HHsearch alignment for GI: 254781120 and conserved domain: COG1533
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair].
Probab=97.36 E-value=0.0079 Score=42.01 Aligned_cols=175 Identities=18% Similarity=0.301 Sum_probs=105.6
Q ss_pred EEEECCCCHHCCCCCCCCCCHHHC-----CCCHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCH
Q ss_conf 988406510048613224411102-----789899-99999999997222034444343444545861101441014544
Q gi|254781120|r 117 CVSSQVGCSLTCSFCYTGTQKLVR-----NLTAEE-ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 (384)
Q Consensus 117 CvSSQvGC~m~C~FCaTg~~G~~R-----NLt~~E-Iv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEP 190 (384)
T Consensus 32 ~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l---~~el~~--------------~~~k~~~i~is~~TDp 94 (297)
T COG1533 32 TLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELL---ERELRK--------------PGPKRTVIAISSVTDP 94 (297)
T ss_pred ECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHH---HHHHHH--------------CCCCCEEEEEECCCCC
T ss_conf 33774787788841336201466567860554015699999---988752--------------4678559998546888
Q ss_pred HHH----HHHHHHHHHCCCCCCCCCCCCCEEEEEECCC-C-HHHHHHH---CCCCCCEEEEEECCCCHHHHHHCCCCCCC
Q ss_conf 542----8999999603768457787753688851387-4-1478860---12565179984045511344412331257
Q gi|254781120|r 191 LCN----FDNVKKSLSIASDSMGLSFSKRRITLSTSGF-V-PNIARVG---EEIGVMLAISLHAVSNDLRNILVPINRKY 261 (384)
Q Consensus 191 l~N----~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi-~-p~I~~la---~~~~~~LAiSLha~~~~~R~~lmPi~~~~ 261 (384)
T Consensus 95 yqp~E~~~~ltR~ilei~~-~~~~~-----v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~ap-- 166 (297)
T COG1533 95 YQPIEKEYRLTRKILEILL-KYGFP-----VSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAP-- 166 (297)
T ss_pred CCCHHHHHHHHHHHHHHHH-HCCCC-----EEEEECCCCHHCCHHHHHHHCCCCCEEEEEEEECCCHHHHHHCCCCCC--
T ss_conf 8564778789999999988-53996-----799977741010278998401126518999951684888986589996--
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEE-EEEECCCCCCHHHHHHHHHHHCCCC---CEEEEEECCC
Q ss_conf 899999999999862589459999-9872699988899999999832545---3166751277
Q gi|254781120|r 262 PLEMLIDACRHYPGLSNARRITFE-YVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNP 320 (384)
Q Consensus 262 ~l~~l~~a~~~y~~~~~~rrit~E-Yvli~gvNDs~e~a~~L~~ll~~~~---~~vNLIp~N~ 320 (384)
T Consensus 167 sp~~Ri~al~~l~e-a-Gi~~~v~v~PIiP~~~d--~e~e~~l~~~~~ag~~~v~~~~l~~~~ 225 (297)
T COG1533 167 SPEERLEALKELSE-A-GIPVGLFVAPIIPGLND--EELERILEAAAEAGARVVVYGTLRLRL 225 (297)
T ss_pred CHHHHHHHHHHHHH-C-CCEEEEEEECCCCCCCH--HHHHHHHHHHHHCCCCEEEEEEEECCH
T ss_conf 98999999999998-7-98489998553078875--889999999997577413631330457