HHsearch alignment for GI: 254781118 and conserved domain: pfam00152
>pfam00152 tRNA-synt_2 tRNA synthetases class II (D, K and N).
Probab=100.00 E-value=0 Score=666.77 Aligned_cols=332 Identities=34% Similarity=0.517 Sum_probs=282.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 44542011001234444433578899999999873855345431156532356665542036412222254321001223
Q gi|254781118|r 155 VEIRYRKRYLDIISNSDSKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPEL 234 (502)
Q Consensus 155 ~e~rl~~R~LDl~~~~~~~~~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~~g~~~~~F~~~~~~~~~~~yL~qSpql 234 (502)
T Consensus 2 ~e~r~~~R~ldlr~-~~~~~~l~~Rs~i~~~iR~ff~~~~f~EV~TP~L~~~~~e~~a~~F~~~~-~~~~~~yL~~Spel 79 (341)
T pfam00152 2 EETRLKYRYLDLRR-PKMQANLKLRSKIIRAIREFLDERGFLEVETPILTKSTPEGGARDFLVPK-FYAKEAYLPQSPQL 79 (341)
T ss_pred HHHHHCCEEEEECC-HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEECC-CCCCCEEECCCHHH
T ss_conf 22322470134148-66899999999999999999998898998798200558987776645026-78982340548899
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC
Q ss_conf 44442102430245434532025423-44324521000100110001112456789999889987088613117534113
Q gi|254781118|r 235 YLKRVLISGLTDQVFELNRNFRNEGV-SSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGTTDIPFGEKVISF 313 (502)
Q Consensus 235 ~~k~l~~~G~~drvfeI~~~FR~E~~-~~~H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~~~~~~~~~~~~~d~ 313 (502)
T Consensus 80 ~~k~ll~~g~-~rVfei~~~FR~E~~~t~rH~~EFtmlE~y~a~~d~~d~m~~~E~li~~i~~~v~~~~~~~~~~~~~~~ 158 (341)
T pfam00152 80 YKQLLMVAGF-DRVFQIAPCFRDEDLRTDRHPPEFTQLDLEMSFVDYEDVMDLTEDLIKYVFKEVKGKTEKGELLLGIEL 158 (341)
T ss_pred HHHHHHHCCC-CCCEEEECHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCC
T ss_conf 9999986588-763797232027989886550778877675535999999999999999999998634402441245547
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC----CCCHHHHHHHHHHHCC-CHHEECCEEEECCCHH
Q ss_conf 3221000000023344886215433216777656520235433----2231899988765213-0101054356558002
Q gi|254781118|r 314 KAPFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVEN----DALWGEVMMTIFEEKI-EKNIVNPTHITDFPKD 388 (502)
Q Consensus 314 ~~~f~~~~~~e~i~~~~g~~~~~~~~~e~~~~~~~~~g~~~~~----~~~~g~l~~~~~e~~i-e~~~~~p~fI~dfP~~ 388 (502)
T Consensus 159 ~~~f~rity~ea~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~p~fv~dyP~~ 237 (341)
T pfam00152 159 PEPFPRITYAEAIERYGSDKP-DLRFGLELKDVTEIKFEDAALNGGSNKLLGALRSELGERLLGDENLDNPVFVTDFPLF 237 (341)
T ss_pred CCCCEEEEHHHHHHHHCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 898447429999999719998-8688799999999844223334552448999999998887553037861999888844
Q ss_pred HHHHHCCCCC-CHHHEEECCEEECCEEEEECHHEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCEE
Q ss_conf 3453035796-721101113555578720021100579999999999998873057335450899999760869846132
Q gi|254781118|r 389 ISPFAKEVAG-EKRLVERFETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLG 467 (502)
Q Consensus 389 ~~Pf~~~~~~-~~~~~~~fdl~~~G~Ei~~G~~e~~dp~~q~~r~~~~~~~~~~~~~~~~~~~~yl~a~~yG~PPhgG~g 467 (502)
T Consensus 238 ~~pf~~~~~~~~~~~a~rFel~~~G~Ei~nG~~el~d~~~~~~rf~~~~~~---~~~~~~~d~~yl~a~~~G~PP~~G~g 314 (341)
T pfam00152 238 KRPFYMPKDEDPPGLAERFDLVLNGGEIGGGSIRIHDPEEQRKRFEELGLD---PEEAEEKFGFYLDALKYGMPPHGGIG 314 (341)
T ss_pred CCCCCCCCCCCCCCCHHEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 386668678777650121575269749825753459999999999981989---02335658999999866979970565
Q ss_pred CCHHHHHHHHCCCCCCEECCCCCCCC
Q ss_conf 46899989982628840412786757
Q gi|254781118|r 468 LGIDRLIMLLTNAPSIRDVILFPAQR 493 (502)
Q Consensus 468 lGldRL~m~l~g~~~IRdvi~FP~~k 493 (502)
T Consensus 315 lGidRL~m~l~g~~~Irdv~~FPr~~ 340 (341)
T pfam00152 315 LGLDRLVMLLTGLESIREVIAFPKTR 340 (341)
T ss_pred EHHHHHHHHHCCCCCHHHCCCCCCCC
T ss_conf 78999999980899488726789999