGNLHGHESDVRDLLSFIERI 294
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
K++ + + M + LAL + I+ L
Sbjct: 295 GAPKSVRVATQFCAEQHHRVHGMFVRRANRLALWLEEHNQFNNQAIVNAL 344
>gi|303290648|ref|XP_003064611.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454209|gb|EEH51516.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 787
Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 13 SDLINILSLLNK--GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62
+ I L+K ++ +VGGAVRD L+ + +D D+ T + ++
Sbjct: 318 KSVRKIAERLSKRADGARTFVVGGAVRDLLLGKTPRDYDLVTNATWRSIKKV 369
>gi|219681338|ref|YP_002456102.1| tRNA nucleotidyltransferase/poly(A) polymerase [Erwinia phage
phiEa21-4]
gi|199580605|gb|ACH88992.1| tRNA nucleotidyltransferase/poly(A) polymerase [Erwinia phage
phiEa21-4]
Length = 422
Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 60/351 (17%), Positives = 105/351 (29%), Gaps = 38/351 (10%)
Query: 30 CIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGG++RD++ + D D ++++ + K K P I+
Sbjct: 4 FLVGGSIRDAVFGKASSDHDFVVVNATEEQLLDLGLKKVGKAFPVFIT---------DDG 54
Query: 89 FDITTLRSDLITDGRYAKV---VFTRDWKADSLRRDFTINALYADQ-----QGKVIDYVG 140
+I R + T Y D LRRDFTINA + +
Sbjct: 55 TEIAMARRENSTGEGYNDFEVETDGVTLDEDLLRRDFTINACASAVVNGGANTDELICAH 114
Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------------EKNIDSDGL 187
++ R ED LRILR RF A + +
Sbjct: 115 PMSRYDLAHRILRVVDADRFKEDPLRILRGLRFAARHNLFIEPETKALFRQMIEANCLAH 174
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
+ + K ++ +S + + L N I M K+ + ++ L+
Sbjct: 175 LPKERIWKEIEKAASAENFWKFVSLCGKFNLFPEISGMKGVRQPKKYHPEGDVLNHTVLA 234
Query: 248 QVIEAEQVFEWKIDS------LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
+ E+V + +L K+ LS L+SF
Sbjct: 235 -LKHYEEVELPQYGWNSGDRVTQSLCILCHDMGKRLTLSERGNLHGHESDVRDLLSFVER 293
Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352
K++ + + M + LAL + I+ L
Sbjct: 294 IGAPKSVRVATQFCAEQHHRVHGMFVRRANRLALWLEEHNQFNNQAIVNAL 344
>gi|237735251|ref|ZP_04565732.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229380996|gb|EEO31087.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 417
Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 68/414 (16%), Positives = 140/414 (33%), Gaps = 58/414 (14%)
Query: 46 QDIDIATTILP-DRVMRIFSKTRYKVIPTSISYGTIKI-ICRKKYFDITTLRSDLITDGR 103
D+D+ L D + + + V S+G +K+ + D R+++ T
Sbjct: 10 HDVDVEVYGLSVDELEELLANYG-NVNSIGKSFGILKLDVLPNF--DFALPRTEIKTGES 66
Query: 104 YAKVVFTRDW----KADSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHH 158
+ T + K + RRD TINAL + + K+ D+ G D+ RT++ +
Sbjct: 67 HQDFDVTVNQNLDLKVAASRRDLTINALMYEIKTGKIYDFFHGQEDIEKRTLRMVS--ET 124
Query: 159 RILEDYLRILRFFRFFAH-YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKN 217
+ED LR+LR +F + + + + K L LS ER++ E +KLL ++
Sbjct: 125 TFIEDPLRVLRTAQFASRLDFCIETATKLMCKKMVQNKSLDKLSKERVFQEYSKLLLSQQ 184
Query: 218 PLNAIVHMYNGGIFKEI-------------FLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264
P + + + L + A +
Sbjct: 185 PSIGLTFLKEIKALWPCLDVLSKTMQRLDYHPEGDVWRHTLLVTDLAALCCHKTSNPLGF 244
Query: 265 RFIVLISWQDKKSILSMAKK------------------FSLPREIRYFLISFFNCNFNQK 306
+ L+ K ++ + F ++++ ++ + + +
Sbjct: 245 MWSALLHDIGKATVTTKDGHAPGHNEAGVKIFNQEVKAFIPDKQLQKYIKTMIFYHMHLM 304
Query: 307 TLSIPEIKKLFYLY---GDKVMIAKLKIFLALHYNNL-THQDTCFILQVLSDIIHWK--- 359
+ E K Y G ++ + L + L ++D + ++ K
Sbjct: 305 NMVRNEAKDYSYFKILKGIDGIVTIEDLILITKCDKLGRYKDEHENINRFDYVMKEKMAR 364
Query: 360 ---KPLFP-LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
K P + G D+ GI P K +L + S+ + ++
Sbjct: 365 LSTKAQLPLVDGYDLKALGIEPSSKYSELLDWAYDLQLRGH---SKAAILKMVE 415
>gi|168187422|ref|ZP_02622057.1| polyA polymerase family protein [Clostridium botulinum C str.
Eklund]
gi|169294619|gb|EDS76752.1| polyA polymerase family protein [Clostridium botulinum C str.
Eklund]
Length = 457
Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 69/471 (14%), Positives = 142/471 (30%), Gaps = 91/471 (19%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKV 70
++ ++ + IVGG +RD L+N +D+D+ + + +
Sbjct: 6 ENIKKVVKEI---GGDVYIVGGYIRDRLLNNKEISKDLDLIYDGDIKLLKDKLILDGFHI 62
Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
I + + DI + + + D RDFTIN++
Sbjct: 63 ITLKDEKQIYRAMLNDNTVDIALINGN--------------SIEEDLGERDFTINSIALK 108
Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190
I N + + + I +D +RILR +RF YG +
Sbjct: 109 LIDNKIIDPFNGRKHLNSKLIHP-VSENSIRDDNVRILRAYRFAIKYGMH-FSKECEKQI 166
Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ----------- 239
I K+ + ERI++E+ +++ A + G+ K + +
Sbjct: 167 IDNKESIMRFPKERIFNELMGIIKCDKFGRAFEELDTLGVLKNLLPYIDELKTVGKCKYH 226
Query: 240 ---------------------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI 278
E+S++ L I + V + + F V K
Sbjct: 227 IEDAFTHMNLAYKNSKAVLNGELSIEGLDLNIFDKDVAGFLMKEYFSFAVFCHDIGKFVC 286
Query: 279 ---------------------LSMAKKFSLPREIRYFLISFFNCNF-------NQKTLSI 310
+ K P+E + F+ + + N
Sbjct: 287 YKNKDGRVSFIGHDKEGAKIIFDVCNKLGFPKEAKKFIYNLTEAHMYPLGLCKNNVKNYK 346
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHY-------NNLTHQDTCFILQVLSDIIHWKKPLF 363
K F Y + F +H N+ F+ ++ + ++ +
Sbjct: 347 KSFYKFFLRYNKYIQFILALSFCDMHATKMLYDPNDEEKTFKSFLEKLYEEYKEFQNSIN 406
Query: 364 P--LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
+ G V++ G+ + +L ++ + +ED+ L K+
Sbjct: 407 SNWVDGKLVIEITGAEGEDIKKVLNDVYKK-LYYKELNDKEDVLKYLNKIK 456
>gi|296816052|ref|XP_002848363.1| tRNA nucleotidyltransferase [Arthroderma otae CBS 113480]
gi|238841388|gb|EEQ31050.1| tRNA nucleotidyltransferase [Arthroderma otae CBS 113480]
Length = 603
Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 73/481 (15%), Positives = 143/481 (29%), Gaps = 99/481 (20%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK---------------------- 65
GG VRD L+ + QDID+ + + +
Sbjct: 117 LRFTGGWVRDKLLGVDSQDIDVGISTMTGYDFGLALKEYLDIPEKLEKYKAHYPVHALKG 176
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ P + T I D+ LR + TD V + D+LR
Sbjct: 177 IIGGLHKIAANPKKSKHLETTTIRVFGFDVDLVNLRKETYTDDSRNPQVEFGTAEEDALR 236
Query: 120 RDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD T+NAL+ + ++ G +D+ ++ I+ + +D LR+LR RF +
Sbjct: 237 RDATVNALFYNLHTDEVEDFTGRGLSDMESKLIRTPLAPYQTFKDDPLRVLRLIRFASRL 296
Query: 178 GEKNIDSDGLVASIKA--KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI----- 230
G +S ERI EI K+L +PL ++ + G+
Sbjct: 297 GYTIDPDTETSMYNDDIKHSLKLKISQERIGIEIEKMLRGPDPLGSLEIINRLGLYDTIF 356
Query: 231 -------------FKEIFLDVQEISLDQLSQVIEAE-----QVFEWKIDSLLRFIVLISW 272
+ ++ + I D+L+ I E + F + +I+
Sbjct: 357 SDHQSEATVDTSPWPVVYTLLNSILNDELNSGISHELRKSVKGFLVRDKDEKYRSWMIAA 416
Query: 273 QDKKSILSMAKKFSLPREIRYFLISFF--------------------------------N 300
+++ + + +
Sbjct: 417 LSPWAMVDVKNPLTEDEVKKMAPHPARVARDSLRCEKKLTTLLSVAITHYGLISDVKTAF 476
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL-------- 352
N T KL L +L A+ + + + +L+
Sbjct: 477 VNGELNTCLADTRWKLAKLIRTLGADWRLCFIQAMLLDVMQGKAAELVLKDYLKMLQFLE 536
Query: 353 -SDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLR 409
+++ + G D++ PG + + L + I + + E + +R
Sbjct: 537 EQNLLDVYNLRPLVNGRDMIAALNAKPGAWLTSALEITVEWQIRNPDRSDAEGAIDEAIR 596
Query: 410 K 410
+
Sbjct: 597 R 597
>gi|19173101|ref|NP_597652.1| tRNA ADENILYL TRANSFERASE [Encephalitozoon cuniculi GB-M1]
gi|19168768|emb|CAD26287.1| tRNA ADENILYL TRANSFERASE [Encephalitozoon cuniculi GB-M1]
Length = 464
Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 15/164 (9%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIAT-TILPDRVM----------RIFSKTRYKVIPTSISY- 77
+ GG VRD +M D+DIA I + ++ K P +
Sbjct: 31 RVAGGWVRDKIMGNPSFDMDIALENISGYKFAVGLVQSATGQKLTDVHVIKDNPEKSKHL 90
Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137
T + D LR++ ++ R V + RRD TIN+L+ + + I+
Sbjct: 91 ETAVVRINGFCVDFVNLRNETYSETRIPNVKPGTPQEDAF-RRDLTINSLFYNLFTEEIE 149
Query: 138 YVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
G D+ + + D +L+D LR++R FRF + G
Sbjct: 150 DYTGRGLEDIGRKVLATPLDPRTTLLDDPLRLVRIFRFHSKLGF 193
>gi|256830853|ref|YP_003159581.1| metal dependent phosphohydrolase [Desulfomicrobium baculatum DSM
4028]
gi|256580029|gb|ACU91165.1| metal dependent phosphohydrolase [Desulfomicrobium baculatum DSM
4028]
Length = 440
Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 58/445 (13%), Positives = 136/445 (30%), Gaps = 52/445 (11%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQD--IDIATTILPDRVMRIFSK--TRY 68
+ +I + + + ++ A++ ++ + +D ++I T I + +F K
Sbjct: 6 KEAASICKTIMRNGYDAYVINAALQRKILG-TSKDAEVEICTDIDLAGLKNLFPKITAGS 64
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
I + G+ + + T + + D +L
Sbjct: 65 GDIVARMDQGSATFLFH-------PADMADASHPEACVAQITSNMLKKLDKDDGFPVSLA 117
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ D G ++ IKF G + DYLR +R RF A+Y ++ +
Sbjct: 118 CPFIPRSRDVYDGFENISGGQIKFQGIPDETLKHDYLRAIRALRFSANYHLPIEENSWMS 177
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQL 246
+++ L +S I E K+ A +++ I + ++ +S
Sbjct: 178 IIRASRRVLDYVSVTDIMDEWRKVEAENMWRFA-ELLFDSMILHGLVPELAALSRIFQVF 236
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKS----------------------------- 277
+ + ++E + + R+ + + +
Sbjct: 237 DEETGSRSIWEHTLKVMQRYPEELPYDWYGTLGCLFLNCGKLYAGEVYEDRTTFYQHHRI 296
Query: 278 ----ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333
+ K+ L E +++ + + + + F D
Sbjct: 297 GAKVARKILKRLRLNTEEVDMIVNLVRNHMRFHFMLTDKGIRRFKAV-DDYPRLIEMARA 355
Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKP-LFPLTGDDVVK-YGIPPGKKVGNILVHCKQE 391
+ N + + +++L ++ L G ++ I PG VG I + Q
Sbjct: 356 DIKARNANYTEFNHNMKMLERADIREELLEPLLNGKQIMDIARIKPGPAVGLIRDNLLQA 415
Query: 392 WINSSFQLSQEDLHHLLRKLIASSQ 416
I + E+ + A Q
Sbjct: 416 QIAGDV-NTVEEAERFVAAYKAKEQ 439
>gi|114567314|ref|YP_754468.1| RNA nucleotidyltransferase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338249|gb|ABI69097.1| putative RNA nucleotidyltransferase [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 273
Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 59/176 (33%), Gaps = 8/176 (4%)
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+ L L I+ D S + + + + + I+
Sbjct: 95 LRLAALLHDIDKPNSLTVDEDGEGYCYGHASGGSEIARTILGRLNFDRKTIKAVSAIIKE 154
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL--------QVL 352
+ + +S IK+L G + ++ LA + + + +VL
Sbjct: 155 HMNDFENISELSIKRLIRRVGPDNIDRLFELQLADIKGSKLSSRSPERITKTRNKCFEVL 214
Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
S ++G D+ G PPGK++G + + + IN+ ++ L LL
Sbjct: 215 SRREPLTVHDLDISGYDLFSLGYPPGKEIGEAMDYLLDQVINNPSLNQRDTLIALL 270
>gi|300708561|ref|XP_002996457.1| hypothetical protein NCER_100453 [Nosema ceranae BRL01]
gi|239605761|gb|EEQ82786.1| hypothetical protein NCER_100453 [Nosema ceranae BRL01]
Length = 296
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/262 (17%), Positives = 89/262 (33%), Gaps = 14/262 (5%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK---------TRYKVIPTSISY-G 78
+ GG VRD LM ++ D+DIA I ++ + ++ P +
Sbjct: 27 RVAGGWVRDKLMGINSYDMDIALENITGYEFAKLLEQKFKDSMSNVNVVQINPDKSKHLE 86
Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138
T D LR + TD R + + RRD TINAL+ + K ++
Sbjct: 87 TAVCRINGILIDFVNLRCEKYTDTRIPLITIGTAQEDAF-RRDLTINALFYNLITKEVED 145
Query: 139 VGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
G+ D++N+ ++ D +D LRILR FRF A + K
Sbjct: 146 FTGMGIKDIKNKILRTPLDPFITFSDDPLRILRLFRFKAKLNFDIYSEIQKSLNNLDLKL 205
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
+ I + + +++ +++ +A +
Sbjct: 206 HLKNKVSKERVNIEIFKMINYKYGYLGIHELIQYEYIESVFNLKLNKEKVLDYYQAIKEL 265
Query: 257 EWKIDSLLRFIVLISWQDKKSI 278
+ + + +I + +
Sbjct: 266 NDEEYRWIYNLYIIFLESSCQL 287
>gi|322780865|gb|EFZ10094.1| hypothetical protein SINV_15615 [Solenopsis invicta]
Length = 258
Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/251 (14%), Positives = 87/251 (34%), Gaps = 11/251 (4%)
Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
R RF+ +++ ++ +I L + + +
Sbjct: 6 RYFRFYGRIMDSPDQHDEATIKALKENIDGLQQISGERIWSEWSKILTGNFSLELTLKLL 65
Query: 226 YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
G + + ++ V + Q + + + ++ +D+ ++ + ++
Sbjct: 66 ECGASKHIGLPEQPD--IENFRNVYQRAQSNNVTLKPISLIVSML--KDEYEMIKLHERL 121
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345
L R + + +K Y V++ +K + L
Sbjct: 122 KLSNSDRDLALFLVQHREYKP------CEKPLKPYQKLVLLQTMKRYEILQEYVKELFRY 175
Query: 346 CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+Q+L + W P FP+ G +VK+ +P K G +L+ K+ WI++ F L+ E L
Sbjct: 176 NGAMQLLDEFERWTIPKFPVNGSMLVKH-VPIQKMTGKVLIELKRIWIDADFNLTSEQLM 234
Query: 406 HLLRKLIASSQ 416
+ ++ +
Sbjct: 235 EHVPNIVDELE 245
>gi|298529501|ref|ZP_07016904.1| metal dependent phosphohydrolase [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510937|gb|EFI34840.1| metal dependent phosphohydrolase [Desulfonatronospira thiodismutans
ASO3-1]
Length = 441
Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 52/442 (11%), Positives = 135/442 (30%), Gaps = 59/442 (13%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQD-----IDIATTILPDRVMRIFSK-- 65
+ + + + + ++ ++ + D +DI T + + ++F
Sbjct: 6 KEAAAVCKTIMRNGYDAYVI-----NAPLQERAMDQDHMEVDICTELDFTGLTKLFPSLE 60
Query: 66 -TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ S+ G + D+ T R + R + +
Sbjct: 61 TSGGLDFLGSLRQGQVTFNF--YPADVIESSYTDGTIARMTPRLVKRLEEMGDM-----P 113
Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
G DL + G + +DYLR ++ RF A++G I+
Sbjct: 114 LTWACPYIPDPRAVYDGFEDLDTGKVTLEGLPDETLKKDYLRAIKALRFSANFG-LPIEG 172
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
+ +A +++ + + S + + +EA+N + ++ I + ++ +S
Sbjct: 173 NTWLAILRSSRRVLDYVSVTDLMDEWRKVEAENMHRFVSLLFESMILHGLIPELASLSRV 232
Query: 245 QLSQVIE--AEQVFEWKIDSLLRFIVLISWQDKKS------------------------- 277
+ + E E V+E + + + + + +
Sbjct: 233 KQVKNQEEGLENVWEHTLGVMRYYPEELPYDWYGTMACLFHDVGKLFAAEYFHDRITFYQ 292
Query: 278 --------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329
+ K+ + + + + + F + D+
Sbjct: 293 HHRIGAKVARKILKRLRFNTDEIDLVCHLVRHHMRFHFMLTDRGIRRF-MALDEYPRLME 351
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDII-HWKKPLFPLTGDDVVKY-GIPPGKKVGNILVH 387
+ + + ++++ L++L L G +++++ GI PG VG I
Sbjct: 352 MVRADIKARDGSYKEFNHNLKMLQKAKVSEDTLEPLLNGHEIMEFTGIKPGPGVGVIREA 411
Query: 388 CKQEWINSSFQLSQEDLHHLLR 409
Q E + ++R
Sbjct: 412 LLQAQAAGDVTSVPEAIEFVMR 433
>gi|221140975|ref|ZP_03565468.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus
str. JKD6009]
Length = 51
Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT 52
IL + ++ VGG+VRD +M ++ DIDI T
Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITT 46
>gi|284053920|ref|ZP_06384130.1| polynucleotide adenylyltransferase region [Arthrospira platensis
str. Paraca]
Length = 282
Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 77/241 (31%), Gaps = 26/241 (10%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRV---MRIFSKTRYKVIPTSISYGTIKIICR 85
+ +VGGAVRD+L++ +V D+D+ +L + V I S + + +++
Sbjct: 25 AYLVGGAVRDALLSRAVGDLDLDFVVLSEAVNTAKTIASHYQAGFVLLDAERQIARVVFP 84
Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLND 144
D + D RRDFTIN + K D G D
Sbjct: 85 GVTVDFAQA--------------EGGSLEVDLGRRDFTINTIAYHPITKTFFDPYQGQQD 130
Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204
L+ ++ I + + +D LR+LR +R A G + A ++ +
Sbjct: 131 LKQGLMRMISREN--LADDPLRLLRGYRQAAQLGFVIEPETKQTIADLASLLPRVAAERI 188
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEWKIDS 262
L I I + D+L +
Sbjct: 189 RTELGYLLNTPLGVPKLIEA----WKIGLISPWFSSLGDRCDRLKNLDHVAAAVSQTYPP 244
Query: 263 L 263
L
Sbjct: 245 L 245
>gi|320037697|gb|EFW19634.1| tRNA nucleotidyltransferase [Coccidioides posadasii str. Silveira]
Length = 539
Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 63/507 (12%), Positives = 139/507 (27%), Gaps = 113/507 (22%)
Query: 15 LINILSLLNKGEDK-----------SCIVGGAVRDSLMNLSVQDIDIATTI-----LPDR 58
L++++ + + K GG VRD L+ + DID+ +
Sbjct: 21 LLDVVEYIKQKGAKNGDKSIPQDVVLRFTGGWVRDKLLGVDSNDIDVGISTMTGYKFGVE 80
Query: 59 VMRIFSK-----------------------TRYKVIPTSISY-GTIKIICRKKYFDITTL 94
+ + + P + T+ D+ L
Sbjct: 81 LKEYLDNPEHLEKYKSFHSDDALKSVIGGLHKIEANPEKSKHLETVATKIFGLEVDLVNL 140
Query: 95 RSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKF 152
R + +D + + D+LRRD T+NAL+ + ++ G+ DLR I+
Sbjct: 141 RKETYSDHSRHPEMEFGTAEEDALRRDATVNALFYNLHTSSVEDFTGRGIADLRAHLIRT 200
Query: 153 IGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW-----S 207
+ + +D LR+LR RF + G K + K L +
Sbjct: 201 PLEPYQTFKDDPLRVLRLIRFSSRLGYKIDPNTEESMQHDDIKDALKLKISQERIGAEVE 260
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLD-----------------------VQEISLD 244
++ K + L+ I + D E+++
Sbjct: 261 KMLKGPDPLMALHIIERLGLYDTIFANHQDDVVVDVSSWSRAYESLMAILDDNYNEVTIS 320
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
Q S+ + + D+ +++ +++ + +E+ +
Sbjct: 321 QESRATLRSILIRHREDT--YHSWMLAALSPWAVVPQKEPPPNKKELPPRPSMVARDSLR 378
Query: 305 QKTLSIPEIKKLFYLYG----------------------------------DKVMIAKLK 330
++ +K YG + +
Sbjct: 379 ADNKTVDILKSGAKHYGMVSDLKSAFLNRELGKILPDIRWRIGRSIRIMGAEWRLCFIQA 438
Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWK-----KPLFPLTGDDVV-KYGIPPGKKVGNI 384
+ L + + ++ L I G + G PG +
Sbjct: 439 VLLEIMQGEEAGKVFSEYVEFLLYIKEQNMLDVDALRPLANGHQLASALGAMPGPWMSKA 498
Query: 385 LVHCKQEWINSSFQLS-QEDLHHLLRK 410
L + + + + + + R+
Sbjct: 499 LEMVIEWQLRNPERDDGDGAIAEVKRR 525
>gi|239623570|ref|ZP_04666601.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521601|gb|EEQ61467.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 261
Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 49/146 (33%), Gaps = 10/146 (6%)
Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF---- 332
+ + + R ++ + ++ G + L++F
Sbjct: 105 MTGRIMDRLGFDHDTREKVVELVKYHDLDLHGKHKSVRTWLNRLGKEQFYRLLEVFRCDA 164
Query: 333 ------LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386
N T + + ++L+ ++ +TG D+++ G P G++VG +L
Sbjct: 165 AGQNPEYLEADNARTDRVEAVLDEILATENCFRIKDLAVTGHDLIRMGCPQGRQVGEMLQ 224
Query: 387 HCKQEWINSSFQLSQEDLHHLLRKLI 412
+ + + E L R+ +
Sbjct: 225 RLWEAVSSGAVSNEPELLLDKAREWL 250
>gi|331231585|ref|XP_003328456.1| tRNA nucleotidyltransferase [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309307446|gb|EFP84037.1| tRNA nucleotidyltransferase [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 566
Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 57/262 (21%), Positives = 100/262 (38%), Gaps = 43/262 (16%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVM----------RIFSKTRYKVIPTSISY 77
I GG VRD L+ + D+DIA ++ + + T+
Sbjct: 47 LRIAGGWVRDKLLGVQSNDLDIAISSLTGQDFATRFSSYLRDQQRLKREGQSENQTTKEA 106
Query: 78 G--------------------------TIKIICRKKYFDITTLRSDLI--TDGRYAKVVF 109
G T D LRS+ D R V
Sbjct: 107 GDGGEETFELGKIATIEARPDQSKHLETATTTFLGLDLDFVQLRSEEYGDQDSRIPSSVR 166
Query: 110 TRDWKADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRI 167
D+LRRD TIN+L+ + I+ G DL I+ A H +D LR+
Sbjct: 167 FGTPLEDALRRDITINSLFYNVHTGAIEDHTGKGLEDLEVGLIRTPLPAEHTFKDDPLRL 226
Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHM 225
LR RF +G + A+ + + + +S ER+ +E++K+L+ ++PL+++ +
Sbjct: 227 LRCIRFATRFGFRLDADIVSAATSEPIRVALKEKISRERVGTEVDKMLKGRDPLSSLKMI 286
Query: 226 YNGGIFKEIFLDVQEISLDQLS 247
G++K +F + + + +
Sbjct: 287 EELGLYKLVFSPPKSLKEETID 308
>gi|255027110|ref|ZP_05299096.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL J2-003]
Length = 257
Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/263 (13%), Positives = 77/263 (29%), Gaps = 13/263 (4%)
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
N+ IK +G A R ED LR++R RF + + +
Sbjct: 2 NKAIKAVGKASERFHEDALRMMRGVRFLSQLDFQLDSETEKALESQIGLLQHTSVERITV 61
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
+ + + + L ++ +L + ++ D++
Sbjct: 62 EWLKMIKGPAIRRAMDLLLKVEMETYLPGLKGEKKALTEFGSWDWGKR---TTDDAIWLG 118
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
+V+ + + A K + + + Y G V
Sbjct: 119 LVVTVQPNNVNAFLKAWKLPNKTIQLVSKAYQYALKMK-----ETWLAEELYHAGKAVFS 173
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNIL 385
++ + N H+ + Q + K +TG D++K+ G G V L
Sbjct: 174 LVNELNIIRGKENNQHK----LSQAYEALPIHSKKDLAITGADLLKWSGESAGPWVKETL 229
Query: 386 VHCKQEWINSSFQLSQEDLHHLL 408
+ +++ + + L
Sbjct: 230 DKLECGVLSNEINNEKNQIKRWL 252
>gi|281205388|gb|EFA79580.1| tRNA ADENILYL transferase [Polysphondylium pallidum PN500]
Length = 496
Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 56/302 (18%), Positives = 111/302 (36%), Gaps = 38/302 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQ-----DIDIATTI-LPDRVMRIFSKTRY-----------KV 70
+ + GG VR+ L+++ DIDIA + + + R +
Sbjct: 112 ELRVSGGWVRNKLLSIDSSSSGYFDIDIAISGITGREFVDLIEHYRIEHGLSQKKYLVRR 171
Query: 71 IPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
P + T I+ FD T LR++ + D+ RRD TIN+LY
Sbjct: 172 NPDKSKHLETASIVIDGYTFDFTGLRAEQYDTHTRIPQIVDGTPTTDAFRRDITINSLYF 231
Query: 130 DQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------EK 180
+ + ++ G++DL N+ I+ H ++ED LR LR RF + +
Sbjct: 232 NLETYRVEDFTGNGIDDLCNKYIRTPLSPHITLIEDPLRALRVLRFATRFHFNIDPSLYR 291
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+I+S + +++ K + + +E + A +V + + +Q
Sbjct: 292 SIESIEVRSALGYKVSKERIKNEFSLMMSSYDSGAIQYFRYLVDTNLVDVVFQSTGSIQI 351
Query: 241 ISLDQLSQVIEAEQVFEWKIDS-----------LLRFIVLISWQDKKSILSMAKKFSLPR 289
D L + E +K +L + + + D ++ + + F +
Sbjct: 352 TKEDWLLSLNYLEHSLRFKHQLSKEMQEDFILGVLMLPLKLKYHDALNLEYLLEHFKSSK 411
Query: 290 EI 291
+
Sbjct: 412 KQ 413
>gi|258406007|ref|YP_003198749.1| tRNA adenylyltransferase [Desulfohalobium retbaense DSM 5692]
gi|257798234|gb|ACV69171.1| tRNA adenylyltransferase [Desulfohalobium retbaense DSM 5692]
Length = 368
Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 61/398 (15%), Positives = 111/398 (27%), Gaps = 60/398 (15%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPD-RVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGG+VRD+ + QD D + R F + + + +
Sbjct: 2 RIYLVGGSVRDAFLGRPRQDRDYVVLQTTEDEFKRCFPRAK----RVGRD--SPVFLLDG 55
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDL 145
+ +++ D AD RD T+NAL D + DL
Sbjct: 56 DEYTVSSA----------------ADITADLETRDLTVNALARDVATGTLYAHPQAETDL 99
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSE 203
+ R ++ + A+ D LR+ R RF A + E + SD L + + L ++E
Sbjct: 100 QRRVLRPVCAAN--FRADPLRVYRAARFAACWPEWRVHSDLLAVMHEVGQAGLLSQPAAE 157
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-----------EISLDQLSQVIEA 252
R+ E+ + L+ P + + G F + Q S L+
Sbjct: 158 RVGGEVRRALQGVRPGRFLSLIVQTGCLGAWFAEWQGAEAIPAGPPAYHSGSVLAHTCRV 217
Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE-----IRYFLISFFNCNFNQKT 307
+ + + + +
Sbjct: 218 VDELAGSETAAWMGWCHDMGKAGTPAKLWPHHYRHEHRGEAMAWQQGQRLRLPKRLIRAG 277
Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---------DTCFILQVLSDIIHW 358
L Y +L + L LH L + ++ +D+
Sbjct: 278 GIAARWHMLAGRYDALRAGTQLDLVLRLHRAGLVEPFCELARADGSPGLLPRMEADLTRV 337
Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396
P K G G G L + +
Sbjct: 338 LAVSLPAN-----KRG--QGPASGEYLRQLQIRALRGG 368
>gi|323699855|ref|ZP_08111767.1| metal dependent phosphohydrolase [Desulfovibrio sp. ND132]
gi|323459787|gb|EGB15652.1| metal dependent phosphohydrolase [Desulfovibrio desulfuricans
ND132]
Length = 444
Score = 66.8 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/451 (10%), Positives = 121/451 (26%), Gaps = 61/451 (13%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQD-------IDIATTILPD 57
+ + D + + + + I+ VR + D +DI T D
Sbjct: 1 MSQPF---KDAVGFCKTIMRNGFDAYII--NVR---LQALTLDETGSEQELDICTEAPFD 52
Query: 58 RVMRIFSKTRYKVIPTSISYGTI-KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD 116
+ + F + S GT+ + + +D T
Sbjct: 53 ELKKYFP-----TMEESSDKGTLGTLAEGGVTYFFYPAATDEAAYTDEVVSTMTPRLMKR 107
Query: 117 SLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
RR + + + D I+F G + +DY R RF A+
Sbjct: 108 LERRGDIPLSAVCPLIPRAKETYADFADFAEGQIRFKGIPDQALKKDYSLAYRAMRFAAN 167
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ ++ + +++ L + E K+ +++ + +
Sbjct: 168 FDKEIEANSWAAIVRCSRRVLDYVPMADFLDEWRKVEAEAM-HKFFSLLFDSMLLHGLIP 226
Query: 237 DVQEISLDQLSQVIE---AEQVFEWKIDSLLRFIVLISWQDKKSI--------------- 278
++ +S + E E V +D + + + + ++
Sbjct: 227 EIAALSRVSQIRNPEENVEETVLAHTLDVMKAYPEELPYDWFGAVACLFHDIGKLYTAEY 286
Query: 279 ------------------LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+ K+ + + + + + +
Sbjct: 287 YDGRWNFLQHHRVGAKVTRKVLKRLRFEEQDIDLICDLVQNHMRPHFMLTDKGIRRLRSL 346
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-LFPLTGDDVVKY-GIPPG 378
D+ + + N + ++ L++ L G+ +++ + PG
Sbjct: 347 -DEYPRIMEMVRADIKARNGSWREFNHNLKMAERADIPDLELEPLLDGNRIMELAKLKPG 405
Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+G I + + +E +L
Sbjct: 406 PAIGKIRDQLLEAQVRDDVSTVEEAEDFVLD 436
>gi|302779736|ref|XP_002971643.1| hypothetical protein SELMODRAFT_25836 [Selaginella moellendorffii]
gi|300160775|gb|EFJ27392.1| hypothetical protein SELMODRAFT_25836 [Selaginella moellendorffii]
Length = 197
Score = 66.8 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 18/169 (10%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRI----FSKTR-------YKVIPTSIS 76
+ GG VRD L+ + D+DIA + + KT K P
Sbjct: 1 VRVAGGWVRDKLLGVESHDLDIALDDMTGQQFCDRVVPCLRKTDPSCSYKVIKSNPERSK 60
Query: 77 Y-GTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+ T K+ D+ LRS+ ++ R + D+ RRD TIN+L+ +
Sbjct: 61 HLETTKLEILGGEIDVVNLRSETYSNDSRIPTSMKFGTPSEDAYRRDLTINSLFYNVAAD 120
Query: 135 VIDYVG----GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
++ + DL+ I+ L+D LR+LR RF A +
Sbjct: 121 KVEDFTGRGLCVTDLKLGKIRTPLSPLVTFLDDPLRVLRSIRFAARFNF 169
>gi|312213715|emb|CBX93717.1| similar to tRNA nucleotidyltransferase [Leptosphaeria maculans]
Length = 958
Score = 66.8 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 44/248 (17%), Positives = 89/248 (35%), Gaps = 39/248 (15%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPD----RVMRIFS----KTRYKVIPTSIS--- 76
GG VRD L+N+ DID+A + + ++ ++ +I
Sbjct: 91 LRWTGGWVRDKLLNIESHDIDLAINKLTGEHFGLKMQEYLRIPGNAEKHGLIAEGEKLSD 150
Query: 77 -----------YG------------TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW 113
+ T D+ LR + + +
Sbjct: 151 SDRTKKIAPGLHKIEANPEKSKNLETATTKILGIDLDLVNLRKETYNEVSRNPQMEFGTA 210
Query: 114 KADSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171
+ D++RRD T+NA++ + ++ G D+ R I+ + + +D LR+LR
Sbjct: 211 EEDAMRRDATVNAMFYNLHTCEVEDFTKRGHEDMAARIIRTPLEPYQTFKDDPLRVLRLI 270
Query: 172 RFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229
RF + + + + +S ER+ E+ K+L+ A+ + G
Sbjct: 271 RFASRLDYTIEPETAKAMGNPEIQDVLKIKISRERVGIELEKMLKGPRSRMALELIDRFG 330
Query: 230 IFKEIFLD 237
+++ +F D
Sbjct: 331 LYRTVFTD 338
Score = 43.3 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 362 LFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
L G D+ PG + + L + + ++
Sbjct: 545 KPLLKGTDLAKALNTKPGPWMKDALDVVMAWQLRNPDTTDPAQAIEAVK 593
>gi|115373987|ref|ZP_01461277.1| hypothetical protein STIAU_3379 [Stigmatella aurantiaca DW4/3-1]
gi|115368994|gb|EAU67939.1| hypothetical protein STIAU_3379 [Stigmatella aurantiaca DW4/3-1]
Length = 274
Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 13/222 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73
+ +++ LL + +VGGA RD L V+D+D++ I + + P
Sbjct: 33 IQDVIELLQGRGMRVFVVGGACRDWLTGEPVKDVDLSLDRPVKEAHAILRQAFPGMDPVL 92
Query: 74 --SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW------KADSLRRDFTIN 125
+ +GT + L ++T + + D+L RDF++N
Sbjct: 93 RRNERFGT--LSWGDAALGGVDLNILRSHHDIQNDDMWTTSFVAREDLREDALTRDFSMN 150
Query: 126 ALYADQQGK--VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
A Y + + D +G + + + + Y R +F +
Sbjct: 151 AFYYPCHEEGRLWDPLGCGVEDLRGRVLRLITHPRVLSTSYRTTFRIIQFLCRGYVPAPN 210
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
+ + W + + +
Sbjct: 211 IHEHLERFADHDIQGMGDRLLNWLPNHLGKDPALWREFRQRL 252
>gi|218885523|ref|YP_002434844.1| metal dependent phosphohydrolase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756477|gb|ACL07376.1| metal dependent phosphohydrolase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 471
Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/213 (22%), Positives = 76/213 (35%), Gaps = 27/213 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K+ +VGGAVRD L+ + D D+A F +
Sbjct: 2 KTYLVGGAVRDLLLGRPIHDYDVAFEGD----TACFVRQNPGARKVGRD----------- 46
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
D+ L R D RDFTINAL + G + + L DL +
Sbjct: 47 -VDVYLLDGVEHMPLR-------GTLDEDLAARDFTINALALGEAGMLHAHPLALRDLAD 98
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL--KILSSERI 205
R ++ + + +R R RF A + + ++ L +G L +E++
Sbjct: 99 RVLRPASPTA--LPDSPVRAFRAARFAAQFPDFSVHPQTLEQMRAVAQGGALADLPAEQV 156
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238
E K L A P + ++ GG F ++
Sbjct: 157 CRETLKALAAPCPGRYLKVLHAGGCLPPWFAEL 189
>gi|302841713|ref|XP_002952401.1| hypothetical protein VOLCADRAFT_105460 [Volvox carteri f.
nagariensis]
gi|300262337|gb|EFJ46544.1| hypothetical protein VOLCADRAFT_105460 [Volvox carteri f.
nagariensis]
Length = 536
Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 1/101 (0%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ +++ L GG VRD + DID+ T ++ +F + ++
Sbjct: 81 AALAVVAKLRSHGYTGMFAGGWVRDQFLGRPSADIDLVTNATTVQIFDVFGPRQCRLKGA 140
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK 114
+ TI + T + + + +
Sbjct: 141 CRDF-TINALFFDPKLPQPTSQPTSQPTSQPPATSQHQQQQ 180
>gi|332753112|gb|EGJ83496.1| poly A polymerase head domain protein [Shigella flexneri 4343-70]
Length = 387
Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 55/320 (17%), Positives = 107/320 (33%), Gaps = 22/320 (6%)
Query: 52 TTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV--- 108
P ++ + + P + + + + R++ + Y
Sbjct: 2 VGSTPQEMLDAGYQQVGRDFPVF--------LHPQTHEEYALARTERKSGSGYTGFTCYA 53
Query: 109 -FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167
+ D RRD TINAL D G++ID GL DL+NR ++ + ED LR+
Sbjct: 54 APDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRLLRHV---SPAFGEDPLRV 110
Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKKGLK----ILSSERIWSEINKLLEAKNPLNAIV 223
LR RF A Y ++ + L+ ER+W E L +NP
Sbjct: 111 LRVARFAARYAHLGFRIADETLTLMREMTHAGELEHLTPERVWKETESALTTRNPQVFFQ 170
Query: 224 HMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK 283
+ + G + +F ++ + E L ++S Q ++
Sbjct: 171 VLRDCGALRVLFPEIDALFGVPAPARWHPEIDTGIHTLMTLSMAAMLSPQVDVRFATLCH 230
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
+ + + + + + E + + + +A+L
Sbjct: 231 DL--GKGLTPPELWPRHHGHGPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIRTFPM 288
Query: 343 QDTCFILQVLSDIIHWKKPL 362
+ I+++ I W+KP
Sbjct: 289 LNPKTIVKLFDSIDAWRKPQ 308
>gi|119175111|ref|XP_001239837.1| hypothetical protein CIMG_09458 [Coccidioides immitis RS]
Length = 625
Score = 66.4 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 64/507 (12%), Positives = 138/507 (27%), Gaps = 113/507 (22%)
Query: 15 LINILSLLNKGEDK-----------SCIVGGAVRDSLMNLSVQDIDIATTI-----LPDR 58
L++++ + + K GG VRD L+ + DID+ +
Sbjct: 107 LLDVVEYIKQKGAKNGDKSIPQDVVLRFTGGWVRDKLLGVDSNDIDVGISTMTGYKFGVE 166
Query: 59 VMRIFSK-----------------------TRYKVIPTSISY-GTIKIICRKKYFDITTL 94
+ + + P + T+ D+ L
Sbjct: 167 LKEYLDNPEHLEKYKSFHSDDALKSVIGGLHKIEANPEKSKHLETVATKIFGLEVDLVNL 226
Query: 95 RSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKF 152
R + +D + + D+LRRD T+NAL+ + ++ G+ DLR I+
Sbjct: 227 RKETYSDHSRHPEMEFGTAEEDALRRDATVNALFYNLHTSSVEDFTGRGIADLRAHLIRT 286
Query: 153 IGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW-----S 207
+ + +D LR+LR RF + G K + K L +
Sbjct: 287 PLEPYQTFKDDPLRVLRLIRFSSRLGYKIDPNTEESMQHDDIKDALKLKISQERIGAEVE 346
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLD-----------------------VQEISLD 244
++ K + L+ I + D E+++
Sbjct: 347 KMLKGPDPLMALHIIERLGLYDTIFANHQDDVVVDVSSWSRAYESLMAILDDNYNEVTIS 406
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
Q S+ + + D+ +++ +++ + +E+ +
Sbjct: 407 QESRATLRSILIRHEEDT--YHSWMLAALSPWAVVPQKEPPPNKKELPPRPSMVARDSLR 464
Query: 305 QKTLSIPEIKKLFYLYG----------------------------------DKVMIAKLK 330
++ +K YG D +
Sbjct: 465 ADNKTVDILKSGAKHYGMVSDLKSAFLNRELGKTLPDIRWRIGRSIRIMGADWRLCFIQA 524
Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWK-----KPLFPLTGDDVV-KYGIPPGKKVGNI 384
+ L + + ++ L I G + G PG +
Sbjct: 525 VLLEIMQGEEAGKVFSEYVEFLLYIKEQNMLDVDALRPLANGHQLASALGAMPGPWMSKA 584
Query: 385 LVHCKQEWINSSFQLS-QEDLHHLLRK 410
L + + + + + R+
Sbjct: 585 LEMVIGWQLRNPERDDGDGAIAEVKRR 611
>gi|330937476|ref|XP_003305586.1| hypothetical protein PTT_18480 [Pyrenophora teres f. teres 0-1]
gi|311317307|gb|EFQ86312.1| hypothetical protein PTT_18480 [Pyrenophora teres f. teres 0-1]
Length = 902
Score = 66.4 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 47/265 (17%), Positives = 96/265 (36%), Gaps = 39/265 (14%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPD----RVMRIF--- 63
D+ + + L K + GG VRD L+ + DID+A + + ++
Sbjct: 39 DATAVQVPEQLAKEKITLRWTGGWVRDKLLKVGSNDIDVAINKMTGEHFGLKMQEYLEIP 98
Query: 64 ----------------SKTRYKVIPTS-----------ISYGTIKIICRKKYFDITTLRS 96
++ + K I + T D+ LR
Sbjct: 99 GNAEKHGLIEPNDDLNARDKTKKIAPGLHKIEANPEKSKNLETATTKIMGIDLDLVNLRK 158
Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIG 154
+ + + + D++RRD T+NA++ + ++ G +D+ + I+
Sbjct: 159 ETYNEVSRNPQMEFGTAEEDAMRRDATVNAMFYNLHTCQVEDFTGRGHDDMAAKIIRTPL 218
Query: 155 DAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKL 212
+ + +D LR+LR RF + + +S ER+ E+ K+
Sbjct: 219 EPYQTFKDDPLRVLRLIRFASRLDYTIEPETAKAMGNADIQDVLKIKISRERVGIELEKM 278
Query: 213 LEAKNPLNAIVHMYNGGIFKEIFLD 237
L+ P A+ + G+++ +F D
Sbjct: 279 LKGPRPRMALELIDRFGLYRTVFTD 303
Score = 44.0 bits (102), Expect = 0.042, Method: Composition-based stats.
