HHsearch alignment for GI: 254781120 and conserved domain: PRK13762
>PRK13762 tRNA-modifying enzyme; Provisional.
Probab=98.77 E-value=9.9e-07 Score=70.88 Aligned_cols=260 Identities=17% Similarity=0.241 Sum_probs=161.5
Q ss_pred HHCCCCHHHHHHHHHC-CCCCC-CCEEEE----EEC--CCC-CCCEEEECCCCCCCCCEEEEEEECCCCCCCEEEEE---
Q ss_conf 8334788999998620-22578-702346----531--454-43037752477778981554430234677338988---
Q gi|254781120|r 52 GMSDISQEVRHLLNQH-FSIIY-PEIVDE----KIS--CDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS--- 119 (384)
Q Consensus 52 ~MtnLpk~lR~~L~e~-~~i~~-l~iv~~----~~S--~DG-T~K~L~~l~d~~~~dg~~IEsVlip~~~r~T~CvS--- 119 (384)
T Consensus 3 ~~~~~~~~~~~~L~KqgY~ivG~HSaVK~C~Wtk~~lrg~g~CYK~~FY--------G--I~SH---------rCmqmTP 63 (321)
T PRK13762 3 PRIMIPSEIAKLLRKQGYHLVGRHSAVKLCHWTKKALTGGRSCYKSKFY--------G--IESH---------RCVQMTP 63 (321)
T ss_pred CCCCCCHHHHHHHHHCCCEEECCCCCEEECCCHHHHHCCCCCCCCEEEE--------C--CCCC---------CCCCCCC
T ss_conf 4213799999999877987863665624644209881799967230010--------6--0201---------4204480
Q ss_pred ECCCCHHCCCCC---CCCCCHH---HCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCEEEEECCCCHHH
Q ss_conf 406510048613---2244111---0278989999999999997222034444-34344454586110144101454454
Q gi|254781120|r 120 SQVGCSLTCSFC---YTGTQKL---VRNLTAEEILLQVLLARSLLGDFPGCED-IEGMVIPSVGRKISNIVMMGMGEPLC 192 (384)
Q Consensus 120 SQvGC~m~C~FC---aTg~~G~---~RNLt~~EIv~Qv~~~~~~l~~~~~~~~-~~~~~~~~~~~~i~NiVfMGmGEPl~ 192 (384)
T Consensus 64 sl~~C~~~CvfCWR~~~~~~~~~~~~~~DdPe~Ive~~i~~h~~li~g~kG~p~v~~er~-~EA~~p~H~AiSL~GEPtl 142 (321)
T PRK13762 64 VLAWCNQRCLFCWRPLEEDVGLLKPPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDKEKF-EEALEPKHVAISLSGEPTL 142 (321)
T ss_pred CHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-HHHCCCHHEEHHHCCCCCC
T ss_conf 077774448565689988876667788889899999999999999730589999898999-8727910010220488632
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH-HHHHHCCCCCCEEEEEECCCCHHHHHHC-CCCCCCCHHHHHHHH
Q ss_conf 28999999603768457787753688851387414-7886012565179984045511344412-331257899999999
Q gi|254781120|r 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGEEIGVMLAISLHAVSNDLRNILV-PINRKYPLEMLIDAC 270 (384)
Q Consensus 193 N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~-I~~la~~~~~~LAiSLha~~~~~R~~lm-Pi~~~~~l~~l~~a~ 270 (384)
T Consensus 143 -YP~l~eLi~~~h~r-~--~s---tFLVTNg~~P~~l~~l-~~~PTQLYvSldAp~~e~~k~i~rPl~~-d~Wer~~~sL 213 (321)
T PRK13762 143 -YPRLPELIEEFHKR-G--FT---TFLVTNGTRPDVLEKL-EAEPTQLYVSLDAPDKETYNRINRPVIP-DAWERILETL 213 (321)
T ss_pred -CHHHHHHHHHHHHC-C--CC---EEEEECCCCHHHHHHC-CCCCCEEEEEEECCCHHHHHHHHCCCCH-HHHHHHHHHH
T ss_conf -02189999999857-9--83---7998289898999856-6765427998006999999986165533-1899999999
Q ss_pred HHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHC-CCCCEEEEEECCCCCCCCC-----CCCCHHHHHHHHHHHHHC
Q ss_conf 9998625894599999872699988899999999832-5453166751277887988-----688989999999999987
Q gi|254781120|r 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEY-----LCSDQKDIVTFSECIKRS 344 (384)
Q Consensus 271 ~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~-~~~~~vNLIp~N~~~~~~~-----~~~~~~~i~~F~~~L~~~ 344 (384)
T Consensus 214 ~~L~~~~--~RTV~R~TLVkg~Nm~~~~--~yA~Li~~~~P~FIEvK~ym~~G~Sr~rLt~~nmP~heEV~~Fa~~l~~~ 289 (321)
T PRK13762 214 ELLPSKK--TRTVIRITLVKGLNMTDPE--GYAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEH 289 (321)
T ss_pred HHHHCCC--CCEEEEEEEECCCCCCCHH--HHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 9754379--8759999876565767989--99999985499879871179842677767722399889999999999986