HHsearch alignment for GI: 254781118 and conserved domain: pfam00152

>pfam00152 tRNA-synt_2 tRNA synthetases class II (D, K and N).
Probab=100.00  E-value=0  Score=666.77  Aligned_cols=332  Identities=34%  Similarity=0.517  Sum_probs=282.6

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf             44542011001234444433578899999999873855345431156532356665542036412222254321001223
Q gi|254781118|r  155 VEIRYRKRYLDIISNSDSKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPEL  234 (502)
Q Consensus       155 ~e~rl~~R~LDl~~~~~~~~~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~~g~~~~~F~~~~~~~~~~~yL~qSpql  234 (502)
T Consensus         2 ~e~r~~~R~ldlr~-~~~~~~l~~Rs~i~~~iR~ff~~~~f~EV~TP~L~~~~~e~~a~~F~~~~-~~~~~~yL~~Spel   79 (341)
T pfam00152         2 EETRLKYRYLDLRR-PKMQANLKLRSKIIRAIREFLDERGFLEVETPILTKSTPEGGARDFLVPK-FYAKEAYLPQSPQL   79 (341)
T ss_pred             HHHHHCCEEEEECC-HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEECC-CCCCCEEECCCHHH
T ss_conf             22322470134148-66899999999999999999998898998798200558987776645026-78982340548899


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC
Q ss_conf             44442102430245434532025423-44324521000100110001112456789999889987088613117534113
Q gi|254781118|r  235 YLKRVLISGLTDQVFELNRNFRNEGV-SSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGTTDIPFGEKVISF  313 (502)
Q Consensus       235 ~~k~l~~~G~~drvfeI~~~FR~E~~-~~~H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~~~~~~~~~~~~~d~  313 (502)
T Consensus        80 ~~k~ll~~g~-~rVfei~~~FR~E~~~t~rH~~EFtmlE~y~a~~d~~d~m~~~E~li~~i~~~v~~~~~~~~~~~~~~~  158 (341)
T pfam00152        80 YKQLLMVAGF-DRVFQIAPCFRDEDLRTDRHPPEFTQLDLEMSFVDYEDVMDLTEDLIKYVFKEVKGKTEKGELLLGIEL  158 (341)
T ss_pred             HHHHHHHCCC-CCCEEEECHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCC
T ss_conf             9999986588-763797232027989886550778877675535999999999999999999998634402441245547


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC----CCCHHHHHHHHHHHCC-CHHEECCEEEECCCHH
Q ss_conf             3221000000023344886215433216777656520235433----2231899988765213-0101054356558002
Q gi|254781118|r  314 KAPFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVEN----DALWGEVMMTIFEEKI-EKNIVNPTHITDFPKD  388 (502)
Q Consensus       314 ~~~f~~~~~~e~i~~~~g~~~~~~~~~e~~~~~~~~~g~~~~~----~~~~g~l~~~~~e~~i-e~~~~~p~fI~dfP~~  388 (502)
T Consensus       159 ~~~f~rity~ea~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~p~fv~dyP~~  237 (341)
T pfam00152       159 PEPFPRITYAEAIERYGSDKP-DLRFGLELKDVTEIKFEDAALNGGSNKLLGALRSELGERLLGDENLDNPVFVTDFPLF  237 (341)
T ss_pred             CCCCEEEEHHHHHHHHCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             898447429999999719998-8688799999999844223334552448999999998887553037861999888844


Q ss_pred             HHHHHCCCCC-CHHHEEECCEEECCEEEEECHHEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCEE
Q ss_conf             3453035796-721101113555578720021100579999999999998873057335450899999760869846132
Q gi|254781118|r  389 ISPFAKEVAG-EKRLVERFETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLG  467 (502)
Q Consensus       389 ~~Pf~~~~~~-~~~~~~~fdl~~~G~Ei~~G~~e~~dp~~q~~r~~~~~~~~~~~~~~~~~~~~yl~a~~yG~PPhgG~g  467 (502)
T Consensus       238 ~~pf~~~~~~~~~~~a~rFel~~~G~Ei~nG~~el~d~~~~~~rf~~~~~~---~~~~~~~d~~yl~a~~~G~PP~~G~g  314 (341)
T pfam00152       238 KRPFYMPKDEDPPGLAERFDLVLNGGEIGGGSIRIHDPEEQRKRFEELGLD---PEEAEEKFGFYLDALKYGMPPHGGIG  314 (341)
T ss_pred             CCCCCCCCCCCCCCCHHEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             386668678777650121575269749825753459999999999981989---02335658999999866979970565


Q ss_pred             CCHHHHHHHHCCCCCCEECCCCCCCC
Q ss_conf             46899989982628840412786757
Q gi|254781118|r  468 LGIDRLIMLLTNAPSIRDVILFPAQR  493 (502)
Q Consensus       468 lGldRL~m~l~g~~~IRdvi~FP~~k  493 (502)
T Consensus       315 lGidRL~m~l~g~~~Irdv~~FPr~~  340 (341)
T pfam00152       315 LGLDRLVMLLTGLESIREVIAFPKTR  340 (341)
T ss_pred             EHHHHHHHHHCCCCCHHHCCCCCCCC
T ss_conf             78999999980899488726789999