HHsearch alignment for GI: 254781118 and conserved domain: cd04316

>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.86  E-value=2.6e-21  Score=156.54  Aligned_cols=102  Identities=25%  Similarity=0.381  Sum_probs=91.7

Q ss_pred             HCCCCCCCCCCCEEEEEEEECCCCCCC--CEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCCC--
Q ss_conf             515555643598899986881114877--2189977993599998054279678888742374316899657630566--
Q gi|254781118|r   50 YSHLQNDEKSQDMITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRRTKR--  125 (502)
Q Consensus        50 ~~~l~~~~~~~~~V~i~Grv~~~R~~G--~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~~~~--  125 (502)
T Consensus         2 ~~g~l~~~~~G~~V~i~Gwv~~~R~~g~~~Fi~LRD~~G~vQ~v~~~~~~~~~~~~~~~~l~~EsvV~V~G~V~~~~~~~   81 (108)
T cd04316           2 YSAEITPELDGEEVTVAGWVHEIRDLGGIKFVILRDREGIVQVTAPKKKVDKELFKTVRKLSRESVISVTGTVKAEPKAP   81 (108)
T ss_pred             CCCCCCHHHCCCEEEEEEEEEEEECCCCEEEEEEECCCEEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEEECCCCC
T ss_conf             34759838999999998999823217987999998098779999937888989999986599944999999999489899


Q ss_pred             CCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             55342122012211355543222125
Q gi|254781118|r  126 GELTVNAQKIIMLSKALNSIPETYYG  151 (502)
Q Consensus       126 gelei~~~~~~~l~~~~~~lP~~~~~  151 (502)
T Consensus        82 ~giEi~v~~i~ils~a~~plP~~~~~  107 (108)
T cd04316          82 NGVEIIPEEIEVLSEAKTPLPLDPTG  107 (108)
T ss_pred             CCEEEEEEEEEEEECCCCCCCCCCCC
T ss_conf             96758964899985889998968589