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 354 DIIHWKKPLFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+I+ L G D+ G PG + + L + + ++
Sbjct: 485 EILEADTFRPLLKGTDLAKALGTKPGPWMKDALDVVMAWQLRNPDVTDPAAAIEAVK 541
>gi|255075005|ref|XP_002501177.1| predicted protein [Micromonas sp. RCC299]
gi|226516440|gb|ACO62435.1| predicted protein [Micromonas sp. RCC299]
Length = 971
Score = 66.4 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82
+VGGAVRD LM + +D D+ T ++ R ++ I + +
Sbjct: 263 VVGGAVRDLLMGKTPRDFDLITDATWRQIKRRM---GHRAIIVGRRFRVAHV 311
>gi|195953961|ref|YP_002122251.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Hydrogenobaculum sp. Y04AAS1]
gi|195933573|gb|ACG58273.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Hydrogenobaculum sp. Y04AAS1]
Length = 529
Score = 66.4 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 76/493 (15%), Positives = 148/493 (30%), Gaps = 117/493 (23%)
Query: 29 SCIVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSKTRYKVIPTS----------- 74
+ +VGG VRD ++ + D+DI TT P V F + ++
Sbjct: 37 AFLVGGYVRDRIIGKPIDKSVDVDIITTQEPITVANRFKELLFQTYNIKADVFEFEKKEP 96
Query: 75 --ISYGTIKIICRKKYFDITTLRSDLITDG--------RYAKVVFTRDWKADSLRRDFTI 124
I+ + F ++ G R + + + D RDFT
Sbjct: 97 WIKRNKIATIVFNEGSFKYR-FDIAILESGGLKSFFGLRPGPEEWEKILEKDLKDRDFTC 155
Query: 125 NALYADQQG---------KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
NA+ + + D GG+ DL N ++ I + + +D +R+LR R A
Sbjct: 156 NAIAVNLDDVLSVGAQQTILFDPTGGIKDLENGLVRAISYEN--LKKDPIRLLRGVRI-A 212
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
+ E ++ + + +K + ERI E+ KLL+ K + ++ I
Sbjct: 213 NELEFELEEGFINFLKENHTLIKTSAKERIAVELFKLLKLKKSYKGMELLFETNAIYSII 272
Query: 236 LDVQEIS-------------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282
+++I +V E D +L + + +
Sbjct: 273 PYLEDIKKVSNQGHHHIYPLDKHTLKVYEYADKILENEDVNFDKELLYFIKSQIAAYQFL 332
Query: 283 KKFSLPREIR-----------------------YFLISFFNCNFNQKTLSIPEIKKLFYL 319
F I+ ++ K + +
Sbjct: 333 GDFGTKEAIKLSALLHDIGKPHTMKIDEKGNITFYEHDKVGEELTAKISNELTFGEDLSR 392
Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD---------- 369
+ K++ L+IF +L H ++L ++ PL LT D
Sbjct: 393 FLKKMVRMHLRIFYL--RESLEHLTPRAYGKLLREVEDDIYPLMILTIADALGSKDDEPT 450
Query: 370 ----------VVKY----------------------GIPPGKKVGNILVHCKQEWINSSF 397
++++ IP G VG + +
Sbjct: 451 MKALEKTIKNIIEFKLKNVPKRIEPLLSGKDIMNILNIPEGPTVGLLKNKLLDLQYEGAI 510
Query: 398 QLSQEDLHHLLRK 410
+ +E + L ++
Sbjct: 511 KTKEEAIEWLKKE 523
>gi|302779734|ref|XP_002971642.1| hypothetical protein SELMODRAFT_25834 [Selaginella moellendorffii]
gi|300160774|gb|EFJ27391.1| hypothetical protein SELMODRAFT_25834 [Selaginella moellendorffii]
Length = 197
Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 65/169 (38%), Gaps = 18/169 (10%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRI----FSKTR-------YKVIPTSIS 76
+ GG VRD L+ + D+DIA + + KT K P
Sbjct: 1 VRVAGGWVRDKLLGVESHDLDIALDDMTGQQFCDRVVPCLRKTDPPCSYKVIKSNPERSK 60
Query: 77 Y-GTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+ T K+ D+ LRS+ + R + D+ RRD TIN+L+ +
Sbjct: 61 HLETTKLEILGGELDVVNLRSETYSKDSRIPTSMKFGTPSEDAYRRDLTINSLFYNVAAD 120
Query: 135 VIDYVG----GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
++ + DL+ I+ L+D LR+LR RF A +
Sbjct: 121 KVEDFTGRGLCVKDLKLGKIRTPLPPLVTFLDDPLRVLRSIRFAARFNF 169
>gi|331231557|ref|XP_003328442.1| tRNA nucleotidyltransferase [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309307432|gb|EFP84023.1| tRNA nucleotidyltransferase [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 254
Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 45/193 (23%), Positives = 64/193 (33%), Gaps = 41/193 (21%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVM----------RIFSKTRYKVIPTSISY 77
I GG VRD L+ + D+DIA ++ + + T+
Sbjct: 47 LRIAGGWVRDKLLGVQSNDLDIAISSLTGQDFATRFSSYLRDQQRLKREGQSENQTTKEA 106
Query: 78 G--------------------------TIKIICRKKYFDITTLRSDLI--TDGRYAKVVF 109
G T D LRS+ D R V
Sbjct: 107 GDGGEETFELGKIATIEARPDQSKHLETATTTFLGLDLDFVQLRSEEYGDQDSRIPSSVR 166
Query: 110 TRDWKADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRI 167
D+LRRD TIN+L+ + I+ G DL I+ A H +D LR+
Sbjct: 167 FGTPLEDALRRDITINSLFYNVHTGAIEDHTGKGLEDLEVGLIRTPLPAEHTFKDDPLRL 226
Query: 168 LRFFRFFAHYGEK 180
LR RF +G +
Sbjct: 227 LRCIRFATRFGYR 239
>gi|225849029|ref|YP_002729193.1| poly A polymerase [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644469|gb|ACN99519.1| poly A polymerase [Sulfurihydrogenibium azorense Az-Fu1]
Length = 299
Score = 66.0 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 54/266 (20%), Positives = 95/266 (35%), Gaps = 31/266 (11%)
Query: 19 LSLLNKG---EDKSCIVGGAVRDSLMNLS---VQDIDIATTILPDRVMRIFSKTRYKVIP 72
+L+K IVGG VRD L+N DID T P V + K I
Sbjct: 39 FDILSKALPRGSFCFIVGGWVRDRLINRPLGKNIDIDFIVTAPPMEVAKNLKKYINGSIF 98
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK---------ADSLRRDFT 123
T+ ++ + + + K D L RDFT
Sbjct: 99 QFEKEKTVVSFIFQENDYNYRFDFSYLDISDIISSDLSYEEKEEKILDRLVQDLLSRDFT 158
Query: 124 INALYADQQG---------KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
INA+ + +ID G D++ ++ I + I++D +RILR +R
Sbjct: 159 INAIAVNFDDTSGLSASHTTLIDPSNGFKDIQEGIVRPISLEN--IVKDPVRILRGYRLS 216
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
+D + L+ ERI E+ K++ +N + + + + ++
Sbjct: 217 LELDF-KLDKEFEKFVKNNVDLLEKSPKERIRDELLKIVSNENSYSTLEKLKENKVLSKV 275
Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKI 260
L++LS E++ + +
Sbjct: 276 VSQ----GLEELSTYKNVEEILKKNL 297
>gi|317154884|ref|YP_004122932.1| metal-dependent phosphohydrolase HD sub domain-containing protein
[Desulfovibrio aespoeensis Aspo-2]
gi|316945135|gb|ADU64186.1| metal-dependent phosphohydrolase HD sub domain protein
[Desulfovibrio aespoeensis Aspo-2]
Length = 441
Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/451 (10%), Positives = 116/451 (25%), Gaps = 61/451 (13%)
Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQD-------IDIATTILPD 57
+ + D + + + + +V VR + D +DI T
Sbjct: 1 MSQPF---KDAVGFCKTIMRNGYDAYVV--NVR---LQALTLDQTGSERELDICTEAGFS 52
Query: 58 RVMRIFSKTRYKVIPTSISYGTI-KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD 116
+ + F I S GT+ + + D + A T
Sbjct: 53 ELQKYFPS-----IVESRDKGTLGTLNEGGVTYFFYPADVDDASYTEEAVSTMTPRLLRR 107
Query: 117 SLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176
+R + K D D I+F G + +DY R RF A+
Sbjct: 108 LEKRGDIPLSAVCPFIPKAKDLYADFADFSEGFIRFKGVPDQALKKDYSLAYRALRFAAN 167
Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+ + + + ++ L + E K+ +++ + +
Sbjct: 168 FDKDIEANSWIAIVRNVRRVLDYVPMSDFLDEWRKVEAESM-HRFFRLLFDSMLLHGLIP 226
Query: 237 DVQEISLDQL--------------SQVIEAEQVFEWKIDSLL------------------ 264
++ +S Q + + E
Sbjct: 227 EIAALSRVQQIRNADSDALETVLEHTLASMKAYPEELPYDWFGTVACLFHDVGKLYTAEF 286
Query: 265 ----RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+ K + K+ + + + + + +
Sbjct: 287 YEGRWNFLQHHRVGAKVTRKILKRLRFEEQDIELICDLVKNHMRPHFMLTDKGIRRLRSL 346
Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH-WKKPLFPLTGDDVVKY-GIPPG 378
D+ + + + ++ L++ + L G+ ++ G+ PG
Sbjct: 347 -DEYPRIMEMVRADIKARGGSWREFNHNLKMAERADIPEDEIEPLLDGNKIMIITGLKPG 405
Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+G I + I + ++ +LR
Sbjct: 406 PIIGVIREALLKAQIANDVSSMEQAEAFVLR 436
>gi|251771595|gb|EES52171.1| Polynucleotide adenylyltransferase region [Leptospirillum
ferrodiazotrophum]
Length = 380
Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 26/173 (15%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
+ + +L+ L + +VGGAVRD +D+D + + K +P
Sbjct: 17 ECLPLLAPLFRAGIPVWLVGGAVRDLREGRVPRDLDFVAEAE----VECLRRYLPKAVPV 72
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVF--TRDWKADSLRRDFTINALYADQ 131
T+ + K GR + R AD RRDF++NA+
Sbjct: 73 GGKNSTLVLSLGK---------------GRAPLEISGAGRGIHADLERRDFSVNAMAWRV 117
Query: 132 -----QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
+G+++D GG DL ++ + ED +RILR RF + G
Sbjct: 118 APAGLEGEILDPFGGREDLGKGILRVPLASRDPFREDPVRILRLLRFVSTRGY 170
>gi|227872942|ref|ZP_03991243.1| possible tRNA adenylyltransferase [Oribacterium sinus F0268]
gi|227841216|gb|EEJ51545.1| possible tRNA adenylyltransferase [Oribacterium sinus F0268]
Length = 243
Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/223 (10%), Positives = 69/223 (30%), Gaps = 15/223 (6%)
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ-----VF 256
+ + K+ + + + + + + + L +S E E+ +
Sbjct: 17 MLALRENLGKVSKERIAVELVKLLCSRHPERVKLLFSTGLSDFVTRHFSEIEKRGIPSLL 76
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
D + L+ + + ++ L RE +F ++ S ++K
Sbjct: 77 GNAKDKKYLRLGLLLRHLPEYAKEILEELKLDRECIDQAFAFVELFSLEEADSPYALRKR 136
Query: 317 FYLYGDKVMIAKLKIFLAL----------HYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
YG +++ L ++ ++ + + +
Sbjct: 137 LSRYGLELIQDFYDTKALLLENVSNTPGKAMAEQVQLRLSWLQKIQEEGDCYTLSNLAIK 196
Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G D++ G+ G +G +L + + + +E L ++
Sbjct: 197 GKDLLSIGVQAGPAMGELLHQALDYVMLNPSENEREALLSFVK 239
>gi|206895388|ref|YP_002246809.1| polynucleotide adenyltransferase [Coprothermobacter proteolyticus
DSM 5265]
gi|206738005|gb|ACI17083.1| polynucleotide adenyltransferase [Coprothermobacter proteolyticus
DSM 5265]
Length = 324
Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/305 (17%), Positives = 95/305 (31%), Gaps = 53/305 (17%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTIL-PDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGG +RD ++ +D DI + P + T + I K
Sbjct: 43 FLVGGCLRDIILGKPPKDYDIISDAHVPFE----------PKVVLGKDVLTYRYIIGGKI 92
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148
D+++ + + +RDF +NA+ D QG D GGL DL NR
Sbjct: 93 VDVSS--------------------QLNLQKRDFPMNAMALDFQGNYYDPRGGLEDLFNR 132
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208
+ R+ ED +R+LR + A G + + L+ ++ R++ E
Sbjct: 133 QLSVE---KERLEEDPIRVLRAAKLCAELGLTPVGD-----KVDGLLLLRQVNEGRLYQE 184
Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV---IEAEQVFEWKIDSLLR 265
K++ + L AI + + L + L
Sbjct: 185 YLKMILSPEWLKAIEILKDFFQLPLKVPSTNLPPLAPIRTSACEAHHYPELFGLPPKLTN 244
Query: 266 FIVLISWQDKKSILSMAKKF-----------SLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ D + S P I+ + + KT +
Sbjct: 245 LCWDLEHMDLADPPACLCTHGKKAVWGALVQSKPEVIQLYKAWALFRHRAPKTPTTENPH 304
Query: 315 KLFYL 319
K +Y
Sbjct: 305 KHYYD 309
>gi|317485019|ref|ZP_07943902.1| poly A polymerase head domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316923757|gb|EFV44960.1| poly A polymerase head domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 387
Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/277 (16%), Positives = 90/277 (32%), Gaps = 40/277 (14%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88
+VGGAVRD L+ + ++ D A F + +
Sbjct: 14 VYLVGGAVRDRLLGRTPREYDFAFDAD----EATFLQRNPEARKVGK------------S 57
Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148
+ LR + + D RRD TINAL D+ G ++ + L+DLR
Sbjct: 58 VSVFLLRGQEF-------MPLEGTLEEDMRRRDLTINALAEDRDGNLLGHPHALSDLREG 110
Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKILSSERIW 206
++ ++ +R+ R R + + + + L + +ER+
Sbjct: 111 ILRPASP--TSFRDEPVRVFRLARMACELPSFTVHPEAVAQMRAVVGEGLLGRIPAERVG 168
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-----------EISLDQLSQVIEAEQV 255
E+ K L + P + + G F +++ S ++ +++
Sbjct: 169 RELMKALASPKPSRWLSVLAEGNCLSPWFRELETSMDIPAGPVAYHSGSVMAHLMDVMDA 228
Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292
D L ++ L K E+R
Sbjct: 229 --VAGDPLCVWMALCHDLGKIGTDPALLPHHYGHELR 263
>gi|307261401|ref|ZP_07543076.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306869132|gb|EFN00934.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
Length = 59
Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTS 74
+ +VGGAVRD L+NL V+D D + P++++ + P
Sbjct: 2 QIYLVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVF 49
>gi|159896797|ref|YP_001543044.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Herpetosiphon aurantiacus ATCC 23779]
gi|159889836|gb|ABX02916.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Herpetosiphon aurantiacus ATCC 23779]
Length = 517
Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/287 (10%), Positives = 76/287 (26%), Gaps = 23/287 (8%)
Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201
+ I F+ H + + L + +
Sbjct: 235 MYHHTQPNIHFLDVWEHSLETITAGEWLLAQLEHDQQPVPPAPPALADDWHPPAFFQQPA 294
Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261
+ R+ + L+ + + M + ++++ A +V +
Sbjct: 295 TLRMLPNL--TLQLQWAEQVVAQMQQPIGHTASNRALWKMAILLHDCAKPATRVDKPDGS 352
Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ-----KTLSIPEIKKL 316
I ++ ++ + ++ + + + +
Sbjct: 353 VSFHEHQTIGAD---IARAVYQRLRFSNQEIEYMCKVIAGHMRPGQLYSQPETTAKAAYR 409
Query: 317 FYLYGDKVMIAKLKIFLALHYNNL-----------THQDTCFILQVLSDIIHWKKPLFPL 365
F+ + + L LA H T +L D +K + L
Sbjct: 410 FFRDLKESAVDTLLHALADHMATRGPLLQEHHWAYQAAWTDAMLGFYWDAEAEQKRVPLL 469
Query: 366 TGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
G ++ + G+ G ++G +L ++ +E L R+L
Sbjct: 470 DGHTLMQELGLAAGPQIGLLLEAIREAQAAGEV-TDRESALALARRL 515
Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 52/273 (19%), Positives = 112/273 (41%), Gaps = 30/273 (10%)
Query: 14 DLINILSLLNKGEDK-SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK---TRYK 69
+++L L + + +VGG +RD ++ + D+D+ + + +K
Sbjct: 19 QALSVLKHL--LGSQPAWVVGGTLRDLVIGRPLHDVDLVVNQPAIGLAQSLAKQLNASLV 76
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
V+ G + ++ KY D+ LR+ D +D RDFTINA+ A
Sbjct: 77 VLDAERDIGRV-VLADGKYLDLAHLRAA--------------DLTSDLTDRDFTINAMAA 121
Query: 130 DQQG-----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
++ID GLND+ T++ + + D LR+LR R A G + +D
Sbjct: 122 PLYEQAQLGQIIDPHAGLNDIATGTLRMVQANA--LANDPLRMLRAVRIAAQLGWQ-LDP 178
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
A I + + ++ ER+ E+ +L + + + ++ + + +++ +
Sbjct: 179 ATDQAIIAHAELINQVAVERVRVELLAILATRWSASWLRYLDRVNLLPSLIPEIRPMYHH 238
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277
+ V+E ++++ L++ +
Sbjct: 239 TQPNI-HFLDVWEHSLETITAGEWLLAQLEHDQ 270
>gi|290994753|ref|XP_002679996.1| tRNA nucleotidyltransferase/poly(A) polymerase [Naegleria gruberi]
gi|284093615|gb|EFC47252.1| tRNA nucleotidyltransferase/poly(A) polymerase [Naegleria gruberi]
Length = 616
Score = 65.6 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 66/329 (20%), Positives = 125/329 (37%), Gaps = 22/329 (6%)
Query: 24 KGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVM------RIFSKTRYKVI----- 71
K + GG VR+ L+ L D+DIA ++ K I
Sbjct: 120 KLGTTLRVAGGWVRNKLLGLDGDDVDIAIDNMMGADFANYVSQYEKLKGLPSKAIGIISA 179
Query: 72 -PTSISY-GTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
P + T + D LR + + R + D+ RRD TINAL+
Sbjct: 180 NPEQSKHLETATTHIFGQSIDFVNLRSEEYAEESRIPSNIKLGTPLQDANRRDLTINALF 239
Query: 129 ADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDS 184
+ ++I+ G++D+++R ++ L+D LR+LR RF + +
Sbjct: 240 YNLNEQIIEDFTGKGMHDMKHRIVRTPLPPVQTFLDDPLRVLRSIRFACFFDFLIADEIM 299
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244
D + +S ER+ +E+ K+L+ +P+ A + I +F
Sbjct: 300 DAAHNHDVDVALAEKVSRERVGTELLKILKGHDPVGAFALIGEMKIRHIVF--TYSTGDK 357
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-FNCNF 303
+ + E + I+ + S + ++ +AKK++L + R L+ F
Sbjct: 358 KKKDLFPREYINPIPIEWKDQLQWENSLYRMRVMIKLAKKYNLSLDERVELLLAGFLSPI 417
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332
+S +I+++ Y + LK+
Sbjct: 418 TSHDMSREQIEEICYNLIVSSLRLPLKLA 446
>gi|157736651|ref|YP_001489334.1| tRNA nucleotidyltransferase/poly(A) polymerase [Arcobacter butzleri
RM4018]
gi|157698505|gb|ABV66665.1| tRNA nucleotidyltransferase/poly(A) polymerase [Arcobacter butzleri
RM4018]
Length = 324
Score = 65.6 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/337 (16%), Positives = 109/337 (32%), Gaps = 25/337 (7%)
Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVI 136
+ + FD + R + + + + +K ++RRDFTINA+ D I
Sbjct: 2 TLKIDEYDFDFSLPRIEKKVGSSHTDFEVSTNANLSFKEAAIRRDFTINAIGYDYFKNEI 61
Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
+ I +ED LR+ R +F + + K ++ ++ G
Sbjct: 62 LDPFDGMNDLKNKIIK-HIDDKTFVEDSLRVYRSVQFASRFEFKIDENTKILCKKIVSSG 120
Query: 197 LKI--LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
L++K P + + I E +L+++ + +
Sbjct: 121 ELKFLPKERVFEELKKLFLKSKKPSIGLSLLKEFNIMNI------EQNLEEIDNLAFILK 174
Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
+ L + + FS + + N +T +IK
Sbjct: 175 DKNYDDFRKLYLFFSCLCKGMNENET----FSFIKNLTDDKKFIKNILILNETNLTNDIK 230
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-LFPLTGDDVVKY 373
L L + + + AL + + ++L + P + G D++K
Sbjct: 231 ILKRLSLKLKLEDLIVLNQALGNT-----ISLEVFEILKSLDILNTPIKSLILGKDLIKL 285
Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
G P +K IL I LS+ ++ +R+
Sbjct: 286 GFVPSEKFKEILDFAFDLQIEDD--LSKSNIIEKIRQ 320
>gi|302764534|ref|XP_002965688.1| hypothetical protein SELMODRAFT_407286 [Selaginella moellendorffii]
gi|300166502|gb|EFJ33108.1| hypothetical protein SELMODRAFT_407286 [Selaginella moellendorffii]
Length = 427
Score = 65.6 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 84/447 (18%), Positives = 149/447 (33%), Gaps = 58/447 (12%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVR--DS---LMNLSVQDIDIATT-I 54
M +IV + IL L +V +R D L+ + D+DIA +
Sbjct: 1 MTTIV----LTREEA-KILDAL-------RLV---IRECDLKIELLGVESHDLDIALDDM 45
Query: 55 LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK 114
+ K P SY IK + TT L G T
Sbjct: 46 TGQQFCDRVLPCLRKTDPL-CSYKVIKSNPERSKHLETT---KLEILGGELDKFGTPSE- 100
Query: 115 ADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFR 172
D+ RD TIN+L+ + ++ G DL+ I+ L+D LR+LR R
Sbjct: 101 -DAYGRDLTINSLFYNVAADKVEDFTGRGVMDLKLGKIRTPLPPLVTFLDDPLRVLRSIR 159
Query: 173 FFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230
F A + + + VAS+ + K ++ ERI EI +L KNP A+ ++ G
Sbjct: 160 FAARFNFELDEELECVASVDSVKAAFETKITRERISQEIQAMLFGKNPARAMCLLHKLGY 219
Query: 231 FKEIFL---------------------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVL 269
+ IF ++ E +L V F+ + D++L +
Sbjct: 220 WPLIFTRPVSAQSVKDFQVVCETLESVNIPEEGERRLVLVAGILYPFKKENDTVLGSMAE 279
Query: 270 ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL----FYLYGDKVM 325
A ++ C +
Sbjct: 280 RIGLKAMLKKVKALYKAIGNTFVQDWYELNKCTLFGGLPCLFNESFRVEAGLAFRDRDFS 339
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNI 384
++ +FL++ ++ +D + + LTG+D+ ++ I G +VG +
Sbjct: 340 LSAAALFLSVPAPSVQQKDVFNAILKSISLSGLLNLKPLLTGNDLKLEFHIVSGPRVGEL 399
Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRKL 411
+ + ++ + LR+L
Sbjct: 400 KEAMFIWQLRNP-SGTKPECIRYLREL 425
>gi|227553359|ref|ZP_03983408.1| possible poly A polymerase [Enterococcus faecalis HH22]
gi|227177510|gb|EEI58482.1| possible poly A polymerase [Enterococcus faecalis HH22]
Length = 164
Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 50/144 (34%), Gaps = 7/144 (4%)
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
+ + I S K + L ++ + + LS + Y G++ +
Sbjct: 19 IQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRG--LRFRLSNDWQPMMLYELGEESAVL 76
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILV 386
++ +++ + ++ +TG D++ PGK +G ++
Sbjct: 77 VERLLYYYQ----QESQVQVTKELVKALPIHQRHELAITGKDLLAVLEETPGKWLGELIA 132
Query: 387 HCKQEWINSSFQLSQEDLHHLLRK 410
+Q + S + QE L +K
Sbjct: 133 EIEQHVVEGSLENKQEVLLSFAKK 156
>gi|310825256|ref|YP_003957614.1| polynucleotide adenylyltransferase [Stigmatella aurantiaca DW4/3-1]
gi|309398328|gb|ADO75787.1| Polynucleotide adenylyltransferase [Stigmatella aurantiaca DW4/3-1]
Length = 256
Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 13/222 (5%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73
+ +++ LL + +VGGA RD L V+D+D++ I + + P
Sbjct: 15 IQDVIELLQGRGMRVFVVGGACRDWLTGEPVKDVDLSLDRPVKEAHAILRQAFPGMDPVL 74
Query: 74 --SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW------KADSLRRDFTIN 125
+ +GT + L ++T + + D+L RDF++N
Sbjct: 75 RRNERFGT--LSWGDAALGGVDLNILRSHHDIQNDDMWTTSFVAREDLREDALTRDFSMN 132
Query: 126 ALYADQQGK--VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183
A Y + + D +G + + + + Y R +F +
Sbjct: 133 AFYYPCHEEGRLWDPLGCGVEDLRGRVLRLITHPRVLSTSYRTTFRIIQFLCRGYVPAPN 192
Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
+ + W + + +
Sbjct: 193 IHEHLERFADHDIQGMGDRLLNWLPNHLGKDPALWREFRQRL 234
>gi|145355788|ref|XP_001422131.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582371|gb|ABP00448.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 613
Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 10/73 (13%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 26 EDKSCIVGGAVRDSL-MNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82
+ +VGGAVRD + + +D+D+ T+ + + + + +
Sbjct: 117 GADAYVVGGAVRDWIALGERAKPRDVDLVTSATYEEIEAAMD---GRAKVVGRRFRVALV 173
Query: 83 ICR-KKYFDITTL 94
++ ++ +
Sbjct: 174 RANAGRWIEVASF 186
Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 2/157 (1%)
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160
G ++ RRDFT+NA+Y + +++D+ GG+ND ++ +GD + +
Sbjct: 257 GSRDDFARLLAVHDNARRRDFTVNAMYYDPWRNEILDFHGGMNDTHAGVVRTVGDTNVSL 316
Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220
ED +R+LR R A +G A I L++
Sbjct: 317 REDPVRMLRAIRLAARHGFTMTKELRAALRAYAATLASASPRRVASE-IETLMQNGYSEA 375
Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257
+ +++ + K F E +L E
Sbjct: 376 SFKLLWHSTLMKYAFPVQHEFFKPRLPNKSSLTYDLE 412
>gi|213645912|ref|ZP_03375965.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase
[Salmonella enterica subsp. enterica serovar Typhi str.
