HHsearch alignment for GI: 254781120 and conserved domain: PRK13762

>PRK13762 tRNA-modifying enzyme; Provisional.
Probab=98.77  E-value=9.9e-07  Score=70.88  Aligned_cols=260  Identities=17%  Similarity=0.241  Sum_probs=161.5

Q ss_pred             HHCCCCHHHHHHHHHC-CCCCC-CCEEEE----EEC--CCC-CCCEEEECCCCCCCCCEEEEEEECCCCCCCEEEEE---
Q ss_conf             8334788999998620-22578-702346----531--454-43037752477778981554430234677338988---
Q gi|254781120|r   52 GMSDISQEVRHLLNQH-FSIIY-PEIVDE----KIS--CDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS---  119 (384)
Q Consensus        52 ~MtnLpk~lR~~L~e~-~~i~~-l~iv~~----~~S--~DG-T~K~L~~l~d~~~~dg~~IEsVlip~~~r~T~CvS---  119 (384)
T Consensus         3 ~~~~~~~~~~~~L~KqgY~ivG~HSaVK~C~Wtk~~lrg~g~CYK~~FY--------G--I~SH---------rCmqmTP   63 (321)
T PRK13762          3 PRIMIPSEIAKLLRKQGYHLVGRHSAVKLCHWTKKALTGGRSCYKSKFY--------G--IESH---------RCVQMTP   63 (321)
T ss_pred             CCCCCCHHHHHHHHHCCCEEECCCCCEEECCCHHHHHCCCCCCCCEEEE--------C--CCCC---------CCCCCCC
T ss_conf             4213799999999877987863665624644209881799967230010--------6--0201---------4204480


Q ss_pred             ECCCCHHCCCCC---CCCCCHH---HCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCEEEEECCCCHHH
Q ss_conf             406510048613---2244111---0278989999999999997222034444-34344454586110144101454454
Q gi|254781120|r  120 SQVGCSLTCSFC---YTGTQKL---VRNLTAEEILLQVLLARSLLGDFPGCED-IEGMVIPSVGRKISNIVMMGMGEPLC  192 (384)
Q Consensus       120 SQvGC~m~C~FC---aTg~~G~---~RNLt~~EIv~Qv~~~~~~l~~~~~~~~-~~~~~~~~~~~~i~NiVfMGmGEPl~  192 (384)
T Consensus        64 sl~~C~~~CvfCWR~~~~~~~~~~~~~~DdPe~Ive~~i~~h~~li~g~kG~p~v~~er~-~EA~~p~H~AiSL~GEPtl  142 (321)
T PRK13762         64 VLAWCNQRCLFCWRPLEEDVGLLKPPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDKEKF-EEALEPKHVAISLSGEPTL  142 (321)
T ss_pred             CHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-HHHCCCHHEEHHHCCCCCC
T ss_conf             077774448565689988876667788889899999999999999730589999898999-8727910010220488632


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH-HHHHHCCCCCCEEEEEECCCCHHHHHHC-CCCCCCCHHHHHHHH
Q ss_conf             28999999603768457787753688851387414-7886012565179984045511344412-331257899999999
Q gi|254781120|r  193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGEEIGVMLAISLHAVSNDLRNILV-PINRKYPLEMLIDAC  270 (384)
Q Consensus       193 N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~-I~~la~~~~~~LAiSLha~~~~~R~~lm-Pi~~~~~l~~l~~a~  270 (384)
T Consensus       143 -YP~l~eLi~~~h~r-~--~s---tFLVTNg~~P~~l~~l-~~~PTQLYvSldAp~~e~~k~i~rPl~~-d~Wer~~~sL  213 (321)
T PRK13762        143 -YPRLPELIEEFHKR-G--FT---TFLVTNGTRPDVLEKL-EAEPTQLYVSLDAPDKETYNRINRPVIP-DAWERILETL  213 (321)
T ss_pred             -CHHHHHHHHHHHHC-C--CC---EEEEECCCCHHHHHHC-CCCCCEEEEEEECCCHHHHHHHHCCCCH-HHHHHHHHHH
T ss_conf             -02189999999857-9--83---7998289898999856-6765427998006999999986165533-1899999999


Q ss_pred             HHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHC-CCCCEEEEEECCCCCCCCC-----CCCCHHHHHHHHHHHHHC
Q ss_conf             9998625894599999872699988899999999832-5453166751277887988-----688989999999999987
Q gi|254781120|r  271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEY-----LCSDQKDIVTFSECIKRS  344 (384)
Q Consensus       271 ~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~-~~~~~vNLIp~N~~~~~~~-----~~~~~~~i~~F~~~L~~~  344 (384)
T Consensus       214 ~~L~~~~--~RTV~R~TLVkg~Nm~~~~--~yA~Li~~~~P~FIEvK~ym~~G~Sr~rLt~~nmP~heEV~~Fa~~l~~~  289 (321)
T PRK13762        214 ELLPSKK--TRTVIRITLVKGLNMTDPE--GYAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEH  289 (321)
T ss_pred             HHHHCCC--CCEEEEEEEECCCCCCCHH--HHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf             9754379--8759999876565767989--99999985499879871179842677767722399889999999999986