HHsearch alignment for GI: 254781118 and conserved domain: TIGR02367
>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. .
Probab=98.89 E-value=4.3e-10 Score=84.25 Aligned_cols=110 Identities=28% Similarity=0.459 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------CCCCCEEEEECCCCCCCCCCCH--HHHHHH-----HHHH
Q ss_conf 8999999998738553454311565323566----------6554203641222225432100--122344-----4421
Q gi|254781118|r 178 QRSLLISQIRHFMEKKGFMEVETPILQPIYG----------GATADPFKTHHNILKADMYLRI--APELYL-----KRVL 240 (502)
Q Consensus 178 ~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~~----------g~~~~~F~~~~~~~~~~~yL~q--Spql~~-----k~l~ 240 (502)
T Consensus 241 ylGkler~it~ffvdrGfleiksPiliP~ey~ermGi~ndtelskqifrv-----dkn~ClrPmlaP~lynylrkldr~l 315 (453)
T TIGR02367 241 YLGKLEREITKFFVDRGFLEIKSPILIPLEYVERMGIDNDTELSKQIFRV-----DKNLCLRPMLAPTLYNYLRKLDRIL 315 (453)
T ss_pred HHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 75467666766653124023236310105688650776402566666644-----1001012100056899999987537
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHH
Q ss_conf 0243024543453202542344324521000100110--00111245678999988
Q gi|254781118|r 241 ISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAY--TDYRDMMKLVEDLCHNL 294 (502)
Q Consensus 241 ~~G~~drvfeI~~~FR~E~~~~~H~pEFt~lE~e~a~--~d~~dim~l~E~li~~i 294 (502)
T Consensus 316 P-~P-ik~fe~GPCyrkesdGkehleeftm~nfCqmGsGCtrenle~~i~~fl~~l 369 (453)
T TIGR02367 316 P-DP-IKVFEVGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEALIKEFLDYL 369 (453)
T ss_pred C-CC-EEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8-96-479860675243565335666666555431478732677999999988761