HHsearch alignment for GI: 254781118 and conserved domain: cd04479
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=93.57 E-value=0.56 Score=25.49 Aligned_cols=69 Identities=13% Similarity=0.231 Sum_probs=50.3
Q ss_pred CCCCCEEEEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEE
Q ss_conf 43598899986881114877218997799359999805427967888874237431689965763056655342122012
Q gi|254781118|r 57 EKSQDMITVAGRVYSSRNSGMFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRRTKRGELTVNAQKII 136 (502)
Q Consensus 57 ~~~~~~V~i~Grv~~~R~~G~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~~~~gelei~~~~~~ 136 (502)
T Consensus 12 ~f~gk~VrivGkV~~~~g~~~~~~s~Dg-~~v~v~l~~~~----------~~~~~~~vEViG~V~----~~~~I~~~~~i 76 (101)
T cd04479 12 QFVGKTVRIVGKVEKVDGDSLTLISSDG-VNVTVELNRPL----------DLPISGYVEVIGKVS----PDLTIRVLSYI 76 (101)
T ss_pred HCCCCEEEEEEEEEEECCCEEEEEECCC-CEEEEEECCCC----------CCCCCCEEEEEEEEC----CCCEEEEEEEE
T ss_conf 5389869999999986598169992799-98999988998----------765685799999999----99969999998
Q ss_pred EECC
Q ss_conf 2113
Q gi|254781118|r 137 MLSK 140 (502)
Q Consensus 137 ~l~~ 140 (502)
T Consensus 77 ~~g~ 80 (101)
T cd04479 77 DFGD 80 (101)
T ss_pred ECCC
T ss_conf 7897