HHsearch alignment for GI: 254781118 and conserved domain: pfam00587
>pfam00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T). Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases.
Probab=98.64 E-value=5.1e-08 Score=70.86 Aligned_cols=112 Identities=27% Similarity=0.420 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----CCC----CCCEEEEECCCCCCCCCCCHHHH-----HHHHHHHCCC-
Q ss_conf 899999999873855345431156532356----665----54203641222225432100122-----3444421024-
Q gi|254781118|r 178 QRSLLISQIRHFMEKKGFMEVETPILQPIY----GGA----TADPFKTHHNILKADMYLRIAPE-----LYLKRVLISG- 243 (502)
Q Consensus 178 ~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~----~g~----~~~~F~~~~~~~~~~~yL~qSpq-----l~~k~l~~~G- 243 (502)
T Consensus 1 l~~~l~~~~~~~~~~~G~~~i~tP~l~~~~~~~~sg~~~~~~~~my~~~-d~~~~~l~Lrp~~~~~~~~~~~~~~~-~~~ 78 (170)
T pfam00587 1 LRNALENFIRDLFKRYGYQEVDTPILEPKELWEGSGHWDDYFDEMYRFK-DRGGEELYLRPTAEVGITRLFKNEIL-SYR 78 (170)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCEEEEHHHHHHCCCCCCCHHHEEEEE-CCCCCEEEEECCCCHHHHHHHHHHCC-CCC
T ss_conf 9799999999999985998999991756789834477655753125673-58997688732574588899886200-323
Q ss_pred -CCHHHHHHHHHHCCCC-CCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -3024543453202542-344--324521000100110001112456789999
Q gi|254781118|r 244 -LTDQVFELNRNFRNEG-VSS--RHNPEFTMIEAYWAYTDYRDMMKLVEDLCH 292 (502)
Q Consensus 244 -~~drvfeI~~~FR~E~-~~~--~H~pEFt~lE~e~a~~d~~dim~l~E~li~ 292 (502)
T Consensus 79 ~lP~r~~~~~~~fR~E~~~~~Gl~R~reF~q~d~~~-~~~~e~s~~~~~e~~~ 130 (170)
T pfam00587 79 DLPLKLYQIGPCFRYEARPRRGLGRVREFTQVDAEI-FGTPEQSEEEDEELLK 130 (170)
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCEEEEEEEECEEE-EECCCHHHHHHHHHHH
T ss_conf 586013306530067777666774367889804799-9670042999999999