Query gi|254781119|ref|YP_003065532.1| hypothetical protein CLIBASIA_05105 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 85 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed Jun 1 01:33:37 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781119.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1txp_A HnRNP C, heterogeneous 60.6 3.7 0.00015 20.5 2.1 21 9-29 4-24 (28) 2 2kvs_A Uncharacterized protein 16.5 19 0.00081 16.5 -0.5 23 46-71 7-29 (80) 3 1xkm_A Distinctin chain A; por 11.0 80 0.0034 13.0 1.4 12 44-55 6-17 (26) 4 1upt_B Golgi autoantigen, golg 9.4 94 0.0039 12.7 1.2 28 6-33 15-42 (60) 5 1l8y_A Upstream binding factor 8.5 1.1E+02 0.0044 12.4 1.4 14 28-41 14-27 (91) 6 3bz1_E Cytochrome B559 subunit 7.9 1.1E+02 0.0047 12.2 1.5 10 66-75 16-25 (84) 7 2hmq_A Hemerythrin; oxygen tra 6.5 1.3E+02 0.0055 11.9 1.9 20 62-81 89-108 (113) 8 2avr_X Adhesion A; antiparalle 6.4 1.3E+02 0.0056 11.8 3.0 33 9-41 73-105 (119) 9 2avk_A Hemerythrin-like domain 6.3 73 0.0031 13.3 -0.5 19 64-82 108-126 (136) 10 2vog_B BCL-2-modifying factor; 5.8 1.4E+02 0.0061 11.6 2.0 14 16-29 9-22 (27) No 1 >1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens} Probab=60.59 E-value=3.7 Score=20.53 Aligned_cols=21 Identities=48% Similarity=0.708 Sum_probs=17.4 Q ss_pred ECCHHHHHHHHHHHHHHHHHH Q ss_conf 002378989899999996411 Q gi|254781119|r 9 MKGEVTLLKQKVDCLIAQFNK 29 (85) Q Consensus 9 mkgevtllkqkvdcliaqfnk 29 (85) .|.|.|-.|||||.|.....| T Consensus 4 ik~eltqikqkvdsllenlek 24 (28) T 1txp_A 4 IKKELTQIKQKVDSLLENLEK 24 (28) T ss_dssp HHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 899999999999999998987 No 2 >2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus} Probab=16.52 E-value=19 Score=16.53 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=13.7 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 18999988998873102437789999 Q gi|254781119|r 46 GFTAFIKGFISIALPIGSFPALRTWI 71 (85) Q Consensus 46 gftafikgfisialpigsfpalrtwi 71 (85) .|-.||.||+...-|+|+ |..|| T Consensus 7 SFYdFiq~F~~DdTPLGe---LA~wI 29 (80) T 2kvs_A 7 TFYNFIMGFQNDNTPFGI---LAEHV 29 (80) T ss_dssp HHHHHHTTTTTSSCHHHH---HHHHH T ss_pred CHHHHHHHCCCCCCCHHH---HHHHH T ss_conf 099999855578996689---99998 No 3 >1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6 Probab=10.98 E-value=80 Score=13.05 Aligned_cols=12 Identities=50% Similarity=0.719 Sum_probs=8.4 Q ss_pred HHHHHHHHHHHH Q ss_conf 101899998899 Q gi|254781119|r 44 AKGFTAFIKGFI 55 (85) Q Consensus 44 akgftafikgfi 55 (85) ..||||.||..- T Consensus 6 ppgftaliktlr 17 (26) T 1xkm_A 6 PPGFTALIKTLR 17 (26) T ss_dssp CHHHHHHHHHHH T ss_pred CCCHHHHHHHHH T ss_conf 976899999987 No 4 >1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E* Probab=9.36 E-value=94 Score=12.68 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=21.7 Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5530023789898999999964114668 Q gi|254781119|r 6 FVEMKGEVTLLKQKVDCLIAQFNKQQSV 33 (85) Q Consensus 6 fvemkgevtllkqkvdcliaqfnkqqsv 33 (85) |--|-|..+.---||-+-+++|+.+|.