BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (502 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 502

 Score = 1049 bits (2713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/502 (100%), Positives = 502/502 (100%)

Query: 1   MNNTLTPESLSSNSIEVRSQKLNMLRKSLAEVYPAHFHRDITNAEVREKYSHLQNDEKSQ 60
           MNNTLTPESLSSNSIEVRSQKLNMLRKSLAEVYPAHFHRDITNAEVREKYSHLQNDEKSQ
Sbjct: 1   MNNTLTPESLSSNSIEVRSQKLNMLRKSLAEVYPAHFHRDITNAEVREKYSHLQNDEKSQ 60

Query: 61  DMITVAGRVYSSRNSGMFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQV 120
           DMITVAGRVYSSRNSGMFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQV
Sbjct: 61  DMITVAGRVYSSRNSGMFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQV 120

Query: 121 RRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDVEIRYRKRYLDIISNSDSKIRFQQRS 180
           RRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDVEIRYRKRYLDIISNSDSKIRFQQRS
Sbjct: 121 RRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDVEIRYRKRYLDIISNSDSKIRFQQRS 180

Query: 181 LLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELYLKRVL 240
           LLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELYLKRVL
Sbjct: 181 LLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELYLKRVL 240

Query: 241 ISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHG 300
           ISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHG
Sbjct: 241 ISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHG 300

Query: 301 TTDIPFGEKVISFKAPFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVENDALW 360
           TTDIPFGEKVISFKAPFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVENDALW
Sbjct: 301 TTDIPFGEKVISFKAPFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVENDALW 360

Query: 361 GEVMMTIFEEKIEKNIVNPTHITDFPKDISPFAKEVAGEKRLVERFETYCNGWEICNAFS 420
           GEVMMTIFEEKIEKNIVNPTHITDFPKDISPFAKEVAGEKRLVERFETYCNGWEICNAFS
Sbjct: 361 GEVMMTIFEEKIEKNIVNPTHITDFPKDISPFAKEVAGEKRLVERFETYCNGWEICNAFS 420

Query: 421 ELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNA 480
           ELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNA
Sbjct: 421 ELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNA 480

Query: 481 PSIRDVILFPAQRVKNGSRKTE 502
           PSIRDVILFPAQRVKNGSRKTE
Sbjct: 481 PSIRDVILFPAQRVKNGSRKTE 502


>gi|254781066|ref|YP_003065479.1| putative lysyl-tRNA synthetase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 355

 Score =  144 bits (364), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 168/332 (50%), Gaps = 28/332 (8%)

Query: 178 QRSLLISQIRHFMEKKGFMEVETPILQPIYGGAT-ADPFKTH---HNILKADMYLRIAPE 233
           +R+++ S +R +  +  F+E+++  LQ   G  T    F T     + ++  +YL+ +PE
Sbjct: 24  KRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPE 83

Query: 234 LYLKRVLISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHN 293
              K++L +G  +++F     +RN      H PEFTM+E Y A+  Y  +MK   ++   
Sbjct: 84  FSCKKLLAAG-EEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRC 142

Query: 294 LAK-------TLHGTTDIPFGE-KVISFKAPFACKSMLQLVKEATGLDFMLLKSDQEAR- 344
            A+       +       PF E + I+    FA  + + L    T LD      DQ  R 
Sbjct: 143 AAEVANQKIFSFQNVNCNPFSEPEYITVAEAFARYANIDL---GTTLD----NPDQPDRH 195

Query: 345 ---VAAQSIGITVENDALWGEVMMTIFEEKIEKNI-VNPTHITD-FPKDISPFAKEVAGE 399
              + AQ  GI V +D  W ++   I  EKIE N+ +N   I D +P   S  A     +
Sbjct: 196 LLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESALANIYPAD 255

Query: 400 KRLVERFETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSHQ-RGEHTILDEDFLDAMTY 458
            R  +RFE Y    E+CNA  EL DP+EQR R E+++++  +   E   +DEDFL  +T 
Sbjct: 256 PRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLT- 314

Query: 459 GMPPASGLGLGIDRLIMLLTNAPSIRDVILFP 490
            MP +SG+ +G DRL+ML+T A +I +VI  P
Sbjct: 315 EMPQSSGIAMGFDRLVMLVTGANNINEVIWTP 346


>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 622

 Score = 56.2 bits (134), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 22/244 (9%)

Query: 62  MITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQ 119
            + ++G V+  R  G  +F+DI D  G  Q+  + D+A      +   +    ++ I G 
Sbjct: 20  FVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSA---CFEIAKSVRSEWVLCIDGL 76

