RPSBLAST alignment for GI: 254781118 and conserved domain: TIGR00499

>gnl|CDD|129590 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. Length = 496

 Score =  542 bits (1399), Expect = e-155
 Identities = 232/493 (47%), Positives = 327/493 (66%), Gaps = 11/493 (2%)

Query: 11  SSNSIEVRSQKLNMLRKSLAEVYPAHFHRDITNAEVREKYSHLQNDE--KSQDMITVAGR 68
            ++ ++ R +KL  LR++    Y   F R  ++ E +E+Y+ L N+E       +++AGR
Sbjct: 2   LNDQLQTRREKLARLRQTGNNPYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGR 61

Query: 69  VYSSRNSGM--FMDIHDASGKIQIFTHKDTADQDSQNL-LSMIDIGDIIGITGQVRRTKR 125
           + + R+ G   F+ + D SG+IQ++ +KD   +D       ++D+GDIIG+TG   +TK 
Sbjct: 62  IMARRSMGKATFITLQDESGQIQLYVNKDDLPEDFYEFDEYLLDLGDIIGVTGYPFKTKT 121

Query: 126 GELTVNAQKIIMLSKALNSIPETYYGLSDVEIRYRKRYLDIISNSDSKIRFQQRSLLISQ 185
           GEL+V+  ++ +L+KAL  +P+ ++GL+D E RYR+RYLD+I N DS+  F  RS +I  
Sbjct: 122 GELSVHVTELQILTKALRPLPDKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVRSKIIKA 181

Query: 186 IRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELYLKRVLISGLT 245
           IR F++ +GF+EVETP+LQ I GGA A PF THHN L  D+YLRIAPELYLKR+++ G  
Sbjct: 182 IRRFLDDRGFIEVETPMLQVIPGGANARPFITHHNALDMDLYLRIAPELYLKRLIVGGF- 240

Query: 246 DQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGTTDIP 305
           ++V+E+ RNFRNEGV + HNPEFTMIE Y AY DY D+M L E+L   LA+ L GTT I 
Sbjct: 241 EKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKIT 300

Query: 306 FGEKVISFKAPFACKSMLQLVK---EATGLDFMLLKSDQEARVAAQSIGITVENDAL-WG 361
           +GE  I FK PF   +M++ +K     TG+DF  LK  + A+  A+ IGI V   +L  G
Sbjct: 301 YGELEIDFKKPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKSLTLG 360

Query: 362 EVMMTIFEEKIEKNIVNPTHITDFPKDISPFAKEVAGEKRLVERFETYCNGWEICNAFSE 421
            ++  +FE+ +E  ++ PT IT +P +ISP AK         +RFE +  G EI NAFSE
Sbjct: 361 HILNELFEQFLEHTLIQPTFITHYPAEISPLAKRNPSNPEFTDRFELFIAGKEIANAFSE 420

Query: 422 LNDPVEQRIRMEQQVEQSHQ-RGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNA 480
           LNDP++QR R EQQV +      E   +DEDF++A+ YGMPP  GLG+GIDRL+MLLT++
Sbjct: 421 LNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGMPPTGGLGIGIDRLVMLLTDS 480

Query: 481 PSIRDVILFPAQR 493
            SIRDVILFPA R
Sbjct: 481 KSIRDVILFPAMR 493