J185]
Length = 41
Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRI 62
K +VGGAVRD+L+ L V+D D P ++
Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDA 37
>gi|189206463|ref|XP_001939566.1| tRNA nucleotidyltransferase [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975659|gb|EDU42285.1| tRNA nucleotidyltransferase [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 897
Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 56/379 (14%), Positives = 123/379 (32%), Gaps = 48/379 (12%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPD----RVMRIF--- 63
D+ + + L + GG VRD L+ + DID+A + + ++
Sbjct: 39 DATAVQVPEHLANEKITLRWTGGWVRDKLLKVGSNDIDVAINKMTGEHFGLKMQEYLEIP 98
Query: 64 ----------------SKTRYKVIPTS-----------ISYGTIKIICRKKYFDITTLRS 96
++ + K I + T D+ LR
Sbjct: 99 GNAEKHGLIEPNDDLDARDKTKKIAPGLHKIEANPEKSKNLETATTKIMGIDLDLVNLRK 158
Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIG 154
+ + + + D++RRD T+NA++ + ++ G +D+ + I+
Sbjct: 159 ETYNEVSRNPQMEFGTAEEDAMRRDATVNAMFYNLHTCQVEDFTGRGHDDMAAKIIRTPL 218
Query: 155 DAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKL 212
+ + +D LR+LR RF + + +S ER+ E+ K+
Sbjct: 219 EPYQTFKDDPLRVLRLIRFASRLDYTIEPETAKAMGNADIQDVLKIKISRERVGIELEKM 278
Query: 213 LEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW 272
L+ P A+ + G+++ +F D E E + + +V S
Sbjct: 279 LKGPRPRMALELIDRFGLYRTVFTDPTR------ELPTEPETAYFTPAYDFVESVVKKSG 332
Query: 273 QDKKSILSMAKKFSLPREIRYFLISFFNCNFN---QKTLSIPEIKKLFYLYGDKVMIAKL 329
+ +I + + + + + + + + YL + A
Sbjct: 333 EVPTAIPDILMRNEDEKYLAWVCATMMPWADAPTVPHQKPLQRPYFVAYLVAREGFKAPN 392
Query: 330 KIFLALHYNNLTHQDTCFI 348
KI + ++ +
Sbjct: 393 KICDIVATCLSNSEEIRNL 411
Score = 42.9 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 354 DIIHWKKPLFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
I+ L G D+ G PG + + L + + ++
Sbjct: 485 KILEADTFRPLLKGTDLAKALGTKPGPWMKDALDVVMAWQLRNPDITDPAAAIEAVK 541
>gi|195343783|ref|XP_002038470.1| GM10596 [Drosophila sechellia]
gi|194133491|gb|EDW55007.1| GM10596 [Drosophila sechellia]
Length = 188
Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 72/188 (38%), Gaps = 13/188 (6%)
Query: 226 YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ E +E +LD + +A FE +L ++ + + K
Sbjct: 1 MHRCNLFEYIGLPKEPNLDDFDRFCKALDKFEKPHQPILYLAGMLHSVEDAMEMHKRLKL 60
Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345
S ++ F +K S + + I + + L Y+
Sbjct: 61 SAYERD----LARFITQEREKVGSHYTTLRDLQKLCLQKYIQRDFVEQLLKYSGK----- 111
Query: 346 CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
L++ + + W KP FP+ G+ + ++G+ G ++G ++ K W +S FQL+ +DL
Sbjct: 112 ---LELYNQLKSWVKPDFPIRGNALAQHGL-NGVRLGLVMDELKLLWADSDFQLTHDDLL 167
Query: 406 HLLRKLIA 413
+ ++
Sbjct: 168 KKIPNVLE 175
>gi|213646113|ref|ZP_03376166.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Salmonella
enterica subsp. enterica serovar Typhi str. J185]
Length = 383
Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 64/383 (16%), Positives = 127/383 (33%), Gaps = 39/383 (10%)
Query: 56 PDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV----FTR 111
P ++ + + P + + + + R++ + Y
Sbjct: 1 PQEMLDAGYQQVGRDFPVF--------LHPQTHEEYALARTERKSGSGYTGFTCYAAPDV 52
Query: 112 DWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171
+AD RRD TINAL D G++ID G DL R ++ + ED LR+LR
Sbjct: 53 TLEADLQRRDLTINALARDDDGQIIDPYHGRRDLEARLLRHV---SPAFGEDPLRVLRVA 109
Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLK----ILSSERIWSEINKLLEAKNPLNAIVHMYN 227
RF A Y + ++ + L+ ER+W E L +NP + +
Sbjct: 110 RFAARYAHLSFRIADETLTLMREMTAAGELEHLTPERVWKETENALTTRNPQVYFQVLRD 169
Query: 228 GGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287
G + +F ++ + E L ++S Q ++
Sbjct: 170 CGALRVLFPEIDALFGVPAPAKWHPEIDTGVHTLMTLSMAAMLSPQLDVRFATLCHDVGK 229
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ + + + ++ + + D +AKL +
Sbjct: 230 GLTPKNLW-PRHHGHGPVGVKLVEQLCQRLRVPNDLRDLAKLVAAYHDLIHTFPILQPKT 288
Query: 348 ILQVLSDIIHWKKPL----------FPLTGDD-VVKYGIPPGKKVGNILVHCK----QEW 392
I+++ I W+KP + G P G+ + + +E
Sbjct: 289 IVKLFDAIDAWRKPQRVEQIALTSEADVRGRTGFEASDYPQGRWLREAWQVAQAVPTKEV 348
Query: 393 INSSFQ-LS-QEDLHHLLRKLIA 413
+ + F+ + +E+L R++ A
Sbjct: 349 VEAGFKGIEIREELTK--RRIAA 369
>gi|317485888|ref|ZP_07944748.1| HD domain-containing protein [Bilophila wadsworthia 3_1_6]
gi|316922862|gb|EFV44088.1| HD domain-containing protein [Bilophila wadsworthia 3_1_6]
Length = 444
Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/408 (10%), Positives = 112/408 (27%), Gaps = 47/408 (11%)
Query: 47 DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK 106
D+DIA + + +IF + ++ + +D+
Sbjct: 46 DVDIACACDTETLFKIFPNA-VPYTEEG-----AMAMLQENGVTLRFYSTDVEDASHPEM 99
Query: 107 VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166
+ L + + + + + ++K +G + ++YL
Sbjct: 100 SQLRITPRLARLLAELQLKGQLKSSNTNDPEAKEFEDFDKAGSVKLVGLPSKTLAKNYLL 159
Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226
+R R+ A++ + A + L + + I E K+ + ++
Sbjct: 160 AIRALRYAANFDLPVNPHTWVSIIQSANRILDYVPAREIMEEWRKVAAESMW-KFVQLLF 218
Query: 227 NGGIFKEIFLDVQEISLDQLSQVI--EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284
+ + ++ +S + + + E VF+ I+ + R+ D L+
Sbjct: 219 EAQLLHGLMPEIAALSCIKQERNDDGDIESVFDHTIECMKRYPEEGFSMDWYGTLATMFH 278
Query: 285 ----------------------------------FSLPREIRYFLISFFNCNFNQKTLSI 310
E + + +
Sbjct: 279 DVGKLYTAEHLNGRWTFYQHHRVGAGVTRKILRRLHFTSEDIDLICHLVRHHMMFHFMLT 338
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK-KPLFPLTGDD 369
+ F + + + ++ + L+ + L G++
Sbjct: 339 DRGIRRFKAL-PETERLIAMCRADIEARDGSYTYFNHNSKYLTRAETDELLLEPLLNGNE 397
Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+++Y +PPG VG I + + + ++ A +
Sbjct: 398 IMEYTSLPPGPAVGTIREALLKAQVAGEVTDRDSAI-AFVKNYAAKLK 444
>gi|295399|gb|AAA27495.1| ORFC [Thermus thermophilus]
Length = 236
Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 42/133 (31%), Gaps = 2/133 (1%)
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ P+E+ + ++ +++ F D + +
Sbjct: 86 ARASLFWLRFPKEVVERAAGLVRRHMDRLPEERKALRRFFLRRQDLLPDLVYLMAADRLA 145
Query: 338 NNLTHQDTCFILQVLSDIIHWKKPL-FPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINS 395
++ +L +++ P L+G++V+ G+ G +VG L +
Sbjct: 146 TRGVEREAWEVLGRYEEVLKDPLPQRPLLSGEEVMALLGLQEGPEVGRALKALLEAQAEG 205
Query: 396 SFQLSQEDLHHLL 408
+E LL
Sbjct: 206 RVGTKEEARAFLL 218
>gi|145641757|ref|ZP_01797333.1| tRNA nucleotidyltransferase [Haemophilus influenzae R3021]
gi|145273571|gb|EDK13441.1| tRNA nucleotidyltransferase [Haemophilus influenzae 22.4-21]
Length = 65
Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTIL-PDRVMRIFSKTRYKVIPTSI 75
K +VGGAVRD L+ L V+D D P ++ + + K P +
Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGTDPATLLSLGYQQVGKDFPVFL 50
>gi|209880381|ref|XP_002141630.1| poly(A) polymerase family protein [Cryptosporidium muris RN66]
gi|209557236|gb|EEA07281.1| poly(A) polymerase family protein [Cryptosporidium muris RN66]
Length = 674
Score = 63.7 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/221 (23%), Positives = 82/221 (37%), Gaps = 56/221 (25%)
Query: 16 INILSLLNKGEDKS------CIVGGAVRDSLMNLS------------------------- 44
++ +LLN+ + + GG VRD L+N
Sbjct: 69 QDLFNLLNEFVYSTSINTIMRVAGGWVRDKLLNKLDILNNLQHDNGNIQSKENAIIEHSI 128
Query: 45 --------VQDIDIAT-TILPDRVMRIF-----SKTRYKVIPTSI--------SY-GTIK 81
+DIDIA + F K Y I I + T
Sbjct: 129 PKFVPVSLSKDIDIAIDNMSGKSFAEKFDTWLQQKYSYPRISIGIIAKDPDKSKHLETAT 188
Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV-- 139
+ + DI LR++ T ++ + D+LRRDFTIN+++ + ++
Sbjct: 189 LKYGEFSLDIVNLRTETYTKDSRIPIIKCGLPEEDALRRDFTINSMFYNINNGKLEDFTK 248
Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
GL DL N+ I+ + +L+D LR+LR FRF A +
Sbjct: 249 KGLEDLYNQVIRTPLNPIQTLLDDPLRVLRAFRFAARLHFR 289
>gi|251772287|gb|EES52857.1| putative polyA polymerase family protein [Leptospirillum
ferrodiazotrophum]
Length = 452
Score = 63.3 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 65/439 (14%), Positives = 132/439 (30%), Gaps = 51/439 (11%)
Query: 16 INILSLLNK-GEDKSCIVGGAVRDSLM----NLSV----QDIDIATT--ILP--DRVMRI 62
IL + + VGG RD ++ + ++ID+ P + V R
Sbjct: 16 QKILERIPPPEGGRFYAVGGWSRDRILASLEGRAPSEEEKEIDLVADRGFFPWVETVFRA 75
Query: 63 FSKTRYKVIPTSISYGTIKIICRKK----YFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
S + T ++ + D+ RS+ + DS
Sbjct: 76 LSGLIVGTPHVERDFLTARVDVLDEGEILRIDLAGFRSESYPRPGVLPRTRPGSFPEDSR 135
Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAH----HRILEDYLRILRFFRFF 174
RRDF +NALY + + L+ + ED RI R+ R
Sbjct: 136 RRDFPMNALYLEWDPTRKGFRRLLDPFGGERDLALRMVSLIRPEAFSEDPTRIFRWARLA 195
Query: 175 AHYGEKNIDS--DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232
+ + L ++K + R+ E+ +L K+PL AI +++ F
Sbjct: 196 SRLRLTSSYELLLALRTAVKDPSLWHEVGGARVSGEMERLQREKDPLAAISLLFSSNAFA 255
Query: 233 EIFLD-VQEISLDQLSQVIEAEQVFE-----WKIDSLL----RFIVLISWQDKKSILSMA 282
+ + +S + ++ + + K D L R + ++
Sbjct: 256 SLTGGALARLSFQRKRRLGRWFSLRDSLEVGAKKDPYLVGASREMFYLALLAGLRRRIFE 315
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF---------YLYGDKVMIAKLKIFL 333
+ F F + + +L+G + + K+
Sbjct: 316 QVALAWGIGARFREGLAETLFRPSSWPGGQSYAGLLKESGGDGGHLWGLADRMDRGKLLD 375
Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP-GKKVGN-ILVHCKQE 391
+L I + ++ ++G + G P + IL +
Sbjct: 376 SLLRCG-----EEEIPLWKDYLFDGRRLPPLVSGKVL--LGYPAISPEERRPILAEIRFR 428
Query: 392 WINSSFQLSQEDLHHLLRK 410
+ ++ LH L ++
Sbjct: 429 QRTGELKTPEDALHWLEKR 447
>gi|302497111|ref|XP_003010556.1| hypothetical protein ARB_03257 [Arthroderma benhamiae CBS 112371]
gi|291174099|gb|EFE29916.1| hypothetical protein ARB_03257 [Arthroderma benhamiae CBS 112371]
Length = 605
Score = 63.3 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 63/330 (19%), Positives = 110/330 (33%), Gaps = 33/330 (10%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK---------------- 65
GG VRD ++ + QDID+ + + +
Sbjct: 113 KGSGLVLRFTGGWVRDKVLGVDSQDIDVGISTMTGYEFGLALKEYLDIPENLERYKAHYP 172
Query: 66 -----------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW 113
+ P + T I D+ LR + TD V
Sbjct: 173 EHALKGVIGGLHKIAANPEKSKHLETTTIRVFGFDVDLVNLRKETYTDTSRNPQVEFGTA 232
Query: 114 KADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFF 171
+ D+LRRD T+NAL+ + ++ G+ +D+ + I+ + +D LR+LR
Sbjct: 233 EEDALRRDATVNALFYNLHTGEVEDFTGMGLSDMEAKLIRTPLAPYQTFKDDPLRVLRLI 292
Query: 172 RFFAHYGEKNIDSDGLVASIKA--KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229
RF + G + +S ERI EI K+L +PL A++ + G
Sbjct: 293 RFASRLGYTIDPNTEESMCDDDIKHSLRLKISQERIGIEIEKMLRGPDPLGALMIINRLG 352
Query: 230 IFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289
++ IF D S A + +D V + + + K R
Sbjct: 353 LYDTIFSDHLSAIDVDTSSWPTAYTLLNSILDETDYPNVSLELRKSVKNFLIRDKDEKYR 412
Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+S + + L+ E +K+
Sbjct: 413 SWMIAALSPWAMVDFKHPLTEEEARKMAPR 442
Score = 42.1 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 7/96 (7%)
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW-----KKPLFPLTGDD-VVKYGI 375
D + I L + L+VL + + G D +
Sbjct: 505 DWRLCFIQAILLDVMQGKAAQTVLNDYLEVLKFLEQENLLEVTNLKPLVNGRDMIKALNS 564
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
G + L + I + + E + +R+
Sbjct: 565 KAGAWLTTALEIAMEWQIRNPDRTDAEGAIEEAIRR 600
>gi|262340792|gb|ACY54514.1| polyA polymerase family protein [Clostridium botulinum D str. 1873]
Length = 196
Score = 63.3 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 12/156 (7%)
Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
+ + + K+ + + N+K S I+KL L G+
Sbjct: 43 IDYFHNHEELSSYKAKKILKRMKYDNNTINKVSILIKYH-NRKIDSNKSIRKLLSLIGED 101
Query: 324 VMIAKLKIFLALHYN----------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373
LK+ A N + + ++LS + + G D+++
Sbjct: 102 NFRDLLKVKEADIKAQNLKYYHERHNKLIEIEARLNEILSKNQCFLLKDLKVNGRDLLEL 161
Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
G GK +G+IL + ++ + + + L +++
Sbjct: 162 GY-SGKDIGDILNNLLEKVLENPDLNDKNKLISIIK 196
>gi|120602371|ref|YP_966771.1| polynucleotide adenylyltransferase region [Desulfovibrio vulgaris
DP4]
gi|120562600|gb|ABM28344.1| Polynucleotide adenylyltransferase region [Desulfovibrio vulgaris
DP4]
Length = 383
Score = 63.3 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 52/216 (24%), Positives = 83/216 (38%), Gaps = 26/216 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K+ +VGGAVRD L+ + ++ DIA + F +
Sbjct: 2 KTYLVGGAVRDILIGRTPREHDIAFEAS----VAHFLQANPSARKVGKR----------I 47
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
+ G D +AD L+RDFTINAL + G + + L DLR
Sbjct: 48 DVYLIGNVEHRPVQGG--------DIRADLLQRDFTINALALEADGTLHAHPDALADLRA 99
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKILSSERI 205
I+ ++ D +R+LR RF A E ++ + L A L + E++
Sbjct: 100 SIIRPASPEA--LMTDPVRVLRAARFAAQLPEMSLAQETLEAMRAVAAAGYLADIPCEQV 157
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241
E K L + P + GG + F +V ++
Sbjct: 158 CRETLKALGSPAPERFFRSLAKGGCLQPWFAEVADL 193
>gi|121591740|ref|ZP_01678954.1| multifunctional CCA protein [Vibrio cholerae 2740-80]
gi|121546398|gb|EAX56645.1| multifunctional CCA protein [Vibrio cholerae 2740-80]
Length = 98
Score = 63.3 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 12/98 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
+ +VGGAVRD L+ L V D D P ++ + K P +
Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVF--------LHPN 53
Query: 87 KYFDITTLR---SDLITDGRYAKVVFTRDWKADSLRRD 121
D+ + G + R D
Sbjct: 54 SKEDMPLPVPNANQRSYTGFACTTHPMSPREICCARSD 91
>gi|167947083|ref|ZP_02534157.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Endoriftia
persephone 'Hot96_1+Hot96_2']
Length = 130
Score = 63.3 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
++ +VGGAVRD L+ L V + D + P+++++ ++ +
Sbjct: 2 QTYLVGGAVRDRLLGLPVTERDYLVVGATPEQLLQ----QGFRQ--VGRDFPIFIHPQDG 55
Query: 87 KYFDITTLRSDLITDGRYA 105
+ T R D A
Sbjct: 56 SEYAPGTHRQRFSPDSGRA 74
>gi|46580245|ref|YP_011053.1| tRNA nucleotidyltransferase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449662|gb|AAS96312.1| tRNA nucleotidyltransferase, putative [Desulfovibrio vulgaris str.
Hildenborough]
gi|311233770|gb|ADP86624.1| Polynucleotide adenylyltransferase region [Desulfovibrio vulgaris
RCH1]
Length = 383
Score = 63.3 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 66/390 (16%), Positives = 119/390 (30%), Gaps = 64/390 (16%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K+ +VGGAVRD L+ + ++ DIA + F +
Sbjct: 2 KTYLVGGAVRDILIGRTPREHDIAFEAS----VAHFLQANPSARKVGKR----------I 47
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
+ G D +AD L+RDFTINAL + G + + L DLR
Sbjct: 48 DVYLIGNVEHRPVQGG--------DIRADLLQRDFTINALALEADGTLHAHPDALADLRA 99
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKILSSERI 205
I+ ++ D +R+LR RF A E ++ + L A L + E++
Sbjct: 100 SIIRPASPGA--LMADPVRVLRAARFAAQLPEMSLAQETLEAMRAVAAAGYLAEMPCEQV 157
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE------------------------- 240
E K L + P + + GG + F +V +
Sbjct: 158 CRETLKALGSPAPERFFISLAKGGCLQPWFAEVADLTGVPAGPPAYHTGSAFDHTIDIMR 217
Query: 241 -ISLDQLSQVIEAEQVFEW--KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297
++ D + +L + + +++ ++ ++ +
Sbjct: 218 RLAGDAFDVWLGLCHDLGKGTTPADILPRHLGHEHRGEEAATALGQRLGMSNRFIRGGAL 277
Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
+ L ++ L + T + L I+
Sbjct: 278 AARMHMKAGRYDTLRPHTRVDLLLVLHHAGIIRNVWNLVTADSGIDHTATAMAELETILA 337
Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
K P L G G + G +L
Sbjct: 338 VKLP-PSLRGK---------GPESGRMLRE 357
>gi|309789886|ref|ZP_07684464.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Oscillochloris trichoides DG6]
gi|308228093|gb|EFO81743.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Oscillochloris trichoides DG6]
Length = 519
Score = 62.9 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/192 (15%), Positives = 67/192 (34%), Gaps = 18/192 (9%)
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+ L L Q + D + F + + + K+ + R+ ++
Sbjct: 326 LKLATLIHDNAKPQTKQIHPDGKVSFYGH-QELGAEVAMQITKRLRMSRQDSAYISLIVR 384
Query: 301 CNFNQ---------KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ ++ + G V++ +L +A NL +
Sbjct: 385 EHMRPGQLRASEVLTPRAVVRFFRDTGDAGPDVLLHELADHMATRGPNLQPEQWAIHRAW 444
Query: 352 LSDII--HWKKP----LFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
+ +++ HW +P L G+D++ + I PG +VG +L + + S +
Sbjct: 445 IRELLDVHWGRPIEQRQPLLGGNDLMRELQIAPGPQVGRLLRTIGEAQASGEI-GSYAEA 503
Query: 405 HHLLRKLIASSQ 416
L R+++ S+
Sbjct: 504 LELARRMLQESE 515
Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 9/114 (7%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPTSIS 76
+ + + ++GG RD L + D+D+A + R + +P
Sbjct: 13 LADFFAQHHVPAWLIGGTSRDLLRGVEPTDLDLAVDGDGLELARTLADQLDGSFVPLDGE 72
Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ T + + R++ + D RDFTINAL
Sbjct: 73 HCTGRTVLP--------ARANRPALYLDIARLRAPSIDGDLRLRDFTINALALP 118
>gi|302663486|ref|XP_003023385.1| hypothetical protein TRV_02487 [Trichophyton verrucosum HKI 0517]
gi|291187379|gb|EFE42767.1| hypothetical protein TRV_02487 [Trichophyton verrucosum HKI 0517]
Length = 533
Score = 62.9 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 63/324 (19%), Positives = 112/324 (34%), Gaps = 33/324 (10%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK---------------------- 65
GG VRD ++ + QDID+ + + +
Sbjct: 47 LRFTGGWVRDKVLGVDSQDIDVGISTMTGYEFGLALKEYLDIPENLERYKAHYPEHALKG 106
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ P + T I D+ LR + TD V + D+LR
Sbjct: 107 VIGGLHKIAANPEKSKHLETTTIRVFGFDVDLVNLRKETYTDTSRNPQVEFGTAEEDALR 166
Query: 120 RDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD T+NAL+ + ++ G+ +D+ + I+ + +D LR+LR RF +
Sbjct: 167 RDATVNALFYNLHTGEVEDFTGMGLSDMEAKLIRTPLAPYQTFKDDPLRVLRLIRFASRL 226
Query: 178 GEKNIDSDGLVASIKA--KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
G + +S ERI EI K+L +PL A++ + G++ IF
Sbjct: 227 GYTIDPNTEESMCDDDIKHSLRLKISQERIGIEIEKMLRGPDPLGALMIINRLGLYDTIF 286
Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295
D + S A + +D V + + + K R
Sbjct: 287 SDHLSATDVDTSSWPVAYTLLNSILDETDYPEVSLELRKSVKSFLIRDKDEKYRSWMIVA 346
Query: 296 ISFFNCNFNQKTLSIPEIKKLFYL 319
+S + ++ L+ E +K+
Sbjct: 347 LSPWAMVDVKQPLTEEEARKMAPR 370
Score = 42.5 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 7/96 (7%)
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW-----KKPLFPLTGDD-VVKYGI 375
D + I L + L+VL + + G D +
Sbjct: 433 DWRLCFIQAILLDVMQGKAAQAVLNDYLEVLKFLEQENLLEVTNLKPLVNGRDMIKALNS 492
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
G + L + I + + E + +R+
Sbjct: 493 KAGAWLTTALEIAMEWQIRNPDRTDAEGAIEEAIRR 528
>gi|225851035|ref|YP_002731269.1| poly A polymerase [Persephonella marina EX-H1]
gi|225645264|gb|ACO03450.1| poly A polymerase [Persephonella marina EX-H1]
Length = 323
Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 56/263 (21%), Positives = 102/263 (38%), Gaps = 26/263 (9%)
Query: 31 IVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSKTRYK--VIPTSISYGTIKIIC- 84
IVGG +RD L+N + DID T P +++ F K K + II
Sbjct: 59 IVGGWIRDRLLNRPLSKKIDIDFLVTTDPFEIVKRFKKILGKGDIFRFEKEKDVATIIFY 118
Query: 85 ---RKKYFDITTL-----RSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV- 135
+ FD + + D + + + D + RDFTINA+ +
Sbjct: 119 EGDHRYRFDFSYFDISDIMENPDLDFYDKEREIIKRIEQDLMTRDFTINAMAVVFDDTIG 178
Query: 136 --------IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
D GGL DL+ ++ + + I +D +RILR +R IDSD
Sbjct: 179 LGASQTVLFDPSGGLEDLQAGIVRPVSYEN--IEKDPVRILRGYRIAQEIDF-EIDSDFE 235
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247
K +K SER+ EI K+ + + + + + G+ ++I +++ + + +
Sbjct: 236 RWVKKNASLVKNAPSERLRDEILKIFDKERSADTVDRLIKAGLLQQIIPEIESMIKIRKT 295
Query: 248 QVIEAEQVFEWKIDSLLRFIVLI 270
+ + ++ +
Sbjct: 296 GDFHKYDLLNHSLKTVEYMEQFL 318
>gi|322420279|ref|YP_004199502.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Geobacter sp. M18]
gi|320126666|gb|ADW14226.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Geobacter sp. M18]
Length = 401
Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 59/345 (17%), Positives = 107/345 (31%), Gaps = 39/345 (11%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF------SKTRYKVIPTSISYGTIKI 82
+VGG VRD L+ + QD+D+A + + + T +G +++
Sbjct: 20 IFLVGGMVRDILLGVRCQDVDLAAAVPVSELTSLGFRLVESKSTPNIYFRFHKEFGKLEV 79
Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142
+ D RRDFTINA+ +G + D + G
Sbjct: 80 TW----------------------LPSLEVLPDDLSRRDFTINAMAMSLEGGLNDSLNGR 117
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202
DL R ++ + +D LRILR FRF + ++ ++ S L+ +
Sbjct: 118 GDLDRRVLRCCSP--TSLNDDPLRILRAFRFECEGWRLDAQAEAILRSRDWTDDLQRIPV 175
Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262
ER E+ K + +P M I ++ + + +
Sbjct: 176 ERFSQEMLKAIAKDDPSRFFRRMLEFRIGTNFLPEIFRMPEVPAGPPQHHPEGDLFTHSL 235
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322
+ + + + + + ++P K L
Sbjct: 236 QVLERMAKLTPEPTARFCALFHDLGKLLTPAEQHPKHHGHDALGAEAVPAFCKRLRL--- 292
Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
+ + AL N H + + L D K L L G
Sbjct: 293 -----PVALQRALQATNRLHNNANRWAE-LRDATRIKLALNALKG 331
>gi|329571704|gb|EGG53385.1| hypothetical protein HMPREF9520_02688 [Enterococcus faecalis
TX1467]
Length = 101
Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-Y 373
+ Y G++ + ++ +++ + ++ +TG D++
Sbjct: 1 MMLYELGEESAVLVERLLYYYQ----QESQVQVTKELVKALPIHQRHELAITGKDLLAVL 56
Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
PGK +G ++ +Q + S + QE L +K
Sbjct: 57 EETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 93
>gi|170055267|ref|XP_001863507.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167875251|gb|EDS38634.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 182
Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 78/190 (41%), Gaps = 14/190 (7%)
Query: 232 KEIFLDVQEISLDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
+ ++ ++++ +V + E V I + L+ + L++ KF++
Sbjct: 1 MAVHGLPEKPNVEEFVRVFKNIESVQGGDIQPITPLSALLHTPEDAITLNLRLKFTVFER 60
Query: 291 IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
+ ++ F +P + + G + K + LHY+ +
Sbjct: 61 ELAYFLTQNRDEFESVNELLPFQQLSLHTLGS-AKLKKEYVLELLHYHGK--------RE 111
Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH----H 406
+ + W+ P FP+ G+ ++++G P G K+G ++ K W + F +S+ DL
Sbjct: 112 LYGQLKEWQIPAFPIKGNVLIEHGAPKGPKLGLVMNELKMVWAANQFDMSEPDLLGHLPA 171
Query: 407 LLRKLIASSQ 416
+L KL + +
Sbjct: 172 VLEKLDLARK 181
>gi|327300072|ref|XP_003234729.1| tRNA nucleotidyltransferase [Trichophyton rubrum CBS 118892]
gi|326463623|gb|EGD89076.1| tRNA nucleotidyltransferase [Trichophyton rubrum CBS 118892]
Length = 559
Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 49/238 (20%), Positives = 83/238 (34%), Gaps = 33/238 (13%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK---------------- 65
GG VRD ++ + QDID+ + + +
Sbjct: 67 KGSGLVLRFTGGWVRDKVLGVDSQDIDVGISTMTGYEFGLALKEYLDIPENLERYKAHYP 126
Query: 66 -----------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW 113
+ P + T I D+ LR + TD V
Sbjct: 127 EHALKGVIGGLHKIAANPEKSKHLETTTIRVFGFDVDLVNLRKETYTDTSRNPQVEFGTA 186
Query: 114 KADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFF 171
+ D+LRRD T+NAL+ + ++ G+ +D+ + I+ + +D LR+LR
Sbjct: 187 EEDALRRDATVNALFYNLHTGEVEDFTGMGLSDMEAKLIRTPLAPYQTFKDDPLRVLRLI 246
Query: 172 RFFAHYGEKNIDSDGLVASIKA--KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227
RF + G + +S ERI EI K+L +PL A++ +
Sbjct: 247 RFASRLGYTIDPNTEESMCDDDIKHSLRLKISQERIGIEIEKMLRGPDPLGALMIINR 304
Score = 42.5 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 7/96 (7%)
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW-----KKPLFPLTGDD-VVKYGI 375
D + I L + L+VL + + G D +
Sbjct: 459 DWRLCFIQAILLDVMQGKAAQAVLNDYLEVLKFLEQENLLEVTNLKPLVNGRDMIKALNS 518
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
G + L + I + + E + +R+
Sbjct: 519 KAGAWLTTALEIAMEWQIRNPDRTDAEGAIEEAIRR 554
>gi|326473531|gb|EGD97540.1| tRNA nucleotidyltransferase [Trichophyton tonsurans CBS 112818]
Length = 605
Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 63/330 (19%), Positives = 111/330 (33%), Gaps = 33/330 (10%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK---------------- 65
+ GG VRD ++ + QDID+ + + +
Sbjct: 113 KEPGLVLRFTGGWVRDKVLGVDSQDIDVGISTMTGYDFGLALKEYLDIPENLEKYKAHYP 172
Query: 66 -----------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW 113
+ P + T I D+ LR + TD V
Sbjct: 173 EHALKGVIGGLHKIAANPEKSKHLETTTIRVFGFDVDLVNLRKETYTDTSRNPQVEFGTA 232
Query: 114 KADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFF 171
+ D+LRRD T+NAL+ + ++ G +D+ + I+ + +D LR+LR
Sbjct: 233 EEDALRRDATVNALFYNLHTGEVEDFTGTGLSDMEAKLIRTPLAPYQTFKDDPLRVLRLI 292
Query: 172 RFFAHYGEKNIDSDGLVASIKA--KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229
RF + G + +S ERI EI K+L +PL A+ + G
Sbjct: 293 RFASRLGYTIDPNTEESMCDDDIKHSLRLKISQERIGIEIEKMLRGPDPLAALTIINRLG 352
Query: 230 IFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289
++ IF D + S A + +D V + + + K R
Sbjct: 353 LYDTIFSDHLSATDVDTSSWPVAYTLLNSILDETDYPEVSLELRKAIKSFLIRDKDEKYR 412
Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+S + ++ L+ E +K+
Sbjct: 413 SWMIAALSPWAMVDVKQPLTEEEARKMAPR 442
Score = 41.0 bits (94), Expect = 0.32, Method: Composition-based stats.
Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 7/96 (7%)
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW-----KKPLFPLTGDD-VVKYGI 375
D + I L + L++L + + G D +
Sbjct: 505 DWRLCFIQAILLDVMQGKAAQAVLNDYLEILKFLEQENLLEVTNLKPLVNGRDMIKALNS 564
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
G + L + I + + E + +R+
Sbjct: 565 KAGAWLTTALEIAVEWQIRNPGRTDAEGAIEEAIRR 600
>gi|294644872|ref|ZP_06722612.1| HD domain protein [Bacteroides ovatus SD CC 2a]
gi|292639810|gb|EFF58088.1| HD domain protein [Bacteroides ovatus SD CC 2a]
Length = 302
Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/297 (12%), Positives = 96/297 (32%), Gaps = 53/297 (17%)
Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226
++R RF G ID D + + K+ ++I+S ERI E+NK++ + P + +
Sbjct: 1 MMRCIRFATQLGFY-IDDDTFESLCRNKERIEIISRERIADELNKIILSPIPSKGFIDLE 59
Query: 227 NGGIFKEIFLDVQEI-----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK 275
G+ IF + + + + + + + + LR+ L+ K
Sbjct: 60 RSGLLPLIFPEFAALQGVETRNGRSHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAK 119
Query: 276 KSILSM-----------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312
K E ++ + + ++
Sbjct: 120 PVTKRWEPKAGWTFHNHNFIGEKMIPHIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDV 179
Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI-------------IHWK 359
+ + + L ++T ++ + L++ +
Sbjct: 180 VTDSAVRRLLFEAGDDIDDLMMLCEADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVR 239
Query: 360 KPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDL----HHLLRKL 411
P++G+++++ +G+ P ++VG + K ++ E +K+
Sbjct: 240 NFQPPVSGEEIMEIFGLEPCREVGVLKSAIKDAILDGVIPNEYEAAHAFMLERAKKM 296
>gi|326480246|gb|EGE04256.1| tRNA nucleotidyltransferase [Trichophyton equinum CBS 127.97]
Length = 533
Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 63/330 (19%), Positives = 111/330 (33%), Gaps = 33/330 (10%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK---------------- 65
+ GG VRD ++ + QDID+ + + +
Sbjct: 41 KEPGLVLRFTGGWVRDKVLGVDSQDIDVGISTMTGYDFGLALKEYLDIPENLEKYKAHYP 100
Query: 66 -----------TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW 113
+ P + T I D+ LR + TD V
Sbjct: 101 EHALKGVIGGLHKIAANPEKSKHLETTTIRVFGFDVDLVNLRKETYTDTSRNPQVEFGTA 160
Query: 114 KADSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFF 171
+ D+LRRD T+NAL+ + ++ G +D+ + I+ + +D LR+LR
Sbjct: 161 EEDALRRDATVNALFYNLHTGEVEDFTGTGLSDMEAKLIRTPLAPYQTFKDDPLRVLRLI 220
Query: 172 RFFAHYGEKNIDSDGLVASIKA--KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229
RF + G + +S ERI EI K+L +PL A+ + G
Sbjct: 221 RFASRLGYTIDPNTEESMCDDDIKHSLRLKISQERIGIEIEKMLRGPDPLAALTIINRLG 280
Query: 230 IFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289
++ IF D + S A + +D V + + + K R
Sbjct: 281 LYDTIFSDHLSATDVDTSSWPVAYTLLNSILDETDYPEVSLELRKAIKSFLIRDKDEKYR 340
Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319
+S + ++ L+ E +K+
Sbjct: 341 SWMIAALSPWAMVDVKQPLTEEEARKMAPR 370
Score = 41.0 bits (94), Expect = 0.35, Method: Composition-based stats.
Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 7/96 (7%)
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW-----KKPLFPLTGDD-VVKYGI 375
D + I L + L++L + + G D +
Sbjct: 433 DWRLCFIQAILLDVMQGKAAQAVLNDYLEILKFLEQENLLEVTNLKPLVNGRDMIKALNS 492
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
G + L + I + + E + +R+
Sbjct: 493 KAGAWLTTALEIAVEWQIRNPGRTDAEGAIEEAIRR 528
>gi|319789341|ref|YP_004150974.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermovibrio ammonificans HB-1]
gi|317113843|gb|ADU96333.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Thermovibrio ammonificans HB-1]
Length = 480
Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 85/494 (17%), Positives = 149/494 (30%), Gaps = 103/494 (20%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMN--LSVQDIDIATTILPDR 58
M + F+ L + L + IVGG +RD L+ DID+ P
Sbjct: 1 MEKRIHKFTFYHPKLEKLQECL--VNGRCYIVGGFIRDRLLRVAKEKVDIDVVCF-KPQE 57
Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118
R +T K P I + I R V + D L
Sbjct: 58 CARCIEET-LKKKPFVIEREKAVFSFCGPDWRIDLTR------------VDGATVEEDLL 104
Query: 119 RRDFTINALY---------ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169
+RDFTINAL + +ID GGL DL+ ++ + + R D LR+LR
Sbjct: 105 KRDFTINALAVDLRELFLPFNDDALIIDPTGGLEDLQKGLVRPVSEGALR--ADPLRVLR 162
Query: 170 FFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229
R S +A A+ K ++ ERI E+ K L+ A+ + G
Sbjct: 163 GVRIKNELDFTYHPSFLKLAREAAEGL-KSVAPERIKEELVKCLKGGFFALALRELDEIG 221
Query: 230 IFKEIFLDVQEIS----------------------------------------LDQLSQV 249
+F ++Q I L + S +
Sbjct: 222 ALFPVFPELQGIEKVPPSGFHQFNLKEHTLRTVEWVERLAERAEEMLSEEAEVLFKNSHL 281
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKS---------------ILSMAKKFSLPREIRYF 294
E + ++ +L + +++ + + S +
Sbjct: 282 PELPDIGLLELAALYHDVAKPQTMKEENGKLTFYGHDALGAEIAFNAMLRLSFGKRSAKL 341
Query: 295 LISFFNCNFNQ--------KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT- 345
+ + + K F+ L A ++
Sbjct: 342 VKNVIRHHLRPFFLFELFKKGELTERAIYRFFRDTKPYAPHVLLHGAADLCATSREKEKE 401
Query: 346 -----CFILQVLSDII-HWKKPLFPLTGDDVVKY-GI-PPGKKVGNILVHCKQEWINSSF 397
F ++ K LTG+++++ G+ PGK VG I +
Sbjct: 402 LPLYTEFTRHLIKFFKERIKNLKPLLTGEEIMEIKGLSKPGKCVGKIKEKLLELQALGKV 461
Query: 398 QLSQEDLHHLLRKL 411
++E+ L++ +
Sbjct: 462 S-TKEEAAKLVKGI 474
>gi|237803352|ref|ZP_04590937.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331025333|gb|EGI05389.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 77
Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ VGGAVRD L+ V DID + K P + +
Sbjct: 2 QIYKVGGAVRDRLLGQPVTDIDWVVVGASTE--EMLVK---GYRPVGTDF--PVFLHPLT 54
Query: 88 YFDITTLRSD 97
+ R++
Sbjct: 55 NEEYALARTE 64
>gi|69250631|ref|ZP_00605175.1| poly A polymerase [Enterococcus faecium DO]
gi|68193916|gb|EAN08493.1| poly A polymerase [Enterococcus faecium DO]
Length = 178
Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 45/140 (32%), Gaps = 7/140 (5%)
Query: 272 WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331
+ I S K + ++ + + ++T ++ + Y G K + ++
Sbjct: 41 DLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRETGALEPFE--LYFLGKKHALQVEEL 98
Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQ 390
+ + + + + G +++ G PGK V L ++
Sbjct: 99 MIYFDETP----QMDAVGESYDRLPIKSLSELAVDGKILLEETGKKPGKWVSEALQLAEK 154
Query: 391 EWINSSFQLSQEDLHHLLRK 410
+ + ++ + L K
Sbjct: 155 AVVEQRIKNDKKQVLDFLSK 174
>gi|320107144|ref|YP_004182734.1| polynucleotide adenylyltransferase region [Terriglobus saanensis
SP1PR4]
gi|319925665|gb|ADV82740.1| Polynucleotide adenylyltransferase region [Terriglobus saanensis
SP1PR4]
Length = 583
Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/267 (15%), Positives = 87/267 (32%), Gaps = 12/267 (4%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73
L + L+ + GGAVRD V+D+D+ K K
Sbjct: 19 ALTTLRDLVRPKGLTLFLTGGAVRDLTGGAPVRDLDVTVQGN----ALSLRKEIEKFASI 74
Query: 74 SISYGTIKIIC----RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
Y + + ++++ + D RRDFT N++
Sbjct: 75 DGEYDLAQSLYVTFPGGVRVEVSSASTLTFPKPGKPVYAPASIL-DDLRRRDFTANSMAI 133
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGD--AHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187
+ + +++ +ED +R+LR R A G +
Sbjct: 134 SLNDGSYGLLMDPLNGVADIENRELRLVSNYGFIEDPIRLLRAIRLGARLGWHMEERTQA 193
Query: 188 VASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246
+ ++G LS E+ ++ ++P+ A+ + G KE+ + +Q
Sbjct: 194 RYNTAKEEGYISALSPWERGYELEEIAHEEDPIRAMRMLEAEGWMKELAPNWGSAKANQA 253
Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQ 273
+ + E + +L + I++
Sbjct: 254 ALSELQAKNGELQQQGILAYSATIAFP 280
>gi|300088554|ref|YP_003759076.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299528287|gb|ADJ26755.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 503
Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/146 (9%), Positives = 43/146 (29%), Gaps = 18/146 (12%)
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKLKIFLA 334
+ ++ R F + + + +I + Y A L
Sbjct: 345 TRRILERLRFSRREIDFTAAMVKAHLRPVQMGPEAIMPTPRAVARYRRDTGDAALATLYL 404
Query: 335 LHYNNLTHQDTCF--------------ILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGK 379
++L + I + L ++ + G ++ + +G+ PG
Sbjct: 405 SMADHLAARGPALELDNFRQHVTIVAYIREELDRQTAPERHRPLVDGFELQRRFGLKPGP 464
Query: 380 KVGNILVHCKQEWINSSFQLSQEDLH 405
++G ++ ++ ++ +
Sbjct: 465 ELGRLMAELREAQAAGEITNHKDAVE 490
Score = 54.1 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 49/255 (19%), Positives = 86/255 (33%), Gaps = 20/255 (7%)
Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSISYGTIKIICRKKYF 89
IVGG +RD+ + D+D+A D + + + + K P G + R
Sbjct: 36 IVGGFIRDARLGQPSTDLDLAVFGNADELASRLAVELQGKAFPLHTESG----MYRITLL 91
Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-----YADQQGKVIDYVGGLND 144
T R ++ + D RRDFT NA+ D + L
Sbjct: 92 PETGFRQLDLS-------AAVGELSQDLGRRDFTANAVGAPLSGYDPATGRLALTDPLGG 144
Query: 145 LRNRTIKFIGDAHH-RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203
L + K + D R+LR R A G I +D A + ++ E
Sbjct: 145 LDDIDRKILRAVSAGVFRRDPARLLRAARLSAELGF-TIAADTETAIRTEAGLVATVAGE 203
Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263
R E+ LL + I + G+ +F +++ + A VF + ++
Sbjct: 204 RTREELLSLLSLADSGQNIERLDQLGLLTTVFPELEACRGVVQPK-EHAWDVFNHSLKTI 262
Query: 264 LRFIVLISWQDKKSI 278
++ +
Sbjct: 263 AALDWILGYGPWPHA 277
>gi|225390514|ref|ZP_03760238.1| hypothetical protein CLOSTASPAR_04269 [Clostridium asparagiforme
DSM 15981]
gi|225043419|gb|EEG53665.1| hypothetical protein CLOSTASPAR_04269 [Clostridium asparagiforme
DSM 15981]
Length = 172
Score = 60.6 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 10/139 (7%)
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF----- 332
+ + EIR + + S +++ G + M L++
Sbjct: 26 ADQVLGRLGFDGEIRAKIAELVKYHDVDFKESHRSMRRWLSRLGPEQMRRLLEVRRCDIW 85
Query: 333 -----LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
L + T + +V ++ H++ ++G D++K G PG+ +G L
Sbjct: 86 GQNPQLIRERTEEISRFTSILEEVEAEEAHFRVRDLAVSGADLIKIGYTPGRGLGEALRG 145
Query: 388 CKQEWINSSFQLSQEDLHH 406
+ + L
Sbjct: 146 LAAMVEDGRLHNERVSLLE 164
>gi|67624801|ref|XP_668683.1| tRNA adenylyltransferase -related [Cryptosporidium hominis TU502]
gi|54659898|gb|EAL38459.1| tRNA adenylyltransferase -related [Cryptosporidium hominis]
Length = 533
Score = 60.6 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 62/386 (16%), Positives = 128/386 (33%), Gaps = 54/386 (13%)
Query: 29 SCIVGGAVRDSLM---------NLSV-------------QDIDIAT-TILPDRVMRIFSK 65
+ GG VRD ++ N +DIDIA I F++
Sbjct: 62 VRVAGGWVRDKILRFIYLNSAKNKDSCVDNDEEQASTFKKDIDIALDNISGKDFAIGFNR 121
Query: 66 T-----RYKVIPTSI--------SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR 111
Y I + T + + D LRS+ T ++
Sbjct: 122 WLQSHHNYPAHNVGIINRDPDKSKHLETATLAWNEISIDFVGLRSETYTLESRIPIITLG 181
Query: 112 DWKADSLRRDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169
+ D+ RRDFTIN+++ + + I+ G+ DL N I+ D ++D LR LR
Sbjct: 182 TAEEDAFRRDFTINSMFYNLNERKIEDLTCKGIEDLYNGIIRTPLDPMKTFIDDPLRALR 241
Query: 170 FFRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKN---PLNAIVH 224
FRF + + + K+ +S ER+ +E+++++ K P +
Sbjct: 242 AFRFTSRLHFRVDEELLSACKDKSIHDALQTKISRERVGTEVHEMISNKYTGNPAIGLRL 301
Query: 225 MYNGGIFKEIFLDVQE------ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI 278
+ N + +F I+ + + + +I K++
Sbjct: 302 IINSNLVDSVFKFPDNEVIYSFINDSEYHCFSNFGDWYSPGPYLVELTHRIIEILTSKNL 361
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK----KLFYLYGDKVMIAKLKIFLA 334
+++ + + + +S Y +K L ++
Sbjct: 362 SGCLNNSFDYKKLDIIRKLLYIDHESNWGVSTYFSFLLPLSHHYYKNEKNKEIPLVKYII 421