Query: 120 VRRTKR---------GELTVNAQKIIMLSKALNSIPETYYGLSDV--EIRYRKRYLDIIS 168
           V              G++ ++AQKI +LS A   +P   +G  +    IR++ R+LD+  
Sbjct: 77  VMSRSAETINANIITGQIELSAQKIEILSVA-EELPLPVFGEREYPESIRFKYRFLDLRR 135

Query: 169 NSDSKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMY- 227
           ++  K    +R+ +I+ +R  M  + F+E  TPIL         D F     + +   Y 
Sbjct: 136 DTLHK-NIVKRTRIINSMRCRMIAENFIECSTPILTASSPEGARD-FLVPSRVNQGSFYA 193

Query: 228 LRIAPELYLKRVLISGLTDQVFELNRNFRNEGVSSRHNP-EFTMIEAYWAYTDYRDMMKL 286
           L  AP+ Y + ++ SG  D+ F++   FR+E   S   P EF  ++   ++ +  D++  
Sbjct: 194 LPQAPQQYKQLLMASGF-DRYFQIAPCFRDEDPRSDRLPGEFYQLDMEMSFVEQDDILNT 252

Query: 287 VEDL 290
           +E++
Sbjct: 253 MENV 256



 Score = 49.3 bits (116), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 13/91 (14%)

Query: 405 RFETYCNGWEIC-----NAFSELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYG 459
           +++  CNG+EI      N  SE+       + + ++V ++   G +         A   G
Sbjct: 481 QYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYR--------AFQCG 532

Query: 460 MPPASGLGLGIDRLIMLLTNAPSIRDVILFP 490
           MPP  G+  GIDR++MLL  A ++R+V LFP
Sbjct: 533 MPPHGGIAAGIDRIVMLLLGAKNVREVSLFP 563


>gi|254780549|ref|YP_003064962.1| signal peptide protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 271

 Score = 26.6 bits (57), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 104 LLSMIDIGDIIGITGQVRRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDVEIRY 159
           +L  I++ D++G T  VRR     L  NA+K ++ S+A    P TY    ++ + +
Sbjct: 216 VLGKINV-DVVGGTELVRRM----LRENARKAVIKSQAFRLSPSTYKSWRNITLFF 266


>gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 475

 Score = 26.6 bits (57), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 231 APELYLKRVLISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAY 274
           +PE Y+K    +G   +V+ +N+N +NE +     P +  + AY
Sbjct: 411 SPESYIKDS--TGRPVRVYNINKNSKNEFILLEMTPHYINVTAY 452


>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 416

 Score = 25.8 bits (55), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 88  IQIFTHKDTADQDSQNLLSMIDIG-DIIGITGQVRRTKRGELTVNAQKI---IMLSKALN 143
           + I  HK   D D  N+LS+++ G D   I G   R     L+V    I   I+  + + 
Sbjct: 2   VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61

Query: 144 SIPETYYGLSDVEIRY-------RKRYLDI 166
              +T Y +    I Y       RK+Y DI
Sbjct: 62  IFSKTRYKVIPTSISYGTIKIICRKKYFDI 91


>gi|254780928|ref|YP_003065341.1| histidyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 496

 Score = 25.8 bits (55), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 179 RSLLISQIRHFMEKKGFMEVETPILQ 204
           R+ ++  IR+  E  GF  +ETP+L+
Sbjct: 26  RNRILDSIRNIYENYGFDPIETPLLE 51



 Score = 24.3 bits (51), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 462 PASGLGLGIDRLIMLLTNAPS 482
           PA+G  +GI RLI+ L +  S
Sbjct: 347 PATGFSIGISRLIVALKSLES 367


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1775

 Score = 23.9 bits (50), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 155  VEIRYRKRYLDIISNSDSKIRFQQRSLLISQIRHFMEKKGFME 197
            +E+    RYLD++ + DSK+  +    ++    HF E  G+ME
Sbjct: 1614 IEVFSTMRYLDVVVDIDSKLGIR----VMRDFLHFAE-TGYME 1651


>gi|254780317|ref|YP_003064730.1| phenylalanyl-tRNA synthetase, alpha subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 366

 Score = 23.5 bits (49), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 467 GLGIDRLIMLLTNAPSIRD 485
           G+G+DR+ ML    P +R+
Sbjct: 321 GMGLDRIAMLKYGMPDVRE 339


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.134    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 310,077
Number of Sequences: 1233
Number of extensions: 12897
Number of successful extensions: 49
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 15
length of query: 502
length of database: 328,796
effective HSP length: 78
effective length of query: 424
effective length of database: 232,622
effective search space: 98631728
effective search space used: 98631728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)