HHsearch alignment for GI: 254781118 and conserved domain: cd00775
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=0 Score=679.66 Aligned_cols=325 Identities=52% Similarity=0.879 Sum_probs=300.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 44443357889999999987385534543115653235666554203641222225432100122344442102430245
Q gi|254781118|r 169 NSDSKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELYLKRVLISGLTDQV 248 (502)
Q Consensus 169 ~~~~~~~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~~g~~~~~F~~~~~~~~~~~yL~qSpql~~k~l~~~G~~drv 248 (502)
T Consensus 1 n~~~~~~~~~Rs~i~~~iR~ff~~~gF~Ev~TPiL~~~~~g~~~~~f~~~~~~~~~~~yL~qSpQl~~q~l~~~g~-~rv 79 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGF-ERV 79 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCC-CCE
T ss_conf 9789999999999999999999988988997986556688756753132244678672306898999999985677-767
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEECCCCC
Q ss_conf 43453202542344324521000100110001112456789999889987088613117534113322100000002334
Q gi|254781118|r 249 FELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGTTDIPFGEKVISFKAPFACKSMLQLVKE 328 (502)
Q Consensus 249 feI~~~FR~E~~~~~H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~~~~~~~~~~~~~d~~~~f~~~~~~e~i~~ 328 (502)
T Consensus 80 fqI~p~FR~E~~~~rHl~EFtmle~E~~f~d~~dvm~~~E~li~~i~~~~~~~~~~~~~~~~~d~~~pf~rit~~ea~~~ 159 (329)
T cd00775 80 YEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEYGGKELDFTPPFKRVTMVDALKE 159 (329)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99810224799997747345634577744799999999999999999998388753146612356899743769999999
Q ss_pred CCCCCCCCCCCHHH---HHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHEECCEEEECCCHHHHHHHCCCCCCHHHEEE
Q ss_conf 48862154332167---776565202354332231899988765213010105435655800234530357967211011
Q gi|254781118|r 329 ATGLDFMLLKSDQE---ARVAAQSIGITVENDALWGEVMMTIFEEKIEKNIVNPTHITDFPKDISPFAKEVAGEKRLVER 405 (502)
Q Consensus 329 ~~g~~~~~~~~~e~---~~~~~~~~g~~~~~~~~~g~l~~~~~e~~ie~~~~~p~fI~dfP~~~~Pf~~~~~~~~~~~~~ 405 (502)
T Consensus 160 ~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~p~fi~dyP~~~~pf~~~~~~~~~~~~~ 239 (329)
T cd00775 160 KTGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDKLFEEFVEPTLIQPTFIIDHPVEISPLAKRHRSNPGLTER 239 (329)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCHHHCCCCCCCEEEE
T ss_conf 85899876673238999999877568665678778999999999999751379689947701118443129999770100
Q ss_pred CCEEECCEEEEECHHEECCHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHCCCCCCCCEECCHHHHHHHHCCCCCCE
Q ss_conf 1355557872002110057999999999999887305-733545089999976086984613246899989982628840
Q gi|254781118|r 406 FETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSHQR-GEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNAPSIR 484 (502)
Q Consensus 406 fdl~~~G~Ei~~G~~e~~dp~~q~~r~~~~~~~~~~~-~~~~~~~~~yl~a~~yG~PPhgG~glGldRL~m~l~g~~~IR 484 (502)
T Consensus 240 fdl~~~G~Ei~~G~~el~d~~~q~~r~~~~~~~~~~~~~~~~~~de~yl~a~k~G~pPhgG~glGldRLvm~l~g~~nIR 319 (329)
T cd00775 240 FELFICGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLTDSNSIR 319 (329)
T ss_pred CCCCCCCEEEECCEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCHHH
T ss_conf 12456877984153311799999999999999985467511242399999966799986114099999999993898187
Q ss_pred ECCCCCCCCC
Q ss_conf 4127867576
Q gi|254781118|r 485 DVILFPAQRV 494 (502)
Q Consensus 485 dvi~FP~~k~ 494 (502)
T Consensus 320 dvi~FP~~r~ 329 (329)
T cd00775 320 DVILFPAMRP 329 (329)
T ss_pred HCCCCCCCCC
T ss_conf 5137999897