>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.

Probab=100.00 E-value=0 Score=527.99 Aligned_cols=278 Identities=30% Similarity=0.525 Sum_probs=211.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 7889999999987385534543115653235666554203641222225432-100122344442102430245434532 Q gi|254781118|r 176 FQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMY-LRIAPELYLKRVLISGLTDQVFELNRN 254 (502) Q Consensus 176 l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~~g~~~~~F~~~~~~~~~~~y-L~qSpql~~k~l~~~G~~drvfeI~~~ 254 (502) T Consensus 1 lr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~ega~~-f~~~~~~~~~~~~~L~~Spel~~k~l~~~g~-~rvf~i~~~ 78 (280) T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSRLHPGKFYALPQSPQLFKQLLMVSGF-DRYFQIARC 78 (280) T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC-CEECCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCEEEECE T ss_conf 96699999999999998898998798106878776766-4424416887603688798999999985687-775798451 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCC Q ss_conf 02542344324521000100110001112456789999889987088613117534113322100000002334488621 Q gi|254781118|r 255 FRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGTTDIPFGEKVISFKAPFACKSMLQLVKEATGLDF 334 (502) Q Consensus 255 FR~E~~~~~H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~~~~~~~~~~~~~d~~~~f~~~~~~e~i~~~~g~~~ 334 (502) T Consensus 79 FR~E~~~~~h~~EFtmLE~e~~~~~~~d~m~~~E~li~~i~~~~~~----------~~~~~~~~rity~ea~~~~-g~~~ 147 (280) T cd00777 79 FRDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLG----------VELTTPFPRMTYAEAMERY-GFKF 147 (280) T ss_pred ECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC----------CCCCCCCCEEEHHHHHHHH-CCCC T ss_conf 7478888766347762344226888999999999999999999819----------8779997577688999986-8973 Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHEECCEEEECCCHHHHHHHCCCCCCHHHEEECCEEECCEE Q ss_conf 54332167776565202354332231899988765213010105435655800234530357967211011135555787 Q gi|254781118|r 335 MLLKSDQEARVAAQSIGITVENDALWGEVMMTIFEEKIEKNIVNPTHITDFPKDISPFAKEVAGEKRLVERFETYCNGWE 414 (502) Q Consensus 335 ~~~~~~e~~~~~~~~~g~~~~~~~~~g~l~~~~~e~~ie~~~~~p~fI~dfP~~~~Pf~~~~~~~~~~~~~fdl~~~G~E 414 (502) T Consensus 148 ~~~~-d-----------~~~---~~~~----~~~~~~~~~~--~p-f--~~p~~~~~~~~~~~p~~~~~~~fdl~~~G~E 203 (280) T cd00777 148 LWIV-D-----------FPL---FEWD----EEEGRLVSAH--HP-F--TAPKEEDLDLLEKDPEDARAQAYDLVLNGVE 203 (280) T ss_pred CCCC-C-----------CCC---CCCC----HHHCCCCCCC--CC-C--CCCCHHHHHHHHCCCHHHHHHHHCCCCCCEE T ss_conf 3113-5-----------753---3462----4425522220--77-3--4782441677633802456777413568644 Q ss_pred EEECHHEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCEECCHHHHHHHHCCCCCCEECCCCCCCC Q ss_conf 2002110057999999999999887305733545089999976086984613246899989982628840412786757 Q gi|254781118|r 415 ICNAFSELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNAPSIRDVILFPAQR 493 (502) Q Consensus 415 i~~G~~e~~dp~~q~~r~~~~~~~~~~~~~~~~~~~~yl~a~~yG~PPhgG~glGldRL~m~l~g~~~IRdvi~FP~~k 493 (502) T Consensus 204 l~nG~~r~~d~~~~~~~~~~~~~~~~---~~~~~~~~~l~a~~~G~pP~~G~glGiDRLvm~l~g~~~Irdvi~FPR~~ 279 (280) T cd00777 204 LGGGSIRIHDPDIQEKVFEILGLSEE---EAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAFPKTQ 279 (280) T ss_pred ECCCCCEECCHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCHHEEECCCCCC T ss_conf 23531022799999999998598966---77888999999976699987435158999999992898287073479999

HHsearch alignment for GI: 254781118 and conserved domain: cd00777