HHsearch alignment for GI: 254781118 and conserved domain: COG4085

>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only].

Probab=90.70  E-value=0.93  Score=24.07  Aligned_cols=74  Identities=24%  Similarity=0.446  Sum_probs=51.3

Q ss_pred             CCEEEEEEEECCCC-CCC--C-EEEEECCCCEEEEEEECCCCCHHHHHHH---HHCCCCEEEEEEEEEECCCCCCCCCCC
Q ss_conf             98899986881114-877--2-1899779935999980542796788887---423743168996576305665534212
Q gi|254781118|r   60 QDMITVAGRVYSSR-NSG--M-FMDIHDASGKIQIFTHKDTADQDSQNLL---SMIDIGDIIGITGQVRRTKRGELTVNA  132 (502)
Q Consensus        60 ~~~V~i~Grv~~~R-~~G--~-Fi~LrD~~g~iQv~~~~~~~~~~~~~~~---~~l~~gd~i~v~G~v~~~~~gelei~~  132 (502)
T Consensus        51 ~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGti~vva~~~te--e~l~~n~~~p~~~eGe~veVtGrv~~y-rG~~eVkv  127 (204)
T COG4085          51 NEEVTVKGEVTADQNAIGGGIESLVLNDGTGTITVVASRSTE--ETLELNEGMPVTVEGEIVEVTGRVEEY-RGSSEVKV  127 (204)
T ss_pred             ECCCEEEEEEEEEECCCCCCEEEEEEECCCCCEEEEEECCHH--HHHHHCCCCCCCCCCCEEEEEEEEEEE-CCCCEEEC
T ss_conf             025322148975310123665999997798748999906736--768644788732267589998888771-79730310


Q ss_pred             CEEE
Q ss_conf             2012
Q gi|254781118|r  133 QKII  136 (502)
Q Consensus       133 ~~~~  136 (502)
T Consensus       128 nq~~  131 (204)
T COG4085         128 NQPN  131 (204)
T ss_pred             CCCC
T ss_conf             6844