HHsearch alignment for GI: 254781118 and conserved domain: cd00770
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=98.14 E-value=1.7e-06 Score=61.09 Aligned_cols=119 Identities=23% Similarity=0.284 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCC-------CEEEEECCCCCCCCCCCHHHHH-----HHHHHHC
Q ss_conf 578899999999873855345431156532356-66554-------2036412222254321001223-----4444210
Q gi|254781118|r 175 RFQQRSLLISQIRHFMEKKGFMEVETPILQPIY-GGATA-------DPFKTHHNILKADMYLRIAPEL-----YLKRVLI 241 (502)
Q Consensus 175 ~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~-~g~~~-------~~F~~~~~~~~~~~yL~qSpql-----~~k~l~~ 241 (502)
T Consensus 51 ga~Le~AL~~f~~d~~~~~Gy~eV~tP~iv~~~~~~~sG~~~~~~e~~y~i~----~~~~~Li~tae~~l~~~~~~~~~~ 126 (297)
T cd00770 51 GALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE----GEDLYLIATAEVPLAALHRDEILE 126 (297)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCC----CHHHHHHHCCCCCEEEEEEEEECC
T ss_conf 9999999999999999987998998853013899854357876356521035----505555440566622344200317
Q ss_pred -CCCCHHHHHHHHHHCCCCCC----C---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf -24302454345320254234----4---3245210001001100011124567899998899870
Q gi|254781118|r 242 -SGLTDQVFELNRNFRNEGVS----S---RHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLH 299 (502)
Q Consensus 242 -~G~~drvfeI~~~FR~E~~~----~---~H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~ 299 (502)
T Consensus 127 ~~dLPlr~~~~s~cfR~Eags~G~d~~GL~RvhqF~kvE~~~-~c~pe~s~~~~e~~~~~~-e~~l 190 (297)
T cd00770 127 EEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEESWEELEELISNA-EEIL 190 (297)
T ss_pred HHHCCCCEEECCCHHHHCCCCCCCCCCCEEEEEECCEEEEEE-ECCHHHHHHHHHHHHHHH-HHHH
T ss_conf 755886502246341320377775555457887211003776-168788999999999999-9999