HHsearch alignment for GI: 254781120 and conserved domain: PRK07360
>PRK07360 FO synthase subunit 2; Reviewed.
Probab=96.96 E-value=0.0077 Score=42.09 Aligned_cols=180 Identities=18% Similarity=0.232 Sum_probs=92.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCHHCCCCCCCCCCH---HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 54430234677338988406510048613224411---102789899999999999972220344443434445458611
Q gi|254781120|r 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK---LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 (384)
Q Consensus 103 IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~~G---~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i 179 (384)
T Consensus 59 v~n~~In~TN---i-------C~~~C~fCaF~r~p~~~~ay~ls~eEi~~~~~~a~~~--------------------G~ 108 (375)
T PRK07360 59 VVNRNINFTN---I-------CEGHCGFCAFRRDKGDPGAFWLDIEEILEKAAEAVKA--------------------GA 108 (375)
T ss_pred EEEECCCHHH---H-------HHCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHC--------------------CC
T ss_conf 8252665617---9-------8708982734078899766027899999999999865--------------------88
Q ss_pred CEEEEECC--------CCHHHHHHHHHHHHHCCC---CCCCCCCCCCEEE--EEECCCC--HHHHHHHCC-C---CCCEE
Q ss_conf 01441014--------544542899999960376---8457787753688--8513874--147886012-5---65179
Q gi|254781120|r 180 SNIVMMGM--------GEPLCNFDNVKKSLSIAS---DSMGLSFSKRRIT--LSTSGFV--PNIARVGEE-I---GVMLA 240 (384)
Q Consensus 180 ~NiVfMGm--------GEPl~N~d~v~~ai~~l~---~~~g~~~~~r~IT--vST~Gi~--p~I~~la~~-~---~~~LA 240 (384)
T Consensus 109 tEv~~~gG~~P~l~~~~~~~~~y~~~~~~ik~~~p~i~i~a--~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~s~pG~ga 186 (375)
T PRK07360 109 TEVCIQGGLHPAADLNGSSLDFYLEILKAIKAEFPGIHLHA--FSPQEVQFAAREDGLSYEEVLKALKDAGLDSMPGTAA 186 (375)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE--CCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 08997688783445464518999999999998689855640--8999999988664998899999999769875888762
Q ss_pred EEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 9840455113444123312578999999999998625894599999872699988899999999832545316675127
Q gi|254781120|r 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 (384)
Q Consensus 241 iSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N 319 (384)
T Consensus 187 ---Eil~~~vr~~i~P--~K~~~~~wl~v~~~Ah~lGi~ttatmL~Gh~Et~eerv~hL~~iR~lqd~tggf~efIp~~ 260 (375)
T PRK07360 187 ---EILDDEVRRIICP--EKITTAEWIEIVKTAHKLGLPTTSTMMYGHIETPEHRIDHLSILREIQKETGGITEFIPLP 260 (375)
T ss_pred ---CCCCHHHHHCCCC--CCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf ---1034556646598--9889999999999999829970100261898999999999999998887449846997114