HHsearch alignment for GI: 254781118 and conserved domain: cd00775

>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00  E-value=0  Score=679.66  Aligned_cols=325  Identities=52%  Similarity=0.879  Sum_probs=300.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf             44443357889999999987385534543115653235666554203641222225432100122344442102430245
Q gi|254781118|r  169 NSDSKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELYLKRVLISGLTDQV  248 (502)
Q Consensus       169 ~~~~~~~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~~g~~~~~F~~~~~~~~~~~yL~qSpql~~k~l~~~G~~drv  248 (502)
T Consensus         1 n~~~~~~~~~Rs~i~~~iR~ff~~~gF~Ev~TPiL~~~~~g~~~~~f~~~~~~~~~~~yL~qSpQl~~q~l~~~g~-~rv   79 (329)
T cd00775           1 NEEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGF-ERV   79 (329)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCC-CCE
T ss_conf             9789999999999999999999988988997986556688756753132244678672306898999999985677-767


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEECCCCC
Q ss_conf             43453202542344324521000100110001112456789999889987088613117534113322100000002334
Q gi|254781118|r  249 FELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGTTDIPFGEKVISFKAPFACKSMLQLVKE  328 (502)
Q Consensus       249 feI~~~FR~E~~~~~H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~~~~~~~~~~~~~d~~~~f~~~~~~e~i~~  328 (502)
T Consensus        80 fqI~p~FR~E~~~~rHl~EFtmle~E~~f~d~~dvm~~~E~li~~i~~~~~~~~~~~~~~~~~d~~~pf~rit~~ea~~~  159 (329)
T cd00775          80 YEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEYGGKELDFTPPFKRVTMVDALKE  159 (329)
T ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             99810224799997747345634577744799999999999999999998388753146612356899743769999999


Q ss_pred             CCCCCCCCCCCHHH---HHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHEECCEEEECCCHHHHHHHCCCCCCHHHEEE
Q ss_conf             48862154332167---776565202354332231899988765213010105435655800234530357967211011
Q gi|254781118|r  329 ATGLDFMLLKSDQE---ARVAAQSIGITVENDALWGEVMMTIFEEKIEKNIVNPTHITDFPKDISPFAKEVAGEKRLVER  405 (502)
Q Consensus       329 ~~g~~~~~~~~~e~---~~~~~~~~g~~~~~~~~~g~l~~~~~e~~ie~~~~~p~fI~dfP~~~~Pf~~~~~~~~~~~~~  405 (502)
T Consensus       160 ~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~p~fi~dyP~~~~pf~~~~~~~~~~~~~  239 (329)
T cd00775         160 KTGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDKLFEEFVEPTLIQPTFIIDHPVEISPLAKRHRSNPGLTER  239 (329)
T ss_pred             HHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCHHHCCCCCCCEEEE
T ss_conf             85899876673238999999877568665678778999999999999751379689947701118443129999770100


Q ss_pred             CCEEECCEEEEECHHEECCHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHCCCCCCCCEECCHHHHHHHHCCCCCCE
Q ss_conf             1355557872002110057999999999999887305-733545089999976086984613246899989982628840
Q gi|254781118|r  406 FETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSHQR-GEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNAPSIR  484 (502)
Q Consensus       406 fdl~~~G~Ei~~G~~e~~dp~~q~~r~~~~~~~~~~~-~~~~~~~~~yl~a~~yG~PPhgG~glGldRL~m~l~g~~~IR  484 (502)
T Consensus       240 fdl~~~G~Ei~~G~~el~d~~~q~~r~~~~~~~~~~~~~~~~~~de~yl~a~k~G~pPhgG~glGldRLvm~l~g~~nIR  319 (329)
T cd00775         240 FELFICGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLTDSNSIR  319 (329)
T ss_pred             CCCCCCCEEEECCEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCHHH
T ss_conf             12456877984153311799999999999999985467511242399999966799986114099999999993898187


Q ss_pred             ECCCCCCCCC
Q ss_conf             4127867576
Q gi|254781118|r  485 DVILFPAQRV  494 (502)
Q Consensus       485 dvi~FP~~k~  494 (502)
T Consensus       320 dvi~FP~~r~  329 (329)
T cd00775         320 DVILFPAMRP  329 (329)
T ss_pred             HCCCCCCCCC
T ss_conf             5137999897