RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781119|ref|YP_003065532.1| hypothetical protein CLIBASIA_05105 [Candidatus Liberibacter asiaticus str. psy62] (85 letters) >gnl|CDD|181971 PRK09586, murP, PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed. Length = 476 Score = 26.9 bits (60), Expect = 1.3 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%) Query: 29 KQQSVIDEFFTILTTAKGFTAFIKGFISIALPIG 62 KQ S + +F T FT I GFI+ L +G Sbjct: 107 KQTSGVQQFLAKFATI--FTPLIPGFIAAGLLLG 138 >gnl|CDD|180718 PRK06834, PRK06834, hypothetical protein; Provisional. Length = 488 Score = 25.7 bits (57), Expect = 2.4 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 5/36 (13%) Query: 30 QQSVIDEFFTILTTAKGFTAFIKGFISIALPIGSFP 65 Q+ + D F A+G A + GF + L I FP Sbjct: 58 QRGIADRF-----LAQGQVAQVTGFAATRLDISDFP 88 >gnl|CDD|183391 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed. Length = 1228 Score = 26.0 bits (58), Expect = 2.4 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 4/17 (23%) Query: 25 AQF----NKQQSVIDEF 37 AQF N Q++IDEF Sbjct: 980 AQFGDFANGAQTIIDEF 996 >gnl|CDD|151614 pfam11172, DUF2959, Protein of unknown function (DUF2959). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria. Length = 201 Score = 25.3 bits (56), Expect = 3.9 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%) Query: 9 MKGEVTLLKQKVDCLIAQFNKQQSVIDE 36 ++GE+ L+ V LI K I E Sbjct: 168 LQGELRSLQSDVSSLIKDMEKA---IAE 192 >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional. Length = 562 Score = 25.2 bits (55), Expect = 4.1 Identities = 8/20 (40%), Positives = 14/20 (70%) Query: 65 PALRTWIIHHVVGLLKKLFP 84 PA + W+++ VV +KK+ P Sbjct: 158 PAAKGWLVNTVVDKVKKMVP 177 >gnl|CDD|182850 PRK10935, PRK10935, nitrate/nitrite sensor protein NarQ; Provisional. Length = 565 Score = 24.8 bits (55), Expect = 5.5 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%) Query: 13 VTLLKQKVDCLIAQFNKQQSVIDEFFTILTTA 44 +TLLK+ +D A+ QS+I EF L+ A Sbjct: 386 LTLLKRSLDEDNAK---AQSIIAEFDQALSDA 414 >gnl|CDD|178991 PRK00373, PRK00373, V-type ATP synthase subunit D; Reviewed. Length = 204 Score = 24.4 bits (54), Expect = 6.8 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 17/52 (32%) Query: 2 TRVEFVEMKGEVT-------LLKQKVDCLIAQFNKQQSVIDEFFTILTTAKG 46 TR+E + +K + LLK K D LI EFF IL AK Sbjct: 9 TRMELINLKRRLKLAERGHKLLKDKRDELIM----------EFFDILDEAKK 50 >gnl|CDD|182715 PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional. Length = 413 Score = 24.3 bits (53), Expect = 7.4 Identities = 10/30 (33%), Positives = 15/30 (50%) Query: 8 EMKGEVTLLKQKVDCLIAQFNKQQSVIDEF 37 E++ +T+L Q+VD L Q Q E Sbjct: 127 EVRRRITILPQEVDSLAKQIGNQNDASTEL 156 >gnl|CDD|161842 TIGR00366, TIGR00366, conserved hypothetical integral membrane protein. Length = 438 Score = 24.0 bits (52), Expect = 8.1 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%) Query: 32 SVIDEFFTILTTAKGF---TAFIKGFISIALPIG 62 ++I EFF + F T F G I+I +P G Sbjct: 337 TLITEFFINVANKDTFPLMTFFSAGLINIFIPSG 370 >gnl|CDD|181647 PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed. Length = 376 Score = 23.8 bits (52), Expect = 9.5 Identities = 8/13 (61%), Positives = 9/13 (69%) Query: 59 LPIGSFPALRTWI 71 LP+ S P L TWI Sbjct: 97 LPLVSIPELETWI 109 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.331 0.144 0.430 Gapped Lambda K H 0.267 0.0691 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 1,374,284 Number of extensions: 71673 Number of successful extensions: 184 Number of sequences better than 10.0: 1 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 21 Length of query: 85 Length of database: 5,994,473 Length adjustment: 54 Effective length of query: 31 Effective length of database: 4,827,641 Effective search space: 149656871 Effective search space used: 149656871 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 50 (23.1 bits)