RPSBLAST alignment for GI: 254781118 and conserved domain: cd00669
>gnl|CDD|58337 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.. Length = 269
Score = 243 bits (621), Expect = 1e-64
Identities = 117/319 (36%), Positives = 171/319 (53%), Gaps = 52/319 (16%)
Query: 176 FQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELY 235
F+ RS +I IR FM+ +GF+EVETP+LQ I GGA A PF +N L D YLRI+P+L+
Sbjct: 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLF 60
Query: 236 LKRVLISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLA 295
KR+++ GL D+VFE+NRNFRNE + +RH PEFTM++ A+ DY D+++L E L +LA
Sbjct: 61 KKRLMVGGL-DRVFEINRNFRNEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLA 119
Query: 296 KTLHGTTDIPFGEKVISFKAPFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVE 355
+ + G T + +G ++ F PF +
Sbjct: 120 REVLGVTAVTYGFELEDFGLPFPRLTY--------------------------------- 146
Query: 356 NDALWGEVMMTIFEEKIEKNIVNPTHITDFPKDI-SPFAKEVAGEKRLVERFETYCNGWE 414
+ + P +TD+P ++ SP A + + F+ + NG E
Sbjct: 147 --------------REALERYGQPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGVE 192
Query: 415 ICNAFSELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLI 474
+ N S L+DP Q ++Q E+ E +L A+ YG+PP GLG+GIDRLI
Sbjct: 193 VGNGSSRLHDPDIQAEVFQEQGINKEAGMEY---FEFYLKALEYGLPPHGGLGIGIDRLI 249
Query: 475 MLLTNAPSIRDVILFPAQR 493
ML+TN+P+IR+VI FP R
Sbjct: 250 MLMTNSPTIREVIAFPKMR 268