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKK 360
+ L+++ ++Q+ ++
Sbjct: 422 SNSLKLSNKIANSVMQLFDSLLKIIH 447
>gi|253699960|ref|YP_003021149.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Geobacter sp. M21]
gi|251774810|gb|ACT17391.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Geobacter sp. M21]
Length = 416
Score = 60.6 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 59/340 (17%), Positives = 95/340 (27%), Gaps = 30/340 (8%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ + GG VRD L+ + QDID S G + +
Sbjct: 19 RIFLTGGMVRDFLLGVECQDID---------------LAAAVPAAVLASLGFRLVESKST 63
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
+ R D ++ + AD RRDF +NA+ G +ID +GG DL
Sbjct: 64 PNIYFSYREDFGKI-EVTRLESVEELTADLHRRDFRVNAMAMSLDGALIDPLGGKADLEK 122
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
R ++ I +D LRI R FRF + +++ L+AS + ER
Sbjct: 123 RVLRACTP--ASITDDPLRIFRAFRFECEGWRLDGEAEALLASRDWSDAFASIPVERFSQ 180
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267
E+ K L P M + + V E QV
Sbjct: 181 EMLKALAKPAPARFFRRMLEFQAGRNYLPE-----------VFEMTQVIAGPPQHHPEGD 229
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327
+ ++ R F +
Sbjct: 230 LFTHSMQVLERMAALTNDVTSRFCALF-HDLGKLYTPKDQHPKHHGHAALGASAADAFCK 288
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
+L++ AL ++ K +
Sbjct: 289 RLRLPSALQRALKATSKLHDTANKWEELRDSTKIRLAVDA 328
>gi|242786904|ref|XP_002480896.1| poly(A) polymerase, putative [Talaromyces stipitatus ATCC 10500]
gi|218721043|gb|EED20462.1| poly(A) polymerase, putative [Talaromyces stipitatus ATCC 10500]
Length = 581
Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 104/366 (28%), Gaps = 43/366 (11%)
Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSK---------------- 65
N+ VGG VRD L+ DID+A + + + +
Sbjct: 65 NRNAGDMWFVGGWVRDKLLGKQSCDIDVAMSNMTGPEFSSLLKEFLSLESDKSRTTTKGD 124
Query: 66 ------------TRYKVI-------PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK 106
+ T D LR++ +
Sbjct: 125 IYKEQATKRGLPAEIRGFYEIDRNPKKGKHLQTTSAKIFGLDIDFVNLRTENDLTD---Q 181
Query: 107 VVFTRDWKADSLRRDFTINALYADQQGKVIDYV--GGLNDLRNRTIKFIGDAHHRILEDY 164
+ D+ RRD T+N+++ + + I+ GL+DL+ + ++ DA +D
Sbjct: 182 EGSVSRAEQDAKRRDATVNSIFYNLDSQEIEDYTANGLSDLKAKVLRTPLDARKTFTDDP 241
Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224
LRILRF R + G + + L + + P
Sbjct: 242 LRILRFVRLASTLGFTIDEGTETTIRDSEIQCLISTRTSPERIGLELKKMITGPDPVTAL 301
Query: 225 MYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284
M+ + + + S L +V E+E+ +S V S K
Sbjct: 302 MWIHRLGLYKQVFLCGQSQKVLDKVAESEESEAKGWESEKGEYVWPSA--WPEACKTVSK 359
Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344
LP L + + + + + + L + +
Sbjct: 360 LFLPESKDSLLATELAQSQDIELVWQMAVWCPLALLCQPDDTRPFPVVKPATKAIHATNE 419
Query: 345 TCFILQ 350
+L+
Sbjct: 420 KSRLLE 425
>gi|3913200|sp|Q47907|CCA_FRANO RecName: Full=CCA tRNA nucleotidyltransferase; AltName:
Full=CCA-adding enzyme; AltName: Full=tRNA
CCA-pyrophosphorylase; AltName: Full=tRNA
adenylyltransferase
gi|930293|gb|AAD15236.1| cca [Francisella novicida U112]
Length = 84
Score = 60.2 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
+VGGAVRD L+ ++ +D D + + + K+ I +
Sbjct: 4 YLVGGAVRDMLLGITPKDKDWVVVGATED--EMLANGFIKIAANF-----PVFIHPQTKQ 56
Query: 90 DITTLRSDLITDGRYAKVVFTRDW 113
+ RS+ T Y
Sbjct: 57 EYALARSEKKTRNGYHGFEVNFSK 80
>gi|225182005|ref|ZP_03735437.1| Polynucleotide adenylyltransferase region [Dethiobacter
alkaliphilus AHT 1]
gi|225167290|gb|EEG76109.1| Polynucleotide adenylyltransferase region [Dethiobacter
alkaliphilus AHT 1]
Length = 429
Score = 60.2 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 57/427 (13%), Positives = 114/427 (26%), Gaps = 53/427 (12%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
L + K + +VGG +RD D+D+ F+K
Sbjct: 4 LNKFAAEAQKQNLEIYLVGGFLRDLFSGRQSTDMDLTGEPGLISFADKFAKAHKLSAHLV 63
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+ +++ DI+ + I D RDF++NA+ +
Sbjct: 64 ERHKLLRLTLSGLRLDISEFKGADIGH--------------DLALRDFSVNAMALPLRD- 108
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRIL-------EDYLRILRFFRFFAHYGEKNIDSDGL 187
++ + L + R+ +D LR++R R H+G +S
Sbjct: 109 YLEQPHSKSTLIDPYQGLEDLTRQRLCALPGALRDDPLRVMRGARLALHFGLTPDESTVR 168
Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPL-NAIVHM----YNGGIFKEIFLDVQEIS 242
A A + L + + Y G D
Sbjct: 169 EARSVAPLLPDLPGERIAAEIFATLQSKCTGYLPLLETLGAARYVFGKPFSAGHDHVMAQ 228
Query: 243 LDQLSQVIEAEQVFEW--------------------KIDSLLRFIVLISWQDKKSILSMA 282
++L + K+ +LL + I +
Sbjct: 229 TEKLLNANHWPESIRHRLQQNLARSLSAQTRGYQVLKLAALLCDLDGIVDGISPQTIHHI 288
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD---KVMIAKLKIFLALHYNN 339
+K+ L R+ R L + + + Y Y + + A+
Sbjct: 289 RKYPLSRQERASLSALQGALDWLRCFGGNLKSRSLYSYYSRFGPAGLDAAVLLRAVDGAA 348
Query: 340 LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKK--VGNILVHCKQEWINSS 396
+ + ++L + P +TG ++ G +G + +
Sbjct: 349 ARSRAVFLLKKLLPEGNLLVSPPDFMTGRELAAMVGKRRQPASRIGELQKALHRASALGD 408
Query: 397 FQLSQED 403
QE
Sbjct: 409 VANRQEA 415
>gi|189425419|ref|YP_001952596.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Geobacter lovleyi SZ]
gi|189421678|gb|ACD96076.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Geobacter lovleyi SZ]
Length = 402
Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 67/394 (17%), Positives = 116/394 (29%), Gaps = 56/394 (14%)
Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90
VGG VRD L+ D D IA + ++++ + + +
Sbjct: 23 VGGTVRDFLLQQPASDYDLIAVLP-----EELLPLLGFRLVA-GKTTRPVWFHHDAQLGK 76
Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150
+ +R D + AD RDFTINA+ G++ D + G +DL+ R +
Sbjct: 77 LELIRLDDL-----------CQLDADLSCRDFTINAIALSLSGRLYDPLNGQHDLQQRLL 125
Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210
+ ED LRI+R RF A ++ L+ L L ER E+
Sbjct: 126 RLCSG--RSFAEDPLRIIRGIRFVADGWRMVPETAQLIQQQDWSAQLACLPVERFSREMI 183
Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDV---QEISLDQLSQ----------VIEAEQVFE 257
K L A M + + ++ +I L + ++V
Sbjct: 184 KALAANRAERFFELMIQYRLGTDWLPELFRMPDIPAGPLQHHPEGDLLTHCLQVLQRVAA 243
Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317
D L RF K S + F ++ C
Sbjct: 244 VTPDPLTRFCAFFHDIGKLSTDPALYPKHHGHDEAGFKLALNLCKQLCLPAEWGRALAWT 303
Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
+ ++ A I ++L ++ D P
Sbjct: 304 SRL-HTNLNRWAELRDATRLRIAEQACKAGISRIL----------PVVSAAD------KP 346
Query: 378 G---KKVGNILVHCKQEWINS-SFQLSQEDLHHL 407
G + +NS + ++ L +
Sbjct: 347 GNSTPD--QWFQALEIAAMNSAQLGIDKDQLEAM 378
>gi|149921747|ref|ZP_01910194.1| hypothetical protein PPSIR1_24634 [Plesiocystis pacifica SIR-1]
gi|149817398|gb|EDM76871.1| hypothetical protein PPSIR1_24634 [Plesiocystis pacifica SIR-1]
Length = 853
Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 23/176 (13%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR-----VMRIFSKTRYK----- 69
++ KS IVGGA RD L L+ DID A+T+ V + ++
Sbjct: 614 DVIKGANFKSWIVGGATRDILRGLNPADIDFASTMPAIDSFNAIVEQGLARKNADPNDPN 673
Query: 70 --VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127
I ++ +G++++ + + L + + D+L RDFTINA+
Sbjct: 674 DLAIRRNVPFGSVQVEADIE--------TGLDIISTHDGHDASLRLDLDALARDFTINAV 725
Query: 128 YADQQGKVIDYVGGLNDLRNRTI---KFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
Y D G + G + G + + + + R+ R
Sbjct: 726 YYDIDGDALVDPTGTGLADLASSTLRFVAGTPDEVLGAEPVMVARWMRMIGKGFNP 781
>gi|219849928|ref|YP_002464361.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Chloroflexus aggregans DSM 9485]
gi|219544187|gb|ACL25925.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Chloroflexus aggregans DSM 9485]
Length = 489
Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 57/269 (21%), Positives = 97/269 (36%), Gaps = 46/269 (17%)
Query: 18 ILSLLNKGEDK-SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI----- 71
+ + D+ +VGG+VR+ L DID+A + + +
Sbjct: 13 LFQFIAMHSDQPVWLVGGSVRELLAGRQPADIDLAVAGSGLDLAKTLATAGGGTFVALDD 72
Query: 72 --PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
T + ++ + D LR+ D D RDFTINAL
Sbjct: 73 ERDTGRA-----VLPGGETIDCARLRAA--------------DIIGDLRLRDFTINALAL 113
Query: 130 D-------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ID +GG DL ++ R ED LR++R RF + +
Sbjct: 114 PLAAAIRGDWHDLIDPLGGQADLAAGRLRLCLPTGLR--EDPLRVVRAGRFRSTH-HLTP 170
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-- 240
D + + + +A L ++ ERI EI KL + + + IF +++
Sbjct: 171 DPELITMAQQAAPALATVAVERIRDEILKLCDGSAAAAGLRFLDEVRALTVIFPELEAAR 230
Query: 241 -------ISLDQLSQVIEAEQVFEWKIDS 262
L L+ ++E +W ID+
Sbjct: 231 DCEQPYVHFLPVLAHILETVAALDWLIDN 259
Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 21/148 (14%)
Query: 285 FSLPREIRYFLISFFNCNFNQKTL------SIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
L R ++++ + + + I + F GD L
Sbjct: 342 LRLSRTDTAYIVTIVREHMRPGQMRSGGQLTERGINRFFRDTGDAGPDVLLHELADHLAT 401
Query: 339 NLTHQDTCFIL-------QVLSDIIH--WKKPLFPLTGDDVVK-YGIPPGKKVGNILVHC 388
D ++L + P L GD+++ GI PG +VG +L
Sbjct: 402 RGPWLDPSAWHNHLVWVGELLDRYWNAPTPPPPPLLRGDELMASLGIGPGPEVGRLLRLI 461
Query: 389 KQEWINSSFQLSQEDL-----HHLLRKL 411
+ +E L H +L
Sbjct: 462 LEAQQAGEIHNLEEALTLARTLHRAERL 489
>gi|238797182|ref|ZP_04640684.1| hypothetical protein ymoll0001_8960 [Yersinia mollaretii ATCC
43969]
gi|238719029|gb|EEQ10843.1| hypothetical protein ymoll0001_8960 [Yersinia mollaretii ATCC
43969]
Length = 86
Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ 46
+ + +L LNK ++ +VGG VRD L+ +
Sbjct: 50 SDNALKVLYRLNKSGYEAYLVGGGVRDLLLGQKTK 84
>gi|332704240|ref|ZP_08424328.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfovibrio africanus str. Walvis Bay]
gi|332554389|gb|EGJ51433.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfovibrio africanus str. Walvis Bay]
Length = 386
Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 53/215 (24%), Positives = 82/215 (38%), Gaps = 27/215 (12%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGGAVRD L+ D DI + + F + + T + +
Sbjct: 2 KLFLVGGAVRDLLLGRPRSDEDILVFGMSREEFRQRFPMAK----EVGRT--TPSFVLK- 54
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146
GR + D AD RD TINAL D+QG++ + L DL
Sbjct: 55 ---------------GREYMLPRGPDIDADLAARDLTINALALDEQGQLYAHPRALEDLH 99
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK--AKKGLKILSSER 204
R ++ ++ D +R+LR RF A E + L + + K L ER
Sbjct: 100 YRILRPASP--DSLIADPVRVLRAARFSAELPEFTASGELLQSMREAAQKADYAELPRER 157
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ EI K + A P + + G F +++
Sbjct: 158 VSKEILKAMGAPQPSRFVGLLAQTGALAPWFAEIE 192
>gi|187251643|ref|YP_001876125.1| metal dependent phosphohydrolase [Elusimicrobium minutum Pei191]
gi|186971803|gb|ACC98788.1| Metal-dependent phosphohydrolase [Elusimicrobium minutum Pei191]
Length = 500
Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 61/252 (24%), Positives = 97/252 (38%), Gaps = 47/252 (18%)
Query: 18 ILSLLNKG-EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR-----IFSKTRYKVI 71
I +L + ++SC VGG +RDS++ D+DIA LP ++ + K
Sbjct: 4 IAKILKETLPEQSCYVGGCLRDSILKRPSGDVDIA---LPKENIKKYALTLAKKLSATAF 60
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130
+G ++I +K I +D K D RRDFTINAL
Sbjct: 61 EMDAKFGVWRLITKKGNLQIDL------------TAFQGKDLKQDLQRRDFTINALAYPV 108
Query: 131 ----------------------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168
+ ++ID + D++N+T+K + ED LR L
Sbjct: 109 SAQPEIKLLTETSKTFVRITKLKNKEIIDLATSVKDIKNKTVKMS--NNKVFKEDPLRSL 166
Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228
R FR G ID L K K + + ERI E+ ++ N + M
Sbjct: 167 RAFRTATELGF-KIDKKTLEQIKKDAKQINKSAGERIREELVRIFNQNNTKKHLEDMDRC 225
Query: 229 GIFKEIFLDVQE 240
G+ +F +++
Sbjct: 226 GLLTALFPILED 237
Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 347 FILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
+ P + G +++ I PG +G IL + + + +
Sbjct: 433 LFKKYFEQTPKINPPKI-IDGKEIMTALKIKPGPVIGEILEAVALAQVEGKVKNKSDAV- 490
Query: 406 HLLRKLI 412
++ L
Sbjct: 491 KFIKTLK 497
>gi|330828251|ref|YP_004391203.1| multifunctional Cca protein [Aeromonas veronii B565]
gi|328803387|gb|AEB48586.1| Multifunctional Cca protein [Aeromonas veronii B565]
Length = 387
Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 60/319 (18%), Positives = 110/319 (34%), Gaps = 20/319 (6%)
Query: 52 TTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRY----AKV 107
++++ + + + K + R++ Y
Sbjct: 2 VGATVEQMLAL------GFTQVGRDF--PVFLHPKTQQEYALARTERKQGQGYTGFVCHA 53
Query: 108 VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167
+ D LRRD TINA+ D QG++ D GG+ DL R ++ + ED LRI
Sbjct: 54 APDVTLEQDLLRRDLTINAIAEDDQGQLHDPYGGIKDLEKRLLRHV---SPAFAEDPLRI 110
Query: 168 LRFFRFFAHYGEKNIDSDGL----VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223
LR RF A + + ++ + A L L+ ER+W E+ K+L P I
Sbjct: 111 LRVARFAARFHAQGFTIAPETLALMSEMTAAGELAHLTPERVWKELEKVLLGPTPQIFIE 170
Query: 224 HMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK 283
+ G K +F ++ + E +L IS + ++
Sbjct: 171 VLRQCGALKALFPEIDALFGVPAPAKWHPEIDTGIHTLMVLEQACRISPELTVRFAALCH 230
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
+ F + + + I + + F + + +A L L H +
Sbjct: 231 DLGKGVTPKEFW-PSHHGHGQKGLPLIRALCERFRVPNECRDLALLVSDLHTHIHIAFEL 289
Query: 344 DTCFILQVLSDIIHWKKPL 362
+L+V W++P
Sbjct: 290 KPATLLKVFDKADAWRRPE 308
>gi|169837879|ref|ZP_02871067.1| Poly(A) polymerase [candidate division TM7 single-cell isolate
TM7a]
Length = 153
Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Query: 57 DRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK-VVFTRDWKA 115
D + +IFS Y ++G + I + F+I R+D+ +DGR V F D +
Sbjct: 4 DDIKKIFSD--YPTKEVGKAFGILIIHYEDENFEIAKFRTDIGSDGRRPNSVEFVNDIED 61
Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
D LRRDFT NA+ +++ +ID G D++N+ I+F+G R+ ED LR++R FRF +
Sbjct: 62 DLLRRDFTFNAMAFNEKDGLIDIFNGQEDIKNKIIRFVGKPKKRLQEDGLRLMRAFRFMS 121
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
G + + K L +E +
Sbjct: 122 QLGFDFEKNTEIAIKENIHVLEKFLKNELQMN 153
>gi|315042315|ref|XP_003170534.1| tRNA nucleotidyltransferase [Arthroderma gypseum CBS 118893]
gi|311345568|gb|EFR04771.1| tRNA nucleotidyltransferase [Arthroderma gypseum CBS 118893]
Length = 604
Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/232 (20%), Positives = 82/232 (35%), Gaps = 33/232 (14%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSK---------------------- 65
GG VRD ++ + QDID+ + + +
Sbjct: 119 LRFTGGWVRDKVLGVGSQDIDVGISTMTGYDFGLALKEYLDIPEKLEKYKAHYPEHALKG 178
Query: 66 -----TRYKVIPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119
+ P + T I D+ LR + TD V + D+ R
Sbjct: 179 VIGGLHKIAANPQKSKHLETTTIRVFGFDVDLVNLRKETYTDTSRNPQVEFGTAEEDAFR 238
Query: 120 RDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RD TINAL+ + ++ G +D+ ++ I+ + + +D LR+LR RF +
Sbjct: 239 RDATINALFYNIHTGEVEDFTGRGLSDMGDKLIRTPMEPYQTFKDDPLRVLRLIRFASRL 298
Query: 178 GEKNIDSDGLVASIKA--KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227
G + +S ERI EI K+L +PL ++ +
Sbjct: 299 GYTIDPNTEESMYNDDIKHSLRLKISQERIGIEIEKMLRGPDPLGSLEIINR 350
Score = 38.3 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 12/96 (12%), Positives = 25/96 (26%), Gaps = 7/96 (7%)
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK-----KPLFPLTGDD-VVKYGI 375
D + I L + L+VL + + G D +
Sbjct: 504 DWRLCFVQAILLDVMQGKAAQPVLDEYLKVLKFLEEQNLLEVNNLKPLVNGRDMIKALNS 563
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410
G + L + I + + + +R+
Sbjct: 564 KAGAWLTTALDIAVEWQIRNPDRTDAAGAIEEAIRR 599
>gi|163847879|ref|YP_001635923.1| polynucleotide adenylyltransferase region [Chloroflexus aurantiacus
J-10-fl]
gi|222525752|ref|YP_002570223.1| polynucleotide adenylyltransferase region [Chloroflexus sp.
Y-400-fl]
gi|163669168|gb|ABY35534.1| Polynucleotide adenylyltransferase region [Chloroflexus aurantiacus
J-10-fl]
gi|222449631|gb|ACM53897.1| Polynucleotide adenylyltransferase region [Chloroflexus sp.
Y-400-fl]
Length = 500
Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 47/156 (30%), Gaps = 17/156 (10%)
Query: 272 WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL------SIPEIKKLFYLYGDKVM 325
+ +L +A++ L R +L + + + I + F GD
Sbjct: 340 GLGAERVLIIAQRLRLSRADTAYLACIVREHMRPGQMRSGGQLTERGIARFFRDTGDAGP 399
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDII---------HWKKPLFPLTGDDVVK-YGI 375
L D + L + P L GD ++ GI
Sbjct: 400 DILLHELADHLATRGPWLDPMAWREHLHWVAMMLNHYWNAPTPPPPPLLRGDTLMAALGI 459
Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
PG +VG +L + + +E + L R L
Sbjct: 460 KPGPEVGRLLRLIHEAQLAGEIHSPEEAI-ALARTL 494
Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 62/413 (15%), Positives = 128/413 (30%), Gaps = 56/413 (13%)
Query: 10 FHDSDLINILSLLNKGEDK-SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR- 67
+ L N+ L+ + +VGGAVR+ L D+D+A + + +
Sbjct: 16 MVNDQLNNLFQLITACTSRPVWLVGGAVRELLTGHQPVDLDLAIDGSGLALAQALADAGQ 75
Query: 68 YKVIPTSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126
+ T +++ D LR+ D +D RDFT+NA
Sbjct: 76 GTFVLLDRERDTGRVVLPDSIVIDCARLRAT--------------DIVSDLYLRDFTVNA 121
Query: 127 LYADQQGKVIDYV-------GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179
L G DL R ++ R +D LR++R RF A + +
Sbjct: 122 LALPLDAARWGDWSALLDPLDGQADLAARRLRPCTPTSLR--DDPLRVIRAGRFRATH-Q 178
Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239
+ + + + L ++ ERI E+ KL + + + G IF +++
Sbjct: 179 LIPVPELVTPAREVVPLLSAIAVERIRDELLKLCDGLAAAAGLRFLDQVGALTAIFPELE 238
Query: 240 ----------------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK 283
L+ ++ + E + + ++
Sbjct: 239 AARTCDQPHVHFLPVLAHMLETVAALDWLIDNGEPPVAVQTHPHLERILPFADQYQALLH 298
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
+ L + N K + + + ++ + L+
Sbjct: 299 QRRGNVRRAALLKLAALLHDNAKPQTKVSHPDGTVTFYGHQGLGAERVLIIAQRLRLSRA 358
Query: 344 DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP--------PGKKVGNILVHC 388
DT ++ ++ + H + +G + + GI G + +L
Sbjct: 359 DTAYLACIVRE--HMRPGQMR-SGGQLTERGIARFFRDTGDAGPDI--LLHEL 406
>gi|66359190|ref|XP_626773.1| Cca1p, tRNA adenylyltransferase [Cryptosporidium parvum Iowa II]
gi|46228193|gb|EAK89092.1| Cca1p, tRNA adenylyltransferase [Cryptosporidium parvum Iowa II]
Length = 673
Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 61/386 (15%), Positives = 126/386 (32%), Gaps = 54/386 (13%)
Query: 29 SCIVGGAVRDSLM---------NLSV-------------QDIDIAT-TILPDRVMRIFSK 65
+ GG VRD ++ N +DIDIA I F++
Sbjct: 62 VRVAGGWVRDKILRFIYLNSAKNKDSCADNDEEQASTFKKDIDIALDNISGKDFAIGFNR 121
Query: 66 T-----RYKVIPTSI--------SY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR 111
Y I + T + + D LRS+ T ++
Sbjct: 122 WLQSHHNYPAHNVGIINRDPDKSKHLETATLAWNEISIDFVGLRSETYTLESRIPIITLG 181
Query: 112 DWKADSLRRDFTINALYADQQGKVIDY--VGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169
+ D+ RRDFTIN+++ + + I+ G+ DL N I+ D ++D LR LR
Sbjct: 182 TAEEDAFRRDFTINSMFYNLNERKIEDLTCKGIEDLYNGIIRTPLDPMKTFIDDPLRALR 241
Query: 170 FFRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKN---PLNAIVH 224
FRF + + + K+ +S ER+ +E+++++ K P +
Sbjct: 242 AFRFTSRLHFRVDEELLSACKDKSIHDALQAKISRERVGTEVHEMISNKYTGNPAIGLRL 301
Query: 225 MYNGGIFKEIFLDVQE------ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI 278
+ N + +F I+ + + + +I ++
Sbjct: 302 IINSNLVDSVFKFPDNEVIYSFINDSEYHCFSNFGDWYSPGPYLVELTHRIIEILTSNNL 361
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK----KLFYLYGDKVMIAKLKIFLA 334
+++ + + +S Y +K L ++
Sbjct: 362 SGCLNNSFDYKKLDIIRKLLYIDQESNWGVSTYFSFLLPLFHHYFKNEKNKEIPLVKYII 421
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKK 360
+ L+++ ++Q+ ++
Sbjct: 422 SNSLKLSNKIANSVMQLFDSLLKIIH 447
>gi|303326747|ref|ZP_07357189.1| tRNA nucleotidyltransferase [Desulfovibrio sp. 3_1_syn3]
gi|302862735|gb|EFL85667.1| tRNA nucleotidyltransferase [Desulfovibrio sp. 3_1_syn3]
Length = 368
Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/270 (20%), Positives = 87/270 (32%), Gaps = 34/270 (12%)
Query: 33 GGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDIT 92
GGAVRD L+ ++D A + M F P +
Sbjct: 2 GGAVRDLLLGRVPVELDFAFSGD----MADFLAAHPDARPVGK------------SVRVC 45
Query: 93 TLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKF 152
R GR + KAD L RD T+NA+ D +G + + L DLR R ++
Sbjct: 46 LWR------GRECMPLRGGSLKADLLARDLTVNAMALDSRGLLRFHPEALADLRARRLRP 99
Query: 153 IGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSERIWSEINK 211
+ +D R+ R RF A + + +D + +ER+ E+ K
Sbjct: 100 AS--STALADDPARVFRLARFAAQWPDWQVDDAAYGQMRALPAATLAAIPAERVCRELRK 157
Query: 212 LLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFEWKI--------DS 262
L A P + G F +++ + V + D+
Sbjct: 158 ALAAPAPARFFEILAKGNALSPWFPELEAARDIPAGPARWHKNSVLGHTLRIMNLTAGDA 217
Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIR 292
L ++ L K S E R
Sbjct: 218 LAAWMALCHDLGKVSTDPSLLPHHYGHERR 247
>gi|197119266|ref|YP_002139693.1| tRNA nucleotidyltransferase [Geobacter bemidjiensis Bem]
gi|197088626|gb|ACH39897.1| tRNA nucleotidyltransferase, putative [Geobacter bemidjiensis Bem]
Length = 399
Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/344 (15%), Positives = 102/344 (29%), Gaps = 38/344 (11%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
+ + GG VRD L+ ++ QD+D+ S G + +
Sbjct: 19 RIFLTGGMVRDFLLGVACQDVDL---------------AAAVTAAELASLGFRLVESKST 63
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
+ R + ++ + +D RRDF +NA+ G +ID + G DL
Sbjct: 64 PNIYFSYRQEFGKI-EVTRLESVEELTSDLFRRDFRVNAMAMSLDGALIDPLHGKADLEQ 122
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207
R + I +D LRI R RF + +++ L+ S+ + ER
Sbjct: 123 RILSAC--TQTSITDDPLRIFRALRFECEGWHLDREAEALLVSLDWSDAFAAIPVERFSQ 180
Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEWKIDSLLR 265
E+ K L P + M + ++ E+ + Q +F + +L R
Sbjct: 181 EMLKALAKPEPAHFFRRMVEFEAGRNYLPEIFEMQQVIAGPPQHHPEGDLFTHSMQTLER 240
Query: 266 FIVLISWQD--KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323
L ++ K P+
Sbjct: 241 MAALTDDVTGRFCALFHDLGKLYTPK----------------DQHPKHHGHDALGASAAD 284
Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
+L++ AL ++ K +
Sbjct: 285 AFCKRLRLPSALQRALKATSKLHDTANKWEELRDSTKIRLAVDA 328
>gi|209526171|ref|ZP_03274702.1| polynucleotide adenylyltransferase region [Arthrospira maxima
CS-328]
gi|209493427|gb|EDZ93751.1| polynucleotide adenylyltransferase region [Arthrospira maxima
CS-328]
Length = 96
Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHC 388
+ L++ + T I L+ P ++G ++ K G+ P +G++L
Sbjct: 8 LVVLSIAAGASLQEFTTLINHYLNPDDAIAHPQPVISGKLLMAKLGLSPSPLLGDLLQEI 67
Query: 389 KQEWINSSFQLSQEDLHHLLRKLIA 413
+ S++ + +K++
Sbjct: 68 QIAKAEGQISTSEDAIAIASQKMLE 92
>gi|284054479|ref|ZP_06384689.1| polynucleotide adenylyltransferase region [Arthrospira platensis
str. Paraca]
Length = 111
Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364
++ I++ ++L+ + + L++ + T I L+ P
Sbjct: 2 PTPIADLSIRQQYFLFANVGEFFPALVVLSIAAGASLQEFTTLINHYLNPDDAIAHPQPV 61
Query: 365 LTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
++G ++ K G+ P +G++L + ++ + +K++
Sbjct: 62 ISGKLLMAKLGLSPSPLLGDLLQEIQIAKAEGQISTREDAIAIASQKMLE 111
>gi|238797183|ref|ZP_04640685.1| Poly(A) polymerase [Yersinia mollaretii ATCC 43969]
gi|238719030|gb|EEQ10844.1| Poly(A) polymerase [Yersinia mollaretii ATCC 43969]
Length = 377
Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 53/322 (16%), Positives = 107/322 (33%), Gaps = 29/322 (9%)
Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD---------------GR 103
+ ++F R + ++ + ++ T R G
Sbjct: 1 MRKLFRNCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGM 56
Query: 104 YAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILE 162
+ + D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R E
Sbjct: 57 LLRDNIFGTIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYRE 116
Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222
D +R+LR RF A I + + L+ + R++ E KLL++
Sbjct: 117 DPVRMLRAVRFAAKLDM-TICPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTY 175
Query: 223 VHMYNGGIFKEIFL-------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK 275
+ + +F+ +F + + ++++ + D + L +
Sbjct: 176 LKLCEYQLFQPLFPLIARHFTEQHDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLW 235
Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
++ A+K + + Y+ N + I K + + +L++
Sbjct: 236 YPLIEHAQKLTQESGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRR 295
Query: 335 LHYNNLTHQDTCFILQVLSDII 356
+ +
Sbjct: 296 QGKRAHKLMEHPKFRAAYDLLA 317
>gi|237755853|ref|ZP_04584450.1| poly A polymerase [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691989|gb|EEP61000.1| poly A polymerase [Sulfurihydrogenibium yellowstonense SS-5]
Length = 301
Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/250 (20%), Positives = 86/250 (34%), Gaps = 25/250 (10%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSK-TRYKVIPT 73
+ L KG +VGG VRD ++N + DID T P +V+ K + +
Sbjct: 43 VAKALPKGSF-CFLVGGWVRDRIINRPIGENIDIDFIITADPLQVVNNLKKFIKGDIFQF 101
Query: 74 SISYGTIKIICR----KKYFDITTLR-----SDLITDGRYAKVVFTRDWKADSLRRDFTI 124
+ + FD + L S+ D + D L RDFTI
Sbjct: 102 EKEKKVATFLFKENNYNYRFDFSYLDISDILSNPDIDFYQKEESILERLIKDLLERDFTI 161
Query: 125 NALYADQQGK---------VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175
NA+ + +ID G DL++ I+ I + I++D +RILR +R
Sbjct: 162 NAIAVNFDDTSSLSASTTVLIDPSNGFKDLQDGIIRPISIEN--IIKDPVRILRGYRLAL 219
Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235
K + + + + N + K I
Sbjct: 220 ELDFTIDKEFEKFVKNNPNLIEKSPKERIRDELLKIISNENSKDTLNKLLENKILKKVIS 279
Query: 236 LDVQEISLDQ 245
+++++ L +
Sbjct: 280 ENLKDLKLYE 289
>gi|212704176|ref|ZP_03312304.1| hypothetical protein DESPIG_02231 [Desulfovibrio piger ATCC 29098]
gi|212672380|gb|EEB32863.1| hypothetical protein DESPIG_02231 [Desulfovibrio piger ATCC 29098]
Length = 444
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 56/452 (12%), Positives = 139/452 (30%), Gaps = 70/452 (15%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDI--DIATTILPDRVMRIFSKTRY-- 68
D I I L + + ++ V++ L+ + + DIA + ++++F +
Sbjct: 6 KDAITICKTLLRNGYDAHVINAPVQEHLL-KHSKQLAVDIACEPDLETLLKLFPEAHVEP 64
Query: 69 --KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRY-AKVVFTRDWKADSLRRDFTIN 125
+ I G ++ R ++ ++ R + D + R
Sbjct: 65 DQRAIAQMEKDG---VLFRFYALEVEDASHPELSLLRITPTMANMMDPQERLQLRMTGFG 121
Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185
+ G D++ I+ G + +YL +R RF A++ I+ +
Sbjct: 122 SPAPTGD-----VYDGFMDVKGGLIQLTGLPDETLRHNYLLAIRALRFAANFDI-PIEPN 175
Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245
+A +++ + + + + A++ + M++ I + + +V ++ +
Sbjct: 176 TWLAIVRSSTRVLDYVPAADIMDEWRKVAAESMYRFVKLMFDAHILQGLIPEVAALACIR 235
Query: 246 LSQVIE---AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK------------------ 284
+ + E VF+ ++ + + D ++M
Sbjct: 236 QRRNDDDDTEETVFDHTLECMRHYPEEGFHYDWLGTMAMLFHDVGKLFTGEYFDGQWTFY 295
Query: 285 ----------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328
E L + + + F + +
Sbjct: 296 QHHRVGAKVTRKILRRLHFSPEDIDLLCHLVRYHMRFHFMLTDRGIRRFK------ALDE 349
Query: 329 LKIFLALHYNNLTHQD--TCFILQVLSDIIHWKKP----LFPLTGDDVV-KYGIPPGKKV 381
+A+ ++ +D + + + + P L G++++ + + PG V
Sbjct: 350 YPRLIAMSRADIQARDGSYTYFNHNMKYLERAETPEQMLEPLLNGNEIMSETKLAPGPLV 409
Query: 382 GNILVHCKQEWINSSFQLSQEDLH---HLLRK 410
G I Q I LH RK
Sbjct: 410 GVIRDALLQAQIAGEVTDRASALHFVCEYARK 441
>gi|322693496|gb|EFY85354.1| poly(A) polymerase [Metarhizium acridum CQMa 102]
Length = 427
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 32/196 (16%)
Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIA----TTILPDRVMRIF-------SKTRYKVIPTS 74
+ I GG VRD L+++ D+D A T + + F +K K I
Sbjct: 30 GLEIWITGGWVRDRLLDIPSSDLDEALNNITGRDFGKFLEAFSSRPDIQAKYHQKAIELG 89
Query: 75 I---SY----------------GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115
I + T D+ LR ++ A + +
Sbjct: 90 IPDARFSRFHILERNADKAKNLETAGGKLFGLDIDLVILRKEVYDGHSRAPEMQFGTPEE 149
Query: 116 DSLRRDFTINALYADQQGKVIDYVGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
D+ RRD T+N+L+ + + + + G +DL +R ++ D ++D LR LR R
Sbjct: 150 DAFRRDATVNSLFFHLERQEVVDLTGKGLDDLESRIMRTPLDPRQTFMDDPLRTLRLIRV 209
Query: 174 FAHYGEKNIDSDGLVA 189
++
Sbjct: 210 GQSKSLPWPNTWPRAY 225
>gi|213859840|ref|ZP_03385544.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. M223]
Length = 176
Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 18/180 (10%)
Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAK 106
V ++F R + ++ + ++ T R +G +
Sbjct: 1 VRKLFRNCRL----VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLR 56
Query: 107 VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165
+ D+ RRDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +
Sbjct: 57 DNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPV 116
Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225
R+LR RF A I + + L + R++ E KLL+A N +
Sbjct: 117 RMLRAVRFAAKLNM-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQL 175
>gi|328462375|gb|EGF34435.1| tRNA CCA-pyrophosphorylase [Lactobacillus rhamnosus MTCC 5462]
Length = 44
Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 33 GGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64
GG+VRD+L+ L + D+DIA++ P+ + RI S
Sbjct: 2 GGSVRDALLGLPIHDVDIASSAYPEEIKRILS 33
>gi|160937020|ref|ZP_02084383.1| hypothetical protein CLOBOL_01909 [Clostridium bolteae ATCC
BAA-613]
gi|158439921|gb|EDP17669.1| hypothetical protein CLOBOL_01909 [Clostridium bolteae ATCC
BAA-613]
Length = 264
Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 10/141 (7%)
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF--------- 332
K+ E ++ + + I+ G+K L++
Sbjct: 121 MKRLKFDEETIDTVVELVRYHDSDLHEKRRSIRTWLDRLGEKQFRRLLEVRRCDVSGQNP 180
Query: 333 -LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
H+ + +V+ + + G D+++ G PG +G+ L +
Sbjct: 181 ACLAERLARIHRLEALLDEVVEQTGQFHIKDLDINGSDLIQIGYTPGSSIGSTLSKLADQ 240
Query: 392 WINSSFQLSQEDLHHLLRKLI 412
+ + ++ L + +
Sbjct: 241 VVEGVMENKRDILLREAGRWL 261
>gi|297569286|ref|YP_003690630.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfurivibrio alkaliphilus AHT2]
gi|296925201|gb|ADH86011.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Desulfurivibrio alkaliphilus AHT2]
Length = 510
Score = 56.8 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 14/139 (10%)
Query: 291 IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
+R+ + F N ++T P + + A + +A + +
Sbjct: 371 VRHHMWPFHLNNARRRTGIKPRACLRLVRALGEDLPALFFLAMADSLAGRGPGKPPAMER 430
Query: 351 VL------------SDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSF 397
L + + L G D+ + G+ PG IL +Q + +
Sbjct: 431 ELASLHAEVMRVAEEQLAPVLQQPPLLNGHDLQQLLGLTPGPWFKKILAGLEQARVEGAV 490
Query: 398 QLSQEDLHHLLRKLIASSQ 416
QE L +R + Q
Sbjct: 491 CTRQEAL-AWVRNFVTVQQ 508
Score = 53.3 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 30/132 (22%)
Query: 17 NILSLLNKGEDK-SCIVGGAVRDSL-------------MNLSVQDIDIATTILPDRVMR- 61
+ +L + + GGA+RD L + D+D R
Sbjct: 17 ALQEVLRRRGAPPLYLAGGALRDWLVGGSRPAVEAAAGLGR---DLDFTLPAGAVAFARD 73
Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+ + ++ + +++ + + D R + D RRD
Sbjct: 74 LAGELGGTLVVLDREHDVARLVWQGRELDFAAFREGAA------------SIEEDLRRRD 121
Query: 122 FTINALYADQQG 133
FTINA+
Sbjct: 122 FTINAMAWRLNP 133
>gi|262199961|ref|YP_003271170.1| metal dependent phosphohydrolase [Haliangium ochraceum DSM 14365]
gi|262083308|gb|ACY19277.1| metal dependent phosphohydrolase [Haliangium ochraceum DSM 14365]
Length = 330
Score = 56.8 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 48/302 (15%)
Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219
I +D + +LR A + A + L+ E + E +L ++
Sbjct: 24 IQDDPVAVLRIATAIAENRGQWPADCVTRACREEVALLEQAPGEDVVEEFGLMLLGRDVD 83
Query: 220 NAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK--------IDSLLRFIVLIS 271
+A+ + G+ + +++ + V+E ++R+ L+
Sbjct: 84 HALQWLQRVGVIALLMPELEATVDLVQEGGRRHKDVWEHTKTVVKQAVRRPVVRWAALLH 143
Query: 272 WQDK---------------------KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310
K + M ++ R +R + + I
Sbjct: 144 DIGKVPTRTFTRNGVHFHGHAEVGARMFDKMCRRLPFERSMRKKIRFLIKHHLRSAQYEI 203
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI------------IHW 358
+ + + M A L+ LAL ++T + +L I
Sbjct: 204 GWTESAVRRF-HREMEAHLEDLLALSRADITSKRPGRRRALLHQISELQARIDAVVEKDA 262
Query: 359 KKPLFPLT-GDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED---LHHLLRK-LI 412
+ P P G+ +++ +G+PP K++G+I + + ++D L + L+
Sbjct: 263 QVPPLPSGLGNAIMEHFGLPPSKRIGDIKKVLEAAVARGELEERRDDDYYLAWIADNDLL 322
Query: 413 AS 414
A
Sbjct: 323 AQ 324
>gi|256828447|ref|YP_003157175.1| tRNA adenylyltransferase [Desulfomicrobium baculatum DSM 4028]
gi|256577623|gb|ACU88759.1| tRNA adenylyltransferase [Desulfomicrobium baculatum DSM 4028]
Length = 367
Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 52/332 (15%), Positives = 104/332 (31%), Gaps = 30/332 (9%)
Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87
K +VGGAVRD + D+D D R + + G + +
Sbjct: 2 KIYLVGGAVRDQVRGQEPVDLDFVAIG-GDE--RELRQRVPGLTRVGQ--GIPVFVRGSR 56
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147
+ ++ + D RD TINAL D+ G+++ + L+DL
Sbjct: 57 QYTLSDFS----------------SIEDDLCSRDLTINALARDESGEIVAHPRALSDLHE 100
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLVASIKAKKGLKILSSERIW 206
+ ++ + A+ L D LR +R RF A + + + L +++ER+
Sbjct: 101 KILRPVAPAN--FLADPLRAIRAARFAAAFPDFAVHAQLVEAMRGVTVEALAQVAAERVG 158
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQLSQVIEAEQVFEWKIDSLLR 265
E+ K A P N + + G + ++ ++ V E + R
Sbjct: 159 QEVLKACAASVPGNFLRVLQAGDKLAPWLAEFRDAHAIPAGPPRFHDASVLEHTARVMDR 218
Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
D + L+ + + + + L
Sbjct: 219 CAG-----DGLGVWMALCHDLGKTVTAPELLPHHHGHEAVGPDMAQSLARRLRLPNRHGA 273
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357
+L + +++L ++
Sbjct: 274 AGRLAARWHMAAGCYDGLKPSTRVRLLLELDK 305
>gi|255527294|ref|ZP_05394174.1| Polynucleotide adenylyltransferase region [Clostridium
carboxidivorans P7]
gi|255509032|gb|EET85392.1| Polynucleotide adenylyltransferase region [Clostridium
carboxidivorans P7]
Length = 341
Score = 56.4 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 18/234 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRY 68
+ L + LN+ ++ +VG VR+ L++ +DI ++++ ++
Sbjct: 4 TNEFLKVLKESLNEVGGEAYLVGTFVRERLIDFKSQPSKLDIIYNGDINKLLMSLDNKQF 63
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + R + + + + D +RDF+INA+
Sbjct: 64 SFYSL--------------KENKDSYRYNDRNIVFNITKMKGKSIEEDLSKRDFSINAIS 109
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
I I + I ED +RILR RF YG
Sbjct: 110 LKLIENKIIDPFNGRKAIECRIIQN-VSDTSIEEDPIRILRGIRFCIRYGMHFNLETEKK 168
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ K K + ER+++E+ KL+E N A + N G+ K IF ++E+
Sbjct: 169 IVDLSCKL-KSCNKERLFTELMKLMEVDNNGRAFEVLDNYGVLKNIFPYMEELK 221
>gi|57234925|ref|YP_181081.1| polyA polymerase family protein [Dehalococcoides ethenogenes 195]
gi|57225373|gb|AAW40430.1| polyA polymerase family protein [Dehalococcoides ethenogenes 195]
Length = 493
Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/188 (14%), Positives = 60/188 (31%), Gaps = 19/188 (10%)
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L L I Q D +RF + + + + ++ +
Sbjct: 303 KLAALLHDIAKPQTRSTDPDGRIRFTGH-PLEGSRLSSQILTRLRFSKKEILMVEKMVCY 361
Query: 302 NFNQKTLSIP---EIKKLFYLYGDKVMIAK-------LKIFLALHYNNLTHQDTCFILQV 351
+ ++ K Y Y + A L LA NL + + +
Sbjct: 362 HLRPVQMNPDGQLPSAKAIYRYFRDLGEAAESTLYLSLADHLATDGPNLMVANWQEHVNI 421
Query: 352 LSDIIHWKKPLF-------PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED 403
++ I+ +K +TG D+++ + + PG ++ +L + + QE
Sbjct: 422 VAHILSEQKKQLTRLVPKRLVTGTDLIERFNLRPGPRIKTLLGEITEAQAAGEIKNRQEA 481
Query: 404 LHHLLRKL 411
+ ++L
Sbjct: 482 FKFISQRL 489
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 55/257 (21%), Positives = 87/257 (33%), Gaps = 41/257 (15%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS---KTRYKVI 71
L ++ L ++ + +VGG +R+ ++ DID+ T S K V+
Sbjct: 18 LEDLRRLFSEEASEVYLVGGFLRNLILKKPTADIDLCITGSGQAASAKISGYFKAPQVVL 77
Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131
++I DI+ T D A+ RRDF +NA+ A
Sbjct: 78 DAGND--VFRVILPAFQLDISG----------------TADITANLTRRDFKLNAMAAPL 119
Query: 132 Q---------GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
+ID + GL D+ NR I+ D +R+LR R A G +
Sbjct: 120 SAVHQGSLPVQAIIDPMQGLPDIENRVIRVTSADV--FSADPIRLLRAIRLSAELGF-AL 176
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN--------GGIFKEI 234
D + ++ ERI E+ KLLE P +
Sbjct: 177 DGQTQSLITTHAALISTVAGERIREELLKLLETSQPGIWEKCLELGLLLNIFPELTPCCR 236
Query: 235 FLDVQEISLDQLSQVIE 251
E + D L I+
Sbjct: 237 HPQPYEHTWDVLEHSIK 253
>gi|313632658|gb|EFR99637.1| CCA-adding enzyme [Listeria seeligeri FSL N1-067]
Length = 179
Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/186 (13%), Positives = 58/186 (31%), Gaps = 13/186 (6%)
Query: 224 HMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK 283
+ L + +L + + ++ E I L V S ++ + K
Sbjct: 1 LLKVEMENFLPGLKGKASALKEFASWDWEKRTTENAIWLGLVTTVQPS-----NVTAFLK 55
Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343
+ LP + + + N+K + + Y G V +I + + N
Sbjct: 56 AWKLPNKTIQLVGKTYQYALNKKQV---WSAEELYHAGVDVFSLVNEINVIQYGEN---- 108
Query: 344 DTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQE 402
+ + + K +TG D++K+ G + L ++ I +
Sbjct: 109 QQETLNRAYQALPIHSKKDLAITGADLLKWSNEQAGPWLKETLEKIERAVILEEIDNEKN 168
Query: 403 DLHHLL 408
+ L
Sbjct: 169 QIRRWL 174
>gi|257464917|ref|ZP_05629288.1| polyA polymerase [Actinobacillus minor 202]
gi|257450577|gb|EEV24620.1| polyA polymerase [Actinobacillus minor 202]
Length = 379
Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/371 (14%), Positives = 123/371 (33%), Gaps = 37/371 (9%)
Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKV 107
+ +IF + + I+ ++ +++ T R+ G +
Sbjct: 1 MQKIFGRQ---CRLVGRRFRLAHIVFGREIYEVATFRAGHENHTNDKISKISDAGMLLRD 57
Query: 108 VFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166
+ D+ RRDF++NA Y D + + D+ GL DL ++ +G+ R ED +R
Sbjct: 58 NVYGTMREDAERRDFSVNAFYYDPRHNLIYDFFNGLEDLNAGKLRLLGNPVQRYQEDPVR 117
Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226
+LR RF A +D + LK++ + R++ E KLL++ L +
Sbjct: 118 MLRAIRFMAKLDMF-LDRATADPIKEMAPLLKMIPAARLFDESLKLLQSGAGLKTYQLLR 176
Query: 227 NGGIFKEIFLDVQEISLDQLSQVIEAE--QVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284
+F+ +F + ++ E + + + + + ++ +
Sbjct: 177 EYALFEPLFPVLMPFFTEKQDSNAERMITKALTSTDERIRDKLPVNPAFLFAALFWYPLR 236
Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344
+ ++ + + E K + + + L T +
Sbjct: 237 EKIDELKNEGGLNNHDSMMLAANDILDESCKSVAXHRRHTGVIREIWALQFQMTRRTGKR 296
Query: 345 TCFILQVLSDIIHWKKPLF--PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS-- 400
L+ + + + G D+V+ W F
Sbjct: 297 PLQTLEAQKFRAGFDLLVMRAEIEGGDLVELS---------------AWWHEFQFSNDQQ 341
Query: 401 QEDLHHLLRKL 411
+ ++ ++KL
Sbjct: 342 RAEMLQAVKKL 352
>gi|73748185|ref|YP_307424.1| polyA polymerase family protein [Dehalococcoides sp. CBDB1]
gi|73659901|emb|CAI82508.1| polyA polymerase family protein [Dehalococcoides sp. CBDB1]
Length = 498
Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/259 (18%), Positives = 85/259 (32%), Gaps = 37/259 (14%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYK 69
+ L ++ LL+ ++ +VGG +R+ ++ DID+ S+ +
Sbjct: 14 TSALLEDLHRLLSAEGTETYLVGGFLRNLVLKKPTADIDLCVIGNGFSAASKISRHFKAT 73
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I +++ DI+ T D A+ RRDF +NA+ A
Sbjct: 74 QIVLDADNDVTRVMLPGFQLDISG----------------TPDISANLARRDFNLNAMAA 117
Query: 130 DQQGKVI---------DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
D + GL D+ NR I+ D +R++R R A G
Sbjct: 118 PLSALNHGNLQIHAIVDPMQGLRDIENRVIRVTS--SEVFRADPIRLIRAIRLSAELGF- 174
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINK---LLEAKNPLNAIVH-----MYNGGIFK 232
+D + ++ ERI E+ K + + ++
Sbjct: 175 ELDEQTQSLITTHAGLISTVAGERIREELLKLLETSQTGIWEKCLELGLLLSIFTELDPC 234
Query: 233 EIFLDVQEISLDQLSQVIE 251
E + D L I+
Sbjct: 235 YRHPQPYEHTWDVLEHSIK 253
Score = 53.3 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/188 (14%), Positives = 60/188 (31%), Gaps = 19/188 (10%)
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L L I Q D +RF + + + + ++ +
Sbjct: 303 KLAALLHDIAKPQTRSTDPDGRVRFTGH-PLEGSRITSEILTRLRFSKKEISLVEKMVCY 361
Query: 302 NFNQKTLSIP---EIKKLFYLYGDKVMIAK-------LKIFLALHYNNLTHQDTCFILQV 351
+ ++ K Y Y + A L LA NL + + +
Sbjct: 362 HLRPVQMNPDGQLPSSKAIYRYFRDLSEAATATLYLSLADHLATDGPNLMVANWQEHVNI 421
Query: 352 LSDIIHWKK-------PLFPLTGDDVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQED 403
++ I+ +K P +TG D+++ + PG ++ +L + + +E
Sbjct: 422 VAHILSEQKRQLTRLTPKRLITGTDLIERFALRPGPRIKILLGEIAEAQAAGEIKTRREA 481
Query: 404 LHHLLRKL 411
+ ++L
Sbjct: 482 FKFISQRL 489
>gi|289432235|ref|YP_003462108.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dehalococcoides sp. GT]
gi|288945955|gb|ADC73652.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dehalococcoides sp. GT]
Length = 505
Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/259 (18%), Positives = 88/259 (33%), Gaps = 37/259 (14%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYK 69
+ L ++ LL+ ++ +VGG +R+ ++ DID+ S+ +
Sbjct: 21 TSALLEDLHRLLSAEGTETYLVGGFLRNLVLKKPTADIDLCVIGNGFSAASKISRHFKAT 80
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I +++ DI+ T D A+ RRDF +NA+ A
Sbjct: 81 QIVLDADNDVTRVMLPGFQLDISG----------------TPDISANLARRDFNLNAMAA 124
Query: 130 DQQ---------GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
++D + GL D++NR I+ D +R++R R A G
Sbjct: 125 PLSALNHGNLQIHAIVDPMQGLRDIKNRVIRVTS--SEVFRADPIRLIRAIRLSAELGF- 181
Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINK---LLEAKNPLNAIVH-----MYNGGIFK 232
+D + ++ ERI E+ K + + ++
Sbjct: 182 ELDEQTQSLITTHAGLISTVAGERIREELLKLLETSQTGIWEKCLELGLLLSIFTELDPC 241
Query: 233 EIFLDVQEISLDQLSQVIE 251
E + D L I+
Sbjct: 242 YRHPQPYEHTWDVLEHSIK 260
Score = 52.9 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/188 (14%), Positives = 60/188 (31%), Gaps = 19/188 (10%)
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L L I Q D +RF + + + + ++ +
Sbjct: 310 KLAALLHDIAKPQTRSTDPDGRVRFTGH-PLEGSRITSEILTRLRFSKKEISLVEKMVCY 368
Query: 302 NFNQKTLSIP---EIKKLFYLYGDKVMIAK-------LKIFLALHYNNLTHQDTCFILQV 351
+ ++ K Y Y + A L LA NL + + +
Sbjct: 369 HLRPVQMNPDGQLPSSKAIYRYFRDLSEAATATLYLSLADHLATDGPNLMVANWQEHVNI 428
Query: 352 LSDIIHWKK-------PLFPLTGDDVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQED 403
++ I+ +K P +TG D+++ + PG ++ +L + + +E
Sbjct: 429 VAHILSEQKRQLTRLTPKRLITGTDLIERFALRPGPRIKILLGEIAEAQAAGEIKTRREA 488
Query: 404 LHHLLRKL 411
+ ++L
Sbjct: 489 FKFISQRL 496
>gi|84394686|ref|ZP_00993368.1| hypothetical protein V12B01_26369 [Vibrio splendidus 12B01]
gi|84374692|gb|EAP91657.1| hypothetical protein V12B01_26369 [Vibrio splendidus 12B01]
Length = 56
Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 16 INILSLL-NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI 54
+ I L + +VGGAVRD L+N+ D D
Sbjct: 17 LQIYDSLPKDNGLQRYLVGGAVRDKLLNIDSYDRDWVVVG 56
>gi|167947375|ref|ZP_02534449.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase [Endoriftia
persephone 'Hot96_1+Hot96_2']
Length = 371
Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 8/206 (3%)
Query: 38 DSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD 97
D L+ L V + D D + + +S + + R T ++
Sbjct: 2 DQLLELPVHERDWVVVG-GDEARMLAGRFSVAPTVSSRCSSIPRTVVRSSRCARTETKTG 60
Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAH 157
G V +AD RRD TINA+ DQQG++ID + G +DL N ++ I
Sbjct: 61 AGYKGFAVHVGPDVTLEADLRRRDLTINAMALDQQGRLIDPLHGRDDLENGRLRHI---S 117
Query: 158 HRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI----LSSERIWSEINKLL 213
+ED +R+LR RF G + + L ERIW E+ K L
Sbjct: 118 DAFIEDPVRLLRLARFADKLGCWGFRVAHSTHRLLQQMAASDDLLSLKPERIWREMEKSL 177
Query: 214 EAKNPLNAIVHMYNGGIFKEIFLDVQ 239
P + G + + ++
Sbjct: 178 AELQPWRFFEVLQRCGALQRLLPELD 203
>gi|94676619|ref|YP_588681.1| poly(A) polymerase [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
gi|94219769|gb|ABF13928.1| poly(A) polymerase [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
Length = 349
Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 56/311 (18%), Positives = 106/311 (34%), Gaps = 24/311 (7%)
Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL----------------ITDG 102
+ ++F R + +I + ++ TLR +G
Sbjct: 1 MRKLFRNCRL----VGRRFRLAHVIFGAEIIEVATLRGHHKMLNYQYSKVSTTSFKYNNG 56
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRIL 161
+ + D+ RRDF++N LY V DY GGL DLR+ I+ IGD R
Sbjct: 57 MLLRDNIFGSIEEDAQRRDFSVNCLYYSIEDFTVRDYTGGLIDLRDGKIRMIGDPETRYR 116
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED +R+LR RF A I + ++ L + R + E KLL
Sbjct: 117 EDPVRMLRAVRFAAKLNMI-ISEETAKPILQLATLLDNIPPARRFDEALKLLHTGYGELT 175
Query: 222 IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI--DSLLRFIVLISWQDKKSIL 279
+ + K +F + + + + +E + S + ++ ++L
Sbjct: 176 YRLLCKYQLLKPLFPLISKHVTEHGNSYMENMIILVLTQTDRSFHKSSIVNPALLFAAML 235
Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339
+ ++ I + T + E K L + + L L +
Sbjct: 236 WYPLLDYAQKLMQEKPIFYLEAFVLSMTNILDEQCKTLALPKKITTLMRDIWQLQLRLSR 295
Query: 340 LTHQDTCFILQ 350
++ +++
Sbjct: 296 YPNKKARKLIE 306
>gi|315058243|gb|ADT72572.1| tRNA nucleotidyltransferase [Campylobacter jejuni subsp. jejuni S3]
Length = 335
Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 57/379 (15%), Positives = 113/379 (29%), Gaps = 48/379 (12%)
Query: 39 SLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD 97
+ L + D DI I P +I K + S+ + + K +D+ R++
Sbjct: 1 MFLGLKICDYDIELYDIKPKDFEKIMQKLGAQGF--GKSF----FVYKFKNYDLALARTE 54
Query: 98 LITDGRYAKV--VFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIG 154
+ D K + RRDFTIN++ + + +D+ GGL DL ++
Sbjct: 55 NKISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLEAGFLR--H 112
Query: 155 DAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214
ED LR+LR F + + K + L + K
Sbjct: 113 IDKQSFQEDSLRVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELYKFFKSPR 172
Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274
+ + + + + ++ + F L + +
Sbjct: 173 LDVGYRYLQELGLEKQVFGFESVFKSL---EFQNLLRQSREFVKSDALFLYLYLNFFNLE 229
Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
K +++ + + N F +S E+ K+ + K +
Sbjct: 230 KDIFFKRT-------KLKKEYLKYANQAFYLDDISDFELAKIAFEMPLKEWLGLWSKKRI 282
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
L + F ++L D + G GK +G L ++
Sbjct: 283 EQAKRLGLYENKFESKIL--------------AKDFINAGF-CGKILGLKLQEARE---- 323
Query: 395 SSFQLSQEDLHHLLRKLIA 413
+L ++ L
Sbjct: 324 -------NELKEYIKGLAK 335
>gi|147668960|ref|YP_001213778.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dehalococcoides sp. BAV1]
gi|146269908|gb|ABQ16900.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Dehalococcoides sp. BAV1]
Length = 498
Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/255 (18%), Positives = 84/255 (32%), Gaps = 37/255 (14%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPT 73
L ++ LL+ ++ +VGG +R+ ++ DID+ S+ + I
Sbjct: 18 LEDLHRLLSAEGTETYLVGGFLRNLVLKKPTADIDLCVIGNGFSAASKISRHFKATQIVL 77
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133
+++ DI+ T D A+ RRDF +NA+ A
Sbjct: 78 DADNDVTRVMLPGFQLDISG----------------TPDISANLARRDFNLNAMAAPLSA 121
Query: 134 KVI---------DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
D + GL D+ NR I+ D +R++R R A G +D
Sbjct: 122 LNHGNLQIHAIVDPMQGLRDIENRVIRVTS--SEVFRADPIRLIRAIRLSAELGF-ELDE 178
Query: 185 DGLVASIKAKKGLKILSSERIWSEINK---LLEAKNPLNAIVH-----MYNGGIFKEIFL 236
+ ++ ERI E+ K + + ++
Sbjct: 179 QTQSLITTHAGLISTVAGERIREELLKLLETSQTGIWEKCLELGLLLSIFTELDPCYRHP 238
Query: 237 DVQEISLDQLSQVIE 251
E + D L I+
Sbjct: 239 QPYEHTWDVLEHSIK 253
Score = 53.3 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/188 (14%), Positives = 60/188 (31%), Gaps = 19/188 (10%)
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L L I Q D +RF + + + + ++ +
Sbjct: 303 KLAALLHDIAKPQTRSTDPDGRVRFTGH-PLEGSRITSEILTRLRFSKKEISLVEKMVCY 361
Query: 302 NFNQKTLSIP---EIKKLFYLYGDKVMIAK-------LKIFLALHYNNLTHQDTCFILQV 351
+ ++ K Y Y + A L LA NL + + +
Sbjct: 362 HLRPVQMNPDGQLPSSKAIYRYFRDLSEAATATLYLSLADHLATDGPNLMVANWQEHVNI 421
Query: 352 LSDIIHWKK-------PLFPLTGDDVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQED 403
++ I+ +K P +TG D+++ + PG ++ +L + + +E
Sbjct: 422 VAHILSEQKRQLTRLTPKRLITGTDLIERFALRPGPRIKILLGEIAEAQAAGEIKTRREA 481
Query: 404 LHHLLRKL 411
+ ++L
Sbjct: 482 FKFISQRL 489
>gi|296188349|ref|ZP_06856741.1| HD domain protein [Clostridium carboxidivorans P7]
gi|296047475|gb|EFG86917.1| HD domain protein [Clostridium carboxidivorans P7]
Length = 405
Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 18/234 (7%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRY 68
+ L + LN+ ++ +VG VR+ L++ +DI ++++ ++
Sbjct: 4 TNEFLKVLKESLNEVGGEAYLVGTFVRERLIDFKSQPSKLDIIYNGDINKLLMSLDNKQF 63
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128
+ + R + + + + D +RDF+INA+
Sbjct: 64 SFYSL--------------KENKDSYRYNDRNIVFNITKMKGKSIEEDLSKRDFSINAIS 109
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
I I + I ED +RILR RF YG
Sbjct: 110 LKLIENKIIDPFNGRKAIECRIIQN-VSDTSIEEDPIRILRGIRFCIRYGMHFNLETEKK 168
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
+ K K + ER+++E+ KL+E N A + N G+ K IF ++E+
Sbjct: 169 IVDLSCKL-KSCNKERLFTELMKLMEVDNNGRAFEVLDNYGVLKNIFPYMEELK 221
>gi|301167315|emb|CBW26897.1| putative poly(A) polymerase [Bacteriovorax marinus SJ]
Length = 396
Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 19/172 (11%)
Query: 20 SLLNKGEDKSCIVGGAVRDSLM-NLSVQDIDIAT-------TIL-PDRVMRIFSKTR-YK 69
LLN K ++GGAVRD ++ + D+D + P + +F + +
Sbjct: 18 KLLNDRGFKLTLIGGAVRDFILYSKLSDDLDFEIRSQKFVDDAIWPSILKDLFKEMKPLG 77
Query: 70 VIPTSISYGTIKIICRKKYFDITTLR--------SDLITDGRYAKVVFTRDWKADSLRRD 121
V S+ + ++ + F+I++ R D A+ ++ RRD
Sbjct: 78 VAVESLKFNIYRVTFKGIEFEISSPRKEVYEPNIGDYGHSDFRAEFSSNFTYEESFARRD 137
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173
FT+NA+ + + + + + + +D +R+LR RF
Sbjct: 138 FTLNAIGVE-FTEEFSLIDPYGGVEAAQKRELDFITDDFFKDPVRLLRTLRF 188
>gi|188586965|ref|YP_001918510.1| Polynucleotide adenylyltransferase region [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179351652|gb|ACB85922.1| Polynucleotide adenylyltransferase region [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 460
Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 56/438 (12%), Positives = 123/438 (28%), Gaps = 75/438 (17%)
Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86
K +VGG++RD L D+D+ V+ + + + I+ +
Sbjct: 22 GKGFLVGGSLRDLLSGKIPVDLDLVFNREDLEVIVENLQLSQRRSDKGDKF---IILDQG 78
Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146
+ + RD + D RDFTINA+ ++ +
Sbjct: 79 RQIFRFIPAEPETKIFVDLMPLKGRDLQEDLGCRDFTINAMALSLDKMIVKPNPKQGSVD 138
Query: 147 NRTIKFIGDAHHR-----------------------------ILEDYLRILRFFRFFAHY 177
+ + + D LR LR FRFF
Sbjct: 139 EGSELLFKIPNSTKKMEQLIIDPFQGKLDLKHKVVRPVSQRIMENDPLRCLRAFRFF--V 196
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
++ + L + + + + I ++A N+ + + L
Sbjct: 197 LGYDLSREILNLIEEGEYSWSDIYGQIAQERIYHEMKAIWASNSSLQRQAQLLQLMQVLG 256
Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW--------QDKKSILSMAKKFSLPR 289
E + + +I + E +DS + + ++ +LP+
Sbjct: 257 FDEHINFRQNNLITLSSILEMLLDSWSWSKTYPQINRFELAFLLWDLAGFNFYEELTLPK 316
Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFY-----LYGDKVMIAKLKIFLALHYN------ 338
++ + + FY + D + + L++
Sbjct: 317 SLKSLQEGVLRGRQQIPVNVCSKCRYRFYARELVKFRDSTWLKLESLGWLLNFARTQVQE 376
Query: 339 -------------------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPG 378
L+ + I+ +L I +K+ G+ ++++ G PG
Sbjct: 377 FNSSSNVEFNNSRDMEGVIKLSLKKEAQIIPLL--ITRYKQIKEKYDGNWLLEHSGKDPG 434
Query: 379 KKVGNILVHCKQEWINSS 396
+ L + +
Sbjct: 435 PWLKQALQDLHYQKLIGD 452
>gi|220903724|ref|YP_002479036.1| metal dependent phosphohydrolase [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219868023|gb|ACL48358.1| metal dependent phosphohydrolase [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 443
Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 51/407 (12%), Positives = 114/407 (28%), Gaps = 46/407 (11%)
Query: 48 IDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV 107
+DIA D + ++F K + + + L + +
Sbjct: 42 VDIACEPDMDTLFKLFPKAQAAP----EKRALAIMEENGVTYRFYPLEVAAAGHPELSLI 97
Query: 108 VFTRDWKADSLRRD-FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166
T + + D G D+++ I G + DYL
Sbjct: 98 KITPTMIDLMSHEERLKLRLTGFSTPEYTGDVYDGFEDIKSGAICLTGLPDETLRHDYLL 157
Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226
+R RF A++ I+ + +A ++A + + + + A+N + ++
Sbjct: 158 AVRALRFAANFD-LPIEPNTWLAIVRASSRVLDYVPATDIMDEWRKVAAENMYRFVRLLF 216
Query: 227 NGGIFKEIFLDVQEISLDQLSQVIE--AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284
+ I + + +V +S + E E VFE ++ + + D ++M
Sbjct: 217 DAHILQGLIPEVAALSCLTQMRNKEGDTENVFEHTLECMKCYPEEDFHYDWLGTMAMLFH 276
Query: 285 ----------------------------------FSLPREIRYFLISFFNCNFNQKTLSI 310
+E L + +
Sbjct: 277 DVGKLYTGEYYDGQWTYYQHHRVGAKVTRKILRRLHFAQEDIDLLCHLVRNHMRFHFMMT 336
Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII-HWKKPLFPLTGDD 369
+ F D L + ++ L + L G++
Sbjct: 337 DRGIRRFKAL-DDYPRLIAMARADLKARDGIPTSFNHNMKYLDRAETPEQMLEPLLNGNE 395
Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
++ + + PG +VG I + I + + +R+ S
Sbjct: 396 IMSETKLSPGPQVGIIRDALLKAQIAGEVTDLESAV-SFVREYARKS 441
>gi|302873034|ref|YP_003841667.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium cellulovorans 743B]
gi|307688827|ref|ZP_07631273.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium cellulovorans 743B]
gi|302575891|gb|ADL49903.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Clostridium cellulovorans 743B]
Length = 402
Score = 54.1 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 68/233 (29%), Gaps = 19/233 (8%)
Query: 13 SDLINILSL-LNKGEDKSCIVGGAVRDSLMN--LSVQDIDIATTILPDRVMRIFSKTRYK 69
+ I +L + EDK IVG VRD L + + +DI K
Sbjct: 2 KETIQLLKSYMKNKEDKIYIVGEYVRDKLKDSSKEPKTLDIVVDGN--------EACLIK 53
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
+ K + ++ Y ++ + DFT+NA+
Sbjct: 54 YLEAHE------FKFDKLKDKQRGHKKTKESEELYIWTNKGQNIEEYLQGVDFTVNAIAL 107
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
D + + + I + +RI+ + G +
Sbjct: 108 DIKDNKMIDPYNGRRDIKSKLVNEVMQE-SISKAPIRIITAIKLSLENGMH-LGGFTEEH 165
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
K + + ++ + L NAI + I + IF ++E
Sbjct: 166 IRLYKDKIDESDKDELYEALLSLFSKDLYGNAIEFLDRYEILENIFPYIKEAK 218
>gi|156564084|ref|YP_001429831.1| hypothetical protein 0305phi8-36p102R [Bacillus phage 0305phi8-36]
gi|156564225|ref|YP_001429592.1| hypothetical protein 0305phi8-36p102 [Bacillus phage 0305phi8-36]
gi|154622781|gb|ABS83661.1| hypothetical protein 0305phi8-36p102R [Bacillus phage 0305phi8-36]
gi|154622922|gb|ABS83802.1| hypothetical protein 0305phi8-36p102 [Bacillus phage 0305phi8-36]
Length = 550
Score = 54.1 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/373 (10%), Positives = 101/373 (27%), Gaps = 31/373 (8%)
Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDI---ATTILPDRVMRIFSKTRY 68
+ + + ++ K I GG V D+LM DID+ + V+ +
Sbjct: 4 STGIKEVYKVVK--GFKGIIAGGCVLDALMGKEPNDIDVFVSTSDACKSEVLYHVLSKGF 61
Query: 69 KVIPTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDF 122
+I + + + + I R ++ D ++ DF
Sbjct: 62 MFSEVIRERPSITVEDDDESVRVIEISKIVSVLKGTIGKYRVEIMMVNTDDIRQYVQEDF 121
Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182
IN GKV+ + R I+ + + +R YG K
Sbjct: 122 DINITACYYDGKVVITEPAEIGFKQRIIRPLKF-------EPTGYIRASLCAKKYGFKLG 174
Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
L + + + + + + +
Sbjct: 175 HEYKLSRDYCEYLYEQGVLQNYVTKKYAYVDREMTFTGKYDIGNVMMVDMYYLARLDNNP 234
Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302
++ +++ + LL I + + + + +R + + +
Sbjct: 235 RVLINHMMKIANHKQVAAHPLLVDSFDIELINHSHEMFHSALRDVSSALRVDYENPLHKH 294
Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362
++ +L L ++ +++ ++ I +
Sbjct: 295 ------TVIFQMRLLRLQRLDEDDFMENKVQLDDGRKIS------VVKYINRIEKEFPQV 342
Query: 363 FPLTGDDV-VKYG 374
+ GDD+ + G
Sbjct: 343 MEILGDDIRIPLG 355
>gi|224000135|ref|XP_002289740.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974948|gb|EED93277.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 218
Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 32/146 (21%)
Query: 29 SCIVGGAVRDSLM-----------------NLSVQDIDIATTIL-----PDRVMRIFSKT 66
+ GG VRD ++ DIDIA D + + S
Sbjct: 5 LRVAGGWVRDKILASKEFKQHIKGVDLYYEGRGSIDIDIALDDKLGREFADELNQWLSDH 64
Query: 67 RYKVIPTS---------ISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKAD 116
+ T + + D LR + +D R ++ + D
Sbjct: 65 GRETHSVGVVLKNPEKSKHLETATMRINNYWIDFVNLRAEEYTSDSRIPDLMRIGTAEED 124
Query: 117 SLRRDFTINALYADQQGKVIDYVGGL 142
+ RRD TIN+L+ + V++ + G
Sbjct: 125 AFRRDLTINSLFYNINDGVVEDMTGR 150
>gi|170085391|ref|XP_001873919.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651471|gb|EDR15711.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 514
Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 45/300 (15%), Positives = 90/300 (30%), Gaps = 24/300 (8%)
Query: 40 LMNLSVQDIDIATT-----ILPDRVMRIFSKTRYKVIPTSI--------SY-GTIKIICR 85
L+ DIDIA + + + + S + T
Sbjct: 4 LLGSQCNDIDIALSNIMGVAFAEHLAAFAQAKGVRAGTISKIAVNPDQSKHLETATFKIF 63
Query: 86 KKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL-- 142
D+ LR + R V D+ RRD TIN+++ + +++
Sbjct: 64 GLDIDLVNLRSEEYSETSRIPTEVLFGTPLEDARRRDITINSMFYNVHNHMVEDFTSKGL 123
Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKGLKIL 200
+DL I+ +D LR+LR RF + +G + + S + +
Sbjct: 124 DDLHEGVIRTPLPPKETFRDDPLRVLRCIRFASRFGFELVADIKQAAQDSEIQNALVTKV 183
Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260
+ ERI EI+K+++ + F + +L + +
Sbjct: 184 ARERIGDEISKMMKGIVYSSFFE-----NDFDYTHAGQDPLHSIRLIHELALYPSIFSAL 238
Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320
+ + + + +S A + + + P + YL
Sbjct: 239 PPEVSSTLSSAPSGSERAVSAAAILNTLLLPEQPSFPKVHHRLLAALQTDPSCRPRLYLA 298
>gi|326518838|dbj|BAJ92580.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 340
Score = 53.7 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 77/232 (33%), Gaps = 16/232 (6%)
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGR---------YAKVVFTRDWKADSL 118
+ + + + ++++ + + + WK +
Sbjct: 7 GAAVIVGRRFPIVHVHDNNSIVEVSSFNTYVRGSSGNQMPASKSPHCSKNDYLRWK-NCQ 65
Query: 119 RRDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177
RDFTIN L K+ DY+GG+ D++ ++ + A ED RILR R A
Sbjct: 66 GRDFTINGLMFNPYSEKIYDYLGGIEDIKKAKVRTVIPAATSFHEDCARILRAIRIAARL 125
Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL- 236
G + + + L R+ E+N +L + ++ ++ G+ + +
Sbjct: 126 GF-SFPKETAYYVRNLACSVARLDKGRLLMEVNYMLAYGSAEASLRLLWRFGLLEHLLPF 184
Query: 237 ---DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ V K+DS L SIL+ +
Sbjct: 185 QAAYFSSTLFKRKDNGTNMLLVLFSKLDSFLAPNRPCHNSLWISILAFHEAL 236
>gi|158523095|ref|YP_001530965.1| hypothetical protein Dole_3085 [Desulfococcus oleovorans Hxd3]
gi|158511921|gb|ABW68888.1| hypothetical protein Dole_3085 [Desulfococcus oleovorans Hxd3]
Length = 312
Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/252 (13%), Positives = 67/252 (26%), Gaps = 11/252 (4%)
Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219
E L F + AH + + + L
Sbjct: 67 YFELPNTTLNFLQERAHKLGVASEESIQRHMKCIHDFRTCCQHNLKQESKEDIAKEARCL 126
Query: 220 NAIV-HMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI 278
I H+ + + QL + E I S ++ + +
Sbjct: 127 EWIRFHINDFSNTSIWIPPSESEIWSQLLHSLFTETYNFLNILSKTTKEIVKDVLAQDTF 186
Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338
+ R ++F ++ + + K L
Sbjct: 187 EILL-----SRIEKFFHAHEWDRIVRDVINDLGMEYLDISNLRSRHFEKWNKQLSILSSR 241
Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSF 397
++ I++ II P+TG D++ IPPG ++ L ++ + S
Sbjct: 242 VNIQEEARKIVEH--TIIKDSNIPLPITGRDIIAVLNIPPGPEIRAKLKEAEELFFKSPC 299
Query: 398 QLSQEDLHHLLR 409
+E+L L+
Sbjct: 300 --GREELLAQLK 309
>gi|87304069|ref|ZP_01086652.1| poly A polymerase family protein [Synechococcus sp. WH 5701]
gi|87281498|gb|EAQ73543.1| poly A polymerase family protein [Synechococcus sp. WH 5701]
Length = 357
Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 49/341 (14%), Positives = 108/341 (31%), Gaps = 36/341 (10%)
Query: 31 IVGGAVRDSLMNLSV--QDIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKIICRKK 87
+VGGAVRD+ + D+D+ R +KT K + +++
Sbjct: 48 LVGGAVRDAFLGRHNPHPDLDLVVRSDALRHSARLAKTFGGKHVVLDEQRDIARLVINGW 107
Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG--KVIDYVGGLNDL 145
D+ + D RRD+++NAL Q + D GGL DL
Sbjct: 108 TIDVA--------------RQEGDGLEDDLWRRDYSLNALALPLQPLAPLCDPTGGLEDL 153
Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205
++ ++ + + + D L F +D+ + ++ L + + ERI
Sbjct: 154 KHGRLRAVREQNL---LDDPLRLLRGLRFLAEIPLVLDAQTGEWIQRHRQALVVSAPERI 210
Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265
+E+ +L++ + A+ + + + + + + E + L +
Sbjct: 211 LAELQRLVKGPHADQALHLLEQWPLLQPWATTTPTAASYDTTLLNAEEATIALPLARLTK 270
Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325
I K+ + ++ + K ++ ++
Sbjct: 271 LIS----------DDGLKRLKASKMLQQRCARLRHWGLQAKQQPEALPEQE----RLQLH 316
Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
+ AL + ++ + P PL
Sbjct: 317 LELEGDLAALILDLPKELQPQWLKRWRDPNDPLFHPTMPLD 357
>gi|229090599|ref|ZP_04221833.1| CCA-adding enzyme [Bacillus cereus Rock3-42]
gi|228692742|gb|EEL46467.1| CCA-adding enzyme [Bacillus cereus Rock3-42]
Length = 88
Score = 52.9 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 9/77 (11%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWI 393
+ H + + + + +TG+D++ + PG V ++ ++ +
Sbjct: 8 AMIESYDHTSVERVQTLFQALPIKSRQEMDVTGNDLLNWASKKPGPWVAEMIQKIEEAIV 67
Query: 394 NSSFQLSQEDLHHLLRK 410
+ +E + L++
Sbjct: 68 QGNVVNEKECIREWLQE 84
>gi|296411476|ref|XP_002835457.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629240|emb|CAZ79614.1| unnamed protein product [Tuber melanosporum]
Length = 678
Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 29 SCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSIS-----YGTIKI 82
VGG VRD L+ L DID+ + ++ + P S +G +K+
Sbjct: 41 LRFVGGWVRDRLLGLQSVDIDVGIDNMTGYEFATRLDRS--RATPKGPSIWRLLFGRLKV 98
Query: 83 ICRKKY 88
K
Sbjct: 99 RHNKTP 104
>gi|313618192|gb|EFR90274.1| CCA-adding enzyme [Listeria innocua FSL S4-378]
Length = 181
Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 3/122 (2%)
Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCF 347
++ + + K K +L + + L NN+ Q
Sbjct: 55 FLKAWKLPNKTVQLVNKAYEDALNMKETWLTEELYHAQEAVFLLVNEINNIRGQMDKEDE 114
Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
+ + + K +TG D++K+ G G V L +++ + + +
Sbjct: 115 LKKAYELLPIHSKKDLTITGADLLKWTGENAGPWVKETLDKVERQVLLGKINNEKNQIKR 174
Query: 407 LL 408
L
Sbjct: 175 WL 176
>gi|330880374|gb|EGH14523.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. race
4]
Length = 69
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLM 41
+NI+ L ++ +VGG VRD ++
Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMML 69
>gi|255023836|ref|ZP_05295822.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL J1-208]
Length = 121
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+K+ Y G V ++ + N H+ + Q + K +TG D
Sbjct: 21 ETWLKEELYHAGKAVFSLVNELNVIRGQENNQHK----LSQAYEALPIHSKKDLAITGAD 76
Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
++ + G G V L + +++ + + L
Sbjct: 77 LLNWSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWL 116
>gi|331270636|ref|YP_004397128.1| polyA polymerase family protein [Clostridium botulinum BKT015925]
gi|329127186|gb|AEB77131.1| polyA polymerase family protein [Clostridium botulinum BKT015925]
Length = 456
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 81/230 (35%), Gaps = 18/230 (7%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIP 72
+ +I ++ E + I+G +R+ L+N+ + +DI + + K Y VI
Sbjct: 5 IEHIKDIIKNIEGSAYIIGEYIRNKLINIKEEFKGLDIIYDGDIELFITELKKKNYNVII 64
Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ + I K ++ L++ + DFTIN++
Sbjct: 65 LNKEKHIYRTIIDNKILNVELLKAK--------------SIEEYLSDLDFTINSIALKLV 110
Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192
I + I ED +RIL ++ YG
Sbjct: 111 DNKIIDPFNGRYHLKAKLIHPISKE-SIKEDPIRILTAYKISIKYGMH-FSKICEEQIKN 168
Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242
K +K S ERI++E ++++ A + G+ +E+ V E+
Sbjct: 169 NKYHIKNSSKERIFNEFIQIIKFDKYGRAFEELDVHGVLQELLPYVNELK 218
>gi|270307707|ref|YP_003329765.1| polymerase [Dehalococcoides sp. VS]
gi|270153599|gb|ACZ61437.1| polymerase [Dehalococcoides sp. VS]
Length = 501
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/188 (14%), Positives = 61/188 (32%), Gaps = 19/188 (10%)
Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301
L L I Q D +RF + + + + ++ +
Sbjct: 306 KLAALLHDIAKPQTRSTDPDGRIRFTGH-PLEGSRLSSQILTRLRFSKKEILLVEKMVCY 364
Query: 302 NFNQKTLSIP---EIKKLFYLYGDKVMIAK-------LKIFLALHYNNLTHQDTCFILQV 351
+ ++ K Y Y + A L LA NL + + +
Sbjct: 365 HLRPVQMNPDGQLPSPKAVYRYFRDLSEAAAATLYLSLADHLATDGPNLMVANWQEHVNI 424
Query: 352 LSDIIHWKK-------PLFPLTGDDVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQED 403
++ I+ +K P +TG D++++ + PG ++ +L + + QE
Sbjct: 425 VAHILSEQKKQQTRLTPKRLVTGTDLIEHFSLRPGPRIRTLLGEIAEAQAAGEIKNRQEA 484
Query: 404 LHHLLRKL 411
+ ++L
Sbjct: 485 FKFISQRL 492
Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 52/255 (20%), Positives = 86/255 (33%), Gaps = 37/255 (14%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV-MRIFSKTRYKVIPT 73
L ++ L ++ + +VGG +R+ ++ DID+ T +I + +
Sbjct: 21 LEDLRRLFSEEASEVYLVGGFLRNLVLKKPTADIDLCITGSGQAASAKISGYFKATQVVL 80
Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ- 132
++I DI+ T D A+ RRDF +NA+ A
Sbjct: 81 DAENDVFRVILPAFQLDISG----------------TADIAANLTRRDFKLNAMAAPLSA 124
Query: 133 --------GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
+ID GL D+ NR I+ D +R+LR R A G +D
Sbjct: 125 VHQGSLPVQAIIDPTQGLPDIENRVIRVTSADV--FSADPIRLLRAIRLSAELGF-ALDW 181
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN--------GGIFKEIFL 236
+ ++ ER+ E+ KLLE P +
Sbjct: 182 QTQSLITAHAALISTVAGERVREELLKLLETSQPGIWEKCLELGLLLNIFPELTPCYRHP 241
Query: 237 DVQEISLDQLSQVIE 251
E + D L I+
Sbjct: 242 QPYEHTWDVLEHSIK 256
>gi|162454239|ref|YP_001616606.1| putative polynucleotide polymerase [Sorangium cellulosum 'So ce
56']
gi|161164821|emb|CAN96126.1| putative polynucleotide polymerase [Sorangium cellulosum 'So ce
56']
Length = 336
Score = 51.0 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/164 (10%), Positives = 46/164 (28%), Gaps = 15/164 (9%)
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313
+ + + + I F+ ++ + +
Sbjct: 158 RSISPTGEVHFFGHAEVGARMFDKIDRRLPLFTKEEALKNSIRFLILHHLRASQYDASWT 217
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD---- 369
+ ++ LK L L ++T + + L I + + + +D
Sbjct: 218 DSAVRRFAKEMG-GCLKDVLDLSRADITTKRPEKKRKGLKQISELAERVLQVQAEDAVVP 276
Query: 370 ---------VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQED 403
++ +G+PP +++G I ++ QE
Sbjct: 277 PLPSGIGDAIMHAFGLPPSRRIGEIKRALEEAVEAGEVASHQEA 320
>gi|190347325|gb|EDK39574.2| hypothetical protein PGUG_03672 [Meyerozyma guilliermondii ATCC
6260]
Length = 452
Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 9/85 (10%), Positives = 27/85 (31%), Gaps = 7/85 (8%)
Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWK-----KPLFPLTGDDV-VKYGIPPGKKVGNI 384
+ LA + +H ++ I + + G + + PG +G +
Sbjct: 366 LNLAEQLLSQSHYSLSKYENLMRYIENESLWDVHNVKPLVDGKTLSKELNKKPGPWMGEV 425
Query: 385 LVHCKQEWINSSFQLSQEDLHHLLR 409
++ ++E+ ++
Sbjct: 426 TNMILVWQLDHP-SGTKEECIEFIK 449
>gi|146416643|ref|XP_001484291.1| hypothetical protein PGUG_03672 [Meyerozyma guilliermondii ATCC
6260]
Length = 452
Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 9/85 (10%), Positives = 27/85 (31%), Gaps = 7/85 (8%)
Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWK-----KPLFPLTGDDV-VKYGIPPGKKVGNI 384
+ LA + +H ++ I + + G + + PG +G +
Sbjct: 366 LNLAEQLLSQSHYSLSKYENLMRYIENESLWDVHNVKPLVDGKTLSKELNKKPGPWMGEV 425
Query: 385 LVHCKQEWINSSFQLSQEDLHHLLR 409
++ ++E+ ++
Sbjct: 426 TNMILVWQLDHPL-GTKEECIEFIK 449
>gi|326392695|ref|ZP_08213998.1| polynucleotide adenylyltransferase region [Thermoanaerobacter
ethanolicus JW 200]
gi|325991262|gb|EGD49951.1| polynucleotide adenylyltransferase region [Thermoanaerobacter
ethanolicus JW 200]
Length = 51
Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
+ G D+ G+PPG G ++ + + IN E++ L+KLI
Sbjct: 3 VKGKDIENLGLPPGSLYGELMDNVFEAKINGIIATRDEEI-AFLKKLIE 50
>gi|295398|gb|AAA27494.1| ORFB [Thermus thermophilus]
Length = 213
Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 33 GGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKIICRKKYFDI 91
GGAVRD L+ D+D A + P+ + + P G +++ ++ D
Sbjct: 2 GGAVRDLLLGRRPTDLDYA-ALDPEGAAEEAKRRLGGSLFPLDPKRGHYRLVVGERTLDF 60
Query: 92 TTL 94
T L
Sbjct: 61 TPL 63
>gi|182701743|ref|ZP_02955105.1| conserved domain protein [Clostridium botulinum NCTC 2916]
gi|182668783|gb|EDT80761.1| conserved domain protein [Clostridium botulinum NCTC 2916]
Length = 122
Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWK 359
+K + K Y +I+ L + + F +V + + +
Sbjct: 2 RKPIDKYLQNKEIYSLSLSNAKDNYEIYKILSKTYRFERVLLAWNLKFRYKVYNYEKNIR 61
Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394
+ G D+ + GI GK++G IL + K+ IN
Sbjct: 62 VIDLTVNGQDIKELGIKEGKEIGLILEYMKKYKIN 96
>gi|149003212|ref|ZP_01828108.1| polyA polymerase family protein [Streptococcus pneumoniae
SP14-BS69]
gi|147758672|gb|EDK65669.1| polyA polymerase family protein [Streptococcus pneumoniae
SP14-BS69]
Length = 199
Score = 50.2 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 81 KIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138
++ + +++TT R++ + R + V F R + D RRDFT+NA D+ G+++D
Sbjct: 1 MVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETGEIVDL 60
Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198
GL DL + ++ +G A R ED LRI+R FRF A G ++ + A L+
Sbjct: 61 FHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGF-ALEPETFKAMKTLTPLLE 119
Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
+S ER + E +KLL A + M +
Sbjct: 120 KISVERTFVEFDKLLLAPFWRRGLASMIESQAYDY 154
>gi|313623173|gb|EFR93434.1| CCA-adding enzyme [Listeria innocua FSL J1-023]
Length = 72
Score = 50.2 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 344 DTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQE 402
+ + + K +TG D++K+ G G V L + + + +
Sbjct: 2 KEDELKKAYELLPIHSKKDLAITGADLLKWTGENAGPWVKETLDKVECQVLLGKINNEKN 61
Query: 403 DLHHLL 408
+ L
Sbjct: 62 QIKRWL 67
>gi|303326497|ref|ZP_07356940.1| HD domain protein [Desulfovibrio sp. 3_1_syn3]
gi|302864413|gb|EFL87344.1| HD domain protein [Desulfovibrio sp. 3_1_syn3]
Length = 443
Score = 49.8 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/213 (9%), Positives = 58/213 (27%), Gaps = 8/213 (3%)
Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264
+E + + M + + + +++ + ++F +
Sbjct: 235 CQERDRDGVEVNVFDHTLECMKHYPEEGFHYDWLGTMAMLF----HDVGKLFTGEYFDGQ 290
Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324
K + ++ +E L N + + + F D+
Sbjct: 291 WTFYQHHRVGAKVTRKILRRLHFAQEDIDLLCHLVNHHMRFHFMMTDRGIRRFKAL-DEY 349
Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDII-HWKKPLFPLTGDDVV-KYGIPPGKKVG 382
L ++ ++ L + L G++++ + + PG VG
Sbjct: 350 PRLIAMARADLQAREGSYTSFNHNMKYLDRAETPEQMLEPLLNGNEIMSETRLAPGPMVG 409
Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
+ Q I + + +R+ S
Sbjct: 410 VLRDALLQAQITGEVTDLESAV-AFVREYARKS 441
>gi|326509581|dbj|BAJ87006.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 391
Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 16/225 (7%)
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGR---------YAKVVFTRDWKADSLRRDFTIN 125
+ + + ++++ + + + WK + RDFTIN
Sbjct: 1 RRFPIVHVHDNNSIVEVSSFNTYVRGSSGNQMPASKSPHCSKNDYLRWK-NCQGRDFTIN 59
Query: 126 ALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184
L K+ DY+GG+ D++ ++ + A ED RILR R A G +
Sbjct: 60 GLMFNPYSEKIYDYLGGIEDIKKAKVRTVIPAATSFHEDCARILRAIRIAARLGF-SFPK 118
Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----DVQE 240
+ + L R+ E+N +L + ++ ++ G+ + +
Sbjct: 119 ETAYYVRNLACSVARLDKGRLLMEVNYMLAYGSAEASLRLLWRFGLLEHLLPFQAAYFSS 178
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285
+ V K+DS L SIL+ +
Sbjct: 179 TLFKRKDNGTNMLLVLFSKLDSFLAPNRPCHNSLWISILAFHEAL 223
>gi|297621132|ref|YP_003709269.1| hypothetical protein wcw_0901 [Waddlia chondrophila WSU 86-1044]
gi|297376433|gb|ADI38263.1| hypothetical protein wcw_0901 [Waddlia chondrophila WSU 86-1044]
Length = 298
Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 36/267 (13%), Positives = 78/267 (29%), Gaps = 29/267 (10%)
Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKVIPTS 74
++ L I GGA+RD L + +DID + + + I + +++
Sbjct: 56 AVIETLINEGWDVYIRGGAMRDLLAPIPNEPKDIDFDYSGTTEELKAILDRHQWQYTQLP 115
Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134
+ R + + L + + +FTIN ++ K
Sbjct: 116 GRSTIVIGEHRGIHMEAVPL---------------SVAFGHGESSLEFTINNIFYHCNQK 160
Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194
+ +G + + + G + ++ K
Sbjct: 161 SLVPG-----------TEVGVVDLSYQRLNILTPNWKTWLYRKGRHPFERIFRSWNMIGK 209
Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIEAE 253
+ + + + P M + G E F D+ S+ + E
Sbjct: 210 GFVYSVDFANFLNREAVKKMHRFPDIFREEMLHYLGAHYESFDDIYYGSIAIMGYDWAQE 269
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILS 280
QV K ++ + I +D+ + S
Sbjct: 270 QVLSLKDEAEKKNIAGQDLRDQFTFFS 296
>gi|212543517|ref|XP_002151913.1| poly(A) polymerase, putative [Penicillium marneffei ATCC 18224]
gi|210066820|gb|EEA20913.1| poly(A) polymerase, putative [Penicillium marneffei ATCC 18224]
Length = 607
Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 30 CIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSK 65
VGG VRD L+ DID+A + +
Sbjct: 79 WFVGGWVRDKLLGNQSCDIDVAMSNMTGPEFASHLKD 115
>gi|153941073|ref|YP_001391118.1| hypothetical protein CLI_1860 [Clostridium botulinum F str.
