Query gi|254781119|ref|YP_003065532.1| hypothetical protein CLIBASIA_05105 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 85
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 21:45:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781119.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1txp_A HnRNP C, heterogeneous 57.8 6.2 0.00018 20.1 2.1 21 9-29 4-24 (28)
2 >2mhr_A Myohemerythrin; oxygen 15.0 80 0.0024 13.9 1.6 72 14-85 42-117 (118)
3 >1nu7_D Alpha-thrombin, staphy 14.8 67 0.002 14.3 1.1 11 30-40 71-81 (134)
4 >1xea_A Oxidoreductase, GFO/ID 13.9 97 0.0029 13.5 2.2 22 43-65 125-146 (184)
5 >2a1d_D Staphylocoagulase; pro 13.3 79 0.0023 14.0 1.1 11 30-40 72-82 (182)
6 >2c1i_A Peptidoglycan glcnac d 13.1 36 0.0011 15.9 -0.7 13 54-66 34-46 (48)
7 >3gjx_A Exportin-1; transport, 11.1 1.2E+02 0.0035 13.0 2.2 21 64-84 59-79 (163)
8 >1xkm_A Distinctin chain A; po 11.0 1.1E+02 0.0034 13.1 1.4 12 44-55 6-17 (26)
9 >1upt_B Golgi autoantigen, gol 10.6 1.1E+02 0.0033 13.1 1.2 28 6-33 15-42 (60)
10 >1jqn_A Pepcase, PEPC, phospho 8.2 1.5E+02 0.0046 12.3 1.9 35 35-69 19-57 (171)
No 1
>>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens} (A:)
Probab=57.80 E-value=6.2 Score=20.11 Aligned_cols=21 Identities=48% Similarity=0.708 Sum_probs=17.1
Q ss_pred ECCHHHHHHHHHHHHHHHHHH
Q ss_conf 002378989899999996411
Q gi|254781119|r 9 MKGEVTLLKQKVDCLIAQFNK 29 (85)
Q Consensus 9 mkgevtllkqkvdcliaqfnk 29 (85)
.|.|.|-.|||||.|.....|
T Consensus 4 ikkeltqikqkvdsllenlek 24 (28)
T 1txp_A 4 IKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999999999999998997
No 2
>>2mhr_A Myohemerythrin; oxygen binding; 1.30A {Themiste zostericola} (A:)
Probab=15.04 E-value=80 Score=13.93 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 898989999999641146689999--99985210189999889988--7310243778999999999999974389
Q gi|254781119|r 14 TLLKQKVDCLIAQFNKQQSVIDEF--FTILTTAKGFTAFIKGFISI--ALPIGSFPALRTWIIHHVVGLLKKLFPF 85 (85)
Q Consensus 14 tllkqkvdcliaqfnkqqsvidef--ftilttakgftafikgfisi--alpigsfpalrtwiihhvvgllkklfpf 85 (85)
.++..-.++.-..|........+. .-.-.-.+.-.+|++..-.+ .+.-+-.-.+++|++.|+.+-=+++.+|
T Consensus 42 ~~l~~L~~~~~~HF~~EE~lM~~~~yp~~~~H~~~H~~fl~~l~~l~~~~~~~l~~~l~~Wl~~Hi~~~D~~~~~~ 117 (118)
T 2mhr_A 42 PNLATLVKVTTNHFTHEEAMMDAAKYSEVVPHKKMHKDFLEKIGGLSAPVDAKNVDYCKEWLVNHIKGTDFKYKGK 117 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHHHHHTGGGGTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999819997799999999999999999999998889999999999818887857757
No 3
>>1nu7_D Alpha-thrombin, staphylocoagulase; thrombin non-proteolytic activator, hydrolase/protein binding complex; HET: DPN ARM; 2.20A {Staphylococcus aureus} (D:149-282)
Probab=14.84 E-value=67 Score=14.33 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=7.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 46689999999
Q gi|254781119|r 30 QQSVIDEFFTI 40 (85)
Q Consensus 30 qqsvideffti 40 (85)
-.|.||+||--
T Consensus 71 LesIIDdFF~e 81 (134)
T 1nu7_D 71 LESIIEDFFIE 81 (134)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 98899999987
No 4
>>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} (A:1-123,A:263-323)
Probab=13.89 E-value=97 Score=13.46 Aligned_cols=22 Identities=32% Similarity=0.788 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 21018999988998873102437
Q gi|254781119|r 43 TAKGFTAFIKGFISIALPIGSFP 65 (85)
Q Consensus 43 takgftafikgfisialpigsfp 65 (85)
|.|||++.|..+++..- -|..+
T Consensus 125 ~~~~~~~~~~~~~~~~~-~~~~~ 146 (184)
