HHsearch alignment for GI: 254781118 and conserved domain: cd00769
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=94.04 E-value=0.069 Score=31.34 Aligned_cols=78 Identities=24% Similarity=0.320 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCC-----CCCCCCEEEEECCCCCCC-CCCCHH--HHHHHHHHH---CCCC-CHH
Q ss_conf 9999999873855345431156532356-----665542036412222254-321001--223444421---0243-024
Q gi|254781118|r 180 SLLISQIRHFMEKKGFMEVETPILQPIY-----GGATADPFKTHHNILKAD-MYLRIA--PELYLKRVL---ISGL-TDQ 247 (502)
Q Consensus 180 s~i~~~iR~~l~~~gF~EveTP~L~~~~-----~g~~~~~F~~~~~~~~~~-~yL~qS--pql~~k~l~---~~G~-~dr 247 (502)
T Consensus 3 ~~l~~~ir~~L~~~Gf~Ev~t~s~~~~~~~~~~~~~~~~~i~l~-NPls~e~~~lR~sLlp~LL-~~~~~N~~r~~~~~~ 80 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVELS-NPLSEEYSVLRTSLLPGLL-DALARNLNRKNKPLR 80 (198)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCEEEEE-CCCCHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCE
T ss_conf 79999999999978971413067689899987248878738970-8865668898887799999-999865056777732
Q ss_pred HHHHHHHHCCCC
Q ss_conf 543453202542
Q gi|254781118|r 248 VFELNRNFRNEG 259 (502)
Q Consensus 248 vfeI~~~FR~E~ 259 (502)
T Consensus 81 lFEiG~vy~~~~ 92 (198)
T cd00769 81 LFEIGRVFLKDE 92 (198)
T ss_pred EEEEEEEEECCC
T ss_conf 899763896688