HHsearch alignment for GI: 254781118 and conserved domain: TIGR02367
>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. .
Probab=90.47 E-value=0.086 Score=30.73 Aligned_cols=113 Identities=18% Similarity=0.303 Sum_probs=67.7
Q ss_pred HHCCCHHEECCEEEECCCHHHHHHHCCCCCCHHHEEECCEEECCEEEEECHHEECCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 52130101054356558002345303579672110111355557872002110057999999999999887305733545
Q gi|254781118|r 369 EEKIEKNIVNPTHITDFPKDISPFAKEVAGEKRLVERFETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSHQRGEHTIL 448 (502)
Q Consensus 369 e~~ie~~~~~p~fI~dfP~~~~Pf~~~~~~~~~~~~~fdl~~~G~Ei~~G~~e~~dp~~q~~r~~~~~~~~~~~~~~~~~ 448 (502)
T Consensus 308 lrkldr~lP~Pik~fe----~GPCyrkesdGkehleeftm-~nfCqmGsGCtrenle~~i~~fl~~l~idf~ivGdsCmv 382 (453)
T TIGR02367 308 LRKLDRILPDPIKVFE----VGPCYRKESDGKEHLEEFTM-LNFCQMGSGCTRENLEALIKEFLDYLEIDFKIVGDSCMV 382 (453)
T ss_pred HHHHHHHCCCCEEEEE----ECCCCCCCCCCHHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEECCEEEE
T ss_conf 9998753789647986----06752435653356666665-554314787326779999999887615424785242465
Q ss_pred CHHHHH------------------HHHCCC-CCCCCEECCHHHHHHHHCCCCCCEEC
Q ss_conf 089999------------------976086-98461324689998998262884041
Q gi|254781118|r 449 DEDFLD------------------AMTYGM-PPASGLGLGIDRLIMLLTNAPSIRDV 486 (502)
Q Consensus 449 ~~~yl~------------------a~~yG~-PPhgG~glGldRL~m~l~g~~~IRdv 486 (502)
T Consensus 383 yGdtld~mhGdlelssavvGP~~ldreWGidkPWiGaGfGlerllkv~h~fknikra 439 (453)
T TIGR02367 383 YGDTLDVMHGDLELSSAVVGPVSLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA 439 (453)
T ss_pred ECCHHEEEECCHHHCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 335010001320000002236322301378887212532367888776323455454