RPSBLAST alignment for GI: 254781118 and conserved domain: TIGR00459
>gnl|CDD|129551 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. Length = 583
Score = 96.0 bits (239), Expect = 2e-20
Identities = 70/264 (26%), Positives = 134/264 (50%), Gaps = 33/264 (12%)
Query: 63 ITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQV 120
+T+AG V R+ G +F+D+ D SG +Q+ D D+ L + D++ + G+V
Sbjct: 18 VTLAGWVNRRRDLGGLIFIDLRDRSGIVQVV---CDPDADALKLAKGLRNEDVVQVKGKV 74
Query: 121 ---------RRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDVEIRYRKRYLDIISNSD 171
R GE+ + A+ I +L+K+ ++ E+R + RYLD+ +
Sbjct: 75 SARPEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLKYRYLDL-RRPE 133
Query: 172 SKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATAD-------PFKTHHNILKA 224
+ R + R + +R+F++++GF+E+ETP+L +T + P + H K
Sbjct: 134 MQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLT----KSTPEGARDYLVPSRVH----KG 185
Query: 225 DMY-LRIAPELYLKRVLISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDM 283
+ Y L +P+L+ K++L+ D+ +++ R FR+E + + PEFT I+ ++ D+
Sbjct: 186 EFYALPQSPQLF-KQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMTQEDV 244
Query: 284 MKLVEDLCHNLAKTLHGTT-DIPF 306
M+L+E L ++ + G PF
Sbjct: 245 MELIEKLVSHVFLEVKGIDLKKPF 268