HHsearch alignment for GI: 254781118 and conserved domain: cd04479

>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=93.57  E-value=0.56  Score=25.49  Aligned_cols=69  Identities=13%  Similarity=0.231  Sum_probs=50.3

Q ss_pred             CCCCCEEEEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEE
Q ss_conf             43598899986881114877218997799359999805427967888874237431689965763056655342122012
Q gi|254781118|r   57 EKSQDMITVAGRVYSSRNSGMFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRRTKRGELTVNAQKII  136 (502)
Q Consensus        57 ~~~~~~V~i~Grv~~~R~~G~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~~~~gelei~~~~~~  136 (502)
T Consensus        12 ~f~gk~VrivGkV~~~~g~~~~~~s~Dg-~~v~v~l~~~~----------~~~~~~~vEViG~V~----~~~~I~~~~~i   76 (101)
T cd04479          12 QFVGKTVRIVGKVEKVDGDSLTLISSDG-VNVTVELNRPL----------DLPISGYVEVIGKVS----PDLTIRVLSYI   76 (101)
T ss_pred             HCCCCEEEEEEEEEEECCCEEEEEECCC-CEEEEEECCCC----------CCCCCCEEEEEEEEC----CCCEEEEEEEE
T ss_conf             5389869999999986598169992799-98999988998----------765685799999999----99969999998


Q ss_pred             EECC
Q ss_conf             2113
Q gi|254781118|r  137 MLSK  140 (502)
Q Consensus       137 ~l~~  140 (502)
T Consensus        77 ~~g~   80 (101)
T cd04479          77 DFGD   80 (101)
T ss_pred             ECCC
T ss_conf             7897