HHsearch alignment for GI: 254781118 and conserved domain: pfam04076
>pfam04076 BOF Bacterial OB fold (BOF) protein. Proteins in this family form an OB-fold. Analysis of the predicted binding site of BOF family proteins implies that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localize in the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesized for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the BOF ligand-binding site may be associated with the presence of BOF proteins in mobile genetic elements and their potential role in bacterial pathogenicity.
Probab=93.33 E-value=0.44 Score=26.15 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 88599999865155556435988999868811148772189977993599998054279678888742374316899657
Q gi|254781118|r 40 DITNAEVREKYSHLQNDEKSQDMITVAGRVYSSRNSGMFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQ 119 (502)
Q Consensus 40 t~~~~e~~~~~~~l~~~~~~~~~V~i~Grv~~~R~~G~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~ 119 (502)
T Consensus 45 ~~TV~~a~~--------~~Dd~~V~L~G~Iv~~l~~d~Y~-F~D~TG~I~VeId~~-----~w~G-~~v~p~~kVrI~Ge 109 (126)
T pfam04076 45 KTTVKQAKS--------AADDAWVSLEGNIVRQIGDDEYE-FRDASGTIKVDIDDR-----VWNG-QEVQPKDKVKITGE 109 (126)
T ss_pred EEHHHHHHH--------CCCCCCEEEEEEEEEEECCCEEE-EECCCCCEEEEECHH-----HCCC-CCCCCCCEEEEEEE
T ss_conf 883998865--------87999399988999684895389-978996399996888-----8389-81799998999999
Q ss_pred EECCCCCCCCCCCCEEE
Q ss_conf 63056655342122012
Q gi|254781118|r 120 VRRTKRGELTVNAQKII 136 (502)
Q Consensus 120 v~~~~~gelei~~~~~~ 136 (502)
T Consensus 110 vDk~~-~~~eIdV~~I~ 125 (126)
T pfam04076 110 VDKDL-NKAEIDVKFIE 125 (126)
T ss_pred ECCCC-CCEEEEEEEEE
T ss_conf 94788-87179888876