HHsearch alignment for GI: 254781118 and conserved domain: PRK02983
>PRK02983 lysS lysyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=0 Score=1051.52 Aligned_cols=482 Identities=37% Similarity=0.593 Sum_probs=455.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCC--CEEEE
Q ss_conf 7572016879999999999999983888788876788859999986515555643598899986881114877--21899
Q gi|254781118|r 4 TLTPESLSSNSIEVRSQKLNMLRKSLAEVYPAHFHRDITNAEVREKYSHLQNDEKSQDMITVAGRVYSSRNSG--MFMDI 81 (502)
Q Consensus 4 ~~~~~~~~~~~~~~R~~kl~~l~~~~~~pyP~~f~~t~~~~e~~~~~~~l~~~~~~~~~V~i~Grv~~~R~~G--~Fi~L 81 (502)
T Consensus 609 ~~~~~~~~peq~rvr~~k~~~l~~~g~~pypv~~~RTHT~~e~~~--------~~~G~~VtvaGwV~r~RDhGgl~FidL 680 (1099)
T PRK02983 609 TDDPPPRLPEQVRVRLAKLDALRESGVDAYPVGRPPSHTVAQALA--------APDGEEVSVSGRVLRIRDYGGVLFAQL 680 (1099)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC--------CCCCCEEEEEEEEEEEECCCCEEEEEE
T ss_conf 777767884999999999999997599999999999741666424--------799998999987999843788699997
Q ss_pred ECCCCEEEEEEECCCCCHHHHHHH-HHCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 779935999980542796788887-4237431689965763056655342122012211355543222125311445420
Q gi|254781118|r 82 HDASGKIQIFTHKDTADQDSQNLL-SMIDIGDIIGITGQVRRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDVEIRYR 160 (502)
Q Consensus 82 rD~~g~iQv~~~~~~~~~~~~~~~-~~l~~gd~i~v~G~v~~~~~gelei~~~~~~~l~~~~~~lP~~~~~~~d~e~rl~ 160 (502)
T Consensus 681 RD~~G~iQvv~~~d~~g~~~~~~~~~~vdlGDvI~V~G~V~~t~tGEisV~a~~~~vlsKsL~PLP~k~~gl~d~E~RlR 760 (1099)
T PRK02983 681 RDWSGELQVLLDNSRLGQGRLADFTAAVDLGDLIEATGTMGASRNGTPSLLVTSWRLIGKCLRPLPDKWKGLTDPEARVR 760 (1099)
T ss_pred EECCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 41887679999777567689999876257788799985886278984579974899840456799976779887767556
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 11001234444433578899999999873855345431156532356665542036412222254321001223444421
Q gi|254781118|r 161 KRYLDIISNSDSKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELYLKRVL 240 (502)
Q Consensus 161 ~R~LDl~~~~~~~~~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~~g~~~~~F~~~~~~~~~~~yL~qSpql~~k~l~ 240 (502)
T Consensus 761 ~RYLDLr~npe~r~~~~~RS~Vi~aiR~~L~~~GFlEVETPiLq~~~GGA~ARPFlThsna~d~~~YLriAPELflKRLm 840 (1099)
T PRK02983 761 ARYLDLAVNPEARDLIRARSAVLRAVRETLVAKGFLEVETPILQQIHGGANARPFLTHINAYDLDLYLRIAPELYLKRLC 840 (1099)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHH
T ss_conf 45565158989999999999999999999987898895575467788875678530103367866145148089999998
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCEEECCCC
Q ss_conf 024302454345320254234432452100010011000111245678999988998708861-----311753411332
Q gi|254781118|r 241 ISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGTTD-----IPFGEKVISFKA 315 (502)
Q Consensus 241 ~~G~~drvfeI~~~FR~E~~~~~H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~~~~~-----~~~~~~~~d~~~ 315 (502)
T Consensus 841 VGGf-eRVFEI~RcFRNEglradHnPEFTmLE~Y~Ay~Dyedmm~ltEeLi~~~a~~~~G~~v~~~pd~~~~~~~iDls~ 919 (1099)
T PRK02983 841 VGGV-ERVFELGRAFRNEGVDFSHNPEFTLLEAYQAHADYLVMRDLCRELIQNAAQAANGEPVVMRPGTDGVLEPVDISG 919 (1099)
T ss_pred HCCC-CCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCEEEECCC
T ss_conf 6486-311343254467999987494079999999847899999999999999999951965786168778876865699
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHEECCEEEECCCHHHHHHHCC
Q ss_conf 21000000023344886215433216777656520235433223189998876521301010543565580023453035
Q gi|254781118|r 316 PFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVENDALWGEVMMTIFEEKIEKNIVNPTHITDFPKDISPFAKE 395 (502)
Q Consensus 316 ~f~~~~~~e~i~~~~g~~~~~~~~~e~~~~~~~~~g~~~~~~~~~g~l~~~~~e~~ie~~~~~p~fI~dfP~~~~Pf~~~ 395 (502)
T Consensus 920 ~w~~~t~~eai~e~~G~di~~~~~~e~L~~~a~~~gi~~~~~~~~G~lv~eL~e~lVE~~l~~PtFV~DfP~e~sPLarp 999 (1099)
T PRK02983 920 EWPVKTVHEAVSEALGEEIDADTPLETLRRLCDAAGIPYLTHWDAGAVVLELYEHLVEDRTTEPTFYTDFPTSVSPLTRP 999 (1099)
T ss_pred CCEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 95265399999998388789999999999999977997789999779999999985273766778998997223904177
Q ss_pred CCCCHHHEEECCEEECCEEEEECHHEECCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHCCCCCCCCEECCHHHHH
Q ss_conf 796721101113555578720021100579999999999998873-0573354508999997608698461324689998
Q gi|254781118|r 396 VAGEKRLVERFETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSH-QRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLI 474 (502)
Q Consensus 396 ~~~~~~~~~~fdl~~~G~Ei~~G~~e~~dp~~q~~r~~~~~~~~~-~~~~~~~~~~~yl~a~~yG~PPhgG~glGldRL~ 474 (502)
T Consensus 1000 ~~~dp~lAeRfDLvinG~ELgnGysELnDP~eQR~Rf~eQ~~~~~ggD~Eam~~DEdFL~ALeYGmPPhGGialGIDRLV 1079 (1099)
T PRK02983 1000 HRSDPGVAERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEYAMPPTGGLGMGVDRLV 1079 (1099)
T ss_pred CCCCCCEEEEEEEEECCEEEECCHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHCCCCCCCCCEEEHHHHHH
T ss_conf 89996827877255558997021035169999999999999998679900233217899984318997364754499999
Q ss_pred HHHCCCCCCEECCCCCCCCCC
Q ss_conf 998262884041278675766
Q gi|254781118|r 475 MLLTNAPSIRDVILFPAQRVK 495 (502)
Q Consensus 475 m~l~g~~~IRdvi~FP~~k~~ 495 (502)
T Consensus 1080 MLLTG~-SIREVIaFPl~kP~ 1099 (1099)
T PRK02983 1080 MLITGR-SIRETLPFPLAKPR 1099 (1099)
T ss_pred HHHCCC-CHHHHCCCCCCCCC
T ss_conf 996299-75987438787998