HHsearch alignment for GI: 254781118 and conserved domain: cd04100
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.63 E-value=1.5e-15 Score=119.32 Aligned_cols=78 Identities=31% Similarity=0.555 Sum_probs=70.6
Q ss_pred EEEEEEEECCCCCCC--CEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCC-----CCCCCCCCCE
Q ss_conf 899986881114877--218997799359999805427967888874237431689965763056-----6553421220
Q gi|254781118|r 62 MITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRRTK-----RGELTVNAQK 134 (502)
Q Consensus 62 ~V~i~Grv~~~R~~G--~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~~~-----~gelei~~~~ 134 (502)
T Consensus 1 ~V~v~Gwv~~~R~~g~~~Fi~lrD~~g~iQvv~~~~~~~~-~~~~~~~l~~es~I~v~G~v~~~~~~~~~~g~~Ei~~~~ 79 (85)
T cd04100 1 EVTLAGWVHSRRDHGGLIFIDLRDGSGIVQVVVNKEELGE-FFEEAEKLRTESVVGVTGTVVKRPEGNLATGEIELQAEE 79 (85)
T ss_pred CEEEEEEEEEEECCCCEEEEEEECCCCEEEEEECCCCCHH-HHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEE
T ss_conf 9999998790432898899585038950899991775857-887763589888999999999688777899889999939
Q ss_pred EEEECC
Q ss_conf 122113
Q gi|254781118|r 135 IIMLSK 140 (502)
Q Consensus 135 ~~~l~~ 140 (502)
T Consensus 80 i~il~~ 85 (85)
T cd04100 80 LEVLSK 85 (85)
T ss_pred EEEECC
T ss_conf 999869