T 1xea_A 125 ASKGFDAXVQDWLQVAA-AGKLP 146 (184)
T ss_dssp HHTTHHHHHHHHHHHHH-HTCCC
T ss_pred CCHHHHHHHHHHHHHHH-CCCCC
T ss_conf 02579999999999997-79979
No 5
>>2a1d_D Staphylocoagulase; prothrombin activator, protein-protein complex, hydrolase; HET: DPN ARM NDG; 3.50A {Staphylococcus aureus} (D:148-329)
Probab=13.34 E-value=79 Score=13.96 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=8.1
Q ss_pred HHHHHHHHHHH
Q ss_conf 46689999999
Q gi|254781119|r 30 QQSVIDEFFTI 40 (85)
Q Consensus 30 qqsvideffti 40 (85)
-.|.||+||--
T Consensus 72 LesIIDdFF~e 82 (182)
T 2a1d_D 72 LESIIEDFFIE 82 (182)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999987
No 6
>>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} (A:166-213)
Probab=13.11 E-value=36 Score=15.87 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=9.2
Q ss_pred HHHHHHHCCCCHH
Q ss_conf 9988731024377
Q gi|254781119|r 54 FISIALPIGSFPA 66 (85)
Q Consensus 54 fisialpigsfpa 66 (85)
.-.|||||.||-.
T Consensus 34 leeialpvssffd 46 (48)
T 2c1i_A 34 LEEIALPVSAFFD 46 (48)
T ss_dssp --CEEEEGGGGGG
T ss_pred CEEEEECHHHHHH
T ss_conf 5047720788665
No 7
>>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3gb8_A (A:911-1073)
Probab=11.05 E-value=1.2e+02 Score=12.95 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHHHHHHCC
Q ss_conf 377899999999999997438
Q gi|254781119|r 64 FPALRTWIIHHVVGLLKKLFP 84 (85)
Q Consensus 64 fpalrtwiihhvvgllkklfp 84 (85)
.+.-+..+..+++.||+.-||
T Consensus 59 ~~sN~~~i~~yl~~lL~~aFp 79 (163)
T 3gjx_A 59 PVNNQMFIQDYVANLLKSAFP 79 (163)
T ss_dssp TTCHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHHHCC
T ss_conf 211799999999999987189
No 8
>>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} (A:)
Probab=11.00 E-value=1.1e+02 Score=13.05 Aligned_cols=12 Identities=50% Similarity=0.719 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHH
Q ss_conf 101899998899
Q gi|254781119|r 44 AKGFTAFIKGFI 55 (85)
Q Consensus 44 akgftafikgfi 55 (85)
..||||.||..-
T Consensus 6 ppgftaliktlr 17 (26)
T 1xkm_A 6 PPGFTALIKTLR 17 (26)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH
T ss_conf 976899999987
No 9
>>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} (B:)
Probab=10.56 E-value=1.1e+02 Score=13.08 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=22.4
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5530023789898999999964114668
Q gi|254781119|r 6 FVEMKGEVTLLKQKVDCLIAQFNKQQSV 33 (85)
Q Consensus 6 fvemkgevtllkqkvdcliaqfnkqqsv 33 (85)
|--|-|..+.---||-+-+++|+.+|.-
T Consensus 15 feYM~GkEt~tlaKVi~av~kF~~~Q~q 42 (60)
T 1upt_B 15 FEYXXGRETKTXAKVITTVLKFPDDQTQ 42 (60)
T ss_dssp HHHHTTSSHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 9997175146899999999918999999
No 10
>>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} (A:648-818)
Probab=8.22 E-value=1.5e+02 Score=12.32 Aligned_cols=35 Identities=29% Similarity=0.486 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHCCCCHHHHH
Q ss_conf 999999852101899998899887----31024377899
Q gi|254781119|r 35 DEFFTILTTAKGFTAFIKGFISIA----LPIGSFPALRT 69 (85)
Q Consensus 35 defftilttakgftafikgfisia----lpigsfpalrt 69 (85)
..+-..+....||..|..-.-.|. |+|||=||-|.
T Consensus 19 ~~Yr~lv~~~p~F~~yF~~aTPi~ei~~LnIGSRPakR~ 57 (171)
T 1jqn_A 19 DVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRR 57 (171)
T ss_dssp HHHHHHHTTCTTHHHHHHHHSCHHHHHHSSCSSCC----
T ss_pred HHHHHHHCCCCCHHHHHHHCCHHHHHHHCCCCCCCCCCC
T ss_conf 999986006960334476606887752078788865578
Done!