HHsearch alignment for GI: 254781118 and conserved domain: cd04320
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.69 E-value=2.3e-16 Score=124.58 Aligned_cols=89 Identities=18% Similarity=0.317 Sum_probs=78.7
Q ss_pred EEEEEEEECCCCCCC-C--EEEEECCCCEEEEEEEC--CCCCHHHHHHHHHCCCCEEEEEEEEEECCCC-------CCCC
Q ss_conf 899986881114877-2--18997799359999805--4279678888742374316899657630566-------5534
Q gi|254781118|r 62 MITVAGRVYSSRNSG-M--FMDIHDASGKIQIFTHK--DTADQDSQNLLSMIDIGDIIGITGQVRRTKR-------GELT 129 (502)
Q Consensus 62 ~V~i~Grv~~~R~~G-~--Fi~LrD~~g~iQv~~~~--~~~~~~~~~~~~~l~~gd~i~v~G~v~~~~~-------gele 129 (502)
T Consensus 1 ~V~~rGwv~~~R~~g~kl~Fl~LRd~~g~iQ~V~~~~~~~~s~~m~~~~~~l~~ESvV~V~G~V~~~~~~i~~~~~~~iE 80 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQDVE 80 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEEECCCEEEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCEE
T ss_conf 98999999720217971799999158718999998078877999999985599700999999998899755678868789
Q ss_pred CCCCEEEEECCCCCCCCCCCC
Q ss_conf 212201221135554322212
Q gi|254781118|r 130 VNAQKIIMLSKALNSIPETYY 150 (502)
Q Consensus 130 i~~~~~~~l~~~~~~lP~~~~ 150 (502)
T Consensus 81 i~i~~i~vls~a~~~LPf~v~ 101 (102)
T cd04320 81 LHIEKIYVVSEAAEPLPFQLE 101 (102)
T ss_pred EEEEEEEEEECCCCCCCCCCC
T ss_conf 999999999668999994126