HHsearch alignment for GI: 254781118 and conserved domain: PRK00484
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=1083.87 Aligned_cols=487 Identities=50% Similarity=0.853 Sum_probs=467.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC-CCCCEEEEEEEECCCCCCC--CEEEEECCC
Q ss_conf 1687999999999999998388878887678885999998651555564-3598899986881114877--218997799
Q gi|254781118|r 9 SLSSNSIEVRSQKLNMLRKSLAEVYPAHFHRDITNAEVREKYSHLQNDE-KSQDMITVAGRVYSSRNSG--MFMDIHDAS 85 (502)
Q Consensus 9 ~~~~~~~~~R~~kl~~l~~~~~~pyP~~f~~t~~~~e~~~~~~~l~~~~-~~~~~V~i~Grv~~~R~~G--~Fi~LrD~~ 85 (502)
T Consensus 1 ~~~~~~~~~r~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrv~~~R~~Gk~~F~~lrD~~ 80 (491)
T PRK00484 1 EDLNEQIAVRREKLAELREEGINPYPNDFERTHTSAELQAKYADLEKEELEALIEVSVAGRVMLKRVMGKASFATIQDGS 80 (491)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEECC
T ss_conf 96108999999999999974999999978586669999998751385334679889999878405056981999999699
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCHH
Q ss_conf 35999980542796788887423743168996576305665534212201221135554322212531144542011001
Q gi|254781118|r 86 GKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDVEIRYRKRYLD 165 (502)
Q Consensus 86 g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~~~~gelei~~~~~~~l~~~~~~lP~~~~~~~d~e~rl~~R~LD 165 (502)
T Consensus 81 g~iQ~~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~t~~Gel~v~~~~~~iLsksl~plP~k~~g~~d~e~r~r~RyLD 160 (491)
T PRK00484 81 GRIQLYVSKDDVGEEAYEAFKKLDLGDIIGVEGTLFKTKTGELSVKVTELTLLTKSLRPLPDKFHGLSDQETRYRQRYLD 160 (491)
T ss_pred CCEEEEEECCCCCHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEECCEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf 45899996675899999999606866689878799865885166403317993168889985444556755631133021
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 23444443357889999999987385534543115653235666554203641222225432100122344442102430
Q gi|254781118|r 166 IISNSDSKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELYLKRVLISGLT 245 (502)
Q Consensus 166 l~~~~~~~~~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~~g~~~~~F~~~~~~~~~~~yL~qSpql~~k~l~~~G~~ 245 (502)
T Consensus 161 Li~n~~~~~~f~~Rs~ii~~iR~~l~~~gF~EVeTPiL~~~~gGA~ArpF~t~~n~l~~~~yL~~SPqLylk~l~vgG~- 239 (491)
T PRK00484 161 LIVNEESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIPGGAAARPFITHHNALDIDLYLRIAPELYLKRLIVGGF- 239 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCC-
T ss_conf 0279999999999999999999999867689986787766688756676556445668554420687898777876272-
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEECC
Q ss_conf 24543453202542344324521000100110001112456789999889987088613117534113322100000002
Q gi|254781118|r 246 DQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGTTDIPFGEKVISFKAPFACKSMLQL 325 (502)
Q Consensus 246 drvfeI~~~FR~E~~~~~H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~~~~~~~~~~~~~d~~~~f~~~~~~e~ 325 (502)
T Consensus 240 ervfeI~r~FR~E~~~~rH~pEFT~lE~e~af~d~~dvm~l~E~li~~v~~~v~g~~~~~~~~~~idl~~pf~rit~~ea 319 (491)
T PRK00484 240 ERVFEIGRNFRNEGIDTRHNPEFTMIEFYQAYADYNDMMDLTEELIRHLAKEVLGTTKITYGGTEIDFGKPFKRLTMVDA 319 (491)
T ss_pred HHHEEHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEECCCCCCEECCHHHH
T ss_conf 02222487662575543418401021367724799999999999999999996199567328776337899502239999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHEECCEEEECCCHHHHHHHCCCCCCHHHEEE
Q ss_conf 33448862154332167776565202354332231899988765213010105435655800234530357967211011
Q gi|254781118|r 326 VKEATGLDFMLLKSDQEARVAAQSIGITVENDALWGEVMMTIFEEKIEKNIVNPTHITDFPKDISPFAKEVAGEKRLVER 405 (502)
Q Consensus 326 i~~~~g~~~~~~~~~e~~~~~~~~~g~~~~~~~~~g~l~~~~~e~~ie~~~~~p~fI~dfP~~~~Pf~~~~~~~~~~~~~ 405 (502)
T Consensus 320 i~~~~g~d~~~~~~~~~l~~~~~~~g~~~~~~~~~g~l~~~lfe~~ve~~l~~PtFV~d~P~e~sPlak~~~~dp~~~er 399 (491)
T PRK00484 320 IKEYTGVDFTPQDEEEEARAIAKELGVEVEKSWGLGKLINELFEEFVEPKLIQPTFITDYPVEISPLAKRHRSNPGFTER 399 (491)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 99970998765567899999999869987887787899999888776541146400136722158755668889670367
Q ss_pred CCEEECCEEEEECHHEECCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHCCCCCCCCEECCHHHHHHHHCCCCCCE
Q ss_conf 13555578720021100579999999999998873-05733545089999976086984613246899989982628840
Q gi|254781118|r 406 FETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSH-QRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNAPSIR 484 (502)
Q Consensus 406 fdl~~~G~Ei~~G~~e~~dp~~q~~r~~~~~~~~~-~~~~~~~~~~~yl~a~~yG~PPhgG~glGldRL~m~l~g~~~IR 484 (502)
T Consensus 400 fdL~i~G~Ei~ng~~el~Dp~~Q~~rf~~q~~~k~~gd~ea~~~Dedfl~Al~yG~PPhgG~GlGiDRLvMlLtg~~sIR 479 (491)
T PRK00484 400 FELFIGGRELANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFYDEDFLRALEYGMPPTGGLGIGIDRLVMLLTNSPSIR 479 (491)
T ss_pred ECEEECCEEECCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCHH
T ss_conf 56434889973650331799999999999999986488323324099999977799998526556999999983999577
Q ss_pred ECCCCCCCCCCC
Q ss_conf 412786757667
Q gi|254781118|r 485 DVILFPAQRVKN 496 (502)
Q Consensus 485 dvi~FP~~k~~~ 496 (502)
T Consensus 480 dVI~FP~~kp~~ 491 (491)
T PRK00484 480 DVILFPAMRPEK 491 (491)
T ss_pred HCCCCCCCCCCC
T ss_conf 501688889999