BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (502 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 1049 bits (2713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/502 (100%), Positives = 502/502 (100%) Query: 1 MNNTLTPESLSSNSIEVRSQKLNMLRKSLAEVYPAHFHRDITNAEVREKYSHLQNDEKSQ 60 MNNTLTPESLSSNSIEVRSQKLNMLRKSLAEVYPAHFHRDITNAEVREKYSHLQNDEKSQ Sbjct: 1 MNNTLTPESLSSNSIEVRSQKLNMLRKSLAEVYPAHFHRDITNAEVREKYSHLQNDEKSQ 60 Query: 61 DMITVAGRVYSSRNSGMFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQV 120 DMITVAGRVYSSRNSGMFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQV Sbjct: 61 DMITVAGRVYSSRNSGMFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQV 120 Query: 121 RRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDVEIRYRKRYLDIISNSDSKIRFQQRS 180 RRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDVEIRYRKRYLDIISNSDSKIRFQQRS Sbjct: 121 RRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDVEIRYRKRYLDIISNSDSKIRFQQRS 180 Query: 181 LLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELYLKRVL 240 LLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELYLKRVL Sbjct: 181 LLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAPELYLKRVL 240 Query: 241 ISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHG 300 ISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHG Sbjct: 241 ISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHG 300 Query: 301 TTDIPFGEKVISFKAPFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVENDALW 360 TTDIPFGEKVISFKAPFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVENDALW Sbjct: 301 TTDIPFGEKVISFKAPFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVENDALW 360 Query: 361 GEVMMTIFEEKIEKNIVNPTHITDFPKDISPFAKEVAGEKRLVERFETYCNGWEICNAFS 420 GEVMMTIFEEKIEKNIVNPTHITDFPKDISPFAKEVAGEKRLVERFETYCNGWEICNAFS Sbjct: 361 GEVMMTIFEEKIEKNIVNPTHITDFPKDISPFAKEVAGEKRLVERFETYCNGWEICNAFS 420 Query: 421 ELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNA 480 ELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNA Sbjct: 421 ELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNA 480 Query: 481 PSIRDVILFPAQRVKNGSRKTE 502 PSIRDVILFPAQRVKNGSRKTE Sbjct: 481 PSIRDVILFPAQRVKNGSRKTE 502 >gi|254781066|ref|YP_003065479.1| putative lysyl-tRNA synthetase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 355 Score = 144 bits (364), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 107/332 (32%), Positives = 168/332 (50%), Gaps = 28/332 (8%) Query: 178 QRSLLISQIRHFMEKKGFMEVETPILQPIYGGAT-ADPFKTH---HNILKADMYLRIAPE 233 +R+++ S +R + + F+E+++ LQ G T F T + ++ +YL+ +PE Sbjct: 24 KRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPE 83 Query: 234 LYLKRVLISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHN 293 K++L +G +++F +RN H PEFTM+E Y A+ Y +MK ++ Sbjct: 84 FSCKKLLAAG-EEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRC 142 Query: 294 LAK-------TLHGTTDIPFGE-KVISFKAPFACKSMLQLVKEATGLDFMLLKSDQEAR- 344 A+ + PF E + I+ FA + + L T LD DQ R Sbjct: 143 AAEVANQKIFSFQNVNCNPFSEPEYITVAEAFARYANIDL---GTTLD----NPDQPDRH 195 Query: 345 ---VAAQSIGITVENDALWGEVMMTIFEEKIEKNI-VNPTHITD-FPKDISPFAKEVAGE 399 + AQ GI V +D W ++ I EKIE N+ +N I D +P S A + Sbjct: 196 LLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESALANIYPAD 255 Query: 400 KRLVERFETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSHQ-RGEHTILDEDFLDAMTY 458 R +RFE Y E+CNA EL DP+EQR R E+++++ + E +DEDFL +T Sbjct: 256 PRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLT- 314 Query: 459 GMPPASGLGLGIDRLIMLLTNAPSIRDVILFP 490 MP +SG+ +G DRL+ML+T A +I +VI P Sbjct: 315 EMPQSSGIAMGFDRLVMLVTGANNINEVIWTP 346 >gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 622 Score = 56.2 bits (134), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 22/244 (9%) Query: 62 MITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQ 119 + ++G V+ R G +F+DI D G Q+ + D+A + + ++ I G Sbjct: 20 FVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSA---CFEIAKSVRSEWVLCIDGL 