Langeland]
gi|152936969|gb|ABS42467.1| conserved domain protein [Clostridium botulinum F str. Langeland]
gi|295319164|gb|ADF99541.1| conserved domain protein [Clostridium botulinum F str. 230613]
Length = 196
Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 12/147 (8%)
Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
IL++ F+ + F +K + K Y +I+
Sbjct: 46 YVRILNVLYSIKGEHGQSIFIDNSFLDKDLRKPIDKYLQNKEIYSLSLSNAKDNYEIYKI 105
Query: 335 LHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
L + + F +V + + + + G D+ K GI GK++G IL + K
Sbjct: 106 LSKTYSVERVLLAWNLKFRYKVYNYEKNIRVMNLAMNGQDIKKLGIKEGKEIGLILEYMK 165
Query: 390 QEWI------NSSFQLSQE-DLHHLLR 409
+ I +F + ++ + ++
Sbjct: 166 KYKINLGLLDEENFLIDNTGEIKNAIK 192
>gi|148379818|ref|YP_001254359.1| hypothetical protein CBO1858 [Clostridium botulinum A str. ATCC
3502]
gi|153930924|ref|YP_001384116.1| hypothetical protein CLB_1794 [Clostridium botulinum A str. ATCC
19397]
gi|153937751|ref|YP_001387656.1| hypothetical protein CLC_1801 [Clostridium botulinum A str. Hall]
gi|148289302|emb|CAL83398.1| hypothetical protein CBO1858 [Clostridium botulinum A str. ATCC
3502]
gi|152926968|gb|ABS32468.1| conserved domain protein [Clostridium botulinum A str. ATCC 19397]
gi|152933665|gb|ABS39164.1| conserved domain protein [Clostridium botulinum A str. Hall]
Length = 196
Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 5/125 (4%)
Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
IL++ F+ + F +K + K Y +I+
Sbjct: 46 YVRILNVLYSIKGEHGQSIFIDNSFLNKDLRKPIDKYLQNKEIYSLSLSNAKDNYEIYKI 105
Query: 335 LHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
L + + F +V + + + + G D+ + GI GK++G IL + K
Sbjct: 106 LSKTYSFERVLLAWNLKFRYKVYNYEKNIRVIDLTMNGQDIKELGIKEGKEIGLILEYMK 165
Query: 390 QEWIN 394
+ IN
Sbjct: 166 KYKIN 170
>gi|295111067|emb|CBL27817.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synergistetes
bacterium SGP1]
Length = 445
Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 67/436 (15%), Positives = 124/436 (28%), Gaps = 59/436 (13%)
Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75
+ +L + + ++ +VG + R M + + + +A + S ++
Sbjct: 20 LRVLKTVERTGVRAWLVGDSARMIEMGIEPEVMTLAVDA------KDLSSLSDRLDG--- 70
Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135
+ R LR ++ A + D RRD +I A+ G V
Sbjct: 71 ----ATVDARGT---FPVLRGSVLGAPFRAYSLQGDTIADDLARRDLSIEAIALRSDGGV 123
Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKA 193
+D GG D+RNR I+ GD I D LRI+R RF A G + ++
Sbjct: 124 VDPFGGRRDIRNRVIRLTGDDVELIDRDPLRIVRILRFAAELGMDVFWRTDMDVREFLRC 183
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-------SLDQL 246
W + P I + G+ D++++
Sbjct: 184 HAERMNAIPAERWGREIISGMKERPWRFISLCDHYGLLPVFLKDLEDLKSVPDGRGRTFF 243
Query: 247 SQVIEAEQVFEWKIDS-------------LLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
S V+ V E ++ + L I S K +
Sbjct: 244 SHVMATLSVIERRLPTHKIMQDEAFILAGLFSRIGTRSLNAGDEGERRRNKALTSSFLSQ 303
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFY----------LYGDKVMIAKLKIFLALHYNNLTHQ 343
+ I Q + +G M A L +
Sbjct: 304 WNIPAETIRAAQAIIDGYRRFYELRTEEDLCGAVLEHGADAMAAGLDFAGCIARAEGLPH 363
Query: 344 DT---CFILQVLSDIIHWKKPLFP-------LTGDDVVK-YGIPPGKKVGNILVHCKQEW 392
++ + +K L GD+V+ + PG+ +G +L
Sbjct: 364 LETLSENRWRLAQVLRRFKAVALQTGGASRFLGGDEVMSLLRLAPGRIIGALLDGLDVAV 423
Query: 393 INSSFQLSQEDLHHLL 408
+ ++
Sbjct: 424 GTGRVTNRAQAEEWIV 439
>gi|237755852|ref|ZP_04584449.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Sulfurihydrogenibium yellowstonense SS-5]
gi|237691988|gb|EEP60999.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Sulfurihydrogenibium yellowstonense SS-5]
Length = 147
Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-G 374
++ Y K + + NL I ++ + L+G++++K
Sbjct: 49 NWFWYKFKNVSDYCFLLSYSIDKNLEDFVLRLINHYENNYKNNIVEEPLLSGEEIMKLLN 108
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414
+ P K+VG I + I + ++ + +++ +
Sbjct: 109 LKPSKEVGIIKDSLIKAQIGGKVK-TKAEATKFVKEFKSE 147
>gi|256052504|ref|XP_002569806.1| homeobox protein [Schistosoma mansoni]
gi|227284530|emb|CAY17198.1| homeobox protein, putative [Schistosoma mansoni]
Length = 638
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 44/286 (15%), Positives = 103/286 (36%), Gaps = 13/286 (4%)
Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186
D ID + N ++ + + + Y E I +
Sbjct: 326 FTEDNMDHFIDSNRTDINHMNMYMRNGTNYKQLLNHNNHSQNELSNQLKTYFEPTIINCQ 385
Query: 187 LVASIK------AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
+ + GL ++S ER SE+ ++L + + M + G+F + L +
Sbjct: 386 HQRTSQSTIIASNANGLSMISGERCLSELKRILLYPSTPFLLRRMADAGLFVHLGLP-EN 444
Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
+ +L +I + + + + +++ D + ++ K+ L L+ N
Sbjct: 445 PNFKELD-IIWNKGILSSAPNPITCLAAIMTSPD--KVENLDKRLRLSNLDLTILLYILN 501
Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
LS K Y + +++ + + L + + W+
Sbjct: 502 KRDYYLNLSNENDKNEMRFYEKEYLLSFEPSKIKPAITEMLKYLGKDKL-FIDKWLLWQS 560
Query: 361 PLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405
P FP++G ++ ++ I K + +L +++W S ++LS ++L
Sbjct: 561 PKFPVSGTLLIDQWDIRD-KLMRPVLFKLREQWCESDYKLSADELL 605
>gi|141238|sp|P23138|YPE1_RHORU Uncharacterized 28 kDa protein in petA 5'region
gi|46383|emb|CAA39057.1| ORF1 [Rhodospirillum rubrum]
Length = 255
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 321 GDKVMIAKLKIFLALHYNNLTH---QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
G ++I + + A + + T ++ + W P FPL G D + G+
Sbjct: 27 GKDLVIDRALLRWAAERGKGPYPRAERTARWRALIETALGWTAPTFPLGGRDALACGLK- 85
Query: 378 GKKVGNILV 386
G VG
Sbjct: 86 GPAVGEAWR 94
>gi|170756126|ref|YP_001781406.1| hypothetical protein CLD_2782 [Clostridium botulinum B1 str. Okra]
gi|169121338|gb|ACA45174.1| conserved domain protein [Clostridium botulinum B1 str. Okra]
Length = 196
Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 5/125 (4%)
Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
IL++ F+ F +K + K Y +I+
Sbjct: 46 YVRILNVLYSIKGEHGQSIFIDKSFLDKDLRKPIDKYLQNKEIYSLSLSNAKDNYEIYKI 105
Query: 335 LHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
L + + F +V + + + + G D+ K GI GK++G IL + K
Sbjct: 106 LSKTYSFERVLLAWNLKFRYKVYNYEKNIRVINLTMNGQDIKKLGIKEGKEIGLILEYMK 165
Query: 390 QEWIN 394
+ IN
Sbjct: 166 KYKIN 170
>gi|293394530|ref|ZP_06638826.1| polyA polymerase [Serratia odorifera DSM 4582]
gi|291422995|gb|EFE96228.1| polyA polymerase [Serratia odorifera DSM 4582]
Length = 355
Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 53/329 (16%), Positives = 103/329 (31%), Gaps = 41/329 (12%)
Query: 83 ICRKKYFDITTLRSDLITDGRYAKV-------------VFTRDWKADSLRRDFTINALYA 129
+ + ++ T R + + K + D+ RRDFTIN+LY
Sbjct: 1 MFGPEIIEVATFRGHHEPNPEHDKNSSQQAQNGMLLRDNIFGSIEEDAQRRDFTINSLYY 60
Query: 130 DQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
+ DYVGG+ DL+ I+ IGD R ED +R+LR RF A I ++
Sbjct: 61 GVADFTLRDYVGGMRDLQQGVIRLIGDPETRYREDPVRMLRAVRFAAKLDM-TISNETAE 119
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
+ L + R++ E KLL++ + + +F+ +F +
Sbjct: 120 PIPRLASLLHEIPPARLFEESLKLLQSGYGFPTYLKLCEYQLFQPLFPLI---------- 169
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
A + R +V + + + +
Sbjct: 170 ---ARNFTPNHDTPMERMLVQVLKNTDHRLQNDMRVNPAFLFAAMLWYPLLEHAQKLAQE 226
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
S F L + V+ + + +D + LS +
Sbjct: 227 SGLAYYDAFALAMNDVLDEQCRSLAIPKRITTLVRDIWQLQLRLSRRQGKRAHK------ 280
Query: 369 DVVKYGIPPGKKVGNILVHC-KQEWINSS 396
++++ K + + ++
Sbjct: 281 -LMEH-----PKFRAAYDLLALRAQVENN 303
>gi|253577529|ref|ZP_04854842.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843069|gb|EES71104.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
Length = 96
Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 6/79 (7%), Positives = 18/79 (22%), Gaps = 1/79 (1%)
Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD-VVKYGIPPGKKVGNILVHCKQEWIN 394
Q ++ ++G + + G G + +L
Sbjct: 10 AKRQADQAILARAGQWHREVQVHTLKELAISGGEVLQTAGRKGGPWLSELLKQLLIAVAA 69
Query: 395 SSFQLSQEDLHHLLRKLIA 413
+ L + ++
Sbjct: 70 GELPNDRLTLLKHVETVVK 88
>gi|304439382|ref|ZP_07399294.1| poly(A) polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372164|gb|EFM25758.1| poly(A) polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 73
Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 28/68 (41%)
Query: 345 TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404
+ + ++ + + G DV+ GIP K V IL + ++ + +E+L
Sbjct: 3 EEDVAEKIASDECFSLKDLKIDGYDVMNAGIPQWKFVEQILDDILEMVLDGKIKNEKEEL 62
Query: 405 HHLLRKLI 412
+ K+
Sbjct: 63 IKVAVKMK 70
>gi|326536926|ref|YP_004306333.1| hypothetical protein phiIBB-PF7Ap16 [Pseudomonas phage
phiIBB-PF7A]
gi|318054502|gb|ADV35678.1| conserved hypothetical protein [Pseudomonas phage phiIBB-PF7A]
Length = 187
Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILP--DRVMRIFSKTRYKVIP 72
+N++ L I GG RD +DIDI D V + +++
Sbjct: 11 ALNLVKDLRDNGYSVIIAGGFARDVYFGADPKDIDIVVAAGSIHDDVKEAHAILGEELVK 70
Query: 73 TSISY 77
+ +
Sbjct: 71 LGVQH 75
>gi|322806096|emb|CBZ03663.1| tRNA nucleotidyltransferase, A-adding [Clostridium botulinum H04402
065]
Length = 196
Score = 47.1 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 5/125 (4%)
Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334
IL++ F+ + F ++ + K Y +I+
Sbjct: 46 YVRILNVLYSIKGEHGQSIFIDNSFLNKDLRRPIDKYLQNKGIYSLSLSNAKDNYEIYKI 105
Query: 335 LHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389
L + + F +V + + + + G D+ + GI GK++G IL + K
Sbjct: 106 LSKTYSFERVLLAWNLKFRYKVYNYEKNIRVIDLTMNGQDIRELGIKEGKEIGLILEYMK 165
Query: 390 QEWIN 394
+ IN
Sbjct: 166 KYKIN 170
>gi|163847877|ref|YP_001635921.1| hypothetical protein Caur_2323 [Chloroflexus aurantiacus J-10-fl]
gi|163669166|gb|ABY35532.1| hypothetical protein Caur_2323 [Chloroflexus aurantiacus J-10-fl]
Length = 79
Score = 47.1 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 10 FHDSDLINILSLLNKGEDK-SCIVGGAVRDSLMNLSVQDIDIATTILP 56
+ L N+ L+ + +VGGAVR+ L D+D+A
Sbjct: 16 MVNDQLNNLFRLITACTSRPVWLVGGAVRELLTGHQPVDLDLAIDGSG 63
>gi|163847878|ref|YP_001635922.1| hypothetical protein Caur_2324 [Chloroflexus aurantiacus J-10-fl]
gi|163669167|gb|ABY35533.1| hypothetical protein Caur_2324 [Chloroflexus aurantiacus J-10-fl]
Length = 79
Score = 46.7 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 10 FHDSDLINILSLLNKGEDK-SCIVGGAVRDSLMNLSVQDIDIATTILP 56
+ L N+ L+ + +VGGAVR+ L D+D+A
Sbjct: 16 MVNDQLNNLFQLITACTSRPVWLVGGAVRELLTGHQPVDLDLAIDGSG 63
>gi|290976010|ref|XP_002670734.1| predicted protein [Naegleria gruberi]
gi|284084296|gb|EFC37990.1| predicted protein [Naegleria gruberi]
Length = 555
Score = 46.7 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 34/180 (18%), Positives = 71/180 (39%), Gaps = 28/180 (15%)
Query: 21 LLNKGEDKSCIVGGAVRD--------------SLMNLSVQDIDIATTILPDRVMRIFSKT 66
++ + + IVGGAVRD +MN +++DIDI P ++
Sbjct: 309 MIEQHDIPIFIVGGAVRDVIREVIVEKKTNALQIMN-NIKDIDIGFGCDPQTFHGRLTRK 367
Query: 67 RYKVIPTSISYGTIKIICRK------KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
+P G +++ + I L +D + + + + +++ R
Sbjct: 368 YKSGVPIPGPRGLVQVGSSNGSDLFLEGKAINGLNNDNKSVKAQIAQCYGTNLRGENICR 427
Query: 121 DFTINALYA-DQQGKVIDYVGGLNDLRNRTIKF------IGDAHHRILEDYLRILRFFRF 173
DFT N+L+ +ID +G +++ K D + + +++RF++F
Sbjct: 428 DFTCNSLWYDPINKCIIDTIGNGQGIKDVISKNLRIPVKPRDWEFWVSGNPTKLMRFYKF 487
>gi|46205150|ref|ZP_00048956.2| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase
[Magnetospirillum magnetotacticum MS-1]
Length = 70
Score = 46.0 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415
TG D+V G+PPG+ VG L ++ W+ S L+ + + ++
Sbjct: 2 TGADLVARGVPPGQAVGAGLRAAQEHWLASGCPDDAAARERLILRALEAA 51
>gi|29366714|ref|NP_813759.1| hypothetical protein gh-1p13 [Pseudomonas phage gh-1]
gi|29243573|gb|AAO73152.1|AF493143_13 unknown [Pseudomonas phage gh-1]
Length = 184
Score = 45.6 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSIS 76
+ L + I GG RD + +DIDI P+ V R
Sbjct: 12 LCEHLIGLGIGAIIAGGCARDLFFGVEPKDIDIICAGSDPETVSRAL-DEGGYSYEKFPK 70
Query: 77 YGT 79
Y T
Sbjct: 71 YHT 73
>gi|325272842|ref|ZP_08139179.1| hypothetical protein G1E_07763 [Pseudomonas sp. TJI-51]
gi|324102047|gb|EGB99556.1| hypothetical protein G1E_07763 [Pseudomonas sp. TJI-51]
Length = 187
Score = 45.2 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 33 GGAVRDSLMNLSVQDIDI 50
GGAVRD+L+ ++DID+
Sbjct: 36 GGAVRDALLGRPIKDIDV 53
>gi|307128599|ref|YP_003880629.1| tRNA nucleotidyltransferase [Candidatus Sulcia muelleri CARI]
gi|306483061|gb|ADM89931.1| tRNA nucleotidyltransferase [Candidatus Sulcia muelleri CARI]
Length = 442
Score = 45.2 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 60/428 (14%), Positives = 128/428 (29%), Gaps = 50/428 (11%)
Query: 12 DSDLINILSL-LNKGEDKSCIVGGAVRDS-LMNLSVQDIDIATTILPDRVMRIFSKTRYK 69
D ++ I+ +N KS ++GG VRD ++ I I T + ++ + K Y
Sbjct: 8 DKNIFYIIRTYVNNINKKSYVIGGYVRDFLKKKKKLKKISIITVVNCIKLAKKVCKKLYP 67
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129
I + + +I + + + D+
Sbjct: 68 KYNIYIFKNLGIAMYKNTNLNIEFFCVKKLKYFQKKINLTINTLAISLNHLDY------- 120
Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
GK+ID GGL D+ + I+ D + +R +RF+ N +
Sbjct: 121 ---GKLIDPFGGLFDINKKKIRSTLDRDITDIIRIIRAIRFYIKLNFKIYNNKKIIKIFY 177
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ + + I K L +I+ I + + + +
Sbjct: 178 KKRIIYEFNKILLYKK-PSIGIFYLYKIGLLSIILPELINIKGIEIQNNFKHKDNFFHTL 236
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----------------PREIRY 293
+ + + + L++ L+ K K F ++
Sbjct: 237 EVVDNISIYTNNIWLKWAALLHDIGKSITKKYKKNFGWTFYSHELIGSKMITSIFERLKL 296
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI-------AKLKIFLALHYNNLTHQDTC 346
N S I + Y D + ++ + L +++T Q+
Sbjct: 297 PKKKNIKYVKNIIKYSSRPITLISYTATDSSIRRLLFDIGDDIEDLILLCKSDITTQNLI 356
Query: 347 FILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEW 392
Q ++ + + P++G ++ +GI K++G + K
Sbjct: 357 KKKQYNKNLFLLKKKIKKIKKKDKIRNWISPISGYHIMNIFGINSCKEIGILKKSLKNAI 416
Query: 393 INSSFQLS 400
I Q +
Sbjct: 417 IKGIIQNN 424
>gi|325916461|ref|ZP_08178732.1| poly(A) polymerase [Xanthomonas vesicatoria ATCC 35937]
gi|325537319|gb|EGD09044.1| poly(A) polymerase [Xanthomonas vesicatoria ATCC 35937]
Length = 351
Score = 45.2 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 83 ICRKKYFDITTLRSDLIT--------DGRYAKVVFTRDWKADSLRRDFTINALYADQ-QG 133
+ ++ ++ T R+++ +GR + + D++RRDFT NALY
Sbjct: 2 VFGREIIEVATFRANIDDGSGDRELDNGRLVRDNVYGSIEDDAIRRDFTCNALYYAIEDF 61
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
V DY GG D++ + +K IGD R ED +R+LR R A I++ +
Sbjct: 62 SVRDYCGGFEDVQAKLMKLIGDPELRYQEDPVRMLRAVRLAAKLNF-EIEAGSAEPIPRL 120
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
L + R++ EI KL + + + + + G+ +F +
Sbjct: 121 AGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGALFPE 164
>gi|153872944|ref|ZP_02001693.1| polyA polymerase [Beggiatoa sp. PS]
gi|152070589|gb|EDN68306.1| polyA polymerase [Beggiatoa sp. PS]
Length = 314
Score = 44.8 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 91/244 (37%), Gaps = 2/244 (0%)
Query: 108 VFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166
++ D+ RRDFTINALY D ++DY GL+DL+ I+ IG R ED +R
Sbjct: 1 MYGSTVSDDAWRRDFTINALYYDISDFSLLDYANGLSDLQAGIIRLIGKPKLRYQEDPVR 60
Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226
+LR RF A I + + L + R++ E+ KL + + + V +
Sbjct: 61 MLRAIRFSAKLNF-TIAPETAELIPQLGGLLANIPPARLFEEVLKLFLSGHAEQSFVELQ 119
Query: 227 NGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286
+FK +F D ++ + + + + + + +
Sbjct: 120 RYNLFKHLFPYTDACLDDPIALALVKQVLHNTDKRKNNHKPITPDFLLATLLWPSLSRLL 179
Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346
+ + QKTL+ + ++ L L + + + +
Sbjct: 180 PEQSTKGSNQQQILLEAGQKTLAKQQRHVAIPRRIAILIQEIWLFQLRLTRSRRSKKKSL 239
Query: 347 FILQ 350
+L+
Sbjct: 240 GLLE 243
>gi|149920111|ref|ZP_01908584.1| putative RNA nucleotidyltransferase [Plesiocystis pacifica SIR-1]
gi|149819054|gb|EDM78491.1| putative RNA nucleotidyltransferase [Plesiocystis pacifica SIR-1]
Length = 301
Score = 44.8 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 28/298 (9%), Positives = 74/298 (24%), Gaps = 54/298 (18%)
Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209
+ G R L R + + A+ + + ++ +
Sbjct: 1 MIRSGCEEPRWLTLACEAGRTGQSCD--------LEHAAAARAQGRAEPERDPVQAYALL 52
Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK--------ID 261
+ L ++P A+ ++ G +++ + V+E
Sbjct: 53 TQALCTRHPHVAMQALHETGALAAYLPELEATVDFSQEAGRRHKDVWEHTKTVVWQSVPT 112
Query: 262 SLLRFIVLISWQDKKSILSMAK-----------------------KFSLPREIRYFLISF 298
+R+ + K + + P + +
Sbjct: 113 PTVRWAAALHDIGKVPTRRFLPGGGVTFHGHAELGQRMFERGPARRIAFPEPVHVRVSEL 172
Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358
+ + + L L L ++T + + L I
Sbjct: 173 IRLHLRPGQYEPGWTDSAVRRFRKEAG-EHLDDLLNLSRADITSKRPGKRKRCLRSISAL 231
Query: 359 KKPLFPLT-------------GDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402
K + L G ++ + G+ PG ++ + +Q + + +E
Sbjct: 232 AKRIRALDALDNRPQPLPSGLGHALIRELGLTPGPQIKVLRERLEQACHAGTLESGRE 289
>gi|326424979|ref|YP_004286201.1| putative nucleotidyl transferase [Pseudomonas phage phi15]
gi|325048383|emb|CBZ41996.1| putative nucleotidyl transferase [Pseudomonas phage phi15]
Length = 190
Score = 44.4 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI 54
IN+ L I GG RD +DIDI
Sbjct: 11 AINLRDQLEALGFSVVIAGGFCRDVYFGEPPKDIDIVVAG 50
>gi|262044810|ref|ZP_06017853.1| polyA polymerase [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|330010451|ref|ZP_08306754.1| polynucleotide adenylyltransferase [Klebsiella sp. MS 92-3]
gi|259037779|gb|EEW39007.1| polyA polymerase [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|328534553|gb|EGF61137.1| polynucleotide adenylyltransferase [Klebsiella sp. MS 92-3]
Length = 353
Score = 44.4 bits (103), Expect = 0.035, Method: Composition-based stats.
Identities = 56/329 (17%), Positives = 106/329 (32%), Gaps = 26/329 (7%)
Query: 83 ICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLRRDFTINALYAD 130
+ + ++ T R G + + D+ RRDFTIN+LY
Sbjct: 1 MFGPEIIEVATFRGHHEGHTTDRVTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYS 60
Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189
V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A I +
Sbjct: 61 VADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVRMLRAVRFAAKLNM-TISPETAEP 119
Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249
+ L + R++ E+ KLL+A + + +F+ +F + ++
Sbjct: 120 LPRLAALLHDVPPARLFEEVLKLLQAGYGYQTYMLLREYSLFQPLFPTITRYFTERGDSP 179
Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309
+E K + + + + ++
Sbjct: 180 MERIISQVLKNTDTRIHNDMRVNPAFLFAVMFWYPLLETAQKIAQESGLAYYDAFALAMN 239
Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369
+ L K + ++ L Q L + ++ D
Sbjct: 240 DVLDEACRTLAIPKRITTLIRDIWQLQLRMSRRQGKRAWK--LMEHPKFRA------AYD 291
Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQ 398
+++ G + + L + W FQ
Sbjct: 292 LLEL--RAGAENNHELQRLTKWW--GEFQ 316
>gi|325923325|ref|ZP_08184997.1| poly(A) polymerase [Xanthomonas gardneri ATCC 19865]
gi|325546192|gb|EGD17374.1| poly(A) polymerase [Xanthomonas gardneri ATCC 19865]
Length = 351
Score = 44.4 bits (103), Expect = 0.037, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 83 ICRKKYFDITTLRSDLIT--------DGRYAKVVFTRDWKADSLRRDFTINALYADQ-QG 133
+ ++ ++ T R+++ +GR + + D++RRDFT NALY
Sbjct: 2 VFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGSIEDDAIRRDFTCNALYYAIEDF 61
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
V DY GG D++ R +K IG+ R ED +R+LR R A +I++
Sbjct: 62 SVRDYCGGFEDVQARLMKLIGNPELRYQEDPVRMLRAVRLAAKLNF-DIEAGTAEPIPLL 120
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237
L + R++ EI KL + + + + + G+ +F +
Sbjct: 121 AGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGALFPE 164
>gi|559391|emb|CAA57198.1| unnamed protein product [Acidaminococcus fermentans DSM 20731]
Length = 256
Score = 44.0 bits (102), Expect = 0.038, Method: Composition-based stats.
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 7/198 (3%)
Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRIL 161
R ++V + + + D RRDFTINAL DQ+G + D GL+DLR R ++ +GD R
Sbjct: 15 HRPSEVWYCKTLEEDLSRRDFTINALAVDQEGHITDCFHGLDDLRGRVLRTVGDPDRRFS 74
Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221
ED LR+ R RF G + + + + LS ER+ +E+NKLL
Sbjct: 75 EDALRMFRACRFVGQLGFAPDPAILPAIG-RNLQKVPGLSLERVRTELNKLLMGTYAGEG 133
Query: 222 IVHMYNGGIFKEIFLDVQE------ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK 275
+ M G+ E ++ L +L+ ++ Q ++ + + + +
Sbjct: 134 MDLMVKSGLAAESCRVRRKGQYETVPILPELTHLVGLGQNPQFHPYDVWKHTAVALDKGD 193
Query: 276 KSILSMAKKFSLPREIRY 293
+S+ +
Sbjct: 194 RSLEVGWGILLHDVPRAW 211
>gi|229604940|ref|YP_002875640.1| hypothetical protein VPP93_gp16 [Vibrio phage VP93]
gi|227976985|gb|ACP44087.1| hypothetical protein VPP93_gp16 [Vibrio phage VP93]
Length = 197
Score = 44.0 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT 52
D++ ++ K + + GGAVRD +D+DI
Sbjct: 12 DIMQLVRTTVKDSYEVAVAGGAVRDMARGFKPKDLDIVV 50
>gi|226355439|ref|YP_002785179.1| nucleotidyltransferase [Deinococcus deserti VCD115]
Length = 396
Score = 44.0 bits (102), Expect = 0.047, Method: Composition-based stats.
Identities = 58/337 (17%), Positives = 106/337 (31%), Gaps = 50/337 (14%)
Query: 94 LRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFI 153
R + ++ V + AD LRRDFT+NAL +V+D G DLR + ++ +
Sbjct: 29 WRVHAPGEIQHDFVPLPAEVTADLLRRDFTVNALALTADRQVLDPAQGQQDLRTKQLRMV 88
Query: 154 GDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI----LSSERIWSEI 209
+ + D LR+ R RF + ++ERI E+
Sbjct: 89 SADN--LWADPLRVWRAARFEVTLRFRLEAETERTVREVTTALASGRLSMPAAERIRDEL 146
Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---------ISLDQLSQVIEAEQVF---E 257
+ LL N I + + G+ +++E LD +EA
Sbjct: 147 HALLSHPNSALGIQRLEDLGLLSLTMPELREGRGMLQGGFHHLDVFDHGVEALHQLLARR 206
Query: 258 WKIDSLLRFIVLISWQDKKSILSM-----------------------AKKFSLPREIRYF 294
D LR+ L+ K + + LP
Sbjct: 207 PDADLPLRWATLLHDVGKPRTRATDPDTGRTSFHGHDRLGAELTSAVLTRLKLPAGDVRR 266
Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI-------AKLKIFLALHYNNLTHQDTCF 347
+ + + E ++ + + + + +
Sbjct: 267 AAALVGAHMVPLPATEREARRFVHRRRELLPDLLSLMLADREAARGPMSSPASRRAYAQG 326
Query: 348 ILQVLSDIIHWKKPLFPL-TGDDVVKY-GIPPGKKVG 382
+ +VL+ + P PL +G +V+ PG +VG
Sbjct: 327 MDRVLAALEEQPAPPPPLLSGQEVMALLNTGPGPRVG 363
>gi|225849030|ref|YP_002729194.1| poly A polymerase [Sulfurihydrogenibium azorense Az-Fu1]
gi|225643484|gb|ACN98534.1| putative poly A polymerase [Sulfurihydrogenibium azorense Az-Fu1]
Length = 147
Score = 43.7 bits (101), Expect = 0.053, Method: Composition-based stats.
