RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781119|ref|YP_003065532.1| hypothetical protein
CLIBASIA_05105 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)



>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein,
           stationary phase, phosphatase, mononucleotidase,
           divalent metal ION; 1.7A {Salmonella typhimurium} PDB:
           2v4o_A (A:1-233)
          Length = 233

 Score = 26.8 bits (59), Expect = 1.1
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 15  LLKQKVDCLIAQFNKQQSVIDEFFTILTTAKGFTAFIKGFISIALPIGSFPALRTWIIHH 74
           L++ + D +++  N   ++ D+     T A        GF ++A+ +  +    T     
Sbjct: 80  LMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDT-AAAV 138

Query: 75  VVGLLKKLF 83
              LL+ L 
Sbjct: 139 TCALLRGLS 147


>1ccw_B Protein (glutamate mutase); coenzyme B12, radical reaction,
           TIM- barrel, rossman-fold; HET: TAR CNC; 1.60A
           {Clostridium cochlearium} (B:1-409)
          Length = 409

 Score = 24.3 bits (53), Expect = 5.4
 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)

Query: 42  TTAKGFTAFIKGFISIALPIG-SFP---ALRTW 70
             A G+T+   G IS  +P   +     +L  W
Sbjct: 162 IHAGGWTSNEGGGISYNVPYAKNVTIEKSLLDW 194


>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH,
          oxidoreductase; 1.75A {Corynebacterium glutamicum}
          (A:179-227,A:416-459)
          Length = 93

 Score = 23.8 bits (52), Expect = 9.2
 Identities = 4/18 (22%), Positives = 10/18 (55%)

Query: 3  RVEFVEMKGEVTLLKQKV 20
          +++ +   G  T+LK  +
Sbjct: 17 QIKHIAADGTETILKDSL 34


>1itw_A Isocitrate dehydrogenase; greece KEY motif,
          oxidoreductase; HET: ICT; 1.95A {Azotobacter
          vinelandii} (A:181-229,A:421-463)
          Length = 92

 Score = 23.8 bits (52), Expect = 9.5
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 3  RVEFVEMKGEVTLLKQKV 20
          ++E +   G  T+LK K 
Sbjct: 17 KIELIAKDGSSTVLKAKT 34


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.331    0.144    0.430 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 628,732
Number of extensions: 21582
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 6
Length of query: 85
Length of database: 4,956,049
Length adjustment: 48
Effective length of query: 37
Effective length of database: 3,333,409
Effective search space: 123336133
Effective search space used: 123336133
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.3 bits)