RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781119|ref|YP_003065532.1| hypothetical protein
CLIBASIA_05105 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)



>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 221

 Score = 24.0 bits (51), Expect = 3.7
 Identities = 10/76 (13%), Positives = 24/76 (31%)

Query: 10  KGEVTLLKQKVDCLIAQFNKQQSVIDEFFTILTTAKGFTAFIKGFISIALPIGSFPALRT 69
           +  + +  +    L  +     ++I+ F   +  +   T     F    L    +  +R 
Sbjct: 30  RDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRR 89

Query: 70  WIIHHVVGLLKKLFPF 85
           W+      + K    F
Sbjct: 90  WMKRKKTQIDKLDKIF 105


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.144    0.430 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 312,238
Number of extensions: 11238
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 2
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.2 bits)