Identities = 12/125 (9%), Positives = 36/125 (28%), Gaps = 1/125 (0%)
Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344
+ ++ + K + + Y K + I + +
Sbjct: 18 LLPEKPFKFMKSTRKAAVEILKGQYRDFFQMNLFWYNYKDVAIYSFIMVLAVKSQFKDFI 77
Query: 345 TCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED 403
+ + L+G ++++ + P K+VG I + + +E
Sbjct: 78 LNIQKHYFENYLGKVVDEPLLSGSEIMRILDLKPSKEVGIIKEKLILAQLKGEVKTKEEA 137
Query: 404 LHHLL 408
+ ++
Sbjct: 138 IQYVK 142
>gi|205356757|ref|ZP_03223517.1| putative RNA nucleotidyltransferase [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205345396|gb|EDZ32039.1| putative RNA nucleotidyltransferase [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 310
Score = 43.7 bits (101), Expect = 0.054, Method: Composition-based stats.
Identities = 49/340 (14%), Positives = 101/340 (29%), Gaps = 41/340 (12%)
Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKV--VFTRDWKADSLRRDFTINALYAD-QQG 133
+G + + K +D+ R++ + D K + RRDFTIN++ +
Sbjct: 9 FGKSFFVYKFKNYDLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLFND 68
Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193
+ +D+ GGL DL ++ ED LR+LR F + + K +
Sbjct: 69 EFLDFYGGLKDLGAGFLR--HIDKQSFQEDSLRVLRAVVFASRFNFKITSESLKLMQSMD 126
Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253
L + K + + + + + ++
Sbjct: 127 ITDLSKDRINAELYKFFKSPRLDVGYRYLQELDLEKQIFGFESIFKSL---EFQNLLRQS 183
Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313
+ F L + +K +++ + + N F +S E+
Sbjct: 184 REFVKSDALFLYLYLNFFNLEKDIFFKRT-------KLQKEYLKYANQAFYLDDISDFEL 236
Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373
K+ + K + L + F ++L D +
Sbjct: 237 AKIAFEMPLKEWLGLWSKKRIEQAKRLGLYENKFESKIL--------------AKDFINA 282
Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413
G GK +G L ++ +L ++ L
Sbjct: 283 GF-CGKILGLKLQEARE-----------NELKEYIKGLAK 310
>gi|220904822|ref|YP_002480134.1| polynucleotide adenylyltransferase protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219869121|gb|ACL49456.1| Polynucleotide adenylyltransferase region [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 354
Score = 43.7 bits (101), Expect = 0.057, Method: Composition-based stats.
Identities = 49/264 (18%), Positives = 78/264 (29%), Gaps = 34/264 (12%)
Query: 39 SLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL 98
L+ + ++D A T + ++ K + R
Sbjct: 1 MLLGRTPVELDFAFTGS---MKNFLARH-------------PDARLVGKSVHVCLWR--- 41
Query: 99 ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHH 158
GR + D + D RD TINAL D G++ + L DLR + ++ A
Sbjct: 42 ---GRECMPLRGGDIEEDLAARDLTINALALDNVGRLHMHPQALEDLRQQILRPASPAA- 97
Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKN 217
D RI R RF A + ID L +ER+ E K L A
Sbjct: 98 -FAADPTRIFRLARFAAAWPGWRIDRSAFEQMRALSAQTLAALPAERVGRETLKALAAPA 156
Query: 218 PLNAIVHMYNGGIFKEIFLDVQ-EISLDQLSQVIEAEQVFEWKI--------DSLLRFIV 268
P + G F ++ + + + V + D + ++
Sbjct: 157 PARFFRVLAQGHALTPWFTELATAAGIPAGPRRWHSNSVLGHSLRIMDLVTGDPVAAWMA 216
Query: 269 LISWQDKKSILSMAKKFSLPREIR 292
L K E R
Sbjct: 217 LCHDLGKIRTDPALLPHHYGHEQR 240
>gi|290970609|ref|XP_002668193.1| predicted protein [Naegleria gruberi]
gi|284081436|gb|EFC35449.1| predicted protein [Naegleria gruberi]
Length = 218
Score = 43.7 bits (101), Expect = 0.062, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 68/177 (38%), Gaps = 26/177 (14%)
Query: 23 NKGEDKSCIVGGAVRDSLMNL-------------SVQDIDIATTILPDRVMRIFSKTRYK 69
+ + IVGGAVRD + + +++DIDI P ++
Sbjct: 3 EQHDIPIFIVGGAVRDVIREVIVEKKTNALQIMNNIKDIDIGFGCDPQTFHGRLTRKYKS 62
Query: 70 VIPTSISYGTIKIICRK------KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123
+P G +++ + I L +D + + + + +++ RDFT
Sbjct: 63 GVPIPGPRGLVQVGSSNGSDLFLEGKAINGLNNDNKSVKAQIAQCYGTNLRGENICRDFT 122
Query: 124 INALYA-DQQGKVIDYVGGLNDLRNRTIKF------IGDAHHRILEDYLRILRFFRF 173
N+L+ +ID +G +++ K D + + +++RF++F
Sbjct: 123 CNSLWYDPINKCIIDTIGNGQGIKDVISKNLRIPVKPRDWEFWVSGNPTKLMRFYKF 179
>gi|156362222|ref|XP_001625679.1| predicted protein [Nematostella vectensis]
gi|156212523|gb|EDO33579.1| predicted protein [Nematostella vectensis]
Length = 821
Score = 43.7 bits (101), Expect = 0.064, Method: Composition-based stats.
Identities = 36/304 (11%), Positives = 73/304 (24%), Gaps = 14/304 (4%)
Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150
+ R A ++ T+ + L N
Sbjct: 476 YNSTRHYPYYCLTLATNHPYYNFTRHYPYYCLTLATNHPYYNSTRHYPYYCLTLAANHPY 535
Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210
+ ++ F HY + + + +
Sbjct: 536 YNSTRHYPYYCLTLATNHPYYNFTHHYPYYCLTLATNHPYYNSTRHYPYYCLTLAANHPY 595
Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270
P + N + Q SQV+ ++ + V++
Sbjct: 596 YNSTRHYPYYCLTLATNHPYYNSTRHHPYYCHHRQPSQVVRKPALYVLIKQFNCKDHVVL 655
Query: 271 SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM--IAK 328
++ + R L+ F K +S E+ + +
Sbjct: 656 DALLQQM---SSSYNWKHRLEAAELLIFIGSRDVFKVMSEDEVFDVLEKLLWDHANKELR 712
Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY---GIPPGKKVGNIL 385
LKI AL L + L+ L D P + G V+ G+ K++ +L
Sbjct: 713 LKISEALAAMGLRQRACALALRRLED------PKEEVRGRAVISLATLGMKGTKEMKALL 766
Query: 386 VHCK 389
+
Sbjct: 767 DLLE 770
>gi|153840014|ref|ZP_01992681.1| poly(A) polymerase [Vibrio parahaemolyticus AQ3810]
gi|149746445|gb|EDM57460.1| poly(A) polymerase [Vibrio parahaemolyticus AQ3810]
Length = 350
Score = 43.3 bits (100), Expect = 0.073, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 89/239 (37%), Gaps = 4/239 (1%)
Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
D+ RRDFTIN++Y + + DY G+ DL +R I+ IGD R ED +R+LR RF
Sbjct: 43 DAERRDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVRFA 102
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
+I+ D + L+ + S R++ E KLL++ + L + +F+++
Sbjct: 103 VKLDF-DIEEDTAAPIEEMAPLLREIPSARLFEESLKLLQSGHGLETYHLLREYNLFQQL 161
Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS--LPREIR 292
F + E + S E + + + +
Sbjct: 162 FPAISEHFTEDYSSHTEQMLDLVLDSTDMRIEDGKRINPAFMFAAMLWYPLCALADKLMD 221
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ ++ + + + + + + L L + ++++
Sbjct: 222 QHNLCHYDAIMEASNIILDDQVRTIAIPRRHTATIREIWQLQLRLPRRNGKRAFRLMEL 280
>gi|332158475|ref|YP_004423754.1| V-type ATP synthase subunit C [Pyrococcus sp. NA2]
gi|331033938|gb|AEC51750.1| V-type ATP synthase subunit C [Pyrococcus sp. NA2]
Length = 370
Score = 42.9 bits (99), Expect = 0.087, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL-SDIIHWKKP---------LFPLTGD 368
G++ +I++ + + + Y N+ + + +I + P + +
Sbjct: 214 RKGEERIISQEFVNMLIDYKNINVILRAKLSSLSPEEIRNLIIPGGSLSRSTIEAMINSE 273
Query: 369 DVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL-LRKLIASSQ 416
DV+ G G + G +L ++ + +E L ++++ SQ
Sbjct: 274 DVMMALGELEGSRYGEVLKDVREAIEEGKIEKVEEALKKYMIKRMKELSQ 323
>gi|114564439|ref|YP_751953.1| poly(A) polymerase [Shewanella frigidimarina NCIMB 400]
gi|114335732|gb|ABI73114.1| poly(A) polymerase [Shewanella frigidimarina NCIMB 400]
Length = 353
Score = 42.9 bits (99), Expect = 0.094, Method: Composition-based stats.
Identities = 57/293 (19%), Positives = 101/293 (34%), Gaps = 20/293 (6%)
Query: 83 ICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132
+ + ++ T R +GR + + D+ RRDFTINALY D
Sbjct: 1 MFGRDVIEVATFRGHHSESNDKVSKSNAEGRLLRDNVYGEIDEDAERRDFTINALYYDIS 60
Query: 133 GKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191
I GG+NDL RTIK IGD R ED +R+LR RF + ID+
Sbjct: 61 DYSIRSYGGGINDLNARTIKLIGDPDTRYREDPVRMLRAVRFATKLDMQ-IDAVTADPIK 119
Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD------- 244
L + + R++ E+ KL A M G+F +F V + +
Sbjct: 120 ALAPLLADIPAARMYEEVLKLFFAGKAEANYNMMQRFGLFAPLFPQVGALIEESPKGHAA 179
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-NF 303
++ QV+ D + + + A ++ + ++ +
Sbjct: 180 KMLQVVMRNTDIRVSEDKTVTPAFFFAAILWYPVKQRADDIAIESGLTHYDAYVAAMGDV 239
Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356
+K + + F + +L++ + ++
Sbjct: 240 LEKQCLTISLPRRFSTPARDIWQLQLRLERGQGTRAFKLLEHPKFRAAYDLLL 292
>gi|224371663|ref|YP_002605827.1| ABC-type sugar transport-system, permease component
[Desulfobacterium autotrophicum HRM2]
gi|223694380|gb|ACN17663.1| ABC-type sugar transport-system, permease component
[Desulfobacterium autotrophicum HRM2]
Length = 82
Score = 42.9 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 362 LFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408
+ G+ ++ + PG KVG I+ + +++ + + L+
Sbjct: 30 DLAINGNRIMALLNLNPGPKVGQIMDVLFDQVLDTPDLNTPSAMETLV 77
>gi|26988996|ref|NP_744421.1| hypothetical protein PP_2272 [Pseudomonas putida KT2440]
gi|24983816|gb|AAN67885.1|AE016420_7 hypothetical protein PP_2272 [Pseudomonas putida KT2440]
Length = 201
Score = 42.5 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 33 GGAVRDSLMNLSVQDIDI 50
GGA+RD+L+ ++DID+
Sbjct: 50 GGAIRDALLGRPIKDIDV 67
>gi|46205395|ref|ZP_00209841.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase
[Magnetospirillum magnetotacticum MS-1]
Length = 199
Score = 42.1 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHC 388
++ D + L L G +++ GI PG VG H
Sbjct: 94 AQRLRESYDDLERRIADLQAKEELDAVRPDLDGQQIMEILGIRPGPVVGKAYKHL 148
>gi|313207208|ref|YP_004046385.1| hypothetical protein Riean_1724 [Riemerella anatipestifer DSM
15868]
gi|312446524|gb|ADQ82879.1| hypothetical protein Riean_1724 [Riemerella anatipestifer DSM
15868]
gi|315022390|gb|EFT35417.1| hypothetical protein RAYM_04296 [Riemerella anatipestifer RA-YM]
gi|325335353|gb|ADZ11627.1| hypothetical protein RIA_0458 [Riemerella anatipestifer RA-GD]
Length = 461
Score = 42.1 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
+TG D++ G G+ L + + QLSQE+L L +
Sbjct: 2 ITGRDILNLGYESGRWFKEALEYA------NQHQLSQEELKSYLEE 41
>gi|213579923|ref|ZP_03361749.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E98-0664]
Length = 277
Score = 41.7 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 53/287 (18%), Positives = 94/287 (32%), Gaps = 28/287 (9%)
Query: 112 DWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170
+ D+ RRDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR
Sbjct: 8 SIEEDAQRRDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRA 67
Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230
RF A I + + L + R++ E KLL+A N + +
Sbjct: 68 VRFAAKLNM-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHL 126
Query: 231 FKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290
F+ +F + + +E R I + I + +
Sbjct: 127 FQPLFPTITRYFTENGDSAME-------------RIIAQVLKNTDNRIRNEMRVNPAFLF 173
Query: 291 IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
F S F L + V+ + +D +
Sbjct: 174 AAMFWYPLLEMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQL 233
Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK-QEWINSS 396
+S + ++++ K + + + ++
Sbjct: 234 RMSRRQGKRAWK-------LMEH-----PKFRAAFDLLELRAQVENN 268
>gi|260814894|ref|XP_002602148.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae]
gi|229287455|gb|EEN58160.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae]
Length = 215
Score = 41.7 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 14/202 (6%), Positives = 32/202 (15%), Gaps = 7/202 (3%)
Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181
FT + + L F + L H+
Sbjct: 12 FTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWI 71
Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG-------IFKEI 234
I + ++ + I
Sbjct: 72 FTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWI 131
Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294
F + S L ++ + + + I + ++
Sbjct: 132 FTCLHWCSRGDLHMLLNIYWCWGIFTCVHWCWGIFTCIHWWWWIFTCLHWCWGIFTCVHW 191
Query: 295 LISFFNCNFNQKTLSIPEIKKL 316
F C +
Sbjct: 192 CWGIFTCIHWWWWIFTCLHWCW 213
>gi|291394385|ref|XP_002713584.1| PREDICTED: elaC homolog 1-like [Oryctolagus cuniculus]
Length = 363
Score = 41.7 bits (96), Expect = 0.24, Method: Composition-based stats.
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L + G+PPG G + + + +S +++
Sbjct: 200 LNAQKLKDLGVPPGPAYGKLKNGI-SIVLENGVTISPQEVLK 240
>gi|229507201|ref|ZP_04396707.1| poly(A) polymerase [Vibrio cholerae BX 330286]
gi|229355946|gb|EEO20866.1| poly(A) polymerase [Vibrio cholerae BX 330286]
Length = 318
Score = 41.4 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
D+ RRDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF
Sbjct: 8 DAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFA 67
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
+I+ D + L+ + + R++ E K+L+A + L M +F+++
Sbjct: 68 VKLDF-DIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQL 126
Query: 235 FLDVQEI-------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287
F + E +Q+ ++ + D + + + ++ +A +
Sbjct: 127 FPTIAEHFTADHSSKTEQMLDLVLDATDIRVEEDLRINPAFMFAAMLWYPMIDLADRLME 186
Query: 288 P 288
Sbjct: 187 S 187
>gi|299755930|ref|XP_001828982.2| transfer RNA nucleotidyltransferase [Coprinopsis cinerea
okayama7#130]
gi|298411445|gb|EAU92989.2| transfer RNA nucleotidyltransferase [Coprinopsis cinerea
okayama7#130]
Length = 477
Score = 41.4 bits (95), Expect = 0.30, Method: Composition-based stats.
Identities = 12/137 (8%), Positives = 35/137 (25%), Gaps = 5/137 (3%)
Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337
+ R + N + + + + L +
Sbjct: 319 LEYPTFYTEHKRSRIGMFLRHKNIHHLNAGVHWSSSFLFSLVTEMGELYDLNADKLDVDR 378
Query: 338 NNLTHQDTCFILQVLSDIIHWKK--PLFPLTGDDV-VKYGIPPG-KKVGNILVHCKQEWI 393
+ + ++ ++ + L G +V G G + L + +
Sbjct: 379 ASALVERYNQFATLVEELELYDAGEMRPLLDGREVSTALGAKKGGPWLAEALSKVVEWQL 438
Query: 394 NSSFQLSQEDLHHLLRK 410
++ Q +E L++
Sbjct: 439 DNPQQN-KEQCTAWLKR 454
>gi|156741039|ref|YP_001431168.1| hypothetical protein Rcas_1048 [Roseiflexus castenholzii DSM 13941]
gi|156232367|gb|ABU57150.1| hypothetical protein Rcas_1048 [Roseiflexus castenholzii DSM 13941]
Length = 146
Score = 41.0 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMN---LSVQDIDIATTI-LPDRVMRIFSK 65
D+I IL + + + GG D+L+ D+DIA V + +
Sbjct: 24 MKAQDVIEILRVFEHHGIEVHVDGGWAVDALLGQQTRPHADLDIAIQHKDAPLVRALLAA 83
Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRY 104
++ IP S+ ++ ++ I G +
Sbjct: 84 QGFREIPRDDSWECNVVLEDERGRQIDIHSYTFDAAGNH 122
>gi|311900471|dbj|BAJ32879.1| hypothetical protein KSE_71230 [Kitasatospora setae KM-6054]
Length = 163
Score = 41.0 bits (94), Expect = 0.38, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGA-VRDSLMN---LSVQDIDI 50
D+D++ +L L + I GG + D+L+ +D+D+
Sbjct: 1 MRDADVLEVLDALRAAGAQVWIAGGWGI-DALLREQTRPHRDLDL 44
>gi|91228642|ref|ZP_01262559.1| polyA polymerase [Vibrio alginolyticus 12G01]
gi|91187825|gb|EAS74140.1| polyA polymerase [Vibrio alginolyticus 12G01]
Length = 318
Score = 41.0 bits (94), Expect = 0.38, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 8/241 (3%)
Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
D+ RRDFTIN++Y + + DY G+ DL +R I+ IGD R ED +R+LR RF
Sbjct: 11 DAERRDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVRFA 70
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
+I+ D L + S R++ E KLL++ + L + +F+++
Sbjct: 71 VKLDF-DIEEDTAAPIEHMAPLLGDIPSARLFEESLKLLQSGHGLETYHLLREYNLFQQL 129
Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRY 293
F + + S EQ+ + +DS +R +M +
Sbjct: 130 FPTIAAHFTEDYSS--HTEQMLDLVLDSTDMRIEDGKRINPAFMFAAMLWYPLCAKADEL 187
Query: 294 FLISFFNCNFNQKTLS---IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350
S + E + + + L L + +++
Sbjct: 188 MEERNLGHYDAIMEASNIILDEQVRTIAIPRRHTATIREIWQLQLRLPRRNGKRAFRLME 247
Query: 351 V 351
+
Sbjct: 248 L 248
>gi|254230318|ref|ZP_04923705.1| poly(A) polymerase [Vibrio sp. Ex25]
gi|151937142|gb|EDN56013.1| poly(A) polymerase [Vibrio sp. Ex25]
Length = 352
Score = 41.0 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 85/239 (35%), Gaps = 4/239 (1%)
Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174
D+ RRDFTIN++Y + + DY G+ DL +R I+ IGD R ED +R+LR RF
Sbjct: 45 DAERRDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVRFA 104
Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234
+I+ D L + S R++ E KLL++ + L + +F+++
Sbjct: 105 VKLDF-DIEEDTAAPIEHMAPLLGDIPSARLFEESLKLLQSGHGLETYHLLREYNLFQQL 163
Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS--LPREIR 292
F + + S E + + +
Sbjct: 164 FPTIAAHFTEDYSSYTEQMLDLVLDSTDMRIEDGKRINPAFMFAAMLWYPLCAKADELME 223
Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351
+ ++ + + E + + + L L + ++++
Sbjct: 224 ERNLGHYDAIMEASNIILDEQVRTIAIPRRHTATIREIWQLQLRLPRRNGKRAFRLMEL 282
>gi|327402564|ref|YP_004343402.1| hypothetical protein Fluta_0559 [Fluviicola taffensis DSM 16823]
gi|327318072|gb|AEA42564.1| hypothetical protein Fluta_0559 [Fluviicola taffensis DSM 16823]
Length = 461
Score = 41.0 bits (94), Expect = 0.40, Method: Composition-based stats.
Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+ G+ +++ G PGK + + H ++ +LS+ ++ + L +
Sbjct: 1 MKIDGNTIIELGFRPGKWFKDAIEHI------NTNELSETEMLNYLEQY 43
>gi|299542055|ref|ZP_07052374.1| metallophosphoesterase ykuE [Lysinibacillus fusiformis ZC1]
gi|298725478|gb|EFI66123.1| metallophosphoesterase ykuE [Lysinibacillus fusiformis ZC1]
Length = 271
Score = 40.6 bits (93), Expect = 0.42, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQD-IDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79
+L + ++ IVG + D LM + +D +DIAT LPD + ++ R ++ T ++Y
Sbjct: 141 VLERNGERLAIVG--IEDPLMGRTTEDMLDIATAYLPDDMFKLLLAHRPEIFNTYVNYHI 198
Query: 80 IKIICRKKY 88
+ +
Sbjct: 199 NLVFSGHAH 207
>gi|212696601|ref|ZP_03304729.1| hypothetical protein ANHYDRO_01141 [Anaerococcus hydrogenalis DSM
7454]
gi|212676332|gb|EEB35939.1| hypothetical protein ANHYDRO_01141 [Anaerococcus hydrogenalis DSM
7454]
Length = 48
Score = 40.6 bits (93), Expect = 0.43, Method: Composition-based stats.
Identities = 5/39 (12%), Positives = 16/39 (41%)
Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+ G GK++G +L ++ + ++ ++
Sbjct: 1 MDLGFEEGKELGMVLKEVYGLVMDEKLVNKKSEIIKYIK 39
>gi|66824633|ref|XP_645671.1| hypothetical protein DDB_G0271378 [Dictyostelium discoideum AX4]
gi|60473880|gb|EAL71819.1| hypothetical protein DDB_G0271378 [Dictyostelium discoideum AX4]
Length = 542
Score = 40.6 bits (93), Expect = 0.44, Method: Composition-based stats.
Identities = 62/410 (15%), Positives = 115/410 (28%), Gaps = 73/410 (17%)
Query: 3 SIVQHKWFHDSDLINILSLL-------NKGEDKSCIVGGAVRDSLMNLS----------- 44
SI + + L N+ + + + GG VRD L++
Sbjct: 35 SIPTKNIQISPEENKLFDFLKNILIFNNRNDIELRVAGGWVRDKLLDNQKQQQPQPQPQP 94
Query: 45 -----------------VQDIDIATTIL-----PDRV---MRIFSKTRYKVIPTSISY-G 78
+ + F K K P +
Sbjct: 95 QQQQQIKDIDIDIDIALSN-----ISGTNFIKLIEEFKINKESFKKYLIKRNPEKSKHLE 149
Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138
T I D +LR + LRRD TIN+L+ + I+
Sbjct: 150 TASINIHGFQIDFNSLR--------------------NCLRRDLTINSLFYNLNTLKIED 189
Query: 139 VGGL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196
G +DL N I+ + +L+D LR R RF + + I+
Sbjct: 190 HSGYGLSDLENSIIRTPLEPLKTLLDDPLRAFRVIRFASRFQGFQIEQQLYNTI--KFNL 247
Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256
K L S ++ E N + + + L I D++ E +
Sbjct: 248 NKQLISNKVSKERIYKEFHLMMSNKSSVIQSIDYLIDTGLINSIIDFDKIINDHEIIKEL 307
Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316
K L+ ++ + + ++ ++ + + KT+ +
Sbjct: 308 FKKSLKYLKILINQNNNNNDNLFNIDFYKCCIFLPFFIDAHLGFKDNTSKTIKSLINYQF 367
Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366
G + I+ L L + N+ + ++I K L
Sbjct: 368 STNTGSTLNISLLFNNLISSFLNINNDTNNNTNNNTNNINQLKDFKLYLN 417
>gi|32169733|emb|CAD90573.1| putative poly(A) polymerase I [Pseudoalteromonas haloplanktis
TAC125]
Length = 323
Score = 40.6 bits (93), Expect = 0.47, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 112 DWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170
+ D+ RRDF+INALY + DY GL ++ + I+ IGD R ED +R+LR
Sbjct: 14 SIEEDAERRDFSINALYYSINDFCIYDYANGLAAIKAKQIELIGDPETRYREDPVRMLRA 73
Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230
RF I + L + R++ EI KL + + G+
Sbjct: 74 VRFATKLDM-KIAPNSEKPMTALASLLDNIPPARLFEEILKLFLNGKAQANYLMLRKYGL 132
Query: 231 FKEIFLDVQEI 241
F +F ++ I
Sbjct: 133 FNSLFPELNRI 143
>gi|298713638|emb|CBJ33686.1| n/a [Ectocarpus siliculosus]
Length = 1023
Score = 40.2 bits (92), Expect = 0.67, Method: Composition-based stats.
Identities = 16/239 (6%), Positives = 45/239 (18%), Gaps = 11/239 (4%)
Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRD---FTINALYADQQGKVIDYVGGLNDLRN 147
R T R+ + D F N A D +
Sbjct: 539 YACARHYPDTHDRHCFARNYACARHYPDTHDRHCFARNYACARHYPDTHDRHCFARNYAC 598
Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--------KNIDSDGLVASIKAKKGLKI 199
H +Y + + D+ + G +
Sbjct: 599 ARHYPDTHDRHCFARNYACARHYPDTHDRHCFARNYAGARHYPDAYDDHTFARNYAGPYV 658
Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259
+ A + + + + ++
Sbjct: 659 CRWNYAGPYVCWWYYAGPYVCRWYYAGPYVCWWHYTGPCRRSWWRPWYADPYDDRRNAGP 718
Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318
+ + + + R + ++ ++ + + P + +Y
Sbjct: 719 YVCWWYYAGPYVCRWYYAGPYVCWWHYTGPYRRSWWRPWYADPYDDRRNAGPYVCWWYY 777
>gi|149369406|ref|ZP_01889258.1| hypothetical protein SCB49_06262 [unidentified eubacterium SCB49]
gi|149356833|gb|EDM45388.1| hypothetical protein SCB49_06262 [unidentified eubacterium SCB49]
Length = 470
Score = 40.2 bits (92), Expect = 0.67, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
+TG +++ G GK + L+H + LS+ ++ L
Sbjct: 7 ITGHTLIELGFRSGKWMKEALIHI------NENNLSEAEMLAYLE 45
>gi|289976602|gb|ADD21647.1| conserved hypothetical protein [Caulobacter phage Cd1]
Length = 183
Score = 39.8 bits (91), Expect = 0.73, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 19 LSLLNKGEDKSCIV-GGAVRDSLMNLSVQDIDIATT 53
L+ + +V GGA+RD + +DID+
Sbjct: 2 LNQIRAAAPARYVVAGGAIRDYWLGFEPKDIDVFVD 37
>gi|213614454|ref|ZP_03371280.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E98-2068]
Length = 242
Score = 39.8 bits (91), Expect = 0.74, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Query: 112 DWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170
+ D+ RRDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR
Sbjct: 16 SIEEDAQRRDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRA 75
Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230
RF A I + + L + R++ E KLL+A N + +
Sbjct: 76 VRFAAKLNM-RISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHL 134
Query: 231 FKEIFLDV 238
F+ +F +
Sbjct: 135 FQPLFPTI 142
>gi|14521962|ref|NP_127439.1| V-type ATP synthase subunit C [Pyrococcus abyssi GE5]
gi|12585507|sp|Q9UXU5|VATC_PYRAB RecName: Full=V-type ATP synthase subunit C; AltName: Full=V-ATPase
subunit C
gi|5459182|emb|CAB50668.1| atpC archaeal/vacuolar-type H+-transporting ATP synthase, subunit C
[Pyrococcus abyssi GE5]
Length = 370
Score = 39.8 bits (91), Expect = 0.74, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL-SDIIHWKKP---------LFPLTGD 368
G++ +IA + + + Y N++ + + DI P + +
Sbjct: 214 RKGEEKIIASEFVNMLIDYTNISTLLRAKLSSLAQEDIRKLIIPGGTLSKSTIEAMINSE 273
Query: 369 DV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH-LLRKLIASSQ 416
DV + G G K G +L ++ + + + + L +LR++ SQ
Sbjct: 274 DVVMALGELEGTKYGEVLREVREAVESGNIESVEIALRKYILRRMKELSQ 323
>gi|115373999|ref|ZP_01461289.1| polynucleotide adenylyltransferase, putative [Stigmatella
aurantiaca DW4/3-1]
gi|115369006|gb|EAU67951.1| polynucleotide adenylyltransferase, putative [Stigmatella
aurantiaca DW4/3-1]
Length = 212
Score = 39.8 bits (91), Expect = 0.88, Method: Composition-based stats.
Identities = 31/199 (15%), Positives = 60/199 (30%), Gaps = 13/199 (6%)
Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI---SYGTIKIICRKK---YFDITTL 94
M + QD+DIA + V ++ + P +G + D + L
Sbjct: 1 MGVPTQDVDIAVDRSMEEVHQLLRHAYPDIDPVRSRLDRFG--MMCWGDDASGGVDFSFL 58
Query: 95 RSD---LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK--VIDYVGGLNDLRNRT 149
RS D R + D + D+L RDF++NA Y ++D +G +
Sbjct: 59 RSPGDIQNDDMRTTSFIPRGDVRDDALMRDFSVNAFYFACHEGGVLLDPLGCGLEDVQGR 118
Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209
I + + Y R +F ++ + + +
Sbjct: 119 ILRLITHPRVLETSYRITFRILQFICRGYTPAANALEHLERYADHDIQGTGARLLGFVNS 178
Query: 210 NKLLEAKNPLNAIVHMYNG 228
+ + +Y
Sbjct: 179 HFGSQHGQREEFKQRLYAC 197
>gi|330719088|ref|ZP_08313688.1| hypothetical protein LfalK3_07513 [Leuconostoc fallax KCTC 3537]
Length = 47
Score = 39.8 bits (91), Expect = 0.91, Method: Composition-based stats.
Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 371 VKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411
+ + I P G ++G +L ++ + ++ L + R+
Sbjct: 1 MAHHIVPAGPQLGQMLRRITEQVVTGELINDRQVLMNYARRW 42
>gi|167583628|ref|YP_001671818.1| hypothetical protein phi32_73 [Enterobacteria phage phiEco32]
gi|164375466|gb|ABY52874.1| hypothetical protein phi32_73 [Enterobacteria phage phiEco32]
Length = 437
Score = 39.4 bits (90), Expect = 0.95, Method: Composition-based stats.
