BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781119|ref|YP_003065532.1| hypothetical protein
CLIBASIA_05105 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781119|ref|YP_003065532.1| hypothetical protein CLIBASIA_05105 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040796|gb|ACT57592.1| hypothetical protein CLIBASIA_05105 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 85

 Score =  171 bits (434), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 1  MTRVEFVEMKGEVTLLKQKVDCLIAQFNKQQSVIDEFFTILTTAKGFTAFIKGFISIALP 60
          MTRVEFVEMKGEVTLLKQKVDCLIAQFNKQQSVIDEFFTILTTAKGFTAFIKGFISIALP
Sbjct: 1  MTRVEFVEMKGEVTLLKQKVDCLIAQFNKQQSVIDEFFTILTTAKGFTAFIKGFISIALP 60

Query: 61 IGSFPALRTWIIHHVVGLLKKLFPF 85
          IGSFPALRTWIIHHVVGLLKKLFPF
Sbjct: 61 IGSFPALRTWIIHHVVGLLKKLFPF 85


>gi|315122887|ref|YP_004063376.1| hypothetical protein CKC_05715 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313496289|gb|ADR52888.1| hypothetical protein CKC_05715 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 85

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 11/80 (13%)

Query: 3  RVEFVEMKGEVTLLKQKVDCLIAQ-------FNKQQSVIDEFFTILTTAKGFTAFIK--G 53
          R E    K E   L  KVDCLI         +N+QQ+ I     IL T+KG  +FIK  G
Sbjct: 4  RQEQYVTKQEFNELNAKVDCLITHCKVFERHYNEQQNDIKSILQILNTSKGLASFIKTSG 63

Query: 54 FISIALP--IGSFPALRTWI 71
           I+ +L   I +   L+ W+
Sbjct: 64 AITASLSAIIYALYNLKAWL 83


Searching..................................................done


Results from round 2





CONVERGED!
>gi|254781119|ref|YP_003065532.1| hypothetical protein CLIBASIA_05105 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040796|gb|ACT57592.1| hypothetical protein CLIBASIA_05105 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 85

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 1  MTRVEFVEMKGEVTLLKQKVDCLIAQFNKQQSVIDEFFTILTTAKGFTAFIKGFISIALP 60
          MTRVEFVEMKGEVTLLKQKVDCLIAQFNKQQSVIDEFFTILTTAKGFTAFIKGFISIALP
Sbjct: 1  MTRVEFVEMKGEVTLLKQKVDCLIAQFNKQQSVIDEFFTILTTAKGFTAFIKGFISIALP 60

Query: 61 IGSFPALRTWIIHHVVGLLKKLFPF 85
          IGSFPALRTWIIHHVVGLLKKLFPF
Sbjct: 61 IGSFPALRTWIIHHVVGLLKKLFPF 85


>gi|315122887|ref|YP_004063376.1| hypothetical protein CKC_05715 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313496289|gb|ADR52888.1| hypothetical protein CKC_05715 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 85

 Score = 38.0 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 11/80 (13%)

Query: 3  RVEFVEMKGEVTLLKQKVDCLIAQ-------FNKQQSVIDEFFTILTTAKGFTAFIK--G 53
          R E    K E   L  KVDCLI         +N+QQ+ I     IL T+KG  +FIK  G
Sbjct: 4  RQEQYVTKQEFNELNAKVDCLITHCKVFERHYNEQQNDIKSILQILNTSKGLASFIKTSG 63

Query: 54 FISIALP--IGSFPALRTWI 71
           I+ +L   I +   L+ W+
Sbjct: 64 AITASLSAIIYALYNLKAWL 83


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.331    0.144    0.430 

Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,750,846,584
Number of Sequences: 14124377
Number of extensions: 66356410
Number of successful extensions: 195884
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 195869
Number of HSP's gapped (non-prelim): 19
length of query: 85
length of database: 4,842,793,630
effective HSP length: 55
effective length of query: 30
effective length of database: 4,065,952,895
effective search space: 121978586850
effective search space used: 121978586850
T: 11
A: 40
X1: 16 ( 7.6 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 76 (33.7 bits)