RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781119|ref|YP_003065532.1| hypothetical protein
CLIBASIA_05105 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)



>gnl|CDD|181971 PRK09586, murP, PTS system N-acetylmuramic acid transporter
           subunits EIIBC; Reviewed.
          Length = 476

 Score = 26.9 bits (60), Expect = 1.3
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 29  KQQSVIDEFFTILTTAKGFTAFIKGFISIALPIG 62
           KQ S + +F     T   FT  I GFI+  L +G
Sbjct: 107 KQTSGVQQFLAKFATI--FTPLIPGFIAAGLLLG 138


>gnl|CDD|180718 PRK06834, PRK06834, hypothetical protein; Provisional.
          Length = 488

 Score = 25.7 bits (57), Expect = 2.4
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 5/36 (13%)

Query: 30 QQSVIDEFFTILTTAKGFTAFIKGFISIALPIGSFP 65
          Q+ + D F      A+G  A + GF +  L I  FP
Sbjct: 58 QRGIADRF-----LAQGQVAQVTGFAATRLDISDFP 88


>gnl|CDD|183391 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
          Length = 1228

 Score = 26.0 bits (58), Expect = 2.4
 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 4/17 (23%)

Query: 25  AQF----NKQQSVIDEF 37
           AQF    N  Q++IDEF
Sbjct: 980 AQFGDFANGAQTIIDEF 996


>gnl|CDD|151614 pfam11172, DUF2959, Protein of unknown function (DUF2959).  This
           family of proteins with unknown function appears to be
           restricted to Gammaproteobacteria.
          Length = 201

 Score = 25.3 bits (56), Expect = 3.9
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)

Query: 9   MKGEVTLLKQKVDCLIAQFNKQQSVIDE 36
           ++GE+  L+  V  LI    K    I E
Sbjct: 168 LQGELRSLQSDVSSLIKDMEKA---IAE 192


>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
          Length = 562

 Score = 25.2 bits (55), Expect = 4.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 65  PALRTWIIHHVVGLLKKLFP 84
           PA + W+++ VV  +KK+ P
Sbjct: 158 PAAKGWLVNTVVDKVKKMVP 177


>gnl|CDD|182850 PRK10935, PRK10935, nitrate/nitrite sensor protein NarQ;
           Provisional.
          Length = 565

 Score = 24.8 bits (55), Expect = 5.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 13  VTLLKQKVDCLIAQFNKQQSVIDEFFTILTTA 44
           +TLLK+ +D   A+    QS+I EF   L+ A
Sbjct: 386 LTLLKRSLDEDNAK---AQSIIAEFDQALSDA 414


>gnl|CDD|178991 PRK00373, PRK00373, V-type ATP synthase subunit D; Reviewed.
          Length = 204

 Score = 24.4 bits (54), Expect = 6.8
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 17/52 (32%)

Query: 2  TRVEFVEMKGEVT-------LLKQKVDCLIAQFNKQQSVIDEFFTILTTAKG 46
          TR+E + +K  +        LLK K D LI           EFF IL  AK 
Sbjct: 9  TRMELINLKRRLKLAERGHKLLKDKRDELIM----------EFFDILDEAKK 50


>gnl|CDD|182715 PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA;
           Provisional.
          Length = 413

 Score = 24.3 bits (53), Expect = 7.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 8   EMKGEVTLLKQKVDCLIAQFNKQQSVIDEF 37
           E++  +T+L Q+VD L  Q   Q     E 
Sbjct: 127 EVRRRITILPQEVDSLAKQIGNQNDASTEL 156


>gnl|CDD|161842 TIGR00366, TIGR00366, conserved hypothetical integral membrane
           protein. 
          Length = 438

 Score = 24.0 bits (52), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 32  SVIDEFFTILTTAKGF---TAFIKGFISIALPIG 62
           ++I EFF  +     F   T F  G I+I +P G
Sbjct: 337 TLITEFFINVANKDTFPLMTFFSAGLINIFIPSG 370


>gnl|CDD|181647 PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta;
           Reviewed.
          Length = 376

 Score = 23.8 bits (52), Expect = 9.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 59  LPIGSFPALRTWI 71
           LP+ S P L TWI
Sbjct: 97  LPLVSIPELETWI 109


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.331    0.144    0.430 

Gapped
Lambda     K      H
   0.267   0.0691    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,374,284
Number of extensions: 71673
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 21
Length of query: 85
Length of database: 5,994,473
Length adjustment: 54
Effective length of query: 31
Effective length of database: 4,827,641
Effective search space: 149656871
Effective search space used: 149656871
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.1 bits)