- T Consensus 15 feYMmG~Et~tlaKVi~av~kF~~~Q~q 42 (60) T 1upt_B 15 FEYMMGRETKTMAKVITTVLKFPDDQTQ 42 (60) T ss_dssp HHHHTTSSHHHHHHHHHHHTTCCHHHHH T ss_pred HHHHCCCCHHHHHHHHHHHHHCCHHHHH T ss_conf 9997075157899999999908999999 No 5 >1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A Probab=8.52 E-value=1.1e+02 Score=12.40 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=9.4 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 11466899999998 Q gi|254781119|r 28 NKQQSVIDEFFTIL 41 (85) Q Consensus 28 nkqqsvidefftil 41 (85) -=|||||.++..-. T Consensus 14 iWqqSvigdYlak~ 27 (91) T 1l8y_A 14 IWQQSVIGDYLARF 27 (91) T ss_dssp HHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999998 No 6 >3bz1_E Cytochrome B559 subunit alpha; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3kzi_E* 1izl_E* 3a0b_E* 3a0h_E* Probab=7.91 E-value=1.1e+02 Score=12.24 Aligned_cols=10 Identities=40% Similarity=1.195 Sum_probs=6.5 Q ss_pred HHHHHHHHHH Q ss_conf 7899999999 Q gi|254781119|r 66 ALRTWIIHHV 75 (85) Q Consensus 66 alrtwiihhv 75 (85) ..|-|+||-+ T Consensus 16 siRYWvIHsI 25 (84) T 3bz1_E 16 SVRYWVIHSI 25 (84) T ss_dssp CHHHHHHHHH T ss_pred EEEEEEEEEE T ss_conf 0446888763 No 7 >2hmq_A Hemerythrin; oxygen transport; 1.66A {Themiste dyscritum} SCOP: a.24.4.1 PDB: 2hmz_A 1hmd_A 1hmo_A 1i4y_A 1i4z_A 1hrb_A Probab=6.53 E-value=1.3e+02 Score=11.85 Aligned_cols=20 Identities=20% Similarity=0.557 Sum_probs=14.5 Q ss_pred CCCHHHHHHHHHHHHHHHHH Q ss_conf 24377899999999999997 Q gi|254781119|r 62 GSFPALRTWIIHHVVGLLKK 81 (85) Q Consensus 62 gsfpalrtwiihhvvgllkk 81 (85) ...-.|++|++.|+..-=++ T Consensus 89 ~~~~~l~~Wl~~HI~~~D~~ 108 (113) T 2hmq_A 89 GDVTYAKNWLVNHIKTIDFK 108 (113) T ss_dssp CCHHHHHHHHHHHHHHTTGG T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999997988787 No 8 >2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A Probab=6.41 E-value=1.3e+02 Score=11.81 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=18.1 Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 002378989899999996411466899999998 Q gi|254781119|r 9 MKGEVTLLKQKVDCLIAQFNKQQSVIDEFFTIL 41 (85) Q Consensus 9 mkgevtllkqkvdcliaqfnkqqsvidefftil 41 (85) |++-|.-++.-..-|-.....|+.+||.|=-|- T Consensus 73 y~~lvkqY~~~~keLd~~ik~qekiId~FE~ik 105 (119) T 2avr_X 73 YQELASKYEDALKKLEAEMEQQKAVISDFEKIQ 105 (119) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999899999999999 No 9 >2avk_A Hemerythrin-like domain protein DCRH; hemerythrin-like oxygen sensor, oxygen storage/transport complex; 1.53A {Desulfovibrio vulgaris} PDB: 2awy_A 2awc_A Probab=6.32 E-value=73 Score=13.28 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=13.0 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 3778999999999999974 Q gi|254781119|r 64 FPALRTWIIHHVVGLLKKL 82 (85) Q Consensus 64 fpalrtwiihhvvgllkkl 82 (85) +..+++|++.|+..-=+++ T Consensus 108 ~~~l~~Wl~~HI~~~D~~~ 126 (136) T 2avk_A 108 LRGLVDWLVNHIMKEDKKY 126 (136) T ss_dssp HHHHHHHHHHHHHTTGGGG T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999949973999 No 10 >2vog_B BCL-2-modifying factor; protein-protein complex, BH3, cytoplasm, apoptosis, Pro-surviVal; 1.9A {Mus musculus} Probab=5.83 E-value=1.4e+02 Score=11.62 Aligned_cols=14 Identities=29% Similarity=0.871 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 89899999996411 Q gi|254781119|r 16 LKQKVDCLIAQFNK 29 (85) Q Consensus 16 lkqkvdcliaqfnk 29 (85) ..||..|.-.||.. T Consensus 9 ia~klqciadqfhr 22 (27) T 2vog_B 9 IARKLQCIADQFHR 22 (27) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 Done!