HHsearch alignment for GI: 254781118 and conserved domain: PRK09350
>PRK09350 lysyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=0 Score=617.76 Aligned_cols=307 Identities=33% Similarity=0.535 Sum_probs=266.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCEEEEE----CCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 4444335788999999998738553454311565323566-6554203641----2222254321001223444421024
Q gi|254781118|r 169 NSDSKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYG-GATADPFKTH----HNILKADMYLRIAPELYLKRVLISG 243 (502)
Q Consensus 169 ~~~~~~~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~~-g~~~~~F~~~----~~~~~~~~yL~qSpql~~k~l~~~G 243 (502)
T Consensus 9 ~~as~~~l~~Rs~i~~~iR~ff~~~gFlEVeTP~L~~~t~~~~~~~~f~~~~~~~~~~~~~~~yL~~SPql~~k~l~~~G 88 (325)
T PRK09350 9 PSASIKNLLKRAAIIAEIRRFFADRGVLEVETPAMSQATVTDIHLVPFETRFVGPGHSQGKTLWLMTSPEYHMKRLLAAG 88 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCHHHHHHHHHHCC
T ss_conf 71479999999999999999999889689779842577887646762221025655456766455079199999998667
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEE
Q ss_conf 30245434532025423443245210001001100011124567899998899870886131175341133221000000
Q gi|254781118|r 244 LTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGTTDIPFGEKVISFKAPFACKSML 323 (502)
Q Consensus 244 ~~drvfeI~~~FR~E~~~~~H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~~~~~~~~~~~~~d~~~~f~~~~~~ 323 (502)
T Consensus 89 ~-~rvfqI~~~FR~E~~~~~H~pEFtmlE~~~~~~d~~d~m~~~e~ll~~~~~~-----------------~~~~~~~~~ 150 (325)
T PRK09350 89 S-GPIFQLCRSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC-----------------PPAESLSYQ 150 (325)
T ss_pred C-CCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-----------------CCCCEEEHH
T ss_conf 8-8558961132289998765737788899981548999999999999999748-----------------985264199
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHCCCHHEE--CCEEEECCCHHHHHHHCCCCCC
Q ss_conf 023344886215433216777656520235--433223189998876521301010--5435655800234530357967
Q gi|254781118|r 324 QLVKEATGLDFMLLKSDQEARVAAQSIGIT--VENDALWGEVMMTIFEEKIEKNIV--NPTHITDFPKDISPFAKEVAGE 399 (502)
Q Consensus 324 e~i~~~~g~~~~~~~~~e~~~~~~~~~g~~--~~~~~~~g~l~~~~~e~~ie~~~~--~p~fI~dfP~~~~Pf~~~~~~~ 399 (502)
T Consensus 151 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ve~~l~~~~P~fv~d~P~~~~~~~~~~~~d 229 (325)
T PRK09350 151 QAFLRYLGIDPLSA-DKTQLREVAAKLDLSNIADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQAALAQISTED 229 (325)
T ss_pred HHHHHHHCCCCCCC-CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHCCCCCC
T ss_conf 99999819996548-88999999997499756675347879999999998887507658769955843337032358789
Q ss_pred HHHEEECCEEECCEEEEECHHEECCHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHCCCCCCCCEECCHHHHHHHHC
Q ss_conf 21101113555578720021100579999999999998873057335-45089999976086984613246899989982
Q gi|254781118|r 400 KRLVERFETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSHQRGEHT-ILDEDFLDAMTYGMPPASGLGLGIDRLIMLLT 478 (502)
Q Consensus 400 ~~~~~~fdl~~~G~Ei~~G~~e~~dp~~q~~r~~~~~~~~~~~~~~~-~~~~~yl~a~~yG~PPhgG~glGldRL~m~l~ 478 (502)
T Consensus 230 ~~~a~rfdl~~~G~El~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~yG~PPhgG~glGlDRLvm~l~ 309 (325)
T PRK09350 230 HRVAERFEVYFKGIELANGFHELTDAREQLQRFEQDNRKRAARGLPQQPIDQNLIAALKAGLPDCSGVALGVDRLIMLAL 309 (325)
T ss_pred CCHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHH
T ss_conf 85223210104878966764566899999999999999998579980055899999966799998357655999999981
Q ss_pred CCCCCEECCCCCCCCC
Q ss_conf 6288404127867576
Q gi|254781118|r 479 NAPSIRDVILFPAQRV 494 (502)
Q Consensus 479 g~~~IRdvi~FP~~k~ 494 (502)
T Consensus 310 g~~~IRdvi~FP~dR~ 325 (325)
T PRK09350 310 GAESIAEVIAFPVDRA 325 (325)
T ss_pred CCCCHHHEECCCCCCC
T ss_conf 8993887107885549