HHsearch alignment for GI: 254781118 and conserved domain: COG1107

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair].

Probab=96.47  E-value=0.0031  Score=40.03  Aligned_cols=78  Identities=22%  Similarity=0.427  Sum_probs=57.1

Q ss_pred             CCCCCEEEEEEEECCCCCCC--CEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCE
Q ss_conf             43598899986881114877--2189977993599998054279678888742374316899657630566553421220
Q gi|254781118|r   57 EKSQDMITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRRTKRGELTVNAQK  134 (502)
Q Consensus        57 ~~~~~~V~i~Grv~~~R~~G--~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~~~~gelei~~~~  134 (502)
T Consensus       210 ~~ig~tV~I~GeV~qikqT~GPTVFtltDetg~i~aAAFe~-aGv---RAyP~ievGdiV~ViG~V~~r-~g~lQiE~~~  284 (715)
T COG1107         210 EMIGKTVRIEGEVTQIKQTSGPTVFTLTDETGAIWAAAFEE-AGV---RAYPEIEVGDIVEVIGEVTRR-DGRLQIEIEA  284 (715)
T ss_pred             HHCCCEEEEEEEEEEEEECCCCEEEEEECCCCCEEHHHHCC-CCC---CCCCCCCCCCEEEEEEEEEEC-CCCEEEEEHH
T ss_conf             53486699977899999758987999806888442666435-774---348998778569998777504-7827876243


Q ss_pred             EEEEC
Q ss_conf             12211
Q gi|254781118|r  135 IIMLS  139 (502)
Q Consensus       135 ~~~l~  139 (502)
T Consensus       285 me~L~  289 (715)
T COG1107         285 MEKLT  289 (715)
T ss_pred             HHHHH
T ss_conf             57751