Identities = 27/208 (12%), Positives = 63/208 (30%), Gaps = 25/208 (12%)
Query: 31 IVGGAVRDSLM-NLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89
I GGAVRD+++ N + DIDI I + T I + ++
Sbjct: 43 ITGGAVRDAVLNNRAPHDIDI----------FIVRGQAPRTRDTFIRH--------DQWQ 84
Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149
D+ + + + ++D + SL + T A D + +
Sbjct: 85 DL-----GREVESNVKEWLESQDIEYSSLLAEATNEAYAEGSLLTFTDIIEFQWNGVRIQ 139
Query: 150 IKFIGDAH-HRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208
F +++++ + R + + + + +
Sbjct: 140 FMFNYPTSIEEVMDNFPMMCRGAMTLDNLFMTPHGYLSMTSPCPVVVSAREIKYVHKKWP 199
Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFL 236
+++L + A+ +M +
Sbjct: 200 NSQVLRFSSTSAALQYMAHSRYLPTPQP 227
>gi|167565001|ref|ZP_02357917.1| hypothetical protein BoklE_20795 [Burkholderia oklahomensis
EO147]
Length = 182
Score = 39.4 bits (90), Expect = 0.98, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT 52
+DL N+++ + + + I GGA RD L V+DID+ T
Sbjct: 1 MKLTDLQNLVTEIRRVYPDAVIAGGAPRDILHGKPVKDIDVMT 43
>gi|73945502|ref|XP_849493.1| PREDICTED: similar to Zinc phosphodiesterase ELAC protein 1
(Ribonuclease Z 1) (RNase Z 1) (tRNase Z 1) (tRNA 3
endonuclease 1) (ElaC homolog protein 1) (Deleted in
Ma29) isoform 2 [Canis familiaris]
Length = 374
Score = 39.0 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L + G+PPG G + +++ +S +D+
Sbjct: 200 LNAQKLKDLGVPPGPAYGKLKNGI-SVVLDNGVTISPQDVLK 240
>gi|171915989|ref|ZP_02931459.1| hypothetical protein VspiD_32500 [Verrucomicrobium spinosum DSM
4136]
Length = 530
Score = 39.0 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 365 LTGDDVVKYGIPPGKKVGNIL-VHCKQEWINSSFQLSQEDLHHLLRK 410
L G+D ++ G PG ++G L + E L LLR+
Sbjct: 4 LNGEDFLEAGWAPGPQIGQALVKAAEYE--AKGI-TDPAYLLKLLRR 47
>gi|160871778|ref|ZP_02061910.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Rickettsiella grylli]
gi|159120577|gb|EDP45915.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Rickettsiella grylli]
Length = 308
Score = 39.0 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 42/255 (16%), Positives = 93/255 (36%), Gaps = 5/255 (1%)
Query: 112 DWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170
+ D+ RRDFT+NALY + ++DY GGL D+ N+ ++ IG+ R ED +R+LR
Sbjct: 10 TIEEDAWRRDFTLNALYYNIADFSLVDYCGGLADIHNKIVRIIGEPRLRYQEDPVRLLRA 69
Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230
RF + +D + L+ +S R++ E+ KL + + +
Sbjct: 70 IRFAGKLNFQ-LDKATAEPIPQLAPLLRYVSPARLFDEVLKLFHHGQAEKNYQLLQHYHL 128
Query: 231 FKEIFLDVQ---EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287
+E+F + D+L +I + + L + ++ ++
Sbjct: 129 LQELFPLPERESNDDTDKLLTLICKNTDRRIREKKTVSPAFLFAVFLWPTVKVKTQQLIA 188
Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347
+ R+ K + + + + ++ + ++ +
Sbjct: 189 QQNPRFVAHQQAVNYALNKQQKMITLSRRYSTVIREIWDLQHRLLKRQPFMLHRLIHHPR 248
Query: 348 ILQVLSDIIHWKKPL 362
++ +
Sbjct: 249 FRAAFDFLLLRTEIK 263
>gi|170681340|ref|YP_001743362.1| hypothetical protein EcSMS35_1304 [Escherichia coli SMS-3-5]
gi|170519058|gb|ACB17236.1| conserved hypothetical protein [Escherichia coli SMS-3-5]
Length = 250
Score = 39.0 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDS-LMNLS--VQDIDIATTILPDRVMRIFSKTR 67
+L L + I GG VRD L + D+DI + + R ++
Sbjct: 23 EHKKARVLLDTL-ACSCPAWIFGGMVRDLGLFGVEGFSSDLDIVIGRSREELFRTLAELP 81
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDL 98
K + +G I+ FDI L
Sbjct: 82 VKQLR-FNKFGGIRFRYHDFEFDIWNLNETW 111
>gi|297275312|ref|XP_001099883.2| PREDICTED: NAD-dependent malic enzyme, mitochondrial [Macaca
mulatta]
Length = 915
Score = 38.7 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L + G+PPG G + + + +S +D+
Sbjct: 752 LNAQKLKDLGVPPGPAYGKLKNGI-SVVLENGVTISPQDVLK 792
>gi|301762826|ref|XP_002916832.1| PREDICTED: zinc phosphodiesterase ELAC protein 1-like [Ailuropoda
melanoleuca]
gi|281342229|gb|EFB17813.1| hypothetical protein PANDA_004947 [Ailuropoda melanoleuca]
Length = 363
Score = 38.7 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L + G+PPG G + + + +S +D+
Sbjct: 200 LNAQKLKDLGVPPGPAYGKLKNGI-SVVLENGVTISPQDVLK 240
>gi|167382995|ref|XP_001736363.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901311|gb|EDR27399.1| hypothetical protein EDI_091010 [Entamoeba dispar SAW760]
Length = 1628
Score = 38.7 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 30/286 (10%), Positives = 69/286 (24%), Gaps = 13/286 (4%)
Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188
Q N + +Y+ F + L
Sbjct: 921 YFQTIFYHHMNEEKNISIYEFDVKQNPQSFKTWWNYVEYFDESHFQSKIIIFQRALHELP 980
Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248
S K + K+ ++ + ++ ++ L +
Sbjct: 981 GSYKLWYHYLQTIITNARNSEINTEIRKSVNEGFE---ESLVYMNKMPVIWKLYIEWLIE 1037
Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308
E Q+ SL + + K ++ P +
Sbjct: 1038 NREITQMRRVFDRSLQSLPIGQHNELWKVVMKFVITLDTP----LLFEKLVLRHILLDRG 1093
Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368
I E ++ G++ LK+ + + ++ +
Sbjct: 1094 MIGEYIQICKKKGERYYPLALKLLIQNVSLHSFRMKKEEYDFMIHIFESLTVQDKGIDIQ 1153
Query: 369 DVVKYGIPPGK------KVGNILVHCKQEWINSSFQLSQEDLHHLL 408
D++K GI VG L K+ I + + +E + ++
Sbjct: 1154 DIMKKGIQEFPEDAGSLWVGMSLYEIKEGRIETGIAILEEAMDEVI 1199
>gi|149721103|ref|XP_001499894.1| PREDICTED: similar to Zinc phosphodiesterase ELAC protein 1
(Ribonuclease Z 1) (RNase Z 1) (tRNase Z 1) (tRNA 3
endonuclease 1) (ElaC homolog protein 1) (Deleted in
Ma29) [Equus caballus]
Length = 363
Score = 38.7 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L + G+PPG G + + + +S +D+
Sbjct: 200 LNAQKLKDLGVPPGPAYGKLKNGI-SVVLENGVTISPQDVLK 240
>gi|114052516|ref|NP_001039792.1| zinc phosphodiesterase ELAC protein 1 [Bos taurus]
gi|109893820|sp|Q29RY4|RNZ1_BOVIN RecName: Full=Zinc phosphodiesterase ELAC protein 1; AltName:
Full=ElaC homolog protein 1; AltName: Full=Ribonuclease
Z 1; Short=RNase Z 1; AltName: Full=tRNA 3 endonuclease
1; AltName: Full=tRNase Z 1
gi|88758635|gb|AAI13357.1| ElaC homolog 1 (E. coli) [Bos taurus]
gi|296473700|gb|DAA15815.1| elaC homolog 1 [Bos taurus]
Length = 363
Score = 38.7 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L + G+PPG G + + + +S +D+
Sbjct: 200 LNAQKLKDLGVPPGPAYGKLKNGI-SVVLENGVTISPQDVLK 240
>gi|10437225|dbj|BAB15021.1| unnamed protein product [Homo sapiens]
gi|62898746|dbj|BAD97227.1| elaC homolog 1 variant [Homo sapiens]
Length = 363
Score = 38.7 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L + G+PPG G + + + +S +D+
Sbjct: 200 LNAQKLKDLGVPPGPAYGKLKNGI-SVVLENGVTISPQDVLK 240
>gi|154249651|ref|YP_001410476.1| MiaB-like tRNA modifying enzyme [Fervidobacterium nodosum Rt17-B1]
gi|154153587|gb|ABS60819.1| MiaB-like tRNA modifying enzyme [Fervidobacterium nodosum Rt17-B1]
Length = 421
Score = 38.7 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 24/191 (12%), Positives = 58/191 (30%), Gaps = 31/191 (16%)
Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304
++ Q I + +L ++ ++ L + ++ F N N
Sbjct: 45 KVRQTIRHIRKENPDSKIILTGCYTQIPRESSEYETLGVDLVLGNSEKKSIVKFLNENGI 104
Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFL----------------ALHYNNLTHQDTCFI 348
+ + Y + + + F+ +L + + +
Sbjct: 105 YSKIDYWREDDISYEMVKDSIAERSRAFIKVEDGCNNGCTYCVIRSLRGTRIRSKPIEVV 164
Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW--INSSFQLS------ 400
++ +I K +TG + G GK +G L E IN F++
Sbjct: 165 IKEAEQLITKKHKELVITG---LNLG-KYGKDIGTNLAKLLNEVSKINGDFRIRLSSINP 220
Query: 401 ---QEDLHHLL 408
++L +++
Sbjct: 221 EDLDDELINII 231
>gi|114673177|ref|XP_001155672.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 1 [Pan
troglodytes]
gi|332849952|ref|XP_003315964.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 2 [Pan
troglodytes]
Length = 363
Score = 38.7 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L + G+PPG G + + + +S +D+
Sbjct: 200 LNAQKLKDLGVPPGPAYGKLKNGI-SVVLENGVTISPQDVLK 240
>gi|167755995|ref|ZP_02428122.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
gi|167703987|gb|EDS18566.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
Length = 443
Score = 38.7 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 26/276 (9%), Positives = 83/276 (30%), Gaps = 21/276 (7%)
Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206
I+ + + + L + I + + + LKI S+
Sbjct: 72 WSEIEPYFTNSLVVAHNAVFDLSVISACLQRYDLPIFPIFYTCTYRISRALKIPSNSYKL 131
Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266
++++ + + + + ++E +L+ L Q ++ + + D+
Sbjct: 132 NDLSSYYHVTLDNHHNALADSKACMEIFYYLLKEPNLETLDQYVKCFEPTKGNKDNKKYL 191
Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326
VLI + K + + + + + + K Y+ + +
Sbjct: 192 EVLIGLLTGIGFDNYLNKKEISFLNNWLTKNQLPYEYANIVKELKAVLKNEYITHYQYLH 251
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN--- 383
++ + + +L I + + D++++ K +
Sbjct: 252 ILNELQYMKSIKAKNIRSLYEFMAILEGISCDEV----INDDEIMELN----KWMKENEQ 303
Query: 384 ---------ILVHCKQEWINSSF-QLSQEDLHHLLR 409
IL ++ I+ + ++L + ++
Sbjct: 304 FKGTYPFNRILNKLEKIIIDKQISTIVTDELLYYIK 339
>gi|8922122|ref|NP_061166.1| zinc phosphodiesterase ELAC protein 1 [Homo sapiens]
gi|41017799|sp|Q9H777|RNZ1_HUMAN RecName: Full=Zinc phosphodiesterase ELAC protein 1; AltName:
Full=Deleted in Ma29; AltName: Full=ElaC homolog protein
1; AltName: Full=Ribonuclease Z 1; Short=RNase Z 1;
AltName: Full=tRNA 3 endonuclease 1; AltName:
Full=tRNase Z 1
gi|10946491|gb|AAG24917.1|AF308695_1 ELAC1 [Homo sapiens]
gi|8574425|dbj|BAA96799.1| D29 [Homo sapiens]
gi|15779120|gb|AAH14624.1| ElaC homolog 1 (E. coli) [Homo sapiens]
gi|119583388|gb|EAW62984.1| elaC homolog 1 (E. coli), isoform CRA_b [Homo sapiens]
gi|123985170|gb|ABM83711.1| elaC homolog 1 (E. coli) [synthetic construct]
gi|123998805|gb|ABM87031.1| elaC homolog 1 (E. coli) [synthetic construct]
Length = 363
Score = 38.7 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L + G+PPG G + + + +S +D+
Sbjct: 200 LNAQKLKDLGVPPGPAYGKLKNGI-SVVLENGVTISPQDVLK 240
>gi|297702621|ref|XP_002828271.1| PREDICTED: zinc phosphodiesterase ELAC protein 1-like [Pongo
abelii]
Length = 363
Score = 38.7 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L + G+PPG G + + + +S +D+
Sbjct: 200 LNAQKLKDLGVPPGPAYGKLKNGI-SVVLENGVTISPQDVLK 240
>gi|332236758|ref|XP_003267566.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 1
[Nomascus leucogenys]
gi|332236760|ref|XP_003267567.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 2
[Nomascus leucogenys]
Length = 363
Score = 38.7 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L + G+PPG G + + + +S +D+
Sbjct: 200 LNAQKLKDLGVPPGPAYGKLKNGI-SVVLENGVTISPQDVLK 240
>gi|237733311|ref|ZP_04563792.1| 3'-5' exonuclease [Mollicutes bacterium D7]
gi|229383692|gb|EEO33783.1| 3'-5' exonuclease [Coprobacillus sp. D7]
Length = 443
Score = 38.7 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 24/249 (9%), Positives = 77/249 (30%), Gaps = 21/249 (8%)
Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233
+ I + + + LKI S+ ++++ + + +
Sbjct: 99 CLQRYDLPIFPIFYTCTYRISRALKIPSNSYKLNDLSSYYHVTLDNHHNALADSKACMEI 158
Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293
+ ++E +L+ L Q ++ + + D+ VLI + K + +
Sbjct: 159 FYYLLKEPNLETLDQYVKCFEPTKGNKDNKKYLEVLIGLLTGIGFDNYLNKKEISFLNNW 218
Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353
+ + + + K Y+ + + ++ + + +L
Sbjct: 219 LTKNQLPYEYANIVKELKAVLKNEYITHYQYLHILNELQYMKSIKAKNIRSLYEFMAILE 278
Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGN------------ILVHCKQEWINSSF-QLS 400
I + + D++++ K + IL ++ I+ +
Sbjct: 279 GISCDEV----INDDEIMELN----KWMKENEQFKGTYPFNRILNKLEKIIIDKQISTIV 330
Query: 401 QEDLHHLLR 409
++L + ++
Sbjct: 331 TDELLYYIK 339
>gi|217031985|ref|ZP_03437486.1| hypothetical protein HPB128_187g12 [Helicobacter pylori B128]
gi|216946295|gb|EEC24901.1| hypothetical protein HPB128_187g12 [Helicobacter pylori B128]
Length = 109
Score = 38.7 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381
D F AL + + ++ +KK L G+ + +++
Sbjct: 5 DLEPFNLALDFYALENPKHALKIKRLLKEIFDSNEPFKKEHLALKGNALQSLDYQH-QQI 63
Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLR 409
G IL C I L L++
Sbjct: 64 GEILNACLNLVIAHPKNN---ALEWLIK 88
>gi|255526786|ref|ZP_05393686.1| metal dependent phosphohydrolase [Clostridium carboxidivorans P7]
gi|296187938|ref|ZP_06856330.1| uncharacterized domain HDIG containing protein [Clostridium
carboxidivorans P7]
gi|255509514|gb|EET85854.1| metal dependent phosphohydrolase [Clostridium carboxidivorans P7]
gi|296047064|gb|EFG86506.1| uncharacterized domain HDIG containing protein [Clostridium
carboxidivorans P7]
Length = 376
Score = 38.7 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 28/205 (13%), Positives = 69/205 (33%), Gaps = 13/205 (6%)
Query: 222 IVHMYNGGIFKEIFLDVQ-EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280
+ Y I+ + E+ L ++ + L+ ++ +D +I
Sbjct: 117 LKREYLKCNKGIIYPSFKFELGHPPLIHPKYKNEIINSNGEGGLKRVLEKYKRDSINIPV 176
Query: 281 MAKKFSLPREIRYFLISFFNC-NFNQKTLSIPEIKKLFY-------LYGDKVMIAKLKIF 332
K + + R +FN T+ Y + ++V L+I
Sbjct: 177 CDKSILMDMDTRQDYDKLLEYYHFNSPTIEECYCILGLYDVPYNIIRHCEEVAKIALEIL 236
Query: 333 LALHYNNLT-HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391
L+ +++ +L D+ +K + + G KVG I+
Sbjct: 237 KKLNERGCNFNKNVMRASALLHDLARNQKDHAEVGAKILKDLGYE---KVGKIISTHMDI 293
Query: 392 WINSSFQLSQEDLHHLLRKLIASSQ 416
++ + +++ ++ +L KL+ +
Sbjct: 294 EVHENSPITENEILYLADKLVKEDK 318
>gi|282880661|ref|ZP_06289365.1| hypothetical protein HMPREF9019_1787 [Prevotella timonensis CRIS
5C-B1]
gi|281305470|gb|EFA97526.1| hypothetical protein HMPREF9019_1787 [Prevotella timonensis CRIS
5C-B1]
Length = 288
Score = 38.3 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 16/88 (18%)
Query: 1 MVSIVQHKWFHDSDLINILSLLNKG----EDKSCIVGGAVRD---SLMNLSVQ-----DI 48
M + + L L+ L K + IVG RD ++N+ DI
Sbjct: 1 MEYKIDKAKLANDPLYETLAALQKSLEQLNLQLYIVGACARDIAMIVLNVPASARRTIDI 60
Query: 49 DIATTIL----PDRVMRIFSKTRYKVIP 72
D+A + D+V+ + + +K P
Sbjct: 61 DVAIALDNWEMFDKVLELLQQNYFKKDP 88
>gi|150402945|ref|YP_001330239.1| ATPase central domain-containing protein [Methanococcus maripaludis
C7]
gi|150033975|gb|ABR66088.1| AAA ATPase central domain protein [Methanococcus maripaludis C7]
Length = 371
Score = 38.3 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 354 DIIHWKKPLFPLTGD-DVVKY-----GIPPGKKVGNI-LV-HCKQEWINSSFQLSQEDLH 405
I+ P+T + D+ KY G+ G+ + L + + + + ++DL
Sbjct: 296 KILELYVKKMPITVNADLKKYVEKTKGM-NGRTIKEKFLKPALHKAILEDNESIEEKDLD 354
Query: 406 HLLRKLI 412
+++KL+
Sbjct: 355 EIIKKLV 361
>gi|307104941|gb|EFN53192.1| hypothetical protein CHLNCDRAFT_137012 [Chlorella variabilis]
Length = 333
Score = 38.3 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 362 LFPLTGDDVVK-YGIPPG-KKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410
L G V+ G+ G ++G +L + + ++ LR+
Sbjct: 274 KPLLDGKQVMAAMGMTAGGPQLGRLLAAAVDWQLAHP-AGTADECREWLRR 323
>gi|225851036|ref|YP_002731270.1| poly A polymerase [Persephonella marina EX-H1]
gi|225645692|gb|ACO03878.1| poly A polymerase [Persephonella marina EX-H1]
Length = 43
Score = 38.3 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412
I P KVG I + I + +++ +++L
Sbjct: 6 IEPSPKVGYIKDKLLKAQIEGKIR-TKQQAVEFIKELA 42
>gi|316934303|ref|YP_004109285.1| hypothetical protein Rpdx1_2971 [Rhodopseudomonas palustris DX-1]
gi|315602017|gb|ADU44552.1| hypothetical protein Rpdx1_2971 [Rhodopseudomonas palustris DX-1]
Length = 200
Score = 38.3 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 29 SCIVGGAVRDSLMNLSVQDID--IATTILPDRVMRIFS 64
+ I GGA+RD V+DID + + + +
Sbjct: 24 AFIAGGALRDLDNGRPVKDIDVFFTDEMNWHEIDKALA 61
>gi|110639282|ref|YP_679491.1| hypothetical protein CHU_2904 [Cytophaga hutchinsonii ATCC 33406]
gi|110281963|gb|ABG60149.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
Length = 470
Score = 38.3 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL-SQEDLHHLLRKLI 412
GDD+ G GK + +L I +++ +E++ +L ++++
Sbjct: 2 NGDDLKAIGYAEGKVIRMVLD-----IIENNYASQEKEEVLNLFKQVV 44
>gi|332667983|ref|YP_004450771.1| hypothetical protein Halhy_6076 [Haliscomenobacter hydrossis DSM
1100]
gi|332336797|gb|AEE53898.1| protein of unknown function UPF0027 [Haliscomenobacter hydrossis
DSM 1100]
Length = 467
Score = 38.3 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 18/68 (26%)
Query: 362 LFPLTGDDVVKYGIPPGKKVGNILV---------------HCKQEWINSSFQLSQEDLHH 406
+ G +++K G P G +G + Q I + S
Sbjct: 3 KIQIRGKELIKMGYPEGPAIGLCINLIPKHYKRHTQAQVDELLQAIIANP---SDYAEDA 59
Query: 407 LLRKLIAS 414
+L +++ +
Sbjct: 60 VLGRIVEA 67
>gi|24113263|ref|NP_707773.1| hypothetical protein SF1927 [Shigella flexneri 2a str. 301]
gi|30063331|ref|NP_837502.1| hypothetical protein S2019 [Shigella flexneri 2a str. 2457T]
gi|24052265|gb|AAN43480.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30041583|gb|AAP17311.1| hypothetical protein S2019 [Shigella flexneri 2a str. 2457T]
gi|281601325|gb|ADA74309.1| hypothetical protein SFxv_2151 [Shigella flexneri 2002017]
gi|313650092|gb|EFS14505.1| hypothetical protein SF2457T_1399 [Shigella flexneri 2a str. 2457T]
gi|332756024|gb|EGJ86377.1| hypothetical protein SF434370_2133 [Shigella flexneri 4343-70]
gi|332757240|gb|EGJ87577.1| hypothetical protein SF274771_2299 [Shigella flexneri 2747-71]
gi|332757438|gb|EGJ87773.1| hypothetical protein SFK671_2342 [Shigella flexneri K-671]
gi|333003354|gb|EGK22900.1| hypothetical protein SFK218_2731 [Shigella flexneri K-218]
gi|333017618|gb|EGK36930.1| hypothetical protein SFK304_2491 [Shigella flexneri K-304]
Length = 131
Score = 37.9 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDS-LMNLS--VQDIDIATTILPDRVMRIFSKTR 67
+L L + I GG VRD L + D+DI + + + ++
Sbjct: 23 EHKKARVLLDTL-ACSCPARIFGGMVRDLGLYGVDGFSSDLDIVIGRSREELFQTLAELP 81
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITD 101
K + +G I+ FDI L
Sbjct: 82 VKQLR-FNKFGGIRFRYHDFEFDIWNLNETWAFQ 114
>gi|146302472|ref|YP_001197063.1| hypothetical protein Fjoh_4745 [Flavobacterium johnsoniae UW101]
gi|146156890|gb|ABQ07744.1| protein of unknown function UPF0027 [Flavobacterium johnsoniae
UW101]
Length = 473
Score = 37.9 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 365 LTGDDVVKYGIPPGKKVGNILV 386
+ G D+++ G P GK +G L
Sbjct: 5 INGTDILELGFPEGKIIGIALK 26
>gi|10946495|gb|AAG24919.1|AF308697_1 ELAC1 [Mus musculus]
Length = 362
Score = 37.9 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L + G+PPG G + +++ +S +D+
Sbjct: 199 LNAQKLRDLGVPPGPAYGKLKNGI-SVVLDNGVTISPQDVLK 239
>gi|31981497|ref|NP_444485.2| zinc phosphodiesterase ELAC protein 1 [Mus musculus]
gi|41017770|sp|Q8VEB6|RNZ1_MOUSE RecName: Full=Zinc phosphodiesterase ELAC protein 1; AltName:
Full=ElaC homolog protein 1; AltName: Full=Ribonuclease
Z 1; Short=RNase Z 1; AltName: Full=tRNA 3 endonuclease
1; AltName: Full=tRNase Z 1
gi|148677608|gb|EDL09555.1| elaC homolog 1 (E. coli), isoform CRA_b [Mus musculus]
Length = 362
Score = 37.9 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L + G+PPG G + +++ +S +D+
Sbjct: 199 LNAQKLRDLGVPPGPAYGKLKNGI-SVVLDNGVTISPQDVLK 239
>gi|332766609|gb|EGJ96813.1| hypothetical protein SF293071_2254 [Shigella flexneri 2930-71]
Length = 129
Score = 37.9 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDS-LMNLS--VQDIDIATTILPDRVMRIFSKTR 67
+L L + I GG VRD L + D+DI + + + ++
Sbjct: 21 EHKKARVLLDTL-ACSCPARIFGGMVRDLGLYGVDGFSSDLDIVIGRSREELFQTLAELP 79
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITD 101
K + +G I+ FDI L
Sbjct: 80 VKQLR-FNKFGGIRFRYHDFEFDIWNLNETWAFQ 112
>gi|145535257|ref|XP_001453367.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421078|emb|CAK85970.1| unnamed protein product [Paramecium tetraurelia]
Length = 1115
Score = 37.5 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 35/263 (13%), Positives = 88/263 (33%), Gaps = 18/263 (6%)
Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222
+Y +R E I+ +K I S RI+ + ++ +
Sbjct: 384 NYESQIRTLTQRLIDFEGKINQKHEENRQLQQKQQAIESELRIFVQDHEHYKRIKDSELQ 443
Query: 223 VHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282
+ +++ LD Q+ S +Q +++ Q+ + K+ L
Sbjct: 444 EYQNEFSKLRQLQLDTQQKSQNQQNEIQRLNQIINDFKTEIELVKSQSQEIQKQVKLEYE 503
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF--------LA 334
+ + + I N + + ++ + + KL + L
Sbjct: 504 NDLKNSKAKQQYEIRQLQDQINDLKNDLQQQEQTIKQKDEIIHQQKLNLSQKQGEIDGLT 563
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPL--FPLT-GDD--VVKYGIPPGKKVGNILVHCK 389
L +N+ I Q S+I + ++ + G++ +++ I ++ L +
Sbjct: 564 LKLDNVEKLKDQEIQQYQSEIDNLQREQNLSQIKLGNEKSLLEQQIK---QLKQKLNDLE 620
Query: 390 QEWINSSFQLS--QEDLHHLLRK 410
+ I F+ +++L L++
Sbjct: 621 TQQIQQEFKNEQGRQELEQKLQQ 643
>gi|332662541|ref|YP_004445329.1| hypothetical protein Halhy_0546 [Haliscomenobacter hydrossis DSM
1100]
gi|332331355|gb|AEE48456.1| hypothetical protein Halhy_0546 [Haliscomenobacter hydrossis DSM
1100]
Length = 467
Score = 37.5 bits (85), Expect = 3.6, Method: Composition-based stats.
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400
+TG D++ G P K + + + + ++ S
Sbjct: 2 ITGKDLIDLGFKPNKWFKDAIEYANKHQLSGDSLTS 37
>gi|156938131|ref|YP_001435927.1| peptide chain release factor 1 [Ignicoccus hospitalis KIN4/I]
gi|156567115|gb|ABU82520.1| peptide chain release factor subunit 1 (aeRF-1) [Ignicoccus
hospitalis KIN4/I]
Length = 363
Score = 37.5 bits (85), Expect = 3.6, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE--W 392
+ + ++L ++ W P ++ IPPG+ VG+++ ++E
Sbjct: 1 MSQTKGVEISRAELKRLLKELEQWSAP-----ATTLLSLYIPPGRPVGDVMELLRKELSV 55
Query: 393 INS-SFQLSQEDLHHLL 408
++ + ++E + L
Sbjct: 56 ADNVKLKKTREAVKAAL 72
>gi|289191993|ref|YP_003457934.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
gi|288938443|gb|ADC69198.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
Length = 371
Score = 37.5 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+G D+ + + P + + +S+EDL L+K++++ +
Sbjct: 322 SGRDIKEKFLKP---------ALHKAILEDRDYISKEDLEWALKKIVSNRR 363
>gi|291229750|ref|XP_002734835.1| PREDICTED: TNF receptor-associated protein 1-like, partial
[Saccoglossus kowalevskii]
Length = 549
Score = 37.5 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 28/263 (10%), Positives = 67/263 (25%), Gaps = 17/263 (6%)
Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209
+ G +R D I K + + +S
Sbjct: 67 SQKPGSQAYRWSSDGSGSFELVEADGVQNGTKIVIHLKKDCWKYGIENDVKDVVKKYSNF 126
Query: 210 N--KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267
+ LN + ++ ++ V +++ D+ +
Sbjct: 127 VGVPIFLNGKRLNTVQALWMMDSKDITDQQHEDFYNFLSDSQGTPRYVLQYRADAPVNIR 186
Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-KVMI 326
L + D + + R Y + D + +
Sbjct: 187 SLFYFPDHTPTVWEFTRDHGNRVSLYSRKILIQPKAESILPKWLRFVRGIVDSEDIPLNL 246
Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386
++ + ++ L T I++ L D + + + YG+
Sbjct: 247 SRELLQNSILIRKLRSVLTNRIVRYLQDQAKKDRVKYD---KFIQDYGV----------- 292
Query: 387 HCKQEWINSSFQLSQEDLHHLLR 409
++ + S Q +E++ LLR
Sbjct: 293 FLREGIVTSDEQSEKEEIAKLLR 315
>gi|110805858|ref|YP_689378.1| hypothetical protein SFV_1924 [Shigella flexneri 5 str. 8401]
gi|110615406|gb|ABF04073.1| unnamed protein product [Shigella flexneri 5 str. 8401]
Length = 131
Score = 37.5 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDS-LMNLS--VQDIDIATTILPDRVMRIFSKTR 67
+L L + I GG VRD L + D+DI + + + ++
Sbjct: 23 EHKKARVLLDTL-ACSCPAWIFGGMVRDLGLYGVDGFSSDLDIVIGRSREELFQTLAELP 81
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITD 101
K + +G I+ FDI L
Sbjct: 82 VKQLR-FNKFGGIRFRYHDFEFDIWNLNETWAFQ 114
>gi|228956692|ref|ZP_04118481.1| hypothetical protein bthur0005_2320 [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228802993|gb|EEM49822.1| hypothetical protein bthur0005_2320 [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 225
Score = 37.5 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 11/104 (10%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL---SVQDIDIATT---ILPDRVMRIFS 64
+ + ++S L++ + + GG +RD + N +D DI + + + F
Sbjct: 17 NRPNARKLISSLDEN-AELLLFGGCIRDYIDNRFSEVPRDFDIVINTQGLNVEEYVLGFE 75
Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV 108
K K +G KI FDI L R +
Sbjct: 76 KISCKRN----KFGGYKIAADNLKFDIWELDKTWAFKERIIECN 115
>gi|300120159|emb|CBK19713.2| unnamed protein product [Blastocystis hominis]
Length = 230
Score = 37.5 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 3/143 (2%)
Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY-LYGDKVMIA 327
D I + E + S+ K + L V
Sbjct: 87 NCMINDVCWIDHRFHELVSTFEKCENPEFVPEDWEIVELGSLLLASKQLWPLMLHMVATE 146
Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387
K+ + I + + W P L G+D+ G+ G + +
Sbjct: 147 KILKGEERDRVMQCYTRFLEIAKERELMEMWNIPSI-LNGNDLSSMGVKRGPDMKGYMED 205
Query: 388 CKQEWINSSFQLSQEDLHHLLRK 410
++ I + ++E L +
Sbjct: 206 IRKWMILNP-HGTKEQCIEYLNQ 227
>gi|256421330|ref|YP_003121983.1| hypothetical protein Cpin_2291 [Chitinophaga pinensis DSM 2588]
gi|256036238|gb|ACU59782.1| protein of unknown function UPF0027 [Chitinophaga pinensis DSM
2588]
Length = 475
Score = 37.5 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQ 390
+ G+D++ G GK +G L ++
Sbjct: 6 INGNDLLAIGFTQGKILGLALEVLEK 31
>gi|229051372|ref|ZP_04194877.1| Tail tape measure protein [Bacillus cereus AH676]
gi|228721941|gb|EEL73381.1| Tail tape measure protein [Bacillus cereus AH676]
Length = 1586
Score = 37.5 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 26/313 (8%), Positives = 68/313 (21%), Gaps = 11/313 (3%)
Query: 108 VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167
+T + + + ++ + L N + + R+ E
Sbjct: 1140 WWTALPERMWEQLELWWTSISTWFDQTTTRWGENLEKWWNSIVTWWTTLPERMWEQLELW 1199
Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI-----WSEINKLLEAKNPLNAI 222
+ + L W +
Sbjct: 1200 WTSISTWFDQTTTRWGENLEKWWNSISTWWTTLPDRMWEKLELWWNSIATWFDETTTRWG 1259
Query: 223 VHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282
++ + + Q+ D + I +
Sbjct: 1260 DNLEKWWNSIVAWWTT--LPDRTWDQLEAWWNSISAWFDETAANWGENLEKWWAEIGNWF 1317
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342
S E++ + PEI A L +
Sbjct: 1318 NNLSSKPEVKNAAKKSMDEMKQGFEEKKPEIIDKLGEIIVDAFTALLAAAGIIALAVGRE 1377
Query: 343 QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW--INSSFQLS 400
FI + + + + + G V+ + G + K+ ++ F+ +
Sbjct: 1378 LLKRFINGMAGEQKNAEITADTI-GKAVLNL-LEKIPLFGAAIKVLKEFKEGLDDGFKDA 1435
Query: 401 QEDLHHLLRKLIA 413
+E + + K+ +
Sbjct: 1436 RETVSGWIDKIKS 1448
>gi|333004135|gb|EGK23667.1| hypothetical protein SFK272_2526 [Shigella flexneri K-272]
Length = 131
Score = 37.5 bits (85), Expect = 4.5, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDS-LMNLS--VQDIDIATTILPDRVMRIFSKTR 67
+L L + I GG VRD L + D+DI + + + ++
Sbjct: 23 EHKKARVLLDTL-ACSCPAWIFGGMVRDLGLYGVDGFSSDLDIVIGRSREELFQTLAELP 81
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDL 98
K + +G I+ FDI L
Sbjct: 82 VKQLR-FNKFGGIRFRYHDFEFDIWNLNETW 111
>gi|229544525|sp|P0C9J5|11011_ASFM2 RecName: Full=Protein MGF 360-3L
Length = 286
Score = 37.1 bits (84), Expect = 4.6, Method: Composition-based stats.
Identities = 19/256 (7%), Positives = 64/256 (25%), Gaps = 1/256 (0%)
Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILE 162
R+ W DF + + K+ + +N + N + + E
Sbjct: 27 RHPPKEELPYWCTYVKNCDFCWDCQNDICKNKITNESISINSIVNCRVTRDSPSQSCFYE 86
Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222
+++ + ++ + + + + + +
Sbjct: 87 ISVKMPNHHSMECSHPRPYTGNEIFMEKWGGGGDYWPIIIRHCCFYLVFSIAFVGYIVFV 146
Query: 223 VHMYNGGIFKEIFLDVQEISLD-QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281
+ L + I + + +F K + + + + +
Sbjct: 147 YNKNLHLNTTMKLLALLSILIWLSQPALNRPLSIFYMKQNLPRTYTPPVRELEYWCTYAK 206
Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341
F + F + + + + A +I + N
Sbjct: 207 HCDFCWTCKDGMCKNKVFRDHPIITQNDYIVNCTVSRWHDRCMYEAHFRIHYQHNMNCSQ 266
Query: 342 HQDTCFILQVLSDIIH 357
+D + +++ +I+
Sbjct: 267 PKDLEWFIELKRHVIN 282
>gi|325286197|ref|YP_004261987.1| hypothetical protein Celly_1288 [Cellulophaga lytica DSM 7489]
gi|324321651|gb|ADY29116.1| hypothetical protein Celly_1288 [Cellulophaga lytica DSM 7489]
Length = 459
Score = 37.1 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHC 388
+TG+D++ G P K L +
Sbjct: 7 ITGEDLINMGYKPAKWFKEALNYI 30
>gi|313635576|gb|EFS01778.1| CCA-adding enzyme [Listeria seeligeri FSL S4-171]
Length = 44
Score = 37.1 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 27 DKSCIVGGAVRDSLM 41
++ VGG+VRD L+
Sbjct: 15 FEAYFVGGSVRDYLL 29
>gi|157817712|ref|NP_001100876.1| zinc phosphodiesterase ELAC protein 1 [Rattus norvegicus]
gi|149064598|gb|EDM14801.1| elaC homolog 1 (E. coli) (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 362
Score = 37.1 bits (84), Expect = 5.1, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L+ + G+PPG G + +++ +S +D+
Sbjct: 199 LSAQKLRDLGVPPGPAYGKLKNGI-SVVLDNGVTISPQDVLK 239
>gi|288556437|ref|YP_003428372.1| hypothetical protein BpOF4_17195 [Bacillus pseudofirmus OF4]
gi|288547597|gb|ADC51480.1| hypothetical protein BpOF4_17195 [Bacillus pseudofirmus OF4]
Length = 228
Score = 37.1 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 8/112 (7%)
Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPD-RVMRIFSKTRYK 69
S+ + + L++ + GGAVRD + +D DIA + +I YK
Sbjct: 20 SETLEFVERLSETGELLFF-GGAVRDIFIKNEQYPRDFDIAVKFKDELEFNKIIKNYEYK 78
Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121
+G KI FDI L + K K+ L D
Sbjct: 79 KN----RFGGYKIKVSGIDFDIWDLNNTWAFKNTELKPSEENLAKSVYLNID 126
>gi|281306669|ref|YP_003345475.1| hypothetical protein SBWP25_0010 [Pseudomonas phage phi-2]
gi|271277974|emb|CBH51580.1| hypothetical phage protein [Pseudomonas phage phi-2]
Length = 198
Score = 37.1 bits (84), Expect = 5.3, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 33 GGAVRDSLMNL-SVQDIDIA 51
GGAVRD ++ L +D+D+
Sbjct: 25 GGAVRDMVLGLGKPKDLDVV 44
>gi|147919622|ref|YP_686638.1| putative signal transduction histidine kinase [uncultured
methanogenic archaeon RC-I]
gi|110622034|emb|CAJ37312.1| putative signal transduction histidine kinase [uncultured
methanogenic archaeon RC-I]
Length = 616
Score = 37.1 bits (84), Expect = 5.3, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 2 VSIVQHKWFHDSDLINI-----LSLLNKGEDKSCIVGGAVR-DSLMNLSVQDIDIATTIL 55
++++ K + DL +I + L +S + GG VR D ++ DID+A
Sbjct: 463 MALIHEKLYQSKDLSHIDFEEYVGSLTGYLSRSYVAGGNVRIDLDISDISLDIDVAIPC- 521
Query: 56 PDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91
++ +K GTI + ++ +
Sbjct: 522 -GLIINELVSNSFKYAFPGGRPGTISVRMKRVAGEY 556
>gi|311244541|ref|XP_003121492.1| PREDICTED: zinc phosphodiesterase ELAC protein 1-like [Sus scrofa]
Length = 288
Score = 37.1 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406
L + G+PPG G + + + +S +D+
Sbjct: 125 LNAQKLKDLGVPPGPAYGKLKNGI-SVVLENGVIISPQDVLK 165
>gi|195111596|ref|XP_002000364.1| GI22562 [Drosophila mojavensis]
gi|193916958|gb|EDW15825.1| GI22562 [Drosophila mojavensis]
Length = 937
Score = 37.1 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 24/250 (9%), Positives = 51/250 (20%), Gaps = 24/250 (9%)
Query: 37 RDSLMNLSVQDIDIATTILPDR-VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR 95
RD + +D D P + F KT + +
Sbjct: 404 RDH-LKFHPKDFDFEAHGEPIERIAEGFYKTAVESTAAGLKRRIF-------------ND 449
Query: 96 SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL----RNRTIK 151
+ GRY + ++ + D + + R +
Sbjct: 450 LKVGMYGRYYSITNEARYEMNLDSSDTDSDGEADVVERHSYSCELCKTPETVFPRKYQLH 509
Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINK 211
H LE R F + + L + + W +
Sbjct: 510 EHHRQEHTWLEAPHVCQRCDARFLSAQLLDQHTLKLCQNTLKRFMCDKCPQRFFWRRNLR 569
Query: 212 LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLIS 271
+ + + Q+ S +++ + E
Sbjct: 570 AHLVDH-----KNKQETYPCDQCSRSFQDKSAVTKHKLMHHDGSKELLPCRWCTRTFYRP 624
Query: 272 WQDKKSILSM 281
K +
Sbjct: 625 ALLHKHVQRH 634
>gi|288549773|ref|ZP_05968124.2| Transposon-related protein [Enterobacter cancerogenus ATCC 35316]
gi|288317355|gb|EFC56293.1| Transposon-related protein [Enterobacter cancerogenus ATCC 35316]
Length = 248
Score = 37.1 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDS-LMNLS--VQDIDIATTILPDRVMRIFSKTR 67
++ L + + I GG +RD L DID+ + D +++
Sbjct: 23 ERKQARALIDALAERTH-AWIFGGMIRDIGLYGRGGFTSDIDLVIDLSRDDLIQTLKSLN 81
Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGR 103
+ + + G ++ FDI ++ R
Sbjct: 82 IERMRVNKL-GGVRFHFMSLDFDIWSINDTWAFKNR 116
>gi|145508694|ref|XP_001440291.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407508|emb|CAK72894.1| unnamed protein product [Paramecium tetraurelia]
Length = 785
Score = 36.7 bits (83), Expect = 6.6, Method: Composition-based stats.
Identities = 22/228 (9%), Positives = 60/228 (26%), Gaps = 6/228 (2%)
Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210
+ R L+ R + + K E +
Sbjct: 33 EQYSRFTLRAWWIVLQAHRDKPYATRIDLYERAFKYIPNCYKLWFNYLKEQLEDLG--GR 90
Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270
+ I + ++ ++ + + + + + +L V
Sbjct: 91 STFLSNKFEEMISYFERALVYMHKMPNIWLMYAEYSASLQKYTHTRNIYDRALQSLPVTQ 150
Query: 271 SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKL 329
+ K+ K + + N + ++ + K + ++++ L
Sbjct: 151 HHRIWKAYCQWISKTDSIKTAISIYNRYIKINPDYKEEYLDYLVSKQLWGNACQILVDIL 210
Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377
+ T D ++ L +II P+ ++K+GI
Sbjct: 211 NDDQFNSSSGKTKYD---FMKYLCEIIARHPNDLPIDAASIMKFGIKK 255
>gi|159905310|ref|YP_001548972.1| ATPase central domain-containing protein [Methanococcus maripaludis
C6]
gi|159886803|gb|ABX01740.1| AAA ATPase central domain protein [Methanococcus maripaludis C6]
Length = 371
Score = 36.7 bits (83), Expect = 6.8, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 13/78 (16%)
Query: 344 DTCFILQVLSDIIHWKKPLFPLTGD-DVVKY-----GIPPGKKVGNI-LV-HCKQEWINS 395
D L++L P+T + D+ KY G+ G+ + L + +
Sbjct: 290 DDNERLKILELYAK----KMPITVNADLKKYVEKTKGM-NGRTIKEKFLKPALHKAILED 344
Query: 396 SFQLSQEDLHHLLRKLIA 413
+ ++DL +++K++
Sbjct: 345 KTSIEEKDLDEIIKKIVK 362
>gi|46581419|ref|YP_012227.1| B12 binding /radical SAM domain-containing protein [Desulfovibrio
vulgaris str. Hildenborough]
gi|46450841|gb|AAS97487.1| B12 binding domain protein/radical SAM domain protein
[Desulfovibrio vulgaris str. Hildenborough]
gi|311235076|gb|ADP87930.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
Length = 481
Score = 36.7 bits (83), Expect = 7.8, Method: Composition-based stats.
Identities = 21/207 (10%), Positives = 56/207 (27%), Gaps = 14/207 (6%)
Query: 57 DRVMRIFSKTRYKVIPTSIS-YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115
+ ++ + + I GT+ TLR + + +
Sbjct: 111 EALVEALEQYGREGHVEGIRNVGTVTTPV--------TLRPLVSDLDDLPFIDRDIVYAK 162
Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHR-----ILEDYLRILRF 170
+ + RDF + A + + R I E I R+
Sbjct: 163 NHIVRDFPLKTFAASRGCHFKCTYCFNHAYNAMYAGLGHVVRRRSVDHLIAEMRDVIARY 222
Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230
+ + + + + L + + + ++ + + +
Sbjct: 223 PTSYIKISDDSFTYRVDSWLEEFAEKYPRLIGLPFYCLLRADVVTRDMVRLLREAGCRSV 282
Query: 231 FKEIFLDVQEISLDQLSQVIEAEQVFE 257
I + + D L++ + E++ E
Sbjct: 283 CMSIEAGAETVRRDVLNRRVSNEKIIE 309
>gi|256810841|ref|YP_003128210.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
gi|256794041|gb|ACV24710.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
Length = 371
Score = 36.3 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
+G D+ + + P + + +S+EDL L+K++ +
Sbjct: 322 SGRDIKEKFLKP---------ALHKAILEDRDYVSKEDLEWALKKILKDRR 363
>gi|134046686|ref|YP_001098171.1| ATPase central domain-containing protein [Methanococcus maripaludis
C5]
gi|132664311|gb|ABO35957.1| AAA ATPase, central domain protein [Methanococcus maripaludis C5]
Length = 371
Score = 36.3 bits (82), Expect = 8.5, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 354 DIIHWKKPLFPLTGD-DVVKY-----GIPPGKKVGNI-LV-HCKQEWINSSFQLSQEDLH 405
I+ P+T + D+ KY G+ G+ + L + + + ++DL
Sbjct: 296 KILELYAKKMPITVNADLKKYVEKTKGM-NGRTIKEKFLKPALHKAILEDRTSIEEKDLD 354
Query: 406 HLLRKLIA 413
+++KL+
Sbjct: 355 EIIKKLVK 362
>gi|224120062|ref|XP_002331127.1| predicted protein [Populus trichocarpa]
gi|222872855|gb|EEF09986.1| predicted protein [Populus trichocarpa]
Length = 1068
Score = 36.3 bits (82), Expect = 9.5, Method: Composition-based stats.
Identities = 19/161 (11%), Positives = 54/161 (33%), Gaps = 5/161 (3%)
Query: 220 NAIVHMYNGGIFKEIFLDVQEISLDQLSQVI----EAEQVFEWKIDSLLRFIVLISWQDK 275
+V + + +E + + LS++ E + FE + L R+ S+
Sbjct: 525 ECVVALTDQWYLTYDDPQWKESAEECLSKMNLYSDETKHGFEHTLGWLNRWACSRSFGLG 584
Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK-IFLA 334
I + ++++ + K + +++ IF
Sbjct: 585 TRIPWDPEFLVESLSDSTIYMAYYAVAHLLHNEDMYGTNKAHPIKPEEMTDDVWNFIFCD 644
Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375
Y + D+ + ++ + +W ++G D+++ +
Sbjct: 645 GPYPTSSKIDSSVLDKMKKEFEYWYPFDLRVSGKDLIQNHL 685
>gi|332308950|ref|YP_004442836.1| polyprotein [Banana streak CA virus]
gi|331029467|gb|AEC49887.1| polyprotein [Banana streak CA virus]
Length = 1836
Score = 36.3 bits (82), Expect = 9.6, Method: Composition-based stats.
Identities = 21/214 (9%), Positives = 59/214 (27%), Gaps = 21/214 (9%)
Query: 223 VHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282
M + ++ ++ +E+ + ++ + K+ R +
Sbjct: 802 EDMEDFKNYEVYMMEAEELD-EPKEYLVGEPSEWRSKMRVSRRQYYCKHDWKFEESHRTI 860
Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI-----FLALHY 337
+ + I C+ + P K K +++ +AL
Sbjct: 861 CRACGSEAVHKHRIDCLKCDMTICLMCQPWFYKDINTEEVKKTRVRIERVIDWKEIALRQ 920
Query: 338 NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV---KYGIPPGKKVGNIL------VHC 388
+ + Q+ + K+ + L G +++ + G + +
Sbjct: 921 HEVLKTSIANEKQLSEENEELKEKIKELKGKELITVEEISEEEGAAMIEKIENLEKENEL 980
Query: 389 KQEWINS------SFQLSQEDLHHLLRKLIASSQ 416
I + ++L +RKL +
Sbjct: 981 LNAIITQKEEEEVGYLNKIQELEERIRKLEQQMK 1014
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.313 0.121 0.313
Lambda K H
0.267 0.0370 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,568,581,173
Number of Sequences: 14124377
Number of extensions: 151542279
Number of successful extensions: 591740
Number of sequences better than 10.0: 3877
Number of HSP's better than 10.0 without gapping: 3589
Number of HSP's successfully gapped in prelim test: 288
Number of HSP's that attempted gapping in prelim test: 580279
Number of HSP's gapped (non-prelim): 4664
length of query: 416
length of database: 4,842,793,630
effective HSP length: 142
effective length of query: 274
effective length of database: 2,837,132,096
effective search space: 777374194304
effective search space used: 777374194304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 82 (36.3 bits)