76 Query: 120 VRRTKR---------GELTVNAQKIIMLSKALNSIPETYYGLSDV--EIRYRKRYLDIIS 168 V G++ ++AQKI +LS A +P +G + IR++ R+LD+ Sbjct: 77 VMSRSAETINANIITGQIELSAQKIEILSVA-EELPLPVFGEREYPESIRFKYRFLDLRR 135 Query: 169 NSDSKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMY- 227 ++ K +R+ +I+ +R M + F+E TPIL D F + + Y Sbjct: 136 DTLHK-NIVKRTRIINSMRCRMIAENFIECSTPILTASSPEGARD-FLVPSRVNQGSFYA 193 Query: 228 LRIAPELYLKRVLISGLTDQVFELNRNFRNEGVSSRHNP-EFTMIEAYWAYTDYRDMMKL 286 L AP+ Y + ++ SG D+ F++ FR+E S P EF ++ ++ + D++ Sbjct: 194 LPQAPQQYKQLLMASGF-DRYFQIAPCFRDEDPRSDRLPGEFYQLDMEMSFVEQDDILNT 252 Query: 287 VEDL 290 +E++ Sbjct: 253 MENV 256 Score = 49.3 bits (116), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 13/91 (14%) Query: 405 RFETYCNGWEIC-----NAFSELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYG 459 +++ CNG+EI N SE+ + + ++V ++ G + A G Sbjct: 481 QYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYR--------AFQCG 532 Query: 460 MPPASGLGLGIDRLIMLLTNAPSIRDVILFP 490 MPP G+ GIDR++MLL A ++R+V LFP Sbjct: 533 MPPHGGIAAGIDRIVMLLLGAKNVREVSLFP 563 >gi|254780549|ref|YP_003064962.1| signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Length = 271 Score = 26.6 bits (57), Expect = 1.0, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 104 LLSMIDIGDIIGITGQVRRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDVEIRY 159 +L I++ D++G T VRR L NA+K ++ S+A P TY ++ + + Sbjct: 216 VLGKINV-DVVGGTELVRRM----LRENARKAVIKSQAFRLSPSTYKSWRNITLFF 266 >gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter asiaticus str. psy62] Length = 475 Score = 26.6 bits (57), Expect = 1.1, Method: Compositional matrix adjust. Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 231 APELYLKRVLISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAY 274 +PE Y+K +G +V+ +N+N +NE + P + + AY Sbjct: 411 SPESYIKDS--TGRPVRVYNINKNSKNEFILLEMTPHYINVTAY 452 >gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 416 Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%) Query: 88 IQIFTHKDTADQDSQNLLSMIDIG-DIIGITGQVRRTKRGELTVNAQKI---IMLSKALN 143 + I HK D D N+LS+++ G D I G R L+V I I+ + + Sbjct: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 Query: 144 SIPETYYGLSDVEIRY-------RKRYLDI 166 +T Y + I Y RK+Y DI Sbjct: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 >gi|254780928|ref|YP_003065341.1| histidyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 496 Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 17/26 (65%) Query: 179 RSLLISQIRHFMEKKGFMEVETPILQ 204 R+ ++ IR+ E GF +ETP+L+ Sbjct: 26 RNRILDSIRNIYENYGFDPIETPLLE 51 Score = 24.3 bits (51), Expect = 5.6, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 462 PASGLGLGIDRLIMLLTNAPS 482 PA+G +GI RLI+ L + S Sbjct: 347 PATGFSIGISRLIVALKSLES 367 >gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62] Length = 1775 Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%) Query: 155 VEIRYRKRYLDIISNSDSKIRFQQRSLLISQIRHFMEKKGFME 197 +E+ RYLD++ + DSK+ + ++ HF E G+ME Sbjct: 1614 IEVFSTMRYLDVVVDIDSKLGIR----VMRDFLHFAE-TGYME 1651 >gi|254780317|ref|YP_003064730.1| phenylalanyl-tRNA synthetase, alpha subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 366 Score = 23.5 bits (49), Expect = 7.4, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 13/19 (68%) Query: 467 GLGIDRLIMLLTNAPSIRD 485 G+G+DR+ ML P +R+ Sbjct: 321 GMGLDRIAMLKYGMPDVRE 339 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.134 0.383 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 310,077 Number of Sequences: 1233 Number of extensions: 12897 Number of successful extensions: 49 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 15 length of query: 502 length of database: 328,796 effective HSP length: 78 effective length of query: 424 effective length of database: 232,622 effective search space: 98631728 effective search space used: 98631728 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)