HHsearch alignment for GI: 254781118 and conserved domain: COG1190
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=1012.93 Aligned_cols=494 Identities=49% Similarity=0.838 Sum_probs=470.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC--EEEEEEEECCCCCCC--
Q ss_conf 9887572016879999999999999983888788876788859999986515555643598--899986881114877--
Q gi|254781118|r 1 MNNTLTPESLSSNSIEVRSQKLNMLRKSLAEVYPAHFHRDITNAEVREKYSHLQNDEKSQD--MITVAGRVYSSRNSG-- 76 (502)
Q Consensus 1 m~~~~~~~~~~~~~~~~R~~kl~~l~~~~~~pyP~~f~~t~~~~e~~~~~~~l~~~~~~~~--~V~i~Grv~~~R~~G-- 76 (502)
T Consensus 1 m~~-~~~~~~~~~~~~~R~~kl~~lr~~g~~~yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK~ 79 (502)
T COG1190 1 MSE-AEEARDLNDQIAVRREKLAALREQGIDPYPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGKA 79 (502)
T ss_pred CCC-HHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHCCCEEEEECCEEEECCCCCE
T ss_conf 973-1432337577899999999999728888877676645499999997532402332005505884326632025752
Q ss_pred CEEEEECCCCEEEEEEECCCCCHHHHH-HHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHH
Q ss_conf 218997799359999805427967888-8742374316899657630566553421220122113555432221253114
Q gi|254781118|r 77 MFMDIHDASGKIQIFTHKDTADQDSQN-LLSMIDIGDIIGITGQVRRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDV 155 (502)
Q Consensus 77 ~Fi~LrD~~g~iQv~~~~~~~~~~~~~-~~~~l~~gd~i~v~G~v~~~~~gelei~~~~~~~l~~~~~~lP~~~~~~~d~ 155 (502)
T Consensus 80 ~F~~i~d~~gkiQ~yi~k~~~~~~~~~~~~~~~dlGDiigv~G~~~~T~~GelSv~v~~~~lLsKsL~pLPeK~hgL~D~ 159 (502)
T COG1190 80 SFADLQDGSGKIQLYVNKDEVGEEVFEALFKKLDLGDIIGVEGPLFKTKTGELSVSVEELRLLSKSLRPLPEKFHGLTDK 159 (502)
T ss_pred EEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCHHHCCCCCH
T ss_conf 58999408963899995465464668888632665788866420565489846899877756202077797454378638
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 45420110012344444335788999999998738553454311565323566655420364122222543210012234
Q gi|254781118|r 156 EIRYRKRYLDIISNSDSKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELY 235 (502)
Q Consensus 156 e~rl~~R~LDl~~~~~~~~~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~~g~~~~~F~~~~~~~~~~~yL~qSpql~ 235 (502)
T Consensus 160 E~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~ThhNald~dlyLRIApELy 239 (502)
T COG1190 160 EIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHNALDMDLYLRIAPELY 239 (502)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCHHH
T ss_conf 88999888898659999999999999999999999877975841600035578732265012202367756876241899
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCC
Q ss_conf 44421024302454345320254234432452100010011000111245678999988998708861311753411332
Q gi|254781118|r 236 LKRVLISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGTTDIPFGEKVISFKA 315 (502)
Q Consensus 236 ~k~l~~~G~~drvfeI~~~FR~E~~~~~H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~~~~~~~~~~~~~d~~~ 315 (502)
T Consensus 240 LKRliVGG~-erVfEIgr~FRNEGid~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~ 318 (502)
T COG1190 240 LKRLIVGGF-ERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSK 318 (502)
T ss_pred HHHHHHCCC-HHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCC
T ss_conf 998875372-1422305520037876664842356899999857999999999999999999549737878997675489
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHCCCHHEECCEEEECCCHHHHHHH
Q ss_conf 210000000233448862154332167776565202354332--231899988765213010105435655800234530
Q gi|254781118|r 316 PFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVEND--ALWGEVMMTIFEEKIEKNIVNPTHITDFPKDISPFA 393 (502)
Q Consensus 316 ~f~~~~~~e~i~~~~g~~~~~~~~~e~~~~~~~~~g~~~~~~--~~~g~l~~~~~e~~ie~~~~~p~fI~dfP~~~~Pf~ 393 (502)
T Consensus 319 pf~ri~m~dal~e~~g~~~~~~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~vE~~liqPTFv~d~P~eiSPLa 398 (502)
T COG1190 319 PFKRITMVDALKEYLGVDFDDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAKLIQPTFVTDHPVEISPLA 398 (502)
T ss_pred CEEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 72256648999987186655458879999999980897576555367899999998776564148824616854368665
Q ss_pred CCCCCCHHHEEECCEEECCEEEEECHHEECCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHCCCCCCCCEECCHHH
Q ss_conf 35796721101113555578720021100579999999999998873-05733545089999976086984613246899
Q gi|254781118|r 394 KEVAGEKRLVERFETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSH-QRGEHTILDEDFLDAMTYGMPPASGLGLGIDR 472 (502)
Q Consensus 394 ~~~~~~~~~~~~fdl~~~G~Ei~~G~~e~~dp~~q~~r~~~~~~~~~-~~~~~~~~~~~yl~a~~yG~PPhgG~glGldR 472 (502)
T Consensus 399 k~~~~~p~~teRFElfi~g~EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPPTgG~GiGIDR 478 (502)
T COG1190 399 KRHRSNPGLTERFELFIGGKEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGGLGIGIDR 478 (502)
T ss_pred CCCCCCCCHHHHHEEEECCEEEEECCCHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 67988865132210135458763112220699999999999999987299300115799999986699998875125777
Q ss_pred HHHHHCCCCCCEECCCCCCCCCCC
Q ss_conf 989982628840412786757667
Q gi|254781118|r 473 LIMLLTNAPSIRDVILFPAQRVKN 496 (502)
Q Consensus 473 L~m~l~g~~~IRdvi~FP~~k~~~ 496 (502)
T Consensus 479 LvMllT~~~sIRdVilFP~mr~~~ 502 (502)
T COG1190 479 LVMLLTNSPSIRDVILFPAMRPEK 502 (502)
T ss_pred HHHHHCCCCCHHHEECCCCCCCCC
T ss_conf 777773998554222156557889