HHsearch alignment for GI: 254781118 and conserved domain: PRK12445
>PRK12445 lysyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=1058.05 Aligned_cols=494 Identities=44% Similarity=0.762 Sum_probs=462.2
Q ss_pred CCCCCC----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC--CCCEEEEEEEECCCCC
Q ss_conf 988757----2016879999999999999983888788876788859999986515555643--5988999868811148
Q gi|254781118|r 1 MNNTLT----PESLSSNSIEVRSQKLNMLRKSLAEVYPAHFHRDITNAEVREKYSHLQNDEK--SQDMITVAGRVYSSRN 74 (502)
Q Consensus 1 m~~~~~----~~~~~~~~~~~R~~kl~~l~~~~~~pyP~~f~~t~~~~e~~~~~~~l~~~~~--~~~~V~i~Grv~~~R~ 74 (502)
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~r~~kl~~l~~~g~-~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrv~~~R~ 79 (505)
T PRK12445 1 MSEQETRGANEAIDFNDELRNRREKLAALRQQGV-AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRI 79 (505)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEC
T ss_conf 9866778876889832999999999999997199-999989587709999998545684100147988999988987874
Q ss_pred CC--CEEEEECCCCEEEEEEECCCCCHHHH-HHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 77--21899779935999980542796788-8874237431689965763056655342122012211355543222125
Q gi|254781118|r 75 SG--MFMDIHDASGKIQIFTHKDTADQDSQ-NLLSMIDIGDIIGITGQVRRTKRGELTVNAQKIIMLSKALNSIPETYYG 151 (502)
Q Consensus 75 ~G--~Fi~LrD~~g~iQv~~~~~~~~~~~~-~~~~~l~~gd~i~v~G~v~~~~~gelei~~~~~~~l~~~~~~lP~~~~~ 151 (502)
T Consensus 80 ~Gk~~F~~LrD~~G~iQ~~~~~~~~~~~~~~~~~~~~~~gdii~v~G~~~~t~tGe~~i~~~~~~ilsksl~plP~k~~g 159 (505)
T PRK12445 80 MGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHG 159 (505)
T ss_pred CCCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCC
T ss_conf 79839999985984399999588686689999975121534999963660478776212578999934777898974557
Q ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 31144542011001234444433578899999999873855345431156532356665542036412222254321001
Q gi|254781118|r 152 LSDVEIRYRKRYLDIISNSDSKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIA 231 (502)
Q Consensus 152 ~~d~e~rl~~R~LDl~~~~~~~~~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~~g~~~~~F~~~~~~~~~~~yL~qS 231 (502)
T Consensus 160 ~~d~e~R~r~RyLDLir~~~~~~~~~~Rs~ii~~iR~~l~~~gF~EVeTPil~~~~gGa~Arpf~t~~~~~~~~~yL~qS 239 (505)
T PRK12445 160 LQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIA 239 (505)
T ss_pred CCCHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCEEECCC
T ss_conf 87887763411114365999999999999999999999997793899788755545876661033046678867434169
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 22344442102430245434532025423443245210001001100011124567899998899870886131175341
Q gi|254781118|r 232 PELYLKRVLISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGTTDIPFGEKVI 311 (502)
Q Consensus 232 pql~~k~l~~~G~~drvfeI~~~FR~E~~~~~H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~~~~~~~~~~~~~ 311 (502)
T Consensus 240 PQLykk~LmvgGf-dRvfeI~r~FRnE~~~~~H~PEFT~lE~e~af~d~~dvm~l~E~li~~i~~~v~g~~~i~y~~~~~ 318 (505)
T PRK12445 240 PELYLKRLVVGGF-ERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVF 318 (505)
T ss_pred CHHHHHHHHHCCC-CCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHH
T ss_conf 3999999985797-445762787607888866544454356876327898999999999999999844883586652012
Q ss_pred CCCCCCCEEEEECCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHEECCEEEECCCHHHH
Q ss_conf 133221000000023344-8862154332167776565202354332231899988765213010105435655800234
Q gi|254781118|r 312 SFKAPFACKSMLQLVKEA-TGLDFMLLKSDQEARVAAQSIGITVENDALWGEVMMTIFEEKIEKNIVNPTHITDFPKDIS 390 (502)
Q Consensus 312 d~~~~f~~~~~~e~i~~~-~g~~~~~~~~~e~~~~~~~~~g~~~~~~~~~g~l~~~~~e~~ie~~~~~p~fI~dfP~~~~ 390 (502)
T Consensus 319 d~~~pf~rlt~~eai~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~e~~e~~l~~P~fv~d~P~e~s 398 (505)
T PRK12445 319 DFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVS 398 (505)
T ss_pred CCCCCCCCCCHHHHHHHHCCCCCHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 01698410349999998568887453344699999999859853444344279999988777750555542447754458
Q ss_pred HHHCCCCCCHHHEEECCEEECCEEEEECHHEECCHHHHHHHHHHHHHHH-HCCCCCCCCCHHHHHHHHCCCCCCCCEECC
Q ss_conf 5303579672110111355557872002110057999999999999887-305733545089999976086984613246
Q gi|254781118|r 391 PFAKEVAGEKRLVERFETYCNGWEICNAFSELNDPVEQRIRMEQQVEQS-HQRGEHTILDEDFLDAMTYGMPPASGLGLG 469 (502)
Q Consensus 391 Pf~~~~~~~~~~~~~fdl~~~G~Ei~~G~~e~~dp~~q~~r~~~~~~~~-~~~~~~~~~~~~yl~a~~yG~PPhgG~glG 469 (502)
T Consensus 399 plak~~~~~p~~t~rfdl~i~G~Ei~nG~~el~Dp~~Q~~rf~~q~~~k~~g~~e~~~~de~fl~Al~yG~PPhgG~glG 478 (505)
T PRK12445 399 PLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIG 478 (505)
T ss_pred CHHCCCCCCHHHHHEEEEEECCEEEEECEECCCCHHHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHCCCCCHHCCHHH
T ss_conf 30016799841401453511899987460226899999999999887775476600012288999965699850034379
Q ss_pred HHHHHHHHCCCCCCEECCCCCCCCCCC
Q ss_conf 899989982628840412786757667
Q gi|254781118|r 470 IDRLIMLLTNAPSIRDVILFPAQRVKN 496 (502)
Q Consensus 470 ldRL~m~l~g~~~IRdvi~FP~~k~~~ 496 (502)
T Consensus 479 iDRLvMlLtg~~sIRdVI~FP~~rp~~ 505 (505)
T PRK12445 479 IDRMIMLFTNSHTIRDVILFPAMRPQK 505 (505)
T ss_pred HHHHHHHHCCCCCHHEECCCCCCCCCC
T ss_conf 999999981999564071699989999