HHsearch alignment for GI: 254781118 and conserved domain: COG0017
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=720.13 Aligned_cols=419 Identities=26% Similarity=0.426 Sum_probs=358.0
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCC--CEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEE
Q ss_conf 8859999986515555643598899986881114877--21899779935999980542796788887423743168996
Q gi|254781118|r 40 DITNAEVREKYSHLQNDEKSQDMITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGIT 117 (502)
Q Consensus 40 t~~~~e~~~~~~~l~~~~~~~~~V~i~Grv~~~R~~G--~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~ 117 (502)
T Consensus 4 ~~~i~di~~~--------~~~~~V~v~GWV~~~R~~g~i~Fi~lrDgsg~iQ~v~~~~~~~~~~~~-~~~L~~es~v~V~ 74 (435)
T COG0017 4 RTYIKDIKPH--------VGGQEVTVRGWVHNKRDLGKIIFLVLRDGSGFIQAVVPKNKVYEELFK-AKKLTLESSVVVT 74 (435)
T ss_pred EEEHHHHHCC--------CCCCEEEEEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCHHHHH-HHCCCCCCEEEEE
T ss_conf 5437765044--------798579999887550015870899997588379999977877176766-6317876589999
Q ss_pred EEEECCCC--CCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57630566--5534212201221135554322212531144542011001234444433578899999999873855345
Q gi|254781118|r 118 GQVRRTKR--GELTVNAQKIIMLSKALNSIPETYYGLSDVEIRYRKRYLDIISNSDSKIRFQQRSLLISQIRHFMEKKGF 195 (502)
Q Consensus 118 G~v~~~~~--gelei~~~~~~~l~~~~~~lP~~~~~~~d~e~rl~~R~LDl~~~~~~~~~l~~Rs~i~~~iR~~l~~~gF 195 (502)
T Consensus 75 G~v~~~~~a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~~~~e~lld~rhL~lR~~-~~~Av~kirs~i~~a~~eff~~~gF 153 (435)
T COG0017 75 GIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHSELETLLDNRHLDLRTP-KIQAVFKIRSSILRAIREFFYENGF 153 (435)
T ss_pred EEEECCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCHHEECCCC-CHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999748899987799887889940468877768645557888874403020462-0377894999999999999975895
Q ss_pred HHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC-CCCCCCCCCCCC
Q ss_conf 4311565323566655420364122222543210012234444210243024543453202542344-324521000100
Q gi|254781118|r 196 MEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELYLKRVLISGLTDQVFELNRNFRNEGVSS-RHNPEFTMIEAY 274 (502)
Q Consensus 196 ~EveTP~L~~~~~g~~~~~F~~~~~~~~~~~yL~qSpql~~k~l~~~G~~drvfeI~~~FR~E~~~~-~H~pEFt~lE~e 274 (502)
T Consensus 154 ~eV~tP~i~~~~~EGg~elF~v--~yf~~~a~LtqS~QLyke~~~~a--l~rVf~igP~FRAE~s~T~RHL~EF~~ld~E 229 (435)
T COG0017 154 TEVHTPIITASATEGGGELFKV--DYFDKEAYLTQSPQLYKEALAAA--LERVFTIGPTFRAEKSNTRRHLSEFWMLDPE 229 (435)
T ss_pred EEECCCEEECCCCCCCCEEEEE--EECCCCEEEECCHHHHHHHHHHH--HCCEEEECCCEECCCCCCCCHHHHHHEECCE
T ss_conf 8965946853478998505777--50685667714788999999998--5764895672554778970036667330211
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 110001112456789999889987088613--117534113322100000002334488621543321677765652023
Q gi|254781118|r 275 WAYTDYRDMMKLVEDLCHNLAKTLHGTTDI--PFGEKVISFKAPFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGI 352 (502)
Q Consensus 275 ~a~~d~~dim~l~E~li~~i~~~~~~~~~~--~~~~~~~d~~~~f~~~~~~e~i~~~~g~~~~~~~~~e~~~~~~~~~g~ 352 (502)
T Consensus 230 maf~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~------------~~~~l~~~~~~pf~ritY~eAieiL~-~~~~ 296 (435)
T COG0017 230 MAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGR------------DNSELKRPESAPFPRITYKEAIEILE-EKGF 296 (435)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHCCCCCCCCCEEEHHHHHHHHH-HCCC
T ss_conf 1367688899999999999999999971898887614------------61110344468963777999999998-6477
Q ss_pred CCCCCCCHHHHHHHHHHHCCCHHEEC-CEEEECCCHHHHHHHC-CCCCCHHHEEECCEEECC-EEEEECHHEECCHHHHH
Q ss_conf 54332231899988765213010105-4356558002345303-579672110111355557-87200211005799999
Q gi|254781118|r 353 TVENDALWGEVMMTIFEEKIEKNIVN-PTHITDFPKDISPFAK-EVAGEKRLVERFETYCNG-WEICNAFSELNDPVEQR 429 (502)
Q Consensus 353 ~~~~~~~~g~l~~~~~e~~ie~~~~~-p~fI~dfP~~~~Pf~~-~~~~~~~~~~~fdl~~~G-~Ei~~G~~e~~dp~~q~ 429 (502)
T Consensus 297 e~---~~~GdDl~~e~Er~l~e~~~~~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll~p~~gEIigGsqRe~~----- 368 (435)
T COG0017 297 EK---VEWGDDLGTEHERYLGEEYFKPPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHD----- 368 (435)
T ss_pred CC---CCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCEECCCC-----
T ss_conf 65---6777756889999999875799499981764446650333799887699876524787056036230430-----
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCEECCHHHHHHHHCCCCCCEECCCCCCCCCC
Q ss_conf 999999988730573354508999997608698461324689998998262884041278675766
Q gi|254781118|r 430 IRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNAPSIRDVILFPAQRVK 495 (502)
Q Consensus 430 ~r~~~~~~~~~~~~~~~~~~~~yl~a~~yG~PPhgG~glGldRL~m~l~g~~~IRdvi~FP~~k~~ 495 (502)
T Consensus 369 --~d~L~~ri~~~gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR~~~r 432 (435)
T COG0017 369 --YDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDPGR 432 (435)
T ss_pred --HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCC
T ss_conf --9999999998099968818999998738999860033799999999488832012447777787