HHsearch alignment for GI: 254781118 and conserved domain: pfam01336
>pfam01336 tRNA_anti OB-fold nucleic acid binding domain. This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See pfam00152). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain.
Probab=98.52 E-value=5.4e-07 Score=64.26 Aligned_cols=72 Identities=36% Similarity=0.667 Sum_probs=59.7
Q ss_pred EEEEEEECCC-CCCC--CEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEEE
Q ss_conf 9998688111-4877--21899779935999980542796788887423743168996576305665534212201221
Q gi|254781118|r 63 ITVAGRVYSS-RNSG--MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRRTKRGELTVNAQKIIML 138 (502)
Q Consensus 63 V~i~Grv~~~-R~~G--~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~~~~gelei~~~~~~~l 138 (502)
T Consensus 1 v~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~~----~~~~~~~~l~~g~~v~v~G~v~~~~~~~~~i~~~~i~~~ 75 (75)
T pfam01336 1 VTVAGRVTSVRRSGGKVAFLTLRDGTGSIQVVLFKE----EAEKLAKKLKEGDVVLVTGKVKKRPGGELELVVEEIEVL 75 (75)
T ss_pred CEEEEEEEEEEECCCCEEEEEEEECCEEEEEEEEHH----HHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEC
T ss_conf 999999995188799989999997993999999523----868886328989899999999997499899999899979