>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.

Probab=95.81 E-value=0.04 Score=32.88 Aligned_cols=71 Identities=25% Similarity=0.448 Sum_probs=51.9 Q ss_pred EEEEECCCCCCCC--EEEEECCCCEEEEEEECCCCC----------------HHHHHHHHHCCCCEEEEEEEEEECCCCC Q ss_conf 9868811148772--189977993599998054279----------------6788887423743168996576305665 Q gi|254781118|r 65 VAGRVYSSRNSGM--FMDIHDASGKIQIFTHKDTAD----------------QDSQNLLSMIDIGDIIGITGQVRRTKRG 126 (502) Q Consensus 65 i~Grv~~~R~~G~--Fi~LrD~~g~iQv~~~~~~~~----------------~~~~~~~~~l~~gd~i~v~G~v~~~~~g 126 (502) T Consensus 2 IlG~VVs~~ere~f~~y~vDDgTGcI~Cv~W~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~l~iG~llRVRG~I-~~yRg 80 (92) T cd04483 2 ILGTVVSRRERETFYSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSI-RTYRG 80 (92) T ss_pred EEEEEEEEEEECCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE-EEEEC T ss_conf 37999999760571699860898669989960457677666678445444457888761157752389994268-88704 Q ss_pred CCCCCCCEEE Q ss_conf 5342122012 Q gi|254781118|r 127 ELTVNAQKII 136 (502) Q Consensus 127 elei~~~~~~ 136 (502) T Consensus 81 ~rei~as~~~ 90 (92) T cd04483 81 EREINASVVY 90 (92) T ss_pred EEEEEEEEEE T ss_conf 4899689999

HHsearch alignment for GI: 254781118 and conserved domain: cd04483